Query 047017
Match_columns 534
No_of_seqs 709 out of 2922
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 06:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.8E-63 1.7E-67 493.8 61.2 483 33-518 366-892 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.8E-61 1E-65 481.0 60.9 468 37-510 406-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.7E-61 3.7E-66 494.2 52.9 487 35-532 150-715 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.7E-61 1E-65 479.4 51.8 464 36-532 86-552 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.1E-60 6.7E-65 485.0 49.3 483 33-532 117-649 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-57 3.7E-62 453.9 50.5 441 33-506 119-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.7E-34 1.2E-38 299.5 60.7 485 36-533 362-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-33 2.8E-38 296.8 61.0 486 36-532 328-861 (899)
9 PRK11447 cellulose synthase su 100.0 1.8E-27 4E-32 249.8 59.6 484 40-532 31-695 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-26 3E-31 243.2 58.5 485 36-533 111-736 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 3.2E-28 6.9E-33 217.1 35.5 455 39-526 50-508 (966)
12 PRK09782 bacteriophage N4 rece 100.0 6.6E-23 1.4E-27 205.8 55.7 476 43-533 50-702 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 5E-25 1.1E-29 196.9 33.8 428 74-532 50-480 (966)
14 PRK09782 bacteriophage N4 rece 100.0 8.1E-23 1.8E-27 205.2 53.8 439 75-533 47-668 (987)
15 TIGR00990 3a0801s09 mitochondr 100.0 1.5E-22 3.2E-27 200.1 54.7 436 40-509 130-577 (615)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-22 2.5E-27 200.9 47.3 426 75-533 130-567 (615)
17 KOG2002 TPR-containing nuclear 99.9 8.5E-22 1.8E-26 185.5 43.3 437 90-533 254-741 (1018)
18 PRK15174 Vi polysaccharide exp 99.9 3.1E-21 6.8E-26 189.8 47.0 335 38-398 43-381 (656)
19 KOG2002 TPR-containing nuclear 99.9 3.2E-21 7E-26 181.6 44.1 463 51-521 250-763 (1018)
20 PRK10049 pgaA outer membrane p 99.9 4.7E-21 1E-25 192.8 48.5 420 33-511 11-464 (765)
21 PRK10049 pgaA outer membrane p 99.9 2.6E-20 5.6E-25 187.5 51.1 377 35-433 47-456 (765)
22 PRK14574 hmsH outer membrane p 99.9 5.2E-20 1.1E-24 181.4 51.4 438 47-510 44-520 (822)
23 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 186.0 46.6 360 47-433 15-381 (656)
24 PRK11788 tetratricopeptide rep 99.9 1.5E-21 3.3E-26 183.7 35.4 303 79-405 42-354 (389)
25 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3.1E-26 183.9 35.0 304 112-440 41-354 (389)
26 KOG2003 TPR repeat-containing 99.9 1.5E-21 3.3E-26 168.6 29.9 493 18-521 182-707 (840)
27 PRK14574 hmsH outer membrane p 99.9 1.3E-18 2.9E-23 171.5 54.1 435 72-531 34-507 (822)
28 KOG0495 HAT repeat protein [RN 99.9 1.1E-17 2.4E-22 151.2 48.9 471 44-532 383-875 (913)
29 KOG2076 RNA polymerase III tra 99.9 2.2E-16 4.7E-21 148.5 50.1 450 32-503 132-695 (895)
30 KOG2003 TPR repeat-containing 99.9 2.4E-18 5.2E-23 149.1 33.5 446 73-531 202-683 (840)
31 KOG0495 HAT repeat protein [RN 99.9 3.1E-16 6.6E-21 142.1 47.4 459 43-516 412-893 (913)
32 KOG1915 Cell cycle control pro 99.9 5.1E-16 1.1E-20 135.4 46.0 451 40-519 76-551 (677)
33 KOG0547 Translocase of outer m 99.8 1.5E-16 3.3E-21 139.3 32.0 427 42-508 120-571 (606)
34 KOG2076 RNA polymerase III tra 99.8 7.2E-15 1.6E-19 138.5 45.0 318 36-355 172-547 (895)
35 KOG0547 Translocase of outer m 99.8 1.3E-15 2.8E-20 133.6 36.4 436 76-533 119-562 (606)
36 KOG1915 Cell cycle control pro 99.8 1.4E-14 3.1E-19 126.5 42.5 443 58-532 60-531 (677)
37 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.2E-19 124.2 41.7 427 41-506 120-593 (625)
38 KOG1155 Anaphase-promoting com 99.8 2.1E-14 4.5E-19 125.3 40.4 291 209-508 242-541 (559)
39 KOG4422 Uncharacterized conser 99.8 6.8E-14 1.5E-18 120.9 40.1 389 74-505 118-553 (625)
40 PRK10747 putative protoheme IX 99.8 2.2E-14 4.9E-19 133.4 35.7 284 207-503 97-390 (398)
41 KOG1173 Anaphase-promoting com 99.8 4.5E-13 9.8E-18 120.1 41.8 474 34-519 13-534 (611)
42 KOG1155 Anaphase-promoting com 99.7 9.5E-14 2.1E-18 121.2 35.7 445 35-532 76-531 (559)
43 PF13429 TPR_15: Tetratricopep 99.7 1E-17 2.2E-22 149.1 11.8 258 236-500 15-274 (280)
44 TIGR00540 hemY_coli hemY prote 99.7 5.8E-14 1.3E-18 131.5 35.4 291 204-502 94-398 (409)
45 TIGR00540 hemY_coli hemY prote 99.7 8.5E-14 1.8E-18 130.4 35.0 130 298-430 262-396 (409)
46 PF13429 TPR_15: Tetratricopep 99.7 6E-17 1.3E-21 144.1 13.1 259 269-533 13-273 (280)
47 KOG3785 Uncharacterized conser 99.7 7.4E-13 1.6E-17 111.8 36.2 436 44-507 29-494 (557)
48 PRK10747 putative protoheme IX 99.7 1.6E-13 3.5E-18 127.7 35.7 285 83-396 95-388 (398)
49 KOG1173 Anaphase-promoting com 99.7 8.2E-14 1.8E-18 124.7 31.4 451 71-533 15-514 (611)
50 KOG2047 mRNA splicing factor [ 99.7 5.1E-11 1.1E-15 108.7 47.9 483 37-530 102-719 (835)
51 COG2956 Predicted N-acetylgluc 99.7 1.4E-13 3E-18 114.7 28.4 316 210-532 51-385 (389)
52 KOG1126 DNA-binding cell divis 99.7 8.4E-15 1.8E-19 133.7 22.1 292 208-509 333-626 (638)
53 KOG1126 DNA-binding cell divis 99.7 3.5E-14 7.7E-19 129.7 25.1 280 242-532 332-615 (638)
54 COG2956 Predicted N-acetylgluc 99.7 8.6E-13 1.9E-17 110.0 30.5 118 84-202 47-167 (389)
55 COG3071 HemY Uncharacterized e 99.7 2.9E-12 6.3E-17 110.3 34.3 289 205-503 95-390 (400)
56 KOG1174 Anaphase-promoting com 99.7 4.2E-11 9.1E-16 103.5 41.0 284 224-517 227-514 (564)
57 KOG1156 N-terminal acetyltrans 99.7 4.6E-11 9.9E-16 109.2 42.4 437 35-504 5-469 (700)
58 COG3071 HemY Uncharacterized e 99.7 3.5E-12 7.6E-17 109.9 32.8 287 154-468 97-390 (400)
59 KOG1156 N-terminal acetyltrans 99.6 4.5E-11 9.7E-16 109.3 38.8 423 75-533 11-464 (700)
60 KOG4162 Predicted calmodulin-b 99.6 1.7E-11 3.7E-16 114.2 36.8 133 372-508 653-788 (799)
61 KOG2376 Signal recognition par 99.6 1.9E-10 4.1E-15 104.2 41.4 443 39-522 14-506 (652)
62 KOG3785 Uncharacterized conser 99.6 3.9E-11 8.4E-16 101.6 34.7 403 40-472 60-494 (557)
63 PF12569 NARP1: NMDA receptor- 99.6 7E-11 1.5E-15 111.0 38.0 298 42-362 9-333 (517)
64 KOG1129 TPR repeat-containing 99.6 1.9E-13 4.2E-18 113.9 18.6 242 267-514 226-469 (478)
65 KOG1129 TPR repeat-containing 99.6 1.5E-12 3.2E-17 108.7 22.7 231 232-468 226-458 (478)
66 PRK12370 invasion protein regu 99.6 2.2E-12 4.7E-17 125.6 28.0 252 86-364 275-536 (553)
67 KOG4162 Predicted calmodulin-b 99.6 8.7E-11 1.9E-15 109.7 35.1 437 68-531 319-777 (799)
68 TIGR02521 type_IV_pilW type IV 99.6 5.8E-12 1.3E-16 109.7 26.4 201 36-257 30-231 (234)
69 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.6E-16 106.8 26.7 201 299-503 31-232 (234)
70 KOG0548 Molecular co-chaperone 99.5 1.7E-10 3.6E-15 103.5 32.3 427 45-521 10-473 (539)
71 KOG2047 mRNA splicing factor [ 99.5 1.4E-08 3E-13 93.3 44.5 458 36-505 26-581 (835)
72 PRK12370 invasion protein regu 99.5 3E-11 6.5E-16 117.7 29.9 269 101-398 251-535 (553)
73 COG3063 PilF Tfp pilus assembl 99.5 1.8E-11 3.9E-16 97.6 22.1 203 35-258 33-236 (250)
74 KOG1174 Anaphase-promoting com 99.5 2.7E-09 5.9E-14 92.6 36.7 405 36-477 96-508 (564)
75 COG3063 PilF Tfp pilus assembl 99.5 6.4E-11 1.4E-15 94.5 24.6 208 301-512 37-245 (250)
76 PF12569 NARP1: NMDA receptor- 99.5 1.1E-09 2.3E-14 103.1 34.1 431 74-533 6-516 (517)
77 KOG1840 Kinesin light chain [C 99.4 6.8E-11 1.5E-15 109.6 23.6 244 141-395 199-476 (508)
78 KOG0548 Molecular co-chaperone 99.4 3E-09 6.4E-14 95.7 32.6 400 36-469 35-456 (539)
79 KOG4318 Bicoid mRNA stability 99.4 5E-09 1.1E-13 99.6 34.9 245 32-311 20-283 (1088)
80 PRK11189 lipoprotein NlpI; Pro 99.4 5E-10 1.1E-14 99.8 26.9 234 278-520 40-283 (296)
81 KOG0624 dsRNA-activated protei 99.4 9.8E-09 2.1E-13 87.0 32.2 300 39-364 40-371 (504)
82 KOG1127 TPR repeat-containing 99.4 3.6E-09 7.8E-14 101.8 33.2 150 366-519 964-1120(1238)
83 KOG1840 Kinesin light chain [C 99.4 1.9E-10 4.1E-15 106.7 23.8 247 69-326 196-477 (508)
84 KOG2376 Signal recognition par 99.4 6.6E-08 1.4E-12 88.2 38.9 435 36-502 45-519 (652)
85 KOG1914 mRNA cleavage and poly 99.4 2.3E-07 4.9E-12 83.8 43.7 425 69-505 17-503 (656)
86 KOG4340 Uncharacterized conser 99.4 8.1E-09 1.8E-13 85.8 28.6 427 32-505 5-445 (459)
87 KOG4318 Bicoid mRNA stability 99.4 2.9E-09 6.4E-14 101.1 29.3 264 59-346 12-283 (1088)
88 PRK11189 lipoprotein NlpI; Pro 99.4 1.4E-09 3E-14 97.0 26.4 217 51-294 40-266 (296)
89 KOG1127 TPR repeat-containing 99.3 2.8E-08 6.1E-13 95.9 34.9 471 51-530 472-1029(1238)
90 KOG3617 WD40 and TPR repeat-co 99.3 3.3E-07 7.2E-12 86.9 38.9 290 36-360 756-1106(1416)
91 KOG4340 Uncharacterized conser 99.3 9.2E-09 2E-13 85.4 25.3 277 36-324 43-335 (459)
92 cd05804 StaR_like StaR_like; a 99.3 5.1E-08 1.1E-12 90.7 34.1 197 39-258 8-215 (355)
93 KOG0624 dsRNA-activated protei 99.3 1.3E-07 2.8E-12 80.4 32.4 201 309-514 165-381 (504)
94 KOG1125 TPR repeat-containing 99.3 4E-10 8.7E-15 102.0 18.5 219 305-531 291-521 (579)
95 KOG0985 Vesicle coat protein c 99.3 9.5E-07 2.1E-11 85.8 40.7 447 42-532 843-1365(1666)
96 KOG3617 WD40 and TPR repeat-co 99.3 1.1E-07 2.4E-12 90.1 33.5 251 36-326 725-994 (1416)
97 cd05804 StaR_like StaR_like; a 99.2 6.7E-08 1.5E-12 89.9 31.5 299 229-532 6-331 (355)
98 PF04733 Coatomer_E: Coatomer 99.2 7.7E-10 1.7E-14 96.9 17.1 256 237-508 9-270 (290)
99 KOG0985 Vesicle coat protein c 99.2 1E-06 2.2E-11 85.6 38.3 365 70-503 982-1370(1666)
100 KOG1125 TPR repeat-containing 99.2 8.7E-09 1.9E-13 93.6 22.1 223 43-290 291-524 (579)
101 KOG3616 Selective LIM binding 99.2 2.7E-07 5.9E-12 86.5 30.4 107 238-357 741-847 (1636)
102 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-10 2.8E-15 72.0 6.2 49 139-187 1-49 (50)
103 PRK04841 transcriptional regul 99.1 7.4E-07 1.6E-11 94.0 37.8 272 235-506 458-763 (903)
104 KOG3616 Selective LIM binding 99.1 4.7E-07 1E-11 84.9 30.4 281 46-364 715-1025(1636)
105 PF13041 PPR_2: PPR repeat fam 99.1 3.3E-10 7.2E-15 70.1 6.6 49 437-485 1-49 (50)
106 PRK04841 transcriptional regul 99.1 1.7E-06 3.6E-11 91.4 38.0 338 114-469 382-761 (903)
107 PF04733 Coatomer_E: Coatomer 99.1 1.2E-08 2.7E-13 89.4 17.4 127 231-362 133-264 (290)
108 KOG1914 mRNA cleavage and poly 99.1 1.1E-05 2.5E-10 73.3 40.2 393 35-432 18-500 (656)
109 TIGR03302 OM_YfiO outer membra 99.1 5E-08 1.1E-12 84.6 20.4 166 34-202 30-229 (235)
110 COG5010 TadD Flp pilus assembl 99.1 7E-08 1.5E-12 79.3 19.5 166 69-256 64-229 (257)
111 PLN02789 farnesyltranstransfer 99.0 2.4E-07 5.2E-12 82.5 24.8 122 274-398 47-171 (320)
112 KOG1128 Uncharacterized conser 99.0 2E-06 4.3E-11 80.9 30.7 222 172-432 394-615 (777)
113 KOG2053 Mitochondrial inherita 99.0 2.7E-05 6E-10 75.2 44.6 438 46-506 18-539 (932)
114 PLN02789 farnesyltranstransfer 99.0 1.5E-06 3.3E-11 77.4 28.0 215 231-451 39-267 (320)
115 PRK14720 transcript cleavage f 99.0 4.7E-07 1E-11 89.8 25.4 220 35-275 29-268 (906)
116 PRK14720 transcript cleavage f 98.9 3.2E-07 7E-12 91.0 23.3 238 227-519 29-268 (906)
117 PRK15359 type III secretion sy 98.9 1E-07 2.3E-12 74.6 16.1 127 389-521 13-139 (144)
118 KOG3060 Uncharacterized conser 98.9 2.2E-06 4.7E-11 70.1 23.5 190 276-469 24-221 (289)
119 KOG1128 Uncharacterized conser 98.9 1.4E-06 3E-11 81.9 25.4 271 225-516 394-675 (777)
120 COG5010 TadD Flp pilus assembl 98.9 3.5E-07 7.5E-12 75.3 19.0 190 332-527 65-254 (257)
121 TIGR03302 OM_YfiO outer membra 98.9 5E-07 1.1E-11 78.3 20.7 186 69-293 30-232 (235)
122 PRK10370 formate-dependent nit 98.9 1.1E-07 2.4E-12 78.8 15.6 147 45-205 24-173 (198)
123 PRK15359 type III secretion sy 98.9 1.2E-07 2.7E-12 74.2 14.5 95 75-170 27-121 (144)
124 PRK10370 formate-dependent nit 98.9 1.2E-06 2.7E-11 72.6 20.7 126 382-510 52-180 (198)
125 KOG1070 rRNA processing protei 98.9 3.8E-06 8.1E-11 84.6 27.1 227 263-495 1457-1692(1710)
126 KOG3081 Vesicle coat complex C 98.9 7E-06 1.5E-10 67.7 24.1 255 237-508 16-276 (299)
127 KOG1070 rRNA processing protei 98.8 2.9E-06 6.4E-11 85.4 25.3 222 228-454 1457-1686(1710)
128 COG4783 Putative Zn-dependent 98.8 1.2E-06 2.5E-11 78.8 20.3 150 70-223 304-454 (484)
129 KOG3081 Vesicle coat complex C 98.8 1.5E-05 3.2E-10 65.9 23.4 86 239-328 147-236 (299)
130 PRK15179 Vi polysaccharide bio 98.8 4.5E-06 9.7E-11 82.3 24.6 132 333-467 85-216 (694)
131 PRK15179 Vi polysaccharide bio 98.7 1.8E-06 3.8E-11 85.1 20.1 133 68-202 82-214 (694)
132 TIGR02552 LcrH_SycD type III s 98.7 1.2E-06 2.7E-11 68.3 14.7 111 59-171 5-115 (135)
133 KOG3060 Uncharacterized conser 98.7 3.4E-05 7.4E-10 63.3 22.7 190 241-434 24-221 (289)
134 COG4783 Putative Zn-dependent 98.6 4.8E-05 1.1E-09 68.7 24.4 143 340-504 312-455 (484)
135 KOG2053 Mitochondrial inherita 98.6 0.00066 1.4E-08 66.1 44.5 433 36-497 40-564 (932)
136 TIGR02552 LcrH_SycD type III s 98.6 2.5E-06 5.5E-11 66.6 13.5 105 38-145 18-122 (135)
137 KOG0550 Molecular chaperone (D 98.5 8.6E-06 1.9E-10 71.5 16.7 263 238-506 58-353 (486)
138 PF12854 PPR_1: PPR repeat 98.5 1.6E-07 3.5E-12 51.9 3.8 32 136-167 2-33 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 3.3E-06 7.1E-11 76.8 14.4 122 374-501 174-295 (395)
140 PF09976 TPR_21: Tetratricopep 98.5 1.1E-05 2.3E-10 63.6 15.1 115 85-201 24-143 (145)
141 PF12895 Apc3: Anaphase-promot 98.5 1.2E-07 2.7E-12 66.5 3.2 81 452-533 2-83 (84)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.1E-05 2.4E-10 73.5 15.4 126 72-202 169-294 (395)
143 PF12854 PPR_1: PPR repeat 98.4 4.2E-07 9.1E-12 50.2 4.0 32 434-465 2-33 (34)
144 PF09976 TPR_21: Tetratricopep 98.4 2.2E-05 4.7E-10 61.9 15.2 127 37-167 12-144 (145)
145 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.6E-05 3.5E-10 60.4 13.8 109 405-513 3-115 (119)
146 KOG0550 Molecular chaperone (D 98.4 0.00054 1.2E-08 60.7 24.0 277 40-328 52-350 (486)
147 PRK15363 pathogenicity island 98.3 1.6E-05 3.4E-10 61.2 12.2 100 70-170 33-132 (157)
148 TIGR02795 tol_pal_ybgF tol-pal 98.3 2.3E-05 4.9E-10 59.6 13.3 98 38-135 3-105 (119)
149 PF07079 DUF1347: Protein of u 98.3 0.0021 4.5E-08 57.9 40.1 435 47-500 16-521 (549)
150 PLN03088 SGT1, suppressor of 98.3 1.8E-05 3.9E-10 72.6 14.6 100 41-143 6-105 (356)
151 PLN03088 SGT1, suppressor of 98.3 2.3E-05 4.9E-10 71.9 15.1 111 411-523 9-119 (356)
152 cd00189 TPR Tetratricopeptide 98.3 1.4E-05 3.1E-10 58.0 11.3 94 40-134 3-96 (100)
153 PRK15363 pathogenicity island 98.3 2.3E-05 4.9E-10 60.3 11.6 91 43-134 41-131 (157)
154 PF12895 Apc3: Anaphase-promot 98.3 2.2E-06 4.7E-11 60.2 5.4 81 50-131 2-83 (84)
155 KOG0553 TPR repeat-containing 98.2 2E-05 4.4E-10 66.6 11.1 88 81-170 90-178 (304)
156 PRK10866 outer membrane biogen 98.2 0.00061 1.3E-08 58.6 20.1 165 35-202 30-238 (243)
157 KOG0553 TPR repeat-containing 98.2 4.1E-05 8.9E-10 64.7 11.8 106 413-520 90-195 (304)
158 PRK02603 photosystem I assembl 98.1 0.00013 2.8E-09 59.5 14.3 89 38-126 36-126 (172)
159 cd00189 TPR Tetratricopeptide 98.1 4.9E-05 1.1E-09 55.0 10.9 96 74-170 2-97 (100)
160 PF13432 TPR_16: Tetratricopep 98.1 1.3E-05 2.8E-10 52.9 6.9 63 445-508 3-65 (65)
161 COG4700 Uncharacterized protei 98.1 0.00033 7.2E-09 54.7 15.1 126 69-196 86-213 (251)
162 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.0066 1.4E-07 54.7 36.1 133 36-170 41-190 (660)
163 PF05843 Suf: Suppressor of fo 98.1 9.2E-05 2E-09 65.4 13.5 129 39-170 3-136 (280)
164 PF12688 TPR_5: Tetratrico pep 98.1 5.1E-05 1.1E-09 56.4 9.9 94 409-502 6-103 (120)
165 PF12688 TPR_5: Tetratrico pep 98.1 0.00027 5.9E-09 52.5 13.6 94 40-133 4-102 (120)
166 PF14559 TPR_19: Tetratricopep 98.1 1.5E-05 3.1E-10 53.4 6.3 66 450-516 2-67 (68)
167 KOG1130 Predicted G-alpha GTPa 98.0 8.6E-05 1.9E-09 65.4 11.9 269 44-327 24-343 (639)
168 COG4235 Cytochrome c biogenesi 98.0 0.00029 6.2E-09 60.2 14.7 112 58-171 143-257 (287)
169 PRK02603 photosystem I assembl 98.0 0.00035 7.6E-09 56.9 15.0 92 104-196 33-126 (172)
170 PF13432 TPR_16: Tetratricopep 98.0 2.8E-05 6.2E-10 51.3 7.1 61 43-104 3-63 (65)
171 PRK10153 DNA-binding transcrip 98.0 0.00061 1.3E-08 65.5 18.5 141 365-509 333-488 (517)
172 PF14938 SNAP: Soluble NSF att 98.0 0.00048 1E-08 61.2 16.8 98 407-504 158-267 (282)
173 PF13414 TPR_11: TPR repeat; P 98.0 2.8E-05 6.1E-10 52.1 6.9 67 438-505 2-69 (69)
174 PF14559 TPR_19: Tetratricopep 98.0 1.9E-05 4E-10 52.8 6.0 52 84-135 3-54 (68)
175 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.01 2.3E-07 53.5 32.1 432 58-507 30-535 (660)
176 PRK10866 outer membrane biogen 98.0 0.0032 6.9E-08 54.2 20.8 61 75-135 35-98 (243)
177 CHL00033 ycf3 photosystem I as 98.0 0.00018 3.9E-09 58.4 12.6 64 72-135 35-101 (168)
178 PF13414 TPR_11: TPR repeat; P 98.0 1.7E-05 3.7E-10 53.2 5.2 61 473-533 2-63 (69)
179 CHL00033 ycf3 photosystem I as 97.9 8.5E-05 1.8E-09 60.3 9.8 79 441-519 37-117 (168)
180 PF14938 SNAP: Soluble NSF att 97.9 0.0015 3.4E-08 58.0 18.5 63 231-293 157-225 (282)
181 COG4235 Cytochrome c biogenesi 97.9 0.00034 7.5E-09 59.7 13.1 111 36-149 155-268 (287)
182 PRK10803 tol-pal system protei 97.9 0.00054 1.2E-08 59.4 14.6 102 38-141 144-250 (263)
183 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.6E-10 43.9 4.2 33 143-175 2-34 (35)
184 TIGR00756 PPR pentatricopeptid 97.9 3.3E-05 7.1E-10 43.4 4.5 33 441-473 2-34 (35)
185 PF05843 Suf: Suppressor of fo 97.9 0.00069 1.5E-08 59.9 14.9 128 337-467 4-135 (280)
186 PF13812 PPR_3: Pentatricopept 97.9 3.5E-05 7.7E-10 42.9 4.4 32 441-472 3-34 (34)
187 PRK10803 tol-pal system protei 97.9 0.00076 1.7E-08 58.4 14.4 106 405-510 144-253 (263)
188 PRK10153 DNA-binding transcrip 97.8 0.0011 2.4E-08 63.7 16.7 132 69-202 334-479 (517)
189 PF13525 YfiO: Outer membrane 97.8 0.004 8.7E-08 52.2 18.2 49 479-527 146-197 (203)
190 COG4700 Uncharacterized protei 97.8 0.0092 2E-07 47.0 19.3 132 366-499 86-218 (251)
191 PF10037 MRP-S27: Mitochondria 97.8 0.00044 9.5E-09 63.6 13.1 124 329-452 61-186 (429)
192 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.3E-10 42.8 4.1 32 143-174 3-34 (34)
193 PF13525 YfiO: Outer membrane 97.8 0.0019 4.2E-08 54.1 15.7 158 36-196 4-198 (203)
194 PF13371 TPR_9: Tetratricopept 97.8 0.0002 4.4E-09 48.5 8.1 67 447-514 3-69 (73)
195 KOG1130 Predicted G-alpha GTPa 97.8 0.00044 9.6E-09 61.1 11.7 272 80-362 25-343 (639)
196 PF10037 MRP-S27: Mitochondria 97.8 0.00076 1.6E-08 62.1 13.5 123 67-189 61-186 (429)
197 KOG1258 mRNA processing protei 97.7 0.045 9.9E-07 51.7 35.9 407 36-454 44-490 (577)
198 PF04840 Vps16_C: Vps16, C-ter 97.7 0.018 3.8E-07 51.7 21.1 81 409-499 182-262 (319)
199 KOG2041 WD40 repeat protein [G 97.7 0.051 1.1E-06 52.1 26.8 214 48-289 674-903 (1189)
200 PRK15331 chaperone protein Sic 97.7 0.00086 1.9E-08 52.1 11.0 127 35-170 7-134 (165)
201 PRK15331 chaperone protein Sic 97.7 0.0049 1.1E-07 48.0 14.9 89 45-134 45-133 (165)
202 COG3898 Uncharacterized membra 97.6 0.046 9.9E-07 48.7 27.2 280 39-328 84-392 (531)
203 PF13428 TPR_14: Tetratricopep 97.6 0.00021 4.5E-09 42.5 5.1 42 475-516 2-43 (44)
204 PF08579 RPM2: Mitochondrial r 97.6 0.0014 2.9E-08 46.9 9.6 79 110-188 29-116 (120)
205 PF13371 TPR_9: Tetratricopept 97.6 0.00067 1.4E-08 46.0 8.0 61 45-106 3-63 (73)
206 KOG2041 WD40 repeat protein [G 97.5 0.091 2E-06 50.5 31.0 98 87-201 678-785 (1189)
207 PF08579 RPM2: Mitochondrial r 97.5 0.0024 5.3E-08 45.7 10.3 76 411-486 32-116 (120)
208 KOG2796 Uncharacterized conser 97.5 0.032 7E-07 46.7 18.2 134 372-506 180-318 (366)
209 COG1729 Uncharacterized protei 97.5 0.0058 1.3E-07 51.7 14.4 101 39-142 144-249 (262)
210 PF03704 BTAD: Bacterial trans 97.5 0.0052 1.1E-07 48.5 13.4 125 38-179 4-139 (146)
211 KOG1538 Uncharacterized conser 97.5 0.04 8.6E-07 52.3 20.3 232 141-397 556-801 (1081)
212 PF01535 PPR: PPR repeat; Int 97.5 0.0002 4.3E-09 38.7 3.6 29 143-171 2-30 (31)
213 KOG2796 Uncharacterized conser 97.5 0.05 1.1E-06 45.7 20.4 131 302-433 180-315 (366)
214 PF07079 DUF1347: Protein of u 97.4 0.094 2E-06 47.8 41.4 427 81-532 15-519 (549)
215 PF01535 PPR: PPR repeat; Int 97.4 0.00026 5.7E-09 38.3 3.6 28 441-468 2-29 (31)
216 COG1729 Uncharacterized protei 97.4 0.011 2.3E-07 50.2 14.6 108 405-513 143-254 (262)
217 KOG0543 FKBP-type peptidyl-pro 97.4 0.0052 1.1E-07 54.9 12.8 87 440-527 258-344 (397)
218 COG3898 Uncharacterized membra 97.3 0.1 2.2E-06 46.5 33.3 262 228-503 117-392 (531)
219 KOG1258 mRNA processing protei 97.3 0.16 3.4E-06 48.2 34.4 161 56-219 31-194 (577)
220 PF13281 DUF4071: Domain of un 97.3 0.12 2.7E-06 46.9 21.6 79 301-379 143-227 (374)
221 PF13512 TPR_18: Tetratricopep 97.3 0.013 2.7E-07 44.6 12.6 84 34-117 7-93 (142)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0061 1.3E-07 55.8 12.7 66 35-101 73-141 (453)
223 PF13281 DUF4071: Domain of un 97.3 0.13 2.8E-06 46.8 20.8 83 105-187 140-228 (374)
224 PF06239 ECSIT: Evolutionarily 97.2 0.0049 1.1E-07 50.2 10.2 71 120-190 66-152 (228)
225 COG3118 Thioredoxin domain-con 97.2 0.078 1.7E-06 45.6 17.2 121 79-201 141-261 (304)
226 PF13512 TPR_18: Tetratricopep 97.2 0.016 3.5E-07 44.1 11.9 20 490-509 115-134 (142)
227 PF06239 ECSIT: Evolutionarily 97.2 0.019 4.1E-07 46.9 12.8 121 366-505 44-173 (228)
228 KOG2280 Vacuolar assembly/sort 97.1 0.29 6.3E-06 47.7 31.2 108 406-531 686-793 (829)
229 KOG1585 Protein required for f 97.1 0.061 1.3E-06 44.6 15.4 22 269-290 195-216 (308)
230 KOG2114 Vacuolar assembly/sort 97.1 0.33 7.1E-06 48.0 25.2 54 409-466 710-763 (933)
231 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.016 3.4E-07 53.2 13.3 67 69-135 72-141 (453)
232 PF13424 TPR_12: Tetratricopep 97.1 0.0016 3.6E-08 44.7 5.7 63 440-502 6-74 (78)
233 PF04840 Vps16_C: Vps16, C-ter 97.1 0.22 4.7E-06 44.9 26.1 23 39-61 2-24 (319)
234 COG4105 ComL DNA uptake lipopr 97.0 0.16 3.5E-06 42.9 17.6 64 444-508 172-238 (254)
235 PF13431 TPR_17: Tetratricopep 97.0 0.00038 8.3E-09 38.3 1.5 33 497-529 2-34 (34)
236 KOG1585 Protein required for f 97.0 0.093 2E-06 43.6 15.5 211 38-288 32-251 (308)
237 KOG0543 FKBP-type peptidyl-pro 97.0 0.013 2.8E-07 52.5 11.6 124 44-169 215-354 (397)
238 COG3118 Thioredoxin domain-con 96.9 0.093 2E-06 45.1 15.3 144 45-191 142-287 (304)
239 PF02259 FAT: FAT domain; Int 96.9 0.36 7.8E-06 44.8 22.5 150 368-521 145-305 (352)
240 PF10300 DUF3808: Protein of u 96.9 0.075 1.6E-06 51.0 16.6 166 36-202 187-373 (468)
241 PRK11906 transcriptional regul 96.9 0.086 1.9E-06 48.7 16.0 146 350-500 274-433 (458)
242 COG0457 NrfG FOG: TPR repeat [ 96.8 0.3 6.5E-06 42.2 26.6 228 277-506 36-268 (291)
243 PF13428 TPR_14: Tetratricopep 96.7 0.0046 9.9E-08 36.6 4.8 37 75-111 4-40 (44)
244 KOG4555 TPR repeat-containing 96.7 0.067 1.5E-06 39.5 11.3 95 413-509 52-150 (175)
245 PRK11906 transcriptional regul 96.7 0.17 3.6E-06 46.9 16.6 145 52-200 273-431 (458)
246 KOG2114 Vacuolar assembly/sort 96.6 0.84 1.8E-05 45.4 26.3 170 76-255 338-516 (933)
247 KOG1538 Uncharacterized conser 96.6 0.65 1.4E-05 44.6 19.6 206 95-327 623-845 (1081)
248 PF03704 BTAD: Bacterial trans 96.6 0.032 6.8E-07 44.0 10.1 55 340-395 68-122 (146)
249 PF13424 TPR_12: Tetratricopep 96.6 0.0066 1.4E-07 41.7 5.3 23 109-131 49-71 (78)
250 PF04184 ST7: ST7 protein; In 96.5 0.71 1.5E-05 43.1 19.7 58 76-135 172-229 (539)
251 PRK15180 Vi polysaccharide bio 96.5 0.7 1.5E-05 42.7 25.6 128 42-171 294-421 (831)
252 KOG1920 IkappaB kinase complex 96.5 1.4 2.9E-05 45.9 25.8 312 80-431 685-1026(1265)
253 PF12921 ATP13: Mitochondrial 96.5 0.07 1.5E-06 40.3 10.6 52 434-485 47-99 (126)
254 PF04053 Coatomer_WDAD: Coatom 96.4 0.077 1.7E-06 50.1 12.9 114 33-166 259-372 (443)
255 KOG2610 Uncharacterized conser 96.4 0.11 2.5E-06 45.2 12.5 117 83-201 114-234 (491)
256 KOG4234 TPR repeat-containing 96.3 0.15 3.2E-06 41.0 11.7 109 413-523 104-217 (271)
257 KOG1941 Acetylcholine receptor 96.3 0.41 8.9E-06 42.5 15.5 46 239-284 16-63 (518)
258 KOG4555 TPR repeat-containing 96.3 0.17 3.7E-06 37.5 11.2 93 79-171 50-145 (175)
259 PF10300 DUF3808: Protein of u 96.3 0.41 8.9E-06 46.1 17.3 130 267-398 191-334 (468)
260 PF04184 ST7: ST7 protein; In 96.2 0.97 2.1E-05 42.3 18.2 102 408-509 263-381 (539)
261 COG4105 ComL DNA uptake lipopr 96.2 0.66 1.4E-05 39.4 20.7 57 409-466 172-231 (254)
262 KOG2280 Vacuolar assembly/sort 96.2 1.4 3.1E-05 43.2 32.1 338 110-497 441-793 (829)
263 KOG2610 Uncharacterized conser 96.2 0.19 4.1E-06 43.9 12.7 137 118-255 115-273 (491)
264 PF04053 Coatomer_WDAD: Coatom 96.2 0.31 6.7E-06 46.1 15.4 44 152-201 329-372 (443)
265 COG0457 NrfG FOG: TPR repeat [ 96.1 0.85 1.8E-05 39.3 31.0 223 242-469 36-266 (291)
266 KOG1941 Acetylcholine receptor 96.0 0.47 1E-05 42.1 14.6 231 47-291 16-273 (518)
267 KOG1550 Extracellular protein 96.0 1.9 4E-05 42.7 24.4 16 384-399 379-394 (552)
268 PF08631 SPO22: Meiosis protei 96.0 1.1 2.4E-05 39.8 26.1 164 335-501 85-273 (278)
269 KOG4234 TPR repeat-containing 95.9 0.055 1.2E-06 43.4 7.7 85 447-531 103-191 (271)
270 KOG1920 IkappaB kinase complex 95.8 3 6.4E-05 43.6 22.5 110 372-501 942-1053(1265)
271 smart00299 CLH Clathrin heavy 95.8 0.67 1.5E-05 36.1 15.2 83 375-465 13-95 (140)
272 COG4785 NlpI Lipoprotein NlpI, 95.8 0.89 1.9E-05 37.3 17.5 75 94-170 87-162 (297)
273 COG4649 Uncharacterized protei 95.7 0.75 1.6E-05 36.2 14.6 130 72-202 59-193 (221)
274 PF07719 TPR_2: Tetratricopept 95.7 0.033 7.2E-07 30.5 4.5 32 475-506 2-33 (34)
275 PF12921 ATP13: Mitochondrial 95.6 0.31 6.8E-06 36.8 10.5 83 107-189 3-101 (126)
276 PF06552 TOM20_plant: Plant sp 95.5 0.29 6.2E-06 38.9 10.4 110 53-171 7-137 (186)
277 smart00299 CLH Clathrin heavy 95.5 0.9 2E-05 35.4 15.9 41 78-118 13-53 (140)
278 PF13431 TPR_17: Tetratricopep 95.5 0.024 5.3E-07 31.1 3.2 32 95-126 2-33 (34)
279 PF00515 TPR_1: Tetratricopept 95.4 0.04 8.6E-07 30.3 4.1 32 475-506 2-33 (34)
280 KOG2396 HAT (Half-A-TPR) repea 95.4 2.3 5.1E-05 39.8 37.6 90 91-183 90-181 (568)
281 KOG2396 HAT (Half-A-TPR) repea 95.3 2.5 5.5E-05 39.6 37.3 99 401-502 456-558 (568)
282 PF09205 DUF1955: Domain of un 95.3 0.88 1.9E-05 34.0 14.7 61 444-505 91-151 (161)
283 COG3629 DnrI DNA-binding trans 95.2 0.23 5E-06 43.1 9.9 77 108-185 155-236 (280)
284 COG2976 Uncharacterized protei 95.2 1.4 3E-05 35.7 14.0 96 411-508 96-193 (207)
285 PF09205 DUF1955: Domain of un 95.1 0.99 2.1E-05 33.8 14.2 65 230-295 87-151 (161)
286 PF08631 SPO22: Meiosis protei 95.0 2.5 5.4E-05 37.6 27.1 164 152-328 4-186 (278)
287 KOG2471 TPR repeat-containing 94.9 1.7 3.6E-05 40.5 14.6 108 414-521 250-382 (696)
288 PF09613 HrpB1_HrpK: Bacterial 94.9 1.4 3.1E-05 34.5 13.3 55 81-135 19-73 (160)
289 COG4785 NlpI Lipoprotein NlpI, 94.6 2.1 4.6E-05 35.3 18.5 179 334-523 99-290 (297)
290 PRK15180 Vi polysaccharide bio 94.6 0.48 1E-05 43.7 10.5 125 344-471 299-423 (831)
291 PRK11619 lytic murein transgly 94.5 6.1 0.00013 39.9 39.7 415 43-498 39-463 (644)
292 COG4649 Uncharacterized protei 94.5 1.9 4.2E-05 34.1 14.4 123 310-432 69-195 (221)
293 PF13176 TPR_7: Tetratricopept 94.4 0.089 1.9E-06 29.4 3.7 27 476-502 1-27 (36)
294 KOG4648 Uncharacterized conser 94.3 0.29 6.3E-06 43.0 8.2 89 46-135 106-194 (536)
295 KOG3941 Intermediate in Toll s 94.3 0.44 9.5E-06 40.7 8.9 72 121-192 87-174 (406)
296 KOG3941 Intermediate in Toll s 94.1 0.62 1.3E-05 39.9 9.4 105 367-490 65-174 (406)
297 PF13174 TPR_6: Tetratricopept 94.0 0.11 2.3E-06 28.2 3.4 29 478-506 4-32 (33)
298 PRK11619 lytic murein transgly 93.7 8.8 0.00019 38.8 37.1 256 76-361 103-373 (644)
299 KOG3364 Membrane protein invol 93.6 2.4 5.1E-05 32.0 10.5 78 436-513 29-110 (149)
300 PF07719 TPR_2: Tetratricopept 93.6 0.24 5.2E-06 27.0 4.5 20 44-63 8-27 (34)
301 KOG0890 Protein kinase of the 93.6 17 0.00036 41.7 28.6 112 404-519 1670-1800(2382)
302 KOG1550 Extracellular protein 93.6 8.6 0.00019 38.2 27.0 81 88-171 228-323 (552)
303 PF13176 TPR_7: Tetratricopept 93.4 0.21 4.5E-06 27.8 4.0 27 441-467 1-27 (36)
304 PF10602 RPN7: 26S proteasome 93.4 1.4 3.1E-05 35.8 10.3 97 406-502 38-141 (177)
305 PF13181 TPR_8: Tetratricopept 93.3 0.19 4E-06 27.5 3.7 30 476-505 3-32 (34)
306 COG2909 MalT ATP-dependent tra 93.2 11 0.00024 38.4 27.0 231 150-394 424-684 (894)
307 PF10602 RPN7: 26S proteasome 93.2 1.2 2.6E-05 36.2 9.6 96 73-168 37-140 (177)
308 COG3629 DnrI DNA-binding trans 93.1 1.4 3.1E-05 38.4 10.4 74 336-410 155-233 (280)
309 COG2976 Uncharacterized protei 93.0 4.1 9E-05 33.1 13.3 84 114-202 97-185 (207)
310 COG2909 MalT ATP-dependent tra 93.0 12 0.00026 38.2 28.7 225 275-499 426-684 (894)
311 TIGR02561 HrpB1_HrpK type III 92.9 3.5 7.6E-05 31.8 12.2 53 83-135 21-73 (153)
312 PF00515 TPR_1: Tetratricopept 92.5 0.3 6.5E-06 26.6 3.8 24 41-64 5-28 (34)
313 PF11207 DUF2989: Protein of u 92.5 2.5 5.4E-05 34.6 10.2 77 416-494 119-198 (203)
314 KOG4648 Uncharacterized conser 92.4 0.93 2E-05 40.0 8.3 97 413-512 106-203 (536)
315 KOG4570 Uncharacterized conser 92.4 2.3 5E-05 37.2 10.4 49 419-467 115-163 (418)
316 KOG2471 TPR repeat-containing 92.4 7.3 0.00016 36.6 14.0 46 486-532 521-571 (696)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 92.3 1.2 2.6E-05 31.2 7.0 45 422-466 25-69 (103)
318 PF02284 COX5A: Cytochrome c o 92.0 3.3 7.1E-05 29.4 9.0 46 458-503 29-74 (108)
319 PF13170 DUF4003: Protein of u 92.0 8.8 0.00019 34.3 20.3 134 281-416 79-229 (297)
320 KOG0276 Vesicle coat complex C 91.9 6.1 0.00013 38.1 13.3 99 83-201 648-746 (794)
321 PF10345 Cohesin_load: Cohesin 91.8 16 0.00035 37.0 41.0 189 55-255 39-251 (608)
322 PRK09687 putative lyase; Provi 91.7 9.1 0.0002 34.0 26.6 124 368-505 141-265 (280)
323 KOG1586 Protein required for f 91.7 7.3 0.00016 32.8 20.6 18 416-433 166-183 (288)
324 PF13170 DUF4003: Protein of u 91.6 9.8 0.00021 34.1 21.2 61 123-183 79-148 (297)
325 PF07035 Mic1: Colon cancer-as 91.5 6.1 0.00013 31.6 14.9 135 354-502 14-148 (167)
326 PF09613 HrpB1_HrpK: Bacterial 91.3 6 0.00013 31.2 13.5 98 36-135 6-106 (160)
327 PF04097 Nic96: Nup93/Nic96; 91.1 19 0.00041 36.4 18.2 37 483-520 514-550 (613)
328 TIGR02561 HrpB1_HrpK type III 91.0 4.8 0.0001 31.1 9.7 78 43-121 16-93 (153)
329 PF11207 DUF2989: Protein of u 90.8 3.5 7.6E-05 33.8 9.4 80 115-196 116-198 (203)
330 KOG4570 Uncharacterized conser 90.8 2.1 4.5E-05 37.5 8.5 103 67-171 59-165 (418)
331 PRK09687 putative lyase; Provi 90.6 12 0.00026 33.3 27.3 234 227-485 35-278 (280)
332 PF14853 Fis1_TPR_C: Fis1 C-te 90.6 1.7 3.8E-05 26.7 5.9 36 479-514 6-41 (53)
333 KOG4642 Chaperone-dependent E3 90.3 7.4 0.00016 32.8 10.9 87 45-133 18-105 (284)
334 PF10345 Cohesin_load: Cohesin 90.2 23 0.00049 35.9 39.2 168 34-202 56-251 (608)
335 KOG4507 Uncharacterized conser 90.2 1.2 2.6E-05 42.4 7.2 116 401-517 604-719 (886)
336 PF13929 mRNA_stabil: mRNA sta 90.1 12 0.00027 32.7 13.1 64 138-201 199-263 (292)
337 PF07575 Nucleopor_Nup85: Nup8 90.1 20 0.00043 35.9 16.2 23 452-474 508-530 (566)
338 PF00637 Clathrin: Region in C 89.9 0.071 1.5E-06 41.8 -0.7 51 80-130 15-66 (143)
339 COG4455 ImpE Protein of avirul 89.9 3.5 7.6E-05 34.1 8.6 76 407-483 4-81 (273)
340 KOG0890 Protein kinase of the 89.7 45 0.00097 38.6 35.1 324 146-506 1388-1734(2382)
341 PF13374 TPR_10: Tetratricopep 89.6 0.97 2.1E-05 25.9 4.3 29 475-503 3-31 (42)
342 PF04097 Nic96: Nup93/Nic96; 89.6 25 0.00054 35.5 23.8 44 110-154 115-158 (613)
343 COG3947 Response regulator con 89.6 2.3 5E-05 36.8 7.7 56 110-166 283-338 (361)
344 TIGR02508 type_III_yscG type I 89.4 3.8 8.3E-05 29.0 7.3 87 87-180 20-106 (115)
345 COG3947 Response regulator con 89.4 14 0.0003 32.3 12.8 47 477-523 282-328 (361)
346 KOG0276 Vesicle coat complex C 89.3 5.8 0.00013 38.3 10.8 130 267-429 617-746 (794)
347 COG1747 Uncharacterized N-term 89.2 21 0.00045 34.0 22.6 179 297-483 64-248 (711)
348 PF08424 NRDE-2: NRDE-2, neces 88.8 18 0.0004 33.0 17.5 99 331-431 16-129 (321)
349 PF02259 FAT: FAT domain; Int 88.5 21 0.00045 33.1 26.1 64 299-362 146-212 (352)
350 KOG0128 RNA-binding protein SA 88.3 31 0.00068 35.0 31.3 105 95-202 102-216 (881)
351 KOG1308 Hsp70-interacting prot 88.1 0.42 9E-06 42.1 2.6 92 83-176 125-217 (377)
352 COG4455 ImpE Protein of avirul 87.9 5.1 0.00011 33.2 8.3 74 41-115 5-81 (273)
353 PF13181 TPR_8: Tetratricopept 87.8 1.2 2.6E-05 24.1 3.7 20 78-97 7-26 (34)
354 PF04910 Tcf25: Transcriptiona 87.1 25 0.00055 32.6 17.5 95 410-506 109-225 (360)
355 PF13374 TPR_10: Tetratricopep 87.1 1.6 3.6E-05 24.9 4.2 28 440-467 3-30 (42)
356 PF08424 NRDE-2: NRDE-2, neces 86.8 25 0.00053 32.1 19.4 107 61-169 9-130 (321)
357 TIGR02508 type_III_yscG type I 86.7 8.4 0.00018 27.4 7.6 73 181-259 26-98 (115)
358 smart00028 TPR Tetratricopepti 86.4 1.6 3.4E-05 22.7 3.7 29 477-505 4-32 (34)
359 PF02284 COX5A: Cytochrome c o 86.4 9.9 0.00021 27.2 9.0 47 55-101 28-74 (108)
360 PF06552 TOM20_plant: Plant sp 86.4 16 0.00034 29.5 11.5 82 158-259 52-137 (186)
361 KOG1308 Hsp70-interacting prot 85.9 0.18 3.9E-06 44.3 -0.7 89 415-506 125-214 (377)
362 TIGR03504 FimV_Cterm FimV C-te 85.5 2.2 4.8E-05 25.0 3.9 21 446-466 6-26 (44)
363 KOG0545 Aryl-hydrocarbon recep 85.4 12 0.00027 31.7 9.4 97 39-135 180-293 (329)
364 smart00386 HAT HAT (Half-A-TPR 85.3 2.2 4.9E-05 22.5 3.9 29 488-516 1-29 (33)
365 PF07721 TPR_4: Tetratricopept 85.2 1.5 3.3E-05 22.1 2.8 19 42-60 6-24 (26)
366 PF09477 Type_III_YscG: Bacter 85.2 12 0.00026 27.0 9.1 80 86-171 20-99 (116)
367 PF09986 DUF2225: Uncharacteri 84.9 18 0.00038 30.6 10.6 75 440-514 119-206 (214)
368 KOG0292 Vesicle coat complex C 84.8 51 0.0011 34.0 20.9 96 415-510 1002-1120(1202)
369 KOG0545 Aryl-hydrocarbon recep 84.6 18 0.0004 30.7 10.1 107 412-519 186-309 (329)
370 PF07163 Pex26: Pex26 protein; 84.4 26 0.00056 30.6 11.1 26 40-65 38-63 (309)
371 KOG4077 Cytochrome c oxidase, 84.2 8.1 0.00018 28.8 7.0 43 462-504 72-114 (149)
372 KOG4642 Chaperone-dependent E3 83.9 2.2 4.7E-05 35.8 4.6 87 413-503 19-107 (284)
373 KOG1464 COP9 signalosome, subu 83.6 28 0.00062 30.0 19.4 157 205-361 38-218 (440)
374 KOG4507 Uncharacterized conser 83.3 48 0.001 32.4 21.2 96 40-135 215-312 (886)
375 PF14561 TPR_20: Tetratricopep 82.7 14 0.00031 26.0 8.4 34 69-102 19-52 (90)
376 TIGR03504 FimV_Cterm FimV C-te 82.6 3.8 8.3E-05 24.0 4.1 26 42-67 4-29 (44)
377 KOG0551 Hsp90 co-chaperone CNS 82.0 10 0.00023 33.7 8.1 103 405-508 82-187 (390)
378 PF10579 Rapsyn_N: Rapsyn N-te 81.9 5.5 0.00012 26.8 5.0 44 486-529 18-64 (80)
379 PF00637 Clathrin: Region in C 81.9 0.66 1.4E-05 36.3 1.0 53 341-393 14-66 (143)
380 KOG0376 Serine-threonine phosp 81.4 4.6 9.9E-05 37.8 6.2 107 42-151 9-115 (476)
381 COG0790 FOG: TPR repeat, SEL1 80.7 42 0.00092 30.1 23.4 83 276-364 53-143 (292)
382 PRK10941 hypothetical protein; 80.4 17 0.00037 32.0 9.1 65 444-509 186-250 (269)
383 cd00923 Cyt_c_Oxidase_Va Cytoc 79.9 19 0.00041 25.5 9.0 45 55-99 25-69 (103)
384 smart00028 TPR Tetratricopepti 79.5 4.2 9E-05 20.9 3.6 21 43-63 7-27 (34)
385 COG0790 FOG: TPR repeat, SEL1 79.4 47 0.001 29.8 24.6 119 240-364 52-185 (292)
386 PF07035 Mic1: Colon cancer-as 79.2 31 0.00068 27.7 15.6 21 135-155 23-43 (167)
387 PF07163 Pex26: Pex26 protein; 78.6 45 0.00098 29.2 14.0 112 110-221 87-203 (309)
388 KOG0128 RNA-binding protein SA 78.4 85 0.0018 32.2 35.8 393 69-494 110-554 (881)
389 PF04190 DUF410: Protein of un 78.0 48 0.001 29.1 18.1 15 416-430 153-167 (260)
390 KOG2066 Vacuolar assembly/sort 77.8 86 0.0019 31.9 28.7 16 472-487 688-703 (846)
391 PF11846 DUF3366: Domain of un 77.8 14 0.0003 30.7 7.7 35 471-505 141-175 (193)
392 PRK10941 hypothetical protein; 77.7 31 0.00067 30.4 9.9 77 76-152 185-262 (269)
393 PRK12798 chemotaxis protein; R 77.7 62 0.0013 30.3 19.2 154 312-468 125-286 (421)
394 PF12862 Apc5: Anaphase-promot 77.7 16 0.00034 25.9 6.9 25 479-503 46-70 (94)
395 PF09670 Cas_Cas02710: CRISPR- 77.3 65 0.0014 30.3 12.7 59 42-101 136-198 (379)
396 PF14561 TPR_20: Tetratricopep 76.9 23 0.0005 24.9 8.5 64 93-156 9-73 (90)
397 cd00280 TRFH Telomeric Repeat 76.5 15 0.00032 29.7 6.8 48 420-467 85-139 (200)
398 COG1747 Uncharacterized N-term 76.5 75 0.0016 30.6 24.9 180 261-448 63-248 (711)
399 KOG2422 Uncharacterized conser 76.4 80 0.0017 30.9 14.0 93 413-505 351-450 (665)
400 PF12862 Apc5: Anaphase-promot 76.3 24 0.00053 25.0 7.5 56 47-102 8-71 (94)
401 PF14853 Fis1_TPR_C: Fis1 C-te 72.8 17 0.00036 22.5 5.0 19 83-101 12-30 (53)
402 COG4259 Uncharacterized protei 71.7 33 0.00072 24.3 6.7 55 460-514 58-112 (121)
403 KOG4077 Cytochrome c oxidase, 71.6 39 0.00085 25.4 7.4 38 429-466 74-111 (149)
404 PF10579 Rapsyn_N: Rapsyn N-te 71.6 16 0.00034 24.7 5.0 46 381-426 18-65 (80)
405 PF14689 SPOB_a: Sensor_kinase 71.0 10 0.00022 24.3 4.1 24 443-466 27-50 (62)
406 KOG0376 Serine-threonine phosp 70.9 16 0.00035 34.4 6.7 104 413-519 13-117 (476)
407 KOG0551 Hsp90 co-chaperone CNS 70.1 67 0.0015 29.0 9.8 95 370-466 82-180 (390)
408 KOG2062 26S proteasome regulat 69.6 1.3E+02 0.0029 30.5 27.4 254 203-467 366-634 (929)
409 KOG3364 Membrane protein invol 69.5 20 0.00043 27.3 5.7 71 69-141 29-104 (149)
410 PF07575 Nucleopor_Nup85: Nup8 69.5 1.3E+02 0.0028 30.3 19.4 75 284-360 390-464 (566)
411 PF15015 NYD-SP12_N: Spermatog 68.9 24 0.00052 32.7 7.1 51 479-529 233-283 (569)
412 PF14689 SPOB_a: Sensor_kinase 68.5 16 0.00036 23.4 4.6 46 455-502 6-51 (62)
413 KOG2063 Vacuolar assembly/sort 67.6 1.7E+02 0.0037 30.9 21.2 235 3-242 468-745 (877)
414 KOG0530 Protein farnesyltransf 67.5 84 0.0018 27.4 14.1 207 309-520 53-271 (318)
415 PF09797 NatB_MDM20: N-acetylt 67.3 36 0.00078 31.8 8.6 132 67-200 171-310 (365)
416 PF09670 Cas_Cas02710: CRISPR- 67.2 81 0.0018 29.7 10.7 57 341-398 138-198 (379)
417 PF04762 IKI3: IKI3 family; I 65.5 2E+02 0.0044 31.0 16.4 27 176-202 812-840 (928)
418 PF09986 DUF2225: Uncharacteri 63.5 92 0.002 26.4 12.5 71 178-259 120-195 (214)
419 KOG3824 Huntingtin interacting 63.5 30 0.00065 30.6 6.4 65 451-516 128-192 (472)
420 PF11817 Foie-gras_1: Foie gra 63.5 35 0.00076 29.7 7.2 56 111-166 183-243 (247)
421 PF14863 Alkyl_sulf_dimr: Alky 63.0 55 0.0012 25.4 7.3 51 474-524 70-120 (141)
422 KOG2422 Uncharacterized conser 62.9 1.6E+02 0.0035 29.0 15.4 164 154-328 251-448 (665)
423 KOG0292 Vesicle coat complex C 62.4 47 0.001 34.2 8.3 121 82-222 653-781 (1202)
424 COG5191 Uncharacterized conser 62.4 28 0.00061 30.8 6.1 77 36-113 106-183 (435)
425 KOG1586 Protein required for f 61.0 1.1E+02 0.0023 26.3 20.7 60 234-293 159-224 (288)
426 PRK10564 maltose regulon perip 60.8 19 0.00041 31.8 4.9 40 36-75 256-295 (303)
427 KOG1839 Uncharacterized protei 60.5 1.6E+02 0.0034 32.3 12.0 163 79-252 939-1122(1236)
428 PF10255 Paf67: RNA polymerase 60.1 77 0.0017 29.9 8.9 69 178-257 124-192 (404)
429 COG4976 Predicted methyltransf 60.0 22 0.00047 30.0 4.8 57 48-105 6-62 (287)
430 COG5191 Uncharacterized conser 59.7 29 0.00064 30.7 5.8 74 438-512 106-180 (435)
431 PF08311 Mad3_BUB1_I: Mad3/BUB 59.5 76 0.0016 24.1 9.4 44 457-500 81-125 (126)
432 KOG2066 Vacuolar assembly/sort 58.6 2.2E+02 0.0048 29.2 31.3 103 79-188 363-467 (846)
433 PF11846 DUF3366: Domain of un 58.3 54 0.0012 27.2 7.3 33 436-468 141-173 (193)
434 PHA02537 M terminase endonucle 57.9 1.2E+02 0.0026 26.0 10.5 23 486-508 190-212 (230)
435 PRK13342 recombination factor 57.3 1.8E+02 0.0039 27.8 18.6 22 243-264 244-265 (413)
436 KOG4521 Nuclear pore complex, 57.1 2.9E+02 0.0063 30.1 13.7 137 107-252 984-1125(1480)
437 PF15297 CKAP2_C: Cytoskeleton 57.1 1.6E+02 0.0034 27.0 9.9 64 420-485 119-186 (353)
438 PRK10564 maltose regulon perip 56.5 26 0.00057 31.0 5.1 28 444-471 262-289 (303)
439 PF04781 DUF627: Protein of un 56.0 80 0.0017 23.3 8.2 37 493-529 63-99 (111)
440 PRK08691 DNA polymerase III su 55.6 2.5E+02 0.0055 28.9 13.1 86 384-472 179-278 (709)
441 PF04190 DUF410: Protein of un 55.6 1.5E+02 0.0032 26.2 18.3 27 174-200 88-114 (260)
442 PF04762 IKI3: IKI3 family; I 54.7 3.1E+02 0.0068 29.7 13.8 133 36-170 693-843 (928)
443 KOG3824 Huntingtin interacting 54.5 38 0.00082 30.0 5.6 50 484-533 126-175 (472)
444 PF10366 Vps39_1: Vacuolar sor 54.3 85 0.0018 23.1 8.7 27 231-257 41-67 (108)
445 COG0735 Fur Fe2+/Zn2+ uptake r 54.0 88 0.0019 24.5 7.3 46 394-440 11-56 (145)
446 PF00244 14-3-3: 14-3-3 protei 53.8 1.5E+02 0.0032 25.7 13.9 63 40-102 4-67 (236)
447 KOG0687 26S proteasome regulat 53.3 1.8E+02 0.0038 26.4 13.7 97 405-503 105-210 (393)
448 cd08819 CARD_MDA5_2 Caspase ac 52.4 78 0.0017 22.1 6.9 38 276-318 48-85 (88)
449 smart00777 Mad3_BUB1_I Mad3/BU 52.2 70 0.0015 24.3 6.1 41 125-165 82-123 (125)
450 KOG3807 Predicted membrane pro 51.7 1.9E+02 0.004 26.2 12.8 166 76-271 188-353 (556)
451 PRK09857 putative transposase; 51.2 1.7E+02 0.0037 26.3 9.5 66 109-175 209-274 (292)
452 PF11817 Foie-gras_1: Foie gra 51.1 1.1E+02 0.0024 26.6 8.3 54 374-427 183-241 (247)
453 KOG2062 26S proteasome regulat 50.9 2.9E+02 0.0064 28.3 29.5 122 377-502 509-634 (929)
454 KOG0686 COP9 signalosome, subu 50.9 2.2E+02 0.0047 26.8 15.1 95 106-202 150-255 (466)
455 PF07720 TPR_3: Tetratricopept 50.7 43 0.00093 18.6 4.4 18 479-496 6-23 (36)
456 PF04910 Tcf25: Transcriptiona 50.1 2.2E+02 0.0048 26.6 22.9 57 236-292 110-167 (360)
457 COG5187 RPN7 26S proteasome re 50.1 1.9E+02 0.004 25.7 11.4 139 391-531 60-215 (412)
458 COG4976 Predicted methyltransf 50.0 37 0.0008 28.7 4.6 55 414-469 5-59 (287)
459 KOG1839 Uncharacterized protei 49.5 2.2E+02 0.0048 31.3 11.0 162 39-200 934-1123(1236)
460 PF00244 14-3-3: 14-3-3 protei 49.1 1.8E+02 0.0038 25.2 11.0 48 456-503 143-198 (236)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 48.5 1.2E+02 0.0026 23.1 8.3 43 124-166 81-124 (126)
462 COG5159 RPN6 26S proteasome re 48.0 2E+02 0.0043 25.5 21.9 198 235-432 9-234 (421)
463 cd00280 TRFH Telomeric Repeat 47.9 1.5E+02 0.0034 24.2 8.2 23 112-134 117-139 (200)
464 KOG2659 LisH motif-containing 47.7 1.8E+02 0.0038 24.8 11.0 98 366-465 23-129 (228)
465 PF11848 DUF3368: Domain of un 46.6 63 0.0014 19.4 5.2 31 451-481 14-44 (48)
466 KOG2659 LisH motif-containing 46.4 1.9E+02 0.004 24.7 9.3 65 33-99 22-91 (228)
467 KOG2300 Uncharacterized conser 45.8 2.9E+02 0.0063 26.7 33.3 389 39-431 48-512 (629)
468 COG0735 Fur Fe2+/Zn2+ uptake r 45.5 1.4E+02 0.003 23.4 7.2 13 281-293 37-49 (145)
469 PF03745 DUF309: Domain of unk 43.2 89 0.0019 20.1 5.4 49 46-94 8-61 (62)
470 COG4941 Predicted RNA polymera 43.1 2.6E+02 0.0057 25.5 13.2 125 384-511 271-402 (415)
471 KOG4567 GTPase-activating prot 42.6 1.9E+02 0.0042 25.9 8.0 41 356-396 265-305 (370)
472 TIGR01503 MthylAspMut_E methyl 42.5 2.2E+02 0.0047 27.3 8.8 182 191-419 29-241 (480)
473 PF09477 Type_III_YscG: Bacter 42.0 1.4E+02 0.003 21.9 10.9 82 49-136 18-99 (116)
474 KOG4279 Serine/threonine prote 41.6 4.2E+02 0.009 27.4 17.0 197 246-469 180-396 (1226)
475 PF15297 CKAP2_C: Cytoskeleton 41.1 2.9E+02 0.0063 25.4 9.7 65 121-187 118-186 (353)
476 PRK09857 putative transposase; 40.6 2.8E+02 0.006 25.0 9.3 58 144-202 209-266 (292)
477 KOG1464 COP9 signalosome, subu 40.5 2.5E+02 0.0055 24.6 26.2 221 203-429 74-328 (440)
478 PRK12798 chemotaxis protein; R 40.0 3.3E+02 0.0072 25.8 23.2 50 119-168 125-175 (421)
479 cd08819 CARD_MDA5_2 Caspase ac 39.8 1.3E+02 0.0028 21.0 6.9 10 122-131 52-61 (88)
480 PF04090 RNA_pol_I_TF: RNA pol 39.4 1.9E+02 0.0042 24.1 7.3 63 38-100 42-104 (199)
481 PF11663 Toxin_YhaV: Toxin wit 39.3 41 0.00089 25.7 3.1 31 206-238 107-137 (140)
482 PRK07003 DNA polymerase III su 39.2 4.8E+02 0.01 27.4 13.1 84 385-471 180-277 (830)
483 PF11663 Toxin_YhaV: Toxin wit 38.6 41 0.00089 25.7 3.0 30 451-482 107-136 (140)
484 KOG2034 Vacuolar sorting prote 38.1 5.1E+02 0.011 27.4 26.6 267 78-384 364-643 (911)
485 PRK13800 putative oxidoreducta 38.1 5.6E+02 0.012 27.8 27.2 127 366-502 753-880 (897)
486 COG5108 RPO41 Mitochondrial DN 38.0 2.2E+02 0.0048 28.6 8.4 73 77-152 33-114 (1117)
487 KOG0686 COP9 signalosome, subu 37.9 3.5E+02 0.0077 25.5 14.4 64 230-293 151-216 (466)
488 PF14669 Asp_Glu_race_2: Putat 36.9 2.4E+02 0.0053 23.3 14.7 24 270-293 138-161 (233)
489 PF05944 Phage_term_smal: Phag 36.9 1.9E+02 0.0042 22.2 8.3 22 115-136 57-78 (132)
490 PF09454 Vps23_core: Vps23 cor 36.5 1.2E+02 0.0026 19.7 4.7 50 436-486 5-54 (65)
491 KOG2297 Predicted translation 35.6 3.3E+02 0.0072 24.5 17.6 18 406-423 323-340 (412)
492 cd07153 Fur_like Ferric uptake 35.3 1.3E+02 0.0028 22.2 5.5 46 43-88 6-51 (116)
493 COG4259 Uncharacterized protei 35.1 1.7E+02 0.0037 21.0 6.7 51 92-144 57-108 (121)
494 PF13762 MNE1: Mitochondrial s 34.9 2.2E+02 0.0048 22.3 9.1 79 75-153 42-127 (145)
495 PF02184 HAT: HAT (Half-A-TPR) 34.0 83 0.0018 17.0 3.4 22 122-145 3-24 (32)
496 KOG4567 GTPase-activating prot 33.9 3.6E+02 0.0078 24.4 9.7 70 389-463 263-342 (370)
497 PF07064 RIC1: RIC1; InterPro 33.8 3.3E+02 0.0072 24.0 16.7 64 444-507 184-253 (258)
498 KOG2297 Predicted translation 33.0 3.7E+02 0.008 24.2 13.0 21 369-389 321-341 (412)
499 PF13929 mRNA_stabil: mRNA sta 32.9 3.6E+02 0.0079 24.1 23.1 57 262-318 200-257 (292)
500 PF05944 Phage_term_smal: Phag 32.8 2.3E+02 0.005 21.8 8.8 100 249-353 33-132 (132)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.8e-63 Score=493.79 Aligned_cols=483 Identities=22% Similarity=0.352 Sum_probs=335.2
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
-..+...|..++..+++.|++++|+++|++|...++ +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~ 442 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNM 442 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHH
Confidence 345677899999999999999999999999999885 45666777888999999999999999998874 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHh-----------------cccccCChHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 192 TDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLES--RGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 192 ~~~a~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+++|.++|+.| .+.+.|++++|.+++.+|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999887 34455555555555555544 345556666666666666666666666666
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (534)
+.|.+.++.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|.+.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 66666665566666666666666666666666666666666666666666666666666666666666666666655556
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666666666666666666666666665555556666666666666666666666666666665556666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHcC
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----T-------------------RRINESIEVLAAMFEKG 469 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~ 469 (534)
+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 666666666666666666666666666666655544321 0 11244555666666666
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CchHHHHHHHhhc
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-ISRDTFKRLNRTF 518 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 518 (534)
+.||..+|..++.++...+..+.+..+++.+...+. .+...|..+...+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 666666666555555555555555555554433322 2224444444443
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-61 Score=480.95 Aligned_cols=468 Identities=19% Similarity=0.326 Sum_probs=372.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (534)
...+..++..|.+.|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.+ .++..+|+.++.+
T Consensus 406 ~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 406 KIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33444455555555555555555555432 455555555555555555555555555555555 5555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...|+.||..+|+.++.+|.+.|++++|
T Consensus 482 y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh-------------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 196 MKLLDEM-------------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 196 ~~~~~~~-------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.++|++| .+.+.|++++|.++|+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5555544 244455555666666666999999999999999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.+..||..+
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|..++.+|.+.|+.||..+|+.++..|.+
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~ 801 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR 801 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----c-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 417 ----D-------------------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 417 ----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
. +..++|..+|++|.+.|+.||..+|+.++.+++..+....+..+++.|...+..|+
T Consensus 802 ~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~ 881 (1060)
T PLN03218 802 RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK 881 (1060)
T ss_pred HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence 1 12467999999999999999999999999888888999999999999988888899
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
..+|+.+++++.+. .++|..+++.|.+.|..+.-.
T Consensus 882 ~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 882 QSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998432 478999999999999876643
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-61 Score=494.19 Aligned_cols=487 Identities=21% Similarity=0.298 Sum_probs=425.3
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-----------------------------------HHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC-----------------------------------TKLI 79 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~l~ 79 (534)
++..+|+.+|..|.+.|++++|+.+|++|...|+.||..+| +.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 56778999999999999999999999999887777765554 5667
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 159 (534)
.+|.+.|++++|..+|+.|. .++..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+.+.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 77788889999999999887 468889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-------------cccccCChHHHHHHHHHHHHcCCC
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM-------------GMCKKGMVGQAFQFVRSLESRGCQ 226 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------------~~~~~~~~~~a~~~~~~~~~~~~~ 226 (534)
+.+++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|++| .+.+.|++++|+++|++|...++.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999998 678899999999999999999999
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ +|..+|+.++
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764 3666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---------------------
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC--------------------- 365 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------- 365 (534)
.+|.+.|+.++|..+|++|.. ++.||..+|..++.+|++.|+.+.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 777777777777777777765 3667776666665554444444444444443333332
Q ss_pred ---------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCC
Q 047017 366 ---------PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME-STRF 435 (534)
Q Consensus 366 ---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 435 (534)
++|..+|+.++.+|.+.|+.++|+.+|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 467888899999999999999999999999999999999999999999999999999999999998 6789
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 515 (534)
.|+..+|+.++.+|.+.|++++|.+++++| .+.||..+|..|+.+|...|+.+.++...+++.+..|.+...+..+.
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 999999999999999999999999999988 57889999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHHHhhhhhc
Q 047017 516 RTFPLLDVYKEISHLAT 532 (534)
Q Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (534)
++|...|+|+++.+++.
T Consensus 699 n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 699 NLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHHHCCChHHHHHHHH
Confidence 99999999999998864
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-61 Score=479.43 Aligned_cols=464 Identities=17% Similarity=0.296 Sum_probs=442.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANG-CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~ 113 (534)
+...|..++..+.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..+.+.+ .++..+++.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34479999999999999999999999998764 67899999999999999999999999999999998 88999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
..|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999997 57999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISS 273 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (534)
.+.+++..+ .+.|..||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+
T Consensus 242 ~~~~l~~~~------------------~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~ 299 (697)
T PLN03081 242 AGQQLHCCV------------------LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299 (697)
T ss_pred HHHHHHHHH------------------HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHH
Confidence 888877766 788999999999999999999999999999999996 4589999999999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
|++.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.+++..+.+.|+.||..+++.++.+|++.|++++|
T Consensus 300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES- 432 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 432 (534)
.++|++|.+ ||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+
T Consensus 380 ~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 380 RNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 999999964 688999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+.|+..+|+.++.+|++.|++++|.+++++| +..|+..+|..++.+|...|+.+.|..+++++.+..|.+...|.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 599999999999999999999999999999877 77899999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHhhhhhc
Q 047017 513 RLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~~ 532 (534)
.++..|...|+|++|.+++.
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999875
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-60 Score=484.95 Aligned_cols=483 Identities=19% Similarity=0.300 Sum_probs=324.4
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNA 111 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 111 (534)
..++...++.++..|.+.|+++.|..+|++|. +||..+|+.++.+|.+.|++++|..+|+.|...+ .||..+|+.
T Consensus 117 ~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ 192 (857)
T PLN03077 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192 (857)
T ss_pred CCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 34677789999999999999999999999996 5789999999999999999999999999999887 778777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+|...+++..+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|+
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCC
Confidence 666666666666666666666666666666666666666666666666666666553 3455556666666666666
Q ss_pred HhHHHHHHHHh-----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 192 TDKAMKLLDEM-----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 192 ~~~a~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+++|.++|.+| .....|+.+.+.+++..+.+.|..||..+|+.++.+|.+.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 66666666555 2334455555555555555555555555555555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (534)
|. .||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|+++.|.++++.+.+.|..|+.
T Consensus 349 m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 349 ME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred CC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 53 34555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC------------------------------CCCCCHhhHHHHHHHHHhcCC
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDV------------------------------GCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~ 384 (534)
.+++.++.+|++.|++++|.++|++|.+. +++||..+|+.++.+|.+.|+
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 55555555555555555555555555321 234444444444444444444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
.+.+.+++..+.+.|+.++..+++.++.+|.+.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444444444444444444444455555566666666666666554 56778888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--chHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI--SRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
|.+.|+.||..||..++.+|.+.|++++|.++|+.|.+..+. +...|..+...|...|++++|.+++.
T Consensus 580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 888888888888888888888888888888888888854333 23678888888888888888888765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-57 Score=453.88 Aligned_cols=441 Identities=20% Similarity=0.305 Sum_probs=421.1
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
..++..+|..++.++.+.++++.|.+++..+.+.|+.||..+|+.++..|.+.|++++|.++|+.|. .++..+|+.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP---ERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC---CCCeeeHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999997 4789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
+.+|++.|++++|.++|++|.+.|+.|+..+|..++.+|...|+.+.+.+++..+.+.|+.++..+++.|+.+|.+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
++|.++|+.| ..+|..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.
T Consensus 276 ~~A~~vf~~m----------------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 276 EDARCVFDGM----------------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred HHHHHHHHhC----------------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999987 246899999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 273 SLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
+|++.|++++|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~ 409 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTK 409 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999864 688999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 353 ALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS-KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
|.++|++|.+.|+.||..||+.++.+|.+.|..++|..+|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|
T Consensus 410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~- 488 (697)
T PLN03081 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA- 488 (697)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence 999999999999999999999999999999999999999999986 589999999999999999999999999999876
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 432 STRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
++.|+..+|+.++.+|...|+++.|..+++++.+.++ .+..+|..+++.|.+.|++++|.++++.|.+.+..
T Consensus 489 --~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 489 --PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 4789999999999999999999999999999976542 25679999999999999999999999999998753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.7e-34 Score=299.49 Aligned_cols=485 Identities=13% Similarity=0.108 Sum_probs=313.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++.+....+........++..
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 45567777777888888888888888777654 44566666666666666666666666666665544444444444444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------------------------------cCCCHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC----------------------------------SRGMIESAF 161 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------~~g~~~~a~ 161 (534)
+.+.|++++|.++++.+.... +++..++..+...+. ..|++++|.
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555555554444331 223344444444444 445555555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh----------------cccccCChHHHHHHHHHHHHcCC
Q 047017 162 KVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
+.++++...+ +.+..++..++..+...|+.++|...+.++ .+...|++++|..+++.+....
T Consensus 520 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 520 QRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 5555444433 334444455555555555555555555443 2334555666666666555432
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+.+...|..++.++...|++++|...++.+.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3345566666666666666666666666665543 2244555666666666666666666666666543 2245556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
+..+...|++++|..+++.+.... +.+...+..++..+...|++++|...|+.+...+ |+..++..++.++...|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 666666666666666666666553 4455666666777777777777777777776653 3445666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..++..+...|+ .+|+..++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 77777777777652 4466777777777888888888888888887663 3466777778888888888 7788888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 466 FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.+..+ .+..++..++..+...|++++|..+++++++.+|.++.++..++.++...|++++|..+++|
T Consensus 830 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 830 LKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77543 25566677888888899999999999999999998889999999999999999999888764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-33 Score=296.84 Aligned_cols=486 Identities=12% Similarity=0.051 Sum_probs=330.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|...++.+.... +.+...+..++..+...|++++|..+|+.+....|.+...+..+...
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34567778889999999999999999998875 66788899999999999999999999999999888899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... +++..++..++.++...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999998773 2234566678889999999999999999998764 67788999999999999999999
Q ss_pred HHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 196 MKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 196 ~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+.|+++ .+...|++++|...++.+.... +.+..++..+...+.+.|++++|..+++++...+
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999886 3456788888888888877654 3356677777777777777777777777776653
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
+.+...+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..
T Consensus 564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 2345556666666666677777777666666542 3355566666666666666666666666666543 334555556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGM 419 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 419 (534)
++.++...|++++|..+|+++.+.. |.+..++..++..+...|++++|..+++.+.+.. +++...+..++..+...|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543 4444555555555555555555555555554432 2233444444444444455
Q ss_pred HHHHHHHHHHHHhCC--------------------------------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTR--------------------------------FRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
+++|...++++...+ .+.+...+..++..|...|++++|...|+++++
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 555555554444331 122344444555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 468 KGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 468 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
.. +++..++..++..+...|+ .+|+.+++++++..|.++..+..++.++...|++++|...+.
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 2244455555555555555 445555555555555555555555555555566665555543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-27 Score=249.79 Aligned_cols=484 Identities=12% Similarity=0.043 Sum_probs=267.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH----------
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY---------- 109 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------- 109 (534)
....++.+...++.+.|.+.++++.... +.++.++..++..+...|+.++|.+.++++.+..|.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 5556667777778888888888777664 55677777777777778888888888888777776665543
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 110 ------NALISGFCKANQIELANKVLDRLRSRGFSPDVV-TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 110 ------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
..++..+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|.+.++++.+.. |.+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 233445667778888888887777552 22221 11111122234577777777777777664 5566666777
Q ss_pred HHHHHhcCCHhHHHHHHHHhc-----------------------------------------------------------
Q 047017 183 IQATMLEGQTDKAMKLLDEMG----------------------------------------------------------- 203 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~----------------------------------------------------------- 203 (534)
...+...|+.++|+..++++.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 777777777777777766541
Q ss_pred -----------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhH----
Q 047017 204 -----------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP-NVVTY---- 267 (534)
Q Consensus 204 -----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---- 267 (534)
+...|++++|...|++..... +.+...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 122355555555555555442 2245555556666666666666666666655542211 10111
Q ss_pred --------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 268 --------SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 268 --------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 111234455566666666666665543 2234445555666666666666666666665542 112222211
Q ss_pred ------------------------------------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 340 ------------------------------------------ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 340 ------------------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+...|++++|+..|+++.+.. |.++..+..+..
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1222334566666666666665553 445555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------
Q 047017 378 ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST------------------------ 433 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------ 433 (534)
.|...|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666666666666666655431 112222222222222223333332222221100
Q ss_pred ---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 434 ---------------RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 434 ---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
..+.+...+..+...+.+.|++++|+..++++++..+ .+...+..++..+...|++++|++.++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0122333444455555566666666666666665532 245555566666666666666666666
Q ss_pred HHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 499 ALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 499 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
++.+..|.++..+..++.++...|++++|.++++
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6666666666666666666666666666665543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.4e-26 Score=243.19 Aligned_cols=485 Identities=13% Similarity=0.029 Sum_probs=332.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVM-CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+......+.+.+...|++++|++.|+.+.+.+ +++... ...........|+.++|+..++.+.+..|.+..++..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34445667778999999999999999998765 444332 2122222334699999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------------C--------------CChhhH------------------
Q 047017 115 GFCKANQIELANKVLDRLRSRGF------------------S--------------PDVVTY------------------ 144 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~------------------ 144 (534)
.+...|+.++|++.++++..... . |+....
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 99999999999999998764310 0 110000
Q ss_pred ---HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc------------------
Q 047017 145 ---NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG------------------ 203 (534)
Q Consensus 145 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------ 203 (534)
......+...|++++|+..|++.++.. |.+..++..+..++.+.|++++|+..|+++.
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 012345667899999999999999875 6678889999999999999999999988771
Q ss_pred ------------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 204 ------------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 204 ------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+...|++++|...++++.... +.+...+..+..++...|++++|++.|+++++... .+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 124577888888888888764 34566777888889999999999999999887632 2344444444
Q ss_pred HHH------------------------------------------HhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH
Q 047017 272 SSL------------------------------------------CRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 272 ~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (534)
..+ ...|++++|+..++++.+.. +.+...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 433 23344444444444444432 11333344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH---------hhHHHHHHHHH
Q 047017 310 CKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV---------SSYNTMFSALW 380 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 380 (534)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+...+..+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44444444444444444331 222333333333334444444444444443221111111 01122344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIE 460 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 460 (534)
..|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..+...|++++|.+
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666551 24456677788899999999999999999999863 3367888999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch------HHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 461 VLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR------DTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++.+.+... .+..++..+..++...|++++|.+++++++...+..+ ..+..+++++...|++++|...+.+
T Consensus 659 ~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 659 QLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999887532 3566777888899999999999999999999876543 3566779999999999999987653
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-28 Score=217.08 Aligned_cols=455 Identities=16% Similarity=0.137 Sum_probs=386.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
....+.....+.|++.+|++.-...-+.+ +.+.+....+...+.+..+++.....-....+..+.-.++|..+...+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 36778888999999999999887766654 55566666667778888888888877777777778889999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
.|+++.|+.+++.+.+. .| .+..|..+..++...|+.+.|.+.|.+.++.+ |...-....+...+...|++++|..
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987 44 58899999999999999999999999999874 3333344556666777888888888
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHh
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCR 276 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 276 (534)
.+.+. .+.. +--...|..|...+...|+...|+..|++.++. .|+ ...|..|...|..
T Consensus 206 cYlkA------------------i~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 206 CYLKA------------------IETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred HHHHH------------------HhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 77765 3331 223467899999999999999999999999887 344 5689999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 356 (534)
.+.+++|...+.++.... +.....+..+...|...|.+|.|+..+++.++.. +.=+..|+.+..++-..|+..+|...
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999999999988763 3356678888888999999999999999999874 33467899999999999999999999
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRF 435 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 435 (534)
|.+..... +......+.|...+...|.+++|..+|....+. .|. ...++.|...|-.+|++++|...+++.++ +
T Consensus 343 YnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 99999884 778889999999999999999999999999884 444 56789999999999999999999999987 5
Q ss_pred CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 436 RPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 436 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.|+ ...++.+...|-..|+.+.|+..+.+++..++. -.+.++.|...|..+|+..+|+.-|+.++++.|..|+++-.+
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 776 568899999999999999999999999986432 467888999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHH
Q 047017 515 NRTFPLLDVYKE 526 (534)
Q Consensus 515 ~~~~~~~~~~~~ 526 (534)
..++.-..+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 999988877765
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=6.6e-23 Score=205.85 Aligned_cols=476 Identities=14% Similarity=0.068 Sum_probs=287.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
....+...|++++|+..|+.+++.. |.+..++..+...|...|++++|+..+++..+.+|.|...+..+... +++
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 3334445588888888888888776 45577788888888888888888888888887777666555554222 666
Q ss_pred HHHHHHHHHHHhCC--------------------------------------CCCChhhHHHH-HHHHHcCCCHHHHHHH
Q 047017 123 ELANKVLDRLRSRG--------------------------------------FSPDVVTYNIM-IGSLCSRGMIESAFKV 163 (534)
Q Consensus 123 ~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~l-~~~~~~~g~~~~a~~~ 163 (534)
++|..+++++.... ..|+..+.... ..+|.+.|++++|+++
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 66666666665441 01122222222 5677778888888888
Q ss_pred HHHHHhCCC------------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-----------
Q 047017 164 FDQLLRDNC------------------------------KPTVITYTILIQATMLEGQTDKAMKLLDEM----------- 202 (534)
Q Consensus 164 ~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------- 202 (534)
+.++.+.+. +.++..+..++..|.+.|+.++|..+++++
T Consensus 205 L~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 205 YNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 888776541 123333445556677777777777777766
Q ss_pred -------------------------------------cccccC-----------------------------ChHHHHHH
Q 047017 203 -------------------------------------GMCKKG-----------------------------MVGQAFQF 216 (534)
Q Consensus 203 -------------------------------------~~~~~~-----------------------------~~~~a~~~ 216 (534)
.+...+ ...++...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHH
Confidence 011111 12222222
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCC---hhHHHHH-----
Q 047017 217 VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-G-LEPNVVTYSILISSLCRDGK---TEDAVDV----- 286 (534)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----- 286 (534)
+..+... .+-+......+.....+.|+.++|..+|+..... + ..++......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 443 (987)
T PRK09782 365 ARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLP 443 (987)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccc
Confidence 2222111 0113333333444456678888888888777653 1 12223334455555555544 2222222
Q ss_pred -----------------HHHHHHC-CC-CC--CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 287 -----------------LRAAKEK-GL-TP--DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFC 345 (534)
Q Consensus 287 -----------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (534)
+...... +. ++ +...+..+..++.. ++.++|...+.+..... |+......+...+.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~ 520 (987)
T PRK09782 444 LAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY 520 (987)
T ss_pred cchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 1111111 11 22 45556666666655 67777777666666552 44443334444455
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG 425 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 425 (534)
..|++++|+..|+++... +|+...+..++.++...|+.++|...+++..+.. ++....+..+.......|++++|..
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777776543 4444555566667777777777777777777653 2222333333333445577777777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 426 LLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+++..+. .|+...+..+..++.+.|++++|...++++++..+. +...+..+..++...|++++|+..++++++..|
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77777764 445667777777777777777777777777776432 566666777777777777777777777777777
Q ss_pred CchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 506 ISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 506 ~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++.++..++.++...|++++|...+++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777777777777777777766543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=5e-25 Score=196.88 Aligned_cols=428 Identities=14% Similarity=0.134 Sum_probs=363.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
....+..-..+.|++++|++.....-..++.+......+-..+.+..+.+.....-....+.. +.-..+|..+...+..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 356677778899999999999998888888887777777788888888887666554444442 4468899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhh-H
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVIS-Y 232 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~ 232 (534)
.|+++.|+.+|+.+++.. +.....|..+..++...|+.+.|.+.|... .. +.|+... .
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~a------------------lq--lnP~l~ca~ 187 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEA------------------LQ--LNPDLYCAR 187 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHH------------------Hh--cCcchhhhh
Confidence 999999999999999875 667889999999999999999999988765 33 3444433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhc
Q 047017 233 NMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (534)
..+...+-..|+.++|...+.+.++... --...|+.|...+-.+|+...|+..|+++.+.+. .-...|..|...|...
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEA 265 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHH
Confidence 4455666678999999999998887632 2466899999999999999999999999998642 2356889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
+.+++|...+.++.... +.....+..+...|..+|..+.|+..|++..+.. |.-+..|+.+..++-..|+..+|...+
T Consensus 266 ~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999999998873 4556788889999999999999999999999874 666789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+.+... +......+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..++++++- .
T Consensus 344 nkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~ 418 (966)
T KOG4626|consen 344 NKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K 418 (966)
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C
Confidence 9999863 334678899999999999999999999998874 443 567889999999999999999999999875 4
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 472 PN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 472 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
|+ ...++.+...|...|+.+.|...|.+++..+|.-.+++..|+-+|...|+..+|++-++
T Consensus 419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 54 67889999999999999999999999999999999999999999999999998887643
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.1e-23 Score=205.23 Aligned_cols=439 Identities=12% Similarity=0.052 Sum_probs=294.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+......+...|++++|...|+.+.+..|.+..++..++.+|...|++++|...+++..+. .|+...+..++..+
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i--- 121 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI--- 121 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---
Confidence 3334444556699999999999999999999999999999999999999999999999987 55544444433222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHH----------------------------------------HHHHHhcCCHhH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTIL----------------------------------------IQATMLEGQTDK 194 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~~~~g~~~~ 194 (534)
+++++|..+++++.... |.+..++..+ .++|...|++++
T Consensus 122 ~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 78888888888887654 3333333322 444555666666
Q ss_pred HHHHHHHh----------------cccc-cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 195 AMKLLDEM----------------GMCK-KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 195 a~~~~~~~----------------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
|++++.++ .+.. .++ +++..+++. ..+.++..+..++..+.+.|+.++|..+++++..
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 66666655 1111 122 333333221 1224566677777888888888888888777643
Q ss_pred CCCC-CChhhH------------------------------HHHHHHHHh------------------------------
Q 047017 258 RGLE-PNVVTY------------------------------SILISSLCR------------------------------ 276 (534)
Q Consensus 258 ~~~~-~~~~~~------------------------------~~l~~~~~~------------------------------ 276 (534)
.... |...++ ..++..+.+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 3111 110000 001122222
Q ss_pred ---------------------------------CCChhHHHHHHHHHHHC-C-CCCCHhcHHHHHHHHHhcCC---HHHH
Q 047017 277 ---------------------------------DGKTEDAVDVLRAAKEK-G-LTPDAYSYDPLISAYCKDGR---LDLA 318 (534)
Q Consensus 277 ---------------------------------~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a 318 (534)
.|+.++|..+++..... + ..++......++..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 23333344444333331 0 01122233355555555544 2222
Q ss_pred HHH-------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 319 IEF-------------------------LDYMISDGCLP--DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 319 ~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
..+ +..+... .++ +...+..+..++.. ++.++|+..+.+.... .|+...
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 222 1111111 133 56778888888876 8899999988888776 345444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
...+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+.. ++....+..+......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444556667899999999999998764 4555556677888899999999999999998764 2233333344445556
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.|++++|...++++++.. |+...+..+..++.+.|++++|+..++++++..|.++..+..++.++...|++++|+.++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 589 PGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 799999999999999874 568889999999999999999999999999999999999999999999999999999877
Q ss_pred cc
Q 047017 532 TK 533 (534)
Q Consensus 532 ~k 533 (534)
.+
T Consensus 667 ~~ 668 (987)
T PRK09782 667 ER 668 (987)
T ss_pred HH
Confidence 54
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.5e-22 Score=200.14 Aligned_cols=436 Identities=14% Similarity=0.037 Sum_probs=306.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+.+.|++++|+..|++++.. .|+...|..+..++...|++++|+..++.+.+.+|.+..++..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 446677889999999999999999876 467888999999999999999999999999999899999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++++|...|..+...+-..+.. ...++..+.. ..+........+.. +++...+..+...+ ..........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence 99999999888776542111211 1122211111 22333333333332 33333333333322 111111111111
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-ChhhHHHHHHH
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTL---LNMGKWEEGEKLMTEMISRG-LEP-NVVTYSILISS 273 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~ 273 (534)
... .. ..+. ...+..+...+ ...+++++|.+.|+..+..+ ..| ....+..+...
T Consensus 281 ~~~------------------~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 281 EDS------------------NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred hcc------------------cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 100 00 0111 01111111111 23467889999999888764 122 44567777888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
+...|++++|+..+++..+.. +.....+..+...+...|++++|...++.+++.. +.+..++..++..+...|++++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999988763 2245677788888888999999999999888764 55678888888899999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
+..|++..+.. |.+...+..+..++...|++++|+..+++..+. .+.+...++.+..++...|++++|.+.|++....
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999998875 667788888888899999999999999988875 2445778888888999999999999999988775
Q ss_pred CCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 434 RFRPTVI------SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 434 ~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
....+.. .++..+..+...|++++|..+++++++.++ .+...+..+++.+...|++++|.++|+++.+.....
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 3221111 111222233446899999999999888653 245677888999999999999999999998887765
Q ss_pred hH
Q 047017 508 RD 509 (534)
Q Consensus 508 ~~ 509 (534)
.+
T Consensus 576 ~e 577 (615)
T TIGR00990 576 GE 577 (615)
T ss_pred HH
Confidence 54
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.1e-22 Score=200.91 Aligned_cols=426 Identities=12% Similarity=0.000 Sum_probs=279.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+...+..+.+.|++++|+..|+.+....| ++..|..+..+|.+.|++++|++.++..++.+ +.+...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 33445556666666666666666655533 34555666666666666666666666666552 22345555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
|++++|+..|..+...+ +.+......++..+... .+. ......... .+++...+..
T Consensus 208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~----~a~------------------~~~~~~l~~-~~~~~~~~~~ 263 (615)
T TIGR00990 208 GKYADALLDLTASCIID-GFRNEQSAQAVERLLKK----FAE------------------SKAKEILET-KPENLPSVTF 263 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHH----HHH------------------HHHHHHHhc-CCCCCCCHHH
Confidence 66666666555444332 11111111111111110 000 111111111 1222222322
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH---HHhCCChhHHHHHHHHHHHCC-C-CCCHhcHHHHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISS---LCRDGKTEDAVDVLRAAKEKG-L-TPDAYSYDPLISA 308 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~ 308 (534)
+...+ ..........-+....+. .+. ...+..+... ....+++++|...|+.+.+.+ . +.....+..+...
T Consensus 264 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 264 VGNYL-QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHH-HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 22222 111111111111111111 111 1112222111 123578999999999999864 1 2244567788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRA 388 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 388 (534)
+...|++++|...+++++... +.....+..+...+...|++++|+..|+++.+.. |.+...+..+...+...|++++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999874 3456788889999999999999999999998875 77889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 389 LGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...++.+..++...|++++|+..|+++++.
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999863 3456778888899999999999999999998752 345778899999999999999999999999986
Q ss_pred CCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 469 GCKPNET------TYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 469 ~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
....+.. .+......+...|++++|..+++++++.+|.+..++..+++++...|++++|...+++
T Consensus 497 ~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 497 EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4331111 1122222334579999999999999999999999999999999999999999988754
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8.5e-22 Score=185.47 Aligned_cols=437 Identities=14% Similarity=0.106 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 90 KAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS--PDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 90 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
.+..++...-..++.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+.++|...|++++|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444444444555556666666666667777777766666544211 12334566677777777777777777776
Q ss_pred HhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHh----------------ccccc----CChHHHHHHHHHHHHcCCC
Q 047017 168 LRDNCKPT-VITYTILIQATMLEGQTDKAMKLLDEM----------------GMCKK----GMVGQAFQFVRSLESRGCQ 226 (534)
Q Consensus 168 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~----------------~~~~~----~~~~~a~~~~~~~~~~~~~ 226 (534)
.+.. +.+ ...+..|++.|.+.|+++.+...|+++ .|... ...+.|..++.+..... +
T Consensus 334 ~k~~-~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 334 LKAD-NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HccC-CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 6653 222 344556667777777777777777666 12222 13455566665555442 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCC-
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMI----SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK---GLTPD- 298 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~- 298 (534)
.|...|..+...+....-+.. +..|..+. ..+-.+.+...+.+...+...|+++.|...|..+... ...++
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 355666666655554433333 55554443 2333456667777777777778888888777776654 11112
Q ss_pred -----HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 047017 299 -----AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYN 373 (534)
Q Consensus 299 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 373 (534)
..+-..+...+-..++.+.|.+.|..+.+.. +.-+..|..++......++..+|...+..+.... ..++..+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 2233445555566677777777777777762 3233445555544445567777877777777654 55666777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChh
Q 047017 374 TMFSALWSSGDKIRALGMISEMLSK-GIEPDEITYNSLISCLCR------------DGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
.+...+.....+..|.+-|....+. ...+|....-.|+..|.. .+..++|+++|.+.++.. +-|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 7777777777777777766655543 123466666666665542 244667777877777653 33666
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA--ISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 518 (534)
.-+.+.-+++..|++.+|..+|.+..+... ....+|..++.+|..+|++..|++.|+...+... +.++++..|++++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 667777788888888888888888877543 2556778888888888888888888888888643 4567888888888
Q ss_pred chHHHHHHhhhhhcc
Q 047017 519 PLLDVYKEISHLATK 533 (534)
Q Consensus 519 ~~~~~~~~~~~~~~k 533 (534)
...|+|+++.+.+.+
T Consensus 727 y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLK 741 (1018)
T ss_pred HHhhhHHHHHHHHHH
Confidence 888888888776543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=3.1e-21 Score=189.82 Aligned_cols=335 Identities=13% Similarity=0.080 Sum_probs=276.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.....++..+.+.|++++|+.+++..+... +.+...+..++.+....|++++|...++.+....|.+..++..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567888999999999999999998875 6667788888888889999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
..|++++|...++++.... +.+...+..++..+...|++++|...++.+.... +.+...+..++ .+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHHH
Confidence 9999999999999999872 3357788889999999999999999999887764 33444444433 4677888888888
Q ss_pred HHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 047017 198 LLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (534)
.++.+ ......++...+..++..+...|++++|+..++.+.... +.+...+..+...+...
T Consensus 199 ~~~~~------------------l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 199 LARAL------------------LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHH------------------HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 87765 443323344455566778889999999999999999875 33677888899999999
Q ss_pred CChhH----HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 278 GKTED----AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 278 ~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
|++++ |...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..++.+.|++++|
T Consensus 260 G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 260 GRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99986 899999998874 3467788899999999999999999999999874 44667788889999999999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
+..|+.+.... |.+...+..+..++...|++++|...|+++.+.
T Consensus 338 ~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 338 SDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998764 444444555677889999999999999999875
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=3.2e-21 Score=181.62 Aligned_cols=463 Identities=14% Similarity=0.072 Sum_probs=333.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANK 127 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~ 127 (534)
..+..+++++..+-..+ +.++.+.+.|...+.-.|+++.+..+.+.+.... +.-...|..+.++|...|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45556666666665544 5566677777777777777777777777666554 2233456777777777777777777
Q ss_pred HHHHHHhCCCCCCh--hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHH
Q 047017 128 VLDRLRSRGFSPDV--VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----QTDKAMKLLDE 201 (534)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~ 201 (534)
+|.+..+. .++. ..+..+...|...|+++.+...|+.+.+.. |.+..+...|+..|...+ ..+.|..++.+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 77766655 3333 233356667777777777777777777664 556666666666666554 34445544444
Q ss_pred h---------------cccccCChHHHHHHHH----HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 047017 202 M---------------GMCKKGMVGQAFQFVR----SLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR---G 259 (534)
Q Consensus 202 ~---------------~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 259 (534)
. .....++...++..+. .+...+..+.+...|.+...+...|+++.|...|...... .
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 3 1222333333344443 3345566678899999999999999999999999988765 1
Q ss_pred CCCCh------hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047017 260 LEPNV------VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD 333 (534)
Q Consensus 260 ~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (534)
..++. .+-..+....-..++++.|.+.|..+.+.. +.-...|..++......+...+|...+..+...+ ..+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 22333 234556777778889999999999999863 2234455555544555688899999999998874 567
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCC
Q 047017 334 IVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWS------------SGDKIRALGMISEMLSKGI 400 (534)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 400 (534)
+..+..+...+.....+..|.+-|+.+.+.- ..+|+.+...|...|.. .+..++|+++|.+.++..
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 8888888889999999999988777665442 13466666666665532 235678999999988863
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHH
Q 047017 401 EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK-GCKPNETTYVL 479 (534)
Q Consensus 401 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 479 (534)
+-|...-+.+.-+++..|++.+|..+|.+..+.. .....+|..++++|..+|++..|++.|+...+. ....+..+...
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4467777888889999999999999999998863 236678899999999999999999999998874 44557888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 480 LIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
|.+++.+.|.+.+|.+....+....|.++.....++-+..+.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 999999999999999999999999999998777776665443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=4.7e-21 Score=192.76 Aligned_cols=420 Identities=12% Similarity=0.001 Sum_probs=275.1
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
...++....-.+....-.|+.++|+++++++.... +.....+..++.++...|++++|..+++.+.+..|.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34677777778888888889999998888887633 55666788888888888999999999988888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
+.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. |.+...+..++.++...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 888888889999998888888762 33455 7778888888888899998888888875 55666667777777777888
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV------ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVT 266 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 266 (534)
+.|+..++.+ .. .|+. .....++......
T Consensus 167 e~Al~~l~~~------------------~~---~p~~~~~l~~~~~~~~~r~~~~~------------------------ 201 (765)
T PRK10049 167 APALGAIDDA------------------NL---TPAEKRDLEADAAAELVRLSFMP------------------------ 201 (765)
T ss_pred HHHHHHHHhC------------------CC---CHHHHHHHHHHHHHHHHHhhccc------------------------
Confidence 8787777654 11 1220 0001111111000
Q ss_pred HHHHHHHHHhCCCh---hHHHHHHHHHHHC-CCCCCHh-cHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHH
Q 047017 267 YSILISSLCRDGKT---EDAVDVLRAAKEK-GLTPDAY-SYD----PLISAYCKDGRLDLAIEFLDYMISDGCL-PDIVN 336 (534)
Q Consensus 267 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~ 336 (534)
.....+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. .
T Consensus 202 ------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a 274 (765)
T PRK10049 202 ------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-A 274 (765)
T ss_pred ------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-H
Confidence 00111122 4455555555532 1111111 110 1122334556666666666666655311 111 1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CC
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPN----VSSYNTMFSALWSSGDKIRALGMISEMLSKG-----------IE 401 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~ 401 (534)
...+...|...|++++|+..|+++.... +.+ ......+..++...|++++|...++.+.+.. ..
T Consensus 275 ~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 275 QRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 2223556666666666666666655432 111 2234444555666666666666666665531 01
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 402 PD---EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 402 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
|+ ...+..+...+...|++++|++.++++.... +.+...+..++..+...|++++|+..+++++...+ .+...+.
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~ 431 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEV 431 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHH
Confidence 23 2344566677888899999999999887763 34577788888888899999999999999888642 2466666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
..+..+...|++++|+..++++++..|.++.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 777788888999999999999999988887443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=2.6e-20 Score=187.46 Aligned_cols=377 Identities=12% Similarity=0.028 Sum_probs=252.8
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...+..+...+...|++++|..+|+++++.. |.+...+..++.++...|++++|+..++.+.+..|.+.. +..+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 344568899999999999999999999998875 667888889999999999999999999999999888888 999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI------TYTILIQATML 188 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 188 (534)
++...|+.++|...++++.+.. +.+...+..+...+...|..++|++.++.+.. .|+.. ....++..+..
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999873 33566667788888899999999999987664 22210 11111111111
Q ss_pred cCCHhHHHHHHHHhcccccCCh---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMV---GQAFQFVRSLESR-GCQPDVI-SY----NMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+. ...+.+ ++|+..++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+
T Consensus 201 ~~~-------------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 201 PTR-------------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred ccc-------------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 100 111112 3444445544533 1122211 11 111334456688888888888887764
Q ss_pred CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----
Q 047017 260 LE-PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP---DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC----- 330 (534)
Q Consensus 260 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 330 (534)
.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..++...|++++|...++.+.....
T Consensus 268 ~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 22 221 22224667888888888888888877643211 123345556677788888888888888776521
Q ss_pred ------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 331 ------LPD---IVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE 401 (534)
Q Consensus 331 ------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (534)
.|+ ...+..++..+...|+.++|+..++++.... |.+...+..++..+...|++++|+..++++.... +
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-P 424 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-P 424 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C
Confidence 012 1234455666667777777777777776653 6666667777777777777777777777776642 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.+...+...+..+...|++++|..+++++++.
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 23455555556666777777777777777664
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=5.2e-20 Score=181.37 Aligned_cols=438 Identities=12% Similarity=0.024 Sum_probs=253.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
..+.|+++.|+..|+++++.. |.+......++..+...|+.++|+..+++.....+........++..+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 567777777777777777654 2222222266666777777777777777777322444444444466777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 127 KVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl---- 195 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA---- 195 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH----
Confidence 7777777762 224555666667777777777777777777665 334444433333333344444455555554
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH------HHHHHHHH-----
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY------SILISSLC----- 275 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~----- 275 (534)
.... +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...++.-.
T Consensus 196 --------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 196 --------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred --------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 4442 335666677777777777777777666542211 11111111 11111110
Q ss_pred hCCCh---hHHHHHHHHHHHC-CCCCCH-----hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 276 RDGKT---EDAVDVLRAAKEK-GLTPDA-----YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 276 ~~~~~---~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
..+++ +.|+.-++.+... +..|.. ......+.++...+++.++++.++.+...+.+....+...++.+|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 01112 2344444444331 111221 11223345566677777777777777766544445566677777777
Q ss_pred CCCHHHHHHHHHHHhhCC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHH
Q 047017 347 NGNADQALEIFEKLSDVG-----CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-----------EPDE---ITY 407 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~ 407 (534)
.+++++|..+|+.+.... .+++......|..++...+++++|..+++.+.+... .|+. ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 777777777777765432 122333345667777777777777777777765311 1121 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|...++.+....+ -+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhh
Confidence 344555666777777777777776542 33666666777777777777777777766655432 2455555666677777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHH
Q 047017 488 GWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
|++++|..+.+++.+..|.++.+
T Consensus 498 ~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 498 QEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhHHHHHHHHHHHHhhCCCchhH
Confidence 77777777777777777766643
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=1.1e-20 Score=186.01 Aligned_cols=360 Identities=11% Similarity=0.077 Sum_probs=292.4
Q ss_pred HHhcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 47 SFRAGKFDESLYFIESMVAN--GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
+.++.+|+.---+|....+. ....+..-...++..+.+.|++.+|..+++.+....|.+..++..++.+....|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 45566676665555554332 1122334456677788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcc
Q 047017 125 ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGM 204 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 204 (534)
|.+.++++.... +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++.+
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~-- 170 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ-- 170 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH--
Confidence 999999999873 3357788889999999999999999999999875 667788899999999999999999988765
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
..... .+...+..+ ..+...|++++|...++.+......++......+...+...|++++|+
T Consensus 171 ----------------~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 171 ----------------AQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred ----------------HHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 33322 233334333 347889999999999999887643344555566677889999999999
Q ss_pred HHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 285 DVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL----AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
..++.+.+.. +.+...+..+...+...|++++ |...++++.... +.+...+..+...+...|++++|+..++++
T Consensus 233 ~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~a 310 (656)
T PRK15174 233 QTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQS 310 (656)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999875 3467788889999999999985 899999999874 557788999999999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE-ITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.... |.+...+..+..++...|++++|...++++... .|+. ..+..+..++...|++++|...|++..+.
T Consensus 311 l~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 311 LATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9875 677888888999999999999999999999875 3443 34444567788999999999999999875
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.5e-21 Score=183.66 Aligned_cols=303 Identities=15% Similarity=0.180 Sum_probs=185.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD---VVTYNIMIGSLCSRG 155 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 155 (534)
+..+...|++++|...|+++.+.+|.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445566666666666666666665666666666666666666666666666655421111 134555666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC----Hhh
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD----VIS 231 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 231 (534)
++++|..+|+++.+.. +.+..++..++.++...|++++|.+.++.+ ...+..+. ...
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL------------------EKLGGDSLRVEIAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH------------------HHhcCCcchHHHHHH
Confidence 6666666666666543 445556666666666666666666666665 22211111 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.+.......+..++.+|..
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 4455666667777777777777776653 223445666667777777777777777777665322223455666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh---cCCHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS---SGDKIRA 388 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a 388 (534)
.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 77777777777777665 244455566777777777777777777777664 4566666666655543 3467777
Q ss_pred HHHHHHHHHCCCCCCHH
Q 047017 389 LGMISEMLSKGIEPDEI 405 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~ 405 (534)
..+++++.+.++.|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 77777777655555544
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=183.87 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=234.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT---VITYTILIQATML 188 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 188 (534)
....+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999998873 33566788888889999999999999998887532211 2467788888999
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV---- 264 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 264 (534)
.|++++|..+|+++ .+. .+.+..++..++..+...|++++|.+.++.+...+..+..
T Consensus 120 ~g~~~~A~~~~~~~------------------l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 120 AGLLDRAEELFLQL------------------VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred CCCHHHHHHHHHHH------------------HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence 99999999998886 322 2346778888999999999999999999998876533221
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF 344 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++...+......++..++.+|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~ 259 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence 235567777888999999999999988764 3345677778888899999999999999988764222245677888889
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHH
Q 047017 345 CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR---DGMVD 421 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~ 421 (534)
...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+
T Consensus 260 ~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999999988876 355566688888899999999999999888875 5777778777776654 45888
Q ss_pred HHHHHHHHHHhCCCCCChh
Q 047017 422 EAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~ 440 (534)
++..+++++.+.++.|++.
T Consensus 336 ~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 336 ESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hHHHHHHHHHHHHHhCCCC
Confidence 8999999888776666665
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=168.59 Aligned_cols=493 Identities=16% Similarity=0.111 Sum_probs=321.1
Q ss_pred cCCCCccCCCCCCcccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHH
Q 047017 18 VSSSAETRPNTHLLSFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC-TKLIKKFFQERKSNKAVRVME 96 (534)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~ 96 (534)
....+.+........++++-.+...|...|..+....+|+..|+-+++....|+.... ..+++.+.+..++.+|++.++
T Consensus 182 lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyr 261 (840)
T KOG2003|consen 182 LVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYR 261 (840)
T ss_pred HHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHH
Confidence 4455566677778888899999999999999999999999999999988777776654 457788999999999999999
Q ss_pred HHHHcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 97 ILEKYGEP-----DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 97 ~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
..+..-|. ...+.+.+...+.+.|+++.|+.-|+...+. .|+..+-..|+-++...|+-++..+.|.+|+...
T Consensus 262 maldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip 339 (840)
T KOG2003|consen 262 MALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIP 339 (840)
T ss_pred HHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCC
Confidence 88876522 2345666777788999999999999999887 7887777777778888999999999999998653
Q ss_pred CCC------------CHhhHHHHHHH-----HHhcC--CHhHHHHHHHHh-cccccCC----hHHHHHHHHHHHHcCCCC
Q 047017 172 CKP------------TVITYTILIQA-----TMLEG--QTDKAMKLLDEM-GMCKKGM----VGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 172 ~~~------------~~~~~~~l~~~-----~~~~g--~~~~a~~~~~~~-~~~~~~~----~~~a~~~~~~~~~~~~~~ 227 (534)
..+ +....+..+.. .-+.. +-++++-.--++ .-.-.-+ .+-+++.++.-.....
T Consensus 340 ~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l-- 417 (840)
T KOG2003|consen 340 GEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL-- 417 (840)
T ss_pred CCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh--
Confidence 222 22222222211 11111 111111111111 0000000 1111111111100000
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--hCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC--RDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
-...-..-...+.++|+++.|+++++-+.+..-+.....-+.|...+. .-.++..|..+-+.....+ .-++.....-
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nk 496 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNK 496 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcC
Confidence 000011122346788888888888887776543322223333332222 2346777777776665542 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
.......|++++|.+.+++.+..+.. -...+..+...+...|+.++|+..|-++... +..+..++..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 44555678888888888887765321 1222333445566778888888888777554 245777777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
..|++++.+.... ++.|+.++..|...|-+.|+-.+|.+.+-.--.. ++-+..+...|...|....-+++++.+|+++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888777665 5667778888888888888888877765443332 4556777777887788888888888888877
Q ss_pred HHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 466 FEKGCKPNETTYVLLIE-GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
.- ++|+..-|..++. ++.+.|+++.|..+|+..-+..|.+.+.+..|.++...+
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 43 4777777775544 445778888888888888888888888777777766543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.3e-18 Score=171.52 Aligned_cols=435 Identities=11% Similarity=0.042 Sum_probs=330.4
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
+.+...-+....+.|+++.|+..|+++.+..|.+......++..+...|+.++|+.++++.... .+........++..+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 3344444555689999999999999999988777533338888899999999999999999821 112233333446688
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVIS 231 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 231 (534)
...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++ .. ..|+...
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l------------------~~--~dp~~~~ 171 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATEL------------------AE--RDPTVQN 171 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHh------------------cc--cCcchHH
Confidence 99999999999999999886 667788888899999999999999999987 22 2455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH------HHH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY------DPL 305 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l 305 (534)
+..++..+...++..+|++.++++.+.. +-+...+..+..+..+.|-...|.++..+-... +.+..... ...
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 5555555555677767999999999984 336778888889999999999998887764432 12111111 111
Q ss_pred HHHH---H--hcC---CHHHHHHHHHHHHHCC--CCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 306 ISAY---C--KDG---RLDLAIEFLDYMISDG--CLPDIV----NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 306 ~~~~---~--~~~---~~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
+..- . ... -.+.|+.-++.+...- .++... ...-.+.++...+++.+++..|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1100 0 111 2456777777766531 122212 222345678889999999999999998876666678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKG-----IEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRF----------- 435 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------- 435 (534)
-..++.+|...+++++|+.++.++.... .+++......|..++...+++++|..+++++.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 8899999999999999999999987642 233444467889999999999999999999987321
Q ss_pred CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 436 RPTV---ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 436 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+. ..+..++..+...|+..+|.+.++++....+ -|......+...+...|++.+|+..++.+...+|.+..+..
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 2332 2344567778899999999999999988753 48999999999999999999999999999999999999999
Q ss_pred HHHhhcchHHHHHHhhhhh
Q 047017 513 RLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 513 ~l~~~~~~~~~~~~~~~~~ 531 (534)
..+.++..+++|++|..+.
T Consensus 489 ~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 489 AQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 9999999999999997765
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.1e-17 Score=151.23 Aligned_cols=471 Identities=11% Similarity=0.060 Sum_probs=371.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
-++.+...+.+.|+.++.++.+. ++.+.+.|.. +.+..-++.|.++++.+.+.-|.+..+|......--..|+.+
T Consensus 383 WKaAVelE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 383 WKAAVELEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHHhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 34455566777788888888775 3555555554 445566889999999999888999999998888888899999
Q ss_pred HHHHHHHHH----HhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHhHHHH
Q 047017 124 LANKVLDRL----RSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 124 ~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
...+++.+- ...|+..+...|..=...|-..|..-.+..+....+..|+.. -..||..-...|.+.+.++-|..
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 988887764 345888888888888888888898888888888888877643 33578888888888888888888
Q ss_pred HHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 198 LLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261 (534)
Q Consensus 198 ~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 261 (534)
+|... .....|..+.-..+|+++... ++.....|......+-..|+...|..++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 87765 223346667777777777665 3445666777777778889999999999999887533
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTIL 341 (534)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 341 (534)
+...|...+..-.....++.|..+|.+.... .|+...|..-+..-.-.+..++|..++++.++. ++.-...|..+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLG 692 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHh
Confidence 6778888888888999999999999988774 567777777777777789999999999998886 343456788888
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047017 342 AAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVD 421 (534)
Q Consensus 342 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 421 (534)
+.+-+.++.+.|...|..-.+. +|..+..|..+...-.+.|+..+|..++++..-.+ +-+...|...+++-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHH
Confidence 9999999999999998877766 57788888888888888899999999999988765 447788889999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
.|..++.+..+. .+.+...|..-|...-+.++-......+++. ..|+.+...+...+....+++.|+++|.+++
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888765 4445667777777777777766666655554 4566777788888888889999999999999
Q ss_pred HcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 502 SMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
+.+|...++|..+-+.+...|.-++-.+|+.
T Consensus 845 k~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 845 KKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999888888888886666666654
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=2.2e-16 Score=148.51 Aligned_cols=450 Identities=15% Similarity=0.161 Sum_probs=297.4
Q ss_pred ccccCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 32 SFDVKE--TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 32 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
+..+++ .........+...|++++|..++.++++.. +.+..+|..|+.+|-..|+.+++...+-.+-..+|.+...|
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W 210 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELW 210 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHH
Confidence 334444 334455566777799999999999999986 77899999999999999999999999888888889999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVIT----YTILIQA 185 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~ 185 (534)
..+.....+.|+++.|.-+|.++++.. +++...+-.-+..|-+.|+...|...|.++.....+.+..- -...++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999884 44555555667889999999999999999998753222222 2234555
Q ss_pred HHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 047017 186 TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----- 259 (534)
Q Consensus 186 ~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 259 (534)
+...++-+.|.+.++.. .. .+-..+...++.++..+.+...++.+......+....
T Consensus 290 ~~~~~~~e~a~~~le~~------------------~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~ 351 (895)
T KOG2076|consen 290 FITHNERERAAKALEGA------------------LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDD 351 (895)
T ss_pred HHHhhHHHHHHHHHHHH------------------HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCCh
Confidence 66666667777776655 22 1122344556777777777777777777766665511
Q ss_pred ----------------------CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCHhcHHHHHHHHHhcCCH
Q 047017 260 ----------------------LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG--LTPDAYSYDPLISAYCKDGRL 315 (534)
Q Consensus 260 ----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 315 (534)
..++..+ -.+.-++......+....+.......+ +..+...+..+..+|...|.+
T Consensus 352 ~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 352 SEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 1112222 012222333333444444444444444 333455677777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
..|+.++..+.......+...|-.++.+|...|.++.|.+.|+...... |.+......|...+.+.|+.++|.+.+..+
T Consensus 431 ~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 8888888887776444456677778888888888888888888877764 666777777777788888888888877774
Q ss_pred HH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------------------
Q 047017 396 LS--------KGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES----------------------------------- 432 (534)
Q Consensus 396 ~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------------------- 432 (534)
.. .+..|+..........+...|+.++-..+...|+.
T Consensus 510 ~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~ 589 (895)
T KOG2076|consen 510 INPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQI 589 (895)
T ss_pred cCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHH
Confidence 42 23444444444445555555655543322222210
Q ss_pred ----------------------------CCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHH----HH
Q 047017 433 ----------------------------TRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PNET----TY 477 (534)
Q Consensus 433 ----------------------------~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~ 477 (534)
.+...+ ...+..++.++.+.+++++|..+...+...... -+.. .-
T Consensus 590 ~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~ 669 (895)
T KOG2076|consen 590 IRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQ 669 (895)
T ss_pred HHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHH
Confidence 000000 012344566677777888888777777663211 1111 22
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
...+.+....+++..|..++.-++..
T Consensus 670 ~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 670 FLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23445566777888888887777776
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=2.4e-18 Score=149.05 Aligned_cols=446 Identities=12% Similarity=0.073 Sum_probs=303.6
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD------VVTY 144 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~ 144 (534)
.....|..-|.......+|+..++-+.+.. |.....-..+...+.+.+.+.+|+++|+..+.. .|+ +...
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 345556677777888899999999888766 444455566778889999999999999988866 332 2344
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc----------ccccC-ChH--
Q 047017 145 NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG----------MCKKG-MVG-- 211 (534)
Q Consensus 145 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~-~~~-- 211 (534)
+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.++. |.... +.+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 55556678999999999999999876 5777776677777888999999999999881 11111 111
Q ss_pred ---HHH--HHHHHHHHcCCCCCHhhH----HHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 047017 212 ---QAF--QFVRSLESRGCQPDVISY----NMLLRTLLNMGK----WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG 278 (534)
Q Consensus 212 ---~a~--~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (534)
+++ ..++.|.+.+. .+..-+ ..++.- .-.-+ .+-+++.++.-.-. +.-...-..-...+.+.|
T Consensus 358 ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHA--ELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhcc
Confidence 111 11222222110 010000 000000 00000 01111111111100 000011112234578999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 047017 279 KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK--DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 356 (534)
+++.|+++++-+.+.+...-...-+.|-..+.- -.++..|...-+..+..+ .-++.....-.......|++++|.+.
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ 512 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEF 512 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHH
Confidence 999999999988876443333333333333332 346778888887777653 33555555555556679999999999
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR 436 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (534)
|.+..... ..-...+-.+.-.+...|+.++|+..|-++... +..+..++..+...|....+..+|++++-+.... ++
T Consensus 513 ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip 589 (840)
T KOG2003|consen 513 YKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IP 589 (840)
T ss_pred HHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CC
Confidence 99998753 222333444555678899999999999887653 3457778888889999999999999999887665 66
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.|+.++..|...|-+.|+-..|...+-.--+. ++.+.++..-|...|....-+++++.+|+++.-..|........++.
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 68899999999999999999999886655443 45578888888888889989999999999999999987777778889
Q ss_pred hcchHHHHHHhhhhh
Q 047017 517 TFPLLDVYKEISHLA 531 (534)
Q Consensus 517 ~~~~~~~~~~~~~~~ 531 (534)
|+...|+|+.|.+++
T Consensus 669 c~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHhcccHHHHHHHH
Confidence 999999999998775
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=3.1e-16 Score=142.12 Aligned_cols=459 Identities=12% Similarity=0.037 Sum_probs=384.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH----HcC-CCChhhHHHHHHHHH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE----KYG-EPDVFAYNALISGFC 117 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~l~~~~~ 117 (534)
|.-++.+..-|+.|..++..+.+. ++.+..+|......--.+|+.+...++..+.. ..+ ..+...|..=+..|-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 455677778899999999999775 68899999999988889999999888876643 333 667788988899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 118 KANQIELANKVLDRLRSRGFSP--DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
..|..-.+..+....+..|+.- -..+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999998888754 25688888999999999999999999998874 66777888888777778999999
Q ss_pred HHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 196 MKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 196 ~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
..+|+++ ..-..|++..|..++..+.+.... +...|...+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 8888887 333458999999999988887543 7788988999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
.|+...|..-+..-.-.++.++|.+++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++..+..|..
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 567788887777777889999999999999886 3434567888889999999999999999877665 5667788998
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGM 419 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 419 (534)
+...--+.|..-.|..++++..-.+ |.+...|...+.+-.+.|+.+.|..++.++++. ++.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 9888889999999999999998876 889999999999999999999999999998876 56667788888887777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANA 499 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 499 (534)
-......+++. ..|+++...+...+....++++|.+.|.+.++.+.. ...+|.-+.+.+...|.-++-.+++++
T Consensus 803 kTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 KTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 55555555443 457888888899999999999999999999998643 577888899999999999999999999
Q ss_pred HHHcCCCchHHHHHHHh
Q 047017 500 LVSMHAISRDTFKRLNR 516 (534)
Q Consensus 500 ~~~~~~~~~~~~~~l~~ 516 (534)
...-.|.....|....+
T Consensus 877 c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 877 CETAEPTHGELWQAVSK 893 (913)
T ss_pred HhccCCCCCcHHHHHhh
Confidence 99999988877776543
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.1e-16 Score=135.43 Aligned_cols=451 Identities=10% Similarity=0.056 Sum_probs=340.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
|....+--..++++..|..+|++++..+ ..+...|..-+.+-.++.....|..+++.+...-|.-...|...+..--..
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 3334444445778888999999998866 567888888888889999999999999999888777777888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++..|.++|++-.+. .|+...|++.+..=.+.+.++.|..+|++..-. .|++.+|...+..--+.|....+..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998877 899999999999999999999999999998764 688999998888888999999999988
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhC
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN--VVTYSILISSLCRD 277 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 277 (534)
+.+ ...+.. -..+...+.+....-.++..++.|.-+|+-.+..- +.+ ...|..+...--+-
T Consensus 231 erA-----------ie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqf 293 (677)
T KOG1915|consen 231 ERA-----------IEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQF 293 (677)
T ss_pred HHH-----------HHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHh
Confidence 876 111110 01123445555555567788899999998888762 222 33455554444455
Q ss_pred CChhHHHHHH--------HHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----
Q 047017 278 GKTEDAVDVL--------RAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI--VNYNTILA----- 342 (534)
Q Consensus 278 ~~~~~a~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~----- 342 (534)
|+........ +...+.+ +.|-.++-..+..-...|+.+...++|++++.. ++|-. ..|...+-
T Consensus 294 Gd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 294 GDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred cchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHH
Confidence 6655444332 3333332 446677777888888889999999999999886 45532 12222221
Q ss_pred ---HHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 343 ---AFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF----SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 343 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
.-....+.+.+.++|+...+. +|....||..+- ....++.+...|.+++..++. ..|...+|...|..-.
T Consensus 372 alyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 123467899999999999885 566666665543 344677899999999988764 5789999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG-CKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
+.++++.+..++++.++.++ -+..+|...+..-...|+.+.|..+|+-+++.. +......|...|..=...|.++.|+
T Consensus 449 qL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 99999999999999998753 377889888888888999999999999998853 2223455667777777889999999
Q ss_pred HHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 495 ELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.+|+++++..+..+ +|...++.-.
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999887666 6666655443
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.5e-16 Score=139.26 Aligned_cols=427 Identities=15% Similarity=0.051 Sum_probs=245.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPD-VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
.....+.++|++++|+++|.+++.. .|+ +..|.....+|...|+++++.+-....++.+|.-+.++..-..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3445677888888888888888876 455 6677778888888888888888888888887777778888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
++++|+.=..-..-.+.-.|..+--.+=+.+-+ .|....++-.+.+-+|....-..+ ..|...=..+-
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi-~syf~sF~~~~------ 265 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFI-ASYFGSFHADP------ 265 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHH-HHHHhhccccc------
Confidence 888776543332222111122221111122211 222222222221113322222211 22211100000
Q ss_pred HhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hh-cCCHHHHHHHHHHHHHCC---CCCC---------
Q 047017 201 EMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL----LN-MGKWEEGEKLMTEMISRG---LEPN--------- 263 (534)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~---~~~~--------- 263 (534)
......+.......+..++ .. ...+..|.+.+.+-.... ...+
T Consensus 266 --------------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~ 325 (606)
T KOG0547|consen 266 --------------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM 325 (606)
T ss_pred --------------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH
Confidence 0000001111111122111 11 113444444443322110 0111
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 264 VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAA 343 (534)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (534)
..+...-...+.-.|+.-.|..-|+..++.... +...|..+..+|...++.++....|..+.+.+ +.++.+|..-..+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHH
Confidence 222222333345567777777788777776433 22236666677777777777788887777765 4466667777777
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+.-.+++++|..-|++.+... |.+...|..+..+..+.+.+++++..|++..++ ++..+..|+.....+...+++++|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 777777888888888777765 556666777777777777788888888777765 555667777777777777888888
Q ss_pred HHHHHHHHhCCCC-----CChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047017 424 VGLLVDMESTRFR-----PTVI--SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 424 ~~~~~~~~~~~~~-----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
.+.|+..++.... .++. +.-.++..- -.+++..|..++.++++.++. ....+..+...-...|+.++|+++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888777654211 1111 111222221 236777777777777776544 456667777777777777777777
Q ss_pred HHHHHHcCCCch
Q 047017 497 ANALVSMHAISR 508 (534)
Q Consensus 497 ~~~~~~~~~~~~ 508 (534)
|++...+-....
T Consensus 560 FEksa~lArt~~ 571 (606)
T KOG0547|consen 560 FEKSAQLARTES 571 (606)
T ss_pred HHHHHHHHHhHH
Confidence 777776544333
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=7.2e-15 Score=138.51 Aligned_cols=318 Identities=16% Similarity=0.118 Sum_probs=241.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.+..|..|...|-..|+.+++...+-.+--.. |.|.+.|..+.....+.|++++|.-.|.++.+..|++......-+..
T Consensus 172 ~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L 250 (895)
T KOG2076|consen 172 NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSL 250 (895)
T ss_pred chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 56679999999999999999999987765554 67889999999999999999999999999999999998888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcC
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYN----IMIGSLCSRGMIESAFKVFDQLLRDN-CKPTVITYTILIQATMLEG 190 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 190 (534)
|-+.|+...|.+.|.++.+...+.|..-.. ..++.+...++-+.|.+.++.....+ -..+...++.++..+.+..
T Consensus 251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~ 330 (895)
T KOG2076|consen 251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK 330 (895)
T ss_pred HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH
Confidence 999999999999999999873222222222 34566777788899999998887632 2445567888888888888
Q ss_pred CHhHHHHHHHHh-------------------------------------------cccccCChHHHHHHHHHHHHcC--C
Q 047017 191 QTDKAMKLLDEM-------------------------------------------GMCKKGMVGQAFQFVRSLESRG--C 225 (534)
Q Consensus 191 ~~~~a~~~~~~~-------------------------------------------~~~~~~~~~~a~~~~~~~~~~~--~ 225 (534)
.++.+....... ++...+..+....++..+.... +
T Consensus 331 q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 331 QSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 888888776655 2222222333333333344444 3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
..+...|..+..++...|++.+|+.+|..+......-+...|..++.+|...|.++.|.+.|+.+.... +.+......|
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~L 489 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITL 489 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhH
Confidence 335667888899999999999999999999887555567789999999999999999999999998863 3355667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD--------GCLPDIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
...+.+.|+.++|.++++.+... ...|+..........+.+.|+.++=+.
T Consensus 490 asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 490 ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88899999999999999885422 233444444555566667777665433
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-15 Score=133.55 Aligned_cols=436 Identities=13% Similarity=0.053 Sum_probs=283.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSR 154 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 154 (534)
...++-+.+.|++++|++.+.+++...|..+..|.....+|...|+|++..+.-.+.++. .|+ +..+.--..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345677889999999999999999987666889999999999999999999999998877 554 55667777889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
|++++|+.=..-.--.+.-.|..+--.+=+.+-+.|. ..+.+-+.. .+......+-.+-.-.......|.+..++.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~---nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKE---NRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcc---cCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 9999887644433222212222222222222222221 222222221 011111111111111111111121111110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
-= -.-....++.+.+...... .|......+...........-.+..-..+ .--..+.......+.-.|+
T Consensus 273 ~~---ksDa~l~~~l~~l~~~~~e-------~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 273 SD---KSDAALAEALEALEKGLEE-------GYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred Cc---cchhhHHHHHHHHHhhCch-------hHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCC
Confidence 00 0001122333333222211 22222222211111111110000000000 0001122223334556799
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISE 394 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 394 (534)
.-.|..-|+..++.... +...|-.+..+|...++.++-...|.++.+.+ |.++.+|..-...+.-.+++++|..-|++
T Consensus 342 ~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987533 34447888889999999999999999999987 88999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 047017 395 MLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK--- 471 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 471 (534)
.++.. +.+...|-.+..+..+.+++++++..|++.++. ++..+..|+.....+..++++++|.+.|+.+++....
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 98853 234566666777777899999999999999886 5667889999999999999999999999999885322
Q ss_pred --CCHHHH--HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 472 --PNETTY--VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 472 --~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.+...+ ..++..- -.+++..|..++.++++.+|.+..++..|+.+-.+.|+.++|+++|+|
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 122222 2333222 348999999999999999999999999999999999999999999986
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.4e-14 Score=126.54 Aligned_cols=443 Identities=14% Similarity=0.056 Sum_probs=337.3
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
+-|+.-++.+ ..+...|..-++.-..++++..|..+|+.++..+..+...|...+.+-.+..+++.|..++++....
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-- 136 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-- 136 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--
Confidence 3444444433 5566677777777778889999999999999999999999999999999999999999999999876
Q ss_pred CCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHH
Q 047017 138 SPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQF 216 (534)
Q Consensus 138 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~ 216 (534)
-|- ...|...+..=-..|++..|.++|++.... .|+..+|.+.++.-.+...++.|..++++.
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerf-------------- 200 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERF-------------- 200 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------
Confidence 343 445666666667789999999999999875 899999999999999999999999999987
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047017 217 VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-G-LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG 294 (534)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (534)
. -+.|++.+|......-.++|+...+..+|+..++. | -..+...+.+++..-.++..++.|.-+|+-+++.-
T Consensus 201 ----V--~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 201 ----V--LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred ----h--eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 24589999999999999999999999999988764 1 11123455666666667788999999999988862
Q ss_pred CCCC--HhcHHHHHHHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 295 LTPD--AYSYDPLISAYCKDGRLDLAIEF--------LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 295 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
+.+ ...|..+...=-+-|+.....+. ++..++.+ +.|..+|-..+..-...|+.+...++|++++..
T Consensus 275 -pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 275 -PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred -CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 222 33444444444445664443332 34455553 668889999999888999999999999999876
Q ss_pred CCCCHh--hHHHHH--------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHH
Q 047017 365 CPPNVS--SYNTMF--------SALWSSGDKIRALGMISEMLSKGIEPDEITYNSL----ISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 365 ~~~~~~--~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 430 (534)
+||-.. .|...+ -.-....+.+.+.++++..++. ++-...||..+ ...-.++.+...|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 466432 121111 1224577999999999999984 44455555444 33445788999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-Cch-
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-ISR- 508 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~- 508 (534)
+. ..|...+|...|..-.+.++++....++++.++.++. +..+|...+..=...|+.+.|+.+|+-+++... ..|
T Consensus 431 IG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 431 IG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred hc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 75 5888899999999999999999999999999998744 788899988888899999999999999998754 222
Q ss_pred HHHHHHHhhcchHHHHHHhhhhhc
Q 047017 509 DTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-.|...+..-...+.++.+..++.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHH
Confidence 344444455556777777766643
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.9e-14 Score=124.19 Aligned_cols=427 Identities=14% Similarity=0.209 Sum_probs=239.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--hcCCHhHH-HHHHHHHHHc----------------
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFF--QERKSNKA-VRVMEILEKY---------------- 101 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~---------------- 101 (534)
++|++ .+..|....+.-+|+.|.+.|++.+...-..++..-+ ...+.--| .+.|-.+...
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 33443 5678999999999999999988877777666665322 22221111 1112111111
Q ss_pred ----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh
Q 047017 102 ----GEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI 177 (534)
Q Consensus 102 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 177 (534)
-|....++..++.+.++--+.+.|.++|++......+.+..+||.+|.+-.-. .-.++..+|....+.||..
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchH
Confidence 14456667777777777777777777777776665566777777776543322 2256677777776777777
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 047017 178 TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE-GEKLMTEMI 256 (534)
Q Consensus 178 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 256 (534)
|+|+++.+..+.|+++.|.+.+ .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++.
T Consensus 275 TfNalL~c~akfg~F~~ar~aa--------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAA--------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHH--------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 7777777777777777665543 3446666777777777777777777777666533 333333332
Q ss_pred H----CCCCC----ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCH---hcHHHHHHHHHhcCCHHHHHHH
Q 047017 257 S----RGLEP----NVVTYSILISSLCRDGKTEDAVDVLRAAKEKG----LTPDA---YSYDPLISAYCKDGRLDLAIEF 321 (534)
Q Consensus 257 ~----~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~ 321 (534)
. ..+.| +...|...+..|....|.+-|.++..-+.... +.|+. .-|..+..+.++....+.-..+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222 23345555666666777777766665554321 12221 1244555666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 322 LDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE 401 (534)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (534)
|+.|+..-+.|+..+...++++..-.|.++-.-++|.+++..|..-+......++..+++ ....
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~----------------~k~h 484 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR----------------DKLH 484 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc----------------CCCC
Confidence 777776666667777777777776677777777777776665533222222222222222 1112
Q ss_pred CCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC
Q 047017 402 PDEI---TYNSLISCLCRDGMVDEA-VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG----CKPN 473 (534)
Q Consensus 402 ~~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 473 (534)
|+.. -+.....-|+ -++.++ ...-.++... .......+.++-.+.+.|..++|.+++.-..+.+ ..|.
T Consensus 485 p~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ 560 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL 560 (625)
T ss_pred CCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence 2111 1111111110 011111 1112233322 2334445556666667777777777777665432 1233
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
......++..-...+++..|...++-+...+..
T Consensus 561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 333445556666666777777777777665543
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.1e-14 Score=125.27 Aligned_cols=291 Identities=13% Similarity=0.077 Sum_probs=223.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhCCChh-HHHH
Q 047017 209 MVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE--PNVVTYSILISSLCRDGKTE-DAVD 285 (534)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~-~a~~ 285 (534)
..+++++-.......|.+.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++..-....... -|..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44455555555577777777777777777888899999999999999887311 15667777764432222211 1222
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
+++ + . +-.+.+...+++-|.-.++.++|...|++.++.+ +.....|..++.-|....+...|+..|+.+.+..
T Consensus 322 v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~- 394 (559)
T KOG1155|consen 322 VSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN- 394 (559)
T ss_pred HHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-
Confidence 211 1 1 2345677778888889999999999999999986 4466789999999999999999999999999986
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
|.|-..|-.+.++|.-.+.+.-|+-+|+++... .+.|...|.+|+.+|.+.++.++|++.|.+....|-. +...+..|
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~L 472 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRL 472 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHH
Confidence 889999999999999999999999999999886 3557899999999999999999999999999887533 66788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 446 ILGFCKTRRINESIEVLAAMFE----KGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+..|-+.++.++|...+++.++ .|...+ .....-|..-+.+.+++++|..+.......++...
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~e 541 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECE 541 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHH
Confidence 9999999999999999888876 233322 22233455667789999999998888887755444
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.8e-14 Score=120.89 Aligned_cols=389 Identities=17% Similarity=0.219 Sum_probs=252.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHh--cCCHHHH-HHHHHHHHhCC-------------
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCK--ANQIELA-NKVLDRLRSRG------------- 136 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~--~g~~~~a-~~~~~~~~~~~------------- 136 (534)
+=+.+++ .+.+|..+++.-+|+.|...+ +.++.+-..+.+.-+- ..++.-| .+.|-.|...|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3455555 467789999999999999888 6666665555544322 2221111 11222222211
Q ss_pred ------CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCCh
Q 047017 137 ------FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMV 210 (534)
Q Consensus 137 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 210 (534)
.+.+..++..+|.++++--..+.|.++|++......+.+..+||.++.+-.-.-+ .+
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~------------- 259 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KK------------- 259 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HH-------------
Confidence 1335667788888888887788888888877766567777788877765322111 33
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH-HHH
Q 047017 211 GQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEG----EKLMTEMISRGLEPNVVTYSILISSLCRDGKTED-AVD 285 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~ 285 (534)
++.+|......||..|+|.++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..
T Consensus 260 -----Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 260 -----LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred -----HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 344457778899999999999999999987764 5677888889999999999999998888887754 555
Q ss_pred HHHHHHHC----CCC----CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhCCCH
Q 047017 286 VLRAAKEK----GLT----PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----CLPD---IVNYNTILAAFCKNGNA 350 (534)
Q Consensus 286 ~~~~~~~~----~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~ 350 (534)
++..+... .+. .+...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 55555432 222 234456667788888888888888776654321 1222 23456677777888888
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
+.-...|+.+.-.-+-|+..+...++++....+.++-.-++|..+...|..-+.... ++++..+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHH
Confidence 888999999887767788888888999888888888888888888776533222222 2233333
Q ss_pred HhCCCCCChh---hHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 431 ESTRFRPTVI---SYNIIILGFCKTRRINESI-EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 431 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+....|+.. -+.....-|+ -++.++. ..-.++.+...+ ....+.++-.+.+.|..++|.+++.-+.+.+.
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 3333333322 2222221111 1233332 234455555544 45566667778899999999999998876543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.2e-14 Score=133.40 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=218.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHhCCChhHH
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVIS-YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS--ILISSLCRDGKTEDA 283 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 283 (534)
.|+++.|.+.+....... +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 455555555554434431 22333 333345558999999999999999876 45543332 346788899999999
Q ss_pred HHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHH
Q 047017 284 VDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV-------NYNTILAAFCKNGNADQALEI 356 (534)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~ 356 (534)
...++.+.+.. +-++.....+...|.+.|+++.|..++..+.+.+..++.. ++..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999875 4477888999999999999999999999999876443221 223333334445566777778
Q ss_pred HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 357 FEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR 436 (534)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (534)
++.+.+. .+.++.....++..+...|+.++|..++++..+. +++.... ++.+....++.+++.+.++...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 8877654 3678889999999999999999999999999884 4555332 2333445699999999999998763 4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.|...+..+...|...|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.++|++.+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677889999999999999999999999986 688899999999999999999999999998764
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.5e-13 Score=120.09 Aligned_cols=474 Identities=12% Similarity=0.090 Sum_probs=333.9
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
..+..-+..+++-+..+.++.-|+-+-+++...+ .|+.....+++++.-.|+++.|..+...-. ....+........
T Consensus 13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~-le~~d~~cryL~~ 89 (611)
T KOG1173|consen 13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYK-LEKRDIACRYLAA 89 (611)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhhHHHHHHHH
Confidence 4567788999999999999999999999887654 566667778899999999999888776542 2267888888889
Q ss_pred HHHHhcCCHHHHHHHHHHH----HhC---------CCCCChhh----HHH-------HHHHHHcCCCHHHHHHHHHHHHh
Q 047017 114 SGFCKANQIELANKVLDRL----RSR---------GFSPDVVT----YNI-------MIGSLCSRGMIESAFKVFDQLLR 169 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~----~~~---------~~~~~~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~~~ 169 (534)
.++.+..+++.|..++... ... .+.+|... -+. -...|....+.++|...|.+.+.
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 9999999999999998822 110 01111111 111 11334455667888888888765
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc-ccCChHHHHHHHHHHH-----------------HcCCCCCHhh
Q 047017 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC-KKGMVGQAFQFVRSLE-----------------SRGCQPDVIS 231 (534)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~ 231 (534)
.. ...-..+..++....- ..++-..++..+.+. ..+...+-.+.+-++. -.+..-+...
T Consensus 170 ~D-~~c~Ea~~~lvs~~ml--t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dl 246 (611)
T KOG1173|consen 170 AD-AKCFEAFEKLVSAHML--TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDL 246 (611)
T ss_pred cc-hhhHHHHHHHHHHHhc--chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHH
Confidence 43 1122233333332211 111222222221111 0111111111111100 0112234455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
...-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+. .|..+.+|..++--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 5556667888999999999999998874 556666777777888899888877777777775 35567788889888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGM 391 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (534)
.|+.++|...|.+....+ +.-...|..++..|.-.+..+.|+..|..+.+. ++.....+..+..-|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999987764 223567889999999999999999999988776 243444455566678889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 392 ISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFR----PTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|.++... .+.|+...+.+.-.....+.+.+|..+|+..... .+. --..+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 9998875 3556778888887777889999999999887632 011 12446788999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 466 FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
+.... .+..++..++-.+...|+++.|.+.|.+++-+.|.+..+-..|..+..
T Consensus 482 L~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 482 LLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 98754 488999999999999999999999999999999998766666665443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=9.5e-14 Score=121.23 Aligned_cols=445 Identities=14% Similarity=0.118 Sum_probs=304.4
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+.+..-..+.+.++....++.|.-.++.... .-..|..+...+. .|.-+.-...- .... + ...+....+
T Consensus 76 ~~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~L-a~~kk~~e~~~-~~l~--~--~~~~~~~~~ 144 (559)
T KOG1155|consen 76 VLEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYL-AGEKKSEEEMA-ELLG--R--LESFSRINS 144 (559)
T ss_pred hhhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHH-hhhHHHHHHHH-Hhhc--c--chhhhhhhh
Confidence 4555566688889999999999888776543 2222333322222 22222111111 1111 0 011111111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.+... .+.++. ...+...|...+-.....+.+.|....|...|......- |..-.+|..|.... .+.+.
T Consensus 145 ~l~~L------~~~le~-~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~ 213 (559)
T KOG1155|consen 145 ELIEL------NKPLES-KHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI 213 (559)
T ss_pred HHHHH------hhHHHH-HHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH
Confidence 11111 111111 122334466666666677788899999999998887653 55556666665543 22222
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISY--NMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
+..+. .+.+.+...+ -.+..++......+++..-.+.....|++-+...-+..+.
T Consensus 214 ~~~l~-----------------------~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~ 270 (559)
T KOG1155|consen 214 LSILV-----------------------VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAA 270 (559)
T ss_pred HHHHH-----------------------hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 21111 1112221111 2234556666688888888888888888777777777777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCC--CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 273 SLCRDGKTEDAVDVLRAAKEKGLT--PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
+.....|+++|+.+|+++.++++- .|..+|..++ |.+..+-..+ -+-+.....+ .-.+.|...+++.|.-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs-~LA~~v~~id-KyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLS-YLAQNVSNID-KYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHH-HHHHHHHHhc-cCCccceeeehhHHHHHHhH
Confidence 778899999999999999987321 2455666655 3333322221 1112222221 33567788889999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
++|+..|+.+.+.+ |.....|+.+.+-|...++...|..-++.+.+.+ +-|...|..++.+|.-.+...=|+-+|++.
T Consensus 347 EKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 99999999999986 6777889999999999999999999999999864 557889999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------c
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS-------M 503 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 503 (534)
.... +.|...|..|..+|.+.++.++|++.|.+++..| ..+...+..|++.+-+.++..+|...|++.++ .
T Consensus 425 ~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~ 502 (559)
T KOG1155|consen 425 LELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEI 502 (559)
T ss_pred HhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc
Confidence 8863 4478999999999999999999999999999876 34678899999999999999999999999988 2
Q ss_pred CCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 504 HAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 504 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
.+....+...|+..+...++|++|....+
T Consensus 503 ~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 503 DDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred chHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 33334566678999999999999987544
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1e-17 Score=149.06 Aligned_cols=258 Identities=17% Similarity=0.212 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRG-LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
...+.+.|++++|+++++...... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444445555555555553332221 1122333333333444445555555555555443221 33333333333 34455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+++|..++....+. .+++..+...+..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|+..++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555444443332 1233334444444445555555555544443221 12334444444444455555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 394 EMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
++++.. +.+......++..+...|+.+++.+++....+.. +.++..+..+..++...|++++|+.++++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 444431 1123444444444444454444444444443321 2233344444444444555555555555444432 124
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
+.+...++.++...|+.++|.++.+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444555555555554444443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=5.8e-14 Score=131.47 Aligned_cols=291 Identities=12% Similarity=0.021 Sum_probs=206.1
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhCCCh
Q 047017 204 MCKKGMVGQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV--TYSILISSLCRDGKT 280 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 280 (534)
....|+++.|.+.+.+..+. .|++ ..+-....+....|+++.|.+.+.+..+.. |+.. ........+...|++
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 34455666666666554554 3433 344455677888999999999999988763 4443 344457888899999
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF---CKNGNADQALEIF 357 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~ 357 (534)
+.|...++.+.+.. +-++.....+...+...|+++.|.+.+..+.+.+..+.......-..++ ...+..+.....+
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999875 3367788899999999999999999999999886443322211111111 2222223233344
Q ss_pred HHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 358 EKLSDVG---CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT--Y-NSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 358 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
..+.+.. .+.++..+..++..+...|+.++|...+++..+.. |+... + ..........++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4443321 13588889999999999999999999999999863 33321 1 111122234578888999998887
Q ss_pred hCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 432 STRFRPTV--ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 432 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+.. +.++ .....+.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 752 2244 566688999999999999999999644444478888888999999999999999999998765
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=8.5e-14 Score=130.35 Aligned_cols=130 Identities=13% Similarity=-0.011 Sum_probs=69.2
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH--hhH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN---YNTILAAFCKNGNADQALEIFEKLSDVGCPPNV--SSY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~ 372 (534)
++..+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+.. |.++ ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 44555555555566666666666666555542 22211 0111111222345555666666555542 4444 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 373 NTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
..+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666666666666666666663222223556655666666666666666666666654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=6e-17 Score=144.10 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=117.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 269 ILISSLCRDGKTEDAVDVLRAAKEKG-LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
.+...+...|++++|+++++...... .+.+...+..+.......++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56788889999999999997655443 23455566667777888999999999999998875 3356667777776 689
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 348 GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG-IEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
+++++|..+++...+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 4577788888999999999999999999987542 345778888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 427 LVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+++..+.. +.+......++..+...|+.+++.++++...+.. +.|+..+..++.++...|++++|..+++++.+.+|.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999863 2257788899999999999999999998888764 445667889999999999999999999999999999
Q ss_pred chHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 507 SRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 507 ~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++..+..++.++...|+.++|.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999998754
No 47
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=7.4e-13 Score=111.79 Aligned_cols=436 Identities=11% Similarity=0.082 Sum_probs=228.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
+..+....++..|+.+++-....+-.....+-..+..++.+.|++++|...+..+...+.++...+..++-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 67788889999999999887654433333455567788899999999999999998877777888888888888889999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM- 202 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~- 202 (534)
+|..+-.+..+ ++-....++..-.+.|+-++-....+.+.+. ..--..|+......-.+.+|++++.++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887666432 3334445555556666666655555554321 122334444444445566666666554
Q ss_pred ---------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047017 203 ---------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267 (534)
Q Consensus 203 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (534)
++.+..-++-+.++++-.... ++.++...|..+....+.=+-..|.+-.+.+...+.. .
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---- 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---- 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c----
Confidence 222222222222222222222 2222233333322222221112222222222221100 0
Q ss_pred HHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 268 SILISSLCR-----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILA 342 (534)
Q Consensus 268 ~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 342 (534)
...+.-.++ ..+-+.|++++--+.+. -+.....++--|.+.++..+|..+.+.+... ++.-|-.-..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgv 324 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGV 324 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHH
Confidence 001111111 12234444444433332 1223334555567777777777776654321 2222222222
Q ss_pred HHHhCC-------CHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 343 AFCKNG-------NADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 343 ~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
.+...| ...-|.+.|+-.-+++...|. .--..++..+.-..++++++.+++.+..--...|...+ .+..++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHH
Confidence 222222 233444444444333322222 12334444445555677777777766654323333333 456667
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 493 (534)
+..|++.+|.++|-++....++.+..-...|+++|.+.++++.|.+++-++ +.+.+.. ....+.+-|.+.|.+=-|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766654444433333345667777777777776655444 2222222 233445667777777777
Q ss_pred HHHHHHHHHcCCCc
Q 047017 494 MELANALVSMHAIS 507 (534)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (534)
-+.|+.+...+|.+
T Consensus 481 aKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 481 AKAFDELEILDPTP 494 (557)
T ss_pred HHhhhHHHccCCCc
Confidence 77777777666643
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.6e-13 Score=127.72 Aligned_cols=285 Identities=14% Similarity=0.071 Sum_probs=169.4
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYN--IMIGSLCSRGMIESA 160 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a 160 (534)
...|+++.|.+.+.......+.....+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 44699999998888766653322333444455668999999999999999876 56654333 346788899999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH-------hhHH
Q 047017 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV-------ISYN 233 (534)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 233 (534)
...++++.+.+ |.++.....+...|.+.|++++|.+++..+ .+....++. ..|.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l------------------~k~~~~~~~~~~~l~~~a~~ 233 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSM------------------AKAHVGDEEHRAMLEQQAWI 233 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHHHHH
Confidence 99999999886 778888999999999999999999888876 333222111 1122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG 313 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (534)
.++.......+.+...++++.+... .+.++.....++..+...|+.++|...+++..+. ++++... ++.+....+
T Consensus 234 ~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~ 308 (398)
T PRK10747 234 GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTN 308 (398)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCC
Confidence 2222222333334444444443222 1224445555555555556666665555555542 2233211 122222335
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 314 RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+.+++.+..+...+.. +.|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|..+++
T Consensus 309 ~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 309 NPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred ChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 334444555555555555555555555555543 3455555555555555555555555555
Q ss_pred HHH
Q 047017 394 EML 396 (534)
Q Consensus 394 ~~~ 396 (534)
+..
T Consensus 386 ~~l 388 (398)
T PRK10747 386 DGL 388 (398)
T ss_pred HHH
Confidence 443
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.2e-14 Score=124.75 Aligned_cols=451 Identities=11% Similarity=0.030 Sum_probs=313.3
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
+..-+..+.+-+..+.++..|.-+-+++.... .++.....+++++.-.|++++|..++..-.-. ..|..+......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 34455566666677788888988888888775 66666777889999999999998887765433 4578888888999
Q ss_pred HHcCCCHHHHHHHHHHHHhC--CCCCCHhh---------------HHHH-------HHHHHhcCCHhHHHHHHHHhcccc
Q 047017 151 LCSRGMIESAFKVFDQLLRD--NCKPTVIT---------------YTIL-------IQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
+.+..+++.|..++...... .+.-+..+ -+.- ...|....+.++|...|.+.....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D 171 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD 171 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc
Confidence 99999999999998832110 00000000 0001 122334445556666655542222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH-HH-hcC-CHHHHHHHHHHHHH----------------CCCCCChhhH
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRT-LL-NMG-KWEEGEKLMTEMIS----------------RGLEPNVVTY 267 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~-~~~~a~~~~~~~~~----------------~~~~~~~~~~ 267 (534)
...++ .++.+.....-.....|..+... +. -.+ +.+....+|+.... .+..-+....
T Consensus 172 ~~c~E----a~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll 247 (611)
T KOG1173|consen 172 AKCFE----AFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL 247 (611)
T ss_pred hhhHH----HHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence 21111 12222221111111112111110 00 111 11112222221100 0122344555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
..-..-+...+++.+..++.+...+.. ++....+..-+.++...|+..+-..+-.++++. .|..+.+|-+++..|...
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence 566677788899999999999999874 556667777777888999998888888888887 466788999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 348 GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
|+.++|++.|.+..... +.=...|..+...+...+..++|+..+..+.+. ++-...-+-.+..-|.+.++.+.|.++|
T Consensus 326 ~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred cCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998764 445578999999999999999999999888764 2222222334455678899999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK--GCK----PNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
....... +.|+...+-+.......+.+.+|..+|+..+.. .+. --..+++.|+.+|.+.+.+++|+..+++.+
T Consensus 404 ~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 404 KQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988752 446778888888888889999999999988741 111 134568899999999999999999999999
Q ss_pred HcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 502 SMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 502 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
...|.+++++..++.+|..+|+.+.|++.+.|
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999999998865
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.70 E-value=5.1e-11 Score=108.70 Aligned_cols=483 Identities=13% Similarity=0.120 Sum_probs=274.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVAN-GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+..|...++.+..+|+...-+..|++++.. .+.....+|...+......+-++-+..+++..++.. +..-...+..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~~eeyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEAREEYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 445677777788899999999999987763 344566778888888888888888999999888764 3345666777
Q ss_pred HHhcCCHHHHHHHHHHHHhCC------CCCChh--------------------------------------hHHHHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRG------FSPDVV--------------------------------------TYNIMIGSL 151 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~--------------------------------------~~~~l~~~~ 151 (534)
+++.+++++|.+.+...+... .+.+.. .|.+|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 888888888887777664321 011122 356666666
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----------------C------HhHHHHHHHHh-------
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----------------Q------TDKAMKLLDEM------- 202 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~------~~~a~~~~~~~------- 202 (534)
.+.|.+++|..+|++.++. ..+..-|..+.++|..-. + ++-....|+.+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 6666666666666666543 222223333333332111 0 11111112111
Q ss_pred -------------------cccccCChHHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 203 -------------------GMCKKGMVGQAFQFVRSLESRGCQP------DVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 203 -------------------~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
.-...|+..+....+.++... +.| -...|..+...|-.+|+.+.|..+|++..+
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 223344455555555554432 122 123466667777777777777777777765
Q ss_pred CCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-----------------CHhcHHHHHHHHHhcCCHHH
Q 047017 258 RGLEPN---VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP-----------------DAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 258 ~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~ 317 (534)
...+-- ..+|-..+..-.+..+++.|..+++.+....-.| +...|...++.--..|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 532211 2344444445556667777777776655321110 12233334444445667777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHh---cCCHHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWS---SGDKIRALGMIS 393 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 393 (534)
...+++++++..+. .+......+..+.....++++.++|++-+..--.|+. ..|+..+.-+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77777777766433 3443333444455566677777777776655323443 355555444432 236788888888
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 394 EMLSKGIEPDEI--TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 394 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
++++ +.+|... .|......-.+.|-...|++++++.... +++. ...|+..|.--...=-+.....+++++++.
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~- 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES- 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-
Confidence 8888 4555432 2222223333567778888888887553 3332 345666665444433345556777777775
Q ss_pred CCCCHHHHH---HHHHHHHccCCHHHHHHHHHHHHHc-CCC-chHH---HHHHHhhcchHHHHHHhhhh
Q 047017 470 CKPNETTYV---LLIEGIGYGGWRAEAMELANALVSM-HAI-SRDT---FKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 470 ~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~---~~~l~~~~~~~~~~~~~~~~ 530 (534)
-|+...-. .....=.+.|..+.|+.+|.-..+. +|. +++. |...-.-+....-++|+.++
T Consensus 652 -Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 652 -LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred -CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34443333 3344455778888998888888775 332 2233 33333333334445555443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=1.4e-13 Score=114.67 Aligned_cols=316 Identities=14% Similarity=0.119 Sum_probs=234.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHH
Q 047017 210 VGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN---VVTYSILISSLCRDGKTEDAVDV 286 (534)
Q Consensus 210 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 286 (534)
.++|..+|.+|.+.. +.+..+..+|.+.|.+.|..+.|+++...+....--+. ......|..-|...|-++.|+.+
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334444444445532 33556667889999999999999999999887521111 22455677889999999999999
Q ss_pred HHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 287 LRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI----VNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++.++..
T Consensus 130 f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 130 FNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 999988642 35567889999999999999999999999887544332 3466677777788899999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY 442 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (534)
.+ |..+..-..+...+...|+++.|.+.++...+.+..--..+...|..+|...|+.++...++.++.+.. +....-
T Consensus 209 a~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~ 285 (389)
T COG2956 209 AD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAE 285 (389)
T ss_pred hC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHH
Confidence 75 667777778889999999999999999999998655556788899999999999999999999998863 344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCC---------chHH
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY---GGWRAEAMELANALVSMHAI---------SRDT 510 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~---------~~~~ 510 (534)
..+...-....-.+.|..++.+-+.. .|+...+..++..... .|...+-...+..|+..... ..-.
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~ 363 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFT 363 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCc
Confidence 45555555556667777777666665 6888888888887653 34566666666666653322 1123
Q ss_pred HHHHHhhcchHHHHHHhhhhhc
Q 047017 511 FKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 511 ~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-..+-+..++++.|+....+.+
T Consensus 364 a~~l~W~CPsC~~W~TikPir~ 385 (389)
T COG2956 364 AHTLYWHCPSCRAWETIKPIRG 385 (389)
T ss_pred ceeeeeeCCCcccccccCCccc
Confidence 3346677788888887766554
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=8.4e-15 Score=133.74 Aligned_cols=292 Identities=12% Similarity=0.034 Sum_probs=176.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHHH
Q 047017 208 GMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--EPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 208 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
-+..+|+..|.++... +.-+..+...+..+|...+++++|.++|+.+.+... --+..+|.+.+--+ .+.-+--.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QDEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---HhhHHHHH
Confidence 3566667777664333 233345556667777777777777777777766521 01344555544332 12112222
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
+-+.+.+.. +..+.+|..++.+|.-.++.+.|++.|+++++.+ +....+|..+..-+.....+|.|...|+.+....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 222333322 3356677777777777777777777777777653 2255666666666777777777777777776543
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
+-+-.+|-.+...|.++++++.|+-.|+++.+.+ +-+......++..+.+.|+.++|+.+++++...+.. |+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 3344445556666777777777777777776643 224455556666667777777777777777665333 33333344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+..+...+++++|+..++++.+.- +-+..++..+++.|.+.|+.+.|+..|--+.+++|....
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555666677777777777776652 224555666677777777777777777777777766554
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.5e-14 Score=129.74 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=225.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 242 MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL--TPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.-+..+|+..|...... +.-.......+..+|...+++++|.++|+.+.+... .-+..+|...+.-+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34578999999995554 233456778899999999999999999999987521 1255667776654432 2223
Q ss_pred HHH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 320 EFL-DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 320 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
..+ +.+.+.. +..+.+|..++.+|.-+++.+.|++.|+++.... |....+|+.+..=+....++|.|...|+.++..
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 333 4444443 5678999999999999999999999999999875 447788888888899999999999999998864
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 399 GIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 399 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
.| +-..|..++..|.+.++++.|+-.|+++.+.++. +.+....+...+.+.|+.++|+.+++++...+.. |+..-
T Consensus 485 --~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 485 --DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred --CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 33 3355667888899999999999999999986433 6677778888999999999999999999988755 55555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
..-+..+...+++++|...++++.+.-|....++..++++|...|+.+.|...++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 5567778889999999999999999999999999999999999999998876653
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=8.6e-13 Score=110.05 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=72.7
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcCCCHHHH
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD---VVTYNIMIGSLCSRGMIESA 160 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a 160 (534)
-.++.++|..+|-++.+.++....+...|...|.+.|..+.|+.+.+.+.+..--+. ......|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 346677777777777776676777777777777777777777777777765411110 12334455666677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 161 FKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.+|..+.+.+ ..-......|+..|-...++++|++.-+++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L 167 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL 167 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777766544 333445555556665555555555554443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.9e-12 Score=110.32 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=231.2
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
...|++.+|.+++.+..+.+-. ....|..-+.+..+.|+.+.+-.++.++.+....++..............|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3456666666666665665433 344566667788889999999999999988744556677778888899999999999
Q ss_pred HHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHH
Q 047017 285 DVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV-------NYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
.-+.++.+.+.. .+........+|.+.|++.....++..+.+.+.-.+.. ++..++.-....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999987643 67788889999999999999999999999988766653 4555666555566666666788
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047017 358 EKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP 437 (534)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (534)
+..... ...++..-..++.-+.++|+.++|.++..+..+.+..|+.. . .-.+.+-++...-.+..++-.+. .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 877665 36678888899999999999999999999999987777622 2 22455778888888888777655 234
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
++..+..|...|.+.+.|.+|...|+..++. .|+..+|..+..++.+.|+..+|.+..++.+..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5678889999999999999999999988876 789999999999999999999999999988753
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.2e-11 Score=103.46 Aligned_cols=284 Identities=13% Similarity=0.080 Sum_probs=222.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH
Q 047017 224 GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY 302 (534)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (534)
-.+.|......+...+...|+.++|+..|+..... .|+ ..........+...|+.+....+...+.... .-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 35667888999999999999999999999998765 332 3333344445678899998888887776542 1133334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047017 303 DPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382 (534)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (534)
..-+.......+++.|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+.+.... |.+...|..++.+|...
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 344445566888999999999988875 4466677777788899999999999999998875 78899999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHH
Q 047017 383 GDKIRALGMISEMLSKGIEPDEITYNSLI-SCLC-RDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 459 (534)
|...+|..+-+..... ++.+..+...+. ..+. ...--++|.+++++.... .|+ ....+.+...|...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 9999999888777664 455667776663 3332 223347899999887764 555 445677888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
.++++.+.. .||......|.+.+...+.+++|...|..+++.+|.+..+...+-+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 999999875 68999999999999999999999999999999999998777766443
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=4.6e-11 Score=109.25 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=257.7
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+.+..+..-+--+...+++...++..+.+++. .+...++....+-.+...|+.++|..........++.+...|..+.-
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 5 PKENALFRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 33444444444566788999999999999884 35566676666667778899999999999999888889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.+....++++|++.|..+...+ +.|...|.-+.-.-.+.++++.....-..+.+.. +.....|..++.++.-.|++..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874 4467788877777788899988888888887763 4455678888888888999999
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcC-CCCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCChh-h
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRG-CQPDVISYNMLL------RTLLNMGKWEEGEKLMTEMISRGLEPNVV-T 266 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 266 (534)
|..+++.. .+.. ..|+...+.... ......|.++.|++.+...... ..|.. .
T Consensus 162 A~~il~ef------------------~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~ 221 (700)
T KOG1156|consen 162 ALEILEEF------------------EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAF 221 (700)
T ss_pred HHHHHHHH------------------HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHH
Confidence 98888775 2211 234444443322 2345567777777766554433 11222 2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH-HHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL-ISAYCKDGRLDLAI-EFLDYMISDGCLPDIVNYNTILAAF 344 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 344 (534)
-..-...+.+.++.++|..++..++..+ ||...|... ..++.+-.+.-++. .+|....+. .|.......+-...
T Consensus 222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 222 EETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred hhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 2334455677788888888888887763 444444433 33333222323333 455544432 22221111111111
Q ss_pred HhCCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--
Q 047017 345 CKNGNA-DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS----KG----------IEPDEITY-- 407 (534)
Q Consensus 345 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~-- 407 (534)
....++ +..-.++....+.|+|+- +..+...|-.....+-..++...+.. .| -+|....|
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 111222 233344455555554432 22222222211111111111111110 00 13333322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
..++..+-+.|+++.|..+++..+++ .|+ +..|..-.+.+...|++++|..+++++.+.+ .+|..+-..-++-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 33444555667777777777666654 344 2234344456666677777777777766655 2344444455555666
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 047017 487 GGWRAEAMELANALVSMH 504 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~ 504 (534)
.+..++|.++..+..+.+
T Consensus 452 An~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREG 469 (700)
T ss_pred ccccHHHHHHHHHhhhcc
Confidence 666777776666666655
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.5e-12 Score=109.86 Aligned_cols=287 Identities=15% Similarity=0.150 Sum_probs=187.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN 233 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (534)
.|+|.+|+++..+..+.+ +.....|..-+++.-..|+.+.+-.++.++ .+....++....-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~ea------------------ae~~~~~~l~v~l 157 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEA------------------AELAGDDTLAVEL 157 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH------------------hccCCCchHHHHH
Confidence 577777777777766665 333445555556666666666666666654 3322233444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-------cHHHHH
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY-------SYDPLI 306 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~ 306 (534)
.........|++..|..-+.++.+.+.. ++........+|.+.|++.....++..+.+.+.-.+.. ++..++
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 5666677777777777777777766433 55666777777777777777777777777776554433 334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKI 386 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 386 (534)
+-....+..+.-...++..... ...++..-..++.-+.++|+.++|.++..+..+.+..|. ......+.+.++..
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~ 311 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPE 311 (400)
T ss_pred HHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCch
Confidence 4444444444444455555443 244566677777778888888888888888777654443 22223445666777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 387 RALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.-++..+...+. .+.++..+..|+..|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.+..++.+
T Consensus 312 ~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 312 PLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777777666654 3445577778888888888888888888877664 6788888888888888888888888887776
Q ss_pred Hc
Q 047017 467 EK 468 (534)
Q Consensus 467 ~~ 468 (534)
..
T Consensus 389 ~~ 390 (400)
T COG3071 389 LL 390 (400)
T ss_pred HH
Confidence 53
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=4.5e-11 Score=109.30 Aligned_cols=423 Identities=13% Similarity=0.127 Sum_probs=289.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+..++.+ ...+++...++..+.+.+..|....+.....-.+...|+.++|........... ..+.++|+.+.-.+...
T Consensus 11 F~~~lk~-yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKC-YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh
Confidence 3444444 467899999999999999778888888888888888999999999988887754 33778999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 047017 155 GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM 234 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 234 (534)
.++++|++.|..+...+ +.|...+..+.-.-++.|+++.....-... ... .+.....|..
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~L------------------Lql-~~~~ra~w~~ 148 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQL------------------LQL-RPSQRASWIG 148 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH------------------HHh-hhhhHHHHHH
Confidence 99999999999999987 778888988888878888888776665544 222 1224556788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHH------HHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRG-LEPNVVTYSILI------SSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (534)
++.++.-.|++..|..+++...+.. ..|+...+.... ......|..+.|.+.+..-... +......-..-..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHH
Confidence 8888888999999999999988764 245555544322 2345678888888877665443 1112222334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-
Q 047017 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYN-TILAAFCKNGNADQAL-EIFEKLSDVGCPPNVSSYNTMFSALWSSGD- 384 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 384 (534)
.+.+.+++++|..++..++..+ ||...|. .+..++.+-.+..++. .+|....+. +|-...-..+--......+
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchh
Confidence 7889999999999999999874 5555444 4444443333444444 666666553 2222222222111222223
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hCC----------CCCChhhHH--H
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME--------STR----------FRPTVISYN--I 444 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~ 444 (534)
.+..-.++..+.+.|+++-. ..+...|-.-...+ ++++.. ..| -+|....|. .
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred HHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 33444566777787776543 33333332222111 222221 110 145555454 4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
++..+-..|+++.|..+++.+++. .|+ .+.|..-++.+.+.|+.++|..+++++.+.+..+...-..-++.....++
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence 677788999999999999999876 444 45566667899999999999999999999887666555466777777888
Q ss_pred HHHhhhhhcc
Q 047017 524 YKEISHLATK 533 (534)
Q Consensus 524 ~~~~~~~~~k 533 (534)
.++|..+++|
T Consensus 455 i~eA~~~~sk 464 (700)
T KOG1156|consen 455 IEEAEEVLSK 464 (700)
T ss_pred cHHHHHHHHH
Confidence 8888887653
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=1.7e-11 Score=114.21 Aligned_cols=133 Identities=15% Similarity=0.020 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP-TVISYNIIILGFC 450 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 450 (534)
|......+...++.++|...+.++... .+.....|......+...|...+|.+.|...... .| ++.....+..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 444555666677777777777666654 2344556666666777777778887777776654 33 3556667777777
Q ss_pred hcCChHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 451 KTRRINESIE--VLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 451 ~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+.|+..-|.. ++..+++.++. +...|..++..+...|+.++|.+.|+.+.++.+.+|
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7777766666 77777777643 677777788888888888888888887777766555
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.9e-10 Score=104.18 Aligned_cols=443 Identities=16% Similarity=0.136 Sum_probs=255.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
....=+..+...|++++|++...+++..+ +.+..++..-+-++++.+++++|+.+.+.-......+... ..-+.+..+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yr 91 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYR 91 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHH
Confidence 44455677889999999999999999876 7788889998999999999999997666544322222222 344556678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHhHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVI--TYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~ 196 (534)
.+..++|...++... +.+..+...-...+.+.|++++|..+|+.+.+.+. ++.. .-..++.+- -...+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH----HhhhHH
Confidence 999999999998332 22445677778889999999999999999988763 3222 112222111 001110
Q ss_pred HHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCh---
Q 047017 197 KLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNMGKWEEGEKLMTEMISRG-------LEPNV--- 264 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~--- 264 (534)
+.+ .....| +-..+......+...|++.+|+++++...+.+ -.-+.
T Consensus 163 -~~q---------------------~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie 220 (652)
T KOG2376|consen 163 -LLQ---------------------SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE 220 (652)
T ss_pred -HHH---------------------hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH
Confidence 111 111112 11222333445677899999999998873221 01011
Q ss_pred ----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH---HHHhcCCH-H-HHHHHHHHHHHCC------
Q 047017 265 ----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS---AYCKDGRL-D-LAIEFLDYMISDG------ 329 (534)
Q Consensus 265 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~------ 329 (534)
.....+...+...|+.++|..++...++.+.. |........+ +...-.++ + .++..++......
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~ 299 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHH
Confidence 12345666677889999999999998887533 4322211111 11111111 1 1111121111100
Q ss_pred ----CCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCC
Q 047017 330 ----CLPDIVNY-NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW--SSGDKIRALGMISEMLSKGIEP 402 (534)
Q Consensus 330 ----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~ 402 (534)
-....... +.++..| .+..+.+.++....... .|. ..+..++..+. +...+..+..++....+....-
T Consensus 300 ~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~ 374 (652)
T KOG2376|consen 300 KLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEK 374 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCch
Confidence 00011111 1222222 33444444443333221 222 22333333322 2224667777777666542221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLV--------DMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK--GCKP 472 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 472 (534)
...+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+++.. .-.+
T Consensus 375 s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 375 SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 23444555666778899999988888 455544444 34455666677777777777777766641 1122
Q ss_pred CH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 473 NE----TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 473 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.. .++..++..-.+.|+-++|..+++++++.+|.+.+++..+.-.|...+
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD 506 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC
Confidence 22 233344444456788999999999999988888888888888777654
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=3.9e-11 Score=101.61 Aligned_cols=403 Identities=13% Similarity=0.116 Sum_probs=251.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
-..+..++...|++++|+..+..+.+.+ .++.+.+..+.-+..-.|.+.+|..+.+...+ ++-.-..++....+.
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHh
Confidence 3456778889999999999999988765 77888888888888889999999988776543 555556667777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCCHhHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTI-LIQATMLEGQTDKAMKL 198 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~ 198 (534)
|+-++...+.+.+... ...-.+|.......-.+++|+++|.+++..+ |+-...+. ++-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 8888777776666532 2344455555555567899999999988764 33333333 34456677777777666
Q ss_pred HHHhcccccCChHHHH-----------------HHHHHHHHcCCCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHH
Q 047017 199 LDEMGMCKKGMVGQAF-----------------QFVRSLESRGCQPDVISYNMLLRTLLN-----MGKWEEGEKLMTEMI 256 (534)
Q Consensus 199 ~~~~~~~~~~~~~~a~-----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~ 256 (534)
+.-. +.+-++..-|. .-...+...+.. . | ..+.-.++ .++-+.|++++--+.
T Consensus 208 l~vY-L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~ 281 (557)
T KOG3785|consen 208 LKVY-LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLM 281 (557)
T ss_pred HHHH-HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHH
Confidence 6543 11111111111 111111111100 0 1 11111222 233466777666555
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC-------HHHHHHHHHHHHHCC
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR-------LDLAIEFLDYMISDG 329 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~ 329 (534)
.. =+.....++-.|.+.++..+|..+.+.+.- .++.-|..-.-.+...|+ ..-|...|+..-..+
T Consensus 282 ~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa 353 (557)
T KOG3785|consen 282 KH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA 353 (557)
T ss_pred hh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc
Confidence 43 233445667778899999999988876532 233333222223333332 445666665554433
Q ss_pred CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 330 CLPDI-VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYN 408 (534)
Q Consensus 330 ~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (534)
..-|. .--..+..++.-..++++++.++..+..--.. |......++.+++..|++.+|+++|-.+....++.+..-..
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 22221 22334555556666789999888888776433 33344467889999999999999998877654454444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTV-ISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
.|.++|.+.++++.|++++-++.. +.+. .....++.-|.+.+.+--|.+.|..+...++.|
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 677899999999999988765542 2222 234456677888999888888888887765444
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=7e-11 Score=110.96 Aligned_cols=298 Identities=17% Similarity=0.174 Sum_probs=212.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN- 120 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 120 (534)
-....+...|++++|++.++..... +..........+..+.+.|+.++|..++..+...+|.+...|..+..+..-..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 3445678899999999999886543 45556777888999999999999999999999999999888888888873332
Q ss_pred ----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 121 ----QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI-ESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 121 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+.+...++|+++... .|.......+.-.+.....+ ..+...+..+...|+|+ +|..|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 577888999988776 45544443333333332233 34556677777888653 566666666644444444
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHc----------CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESR----------GCQPDV--ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN 263 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 263 (534)
.+++... ...+... .-+|+. .++..+...|...|++++|++.++..+... |+
T Consensus 163 ~~l~~~~--------------~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt 226 (517)
T PF12569_consen 163 ESLVEEY--------------VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PT 226 (517)
T ss_pred HHHHHHH--------------HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC
Confidence 4444433 1111111 123344 344666778889999999999999999883 44
Q ss_pred -hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------
Q 047017 264 -VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI-------- 334 (534)
Q Consensus 264 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------- 334 (534)
+..|..-++.+-..|++.+|.+.++.+...+.. |...-+..+..+.+.|+.++|.+++......+..|..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 677888889999999999999999999887543 6666667778888999999999999888776533221
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
......+.+|.+.|++..|++.|..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1224567788899999888887776644
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=1.9e-13 Score=113.92 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=205.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
-..+..+|.+.|.+.+|.+.++...+. .|-+.+|..+..+|.+..++..|+.++.+-++. .+-+........+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467889999999999999999998886 567778999999999999999999999998876 35556666677888889
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
.++.++|.++|+...+.. +.+++....+...|.-.++++.|+.+++++++.|+. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998875 778888888888899999999999999999999865 788899999999999999999999
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 427 LVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
|++....--.|+ ..+|..+.......|++..|.+.|+-.+..+.. +.+.++.|.-.-.+.|+.++|+.+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 988876533343 567888888888899999999999999887644 67888988888889999999999999999988
Q ss_pred CCchHHHHHH
Q 047017 505 AISRDTFKRL 514 (534)
Q Consensus 505 ~~~~~~~~~l 514 (534)
|..-+....+
T Consensus 460 P~m~E~~~Nl 469 (478)
T KOG1129|consen 460 PDMAEVTTNL 469 (478)
T ss_pred ccccccccce
Confidence 8665544433
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.5e-12 Score=108.74 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=201.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
-+.+..+|.+.|-+.+|.+.++..++. .|-+.||..+...|.+..+++.|+.++.+-.+. ++.+......+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999998887 677889999999999999999999999998876 44466666677888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGM 391 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 391 (534)
.++.++|.++++...+.. +.+......+...|...++++.|+.+|+++...| ..++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999874 6678888888899999999999999999999998 56899999999999999999999999
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 392 ISEMLSKGIEPD--EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 392 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
|.+.+..-..|+ ..+|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.+.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999887644444 4678888888889999999999999888763 335778899988889999999999999998775
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=2.2e-12 Score=125.61 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=160.2
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA---------NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (534)
+.+++|..+|+++.+.+|.+..++..+..++... +++++|...++++.+.+ +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4577888888888887777777777776655422 34678888888887763 3356677777777778888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLL 236 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (534)
+++|...|+++.+.+ |.+...+..+..++...|++++|...++++ ...+.. +...+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A------------------l~l~P~-~~~~~~~~~ 413 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC------------------LKLDPT-RAAAGITKL 413 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HhcCCC-ChhhHHHHH
Confidence 888888888888775 556677777788888888888888888776 333221 222333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++.... +.+......+...|...| +
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--H
Confidence 4566677888888888877665322234456667777778888888888887765542 223333444555556666 4
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 317 LAIEFLDYMISDG-CLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 317 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 6666666655431 01111112 33444556666666555 6666543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.57 E-value=8.7e-11 Score=109.66 Aligned_cols=437 Identities=13% Similarity=0.049 Sum_probs=249.3
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHH
Q 047017 68 CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNI 146 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ 146 (534)
+..+...|..+.-++...|+++.+.+.|+......-...+.|..+...+...|.-..|..+++......-.| |...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345667777777777777777777777777765555556677777777777777777777777655442123 2333333
Q ss_pred HHHHH-HcCCCHHHHHHHHHHHHhC--C--CCCCHhhHHHHHHHHHhc----CCHhHHHHHHHHhcccccCChHHHHHHH
Q 047017 147 MIGSL-CSRGMIESAFKVFDQLLRD--N--CKPTVITYTILIQATMLE----GQTDKAMKLLDEMGMCKKGMVGQAFQFV 217 (534)
Q Consensus 147 l~~~~-~~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~a~~~~ 217 (534)
....| .+.+..++++.+-.+++.. + -......+..++-+|... ...++=.. ...++++.+
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~-----------~h~kslqal 467 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDA-----------LHKKSLQAL 467 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHH-----------HHHHHHHHH
Confidence 33333 3456666666666665541 1 012223344444333321 11111111 112344555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047017 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTP 297 (534)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (534)
++..+.+.. |+.....+.--|...++.+.|.+..++..+.+...+...|..++-.+...+++.+|+.+.+.....- ..
T Consensus 468 e~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred HHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 555554432 3333333444456677778888877777777555677777777777777778888887777766531 11
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHhhHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV--GCPPNVSSYNTM 375 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l 375 (534)
|......-+..-..-++.+++......+... |...- ...+.++-....+....+.-. .......++..+
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 1111112222223356666666555554432 00000 000111111111111111100 001112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 376 FSALWSSGDKIRALGMISEMLSKGI--EPD------EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
.......+ ..+..-.. +..... .|+ ...|......+.+.+..++|...+.+.... .+.....|.....
T Consensus 617 s~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 617 SSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGL 692 (799)
T ss_pred HHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhH
Confidence 22111111 00000000 111111 122 123455666788889999999888888765 2335667777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH--HHHHHHHcCCCchHHHHHHHhhcchHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME--LANALVSMHAISRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 525 (534)
.+...|.+.+|.+.|..++..++. +......++.++...|+..-|.. ++..+++.+|.++++|+.++.++.+.|+.+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 888999999999999999887533 67778899999999998888887 999999999999999999999999999999
Q ss_pred Hhhhhh
Q 047017 526 EISHLA 531 (534)
Q Consensus 526 ~~~~~~ 531 (534)
+|.+-+
T Consensus 772 ~Aaecf 777 (799)
T KOG4162|consen 772 QAAECF 777 (799)
T ss_pred HHHHHH
Confidence 887654
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=5.8e-12 Score=109.72 Aligned_cols=201 Identities=12% Similarity=0.069 Sum_probs=151.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
....+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++......+.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45677888889999999999999999988764 55677888888889999999999999999888887788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 116 FCKANQIELANKVLDRLRSRGFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
+...|++++|.+.++++...... .....+..+..++...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999888765222 234456667777888888888888888887764 4455667777777777777777
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
|...+++. ... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERY------------------QQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777665 222 233455555666666777777777777666543
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=1.7e-11 Score=106.82 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=130.8
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSA 378 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (534)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445556666666777777777776666543 3345566666667777777777777777766653 4455666666677
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 047017 379 LWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457 (534)
Q Consensus 379 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 457 (534)
+...|++++|...++++..... +.....+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665321 1223455556667777777777777777776642 2235566667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
|...++++.+.. +.+...+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 777777777652 335555666667777777777777777766554
No 70
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-10 Score=103.51 Aligned_cols=427 Identities=11% Similarity=0.040 Sum_probs=238.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
...+..|+++.|+.+|.+.+..+ |++...|..-..++...|++++|++--.+..+..|.-+..|.....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45566777777777777777766 45777777777777777777777777777776666667777777777777777777
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-----HHHHhcCCHhHHHHH
Q 047017 125 ANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILI-----QATMLEGQTDKAMKL 198 (534)
Q Consensus 125 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~ 198 (534)
|+..|.+-++. .| +...+..+..++ ..+.+. +.. ..++..|..+. +.+.....+..-++.
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 77777777665 33 344455555554 111111 111 11111121111 111111111111111
Q ss_pred HHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCC---------------
Q 047017 199 LDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI-SRGLEP--------------- 262 (534)
Q Consensus 199 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~--------------- 262 (534)
+..-. .. ...... ++.....+... ...+.. ....-..+. ..+..|
T Consensus 155 ~~~~p----~~-----------l~~~l~-d~r~m~a~~~l-~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 155 IQKNP----TS-----------LKLYLN-DPRLMKADGQL-KGVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred hhcCc----Hh-----------hhcccc-cHHHHHHHHHH-hcCccc--cccccccccCCCCCCcccccCCCCCccchhH
Confidence 11110 00 000000 11111110000 000000 000000000 000001
Q ss_pred -------ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047017 263 -------NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335 (534)
Q Consensus 263 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (534)
-..-...+.+...+..+++.|++.+....+.. .+..-++....+|...|.+..+...-....+.|.. ...
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ra 292 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRA 292 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHH
Confidence 11124456666677778888888888777764 35555666777777777777777666666555421 111
Q ss_pred H-------HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 047017 336 N-------YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE-ITY 407 (534)
Q Consensus 336 ~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 407 (534)
- +..+..+|.+.++++.++..|++.......|+ ...+....+++........-. .|.. .-.
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~ 361 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEE 361 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHH
Confidence 1 22234456666778888888887655432222 122233444555444444332 2222 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
..-...+.+.|++..|...|.+++... +.|...|....-+|.+.|.+..|+.=.+..++.+ ++....|..=+.++...
T Consensus 362 r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 362 REKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHH
Confidence 233566778888888888888888775 4467788888888888888888888888877764 22445555555666667
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
.+++.|.+.|++.++.+|.+......+.+|+...
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 7888888888888888888888888888877753
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=1.4e-08 Score=93.25 Aligned_cols=458 Identities=12% Similarity=0.084 Sum_probs=272.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HhcC-----CHhHHHHHHHHHHHcCCCChh
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKF---FQER-----KSNKAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-----~~~~a~~~~~~~~~~~~~~~~ 107 (534)
+...|...|..... .-..+-..+|+++.+. .+.+...|..-++.- .+.. .++..-..|+...-.-..-+.
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpR 103 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPR 103 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCH
Confidence 34455555554433 2233455667776664 355666666555321 1111 122222333333222234556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSR-GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQAT 186 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (534)
+|...+.....+|++......|++.+.. .+......|...+......|-++.+..+|++.++.. +..-...+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 7888888888888888888888887654 223345667778887778888888888888887643 33355666777
Q ss_pred HhcCCHhHHHHHHHHhc-----ccccCCh-HHHH-HHHHH---------------HHHcCC--CCCH--hhHHHHHHHHH
Q 047017 187 MLEGQTDKAMKLLDEMG-----MCKKGMV-GQAF-QFVRS---------------LESRGC--QPDV--ISYNMLLRTLL 240 (534)
Q Consensus 187 ~~~g~~~~a~~~~~~~~-----~~~~~~~-~~a~-~~~~~---------------~~~~~~--~~~~--~~~~~l~~~~~ 240 (534)
.+.+++++|.+.+..+. ....|.. .+-+ .+++- +...|+ -+|. ..|+.|..-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 78888888888877761 0111110 0000 01111 111111 1222 35788999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC----------------------ChhHHHHHHHHHHHCCC---
Q 047017 241 NMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG----------------------KTEDAVDVLRAAKEKGL--- 295 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~--- 295 (534)
+.|.++.|.++|++.+..- ....-|+.+...|+... +++-....|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999987752 23334444444443221 12223333333333210
Q ss_pred --------CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 296 --------TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD------IVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 296 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
+.+...|..-. -+..|+..+-...+.+++.. +.|. ...|..+...|-..|+.+.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 01111111111 12346677777777777764 2222 3568888999999999999999999998
Q ss_pred hCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHH
Q 047017 362 DVGCPPN---VSSYNTMFSALWSSGDKIRALGMISEMLSKGIE----------P-------DEITYNSLISCLCRDGMVD 421 (534)
Q Consensus 362 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~ 421 (534)
+...+.- ..+|...+..-.+..+++.|+.+++.+....-. | +...|..+++.....|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7643322 345666667777888999999998887643111 1 1234555666666788899
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc---cCCHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGY---GGWRAEAMELA 497 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~ 497 (534)
....+++++++..+. ++.+....+..+-...-++++.+++++-+..-..|+ ..+|+..+..+.+ .-+.+.|+.+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999887554 444444444455566778889999888877543444 3455555444332 23788999999
Q ss_pred HHHHHcCC
Q 047017 498 NALVSMHA 505 (534)
Q Consensus 498 ~~~~~~~~ 505 (534)
+++++.-|
T Consensus 574 EqaL~~Cp 581 (835)
T KOG2047|consen 574 EQALDGCP 581 (835)
T ss_pred HHHHhcCC
Confidence 99999545
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=3e-11 Score=117.71 Aligned_cols=269 Identities=12% Similarity=0.098 Sum_probs=189.8
Q ss_pred cCCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHH---------cCCCHHHHHHHHH
Q 047017 101 YGEPDVFAYNALISGFCK-----ANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLC---------SRGMIESAFKVFD 165 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~a~~~~~ 165 (534)
..+.+..+|...+.+... .+++++|.+.|++..+. .|+ ...|..+..++. ..+++++|...++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 335555655555554322 13467899999999987 554 556666655544 2345899999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 047017 166 QLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKW 245 (534)
Q Consensus 166 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (534)
++.+.+ |.+...+..+..++...|++++|...++++ ...+ +.+...+..+..++...|++
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A------------------l~l~-P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQA------------------NLLS-PISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 999886 778888999999999999999999999987 4443 33567788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 246 EEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM 325 (534)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (534)
++|+..++++.+.... +...+..++..+...|++++|...++++.+...+.++..+..+..++...|+.++|...+.++
T Consensus 389 ~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 389 EEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 9999999999987433 233334445556678999999999999887643335556777888889999999999999987
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 326 ISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
.... +.+......+...|...| +.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 468 STQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 7652 333445566666777777 47777777765531 11221222 44455556776666655 777765
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=1.8e-11 Score=97.60 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=160.0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.-......+.-.|++.|++..|..-++++++++ |.+..+|..+...|.+.|..+.|.+.|+.+.+..|.+..+.|....
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 445567778888999999999999999999886 6678888888889999999999999999999888888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
.++.+|++++|.+.|++......- .-..+|..+..+..+.|+++.|...|++.++.. +....+...+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 999999999999999988865222 235678888888888999999999999888875 555667777888888888888
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
.|...++.. ...+ .++..+.-..++.--..|+.+.+-+.=..+...
T Consensus 191 ~Ar~~~~~~------------------~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 191 PARLYLERY------------------QQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHH------------------Hhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 887777764 3333 366777777777777777777776665555544
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.7e-09 Score=92.55 Aligned_cols=405 Identities=11% Similarity=0.020 Sum_probs=261.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+...-...+.+|...++-..|.......... ......+.++..+.+.| +..++.--+......-|........++.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 5566677888999999999998876554432 12333344444333333 2222222222222211111111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--cCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC--SRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.-. .| +...-..|-...++|...+....+.+++ -.++-..|...+-.+... -.+.|+.....+...+...|+
T Consensus 173 l~v-~g----~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gd 247 (564)
T KOG1174|consen 173 LGV-NG----NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGD 247 (564)
T ss_pred Hhh-cc----hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcC
Confidence 111 11 1111112222223333333333333333 344444444444333322 357788889999999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSIL 270 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (534)
.++|+..|++. ... .| +..........+.+.|+++....+...+.... +-....|..-
T Consensus 248 n~~a~~~Fe~~------------------~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 248 YFQAEDIFSST------------------LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred chHHHHHHHHH------------------hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 99999999876 222 22 23334444555677899998888888776542 1233344444
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
+......++++.|+.+-++.++.+. .+...+..-..++...+++++|.-.|+.+.... |.+...|..++.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 4555677899999999998887642 255566666788899999999999999888763 56789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMF-SALWS-SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
.+|...-+...+. ++.+..++..+. ..+.. ...-++|.++++..+.. .|+ ....+.+...+...|..+.+..++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 9999888777665 366777776663 33332 23457899999888764 555 456778888899999999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 428 VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
++... ..||....+.|.+.+...+.+++|.+.|..+++.+++ +..+.
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~-~~~sl 508 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK-SKRTL 508 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc-chHHH
Confidence 99876 3788999999999999999999999999999987643 44443
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.50 E-value=6.4e-11 Score=94.51 Aligned_cols=208 Identities=17% Similarity=0.087 Sum_probs=179.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (534)
+...+.-.|.+.|+...|..-++++++.+ +.+..++..+...|.+.|..+.|.+.|+++.+.. |.+..+.|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567788999999999999999999985 5577889999999999999999999999999886 778899999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 459 (534)
..|.+++|...|+++.....-+ -..+|..++.|..+.|+++.|...|++..+.. +....+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998753222 34688899999999999999999999999873 224566778888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
-+++.....+. ++...+...|+.-...|+.+.+-++=..+.+..|.+++.-.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99999988765 78888888899999999999999999999999998875443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.46 E-value=1.1e-09 Score=103.13 Aligned_cols=431 Identities=16% Similarity=0.089 Sum_probs=264.2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI-MIGSLC 152 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 152 (534)
...-....+...|++++|++.++.....-..........+..+.+.|+.++|..+|..++++ .|+...|.. +..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHh
Confidence 33444566788899999999998877665666777888899999999999999999999988 556555554 444442
Q ss_pred c-----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC
Q 047017 153 S-----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 153 ~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 227 (534)
- ..+.+...++|+++...- |.......+.-.+....++.. .+..++......|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~-----------------~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKE-----------------RLDEYLRPQLRKGVPS 144 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHH-----------------HHHHHHHHHHhcCCch
Confidence 1 235677788888887653 332222222211111111211 1233344456677553
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISR----G----------LEPNV--VTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
+|+.+-..|.......-...++...... + -+|+. .++..+...|-..|++++|+++++..+
T Consensus 145 ---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 145 ---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred ---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666555555555666655432 1 12333 244666778889999999999999999
Q ss_pred HCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 292 EKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 292 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
++. +..+..|..-+..+-+.|++.+|...++.+...+ .-|...-+..+..+.+.|+.++|.+++....+.+..|....
T Consensus 222 ~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 222 EHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred hcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 984 2247788888999999999999999999999886 44777777888889999999999999999987654332221
Q ss_pred ------H--HHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CCCHH----------HHHHHHHHHHhc---CC----HH
Q 047017 372 ------Y--NTMFSALWSSGDKIRALGMISEMLSK--GI---EPDEI----------TYNSLISCLCRD---GM----VD 421 (534)
Q Consensus 372 ------~--~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~~~~~----------~~~~l~~~~~~~---g~----~~ 421 (534)
| ...+.+|.+.|++..|++.|..+.+. .+ .-|.+ +|..+++..-+. .. ..
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~ 379 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK 379 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 1 34567899999999998877766543 11 12222 233333221111 01 12
Q ss_pred HHHHHHHHHHhCCCC---C---------ChhhHHHHHHHH---HhcCChHHHHHHH-HHH----------HH-cCCCCCH
Q 047017 422 EAVGLLVDMESTRFR---P---------TVISYNIIILGF---CKTRRINESIEVL-AAM----------FE-KGCKPNE 474 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~---~---------~~~~~~~l~~~~---~~~g~~~~A~~~~-~~~----------~~-~~~~~~~ 474 (534)
.|.+++-.+-+.... + +..--..+..-. .+...-+++...- ++. .. .....|.
T Consensus 380 ~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 459 (517)
T PF12569_consen 380 GAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD 459 (517)
T ss_pred HHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC
Confidence 344444444322100 0 000000010000 0000111111100 000 00 0011111
Q ss_pred HHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 475 TTYVLLIEGIGYGG-WRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 475 ~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
. .++..+.+.. =.++|.++++-+.+..+...+++..--.+|...|+|--|.+-+.|
T Consensus 460 D---p~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 460 D---PLGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred C---ccHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1 1222333443 578899999999999999999999999999999999888877665
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=6.8e-11 Score=109.62 Aligned_cols=244 Identities=20% Similarity=0.191 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHH
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----N-CKPTVI-TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQA 213 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a 213 (534)
..+...+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A----------- 267 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA----------- 267 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------
Confidence 456667899999999999999999998865 2 123333 3445788899999999999998865
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHHHHHHhCCChhHHHHH
Q 047017 214 FQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-----GL-EPN-VVTYSILISSLCRDGKTEDAVDV 286 (534)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~ 286 (534)
+.+++.......+.-..+++.|..+|.+.|++++|...++...+. +. .|. ...++.++..+...+++++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 666665554444444567888888999999999998888776543 11 111 12345555666667777777777
Q ss_pred HHHHHHC---CCCC----CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhCCCHHH
Q 047017 287 LRAAKEK---GLTP----DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG-------CLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 287 ~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
++...+. -+.+ -..++..+...|...|++++|.++++.++... ..-....++.+...|.+.+.+.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 6654431 0111 12345555666666666666666665554321 01112234445555555555555
Q ss_pred HHHHHHHHhhC----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 353 ALEIFEKLSDV----G--CPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 353 A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
|.++|.+.... | .|.-..+|..|+..|...|+++.|.++.+.+
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55555443221 1 1112233444444444444444444444433
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3e-09 Score=95.69 Aligned_cols=400 Identities=13% Similarity=0.100 Sum_probs=219.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+-..|..-..++...|+|++|++=-.+..+.. |.-+..|...+.++.-.|++++|+..|.+-++..|.+...+..+..+
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA 113 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence 44557788889999999999999888877764 44578999999999999999999999999999999999999999888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMI-----GSLCSRGMIESAFKVFDQLLRDNCKPTVITY---TILIQATM 187 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~ 187 (534)
+. .+.+. +.. ..++..|..+. +.+.... +........+.+ |.+...| ..++.+..
T Consensus 114 ~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~----~~~~~l~~~~~~-p~~l~~~l~d~r~m~a~~ 176 (539)
T KOG0548|consen 114 YL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDP----AYVKILEIIQKN-PTSLKLYLNDPRLMKADG 176 (539)
T ss_pred hh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccH----HHHHHHHHhhcC-cHhhhcccccHHHHHHHH
Confidence 71 11111 111 11333333332 2222222 222222222222 1111111 11111111
Q ss_pred hcCCHhHH-HHHHHHhcccccCChH----HHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 188 LEGQTDKA-MKLLDEMGMCKKGMVG----QAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE 261 (534)
Q Consensus 188 ~~g~~~~a-~~~~~~~~~~~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 261 (534)
.....+.- ...-..+......... .......+... .....-..-...+++...+..+++.|++.+.......
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-- 254 (539)
T KOG0548|consen 177 QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-- 254 (539)
T ss_pred HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--
Confidence 11000000 0000000000000000 00000000000 0000012235667888888999999999999988874
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcH-------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSY-------DPLISAYCKDGRLDLAIEFLDYMISDGCLPDI 334 (534)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (534)
-+..-++....+|...|.+..+........+.|.. ....+ ..+..+|.+.++++.++..|.+.+.....|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 36666778888899999998888888877766532 11222 22344666778899999999987776444332
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISC 413 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (534)
..+....+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++... +.|...|.....+
T Consensus 334 ---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 334 ---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 122223344444433333221 111 111222444556666666666666666653 4455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 414 LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
|.+.|.+..|++=.+..++.. ++....|..=..++....++++|.+.|++.++.+
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666655555541 2223334434444555556666666666666653
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=5e-09 Score=99.63 Aligned_cols=245 Identities=16% Similarity=0.210 Sum_probs=137.6
Q ss_pred ccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
++.|+..+|.++|..|+..|+.+.|- +|..|.-.+.+.+...+..++......++.+.+. .|.+.+|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYTN 88 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------CCchhHHHH
Confidence 45566677777777777777777766 7777766666666666777776666666655544 456667777
Q ss_pred HHHHHHhcCCHHH---HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 047017 112 LISGFCKANQIEL---ANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATM 187 (534)
Q Consensus 112 l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 187 (534)
+..+|...||... ..+.++.+... +...|.-.....++..+.-. +.-||.. .++....
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~s---------------fs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv 150 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQS---------------FSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLV 150 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhh---------------hhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHH
Confidence 7777777776544 22211111111 11111111111111110000 0001110 1111112
Q ss_pred hcCCHhHHHHHHHHhc---------------ccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 188 LEGQTDKAMKLLDEMG---------------MCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
..|-++.+++++..+- ......+++-..+.+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2222333333322220 0011111111122222222 578888999999888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
.+|.+.|++.+.+.|-.++-+ .++...+..+++-|.+.|+.|+..|+...+..+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999988888877776644 78888888888889999998888887766655554
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.41 E-value=5e-10 Score=99.84 Aligned_cols=234 Identities=16% Similarity=0.010 Sum_probs=150.0
Q ss_pred CChhHHHHHHHHHHHCC-CCC--CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 047017 278 GKTEDAVDVLRAAKEKG-LTP--DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 278 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 354 (534)
+..+.++.-+.+++... ..| ....+..+...+...|+.+.|...|+++++.. +.+...|..+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 111 23456667777888888888888888888764 456778888888888888888888
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 434 (534)
..|++..+.. |.+..++..+..++...|++++|+..++...+. .|+..........+...+++++|...+.+.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888888764 556777778888888888888888888888775 3332211122223345677888888886655331
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-Cc
Q 047017 435 FRPTVISYNIIILGFCKTRRINESIEVLAAMFEK---GC---KPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA-IS 507 (534)
Q Consensus 435 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 507 (534)
.|+...+ .......|+...+ ..++.+.+. .+ +.....|..++..+...|++++|+..|+++++.+| ..
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2222221 2223345555444 344444421 11 11245788888888999999999999999998886 44
Q ss_pred hHHHHHHHhhcch
Q 047017 508 RDTFKRLNRTFPL 520 (534)
Q Consensus 508 ~~~~~~l~~~~~~ 520 (534)
.+....+......
T Consensus 271 ~e~~~~~~e~~~~ 283 (296)
T PRK11189 271 VEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.40 E-value=9.8e-09 Score=87.00 Aligned_cols=300 Identities=14% Similarity=0.130 Sum_probs=205.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
--..+...++..|++..|+..|..+++.+ |.+-.++..-...|...|+...|+.-+...++..|.-..+-..-...+.+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34567777888888888888888887754 44555566667788888888888888888887754444455555667788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChh----h------------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVV----T------------YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
+|.++.|..-|+.+++. .|+.. . ....+..+...|+...|+.....+++.. +-+...+..-
T Consensus 119 ~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred cccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 88999998888888876 33211 1 1223344566788888888888888764 6677777778
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 262 (534)
..+|...|++..|+.-++.. .+. ...+..++..+-..+...|+.+.++..+++.++. .|
T Consensus 196 akc~i~~~e~k~AI~Dlk~a------------------skL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dp 254 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQA------------------SKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DP 254 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHH------------------Hhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Cc
Confidence 88888888888887766654 222 2335666777778888888888888888888776 44
Q ss_pred ChhhHH----HH---------HHHHHhCCChhHHHHHHHHHHHCCCCCC---HhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 263 NVVTYS----IL---------ISSLCRDGKTEDAVDVLRAAKEKGLTPD---AYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 263 ~~~~~~----~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
|..... .+ +......++|.++++..+...+...... ...+..+-.++...+++.+|+..-.+++
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 433211 11 1123445677777777777666533211 1234445556666777888888777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 327 SDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 335 ~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 335 DID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 753 3446777777788887888888888888887764
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=3.6e-09 Score=101.77 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=75.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK-GIEPDEITYN----SLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
|.....|...+...-+.+.+..|.....++... ..+.+...|+ .+.+.++..|.++.|..-+...... .+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEd 1040 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDED 1040 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHH
Confidence 444455555555555555555555554443311 0011222222 3334445556666554433221110 0111
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEK-GCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
+-..- -+....++++++.+.|++++.- +-..+ ......++.+....+..+.|...+-+.....+.......-|+-++
T Consensus 1041 i~gt~-l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1041 IRGTD-LTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVY 1119 (1238)
T ss_pred Hhhhh-HHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 10000 1113467888888888888763 11222 234456666677777888888887777777766665555555444
Q ss_pred c
Q 047017 519 P 519 (534)
Q Consensus 519 ~ 519 (534)
.
T Consensus 1120 i 1120 (1238)
T KOG1127|consen 1120 I 1120 (1238)
T ss_pred H
Confidence 3
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.39 E-value=1.9e-10 Score=106.72 Aligned_cols=247 Identities=18% Similarity=0.160 Sum_probs=167.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKY-------GEPDV-FAYNALISGFCKANQIELANKVLDRLRSR----- 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 135 (534)
|.-..+...+...|...|+++.|..+++..... ..+.. ...+.+...|...+++.+|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445666888899999999999999887766 22222 33445788888999999999999988654
Q ss_pred CC-CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 136 GF-SP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----NC-KPTV-ITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 136 ~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
|- .| -..+++.|...|.+.|++++|...++++.+. +. .|.+ ..++.++..+...+++++|..++...
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a---- 351 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA---- 351 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH----
Confidence 21 22 2456777888899999999888888877642 11 2222 24566777788889999999888754
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C--CC-ChhhHHHHHHHHHhCCC
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----L--EP-NVVTYSILISSLCRDGK 279 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~~~ 279 (534)
.+++..........-..+++.|...|...|++++|.++++.++... . .+ ....++.+...|.+.++
T Consensus 352 -------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 352 -------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred -------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 4444422222211234678888889999999999999888876541 1 11 13356677777777788
Q ss_pred hhHHHHHHHHHHHC----C--CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 280 TEDAVDVLRAAKEK----G--LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 280 ~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
+.+|.++|.+.... | .+....+|..|+..|.+.|+++.|.++.+.+.
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87777777665432 2 12233467777777777787777777776665
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=6.6e-08 Score=88.18 Aligned_cols=435 Identities=12% Similarity=0.055 Sum_probs=249.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..-+.++++.++|++|+.+.+.-... ..+...+..-+.+..+.++.++|+..++-+. +.+..+...-...
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQv 119 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQV 119 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHhccc---ccchHHHHHHHHH
Confidence 4556777788899999999999665442211 1111122344566789999999999998332 5566678888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQT 192 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 192 (534)
+.+.|++++|.++|+.+.+.+.+. +...-..++.+-.. ..+. +.+. ....| +-..+......+...|++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~---v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQS---VPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHh---ccCCCcchHHHHHHHHHHHHhcccH
Confidence 999999999999999998774321 11111122211110 1111 1222 21122 122233344556788999
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC------CCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ------PDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV 265 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (534)
.+|+++++.. .++.++-...+-. ... ..-..+...+...|+.++|..++...++.. ++|..
T Consensus 192 ~qA~elL~kA-----------~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 192 NQAIELLEKA-----------LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHHHHH-----------HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCch
Confidence 9999998876 1111111111100 011 123345566788999999999999999885 33443
Q ss_pred h----HHHHHHHHHhCCChh-HHHHHHHHHHHCCCC---------CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 266 T----YSILISSLCRDGKTE-DAVDVLRAAKEKGLT---------PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL 331 (534)
Q Consensus 266 ~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (534)
. -|.++..-....-++ .++..++........ --...+...+......+..+.+.++-...... .
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~--~ 337 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM--S 337 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc--C
Confidence 2 233332211111112 122222221111000 00011111111222244455555544433322 2
Q ss_pred CCHHHHHHHHHHHH-hCCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCC
Q 047017 332 PDIVNYNTILAAFC-KNGNADQALEIFEKLSDVGCPPN-VSSYNTMFSALWSSGDKIRALGMIS--------EMLSKGIE 401 (534)
Q Consensus 332 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~ 401 (534)
|....-..+..+.. +...+..+.+++....+.. |.+ ..+...++......|+++.|..++. .+.+.+..
T Consensus 338 p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~ 416 (652)
T KOG2376|consen 338 PESLFPILLQEATKVREKKHKKAIELLLQFADGH-PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL 416 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC
Confidence 33322222333222 2225778888888877653 333 4556667778889999999999998 55554434
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET 475 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 475 (534)
| .+...+...+.+.++.+.|..++.+.++. ...+. ..++..++..-.+.|+-++|..+++++++.+ ++|..
T Consensus 417 P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~ 493 (652)
T KOG2376|consen 417 P--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTD 493 (652)
T ss_pred h--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHH
Confidence 4 44556667777888877788887776532 01111 2234444555567899999999999999965 46888
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+...++.+|.+. +++.|..+-+.+..
T Consensus 494 ~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 494 LLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 889999999887 68888887665543
No 85
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.38 E-value=2.3e-07 Score=83.85 Aligned_cols=425 Identities=10% Similarity=0.074 Sum_probs=235.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
|.|..+|..|++-+... .+++++..++.+....|..+.+|...++.-.+.++++....+|.+.+.. ..+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 55666666666654333 6666666666666666666666666666666666666666666665544 23455555544
Q ss_pred HHHHc-CCCHH----HHHHHHHHHHh-CCCCC-CHhhHHHHHHH---------HHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 149 GSLCS-RGMIE----SAFKVFDQLLR-DNCKP-TVITYTILIQA---------TMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 149 ~~~~~-~g~~~----~a~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
..-.+ .|+.. ...+.|+-.+. .|..+ +-..|+..+.. |....+++...++++++.....++.++
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 43222 12221 12222333222 22211 11223333322 233345556666666665555666666
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhh---------------HHHHHHHHH
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GLEPNVVT---------------YSILISSLC 275 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~~~ 275 (534)
-++-+...... .|..+-..++. -+...+..|.++++++... |...+..+ |..+|..-.
T Consensus 174 LW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 174 LWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 55555544432 22222222221 1233455555555554321 22111111 333332211
Q ss_pred hCC------Ch--hHHHHHHHHHHH-CCCCCCHhcHHHH-------HHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 047017 276 RDG------KT--EDAVDVLRAAKE-KGLTPDAYSYDPL-------ISAYCKDGR-------LDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 276 ~~~------~~--~~a~~~~~~~~~-~~~~~~~~~~~~l-------~~~~~~~~~-------~~~a~~~~~~~~~~~~~~ 332 (534)
..+ .. ....-.+++... .+..|+ +|..- .+.+...|+ .+++..++++....-...
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 00 111222222221 222222 22111 122333333 456666666665542222
Q ss_pred CHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 047017 333 DIVNYNTILAAFCK---NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP-DEITYN 408 (534)
Q Consensus 333 ~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 408 (534)
+..++..+...--. .+..+....+++++...-...-.-+|..++....+......|..+|.++.+.+..+ +..+.+
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 33333333322111 12356666777777655333344567888888888889999999999999887666 567778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGY 486 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 486 (534)
+++..++ .++...|.++|+--.+. ...++.--...+..+...++-..|..+|++.+..++.|+ ..+|..++.-=..
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 8887776 57889999999876654 233444445778888889999999999999998865554 5788899988889
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 047017 487 GGWRAEAMELANALVSMHA 505 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~~ 505 (534)
-|+...+.++-++.....+
T Consensus 485 vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cccHHHHHHHHHHHHHhcc
Confidence 9999999999998888766
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=8.1e-09 Score=85.76 Aligned_cols=427 Identities=14% Similarity=0.068 Sum_probs=219.6
Q ss_pred ccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 32 SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+...++..|.+.+..+++..++..|++++..-.+++ +.+......++.+|....++..|-..++.+....|.-..--..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 344566667777777777778888887777766654 4466666777777777777777777777777665443333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVV--TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
-...+.+.+.+..|+.+...|... ++.. +...-.......+++..+..+.++....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 455566777777777777776532 1111 11111222345666777777766654322 334444445555566
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh--
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVT-- 266 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-- 266 (534)
|+++.|.+-|+.. .+ .|.. ....|+. .-+..+.|+++.|++...+++++|++-.+..
T Consensus 158 gqyEaAvqkFqaA------------------lqvsGyq-pllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 158 GQYEAAVQKFQAA------------------LQVSGYQ-PLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred ccHHHHHHHHHHH------------------HhhcCCC-chhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 6666666666654 33 3333 3345554 3455677888888888888888765422110
Q ss_pred --HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 047017 267 --YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG-CLPDIVNYNTILAA 343 (534)
Q Consensus 267 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~ 343 (534)
-+..+.. ...|+. ..+. ..+ -...++.-...+.+.++++.|.+.+..|.... ...|+.+...+.-.
T Consensus 218 Gm~tegiDv-rsvgNt---~~lh----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGIDV-RSVGNT---LVLH----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCch-hcccch---HHHH----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 0000000 000000 0000 000 11234444455666777777776666654321 12345555444332
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDE 422 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 422 (534)
- ..+++.+..+-++-+...+ |....||..++-.|++..-++.|-.++.+-..... -.+...|+.+=..-...-..++
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEe 364 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEE 364 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHH
Confidence 2 1233444444444444443 45566777777777777666666666654322211 1233333332222222345555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047017 423 AVGLLVDMESTRFRPTVISYNIIILGF--CKTRR---INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 423 A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
|.+-++.+... -....-...+..- ...++ ...|++-+++.++.- ..+...-.+.+++..++..+++.|
T Consensus 365 a~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~F 437 (459)
T KOG4340|consen 365 AFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIF 437 (459)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHH
Confidence 55555443221 0000000111111 11111 122333333333321 123445566788888999999999
Q ss_pred HHHHHcCC
Q 047017 498 NALVSMHA 505 (534)
Q Consensus 498 ~~~~~~~~ 505 (534)
....+.-.
T Consensus 438 r~SvefC~ 445 (459)
T KOG4340|consen 438 RKSVEFCN 445 (459)
T ss_pred HHHHhhhc
Confidence 88877533
No 87
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=2.9e-09 Score=101.15 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=177.0
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
++-.+...|+.|+..+|..++..|+..|+.+.|- +|..|...+ |.+...|+.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667789999999999999999999999998 999998888 888889999999988888877765
Q ss_pred CCChhhHHHHHHHHHcCCCHHH---HHHHHHHHHh----CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCCh
Q 047017 138 SPDVVTYNIMIGSLCSRGMIES---AFKVFDQLLR----DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMV 210 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 210 (534)
.|...+|..|..+|...||... +.+.+..+.. .|+-....-+ ++...+.-+-...+....... ...|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~f--l~k~~c~p~~lpda~n~illl--v~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWF--LMKIHCCPHSLPDAENAILLL--VLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHH--HhhcccCcccchhHHHHHHHH--HHHHHH
Confidence 5788999999999999999654 3332222222 2221111111 122122223333333322211 234556
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 047017 211 GQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (534)
+.+++++..+...... . .+..+++-+... +....++........-.|++.++..++..-...|+.+.|..++..|
T Consensus 156 aqllkll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6666665443221111 0 111123322221 2223333333333222589999999999999999999999999999
Q ss_pred HHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 291 KEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
.+.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 999999888877777654 88888899999999999999998887766555544
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=1.4e-09 Score=97.02 Aligned_cols=217 Identities=14% Similarity=0.044 Sum_probs=141.7
Q ss_pred CChhHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047017 51 GKFDESLYFIESMVANG---CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANK 127 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 127 (534)
+..+.++.-+.+++... .......|..++..+...|+.++|...|+...+.+|.++.+|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35667777777777532 112245688888889999999999999999999888899999999999999999999999
Q ss_pred HHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc
Q 047017 128 VLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK 206 (534)
Q Consensus 128 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 206 (534)
.|++..+. .| +..+|..+..++...|++++|.+.|+...+.+ |.+. ........+...++.++|...+.+.
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~---- 191 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQR---- 191 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHHH----
Confidence 99999876 44 46778888888888999999999999988764 3333 1122222233456677777666543
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC---CCChhhHHHHHHHHHhCCCh
Q 047017 207 KGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR---GL---EPNVVTYSILISSLCRDGKT 280 (534)
Q Consensus 207 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~ 280 (534)
... ..++...+ . ......|+...+ +.+..+.+. .+ +.....|..+...+...|++
T Consensus 192 --------------~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 192 --------------YEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred --------------Hhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 211 12222111 1 222334444333 233333321 00 01234566667777777777
Q ss_pred hHHHHHHHHHHHCC
Q 047017 281 EDAVDVLRAAKEKG 294 (534)
Q Consensus 281 ~~a~~~~~~~~~~~ 294 (534)
++|...|+++.+.+
T Consensus 253 ~~A~~~~~~Al~~~ 266 (296)
T PRK11189 253 DEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 89
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.34 E-value=2.8e-08 Score=95.88 Aligned_cols=471 Identities=13% Similarity=0.009 Sum_probs=287.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLD 130 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 130 (534)
.+...|+..|-+..+.. +.-...|..++..|....+...|.+.|..+-+.++.+..+...+...|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45778888887777765 44467788899999888889999999999999999999999999999999999999998844
Q ss_pred HHHhCC-CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh-------
Q 047017 131 RLRSRG-FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM------- 202 (534)
Q Consensus 131 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------- 202 (534)
...+.. ...-...|....-.|...++...|..-|+...+.. |.|...|..++.+|...|.+..|.++|.++
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 433321 00112334455566778888999999999988876 778889999999999999999999999776
Q ss_pred ---------cccccCChHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHCCC
Q 047017 203 ---------GMCKKGMVGQAFQFVRSLESRG------CQPDVISYNMLLRTLLNMGKWEEGEKLMTEM-------ISRGL 260 (534)
Q Consensus 203 ---------~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~ 260 (534)
..+..|.+.++...+..+.... ...-..++..+...+...|-...+.+.++.. .....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4566677777777776554321 0111222322333333333333333333322 22211
Q ss_pred CCChhhHHHHHHHH-----------------------HhCCCh---h---HHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 261 EPNVVTYSILISSL-----------------------CRDGKT---E---DAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 261 ~~~~~~~~~l~~~~-----------------------~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
..+...|-.+..+| ...+.. + -+.+.+-.-.+ ...+...|..++..|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHH
Confidence 11222222111111 111111 1 01111111111 11123344455444433
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 047017 312 --------DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG 383 (534)
Q Consensus 312 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (534)
..+...|+..+.+.++.. ..+..+|+.+... ...|++.-|...|-+..... |.+..+|..+...+....
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 122345677777776653 3466777776655 55677777777777766653 667788888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCChHHHH
Q 047017 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME----STRFRPTVISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 459 (534)
+++-|...|...+... +.+...|-.........|+.-++..+|..-. ..|--+...-|..........|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 9999999998887752 2244455444445556777777777776521 1233444444444444455666665544
Q ss_pred HHHHHH----------HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCchHHHHHHHhhcchHHH
Q 047017 460 EVLAAM----------FEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH------AISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 460 ~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 523 (534)
...+++ .. +.+.+...|...+...-+.+.+.+|..+..+++..- ...+-+-..+++.+...|.
T Consensus 944 ~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslge 1022 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGE 1022 (1238)
T ss_pred HHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcc
Confidence 433332 22 334456677777777777788888777777765421 1122245567788888888
Q ss_pred HHHhhhh
Q 047017 524 YKEISHL 530 (534)
Q Consensus 524 ~~~~~~~ 530 (534)
++.|..-
T Consensus 1023 fe~A~~a 1029 (1238)
T KOG1127|consen 1023 FESAKKA 1029 (1238)
T ss_pred hhhHhhh
Confidence 8776654
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.3e-07 Score=86.92 Aligned_cols=290 Identities=16% Similarity=0.111 Sum_probs=181.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVAN--------G-CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV 106 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 106 (534)
+..+|..+.+++++..+++-|.-.+..|... . ..++ +.-..+.......|.+++|+.+|++...
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 5667888999998888888776655544321 0 0121 2222333444677899999999988875
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH----------hCC-----
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL----------RDN----- 171 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~----- 171 (534)
|..+-..|...|.+++|.++-+.--+. . =..||......+...+|.+.|++.|++.. ...
T Consensus 829 --~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 829 --YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred --HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 455556777889999998876653222 1 23466666777777888888888887632 211
Q ss_pred ----CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh--------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 172 ----CKPTVITYTILIQATMLEGQTDKAMKLLDEM--------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 172 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
-..+...|.......-..|+.+.|+.+|..+ ..+-+|+.++|-++-++ . .|......+.+.|
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMY 977 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHh
Confidence 1223445555566666789999999998887 66778999999888654 2 3667777889999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------------hCC--ChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC-------------RDG--KTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
-..|++.+|...|.+... +...|+.|- ..| +.-.|-.+|++. |. -+..
T Consensus 978 En~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~ 1040 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHK 1040 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhH
Confidence 999999999999877643 222333221 111 222233333321 11 1223
Q ss_pred HHHHHHhcCCHHHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 305 LISAYCKDGRLDLAIEFLDY--------MIS--DGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
.+..|-+.|.+.+|+++--+ ++. .....|+...+.-...++...++++|..++-..
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34456677777666654311 111 123356777777777777777777777666544
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=9.2e-09 Score=85.45 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=178.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCT-KLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
+......+..+|....+|..|...++++-+. .|...-|. .-.+.+.+.+.+.+|+++...+.........+...-..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaA 120 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAA 120 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566777888899999999999999999875 34444433 34567788999999999998887642222223333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
.....+++..+..++++....| +..+.+.......+.|+++.|.+-|+...+.+--.....|+. .-++.+.|+++.
T Consensus 121 IkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyas 196 (459)
T KOG4340|consen 121 IKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYAS 196 (459)
T ss_pred HhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHH
Confidence 4446788889999988887532 566666677777899999999999999998753334445554 445668899999
Q ss_pred HHHHHHHhccc--------ccCChHHHHHHHHHHHHcCCC------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 047017 195 AMKLLDEMGMC--------KKGMVGQAFQFVRSLESRGCQ------PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG- 259 (534)
Q Consensus 195 a~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 259 (534)
|++...++... .-|..-+... +...|.+ .-...+|.-...+.+.|+++.|.+.+-.|..+.
T Consensus 197 ALk~iSEIieRG~r~HPElgIGm~tegiD----vrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 197 ALKHISEIIERGIRQHPELGIGMTTEGID----VRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred HHHHHHHHHHhhhhcCCccCccceeccCc----hhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 99988877110 0000000000 0000000 001224444455678888888888887775432
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDY 324 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (534)
...|+.|...+.-.- ..+++.+..+-+..+...+. ....+|..++-.|++..-++.|-+++.+
T Consensus 273 ~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 273 EELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 234666666554332 23456566666666666543 3556788888888888888888777654
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.29 E-value=5.1e-08 Score=90.68 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.|..+...+...|+.+.+.+.+....+.. +.+. +........+...|++++|...++.+....|.+..++.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 45555566667788888777777765543 2222 223333445677888999999998888877777766553 222
Q ss_pred HH----hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 047017 116 FC----KANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG 190 (534)
Q Consensus 116 ~~----~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (534)
+. ..+....+.+.+.... ...|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 22 2344555555554411 11233 3344456677888888888988888888875 566677788888888888
Q ss_pred CHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 191 QTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC-QPDV--ISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
++++|...+++. ..... .++. ..|..+...+...|++++|..++++....
T Consensus 163 ~~~eA~~~l~~~------------------l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESW------------------RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhh------------------hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888887765 22211 1222 23456777788888888888888887543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.29 E-value=1.3e-07 Score=80.39 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRA 388 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 388 (534)
+...|+...|+..+..+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+...+-.+...+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334455555555555555542 3455555555555555555555555555544442 34444444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhc
Q 047017 389 LGMISEMLSKGIEPDEIT----YNSL---------ISCLCRDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKT 452 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 452 (534)
+..+++.++. .||... |..+ +......++|.++.+..+...+....... ..+..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 5555555542 333221 1000 11233456666666666666654332112 2233444555666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 453 RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 453 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
|++.+|+....+.++.. +.|..++..-..+|.-...+++|+.-|+++.+.++.+..+...+
T Consensus 321 ~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred CCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 77777777777776643 22466666667777777777777777777777777766554433
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=4e-10 Score=102.04 Aligned_cols=219 Identities=12% Similarity=0.130 Sum_probs=175.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 305 LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
...-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+.. |.|...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 3445678899999999999998885 5577899999999999999999999999999886 7888999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhc
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLI-----------SCLCRDGMVDEAVGLLVDM-ESTRFRPTVISYNIIILGFCKT 452 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 452 (534)
-..|+..++..+... |... .+. ..+.....+....++|-++ ...+..+|+.+...|.-.|--.
T Consensus 369 q~~Al~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 999999998887542 1100 000 0111112233444455444 3444457888888898899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 453 RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 453 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
|++++|++.|+.++...+ .|..+|+.|+-.+....+.++|+..|++++++.|.-..+.+.|+..+..+|-|+||+..+
T Consensus 444 ~efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred hHHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999998753 378899999999999999999999999999999999999999999999999999998875
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.5e-07 Score=85.77 Aligned_cols=447 Identities=15% Similarity=0.182 Sum_probs=215.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHH----------HHHHHHHHHcCC--------
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKA----------VRVMEILEKYGE-------- 103 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~~~~~-------- 103 (534)
.++...-+.++..--+.+++..++.| ..+..+++.+.+.|+..++-.+- ..+=....+++|
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 34445556777777888888888887 77999999999988876643221 111122222221
Q ss_pred ------------CChhhHHHHHHHHHhcCCHHHHHH-----------HHHHHHhCCCC--CChhhHHHHHHHHHcCCCHH
Q 047017 104 ------------PDVFAYNALISGFCKANQIELANK-----------VLDRLRSRGFS--PDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 104 ------------~~~~~~~~l~~~~~~~g~~~~a~~-----------~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 158 (534)
.....|....+.+.+..+.+--.+ ++++..+.+++ .|+......+.++...+-..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 112235555666666666544333 33444444332 35566667778888888888
Q ss_pred HHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHh----------cccccCChHHHHHHHHHHHHcC--
Q 047017 159 SAFKVFDQLLRDNCKP--TVITYTILIQATMLEGQTDKAMKLLDEM----------GMCKKGMVGQAFQFVRSLESRG-- 224 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~----------~~~~~~~~~~a~~~~~~~~~~~-- 224 (534)
+-+++++++.-.+... +...-+.|+-. .-.-+.....++.+++ .....+-+++|+.+|++....+
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence 9999998887543221 11122222222 2223334444444444 2223344455555554321100
Q ss_pred -------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 047017 225 -------------------CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 225 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
.-..+..|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.|++-.+
T Consensus 1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 0012233444444444444444444433221 133444444444444444444444
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.+..+.+....|. .-..++-+|.+.++..+-.+++ ..|+......+..-|...+.++.|.-+|...
T Consensus 1155 yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 4444443322222 2233444444444444333222 1234444444444444444444444444322
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
..|..+...+...|++..|...-+++ .+..+|..+..+|...+.+.-| +|...++.....-...+
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 22444444555555555444433321 2344555555555544443322 22233333334445566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHH
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 525 (534)
+..|...|-+++-+.+++..+... +-....|..|.-.|.+- ++++-.+.++-....-..+ .+.++..+.--|.
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNip-----KviRA~eqahlW~ 1358 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIP-----KVIRAAEQAHLWS 1358 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHH
Confidence 666667777777766666665422 12445556555555544 4555555555544332211 2334444555566
Q ss_pred Hhhhhhc
Q 047017 526 EISHLAT 532 (534)
Q Consensus 526 ~~~~~~~ 532 (534)
|..-++.
T Consensus 1359 ElvfLY~ 1365 (1666)
T KOG0985|consen 1359 ELVFLYD 1365 (1666)
T ss_pred HHHHHHH
Confidence 6655543
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=1.1e-07 Score=90.05 Aligned_cols=251 Identities=16% Similarity=0.179 Sum_probs=162.6
Q ss_pred ChhhHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---------CC
Q 047017 36 KETQFMKLIK--RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---------EP 104 (534)
Q Consensus 36 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~ 104 (534)
++.+-..++. .|+..|+.+.|.+-.+.+. +...|..+.+.+.+.++++-|.-.+-.|.... ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4444444443 3556899999998887765 45689999999999888887765554433211 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQ 184 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (534)
+...=...+......|.+++|..+|.+-.+. ..|-..|-..|.+++|.++-+.-.+..+ ..||...+.
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 1133334445566789999999999998754 3455677889999999998876444332 246667777
Q ss_pred HHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 185 ATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR--------GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 185 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.+-..+|.+.|++.|++..- .|+++++.+.+. ....|...|......+-..|+.+.|+.+|....
T Consensus 867 ~Lear~Di~~AleyyEK~~~-------hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGV-------HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCC-------hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 77788999999999998721 223333222221 012345566666777777899999988887664
Q ss_pred HCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 257 SRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
. |..+++..+-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.++.
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3 445555666667777766655432 244555666667777777777776665543
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=6.7e-08 Score=89.88 Aligned_cols=299 Identities=9% Similarity=-0.039 Sum_probs=168.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGL-EPNV-VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
...+..+...+...|+.+.+...+........ .++. .........+...|++++|...++++.+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34455566666666777776666666554321 1121 112222344567788888888888877753 223333331 1
Q ss_pred HHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 047017 307 SAYC----KDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS 382 (534)
Q Consensus 307 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (534)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|...+++..+.. |.+...+..+..++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 1222 23444555555444111 122233445556677788888888888888888775 66667777788888888
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCh
Q 047017 383 GDKIRALGMISEMLSKGI-EPDE--ITYNSLISCLCRDGMVDEAVGLLVDMESTRF-RPTVISY-N--IIILGFCKTRRI 455 (534)
Q Consensus 383 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 455 (534)
|++++|...+++...... .|+. ..+..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776421 1222 2344677778888888888888888754322 1111111 1 223333444443
Q ss_pred HHHHHHHHHHHH---cCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---------chHHHHHHHhhcchH
Q 047017 456 NESIEVLAAMFE---KGCK--PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI---------SRDTFKRLNRTFPLL 521 (534)
Q Consensus 456 ~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~ 521 (534)
..+... +.+.. .... .........+.++...|+.++|...++.+...... ........+.++...
T Consensus 242 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 242 DVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred ChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 333222 11111 1101 11122225666777888888888888877663322 123344456666778
Q ss_pred HHHHHhhhhhc
Q 047017 522 DVYKEISHLAT 532 (534)
Q Consensus 522 ~~~~~~~~~~~ 532 (534)
|++++|.+++.
T Consensus 321 g~~~~A~~~L~ 331 (355)
T cd05804 321 GNYATALELLG 331 (355)
T ss_pred CCHHHHHHHHH
Confidence 88888877654
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=7.7e-10 Score=96.93 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=164.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888776555 222222223444556677888888876543 3333332 455555555554444334555
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCL-PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
.+..-++........ .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555444433322 23333333445566778899888877543 36677777888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 396 LSKGIEPDEITYNSLISCLC----RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+. ..|. +...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.++++++++.+..
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 874 3343 3333444433 234688999999998765 5678888899999999999999999999998876543
Q ss_pred CCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCch
Q 047017 472 PNETTYVLLIEGIGYGGWR-AEAMELANALVSMHAISR 508 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 508 (534)
++.++..++.+....|+. +.+.+++.++.+.+|..+
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 677888888888888887 678889999888888777
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1e-06 Score=85.60 Aligned_cols=365 Identities=15% Similarity=0.157 Sum_probs=239.3
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI 146 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 146 (534)
.|++.....++++...+-+.+-+++++++.-.+ ..+...-+.++-...+. +..+..++.+++-.-+. | .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-P------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-h------h
Confidence 355666666777777777777778887776544 22333344444443333 34455555555543311 1 1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCC---------------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDN---------------------CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
+...+...+-+++|..+|++....+ --..+..|..++.+-.+.|...+|++.|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 2223333444455555544421100 0112345666666666666666666555443
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVD 285 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (534)
.|+..|..++....+.|.|++-.+.+....+..-.|.. =+.++-+|++.++..+..+
T Consensus 1131 ---------------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1131 ---------------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred ---------------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHH
Confidence 47788999999999999999999999888777545443 4678889999999888766
Q ss_pred HHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 286 VLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
++ .-|+......+.+-|...+.++.|.-+|.. ..-|..+...+...|++..|...-+++
T Consensus 1188 fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1188 FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 65 246888888999999999999998877754 344778888889999999888655443
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
.+..+|..+-.+|...+.+.-| +|-..++-....-...++..|...|.+++...+++...... +.....|+.|
T Consensus 1247 -ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTEL 1319 (1666)
T ss_pred -cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHH
Confidence 3678899999999877665443 23233334455667889999999999999999998776431 2245567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.-.|.+- ++++..+.++-.-.+ .-...+++++-...-|.+..-+|.+-.+.
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsR------vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSR------VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7666553 455555555544332 11236788888888888888887766554
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=8.7e-09 Score=93.60 Aligned_cols=223 Identities=18% Similarity=0.119 Sum_probs=133.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
..-.+++.|+..+|.-.|+.+++.+ |.+.++|..|+......++-..|+..++++.+.+|.+..+...|+..|...|.-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhH
Confidence 4455778888999999999888876 778889999999999999888999999999999899999999999999999888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHH---------HHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCH
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMI---------GSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..|.++|+.-+... |. ..|.... ........+....++|-++... +..+|+.+...|.-.|.-.|++
T Consensus 370 ~~Al~~L~~Wi~~~--p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK--PK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHhC--cc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888888876542 11 0000000 0011111122333333333322 2124445555555555555555
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILI 271 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 271 (534)
++|++.|+.+ .... |-|...||.|...+....+.++|+..|.+.++. .|+ +.+...|.
T Consensus 447 draiDcf~~A------------------L~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 447 DRAVDCFEAA------------------LQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred HHHHHHHHHH------------------HhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 5555555543 2111 223445555555555555555555555555554 232 23334444
Q ss_pred HHHHhCCChhHHHHHHHHH
Q 047017 272 SSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~ 290 (534)
-.|...|.+++|.+.|-.+
T Consensus 506 IS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 4455555555555555443
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.16 E-value=2.7e-07 Score=86.46 Aligned_cols=107 Identities=14% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH
Q 047017 238 TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (534)
+.....+|.+|+.+++.+.... .-...|..+...|...|+++.|.++|-+. ..+...+..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3444555555555555555442 22334555556666666666666665332 124445556666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
|.++-.+... .......|..-..-+-..|++.+|.++|
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 6655544322 1122233333333344444444444443
No 102
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.3e-10 Score=72.00 Aligned_cols=49 Identities=43% Similarity=0.769 Sum_probs=34.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5667777777777777777777777777777777777777777776654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=7.4e-07 Score=94.01 Aligned_cols=272 Identities=14% Similarity=0.047 Sum_probs=179.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC---C--CHhcHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLT---P--DAYSYDPL 305 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 305 (534)
+...+...|++++|...++.........+. ...+.+...+...|++++|...+.+....... + .......+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 345567899999999999988764212121 23455666778899999999999887753111 1 12244556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCC--CHhhHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD----GCL--P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CPP--NVSSYNT 374 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~ 374 (534)
...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 67788899999999998877652 211 1 12334455666778899999999998875531 111 2334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKG--IEPDEI--T-Y-NSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNII 445 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 445 (534)
+...+...|+++.|...+.++.... ...... . . ...+..+...|+.+.|...+........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888999999999988875421 111111 1 0 1122444568899999999877654211111 1113456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 446 ILGFCKTRRINESIEVLAAMFEK----GCKPN-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..++...|++++|...++++... |..++ ..+...+..++...|+.++|...+.++++....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 77888999999999999988763 32221 245667778889999999999999999987643
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=4.7e-07 Score=84.89 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=147.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
.+...|+++.|+..|-++. .....+.+.....++.+|+.+++.+..+. .....|..+..-|+..|+++.|
T Consensus 715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHH
Confidence 3445667777776664432 12234445556667777777777666542 2334466677777777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
.++|-+.- .++-.|..|.+.|+|..|.++-++.. |.......|..-..-.-+.|++.+|.++|-.+
T Consensus 785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti--- 850 (1636)
T KOG3616|consen 785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI--- 850 (1636)
T ss_pred HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence 77765432 23455667777777777777766553 22334444555555555666666666654333
Q ss_pred ccCChHHHHHHHHHH----------HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 206 KKGMVGQAFQFVRSL----------ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
|..+.|++.+++. .+.....-..|...+..-+-..|+...|...|-+.. -|...++.|.
T Consensus 851 --~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk 919 (1636)
T KOG3616|consen 851 --GEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYK 919 (1636)
T ss_pred --cCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhh
Confidence 3333333333221 111111112344555566667777777777664432 2344455565
Q ss_pred hCCChhHHHHHHHHH--------------HHCCCCCC------HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 047017 276 RDGKTEDAVDVLRAA--------------KEKGLTPD------AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV 335 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~--------------~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (534)
.++-|++|.++-+.- ...|-..- ......-+...+..+.++-|+++-+...+.. ...
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~ 996 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGE 996 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---Ccc
Confidence 666666655443210 00000000 0011112223334455555555554444432 122
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCC
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVG 364 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 364 (534)
+...+...+...|++++|-+.|-+.++.+
T Consensus 997 vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 997 VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33445555667888888888887776653
No 105
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=3.3e-10 Score=70.13 Aligned_cols=49 Identities=37% Similarity=0.836 Sum_probs=24.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 437 PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 437 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444555555555555555555555555555555555555555544443
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.10 E-value=1.7e-06 Score=91.35 Aligned_cols=338 Identities=12% Similarity=0.052 Sum_probs=206.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC------CCC--HhhHHHHHHH
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC------KPT--VITYTILIQA 185 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 185 (534)
......|++..+...++.+.......+..........+...|+++++...+..+...-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34445577776666665542211111222333445556678899999888887754310 111 1122223344
Q ss_pred HHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 047017 186 TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD----VISYNMLLRTLLNMGKWEEGEKLMTEMISRGL- 260 (534)
Q Consensus 186 ~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 260 (534)
+...|++++|...++.. .......+ ....+.+...+...|++++|...+.+......
T Consensus 462 ~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 462 AINDGDPEEAERLAELA------------------LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred HHhCCCHHHHHHHHHHH------------------HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 55667777777766654 22111111 12345566777889999999999988765311
Q ss_pred --CC--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC--C-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 261 --EP--NVVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT--P-DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG 329 (534)
Q Consensus 261 --~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (534)
.+ ...++..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.....
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 11 1234556677788999999999998887652 211 1 12234455666777899999999998876531
Q ss_pred --CCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHhh--H--HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 330 --CLP--DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CPPNVSS--Y--NTMFSALWSSGDKIRALGMISEMLSKG 399 (534)
Q Consensus 330 --~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 399 (534)
..+ ....+..+...+...|+++.|...++.+.... ....... . ...+..+...|+.+.|...+.......
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 111 23344556677888999999999998875431 1111111 0 112244456789999999887755421
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 400 IEPDE---ITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 400 ~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..... ..+..+..++...|++++|...+++.... +..+. ..+...+..++...|+.++|...+.++++..
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 11111 11345677788999999999999887643 22222 3456677788899999999999999998853
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.2e-08 Score=89.44 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHhcHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC----RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI 306 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (534)
.....+.++.+.++++.|.+.++.|.+.+ +..+...++.++. ..+.+.+|..+|+++.+. ..+++.+.+.++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 33344444555555555555555554331 1122222222221 122344455555554332 233444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhh
Q 047017 307 SAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-DQALEIFEKLSD 362 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 362 (534)
.++...|++++|.+++.+....+ +.++.++..++.+....|+. +.+.+.+.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 44444555555555444444332 22333444444444444443 333344444433
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.06 E-value=1.1e-05 Score=73.27 Aligned_cols=393 Identities=12% Similarity=0.096 Sum_probs=219.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...|..||+.+-.+ ..++++..++++... .+..+..|..-+....+..+++....+|.+.+.. ..+...|...+.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~ 94 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLS 94 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHH
Confidence 4777899999987777 999999999999875 3667889999999999999999999999998865 556778887776
Q ss_pred HHHhc-CCHH----HHHHHHHHHH-hCCCCCC-hhhHHHHHHHH---------HcCCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 115 GFCKA-NQIE----LANKVLDRLR-SRGFSPD-VVTYNIMIGSL---------CSRGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 115 ~~~~~-g~~~----~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
.-.+. |+.. ...+.|+-.. +.|+.+- -..|+..+..+ ..+.+++...++|++++...+..-...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 55443 2222 2334444433 3354432 33455555433 334456778888888875422111112
Q ss_pred HHHH------HHHH-------HhcCCHhHHHHHHHHh------------cccccCChHHHHHH--HHHH---HHcC-CC-
Q 047017 179 YTIL------IQAT-------MLEGQTDKAMKLLDEM------------GMCKKGMVGQAFQF--VRSL---ESRG-CQ- 226 (534)
Q Consensus 179 ~~~l------~~~~-------~~~g~~~~a~~~~~~~------------~~~~~~~~~~a~~~--~~~~---~~~~-~~- 226 (534)
|+.. ++.. -+..++..|.++++++ .....|-.++..++ .... ...+ ..
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2211 1111 1233556666666665 22223333332221 1111 1111 00
Q ss_pred CC--------HhhHHHHHH---------------------HHHhcCC-------HHHHHHHHHHHHHCCCCCChhhHHHH
Q 047017 227 PD--------VISYNMLLR---------------------TLLNMGK-------WEEGEKLMTEMISRGLEPNVVTYSIL 270 (534)
Q Consensus 227 ~~--------~~~~~~l~~---------------------~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 270 (534)
.+ ..+|...+. .+...|+ .+++..+++..+..-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111111 1112222 23344444443332112222223322
Q ss_pred HHHHHhCC---ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 047017 271 ISSLCRDG---KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP-DIVNYNTILAAFCK 346 (534)
Q Consensus 271 ~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 346 (534)
...--..- ..+.....++++.......-.-+|...++...+..-+..|..+|.++.+.+..+ +.....+++..|+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 22111111 244444555555443222122356666666677777777777777777765555 4555666666554
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD--EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 424 (534)
.++.+-|.++|+--.+. .+.++......+..+...++-..+..+|++....++.++ ..+|..++..-..-|+...+.
T Consensus 414 skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 56677777777765554 244555556667777777777777777777776644444 356777777777777777777
Q ss_pred HHHHHHHh
Q 047017 425 GLLVDMES 432 (534)
Q Consensus 425 ~~~~~~~~ 432 (534)
++-+++..
T Consensus 493 ~lekR~~~ 500 (656)
T KOG1914|consen 493 KLEKRRFT 500 (656)
T ss_pred HHHHHHHH
Confidence 77666543
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.05 E-value=5e-08 Score=84.60 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=133.2
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF--- 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 107 (534)
......+..+...+...|++++|...|+++.... +.+ ..++..++.++...|++++|...++.+.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4566678889999999999999999999998864 322 257788999999999999999999999988765554
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCh-hhH-----------------HHHHHHHHcCCCHHHHH
Q 047017 108 AYNALISGFCKA--------NQIELANKVLDRLRSRGFSPDV-VTY-----------------NIMIGSLCSRGMIESAF 161 (534)
Q Consensus 108 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~g~~~~a~ 161 (534)
++..+..++... |+++.|.+.++.+... .|+. ..+ ..+...+.+.|++.+|.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 566677777665 7899999999999877 4442 221 13456788899999999
Q ss_pred HHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 162 KVFDQLLRDNC--KPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 162 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..++.+.+... +.....+..++.++...|++++|..+++.+
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987631 234578889999999999999999988876
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.05 E-value=7e-08 Score=79.28 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=133.6
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
|.|..+ ......+...|+-+....+........+.+......++....+.|++..|...+.+..... ++|...|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 445555 6777788888988888888888777778888888888999999999999999999988764 66889999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD 228 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 228 (534)
-+|.+.|+++.|..-|.+..+.. +-++...+.+.-.+.-.|+++.|..++... ... ..-+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a------------------~l~-~~ad 201 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPA------------------YLS-PAAD 201 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHH------------------HhC-CCCc
Confidence 99999999999999999988764 556677888888888889999888888775 222 2336
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
...-..+.......|++++|.++...-.
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6777778888888999999988775543
No 111
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=2.4e-07 Score=82.48 Aligned_cols=122 Identities=13% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH--
Q 047017 274 LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-- 350 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 350 (534)
+...+..++|+.+..++++.+. -+..++.....++...| ++++++..++++...+ +.+..+|......+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 3344455555555555554321 12233333333333344 3445555555554442 22333444333333333331
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
++++.+++++.+.. +.+..+|.....++...|+++++++.++++++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444443 344444544444444445555555555555443
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=2e-06 Score=80.93 Aligned_cols=222 Identities=14% Similarity=0.172 Sum_probs=167.3
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047017 172 CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKL 251 (534)
Q Consensus 172 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 251 (534)
.+|-...-..+...+...|-...|..+++++ ..|..++.+|...|+..+|..+
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------------------------emw~~vi~CY~~lg~~~kaeei 446 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------------------------EMWDPVILCYLLLGQHGKAEEI 446 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------------------HHHHHHHHHHHHhcccchHHHH
Confidence 4555555566777777888888888877754 3566778888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047017 252 MTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL 331 (534)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (534)
..+-.+. +|++..|..++.......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +
T Consensus 447 ~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-p 516 (777)
T KOG1128|consen 447 NRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-P 516 (777)
T ss_pred HHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-c
Confidence 8887774 678888888877776666678888877664332 22233333444788888888888877764 5
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
....+|.....+..+.+++..|.+.|....... |.+...|+.+..+|.+.++..+|...+.+..+.+ ..+...|...+
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENym 594 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYM 594 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechh
Confidence 567788888888888889999998888888764 7777889999999999999999999998888876 44555666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 047017 412 SCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~ 432 (534)
....+.|.+++|.+.+.++.+
T Consensus 595 lvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 595 LVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhhhhcccHHHHHHHHHHHHH
Confidence 777888899999888888754
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.03 E-value=2.7e-05 Score=75.24 Aligned_cols=438 Identities=14% Similarity=0.123 Sum_probs=241.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
..+..+++..|++...++.+.. |....+...-+-.+.+.|+.++|..+++......+.|..+...+-.+|...|+.++|
T Consensus 18 d~ld~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 3567789999999999988863 222222222233457899999999999988887778999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHhHHHH-HHHHhc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG-QTDKAMK-LLDEMG 203 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~-~~~~~~ 203 (534)
..+|++..+. .|+......+..+|.+.+++.+-.++--++.+. .+.+...|..++..+...- ..+.+.. ++
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~---- 169 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL---- 169 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh----
Confidence 9999999987 778888888889999998886655555444443 4666677777776655432 1122111 11
Q ss_pred ccccCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCChhhHHHHHHHHHhCCChh
Q 047017 204 MCKKGMVGQAFQFVRSLESRG-CQPDVISYNMLLRTLLNMGKWEEGEKLMTE-MISRGLEPNVVTYSILISSLCRDGKTE 281 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (534)
..-|.+.++.+.+.+ .-.+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...++|.
T Consensus 170 ------l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 170 ------LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred ------HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 112223333333332 111111222223334556677777777733 222222223333344455566667777
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHH----------------HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISA----------------YCKDGRLDLAIEFLDYMISDGCLPDIV-NYNTILAAF 344 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 344 (534)
+..++-.++...+.. | |...... +...+..+...+...+..... ..++. +.-.+...+
T Consensus 244 ~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~ 318 (932)
T KOG2053|consen 244 ELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRY 318 (932)
T ss_pred HHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHh
Confidence 777777776666432 1 2211111 111122333333333332221 01111 111111112
Q ss_pred HhCCCHHHHHHHHH------------------------------HHhhCCCCCCHh----h---HHHHHHHHHhcC----
Q 047017 345 CKNGNADQALEIFE------------------------------KLSDVGCPPNVS----S---YNTMFSALWSSG---- 383 (534)
Q Consensus 345 ~~~~~~~~A~~~~~------------------------------~~~~~~~~~~~~----~---~~~l~~~~~~~~---- 383 (534)
..-|+.+++.-.|- ..... .++.. . +...+..-...|
T Consensus 319 ~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 319 KLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred cccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 23455555443322 21111 01111 0 111111111222
Q ss_pred -CHHHHHHHHHHHH---HCC------CCCCHHH---------HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChhh
Q 047017 384 -DKIRALGMISEML---SKG------IEPDEIT---------YNSLISCLCRDGMVD---EAVGLLVDMESTRFRPTVIS 441 (534)
Q Consensus 384 -~~~~a~~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 441 (534)
+.+....++.+.. +.| .-|+..+ .+.++..|.+.++.. +|+-+++.-... -+.|..+
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~ 475 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQT 475 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHH
Confidence 1233334443332 222 2334322 356677787877766 344444444433 1334555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
--.+++.|.-.|-+..|.+.++.+--..++.|..-|. +.+.+...|++..+...++...+....
T Consensus 476 KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~ 539 (932)
T KOG2053|consen 476 KLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDS 539 (932)
T ss_pred HHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 5678888988899999999998886666665544433 455677788999999999988886543
No 114
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=1.5e-06 Score=77.43 Aligned_cols=215 Identities=13% Similarity=0.097 Sum_probs=149.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG-KTEDAVDVLRAAKEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (534)
++..+-..+...+..++|+.+..+++..... +..+|+.-..++...| ++++++..++++.+.+.. +..+|......+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 3445555667788999999999999987422 4456666666666777 679999999999987543 556677666666
Q ss_pred HhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CC
Q 047017 310 CKDGRL--DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS---GD 384 (534)
Q Consensus 310 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 384 (534)
.+.|+. +.+..+++.+++.+ +.+..+|.....++...|+++++++.++++++.+ +.|...|+.....+.+. +.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 666663 67888998998875 5678899999999999999999999999999886 66778888877666554 22
Q ss_pred H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 385 K----IRALGMISEMLSKGIEPDEITYNSLISCLCRD----GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 385 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
. ++.+.+..+++... +-+...|+.+...+... +...+|.+++.+..+.+ ..+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 35666666666542 34566676666666552 23345666666655432 2244455555555543
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=4.7e-07 Score=89.84 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=155.3
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh--------
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV-------- 106 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 106 (534)
.....+..|+..+...|++++|.++.+...+.. |.....|..++..+...++..++.-+ .+....+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 356678899999999999999999999877764 44566666666677777777766655 3332222222
Q ss_pred -----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047017 107 -----------FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT 175 (534)
Q Consensus 107 -----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 175 (534)
.++..++.+|-+.|+.++|..+|+++++.. +-|+.+.|.++..|... ++++|.+++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 566777777777777777777777777775 34677777777777777 777777777776543
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 176 VITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR-GCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+...+++..+.+++.++......+.+.-..+.+.+... +...-..++..+-..|-..++|+++..+++.
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 45556777777777777666666666666666666554 3333445566666778888899999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHH
Q 047017 255 MISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~ 275 (534)
+++.... |......++.+|.
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH
Confidence 9988533 6667777777775
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.94 E-value=3.2e-07 Score=90.98 Aligned_cols=238 Identities=10% Similarity=0.061 Sum_probs=154.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667888888888899999999999877766 344 33444444466666665554433 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDK 385 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (534)
+.......++.....+...+... ..+..++..++.+|-+.|+.++|..+|+++.+.. |.|+.+.+.++..|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33344444554444455555553 3345578888999999999999999999999887 78889999999999888 99
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
++|..++.++... +...+++..+.++|.++.... +.+...+..+ .+++
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i----------------~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI----------------ERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH----------------HHHH
Confidence 9999988887653 445567777777777776642 1122222222 2222
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 466 FEK-GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 466 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
... |..--..++..+...|...++|+++..+++.+++..+.+.-+...++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 221 111123344455556666667777777777777777776666666666665
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.94 E-value=1e-07 Score=74.59 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=102.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 389 LGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
..++++.++. .|+. +..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++++..
T Consensus 13 ~~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666653 3443 5566778888999999999999988763 336778888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 469 GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 469 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
++ .+...+..++.++...|++++|+..|+++++..|.++..+...+.+....
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 63 47888888999999999999999999999999999998887777665544
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.2e-06 Score=70.09 Aligned_cols=190 Identities=15% Similarity=0.186 Sum_probs=127.8
Q ss_pred hCCChhHHHHHHHHHHHC---C-CCCCHh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 276 RDGKTEDAVDVLRAAKEK---G-LTPDAY-SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
...+.++..+++..+... | ..++.. .+..++-+....|+.+.|...++.+... ++.+..+-..-+..+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345677788887777642 3 333333 3455566666778888888888887765 343444444444455667788
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
++|+++|+.+.+.+ |.|..++..-+...-..|..-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887775 666677766666666777777777777777765 5667888888888888888888888888887
Q ss_pred HhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 047017 431 ESTRFRPTVISYNIIILGFCKTR---RINESIEVLAAMFEKG 469 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 469 (534)
.-.. +.++..+..+...+.-.| +.+-|.+++.+.++..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7642 334555556666554433 5566777787777754
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.4e-06 Score=81.92 Aligned_cols=271 Identities=14% Similarity=0.152 Sum_probs=202.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 225 CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
.+|-...-..+...+...|-...|..++++.. .|..++.+|...|+..+|..+..+-.++ +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444455667788899999999999998754 4677889999999999999999888884 678888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 305 LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
+++......-+++|.++.+..... +-..+.......++++++.+.|+...+.+ |....+|-.+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 23333444455789999999999998875 7788999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
+..|.+.|...... -+.+...||.+-.+|.+.|+-.+|...+.+..+.+ ..+..+|...+....+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999988874 23356889999999999999999999999999887 44677788888888999999999999998
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHcc-----CCHHHHH-----HHHHHHHHcCCCchHHHHHHHh
Q 047017 465 MFEKG-CKPNETTYVLLIEGIGYG-----GWRAEAM-----ELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 465 ~~~~~-~~~~~~~~~~l~~~~~~~-----g~~~~A~-----~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+.+.. ..-|..+...++....+. ++-..+. +++-+.+..-..++..+...+.
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~~wrL~a~ 675 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPETWRLYAL 675 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchhhhHhHhh
Confidence 87631 111444444444443321 2222222 2333344444446666665554
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=3.5e-07 Score=75.31 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.|... ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++.... -++|...|+.+.
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lg 141 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLG 141 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHH
Confidence 34555 667778888899888888888765542 567777777899999999999999999999876 477899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047017 412 SCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 491 (534)
-+|.+.|+++.|..-|.+..+.. .-++...+.+...+.-.|+.+.|..++......+. -|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChH
Confidence 99999999999999999998863 33567788888899999999999999999987653 36777788888999999999
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHh
Q 047017 492 EAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 492 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 527 (534)
+|+.+...-... +........+.......+.|...
T Consensus 220 ~A~~i~~~e~~~-~~~~~~~~~l~~~~~~~~~~~~~ 254 (257)
T COG5010 220 EAEDIAVQELLS-EQAANNVAALRAAASQSGAWTQL 254 (257)
T ss_pred HHHhhccccccc-hhHhhHHHHHHHhhcccchhHHH
Confidence 999887654432 12223444556666666666543
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=5e-07 Score=78.34 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=128.2
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV---FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV--- 142 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 142 (534)
......+..++..+...|++++|...|+.+....|.++ .++..++.++...|++++|...++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566788888899999999999999999988776554 56788889999999999999999999876 33322
Q ss_pred -hHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHH
Q 047017 143 -TYNIMIGSLCSR--------GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQA 213 (534)
Q Consensus 143 -~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a 213 (534)
++..+..++... |++++|.+.++.+.... |.+...+..+...... ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~~------------------ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RNR------------------ 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HHH------------------
Confidence 455555566544 77888999999888764 3333333222211100 000
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 214 FQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--EPNVVTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
. ......+...+.+.|++.+|+..++....... +.....+..+..++...|++++|...++.+.
T Consensus 165 -------~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 165 -------L-------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred -------H-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 00112455667888888888888888877632 1234677788888888888888888888776
Q ss_pred HC
Q 047017 292 EK 293 (534)
Q Consensus 292 ~~ 293 (534)
..
T Consensus 231 ~~ 232 (235)
T TIGR03302 231 AN 232 (235)
T ss_pred hh
Confidence 64
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=1.1e-07 Score=78.80 Aligned_cols=147 Identities=10% Similarity=0.084 Sum_probs=100.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
-.|...|+++......+.+.. +.. .+...++.+++...++...+.+|.+...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~---~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD---PLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC---ccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 457778888776554432211 100 11225666777777777777778888888888888888888888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHH-HcCCC--HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 125 ANKVLDRLRSRGFSPDVVTYNIMIGSL-CSRGM--IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..++..+...|++++|+..+++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877763 33566666666653 56666 478888888887775 55677777777788888888888888887
Q ss_pred hccc
Q 047017 202 MGMC 205 (534)
Q Consensus 202 ~~~~ 205 (534)
+...
T Consensus 170 aL~l 173 (198)
T PRK10370 170 VLDL 173 (198)
T ss_pred HHhh
Confidence 7333
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1.2e-07 Score=74.16 Aligned_cols=95 Identities=14% Similarity=-0.089 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
+...+..+...|++++|...|+.+...+|.+..++..+..++...|++++|...|++....+ +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 34445555566666666666666666556666666666666666666666666666666542 23455555666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 047017 155 GMIESAFKVFDQLLRD 170 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~ 170 (534)
|++++|...|+..++.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=1.2e-06 Score=72.55 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--hHHH
Q 047017 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGF-CKTRR--INES 458 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 458 (534)
.++.+++...++...+.+ +.+...|..+...|...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 444555555555555542 4456666666666666667777766666666653 22455555555543 45555 3667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
..+++++++.++. +...+..++..+...|++++|+..|+++++..|...+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 7777777666533 55666666666667777777777777777766655433
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=3.8e-06 Score=84.65 Aligned_cols=227 Identities=10% Similarity=0.012 Sum_probs=133.5
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCC---CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEK-GLTP---DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
+...|-..+......++.++|.++.+++... ++.- -...|.++++.-...|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666666666777777666666542 1111 11244555555555566666667777766642 2234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD---EITYNSLISCLC 415 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 415 (534)
.|...|.+.+.+++|.++++.|.+. +......|...+..+.++++-++|..++.++++. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6667777777777777777777665 2345666777777777777777777777666654 222 233444445555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE--TTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 493 (534)
+.|+.+.++.+|+...... +--...|+.+++.-.++|+.+.+..+|++++..++.|-. ..|...+..=-..|+-..+
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 6677777777777666542 224556777777777777777777777777776665532 2333444333344554443
Q ss_pred HH
Q 047017 494 ME 495 (534)
Q Consensus 494 ~~ 495 (534)
+.
T Consensus 1691 E~ 1692 (1710)
T KOG1070|consen 1691 EY 1692 (1710)
T ss_pred HH
Confidence 33
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=7e-06 Score=67.74 Aligned_cols=255 Identities=14% Similarity=0.105 Sum_probs=168.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-+.-.|.+..++.......... -+...-.-+.++|...|.+..... .+.... .|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33445677777776655544331 244444555667777776654332 222222 333444444444444444444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAI-EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
.-. ++.+.+.......+......-+..|+..+++++|++...... +......=...+.+..+.+-|...+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444334444445555667889999999998877622 3334444455667778889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 396 LSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+. .+..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+..+.++...|++++|..+++.++.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 874 255667767766654 45688999999999875 5788999999999999999999999999999987644
Q ss_pred CCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCch
Q 047017 472 PNETTYVLLIEGIGYGGWRAE-AMELANALVSMHAISR 508 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~ 508 (534)
++.+...++-+-...|...+ ..+.+.++...+|..+
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 78888888877777776655 5567888888888776
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=2.9e-06 Score=85.37 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=110.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISR-GLEP---NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
+...|-..|......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3344555555555555555555555555443 1110 11234444444444455555555555555431 1223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHh
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPP--NVSSYNTMFSALWS 381 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 381 (534)
.|...|.+.+..++|.++++.|.+. +......|...+..+.+.++.+.|..++.++.+. .|. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhh
Confidence 5555555566666666666655554 1234455555555555555555565555555543 122 23334444445555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCC
Q 047017 382 SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTV--ISYNIIILGFCKTRR 454 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 454 (534)
.|+.+++..+|+..+.. .+-....|+.+++.-.++|+.+.++.+|+++...++.|-. ..|...+..--..|+
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 56666666666555544 2224455666666666666666666666666555544432 233344433333444
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=1.2e-06 Score=78.76 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=126.3
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMI 148 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 148 (534)
.....+..........|++++|+..+..+.+..|.|+..+......+.+.|+.++|.+.++++... .|+ ...+..+.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a 381 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLA 381 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHH
Confidence 345566666677788999999999999999998999999999999999999999999999999988 666 66677888
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR 223 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 223 (534)
.+|.+.|++.+|..+++...... +.++..|..|.++|...|+..++.....+. +...|.+++|...+....+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998875 889999999999999999999888776664 44556666666665555443
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.5e-05 Score=65.89 Aligned_cols=86 Identities=21% Similarity=0.269 Sum_probs=38.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 239 LLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
+.+..+++-|.+.+++|.+.. +..+.+.|+.++.+ .+...+|.-+|+++.++ .+|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444455555555554331 33344434333322 23344455555554442 23444444444444455555
Q ss_pred HHHHHHHHHHHHHC
Q 047017 315 LDLAIEFLDYMISD 328 (534)
Q Consensus 315 ~~~a~~~~~~~~~~ 328 (534)
+++|..+++.++..
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554444
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.77 E-value=4.5e-06 Score=82.31 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+...+..+.....+.|..++|..+++.+.+.. |.+......++.++.+.+++++|+..+++..... +.+......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444444444555555555555555544442 3444444444444555555555555554444431 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555444321 12234444444444444555555555544444
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=1.8e-06 Score=85.09 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=120.9
Q ss_pred CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 68 CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIM 147 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 147 (534)
.+.+..++..|+.+..+.|.+++|..+++.+.+..|.+..++..++..+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 466799999999999999999999999999999999999999999999999999999999999999883 2356667788
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999854 566889999999999999999999999987
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=1.2e-06 Score=68.34 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=83.7
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS 138 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 138 (534)
.++.++... +.+......++..+...|++++|...|+.+...+|.+...+..+..++...|++++|..++++....+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 455555543 33556667777778888888888888888887777788888888888888888888888888877663 3
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.+...+..+..++...|++++|...|+...+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456677777788888888888888888887753
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=3.4e-05 Score=63.33 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=147.8
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCH
Q 047017 241 NMGKWEEGEKLMTEMISR---G-LEPNVVT-YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRL 315 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (534)
...+.++..+++..++.. | ..++..+ +..++-+....|+.+.|..+++.+... ++-+..+-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 456789999999888654 3 4555543 556667778899999999999998886 344555554445556778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
++|+++++.+++.+ +.|..++..-+...-..|+.-+|++-+....+. ++.|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999886 667777777777777888888999999888887 5889999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Q 047017 396 LSKGIEPDEITYNSLISCLCRDG---MVDEAVGLLVDMESTR 434 (534)
Q Consensus 396 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 434 (534)
.-.. |-++..+..+...+...| +...+.++|.+..+..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8752 334555566666554444 5678899999988753
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4.8e-05 Score=68.69 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=106.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDG 418 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 418 (534)
....+...|++++|+..++.+.+. .|.|+..+......+...++..+|.+.++++... .|+ ......+..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcC
Confidence 344455678888888888887776 3677777777788888888888888888888875 444 455666777888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
++.+|..++++.... .+.++..|..|..+|...|+..++.....+ .+...|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 888888888887765 355788888888888888887776654443 3455678888888888
Q ss_pred HHHHcC
Q 047017 499 ALVSMH 504 (534)
Q Consensus 499 ~~~~~~ 504 (534)
.+.+..
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 777765
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.63 E-value=0.00066 Score=66.14 Aligned_cols=433 Identities=15% Similarity=0.135 Sum_probs=231.7
Q ss_pred ChhhHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 36 KETQFMKLIKRSF--RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
+...|..+++++. +.|+.++|..+++.....+ +.|..+...+-.+|...|+.++|..+|+.+.+..|. ......+.
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 4455677777654 8999999999988876654 447888888899999999999999999999998766 77788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC----------HHHHHHHHHHHHhCC-CCCCHhhHHHH
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM----------IESAFKVFDQLLRDN-CKPTVITYTIL 182 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~-~~~~~~~~~~l 182 (534)
.+|.+.+++.+-.+.--++-+. ++-+.+.+-++++.+...-. ..-|.+.++.+.+.+ .-.+..-....
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 8999988877655444444333 23345555556655543211 123444555555432 11111111112
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP 262 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 262 (534)
.......|++++|.+++.. ...+.-...+...-+.-+..+...++|.+..++-.++...+..
T Consensus 197 l~iL~~~~k~~eal~~l~~-----------------~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D- 258 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAI-----------------TLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND- 258 (932)
T ss_pred HHHHHhcccHHHHHHHHHH-----------------HHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-
Confidence 2223344555555555522 2222223334444445566666777777777777777666422
Q ss_pred ChhhHHH----HHHH---------HHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHH---hcCCHHHHHHHH----
Q 047017 263 NVVTYSI----LISS---------LCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYC---KDGRLDLAIEFL---- 322 (534)
Q Consensus 263 ~~~~~~~----l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~---- 322 (534)
|-.+|.. ++.. +...+..+...+..++..... ....|-+-+.+.. .-|+.+++...|
T Consensus 259 dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 259 DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 2111111 1110 011112222222222222211 1112222222222 234554433322
Q ss_pred --------------------------HHHHHCCCCCCHH-------HHHHHHHHHHhCCC-----HHHHHHHHHHHh---
Q 047017 323 --------------------------DYMISDGCLPDIV-------NYNTILAAFCKNGN-----ADQALEIFEKLS--- 361 (534)
Q Consensus 323 --------------------------~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~~~~~--- 361 (534)
...... .++.. .+...+..-.-.|. .+.-..++++..
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~y 413 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTY 413 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHH
Confidence 222211 11111 01112222222332 233444444432
Q ss_pred hCCC------CCCHh---------hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 362 DVGC------PPNVS---------SYNTMFSALWSSGDKI---RALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 362 ~~~~------~~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+.|. -|... +.+.++..+.+.++.. +|+-+++...... +-+..+--.+++.|.-.|-+..|
T Consensus 414 e~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a 492 (932)
T KOG2053|consen 414 EKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDA 492 (932)
T ss_pred hccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhH
Confidence 2221 11211 3456677888888765 4555565555542 33556667788999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
.+++..+.-..+..|...|. +...+...|++..+...+....+.--..-.++-..++. -.+.|.+....+..
T Consensus 493 ~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~-AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 493 YELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIAL-AYRRGAYSKIPEML 564 (932)
T ss_pred HHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHH-HHHcCchhhhHHHH
Confidence 99999886655666655443 34556678899999998888776311112233333333 44566777766554
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=2.5e-06 Score=66.60 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.....+...+...|++++|...|+.+...+ +.+...+..++.++...|++++|...++.....+|.+...+..+..++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 446677788999999999999999998875 6688999999999999999999999999999988999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYN 145 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (534)
..|++++|.+.|+...+. .|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 999999999999999987 55554433
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.6e-06 Score=71.52 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=130.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHH
Q 047017 238 TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (534)
.+.+..++.+|+..+...++..+. +...|..-+..+...|+++++.--.+...+.... ..........++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 344555566666666666655322 3444444444455555555555444443332110 11122222233333333333
Q ss_pred HHHHH---------------HHHHHCCC-CCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 047017 318 AIEFL---------------DYMISDGC-LPDIVNYNTI-LAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALW 380 (534)
Q Consensus 318 a~~~~---------------~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (534)
|...+ +.+..... +|.-..+..+ ..++.-.++.++|..+--...+.. +.+......-..++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccc
Confidence 33222 22222111 1222333332 345556777888877777766654 334444433344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPDEITY-------------NSLISCLCRDGMVDEAVGLLVDMEST---RFRPTVISYNI 444 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~ 444 (534)
..++.+.+...|++.+.. .|+...- ..-..-..+.|++..|.+.+.+.+.. +..|+...|..
T Consensus 215 y~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 667777888888777664 3443221 11122334567777777777666643 22334444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
...+..+.|+.++|+.--+++++.+.. =...+..-.+++...++|++|.+.++++.+....
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 555566667777777666666553210 1122233334555666777777777777665544
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.6e-07 Score=51.90 Aligned_cols=32 Identities=47% Similarity=1.003 Sum_probs=23.7
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 136 GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=3.3e-06 Score=76.82 Aligned_cols=122 Identities=15% Similarity=0.046 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 374 TMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.++..+...++++.|+.+++++.+.. |+. ...++..+...++-.+|.+++++..... +.+...+..-+..+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444445556666666666665542 332 2334555555555556666665555431 223444444455555666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 454 RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
+++.|+.+.+++.+.. +.+..+|..|+.+|...|++++|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666665542 2244556666666666666666665555443
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=1.1e-05 Score=63.64 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCCHhHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPD---VFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 159 (534)
.++...+...++.+....+.+ ..+...+...+...|++++|...|+.+......+. ......+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 555555655566665555444 23334445555666666666666666665531111 1223345555666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
|+..++..... ......+...+.+|...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666553222 23334455566666666666666666654
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.47 E-value=1.2e-07 Score=66.53 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=51.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCK-PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 530 (534)
.|+++.|+.+++++++.... ++...+..++.++.+.|++++|..++++ .+.++.++.....+++++..+|+|++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777777765432 2344455567777777777777777777 555566666666667777777777777776
Q ss_pred hcc
Q 047017 531 ATK 533 (534)
Q Consensus 531 ~~k 533 (534)
+.|
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=1.1e-05 Score=73.48 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=91.7
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
......++..+...++++.|+.+|+++.+.. +.....++..+...++..+|.+++.+..... +.+...+......+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344456666677778888888888887654 3355567777777788888888888877652 33566666666777
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
...++++.|+.+.+++.... |.+..+|..|+.+|...|+++.|+..++.+
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888888887764 555668888888888888888888888776
No 143
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=4.2e-07 Score=50.24 Aligned_cols=32 Identities=38% Similarity=0.844 Sum_probs=16.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=2.2e-05 Score=61.89 Aligned_cols=127 Identities=11% Similarity=0.110 Sum_probs=100.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---hhhHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---VFAYN 110 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 110 (534)
...|..++..+ ..++...+...++.+.... +.+ ..+...+...+...|++++|...|+.+....+.+ ..+..
T Consensus 12 ~~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 12 SALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 34566677666 5899999999999998864 333 3455667788999999999999999999876222 34667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 111 ALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
.+..++...|++++|+..++..... ......+.....+|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7889999999999999999775433 334556778889999999999999999875
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.40 E-value=1.6e-05 Score=60.43 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFR--PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 480 (534)
.++..++..+...|++++|.+.+..+...... .....+..+..++...|+++.|...++.+....+.. ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777888888888888888764211 113456667888888888888888888888753321 24567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
+.++.+.|++++|...++++++..|.++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 888888889999999999998888877755443
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00054 Score=60.70 Aligned_cols=277 Identities=9% Similarity=-0.026 Sum_probs=159.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
.......+.+..++..|+..+..++... +.+...|..-+..+...|++++|..-.+.-.+..+...........++...
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 4455567778889999999999999875 556777777788888889999888777666655544444555555555555
Q ss_pred CCHHHHHHHHHHH---------------HhCC-CCCChhhHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 120 NQIELANKVLDRL---------------RSRG-FSPDVVTYNIM-IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 120 g~~~~a~~~~~~~---------------~~~~-~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
++..+|.+.++.- .... -+|....|..+ ..++.-.|++++|..+--.+++.. +.+......-
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vr 209 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVR 209 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhc
Confidence 5555555444421 1110 11223334333 355667788888888777777654 3344433333
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHH--HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQ--AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG- 259 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 259 (534)
..++.-.++.+.+...|++..-......+. +..-.+. ...+..-.+-..+.|++..|.+.|.+.+...
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~---------le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK---------LEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH---------HHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 344445666677766666551111100000 0000000 0112222334566777788888777776542
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 260 --LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 260 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
..|+...|........+.|+..+|+.-.+...+.+.. -...+..-..++...++|+.|.+-++...+.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555666666667777777777777776654210 1122333344555667777777777766654
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=1.6e-05 Score=61.19 Aligned_cols=100 Identities=10% Similarity=-0.019 Sum_probs=87.7
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
.+.+....+...+...|++++|..+|+.+...+|.+...|..|..++-..|++++|+..|......+ +.|+..+..+..
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3556677778888899999999999999999999999999999999999999999999999998885 347888888999
Q ss_pred HHHcCCCHHHHHHHHHHHHhC
Q 047017 150 SLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~ 170 (534)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988875
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=2.3e-05 Score=59.60 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCK--PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNAL 112 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l 112 (534)
..+..+...+.+.|++++|.+.|+.+.+.... ....++..++.++...|+++.|...|+.+....|. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34555566666666666666666666553211 11334555666666666666666666666554422 23445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 047017 113 ISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55666666666666666665554
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.33 E-value=0.0021 Score=57.90 Aligned_cols=435 Identities=12% Similarity=0.087 Sum_probs=216.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhh------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVM------CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
+-+++++.+|.++|.++.+.. ..++.. -+.++++|.. ++.+.....+....+..+.....-.-..-.+.+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 447899999999999987652 222222 2456666653 55777777666666665544433333333455789
Q ss_pred CHHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC----CCCHhhHHHH
Q 047017 121 QIELANKVLDRLRSR--GFSP------------DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC----KPTVITYTIL 182 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l 182 (534)
.+.+|.+.+..-.++ +..+ |...-+..+.++...|++.++..+++++...-. .-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 999999988776654 2221 111224567788899999999999999876533 3677888875
Q ss_pred HHHHHhc--------CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhcC--CHH
Q 047017 183 IQATMLE--------GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR------GCQPDVISYNMLLRTLLNMG--KWE 246 (534)
Q Consensus 183 ~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~ 246 (534)
+-.+.+. ...+-....++.+ .-+.+++... .+-|.......++....-.. ...
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemi-----------lfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~ 242 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMI-----------LFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLP 242 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHH-----------HHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhcc
Confidence 5444322 1222222233222 1111222111 12233333333433332211 112
Q ss_pred HHHHHHHHHHHCCCCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCC----CHhcHHHHHHHHHhcCCHHHHHHH
Q 047017 247 EGEKLMTEMISRGLEPNVVT-YSILISSLCRDGKTEDAVDVLRAAKEKGLTP----DAYSYDPLISAYCKDGRLDLAIEF 321 (534)
Q Consensus 247 ~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 321 (534)
--.++++.....-+.|+... ...+...+.. +.+++..+.+.+....+.+ -..+|..++....+.++...|...
T Consensus 243 ~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 243 PLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred HHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22333333333334444332 2223333322 4444444444433321110 123566666667777777777666
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHH-HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHH---HHHHHhcCC-HHHH
Q 047017 322 LDYMISDGCL--------PDIVNYNTILAA-FCKNGNADQALEIFEKLSDVGCPPNVSSYNTM---FSALWSSGD-KIRA 388 (534)
Q Consensus 322 ~~~~~~~~~~--------~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~-~~~a 388 (534)
+.-+...+.. ....++..++.. =...-+...=+.+|+.....++ ........+ +.-+.+.|. -++|
T Consensus 321 l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~Ak~lW~~g~~deka 399 (549)
T PF07079_consen 321 LALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGAKHLWEIGQCDEKA 399 (549)
T ss_pred HHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHhcCCccHHH
Confidence 6555443211 111222222210 0001122233444554444321 112222222 334555665 6677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH----HHHH---hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHH--HHhcCCh
Q 047017 389 LGMISEMLSKGIEPDEITYNSLI----SCLC---RDGMVDEAVGLLVDMESTRFRPTV----ISYNIIILG--FCKTRRI 455 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~ 455 (534)
+.+++.+.+-. +-|...-+.+. ..|. ....+.+-..+-+-+.+.|++|-. ..-|.|.++ +...|++
T Consensus 400 lnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 400 LNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 77777776531 22322222211 1222 123344444444445556666532 233333332 4457777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.++.-+-.-..+ +.|++.+|..++-++....++++|..++..+
T Consensus 479 ~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 777654443333 4677788887777777777888888777665
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.33 E-value=1.8e-05 Score=72.56 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
......++..|++++|+..|+++++.+ +.+...|..++.++...|++++|+..++.+...+|.+..+|..+..+|...|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345667788888889998888888875 5677888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhh
Q 047017 121 QIELANKVLDRLRSRGFSPDVVT 143 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~ 143 (534)
++++|...|++.... .|+...
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSR 105 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHH
Confidence 888888888888876 444333
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.32 E-value=2.3e-05 Score=71.89 Aligned_cols=111 Identities=11% Similarity=-0.116 Sum_probs=85.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..++++++.+. .+...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 345567788888888888887763 23566777778888888888888888888888653 3667777888888888888
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 491 AEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
++|+..|+++++.+|.++.....+.++......
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 888888888888888888888777777666543
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=1.4e-05 Score=57.96 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+..+...+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++......+.+..++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4555666666777777777777766553 334455666666666667777777777776666655556666666666666
Q ss_pred CCHHHHHHHHHHHHh
Q 047017 120 NQIELANKVLDRLRS 134 (534)
Q Consensus 120 g~~~~a~~~~~~~~~ 134 (534)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 777776666666554
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.27 E-value=2.3e-05 Score=60.31 Aligned_cols=91 Identities=9% Similarity=-0.019 Sum_probs=48.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
+...+...|++++|.++|+.+...+ +.+..-|..|+.++-..|++++|+..|......++.++..+..+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3344445555555555555554443 344455555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 047017 123 ELANKVLDRLRS 134 (534)
Q Consensus 123 ~~a~~~~~~~~~ 134 (534)
+.|.+.|+..+.
T Consensus 120 ~~A~~aF~~Ai~ 131 (157)
T PRK15363 120 CYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.25 E-value=2.2e-06 Score=60.15 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=50.7
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCK-PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|..+++. .+.++.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777765421 2444555567777777777777777766 333344445555667777777777777777
Q ss_pred HHH
Q 047017 129 LDR 131 (534)
Q Consensus 129 ~~~ 131 (534)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2e-05 Score=66.56 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=49.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHH
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 159 (534)
-+.+.+++.+|+..|..+++..|.|+..|..-..+|.+.|.++.|++-.+..+.. .| -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 3445555666666666666555555555555555666666666665555555544 22 24455555555666666666
Q ss_pred HHHHHHHHHhC
Q 047017 160 AFKVFDQLLRD 170 (534)
Q Consensus 160 a~~~~~~~~~~ 170 (534)
|.+.|++.++.
T Consensus 168 A~~aykKaLel 178 (304)
T KOG0553|consen 168 AIEAYKKALEL 178 (304)
T ss_pred HHHHHHhhhcc
Confidence 66655555543
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.19 E-value=0.00061 Score=58.60 Aligned_cols=165 Identities=11% Similarity=0.092 Sum_probs=116.5
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh---hh
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVM---CTKLIKKFFQERKSNKAVRVMEILEKYGEPDV---FA 108 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 108 (534)
.++..+......+...|++++|...|+.+.... |.+..+ ...++.++.+.+++++|...++...+..|.++ .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 456666677788899999999999999998864 222333 35677899999999999999999999884443 33
Q ss_pred HHHHHHHHHhcC---------------C---HHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHH
Q 047017 109 YNALISGFCKAN---------------Q---IELANKVLDRLRSRGFSPDVVT------------------YNIMIGSLC 152 (534)
Q Consensus 109 ~~~l~~~~~~~g---------------~---~~~a~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~ 152 (534)
+..++.+....+ + ...|.+.|+.+++. -|+..- -..+...|.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433321111 2 34577888888776 555321 112345678
Q ss_pred cCCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLRD--NCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.|.+..|..-++.+++. +.+........+..+|...|..++|.++...+
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 889999999999999875 22344556778888999999999988876654
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=4.1e-05 Score=64.74 Aligned_cols=106 Identities=12% Similarity=0.024 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
-..+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+.. -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4556788888888888888763 235666777778888888888888888888776432 46778888888888888888
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 493 AMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
|++.|+++++++|.+......|..+-..
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 8888888888888888666666554433
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=0.00013 Score=59.49 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
..+..+...+...|++++|...|+++++....+ ....+..++.++...|++++|...+++.....|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666666777777777777777776543222 134666677777777777777777777776666666666666666
Q ss_pred HHhcCCHHHHH
Q 047017 116 FCKANQIELAN 126 (534)
Q Consensus 116 ~~~~g~~~~a~ 126 (534)
+...|+...+.
T Consensus 116 ~~~~g~~~~a~ 126 (172)
T PRK02603 116 YHKRGEKAEEA 126 (172)
T ss_pred HHHcCChHhHh
Confidence 66666654443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=4.9e-05 Score=55.04 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+.+..+.+..++..+..++...|++++|.+.++...... +.+...+..+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 355667777788888888888888887777677778888888888888888888888877663 3344567777778888
Q ss_pred CCCHHHHHHHHHHHHhC
Q 047017 154 RGMIESAFKVFDQLLRD 170 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~ 170 (534)
.|+++.|...+....+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 88888888888777654
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.13 E-value=1.3e-05 Score=52.94 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
+...+...|++++|...|+++++..+. +...+..++.++...|++++|..+|+++++..|.+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888888877532 677777888888888888888888888888877664
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.12 E-value=0.00033 Score=54.71 Aligned_cols=126 Identities=13% Similarity=0.054 Sum_probs=74.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGF-SPDVVTYNI 146 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 146 (534)
.|+..-...+..++...|++.+|...|++...-- ..+......+..+....+++..|...++.+.+.+. ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666667777777777777776666543 55666666666666667777777777776665520 012344455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
+.+.+...|.+..|...|+..... -|+..........+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 666677777777777777766654 344443333344445556554443
No 162
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.11 E-value=0.0066 Score=54.75 Aligned_cols=133 Identities=9% Similarity=0.005 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..|++.+...|.+++..++++++... .+.-+.+|..-+..-...+++.....+|...+.. ..+...|...+..
T Consensus 41 nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ldLW~lYl~Y 118 (660)
T COG5107 41 NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SLNLDLWMLYLEY 118 (660)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hccHhHHHHHHHH
Confidence 5567999999999999999999999998754 3556778888888777888999999999988875 5557778777766
Q ss_pred HHhcCCH------HHHHHHHHHHHh-CCCCCC-hhhHHHHHHHHH---cCCC------HHHHHHHHHHHHhC
Q 047017 116 FCKANQI------ELANKVLDRLRS-RGFSPD-VVTYNIMIGSLC---SRGM------IESAFKVFDQLLRD 170 (534)
Q Consensus 116 ~~~~g~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~g~------~~~a~~~~~~~~~~ 170 (534)
-.+.++. -...+.|+-... .++.|- ...|+..+..+. ..|. .+.....|.+++..
T Consensus 119 IRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 119 IRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 5554321 112333443332 345553 344555444332 2333 45566667777654
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=9.2e-05 Score=65.42 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ-ERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
+|..+++...+.+..+.|+.+|.++.+.+ ..+...|...+..-.. .++.+.|.++|+...+..+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 68888888888888999999999998543 4456677766666445 566666999999999888999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSRGFSPDV----VTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
..|+.+.|..+|++.... -+.. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999876 3333 47888888888889999999999888875
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.09 E-value=5.1e-05 Score=56.39 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGI 484 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~ 484 (534)
.+..++-..|+.++|..+|++....|.... ...+..+..++...|++++|..++++.....+.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 456677788999999999999998876654 4466678888999999999999999988753221 223333455577
Q ss_pred HccCCHHHHHHHHHHHHH
Q 047017 485 GYGGWRAEAMELANALVS 502 (534)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~ 502 (534)
...|+.++|.+.+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888999999988876654
No 165
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=0.00027 Score=52.53 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPD--VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALIS 114 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 114 (534)
...+...+-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..+++......|. +......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44556667778888888888888877664433 445666777777888888888888777766433 4444444455
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047017 115 GFCKANQIELANKVLDRLR 133 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~ 133 (534)
++...|+.++|++.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6667777777777776555
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.07 E-value=1.5e-05 Score=53.35 Aligned_cols=66 Identities=23% Similarity=0.217 Sum_probs=51.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 450 CKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
...|++++|+.+|+++.+..+. +...+..++.+|.+.|++++|.++++++....|.++..+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678888999999888887543 77777788888899999999999999998888887766655543
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.04 E-value=8.6e-05 Score=65.42 Aligned_cols=269 Identities=14% Similarity=0.088 Sum_probs=166.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHH--Hc--C--CCChhhHHHHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILE--KY--G--EPDVFAYNALI 113 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~--~~~~~~~~~l~ 113 (534)
...+++.|+....+.+|+.+++.| ..| +.+|..|+++|.-.+++++|+++...=+ .+ + .....+-..+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 357899999999999999999987 333 3467788889999999999988653211 11 1 12223334455
Q ss_pred HHHHhcCCHHHHHHHHHH----HHhCCCC-CChhhHHHHHHHHHcCCC--------------------HHHHHHHHHHHH
Q 047017 114 SGFCKANQIELANKVLDR----LRSRGFS-PDVVTYNIMIGSLCSRGM--------------------IESAFKVFDQLL 168 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~ 168 (534)
..+--.|.+++|.-...+ ..+.|-. .....+..+..+|...|+ ++.|.+.|.+=+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555566777777654333 2222211 124455566677765543 223344443322
Q ss_pred h----CCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhc
Q 047017 169 R----DNC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ-PDVISYNMLLRTLLNM 242 (534)
Q Consensus 169 ~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 242 (534)
+ .|- -.--.+|..|.+.|.-.|+++.|+...+.- +.+ ..+.|-. .....+..+.+++.-.
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~R-----------L~i---a~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLR-----------LEI---AQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHH-----------HHH---HHHhhhHHHHHHhhcccchhhhhh
Confidence 1 110 011235666677777778888877665432 111 1122211 1345677888999999
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-----CCCCCHhcHHHHHHHHHhc
Q 047017 243 GKWEEGEKLMTEMISR----GL-EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK-----GLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 243 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 312 (534)
|+++.|.+.|+..... |- .........+...|.-..++++|+.++.+-... +..-....+..+..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999988775432 21 223445667888888888899999988765431 1122456788899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMIS 327 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~ 327 (534)
|..++|+.+.+...+
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988776554
No 168
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00029 Score=60.18 Aligned_cols=112 Identities=10% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN---QIELANKVLDRLRS 134 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~ 134 (534)
.-++.-++.+ |.|.+.|..|+.+|...|++..|...|....+..++++..+..+.+++..+. ...++..+|+++..
T Consensus 143 a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3334334443 6677788888888888888888888888888877788887777777766553 34567778888776
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 135 RGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.. +.|+.+...|...+...|++.+|...++.|.+..
T Consensus 222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 63 3356666677777788888888888888887764
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.04 E-value=0.00035 Score=56.94 Aligned_cols=92 Identities=13% Similarity=0.031 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 047017 104 PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTI 181 (534)
Q Consensus 104 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (534)
.....+..++..+...|++++|...|++....+..+. ...+..+..++.+.|++++|...+++..... +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3444566666667777777777777777665422211 3456667777777777777777777777654 445566666
Q ss_pred HHHHHHhcCCHhHHH
Q 047017 182 LIQATMLEGQTDKAM 196 (534)
Q Consensus 182 l~~~~~~~g~~~~a~ 196 (534)
++.++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 677776666654443
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=2.8e-05 Score=51.31 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP 104 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 104 (534)
+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|...|+.+.+..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445556666666666666665554 445555666666666666666666666665555443
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.00061 Score=65.45 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred CCCCHhhHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 047017 365 CPPNVSSYNTMFSALWSS--G---DKIRALGMISEMLSKGIEPD-EITYNSLISCLCRD--------GMVDEAVGLLVDM 430 (534)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 430 (534)
.+.+...|...+++.... + +...|..+|+++.+. .|+ ...+..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356667777776664332 2 355777777777774 444 33444333333221 1223444444443
Q ss_pred HhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 431 EST-RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 431 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
... ....+...|..+.......|++++|...++++++.+ |+...|..+++.+...|+.++|.+.++++++++|..+.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332 123345677777777777899999999999999875 57888899999999999999999999999999998874
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.02 E-value=0.00048 Score=61.24 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----h-hhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHH
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-----V-ISYNIIILGFCKTRRINESIEVLAAMFEKG--CKPN--ETT 476 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~ 476 (534)
+..+...+.+.|++++|.++|+++.......+ . ..+...+-++...||+..|.+.+++..... +..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34444455555555555555555543311111 1 111222334444555555555555554431 1111 223
Q ss_pred HHHHHHHHHc--cCCHHHHHHHHHHHHHcC
Q 047017 477 YVLLIEGIGY--GGWRAEAMELANALVSMH 504 (534)
Q Consensus 477 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~~ 504 (534)
...|+.++-. ...++++..-|+.+.+++
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 3344444442 223444444444444433
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=2.8e-05 Score=52.11 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCC
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG-WRAEAMELANALVSMHA 505 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 505 (534)
++..|..+...+...|++++|+..|+++++.++. +...+..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3455666666677777777777777777766422 5566666666777776 57777777777766654
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.02 E-value=1.9e-05 Score=52.81 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=24.5
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|+.+|+.+....|.+..++..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.01 E-value=0.01 Score=53.50 Aligned_cols=432 Identities=10% Similarity=0.049 Sum_probs=244.2
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047017 58 YFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF 137 (534)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 137 (534)
++=+++... |.|...|..|+.-+..+|..++.++.++++..-.|--+.+|...+..-...+++.....+|.+.+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--
Confidence 455555443 7789999999999999999999999999999877778889999999888899999999999998877
Q ss_pred CCChhhHHHHHHHHHcCCCH------HHHHHHHHHHHhC-CCCC-CHhhHHHHHHHH---H------hcCCHhHHHHHHH
Q 047017 138 SPDVVTYNIMIGSLCSRGMI------ESAFKVFDQLLRD-NCKP-TVITYTILIQAT---M------LEGQTDKAMKLLD 200 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~---~------~~g~~~~a~~~~~ 200 (534)
..+...|...+..-.+.+.. ....+.|+-.+.. ++.| ....|+..+... - .+.+++.....+.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 44677777777655554322 2334555555542 3333 223344433322 1 2334556666777
Q ss_pred HhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CChhh--------
Q 047017 201 EMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GLE----PNVVT-------- 266 (534)
Q Consensus 201 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~-------- 266 (534)
++.-...|+.++-++-++..... .+..|-...+. -..--+-.|...++++... |.. .+..+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 77666777777777666554432 11111111110 0001122334444433221 111 11122
Q ss_pred ---HHHHHHHHHhC-----CC-h-hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 267 ---YSILISSLCRD-----GK-T-EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 267 ---~~~l~~~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
|...|..-... |+ . ...--++++.... +...+.+|..-..-+...++-+.|+....+.... .|+ .
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--h
Confidence 22222211111 11 0 1111222222221 1223333333333344566667777666554332 122 2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh--------------CCCC---------------CCHhhHHHHHHHHHhcCCHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSD--------------VGCP---------------PNVSSYNTMFSALWSSGDKIR 387 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~---------------~~~~~~~~l~~~~~~~~~~~~ 387 (534)
...+...|.-.++.+.....|++... .+.. .-..+|...+....+....+.
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~a 415 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEA 415 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Confidence 22233333333344333333333211 0110 012234455555666677888
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHH
Q 047017 388 ALGMISEMLSKG-IEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS-YNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 388 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
|..+|-++.+.+ +.++..++++++..++ .|+...|..+|+--... -||... .+..+..+...++-+.|..+|+..
T Consensus 416 aR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 416 ARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 888888888777 5566777788777665 57788888888765544 334333 345666677788888888888866
Q ss_pred HHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 466 FEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 466 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
+.. +..+ ..+|..++.-=..-|+...+..+-+++.+..|..
T Consensus 493 v~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 653 1222 4677777777777888888888888888877754
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.00 E-value=0.0032 Score=54.24 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY---NALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...+..+...|++++|...|+.+....|.+..+- ..++.++.+.++++.|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33444444555666666666666655554443332 34455555556666666666555554
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.00 E-value=0.00018 Score=58.43 Aligned_cols=64 Identities=6% Similarity=-0.157 Sum_probs=32.2
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...+..++..+...|++++|...|+.+....+. ...++..+..++...|++++|.+.+++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334444555555555555555555555443311 1234555555555555555555555555543
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=1.7e-05 Score=53.19 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH-HHHHhhhhhcc
Q 047017 473 NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD-VYKEISHLATK 533 (534)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~k 533 (534)
+..+|..++..+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|...+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 89999887654
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=8.5e-05 Score=60.33 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=42.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
.|..++..+...|++++|...+++++.....+ ...++..+...+...|++++|+..++++++..|.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444555555566666666665555432221 1234555555566666666666666666666555555555555555
Q ss_pred c
Q 047017 519 P 519 (534)
Q Consensus 519 ~ 519 (534)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 5
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.94 E-value=0.0015 Score=58.00 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hh-hHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN-----VV-TYSILISSLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (534)
.+..+...+.+.|++++|.++|+++.......+ .. .+...+-++...||...|...++.....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555556666666666666666554322111 11 1222233444556666666666655543
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00034 Score=59.71 Aligned_cols=111 Identities=11% Similarity=0.061 Sum_probs=95.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQER---KSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+...|..|.+.|...|+++.|...|+++.+.. ++++..+..+..++..+. .-.++..+|+++.+.++.+..+...+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 67789999999999999999999999999976 778888888888775543 34689999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 99999999999999999999988 444455555554
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.92 E-value=0.00054 Score=59.35 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC---CChhhHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGE---PDVFAYNAL 112 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l 112 (534)
..|...+..+.+.|++++|+..|+.+++..+.. ...++..++.++...|++++|...|+.+....| ....++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 344554444567789999999999988763211 136788888888899999999999998887653 345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
+.++...|+.++|..+|+.+.+. .|+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 77888888888888888888876 4543
No 183
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=2.6e-05 Score=43.87 Aligned_cols=33 Identities=36% Similarity=0.800 Sum_probs=19.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT 175 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 175 (534)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
No 184
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=3.3e-05 Score=43.42 Aligned_cols=33 Identities=39% Similarity=0.914 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
+|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00069 Score=59.91 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS-SGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
|..++....+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 4444444444445555555555554332 2233444444444222 33444455555555543 3334444555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
..|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555443 11111 2444444444444555555555444444
No 186
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=3.5e-05 Score=42.91 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
+|+.++.+|.+.|+++.|..+++.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.85 E-value=0.00076 Score=58.45 Aligned_cols=106 Identities=10% Similarity=-0.003 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK--PNETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 480 (534)
..|...+....+.|++++|...|+.+++..+... ...+..+..+|...|++++|...|+.+++..+. .....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667899999999999987622211 346778889999999999999999999875322 235566667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
+.++...|++++|.++|+++++..|.+..+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 788889999999999999999999987744
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0011 Score=63.69 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=67.4
Q ss_pred CCCHhhHHHHHHHHHh--cC---CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQ--ER---KSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN--------QIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~ 135 (534)
+.+..+|...+++... .+ ....|..+|+++.+.+|....++..+..++.... +...+.+..++....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 5555555555554322 11 2445666666666666665555555444333221 122333333333222
Q ss_pred -CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 136 -GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 136 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.+...|..+...+...|++++|...++++...+ |+...|..++..+...|+.++|.+.+++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 112234455555444455566666666666666553 35556666666666666666666666655
No 189
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.004 Score=52.20 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=36.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCch---HHHHHHHhhcchHHHHHHh
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISR---DTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~ 527 (534)
.+++.|.+.|.+..|..-++.+++..|.++ +++..++..|..+|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 466778888888888888888888888766 5677777888777776644
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0092 Score=46.98 Aligned_cols=132 Identities=14% Similarity=0.041 Sum_probs=72.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFR-PTVISYNI 444 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ 444 (534)
.|....-..+..+....|++.+|...|++...--.--|......+.++....+++..|...++++.+.... -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34455555566666666666666666666655434445555556666666666666666666666554210 01223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANA 499 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 499 (534)
+.+.+...|++..|...|+.+++. -|+..........+.++|+.+++..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556666666666666666666654 33444433444445566655555444333
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00044 Score=63.57 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 329 GCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV--GCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEIT 406 (534)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (534)
+.+.+......++..+....+.+.+..++.+.... ....-+.+...+++.|...|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677778888888888888898888888765 2222334556899999999999999999998888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT 452 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 452 (534)
++.|+..+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888776666777766666666554
No 192
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=3.8e-05 Score=42.77 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=18.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 174 (534)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.79 E-value=0.0019 Score=54.09 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=105.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYN 110 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 110 (534)
++..+......+...|++.+|...|+.+....+ +....+...++.++.+.|+++.|...++.+....|.++. ++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 455667778889999999999999999987532 334567788899999999999999999999988755443 343
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhh------------------HHHHHHHHHcCCCHHHHH
Q 047017 111 ALISGFCKA-----------NQIELANKVLDRLRSRGFSPDVVT------------------YNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 111 ~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~------------------~~~l~~~~~~~g~~~~a~ 161 (534)
.++.++... +...+|...|+.++.. -|+..- -..+...|.+.|.+..|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 334333222 2345778888888776 444321 112456788889999999
Q ss_pred HHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHhHHH
Q 047017 162 KVFDQLLRDNCKPT---VITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 162 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 196 (534)
.-++.+++.- |.+ ......++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999988762 222 234566777888888777443
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=0.0002 Score=48.52 Aligned_cols=67 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
..|...+++++|.++++.++..++. +...+...+.++...|++++|.+.++++++..|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4567788888888888888887543 667777788888888888888888888888888777655443
No 195
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.78 E-value=0.00044 Score=61.12 Aligned_cols=272 Identities=16% Similarity=0.100 Sum_probs=167.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHH--Hh--CCCCC-ChhhHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYGEPDV----FAYNALISGFCKANQIELANKVLDRL--RS--RGFSP-DVVTYNIMIGS 150 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~--~~--~~~~~-~~~~~~~l~~~ 150 (534)
.-+++.|+......+|+.+.+.+..+. .+|..+..+|.-.+++++|+++...= +. .|-+. ....-..|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457899999999999999999885443 45666777777888999998875431 11 11111 12233345555
Q ss_pred HHcCCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHhcCCH-------------hHHHHHHHHhcccccCChHH
Q 047017 151 LCSRGMIESAFKVFDQLL----RDNC-KPTVITYTILIQATMLEGQT-------------DKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~-------------~~a~~~~~~~~~~~~~~~~~ 212 (534)
+--.|.+++|.-...+-+ +.|- ......+..|...|...|+- +++.+.++ .
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~-----------~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE-----------N 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH-----------H
Confidence 566777777765544322 2221 11234566677777766541 12222222 2
Q ss_pred HHHHHHHH----HHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CChhhHHHHHHHHHhCCChhH
Q 047017 213 AFQFVRSL----ESRGCQ-PDVISYNMLLRTLLNMGKWEEGEKLMTEMI----SRGLE-PNVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 213 a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~ 282 (534)
|.++|..- ...|-. .--..|..|.+.|.-.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 22222211 111100 122457777888888999999987655432 22322 123467888999999999999
Q ss_pred HHHHHHHHHH----CC-CCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 283 AVDVLRAAKE----KG-LTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD-----GCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 283 a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
|.+.|+.... .| -.........+...|.-..++++|+..+.+-+.. +..-....+-++..+|...|..+.
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9999987543 22 1234456677888888888999999888765432 111234567778889999999999
Q ss_pred HHHHHHHHhh
Q 047017 353 ALEIFEKLSD 362 (534)
Q Consensus 353 A~~~~~~~~~ 362 (534)
|+...+...+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9887766543
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00076 Score=62.07 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=99.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 047017 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVT 143 (534)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 143 (534)
+.+.+......++..+....+.+.+..++-+..... ..-+.+..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 335566666777777777777888888888877654 23345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998877666777766666555554
No 197
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.72 E-value=0.045 Score=51.68 Aligned_cols=407 Identities=11% Similarity=0.017 Sum_probs=236.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+-..|..++..--...+.+.+...+..++.. .|.-...|......-.+.|..+.+.++|++....-|.+...|......
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344566666555555667777777777754 244556677777777888999999999999988778888888776665
Q ss_pred HHh-cCCHHHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hc
Q 047017 116 FCK-ANQIELANKVLDRLRSR-GFS-PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM---LE 189 (534)
Q Consensus 116 ~~~-~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 189 (534)
+.. .|+.+.....|+.+... |.. .....|...+..-...+++.....+|+++++.. ...++....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhc
Confidence 544 47888888888888765 322 245667888888888899999999999988642 112222222221 11
Q ss_pred ------CCHhHHHHHHHHhc----ccccCChHHHHHHHHHHHHcCCCCCHh--hHHHHH-------HHHHhcCCHHHHHH
Q 047017 190 ------GQTDKAMKLLDEMG----MCKKGMVGQAFQFVRSLESRGCQPDVI--SYNMLL-------RTLLNMGKWEEGEK 250 (534)
Q Consensus 190 ------g~~~~a~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~-------~~~~~~~~~~~a~~ 250 (534)
-..+++.++-.... ....+...+-.+. .+...+.+.+.. ..+.+. .++.......+...
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~--~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI--GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH--HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 12233322222211 0001111111110 011111111111 111111 12222333344444
Q ss_pred HHHHHHHCC---CC----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHH
Q 047017 251 LMTEMISRG---LE----PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323 (534)
Q Consensus 251 ~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (534)
.++.-+... ++ ++..+|...+..-...|+++.+.-+++...-- +..-...|-..+.-....|+.+.|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 444444431 22 23556777888888899999999998886542 11122344444555555699998888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH---HHHHHHHCCC
Q 047017 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALG---MISEMLSKGI 400 (534)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~ 400 (534)
...+...+..+.+...-....-..|++..|..+++.+...- |.-...-..-+....+.|+.+.+.. ++......
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-- 432 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-- 432 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--
Confidence 77766444344333333334455789999999999998863 4333444444556677788777773 33333221
Q ss_pred CCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 401 EPDEITYNSLI----S-CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 401 ~~~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
.-+..+...+. + .+.-.++.+.|..++.++.+. .+++...|..++..+...+.
T Consensus 433 ~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 11222222221 1 133467889999999999876 56677788888887766653
No 198
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.71 E-value=0.018 Score=51.68 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
..+.-+...|+...|.++-.++. .|+...|...+.+++..++|++-..+... . -++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence 33444445555555555544442 34555555555555555555544433221 1 12244555555555555
Q ss_pred CHHHHHHHHHH
Q 047017 489 WRAEAMELANA 499 (534)
Q Consensus 489 ~~~~A~~~~~~ 499 (534)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555555554
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.051 Score=52.11 Aligned_cols=214 Identities=12% Similarity=0.074 Sum_probs=115.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH----------HHHHHH
Q 047017 48 FRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA----------LISGFC 117 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------l~~~~~ 117 (534)
+..=..++|.+..+. .|.+..|..+.......-.++.|...|-+..... ....... -++.-.
T Consensus 674 ve~vgledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~--Gik~vkrl~~i~s~~~q~aei~~ 745 (1189)
T KOG2041|consen 674 VEAVGLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA--GIKLVKRLRTIHSKEQQRAEISA 745 (1189)
T ss_pred HHHhchHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc--chhHHHHhhhhhhHHHHhHhHhh
Confidence 333345566665432 6788899988887777777777777776554322 1111111 112223
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
--|.+++|.++|-.+-+++ ..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.
T Consensus 746 ~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588899988887776552 3456667778877777666532110 00112356777888887778888888
Q ss_pred HHHHHhcccccCChHHHH---HHHHHHH--HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 197 KLLDEMGMCKKGMVGQAF---QFVRSLE--SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 197 ~~~~~~~~~~~~~~~~a~---~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+.|..-.. ..+.-+++ +.|..+. ....+.+....-.+..++.+.|.-++|.+.+-+. + .| ...+
T Consensus 817 ~yY~~~~~--~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv 885 (1189)
T KOG2041|consen 817 KYYSYCGD--TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAV 885 (1189)
T ss_pred HHHHhccc--hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHH
Confidence 87765410 00000111 1111111 1123335555666666777777777766655322 1 11 1233
Q ss_pred HHHHhCCChhHHHHHHHH
Q 047017 272 SSLCRDGKTEDAVDVLRA 289 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~ 289 (534)
..|...++|.+|.++-+.
T Consensus 886 ~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566666666655443
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.70 E-value=0.00086 Score=52.05 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=94.7
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKP-DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
.+...+...+...+..|-.-+.+ .|+++ +.+.......-+...|++++|..+|..+...++.+...|..|.
T Consensus 7 ~~~~~~~~~i~~al~~G~tlk~l--------~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLa 78 (165)
T PRK15331 7 VSEERVAEMIWDAVSEGATLKDV--------HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLA 78 (165)
T ss_pred hhHHHHHHHHHHHHHCCCCHHHH--------hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34445555555555555322211 12222 2334455566677899999999999999998889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.++-..+++++|...|......+. -|.........++...|+.+.|...|+.....
T Consensus 79 a~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 79 AVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999998876653 46667777889999999999999999998874
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.69 E-value=0.0049 Score=47.96 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=48.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL 124 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 124 (534)
..+...|++++|..+|+-+.-.+ +.+..-|..|+.++-..+++++|+..|......++.|+..+.....++...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445555555555555554443 33445555555555555555555555555555544444445555555555555555
Q ss_pred HHHHHHHHHh
Q 047017 125 ANKVLDRLRS 134 (534)
Q Consensus 125 a~~~~~~~~~ 134 (534)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.60 E-value=0.046 Score=48.66 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=147.1
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 39 QFMKLIKRSF--RAGKFDESLYFIESMVANGCKPDVVMCTKLIK--KFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 39 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.|..|-..++ -.|+-..|.++-.+..+. +..|.+....++. +-.-.|+++.|.+-|+.|.........-+..|.-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 4444444444 345666666665554321 1233344443433 2344566666666666666532111122233333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHhh--HHHHHHHH---Hh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN-CKPTVIT--YTILIQAT---ML 188 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~ 188 (534)
...+.|+.+.|.++-+..-..- +.-...+...+...+..|+++.|+++.+.-.... +.++..- -..|+.+- .-
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3345566666666666555441 1124555666666666666666666666544321 1222211 11111110 01
Q ss_pred cCCHhHHHHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 189 EGQTDKAMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 189 ~g~~~~a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
..+...|...-... .+...|+..++-.+++.+-+....|+. + .+..+.+.|+. ++.-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHH
Confidence 11222222222111 445566666666666666776555543 2 22334555653 33333
Q ss_pred HHHHHC-CCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh-cCCHHHHHHHHHHHHHC
Q 047017 253 TEMISR-GLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK-DGRLDLAIEFLDYMISD 328 (534)
Q Consensus 253 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 328 (534)
++.... ..+| +......+..+-...|++..|..--+..... .|....|..+...-.. .||-.++..++.+.++.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333221 1233 5667777888888999999888877777664 5677777777766544 59999999999988875
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.60 E-value=0.00021 Score=42.49 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.++..+...|...|++++|+++|+++++..|.++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999988875
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.0014 Score=46.90 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGF-SPDVVTYNIMIGSLCSRG--------MIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
...+..+...+++...-.+|+.+++.|+ -|++.+|+.++...++.. +.-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445566667999999999999999999 889999999988776543 3456788999999999999999999
Q ss_pred HHHHHHHh
Q 047017 181 ILIQATML 188 (534)
Q Consensus 181 ~l~~~~~~ 188 (534)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987654
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00067 Score=45.96 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCh
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDV 106 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 106 (534)
..+.+.+++++|+++++.++..+ |.+...+...+.++...|++++|...|+.+.+..|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34556666666666666666654 44555566666666666666666666666665554333
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.091 Score=50.52 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH----------HHHHHcCCC
Q 047017 87 KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIM----------IGSLCSRGM 156 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~ 156 (534)
..++|.+..+. .|.+..|..++......-.++.|...|-+...- +.+....-| ...-.--|+
T Consensus 678 gledA~qfiEd-----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 678 GLEDAIQFIED-----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred chHHHHHHHhc-----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 35666666554 778899999999988888888888888776543 222111111 112233589
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+++|.++|-.+.+.. ..+..+.+.||+-...++++.
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHc
Confidence 999999998886543 245566677777777777764
No 207
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.53 E-value=0.0024 Score=45.65 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRF-RPTVISYNIIILGFCKTR--------RINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
+..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. +.-..+.+++.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554422 2344567778888878888888888777
Q ss_pred HHHHc
Q 047017 482 EGIGY 486 (534)
Q Consensus 482 ~~~~~ 486 (534)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.032 Score=46.73 Aligned_cols=134 Identities=11% Similarity=0.036 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-----HHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISY-----NIII 446 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~ 446 (534)
.+.++..+.-.+.+.-.+.++.+.++...+.++.....+++.-.+.|+.+.|..+|++..+..-..+...+ ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34445555555556666666666665544445555566666666666666666666655433222222222 2222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..+.-++++..|...+.+....+.. +....+.-+-++.-.|+..+|.+..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3344455566666666555554322 3333333344444556666666666666665553
No 209
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.0058 Score=51.74 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALI 113 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~ 113 (534)
.|...+ .+...|++..|.+.|...++..+ .....++..|+.++...|++++|..+|..+.+.. +.-+.++..+.
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444 46777889999999999888642 2346678889999999999999999999988876 45567888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVV 142 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 142 (534)
.+..+.|+.++|...|+++.+. .|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 9999999999999999999887 55543
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0052 Score=48.49 Aligned_cols=125 Identities=23% Similarity=0.311 Sum_probs=64.1
Q ss_pred hhHHHHHH---HHHhcCChhHHHHHHHHHHHC--CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 38 TQFMKLIK---RSFRAGKFDESLYFIESMVAN--GC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 38 ~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
..|..+++ .....|+.+.+...++++... |. -++... ..-.......++... ..+...
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~ 67 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALER 67 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHH
Confidence 44555543 345678999999999988763 21 111111 000111111121111 124455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhH
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITY 179 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 179 (534)
++..+...|+++.|.++++.+.... +-+...|..+|.+|...|+...|.+.|+.+.+ .|++|+..+-
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 5666666777777777777766652 33566667777777777777777777766542 3666666543
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.48 E-value=0.04 Score=52.31 Aligned_cols=232 Identities=14% Similarity=0.110 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
...+.+-+..|...|.+++|.++-- .| ....-|..|+.-....=+++-|.+.|.+. +.-.+-+-..-++++
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rV---Rdl~~L~li~EL~~~ 626 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRV---RDLRYLELISELEER 626 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHH---hccHHHHHHHHHHHH
Confidence 3444555566777787777765422 12 12234556666656666777777777664 222233444455666
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-----HHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS-----ILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
.+.|-.|+... +...+.-.|++.+|-++|.+--..+ .-...|+ ..++-+...|+.++-..+.++-.+..
T Consensus 627 k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA- 700 (1081)
T KOG1538|consen 627 KKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA- 700 (1081)
T ss_pred HhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh-
Confidence 77776666543 3344556778888887776432110 0011111 12333445555554444444322211
Q ss_pred CCCHhcHHHHHHHHHhcCCHHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC
Q 047017 296 TPDAYSYDPLISAYCKDGRLDLAIEFLD------YMISDGC---LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCP 366 (534)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 366 (534)
-+..--......+...|+.++|..+.- -+.+.+. ..+..+...+...+.+...+.-|-++|.++-..
T Consensus 701 -r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--- 776 (1081)
T KOG1538|consen 701 -RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--- 776 (1081)
T ss_pred -hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---
Confidence 011111233445556677666665431 1111111 123455555666666667777777787776442
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 367 PNVSSYNTMFSALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 397 (534)
..++..+...++|.+|..+-+...+
T Consensus 777 ------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 ------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred ------HHHhhheeecccchHhHhhhhhCcc
Confidence 3566677788888888887776554
No 212
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.47 E-value=0.0002 Score=38.75 Aligned_cols=29 Identities=38% Similarity=0.732 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665544
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.05 Score=45.66 Aligned_cols=131 Identities=12% Similarity=0.050 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-----hHHHHH
Q 047017 302 YDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-----SYNTMF 376 (534)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~ 376 (534)
.+.++..+...+.+.-....+.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+.. ......
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 334444555555555555555555555444455555556666666666666666665443322122222 222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
..|.-.+++..|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555666666665555432 223333333333344456666666666666654
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.42 E-value=0.094 Score=47.80 Aligned_cols=427 Identities=15% Similarity=0.153 Sum_probs=236.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhH------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHH
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAY------NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG--SLC 152 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 152 (534)
.+-+++++.+|.++|.++.+....++..+ +.++.+|. .++.+.....+....+. .| ...|..+.. .+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 35678999999999999987764443333 35566664 45666666666666655 33 333444443 345
Q ss_pred cCCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHH
Q 047017 153 SRGMIESAFKVFDQLLRD--NCKP------------TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVR 218 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~ 218 (534)
+.+.+.+|.+.+...... +..+ +...=+..+..+...|++.++..+++++ +.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i--------------~~ 156 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRI--------------IE 156 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHH--------------HH
Confidence 788999999988877654 2111 1112244567778889999999998887 34
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHhC
Q 047017 219 SLESRGCQPDVISYNMLLRTLLNMGK---------------WEEGEKLMTEMISR------GLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ 277 (534)
.+.+....-+..+|+.++-.+.+.-- ++.+.-..+++... .+.|.......++....-.
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~ 236 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV 236 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence 44444455677777775544433211 12222222333221 1223333333333332221
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHh-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhCCCH
Q 047017 278 --GKTEDAVDVLRAAKEKGLTPDAY-SYDPLISAYCKDGRLDLAIEFLDYMISDGCL----PDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 278 --~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 350 (534)
....--.++++.....-+.|+.. ....+...+.. +.+++..+-+.+....+. .=..++..++....+.++.
T Consensus 237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T 314 (549)
T PF07079_consen 237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT 314 (549)
T ss_pred CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11222233333333333344432 22333333333 455555555444432111 1235677788888899999
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHH-------HHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHh
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTM-------FSALW----SSGDKIRALGMISEMLSKGIEPDEITYNSLIS---CLCR 416 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~ 416 (534)
..|.+.+.-+.-. .|+...-..+ ....+ ..-+...-+.+|......++. .......++. -+.+
T Consensus 315 ~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 315 EEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHh
Confidence 9999988877654 3333221111 11111 111233445566666654332 1222233333 2445
Q ss_pred cCC-HHHHHHHHHHHHhCCCCCChhhHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCC----HHHHHHHHH--
Q 047017 417 DGM-VDEAVGLLVDMESTRFRPTVISYNIII----LGFCK---TRRINESIEVLAAMFEKGCKPN----ETTYVLLIE-- 482 (534)
Q Consensus 417 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~-- 482 (534)
.|. -++|.++++.+.+-. .-|...-+.+. .+|.+ ...+.+-+.+-+-+.+.|++|- ...-+.|.+
T Consensus 392 ~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred cCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 555 788999999887641 22333333221 22222 2223333444334445677763 333344433
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhc
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
-+...|++.++.-+-.-+.+..| ++.++..+|-++.-.++|+||-+.+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35578999999998888888999 99999999999999999999988764
No 215
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00026 Score=38.27 Aligned_cols=28 Identities=39% Similarity=0.807 Sum_probs=13.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
+|+.++.+|++.|++++|.+++++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.011 Score=50.22 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-CHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFR--PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-P-NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l 480 (534)
..|+.-+.. ...|++..|...|...++..+. -....+-+|..++...|++++|..+|..+.+.-+. | -+..+..|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 356665554 4678899999999999876321 12445667899999999999999999999885322 1 35788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
..+..+.|+.++|...|+++++..|..+.+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999988865543
No 217
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0052 Score=54.89 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.++..+..+|.+.+++..|+....+.+..+. +|...+-.=.++|...|+++.|+..|+++++..|.+..+...|.++-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455666777777788888877777777653 356666666777777788888888888888888877777777777766
Q ss_pred hHHHHHHh
Q 047017 520 LLDVYKEI 527 (534)
Q Consensus 520 ~~~~~~~~ 527 (534)
+...+.+-
T Consensus 337 k~~~~~~k 344 (397)
T KOG0543|consen 337 KIREYEEK 344 (397)
T ss_pred HHHHHHHH
Confidence 65555443
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.34 E-value=0.1 Score=46.55 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=171.7
Q ss_pred CHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRT--LLNMGKWEEGEKLMTEMISRGLEPNVVT--YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
|......++.+ -.-.|+++.|.+-|+.|... |.... ...|.-.-.+.|+.+.|..+-+..-..- +.-.....
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 44444444443 45589999999999999863 22221 2223333457899999999988877653 22456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHH--HHHHHHH--HH-hCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHH
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGC-LPDIVN--YNTILAA--FC-KNGNADQALEIFEKLSDVGCPPNVS-SYNTMF 376 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~--~~~l~~~--~~-~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 376 (534)
..+...+..|+++.|+++++.-....+ .++..- -..++.+ -. -.-+...|...-.+..+. .|+.. .-....
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHH
Confidence 889999999999999999987765422 223211 1112211 11 123466677666666664 34433 344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRP-TVISYNIIILGFCKTRR 454 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 454 (534)
.++.+.|+..++-.+++.+-+.. |.+.+...+ .+.+.|+ .+..-+++.... .++| +......+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 78899999999999999998864 444443332 2335554 444444444321 1344 45666677888889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHc
Q 047017 455 INESIEVLAAMFEKGCKPNETTYVLLIEGIG-YGGWRAEAMELANALVSM 503 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 503 (534)
+..|..--+..... .|....|..+.+.-. ..|+-.+++.++-+.++.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99988877777654 678888888877655 559999999999999874
No 219
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.32 E-value=0.16 Score=48.22 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=105.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 56 SLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 56 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...+++..... ..+...|..++.---.....+.+...+..++..-|.-...|...+..-.+.|..+.+.++|++.+..
T Consensus 31 ~~~~we~~~~~--~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSND--SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccc--hhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444332 2344555555543333334466677777777766777778889999999999999999999998764
Q ss_pred CCCCChhhHHHHHHHH-HcCCCHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 136 GFSPDVVTYNIMIGSL-CSRGMIESAFKVFDQLLRD-NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
++.....|......+ ...|+.+.....|+.+... |. -.....|...+..-..++++.....+++++.......+..
T Consensus 109 -ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 109 -IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred -hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 455677777665544 3568888888999988764 32 2234567777777777888888888888773333333333
Q ss_pred HHHHHHH
Q 047017 213 AFQFVRS 219 (534)
Q Consensus 213 a~~~~~~ 219 (534)
-+.-|.+
T Consensus 188 ~f~~f~~ 194 (577)
T KOG1258|consen 188 HFDRFKQ 194 (577)
T ss_pred HHHHHHH
Confidence 3333333
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.12 Score=46.89 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=45.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDG---CLPDIVNYNTILAAFCK---NGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
+...++-+|....+++..+++.+.+.... +......-...+-++.+ .|+.++|+.++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777777777777777766541 11122233334445555 6777777777777444444667777766
Q ss_pred HHHHH
Q 047017 375 MFSAL 379 (534)
Q Consensus 375 l~~~~ 379 (534)
++..|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66655
No 221
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.31 E-value=0.013 Score=44.63 Aligned_cols=84 Identities=10% Similarity=0.202 Sum_probs=62.5
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh-hHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF-AYN 110 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 110 (534)
+.++..+..-....++.|++.+|.+.|+.+..+-+ +....+...++.++.+.+++++|...++...+.+|.++. -|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 45667777788888999999999999999887531 334556778888999999999999999999998854443 243
Q ss_pred HHHHHHH
Q 047017 111 ALISGFC 117 (534)
Q Consensus 111 ~l~~~~~ 117 (534)
..+.+++
T Consensus 87 ~Y~~gL~ 93 (142)
T PF13512_consen 87 YYMRGLS 93 (142)
T ss_pred HHHHHHH
Confidence 4444433
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.30 E-value=0.0061 Score=55.82 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=53.8
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
-+...+..+...|...|++++|+..|+++++.+ +.+. .+|..+..+|...|+.++|+..++.+.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 366778888889999999999999999988875 3333 34888899999999999999999888875
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.13 Score=46.77 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSRG---FSPDVVTYNIMIGSLCS---RGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
++.+...++-+|....+++..+++.+.+.... +......-...+-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 45556677778999999999999999988651 11122223344555666 8999999999999666555888889
Q ss_pred HHHHHHHHH
Q 047017 179 YTILIQATM 187 (534)
Q Consensus 179 ~~~l~~~~~ 187 (534)
+..+++.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 988888774
No 224
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0049 Score=50.17 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR----------------GMIESAFKVFDQLLRDNCKPTVITYTILI 183 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 183 (534)
|..+-....+..|.+.|+..|..+|+.|+.++=+. .+-+-|++++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45555556666677777777777777777665431 23467899999999999999999999999
Q ss_pred HHHHhcC
Q 047017 184 QATMLEG 190 (534)
Q Consensus 184 ~~~~~~g 190 (534)
+.+.+.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 9885544
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.078 Score=45.59 Aligned_cols=121 Identities=16% Similarity=0.103 Sum_probs=65.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (534)
.......|++.+|..+|.......+.+..+-..++++|...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777777777776777777777777778888777777777654311111111111222333333333
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+...+-.++-.. |.|...-..+...+...|+.+.|.+.+-.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333332222221 33445555555555555555555554443
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.17 E-value=0.016 Score=44.06 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCchH
Q 047017 490 RAEAMELANALVSMHAISRD 509 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~ 509 (534)
..+|...|+++++..|.++-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55788888888888887763
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.16 E-value=0.019 Score=46.90 Aligned_cols=121 Identities=15% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 366 PPNVSSYNTMFSALWSS-----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
..+..+|..++..+... |..+=....+..|.+-|+.-|..+|+.|++++-+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 44667777777776543 4555555666677777777777777777777654 3221 1111111110
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHcCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR----AEAMELANALVSMHA 505 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~ 505 (534)
- --.+-+-|++++++|...|+-||.+++..+++.+.+.+.. ..-.-++-+....+|
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP 173 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINP 173 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCC
Confidence 0 0123355778888888888888888888888887776632 223334445555444
No 228
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.29 Score=47.74 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
+.+.-+.-+...|+..+|.++-.++. -||...|..-+.+++..+++++-.++-+... .+.-|.-.+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44455556667788888887776664 5677777777788888888877666555442 1345666777888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
+.|+.+||.+++-+..... .....|...|.+.+|.++.
T Consensus 756 ~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 8888888888876653221 3466677778888877764
No 229
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.061 Score=44.62 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=10.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLRAA 290 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~ 290 (534)
..+-.+.-..|+..|...++.-
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcch
Confidence 3333444445555555555543
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.33 Score=48.04 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.++..+....+.+.+..+.+..-+. ++..|..++..+++.+..+.-.+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3455566667777777666555432 66777778888877776555544444443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.016 Score=53.23 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=60.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.+...++.++.+|...|++++|+..|+...+.+|.+.. +|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567888999999999999999999999999999877774 5999999999999999999999999875
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.09 E-value=0.0016 Score=44.71 Aligned_cols=63 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEK----GCK-PN-ETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
.+++.+...|...|++++|+..++++++. |.. |+ ..++..++.++...|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666542 111 11 34556666777777777777777777665
No 233
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.06 E-value=0.22 Score=44.88 Aligned_cols=23 Identities=9% Similarity=0.423 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIE 61 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~ 61 (534)
.|..+.......|+..-|..+++
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~ 24 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE 24 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH
Confidence 46778888889999988888764
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.04 E-value=0.16 Score=42.94 Aligned_cols=64 Identities=19% Similarity=0.065 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKP---NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.+.+.|.+.|.+-.|..-++.|++. .+- ....+..+..+|...|-.++|.+.-+-+-.-.|.++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3556788888888898888888885 222 234555667788888888888877665555555554
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.01 E-value=0.00038 Score=38.35 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=29.2
Q ss_pred HHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 497 ANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
|+++++.+|.++.++..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999998863
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.093 Score=43.59 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|.....+|...++|++|...+.++.+. ...+...| ...++ ++.|..+.+++.+. +.-...+......|.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAAKa------yEqaamLake~~kl-sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAAKA------YEQAAMLAKELSKL-SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHHHH------HHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Confidence 34555556666666666666666655431 11122211 12222 33444444444432 222334455555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHHhcCCH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---N--CKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..|.++.|-..+++.-+. ...-++++|+++|++.... + ...-...+....+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666666655554432 2334455555555554321 1 011112333444455555555
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHH
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRG---LEPNVVTYS 268 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 268 (534)
++|-..+.+- ..+...... -++. ..|...+-.+.-..++..|...++.--+.+ -.-+..+..
T Consensus 167 ~Eaa~a~lKe-----------~~~~~~~~~---y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 167 TEAATAFLKE-----------GVAADKCDA---YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred hHHHHHHHHh-----------hhHHHHHhh---cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 5554444332 001111111 1122 335555666777789999999998854432 122456777
Q ss_pred HHHHHHHhCCChhHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLR 288 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~ 288 (534)
.|+.+| ..||.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 888876 6788888777663
No 237
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.013 Score=52.45 Aligned_cols=124 Identities=13% Similarity=0.096 Sum_probs=85.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC-----CCC---------CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 44 IKRSFRAGKFDESLYFIESMVAN-----GCK---------PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
...+++.|+|..|...|++++.. +.+ .-...+..+..++.+.+++..|++..+..+..++.|..++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 34688999999999999997642 111 1122456677778888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHcCCCH-HHHHHHHHHHHh
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVT-YNIMIGSLCSRGMI-ESAFKVFDQLLR 169 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~-~~a~~~~~~~~~ 169 (534)
..-..++...|+++.|...|+++.+. .|+... -+.++.+-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888888888876 554433 33444443333333 333566666653
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.093 Score=45.14 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=102.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP-DVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 123 (534)
......|++.+|...|..+.+.. +.+..+...++.++...|+.+.|..++..+...... .......-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35678899999999999999876 556788889999999999999999999998765422 2222233445555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCC
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC-KPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 191 (534)
+..++-.++... +-|...-..+...+...|+.+.|.+.+-.+++.+. -.+...-..++..+...|.
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 555555555443 33777777889999999999999988877776521 3344556666666655553
No 239
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.90 E-value=0.36 Score=44.84 Aligned_cols=150 Identities=11% Similarity=0.083 Sum_probs=72.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhH
Q 047017 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP---DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISY 442 (534)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 442 (534)
...++..++..+.+.|.++.|...+..+...+... .+......+......|+..+|...++...+.....+ ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34456666666666677766666666665532111 223333344445556666666666666655211111 0000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG------GWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
..+...... ..+..... .........-..++..+..-+... +..+++...|+.+.+..|....++..++.
T Consensus 225 ~~~~~~~~~--~~~~~~~~--~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISST--NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHhhcccc--cccccccc--chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 011000000 00000000 000000000012233333333344 78889999999999999988888888887
Q ss_pred hcchH
Q 047017 517 TFPLL 521 (534)
Q Consensus 517 ~~~~~ 521 (534)
.+...
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77653
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.89 E-value=0.075 Score=50.98 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh------hHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCC
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVV------MCTKLIKKFFQ----ERKSNKAVRVMEILEKYGEPD 105 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 105 (534)
=|..+..++....-.||-+.+++++.+..+.+.-..+. .|+.++..+.. ....+.|.++++.+.++.|.+
T Consensus 187 LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s 266 (468)
T PF10300_consen 187 LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS 266 (468)
T ss_pred CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc
Confidence 45556677777778899999999999987643111222 23333333332 456788999999999988877
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRG--F-SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
......-.+.+...|++++|++.|+...... . +.....+-.++.++.-.++|++|...|..+.+.+ .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 7777777888889999999999999765321 0 1133445567778888999999999999999864 3333344333
Q ss_pred -HHHHHhcCCH-------hHHHHHHHHh
Q 047017 183 -IQATMLEGQT-------DKAMKLLDEM 202 (534)
Q Consensus 183 -~~~~~~~g~~-------~~a~~~~~~~ 202 (534)
+.++...|+. ++|.++|.++
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3345566777 6666666554
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=96.88 E-value=0.086 Score=48.72 Aligned_cols=146 Identities=12% Similarity=0.034 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHh---hCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047017 350 ADQALEIFEKLS---DVGCPPNVSSYNTMFSALWSS---------GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD 417 (534)
Q Consensus 350 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 417 (534)
.+.|..+|.++. ... |.....|..+..++... .+..+|.++.+...+.+ +.|......+..+....
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345666677766 322 22344555444443221 12345555566666553 34555555666655666
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 047017 418 GMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEAME 495 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 495 (534)
++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++.++..+.-- ..+....+..|+.. ..++|++
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 6677777777777664 333 44555555556667777777777777666532211 12222233344444 3566666
Q ss_pred HHHHH
Q 047017 496 LANAL 500 (534)
Q Consensus 496 ~~~~~ 500 (534)
+|-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 55443
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.79 E-value=0.3 Score=42.22 Aligned_cols=228 Identities=20% Similarity=0.076 Sum_probs=162.2
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKGLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISD-GCLPDIVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 354 (534)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666667776666653221 2456677788888899999999988887752 23445667777888888888999999
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFS-ALWSSGDKIRALGMISEMLSKGI--EPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
..+......... +......... .+...++++.+...+.+...... ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPD-PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 999988875422 2233333333 78899999999999999866321 1233444444455677889999999999988
Q ss_pred hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 432 STRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..........+..+...+...++++.|...+......... ....+..+...+...|..+++...+.+.....+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7522213667778888888999999999999999886322 2445555555555777899999999999998876
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.74 E-value=0.0046 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+..+...+...|++++|+++|+.+.+..|.+..++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3444444444444444444444444444444444443
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.73 E-value=0.067 Score=39.51 Aligned_cols=95 Identities=17% Similarity=0.056 Sum_probs=69.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHccC
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK-GCKPNETT---YVLLIEGIGYGG 488 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~---~~~l~~~~~~~g 488 (534)
+....|+.+.|++.|.+.+.. .+.....||.-..++.-+|+.++|++=++++++. |.+ .... |..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456788899999999888775 2346778888888888889999999888888874 323 3322 223334566788
Q ss_pred CHHHHHHHHHHHHHcCCCchH
Q 047017 489 WRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+.|+.-|+.+.++|..-..
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHH
Confidence 999999999998888765443
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=96.73 E-value=0.17 Score=46.91 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=102.0
Q ss_pred ChhHHHHHHHHHH---HCCCCCCHhhHHHHHHHHHh---------cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 52 KFDESLYFIESMV---ANGCKPDVVMCTKLIKKFFQ---------ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 52 ~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
..+.|+.+|+++. ..+ |....+|-.+..++.. .....+|.++.+...+.++.|+.+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4567889999998 432 3335566555544432 23455788889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT-VITYTILIQATMLEGQTDKAMK 197 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 197 (534)
++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+.+...- .......+..|+. ...+++++
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 9999999999999987 454 56677777777889999999999999877642111 1222223334443 34566666
Q ss_pred HHH
Q 047017 198 LLD 200 (534)
Q Consensus 198 ~~~ 200 (534)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 554
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.84 Score=45.37 Aligned_cols=170 Identities=9% Similarity=0.080 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..-+..+.+...++-|..+.+.-......-.......+..+.+.|++++|...|-+-... +.| ..++.-|....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 345556666677777776655432211112234555566667788999888887776533 122 13444555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccc-cCChHHHHHHHHHHHH--------cCCC
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCK-KGMVGQAFQFVRSLES--------RGCQ 226 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~--------~~~~ 226 (534)
+..+--.+++.+.+.|. .+...-..|+.+|.+.++.++-.+..+...-.. --+.+.|++++++..- ....
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 66666677777777774 445556778888888888888777766542000 1134555555433110 0011
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 255 (534)
.+...... .+-..+++++|++.++.+
T Consensus 491 ~he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 KHEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred cCHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 11222222 233456777777777654
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.65 Score=44.61 Aligned_cols=206 Identities=16% Similarity=0.193 Sum_probs=104.7
Q ss_pred HHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----HHHHHHHcCCCHHHHHHHHHHHH
Q 047017 95 MEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYN-----IMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
++++.+++. |+.. .++..++-.|.+.+|.++|.+--..+ .-...|+ -+..-+...|..++-..+..+-.
T Consensus 623 L~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 623 LEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred HHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 445555552 4332 34455666777777777776533220 0111111 12344455555555444444322
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047017 169 RDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEG 248 (534)
Q Consensus 169 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (534)
+. ..+..--...+..+...|+.++|..+.-+ .|-.+-++++-+++.. .+..+...+..-+.+...+.-|
T Consensus 698 ~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d-----~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 698 DW--ARNIKEPKAAAEMLISAGEHVKAIEICGD-----HGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HH--hhhcCCcHHHHHHhhcccchhhhhhhhhc-----ccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 21 11111112345566677888888776543 2333334444333322 2344555555555666777778
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh-----------cHHHHHHHHHhcCCHHH
Q 047017 249 EKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY-----------SYDPLISAYCKDGRLDL 317 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~ 317 (534)
-++|..|-.. ..++......++|.+|..+-+...+. .|+.. -|...-.+|.+.|+..+
T Consensus 767 aeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 767 AEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 8888776432 34566777888888888777665442 22221 12222344555566666
Q ss_pred HHHHHHHHHH
Q 047017 318 AIEFLDYMIS 327 (534)
Q Consensus 318 a~~~~~~~~~ 327 (534)
|..+++++..
T Consensus 836 A~~vLeQLtn 845 (1081)
T KOG1538|consen 836 AVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHhhh
Confidence 6666555543
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.59 E-value=0.032 Score=44.02 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=23.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
++..+...|+++.|..+.+.+.... |.+...+..++.+|...|+...|...|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444432 334444444444444444444444444443
No 249
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.56 E-value=0.0066 Score=41.66 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 047017 109 YNALISGFCKANQIELANKVLDR 131 (534)
Q Consensus 109 ~~~l~~~~~~~g~~~~a~~~~~~ 131 (534)
+..+..++...|++++|.+.+++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444444444444444443
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.52 E-value=0.71 Score=43.13 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..++....+..+.+.-+++-.++++.+|....+|..|.+- ......++.++|++..+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 4556666778888888888888888776666777665543 234567788888877654
No 251
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.49 E-value=0.7 Score=42.73 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=81.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.-|......|+.-.|-+-+...+++- +.++.........+...|.++.+...+......-.....+...+++...+.|+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 34555566777777766665555542 44444444445556677888888887776665545555667777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
++.|...-+.|....+. +..............|-++++.-.++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888888877766443 33333333333345566777877777777655
No 252
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.48 E-value=1.4 Score=45.89 Aligned_cols=312 Identities=17% Similarity=0.178 Sum_probs=131.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcC----CCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYG----EPDVFAYNALISGFCKA-NQIELANKVLDRLRSRGFSPDVV--TYNIMIGSLC 152 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (534)
.-++..+++.+|..+.++..-.- ..++..|..-+.++.+. ++.+-...++-.+...++.-+.+ ++.+-...|.
T Consensus 685 r~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~ 764 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYM 764 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEE
Confidence 34455566666655554432211 23445555555555554 44444444444444332111110 0111111222
Q ss_pred cCC----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHhcccc-cCChHHHHHHHHHHHHcCC
Q 047017 153 SRG----MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG--QTDKAMKLLDEMGMCK-KGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 153 ~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~ 225 (534)
... ......+......... .|+ .....++..|.+.+ .++.++....+..... ....++|++.+--+..
T Consensus 765 ~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvd--- 839 (1265)
T KOG1920|consen 765 SRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVD--- 839 (1265)
T ss_pred eccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcc---
Confidence 221 2233333333333333 444 44456777777776 6667766666553211 3334444444433221
Q ss_pred CCCHhhHHHHHH----------HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 226 QPDVISYNMLLR----------TLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 226 ~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
....|+..+. +-..+.|+.+=+-+++++.+. +++..-|. |. ...++++.|+..+..+.
T Consensus 840 --vn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~---- 907 (1265)
T KOG1920|consen 840 --VNELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG---- 907 (1265)
T ss_pred --HHHHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC----
Confidence 1222332222 122233444444444433321 11111110 11 11244555555444332
Q ss_pred CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhh
Q 047017 296 TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIV----NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSS 371 (534)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 371 (534)
...|....+.-.+.|-++.|+.++. |+.. .|...+..+.....+++|.-.|+..-+
T Consensus 908 ---~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--------- 967 (1265)
T KOG1920|consen 908 ---ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--------- 967 (1265)
T ss_pred ---ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------
Confidence 2233334444445555555555442 2332 233334444445555565555554422
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEI--TYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
....+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...++.-+|-+++.+..
T Consensus 968 lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 968 LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 123455566666666666666554321 1111 11344445555555555555555443
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.47 E-value=0.07 Score=40.29 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=39.3
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAMFE-KGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 485 (534)
...|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|++=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567788888888888888888888888888776 466667788877775433
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.42 E-value=0.077 Score=50.08 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=50.0
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
..++...+. .+..+-.|+++++.++.+.-.-. ..........++..+.+.|..+.|+.+...-. .-
T Consensus 259 ~~ld~~~~~--fk~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~r 324 (443)
T PF04053_consen 259 YELDLSELE--FKTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDPD-----------HR 324 (443)
T ss_dssp EE--HHHHH--HHHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HH
T ss_pred EEECHHHHH--HHHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HH
Confidence 334444443 45566678888877776521111 01224456677777777787777776543211 11
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.+...+.|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+
T Consensus 325 FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 23333445555544433221 1344455555555555555555555444
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.11 Score=45.23 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=53.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV----VTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 158 (534)
...|++-+|-..++++++..|.|..++.-.=.++.-.|+...-...++++... -.+|. +.-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34455555555555555544555544444444555555554444444444432 01111 11112222334455555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+|++.-++..+.+ +.|.....++...+-..|++.++.+...+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555444 44444444444444445555555444433
No 256
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.15 Score=41.04 Aligned_cols=109 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
-+...|++++|..-|..++..- ++. ...|..-..++.+.+.++.|++-..++++.++. ....+..-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3456777777777777776641 221 233444455677778888888888887776533 233333445567777
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
.++++|++-|+++.+..|....+....+++-...+.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 888888888888888888877777777666655443
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.41 Score=42.46 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHH
Q 047017 239 LLNMGKWEEGEKLMTEMISRG--LEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
+....+.++|+..+...+.+- ...-..++..+..+..+.|.+++++
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 344555666666655554431 0001223444444445555544443
No 258
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.30 E-value=0.17 Score=37.46 Aligned_cols=93 Identities=11% Similarity=-0.072 Sum_probs=62.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV---VTYNIMIGSLCSRG 155 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 155 (534)
..++...|+.+.|++.|...+..-|....+|+.-..++.-+|+.++|++-+++..+..-+.+. ..|..-...|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345567777788888877777776777777877777777778888887777777765222222 22333345566677
Q ss_pred CHHHHHHHHHHHHhCC
Q 047017 156 MIESAFKVFDQLLRDN 171 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~ 171 (534)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777777666
No 259
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.29 E-value=0.41 Score=46.05 Aligned_cols=130 Identities=18% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHH------H----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAY------C----KDGRLDLAIEFLDYMISDGCLPDIVN 336 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (534)
+..++....-.||-+.+++.+....+.+-.-.+..--.++.-| + ...+.+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4455555556677777777776655532111111111111111 0 123455566666666654 233333
Q ss_pred H-HHHHHHHHhCCCHHHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 337 Y-NTILAAFCKNGNADQALEIFEKLSDVGC---PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 337 ~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
| -.-.+.+...|+.++|++.|+....... ......+--++-.+....+|++|...+..+.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3 2334455556666666666665442110 111122333444455556666666666666653
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.97 Score=42.27 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFR-PTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIG 485 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 485 (534)
..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+--+...+.+ ...|+..+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34455555666666666666666543211 1233445566666666666666666666533221111 222332221111
Q ss_pred ccCC---------------HHHHHHHHHHHHHcCCCchH
Q 047017 486 YGGW---------------RAEAMELANALVSMHAISRD 509 (534)
Q Consensus 486 ~~g~---------------~~~A~~~~~~~~~~~~~~~~ 509 (534)
..|+ ...|.+.+.++++.+|..|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 1111 23466788888888886554
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.20 E-value=0.66 Score=39.39 Aligned_cols=57 Identities=7% Similarity=0.060 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.+.+.|.+.|.+-.|..-+++|.+. .+.+ ...+-.+..+|...|-.++|.+.-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4556788889999999989888876 3323 3345566778888888888877654443
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=1.4 Score=43.22 Aligned_cols=338 Identities=16% Similarity=0.104 Sum_probs=164.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI--ESAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
..++.-+...+.+..|+++-..+...-.. +...|......+.+..+. +++.+..++=..... .....|..++.-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 34456666778888888887776532111 256666666666665332 233333332222211 33456777777777
Q ss_pred hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047017 188 LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY 267 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 267 (534)
..|+.+-|..+++.-. ..... ..++ .+..-+...+.-+...|+.+-...++-.+...- +...+
T Consensus 519 ~~GR~~LA~kLle~E~----~~~~q-V~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 519 QEGRFELARKLLELEP----RSGEQ-VPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred hcCcHHHHHHHHhcCC----Cccch-hHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 8888888888776420 00000 0000 011112222333344444444444443333210 11111
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHH-HHC-CCCCCHHHHHHHHHHHH
Q 047017 268 SILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYM-ISD-GCLPDIVNYNTILAAFC 345 (534)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~ 345 (534)
.....+...|..+|.+..++. +.. .+-..|....+....-.+.-+- ... .+.+-..........+.
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 111223444555555554421 111 1122222222222211111110 000 01111222333344444
Q ss_pred hCCCHH----------HHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 346 KNGNAD----------QALEIFEKLSDV-GCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 346 ~~~~~~----------~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
+..... .-+.+.+.+... |..-..-+.+.-+.-+...|+..+|.++-.+.. -||-..|-.-+.++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aL 725 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTAL 725 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHH
Confidence 433311 112222222211 222233345555666777788888877776654 35777777777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
+..+++++-+++-+... .+.-|...+.+|.+.|+.++|.+++.+.- +.. ....+|.+.|++.+|.
T Consensus 726 a~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 726 ADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAA 790 (829)
T ss_pred HhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHH
Confidence 88888877666554432 25566777888888888888888887662 111 4667778888888877
Q ss_pred HHH
Q 047017 495 ELA 497 (534)
Q Consensus 495 ~~~ 497 (534)
+.-
T Consensus 791 d~A 793 (829)
T KOG2280|consen 791 DLA 793 (829)
T ss_pred HHH
Confidence 654
No 263
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.19 Score=43.94 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=71.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 118 KANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---NCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
..|+..+|...++++++. .+.|...+...=.+|.-+|+...-...++++... ++|-.......+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456666666666666654 2345556665566666677776666666666543 112122222333444556677777
Q ss_pred HHHHHHHh----------------cccccCChHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 195 AMKLLDEM----------------GMCKKGMVGQAFQFVRSLESRGCQPD---VISYNMLLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 195 a~~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 255 (534)
|.+.-++. .....++..++.+.+.+-...--..+ ..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 77766655 22334455555554433221110000 111223333455567777777777653
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.31 Score=46.13 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=20.8
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
.+.|+++.|.++.++ ..+...|..|.......|+++-|.+.|.+
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555444332 22344555555555555555555555544
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.05 E-value=0.85 Score=39.30 Aligned_cols=223 Identities=20% Similarity=0.182 Sum_probs=160.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 242 MGKWEEGEKLMTEMISRGLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEK-GLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 242 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666777777766653221 3567777888888999999999998887752 23345566777777888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHhhCCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 320 EFLDYMISDGCLPDIVNYNTILA-AFCKNGNADQALEIFEKLSDVGCP---PNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
..+.........+ ......... .+...|+++.|...+.+..... + .....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988764332 222333333 7889999999999999986632 2 23344444455567788999999999999
Q ss_pred HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 396 LSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 396 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
.... +. ....+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.+.....
T Consensus 194 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8762 33 4677788888888999999999999998875 333 3445555555557778999999999888763
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.05 E-value=0.47 Score=42.12 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=137.7
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHH----HHHHHcC--CCChhhHHHHHHHHHh
Q 047017 47 SFRAGKFDESLYFIESMVANG--CKPDVVMCTKLIKKFFQERKSNKAVRVM----EILEKYG--EPDVFAYNALISGFCK 118 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~--~~~~~~~~~l~~~~~~ 118 (534)
+....+.++|+..|.+.+.+- .......+..+..+....|.+++++..- ..+.... ..--.+|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889998888876531 0112234455667788888888776532 2222211 1223456667777777
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---C--CCHhhHHHHHHHHHhc
Q 047017 119 ANQIELANKVLDRLRSR-GFSPD---VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC---K--PTVITYTILIQATMLE 189 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 189 (534)
.-++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+... . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 77777777766655443 22221 22334566777888889999999999876421 1 1234688899999999
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-----DVISYNMLLRTLLNMGKWEEGEKLMTEMIS----RGL 260 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~ 260 (534)
.|+++|.-...+. ..+. ...++.. .......|..++...|...+|.+.-++..+ .|-
T Consensus 176 ~D~~Kal~f~~kA-----------~~lv---~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 176 KDYEKALFFPCKA-----------AELV---NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred HhhhHHhhhhHhH-----------HHHH---HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 9999988776654 2222 2222111 111233344556667777777766665543 332
Q ss_pred CC-ChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 261 EP-NVVTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 261 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
.+ -......+...|...|+.+.|..-|+++.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 12334566777888888888877776654
No 267
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.99 E-value=1.9 Score=42.75 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHCC
Q 047017 384 DKIRALGMISEMLSKG 399 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~ 399 (534)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 4455555555555544
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.96 E-value=1.1 Score=39.83 Aligned_cols=164 Identities=13% Similarity=0.082 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhCCCHH---HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNAD---QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|... +.-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 35666777777766654 445555555443 2444556656667777778888888888888875 221223333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCChh-hHHH-HHH---HHHhcCC------hHHHHHHHHHHHH-cCCCCCHHH
Q 047017 412 SCL---CRDGMVDEAVGLLVDMESTRFRPTVI-SYNI-IIL---GFCKTRR------INESIEVLAAMFE-KGCKPNETT 476 (534)
Q Consensus 412 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~A~~~~~~~~~-~~~~~~~~~ 476 (534)
..+ .. .....+...+..+....+.|... .... ++. .....++ .+...+++....+ .+.+.+..+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 33455666665555443444432 1111 111 1112211 3333344443322 122223333
Q ss_pred H---HHH----HHHHHccCCHHHHHHHHHHHH
Q 047017 477 Y---VLL----IEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 477 ~---~~l----~~~~~~~g~~~~A~~~~~~~~ 501 (534)
- ..+ +..+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2 223 334567889999999998654
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.055 Score=43.36 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPN----ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.-+...|++++|..-|..++..-+... ...|..-..++.+.+.++.|+.-..++++++|....++.+.+.+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 346788999999999999998532212 2344455567889999999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q 047017 523 VYKEISHLA 531 (534)
Q Consensus 523 ~~~~~~~~~ 531 (534)
+|+++..-+
T Consensus 183 k~eealeDy 191 (271)
T KOG4234|consen 183 KYEEALEDY 191 (271)
T ss_pred hHHHHHHHH
Confidence 999887543
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.80 E-value=3 Score=43.58 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHH
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI--SYNIIILGF 449 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~ 449 (534)
|...+..+.....+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33444445556677777766665432 124466778888888888888776431 1222 124677778
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 450 CKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
...+++-+|-+++.+..+. | . ..+..+++...|++|.+.....-
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~-~----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---P-E----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---H-H----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 8889988888888777542 1 1 12233444556666666554443
No 271
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.79 E-value=0.67 Score=36.09 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+......++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3333344444444444444444433 233444444444444332 2222333321 1122223334445555555
Q ss_pred hHHHHHHHHHH
Q 047017 455 INESIEVLAAM 465 (534)
Q Consensus 455 ~~~A~~~~~~~ 465 (534)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.78 E-value=0.89 Score=37.35 Aligned_cols=75 Identities=13% Similarity=-0.033 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 94 VMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
-|.......|.-+.+|+.+.-.+...|+++.|.+.|+...+. .|. ..+...-.-.+.-.|++.-|.+-+...-+.
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 334444444555556666666666666666666666666554 221 111111112223345555555555444443
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.75 Score=36.23 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=85.5
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-h--HHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV-T--YNI 146 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~--~~~ 146 (534)
...|...++ +.+.++.++|+.-|..+.+.+ .-..-+...........|+...|...|+++-...-.|-+. . ..-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444444 456778888888888888877 2333444555666777888888999998887652222221 1 111
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
-...+...|.++......+-+...+-+.-...-..|.-+-.+.|++.+|.++|..+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 22345678888888888777766554444555667777777888888888888876
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.72 E-value=0.033 Score=30.52 Aligned_cols=32 Identities=16% Similarity=0.079 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..+..+...+...|++++|++.++++++..|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35566777778888888888888888877765
No 275
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.56 E-value=0.31 Score=36.82 Aligned_cols=83 Identities=16% Similarity=0.133 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLR---------------SRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD- 170 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 170 (534)
.++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|+++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554431 1234578888889999999999999999999888754
Q ss_pred CCCCCHhhHHHHHHHHHhc
Q 047017 171 NCKPTVITYTILIQATMLE 189 (534)
Q Consensus 171 ~~~~~~~~~~~l~~~~~~~ 189 (534)
+++.+..+|..|++-....
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5666778888888765443
No 276
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.54 E-value=0.29 Score=38.92 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc---C-------CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC-
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQE---R-------KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ- 121 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 121 (534)
|+.|++.++.....+ |.|.+.++.-+.++... . .+++|+.-|++++..+|....++..+..++...+.
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777777765555 66777665544444332 2 24556666777777778888888888888876542
Q ss_pred ----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 122 ----------IELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 122 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+++|.+.|++.... +|+...|+.-+... .+|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 45566666666665 78888888776654 35667777776654
No 277
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.47 E-value=0.9 Score=35.37 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=18.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
++..+...+.......+++.+...++.++..++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33333334444444444444444433344444444444443
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.45 E-value=0.024 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
|++.++.+|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444555556666666666666666655553
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.44 E-value=0.04 Score=30.27 Aligned_cols=32 Identities=19% Similarity=0.039 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
.+|..++.++...|++++|+..|+++++.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777776664
No 280
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.42 E-value=2.3 Score=39.80 Aligned_cols=90 Identities=17% Similarity=0.040 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHH-HHcCCCHHHHHHHHHHHH
Q 047017 91 AVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGS-LCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 91 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~ 168 (534)
...+|+.+..+-+.|+..|...+..+.+.+.+.+...+|.+|... +| ++..|-..... |...-+++.|..+|.+.+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 445667777666778999999998888888899999999998876 33 34445433333 333444889999999888
Q ss_pred hCCCCCCHhhHHHHH
Q 047017 169 RDNCKPTVITYTILI 183 (534)
Q Consensus 169 ~~~~~~~~~~~~~l~ 183 (534)
+.+ |.++..|....
T Consensus 168 R~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFN-PDSPKLWKEYF 181 (568)
T ss_pred hcC-CCChHHHHHHH
Confidence 875 44555444433
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.32 E-value=2.5 Score=39.58 Aligned_cols=99 Identities=8% Similarity=0.007 Sum_probs=65.7
Q ss_pred CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChHHHHHHHHHHHH-cCCCCCHHH
Q 047017 401 EPDEIT-YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFC--KTRRINESIEVLAAMFE-KGCKPNETT 476 (534)
Q Consensus 401 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~-~~~~~~~~~ 476 (534)
.|+..+ -+.++..+.+.|-..+|...+..+... ++|+...|..++..-. ..-+...+.++++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 344333 355667777788888888888888765 4556666666664321 12236677788888876 35 46777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
|......=...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77777666678888877777776665
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.27 E-value=0.88 Score=34.01 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
..+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555556655555555555442 245556666666666666666666666666665554
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.22 E-value=0.23 Score=43.10 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITYTIL 182 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 182 (534)
++..+++.+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666666666666666666552 22555666666666666666666666665543 3556665555544
Q ss_pred HHH
Q 047017 183 IQA 185 (534)
Q Consensus 183 ~~~ 185 (534)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=1.4 Score=35.67 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
...+...|++++|...++.........+ ..+-..|.+.....|.+++|+.+++.....+.. ......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3456677888888888877664311111 112224566777888888888888877554332 233345567788888
Q ss_pred CHHHHHHHHHHHHHcCCCch
Q 047017 489 WRAEAMELANALVSMHAISR 508 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~ 508 (534)
+.++|+.-|++.++.++.++
T Consensus 174 ~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 174 DKQEARAAYEKALESDASPA 193 (207)
T ss_pred chHHHHHHHHHHHHccCChH
Confidence 88888888888888874443
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.12 E-value=0.99 Score=33.76 Aligned_cols=65 Identities=26% Similarity=0.315 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
......+......|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.++++++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445555666666666666666666542 245666666667777777777777777776666654
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.96 E-value=2.5 Score=37.58 Aligned_cols=164 Identities=12% Similarity=0.149 Sum_probs=81.3
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHHhcC-CHhHHHHHHHHhcccccCChHHHHHHHHH-HHH
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVIT-------YTILIQATMLEG-QTDKAMKLLDEMGMCKKGMVGQAFQFVRS-LES 222 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~ 222 (534)
.+.|+++.|..++.++.......++.. +..++......+ +++.|..++++. .++++. -..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhc
Confidence 345666777766666654321112221 222233334555 888888877764 444433 111
Q ss_pred cCCCCC-----HhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 047017 223 RGCQPD-----VISYNMLLRTLLNMGKWE---EGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKG 294 (534)
Q Consensus 223 ~~~~~~-----~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (534)
....++ ..++..++.++...+..+ +|..+++.+...... .+..+..-+..+.+.++.+.+.+.+..|...-
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 111222 234566667777766654 344555555443211 24444455666666778888888888887752
Q ss_pred CCCCHhcHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 047017 295 LTPDAYSYDPLISAYCK--DGRLDLAIEFLDYMISD 328 (534)
Q Consensus 295 ~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 328 (534)
......+...+..+.. ......+...++.++..
T Consensus 152 -~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 152 -DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred -ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 2122334444433321 12233444445444443
No 287
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.94 E-value=1.7 Score=40.54 Aligned_cols=108 Identities=15% Similarity=-0.018 Sum_probs=73.2
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCC-----
Q 047017 414 LCRDGMVDEAVGLLVDME---STRFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFE-------KGCKPN----- 473 (534)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~----- 473 (534)
+.-.|++.+|.+++...- ..|...+ -..||.+...+.+.|.+.-+..+|.++++ .|+.|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 445688888888775431 1121112 22346666666677777777777777764 354442
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 474 -----ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 474 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
..+.....-.|.+.|++-.|.+.|.+.+...-.+|..|.+++.|....
T Consensus 330 s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122333455688999999999999999999999999999999888653
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.92 E-value=1.4 Score=34.54 Aligned_cols=55 Identities=11% Similarity=-0.102 Sum_probs=30.8
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 81 KFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 81 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.-...++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+...
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3344555666666666555555555554444455555666666666666665544
No 289
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.65 E-value=2.1 Score=35.27 Aligned_cols=179 Identities=18% Similarity=0.091 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 047017 334 IVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLIS 412 (534)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 412 (534)
+.+++.+.-.+...|+++.|.+.|+...+.. |....+...-.-++.-.|++.-|.+-+.+.-+.+. .|-...|-.+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 4556666666666666666666666666553 22222222222233344566666555544443321 111122221111
Q ss_pred HHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 047017 413 CLCRDGMVDEAVGLL-VDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-------ETTYVLLIEGI 484 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 484 (534)
..-++.+|..-+ ++... .+..-|...+..+. .|+..+ ..+++++.. +-..+ .++|--+.+-+
T Consensus 178 ---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFY-LGKISE-ETLMERLKA-DATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred ---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHH-HhhccH-HHHHHHHHh-hccchHHHHHHHHHHHHHHHHHH
Confidence 223444444333 33332 13333332222221 122111 112222222 11111 34566677777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCc----hHHHHHHHhhcchHHH
Q 047017 485 GYGGWRAEAMELANALVSMHAIS----RDTFKRLNRTFPLLDV 523 (534)
Q Consensus 485 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~ 523 (534)
...|+.++|..+|+-++..+.-+ .-++..|++.+....+
T Consensus 248 l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 248 LSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD 290 (297)
T ss_pred hccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence 78888888888888777655422 2334445555544433
No 290
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.59 E-value=0.48 Score=43.72 Aligned_cols=125 Identities=11% Similarity=-0.064 Sum_probs=77.4
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
-...|+.-.|-+-+....+. .+.++.............|+++.+...+...... +.....+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 33466666665444444333 2444444444555566778888888777665443 334456667777777778888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
..+-+.|....++ +..+...........|-++++...|++....+.+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8887777766554 4444444444445567778888888887776533
No 291
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.49 E-value=6.1 Score=39.87 Aligned_cols=415 Identities=10% Similarity=0.032 Sum_probs=194.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ--ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
-+....+.|++..+.++...+... +. ..|..-...... ...+++....++..... |.....-......+.+.+
T Consensus 39 ~A~~a~~~g~~~~~~~~~~~l~d~--pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~-P~~~~Lr~~~l~~La~~~ 113 (644)
T PRK11619 39 QIKQAWDNRQMDVVEQLMPTLKDY--PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPTL-PPARSLQSRFVNELARRE 113 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCC--Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcc
Confidence 344466778888877776665321 11 222211111111 22334333333322211 333334444455566667
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
++....+.+.. .+.+.......+.+....|+.++|......+-..| ...+.....++..+.+.|.+.... ++.
T Consensus 114 ~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~ 186 (644)
T PRK11619 114 DWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLA-YLE 186 (644)
T ss_pred CHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHH-HHH
Confidence 77766653211 13355555667777788888877877777766555 445566777888877777665544 223
Q ss_pred Hh-cccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH--HHHHHHHh
Q 047017 201 EM-GMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS--ILISSLCR 276 (534)
Q Consensus 201 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 276 (534)
++ .....|+...|..+...+ .++ ......++..+ .+...+...+.. ++|+...-. .+.-.-..
T Consensus 187 R~~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~---~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 187 RIRLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQ---NDPNTVETFART-----TGPTDFTRQMAAVAFASVA 253 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHH---HCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHH
Confidence 22 334455555555554433 112 11222222222 222222222221 112221111 11111123
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCH--hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 277 DGKTEDAVDVLRAAKEKG-LTPDA--YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
..+.+.|...+....... ..+.. .+...+.......+..+++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445677888887764432 22111 122233322223322556666666544331 2444444445555577888888
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA-VGLLVDMES 432 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 432 (534)
...+..|.... .....-.--+..++...|+.++|...|+.+... .+ |..++.+ .+.|..-.- ...... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG---FYPMVAA-QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC---cHHHHHH-HHcCCCCCCCCCCCCc-hh
Confidence 77777775432 223344445666766678888888888876431 11 2222211 122211000 000000 00
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
..+. .. .-..-+..+...|....|...+..+... .+......+.......|.++.++....
T Consensus 403 ~~~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 403 SALT-QG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred hhhc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000 00 0112234455667777777777666653 233444555555556666666655443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.49 E-value=1.9 Score=34.09 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=64.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-hHH--HHHHHHHhcCCH
Q 047017 310 CKDGRLDLAIEFLDYMISDGCLPDIV-NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-SYN--TMFSALWSSGDK 385 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~ 385 (534)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|.++-.....|... -.. .-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34566667777777666655432221 12223344556667777777777665542122211 111 112234456666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
+......+.+...+-+.....-..|..+-.+.|++..|.+.|..+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 66666665555443333333445555556666777777777766654
No 293
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.43 E-value=0.089 Score=29.35 Aligned_cols=27 Identities=15% Similarity=-0.048 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
++..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777888888888888888888554
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.35 E-value=0.29 Score=42.95 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=46.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
.|+++|.|++|+.+|...+... +.++..+..-..+|.+..++..|..-.+.+...+..-..+|..-+.+-...|...+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555666666666665555443 335555555555566666665555555555544433334444444444444555555
Q ss_pred HHHHHHHHhC
Q 047017 126 NKVLDRLRSR 135 (534)
Q Consensus 126 ~~~~~~~~~~ 135 (534)
.+-++..++.
T Consensus 185 KkD~E~vL~L 194 (536)
T KOG4648|consen 185 KKDCETVLAL 194 (536)
T ss_pred HHhHHHHHhh
Confidence 5555554444
No 295
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.28 E-value=0.44 Score=40.72 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC----------------CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG----------------MIESAFKVFDQLLRDNCKPTVITYTILIQ 184 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 184 (534)
.++-.-..++.|.+.|+..|..+|+.|+..+-+.. +-+-+++++++|...|+-||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444455666777777777777777776654322 23568899999999999999999999999
Q ss_pred HHHhcCCH
Q 047017 185 ATMLEGQT 192 (534)
Q Consensus 185 ~~~~~g~~ 192 (534)
++.+.+-.
T Consensus 167 ~FGr~~~p 174 (406)
T KOG3941|consen 167 AFGRWNFP 174 (406)
T ss_pred Hhcccccc
Confidence 98776643
No 296
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.08 E-value=0.62 Score=39.88 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 047017 367 PNVSSYNTMFSALWSS-----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVIS 441 (534)
Q Consensus 367 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 441 (534)
-+..+|...+..+... +..+-.-..++.|.+.|+.-|..+|+.|+..+-+..- .|. .+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HH
Confidence 3555666666655432 3444455556667777777777777777766544221 111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 442 YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 442 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
+....--|-+ .-+=++.++++|...|+.||.++-..|++++.+.|..
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111211 2234788999999999999999999999999888743
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.95 E-value=0.11 Score=28.16 Aligned_cols=29 Identities=21% Similarity=-0.042 Sum_probs=20.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
..++.++.+.|++++|.+.|+++++..|.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34566666777777777777777777665
No 298
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.70 E-value=8.8 Score=38.79 Aligned_cols=256 Identities=11% Similarity=0.033 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..-+..+.+.+++......+ ...|.+.......+.+....|+.++|......+-..| .........++..+.+.|
T Consensus 103 ~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 33444555666666555522 2226677777777888888999888877777665444 223445555555555444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc----------ccCChHHHHHHHHHHHHcCC
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC----------KKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~~~ 225 (534)
.+... ..+.- +......|+...|..+...+... -..+...+...+ ...
T Consensus 178 ~lt~~----------------d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~-----~~~ 235 (644)
T PRK11619 178 KQDPL----------------AYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA-----RTT 235 (644)
T ss_pred CCCHH----------------HHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh-----hcc
Confidence 43221 12211 22223344444443333332100 000111111111 111
Q ss_pred CCCHhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCC-CCCCh--hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHh
Q 047017 226 QPDVISYNMLLRT--LLNMGKWEEGEKLMTEMISRG-LEPNV--VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAY 300 (534)
Q Consensus 226 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (534)
+++...-..++.+ -....+.+.|...+....... ..+.. ..+..++......+...++...+....... .+..
T Consensus 236 ~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~ 313 (644)
T PRK11619 236 GPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTS 313 (644)
T ss_pred CCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcH
Confidence 2232111212222 223556788999998875442 22221 233444444444432566777776554332 2445
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 301 SYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
....-+......++++.+...+..|.... .......--+..++...|+.++|...|+.+.
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 55566666678999999999998876542 2344445556777777999999999999974
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.63 E-value=2.4 Score=32.01 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 436 RPTVISYNIIILGFCKTRR---INESIEVLAAMFE-KGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
.++..+--.+.+++.+..+ ..+.+.+++...+ ..+.-.......|.-++.+.++++.++++.+.+++..|+++++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4556666667777777654 4567778888886 32222344445667788899999999999999999998888765
Q ss_pred HH
Q 047017 512 KR 513 (534)
Q Consensus 512 ~~ 513 (534)
..
T Consensus 109 ~L 110 (149)
T KOG3364|consen 109 EL 110 (149)
T ss_pred HH
Confidence 54
No 300
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.58 E-value=0.24 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=7.2
Q ss_pred HHHHHhcCChhHHHHHHHHH
Q 047017 44 IKRSFRAGKFDESLYFIESM 63 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~ 63 (534)
...+...|++++|++.|+++
T Consensus 8 g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33333333333333333333
No 301
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=17 Score=41.65 Aligned_cols=112 Identities=13% Similarity=0.103 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------HH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--------ET 475 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~ 475 (534)
..+|-...+.....|.++.|...+-...+.+ -+..+-..+.-....|+...|+.++++.++... |+ +.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~-~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNF-PDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc-ccccCCccccch
Confidence 3567777777777899999988877766653 233445566677788999999999988886432 12 11
Q ss_pred HHHHHH---------HHHHccCC--HHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 476 TYVLLI---------EGIGYGGW--RAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 476 ~~~~l~---------~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.-+..+ .-....|+ -.+..++|+.+.+..|...+.++.+++.|.
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 111111 11223343 345678888888888877777777775443
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.55 E-value=8.6 Score=38.22 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHHHcCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHcCC--
Q 047017 88 SNKAVRVMEILEKYGEPDVFAYNALISG---FCKANQIELANKVLDRLRS-------RGFSPDVVTYNIMIGSLCSRG-- 155 (534)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 155 (534)
...|..+++.....+.........++.. +....|.+.|+.+|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3567777777766543322222222222 2244577778887777765 33 2334455556665532
Q ss_pred ---CHHHHHHHHHHHHhCC
Q 047017 156 ---MIESAFKVFDQLLRDN 171 (534)
Q Consensus 156 ---~~~~a~~~~~~~~~~~ 171 (534)
+...|..++.+....|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccHHHHHHHHHHHHhcC
Confidence 4566777777776665
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.44 E-value=0.21 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
+|..|...|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366788888888888888888888553
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.39 E-value=1.4 Score=35.84 Aligned_cols=97 Identities=14% Similarity=-0.044 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCK---PNETTYVLL 480 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l 480 (534)
.+..++..|.+.|+.+.|.+.+.++.+....+. ...+-.+++.....+++..+...+.++...--. ++...-...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455566666666666666666666665433332 234445566666666666666666555442111 111111111
Q ss_pred HH--HHHccCCHHHHHHHHHHHHH
Q 047017 481 IE--GIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 481 ~~--~~~~~g~~~~A~~~~~~~~~ 502 (534)
.. .+...+++.+|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23345677777666655443
No 305
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.27 E-value=0.19 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
+|..+...+...|++++|...|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666677777777777777777776655
No 306
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.19 E-value=11 Score=38.41 Aligned_cols=231 Identities=14% Similarity=0.074 Sum_probs=114.9
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHH-HHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVI-------TYTILI-QATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 221 (534)
......++++|..++.++...-..|+.. .++.+- ......|+++++.++.+.. +..+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a--------------l~~L~ 489 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA--------------LVQLP 489 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHhcc
Confidence 3456788899998888876542232221 122221 1123456666666655543 11222
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-----HHHHHhCCCh--hHHHHHHHHHHHCC
Q 047017 222 SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSIL-----ISSLCRDGKT--EDAVDVLRAAKEKG 294 (534)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~~ 294 (534)
.....+....+..+..+..-.|++++|..+.....+..-.-+...+..+ ...+...|+. ++....+.......
T Consensus 490 ~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 490 EAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred cccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2223345566777788888899999999888776654222233333222 2335566632 33333333333221
Q ss_pred ---CC---CCHhcHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 295 ---LT---PDAYSYDPLISAYCKD-GRLDLAIEFLDYMISDGCLPDIVN--YNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 295 ---~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.+ +-..+...+..++.+. +...++..-+.-.......|-... +..++......|+.++|...+.++.....
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 11 1122334444444441 122222223322222211111122 23567778889999999998888866532
Q ss_pred CCCH----hhHHHHH--HHHHhcCCHHHHHHHHHH
Q 047017 366 PPNV----SSYNTMF--SALWSSGDKIRALGMISE 394 (534)
Q Consensus 366 ~~~~----~~~~~l~--~~~~~~~~~~~a~~~~~~ 394 (534)
.+.. .+-...+ ......|+...+.....+
T Consensus 650 ~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2221 1111122 223456777777666654
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.17 E-value=1.2 Score=36.23 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI--- 146 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 146 (534)
..+..++..|.+.|+.+.|.+.|..+...- ..-...+..+++.....|++..+...+.++...-..++......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678888888888888888888877654 22345667778888888888888888777654411111111111
Q ss_pred H--HHHHHcCCCHHHHHHHHHHHH
Q 047017 147 M--IGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 147 l--~~~~~~~g~~~~a~~~~~~~~ 168 (534)
. .-.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 122345678888877776654
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.10 E-value=1.4 Score=38.37 Aligned_cols=74 Identities=20% Similarity=0.333 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS-----KGIEPDEITYNSL 410 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 410 (534)
++..++..+...++.+.+...++.+.... |-+...|..++.+|...|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34445555555566666666666665553 55555566666666666666666655555543 2455554444333
No 309
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=4.1 Score=33.09 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-----HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTY-----NIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
..+...|++++|...++..... + ....+ .-|.+.....|.+++|+.+++.....+. .......-..++..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--T-KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--c-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence 3344455555555555554432 1 11111 1233444555555555555555443321 11222333444555
Q ss_pred cCCHhHHHHHHHHh
Q 047017 189 EGQTDKAMKLLDEM 202 (534)
Q Consensus 189 ~g~~~~a~~~~~~~ 202 (534)
.|+-++|..-|...
T Consensus 172 kg~k~~Ar~ay~kA 185 (207)
T COG2976 172 KGDKQEARAAYEKA 185 (207)
T ss_pred cCchHHHHHHHHHH
Confidence 55555555555554
No 310
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.96 E-value=12 Score=38.18 Aligned_cols=225 Identities=11% Similarity=0.013 Sum_probs=111.1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHh-------cHHHH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 047017 275 CRDGKTEDAVDVLRAAKEKGLTPDAY-------SYDPL-ISAYCKDGRLDLAIEFLDYMISD----GCLPDIVNYNTILA 342 (534)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 342 (534)
....++.+|..++.++...-..|+.. .+..+ .......|+++.|.++.+..... ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667888888777766532222211 12222 12234578888888887777654 12234455666777
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHhh---HHHH--HHHHHhcCCHH--HHHHHHHHHHHC---CCC---CCHHHHHH
Q 047017 343 AFCKNGNADQALEIFEKLSDVGCPPNVSS---YNTM--FSALWSSGDKI--RALGMISEMLSK---GIE---PDEITYNS 409 (534)
Q Consensus 343 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~~---~~~---~~~~~~~~ 409 (534)
+..-.|+++.|..+.....+....-+... |..+ ...+..+|+.. +.+..+...... ..+ +-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888887776654421222222 2222 23345556322 222223222211 011 11233344
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHH
Q 047017 410 LISCLCR-DGMVDEAVGLLVDMESTRFRPTVISY--NIIILGFCKTRRINESIEVLAAMFEKGCKP----NETTYVLLIE 482 (534)
Q Consensus 410 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~ 482 (534)
+..++.+ .+...++..-+.--......|-.... ..|+......|+.++|...+.++......+ +-.+-...++
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 4444444 11122222222222222122211112 256677778899999888888887632222 2222222222
Q ss_pred --HHHccCCHHHHHHHHHH
Q 047017 483 --GIGYGGWRAEAMELANA 499 (534)
Q Consensus 483 --~~~~~g~~~~A~~~~~~ 499 (534)
.....|+..++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23366788887777666
No 311
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.88 E-value=3.5 Score=31.84 Aligned_cols=53 Identities=11% Similarity=-0.050 Sum_probs=30.9
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...++++++..++..+.-..|.....-..-...+...|++.+|..+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 34566666666666665555555544444455555666666666666666554
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.49 E-value=0.3 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMV 64 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~ 64 (534)
..+...+...|++++|+..|++++
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHH
Confidence 333333444444444444444433
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.48 E-value=2.5 Score=34.63 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=41.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHH
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK---GCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
+.|+ +.|...|-.+...+.-.++.....|+..|. ..+.++++.++.++++. +-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 455555555555443334444444443333 55666666666666552 224456666666666666666665
Q ss_pred HH
Q 047017 493 AM 494 (534)
Q Consensus 493 A~ 494 (534)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 53
No 314
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.44 E-value=0.93 Score=39.97 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 491 (534)
-|.++|.+++|+..|.+.+.. .| +.+++..-+.+|.+..++..|..=...++..+- .=...|+.-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 455666666666666555443 23 555555555566666665555544444443210 01122333333333445666
Q ss_pred HHHHHHHHHHHcCCCchHHHH
Q 047017 492 EAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 492 ~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+|.+-++.++++.|.+.+.-.
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK 203 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKK 203 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHH
Confidence 666666666666666544333
No 315
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.40 E-value=2.3 Score=37.23 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
++++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+.-.|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
No 316
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.39 E-value=7.3 Score=36.59 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc-----hHHHHHHhhhhhc
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKRLNRTFP-----LLDVYKEISHLAT 532 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ 532 (534)
+.|+.-.|...-+++++. +.-..++..|+..|. .+++-.||..+++
T Consensus 521 ~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~ 571 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLS 571 (696)
T ss_pred HhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccC
Confidence 567887888777777764 233455666665554 3555666665543
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.28 E-value=1.2 Score=31.16 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
++.+-++.+......|++.+..+.+++|.+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444445555555555555555444433
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.98 E-value=3.3 Score=29.44 Aligned_cols=46 Identities=11% Similarity=-0.012 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
..+-++.+...++.|++.+..+.+++|.+.+++.-|.++++.+..+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555555544
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.96 E-value=8.8 Score=34.34 Aligned_cols=134 Identities=15% Similarity=0.239 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCH-
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCK--DG----RLDLAIEFLDYMISDGCL---PDIVNYNTILAAFCKNGNA- 350 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~- 350 (534)
++...+++.+.+.|+.-+..++......... .. ...++..+++.|.+.... ++...+..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556777888888877666554443322222 12 255788888888876422 223334434332 33333
Q ss_pred ---HHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 351 ---DQALEIFEKLSDVGCPPNV--SSYNTMFSALWSSGD--KIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 351 ---~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
+.+..+|+.+.+.|+..+- .....++..+....+ ..++..+++.+.+.|+++....|..++-...-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 4566677777776654332 333444433322222 34677888888888888777777665544433
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=6.1 Score=38.15 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 44566666666554432 555677777777777777777777766542 3355555666666555555
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+-....+.| . .|....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555544 2 22333455667777777776654
No 321
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.80 E-value=16 Score=36.97 Aligned_cols=189 Identities=17% Similarity=0.195 Sum_probs=106.8
Q ss_pred HHHHHHHHHHH-CCCCCC--HhhHHHHHHHHH-hcCCHhHHHHHHHHHHHcCCCCh------hhHHHHHHHHHhcCCHHH
Q 047017 55 ESLYFIESMVA-NGCKPD--VVMCTKLIKKFF-QERKSNKAVRVMEILEKYGEPDV------FAYNALISGFCKANQIEL 124 (534)
Q Consensus 55 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~ 124 (534)
.|++.++.+.+ ...+|. ..++..++..+. ...+++.|+..+++.......+. ..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 36777777773 333443 335566777776 78899999999998765542211 12345567776666555
Q ss_pred HHHHHHHHHhCC----CCCChhhHHHH-HHHHHcCCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCHhH
Q 047017 125 ANKVLDRLRSRG----FSPDVVTYNIM-IGSLCSRGMIESAFKVFDQLLRDN---CKPTVITYTILIQATM--LEGQTDK 194 (534)
Q Consensus 125 a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 194 (534)
|...+++..+.- ..+-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. ..+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 988888876541 11122233333 333333489999999998887542 2444444555554433 3455566
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHH--HHcCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSL--ESRGCQPDVISYNMLLRTL--LNMGKWEEGEKLMTEM 255 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 255 (534)
+.+.++.+ ....... ......|...+|..++..+ ...|+++.+...++++
T Consensus 198 ~~~~l~~~-----------~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRA-----------IAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHH-----------HHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66655544 1111111 0111234455666666554 5577777777666554
No 322
>PRK09687 putative lyase; Provisional
Probab=91.74 E-value=9.1 Score=34.02 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 368 NVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG-MVDEAVGLLVDMESTRFRPTVISYNIII 446 (534)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 446 (534)
+..+-...+.++...++ ..+...+-.+.+. ++..+-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3444444444432 23333333333333322 12344444444442 33444555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|...++++.+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 56666555 34555554444432 1 223455566666654 46666666665554
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=7.3 Score=32.75 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 416 RDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~ 433 (534)
..+++.+|+++|++....
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 324
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.57 E-value=9.8 Score=34.06 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--CCC----HHHHHHHHHHHHhCCC---CCCHhhHHHHH
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCS--RGM----IESAFKVFDQLLRDNC---KPTVITYTILI 183 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~ 183 (534)
++...+++.+.+.|+..+..+|.+....... ..+ ...|..+|+.|++... .++..++..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL 148 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL 148 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence 4456778888888888777776653333332 222 4678899999988742 23334444444
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.50 E-value=6.1 Score=31.56 Aligned_cols=135 Identities=14% Similarity=0.112 Sum_probs=68.8
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 354 LEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST 433 (534)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 433 (534)
.++.+.+.+.+++++...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 455556666677777778888888888777765544433 3344444443333332221 2223333333333321
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
=...+..++..+...|++-+|+++.......+ ......++.+..+.+|..--..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00123455667777788887777776642211 11123455555556655544444443333
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.34 E-value=6 Score=31.17 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=62.8
Q ss_pred ChhhHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 36 KETQFMKLI---KRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 36 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+......|+ ..-...++.+.+..++.-+.-.. |.....-..-+..++..|++.+|..+|+.+....+..+..-..+
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444444 44557889999999999887653 33344444455667899999999999999988766555555444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 047017 113 ISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.-++...|+. .-...-+++.+.
T Consensus 85 A~CL~~~~D~-~Wr~~A~evle~ 106 (160)
T PF09613_consen 85 ALCLYALGDP-SWRRYADEVLES 106 (160)
T ss_pred HHHHHHcCCh-HHHHHHHHHHhc
Confidence 4444444443 223333444544
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.06 E-value=19 Score=36.39 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
.+.+.|++++|.+.++++- .-|.++......+..+..
T Consensus 514 ~~~~~g~~~~AL~~i~~L~-liP~~~~~V~~~a~~f~~ 550 (613)
T PF04097_consen 514 DLYHAGQYEQALDIIEKLD-LIPLDPSEVRRCAENFRQ 550 (613)
T ss_dssp HHHHTT-HHHHHHHHHHTT--S-S-HHHHHHHHHCGCC
T ss_pred HHHHcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhc
Confidence 3557899999998887764 445555555555444443
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=4.8 Score=31.13 Aligned_cols=78 Identities=6% Similarity=-0.013 Sum_probs=51.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
++..-...++++++..+++.+.-.. |...+.-..-+..+...|++.+|.++|+.+....+..+..-..+..++.-.|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3344456899999999999887653 33334334445567899999999999999998754444444444444333443
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.80 E-value=3.5 Score=33.82 Aligned_cols=80 Identities=8% Similarity=-0.070 Sum_probs=60.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.+.+.|+ +.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4555565 667777777777665556666666766665 67889999999888764 236788999999999999999
Q ss_pred HhHHH
Q 047017 192 TDKAM 196 (534)
Q Consensus 192 ~~~a~ 196 (534)
++.|-
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 98874
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.78 E-value=2.1 Score=37.46 Aligned_cols=103 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 67 GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG----EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVV 142 (534)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 142 (534)
|.+....+...++.......+++++..++-++.... .++.. -...++.+. .-++++++.++..-++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444445555555555555677888888877766543 11111 122333333 336788998888888889999999
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 143 TYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 143 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+++.++..+.+.+++.+|..+...|+..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887664
No 331
>PRK09687 putative lyase; Provisional
Probab=90.61 E-value=12 Score=33.30 Aligned_cols=234 Identities=16% Similarity=0.083 Sum_probs=144.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHhcH
Q 047017 227 PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKT----EDAVDVLRAAKEKGLTPDAYSY 302 (534)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 302 (534)
++.......+.++...|..+ +...+..+.. .+|...-...+.++...|+. .++...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 45666666666776666533 3333334433 33566666667777777763 4567777766443 3455555
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 303 DPLISAYCKDGRL-----DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 303 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..++..+-.+.+ .++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 5555555554321 233333433333 2366666677777777776 567777766665 345566666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 047017 378 ALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRIN 456 (534)
Q Consensus 378 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 456 (534)
++...+ +...+...+..+.. .++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 666653 24466777766664 4566777777888888887 56777666666542 2 234677888888885
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
+|+..+..+.+. .||..+....+.+|.
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 688888888875 347777666666654
No 332
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.58 E-value=1.7 Score=26.73 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.+.-++.+.|++++|+++.+.+++..|.+..+....
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455677888888888888888888888888665543
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=7.4 Score=32.84 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=58.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDV-VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
..|....++..|+..|.+++.. .|+. .-|..-+.++.+..+++.+..--...++..+..+.....+.........++
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3455566777777777776664 3443 445556666777777777777777777766666666666777777777777
Q ss_pred HHHHHHHHHH
Q 047017 124 LANKVLDRLR 133 (534)
Q Consensus 124 ~a~~~~~~~~ 133 (534)
.|+..+.+..
T Consensus 96 eaI~~Lqra~ 105 (284)
T KOG4642|consen 96 EAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHH
Confidence 7777777663
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.20 E-value=23 Score=35.91 Aligned_cols=168 Identities=12% Similarity=0.191 Sum_probs=102.4
Q ss_pred ccChhhHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHh-----hHHHHHHHHHhcCCHhHHHHHHHHHHHcC-C---
Q 047017 34 DVKETQFMKLIKRSF-RAGKFDESLYFIESMVANGCKPDVV-----MCTKLIKKFFQERKSNKAVRVMEILEKYG-E--- 103 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~--- 103 (534)
.....++..+...+. ...+++.|...+++.......++.. ....++..+.+.+... |...++...+.- .
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 345566778888877 6889999999999986543232222 1234566666666555 999888877654 2
Q ss_pred -CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHH--HcCCCHHHHHHHHHHHHhCC-----
Q 047017 104 -PDVFAYNAL-ISGFCKANQIELANKVLDRLRSRG---FSPDVVTYNIMIGSL--CSRGMIESAFKVFDQLLRDN----- 171 (534)
Q Consensus 104 -~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~----- 171 (534)
.-...|..+ +..+...+++..|.+.++.+...- ..|...++..++.+. .+.+..+++.+.++.+....
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 112233333 233333479999999998887542 233344444444443 34566677777777664321
Q ss_pred ----CCCCHhhHHHHHHH--HHhcCCHhHHHHHHHHh
Q 047017 172 ----CKPTVITYTILIQA--TMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 172 ----~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~ 202 (534)
..|-..+|..++.. +...|+++.+...++.+
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344556666554 44678888888777766
No 335
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.16 E-value=1.2 Score=42.38 Aligned_cols=116 Identities=9% Similarity=-0.075 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047017 401 EPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480 (534)
Q Consensus 401 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 480 (534)
.|--..+|.....+...|+...|...+............+....|+....+.|-...|-.++.+.+... ...+.++..+
T Consensus 604 ~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~ 682 (886)
T KOG4507|consen 604 APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSL 682 (886)
T ss_pred CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhc
Confidence 333333444444445678999999988887654333344556677777888888888999988888765 3456777888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
.+++....+.+.|++.++.+.++.+.++..-..|..+
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999999999999999998777665544
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.08 E-value=12 Score=32.71 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 138 SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-NCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 138 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
.++..+....+..++..+++.+-.++++..... +...|...|..+++.-...|+..-..++..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 445555556666666666666666666655543 3344555666666666666666655555554
No 337
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.06 E-value=20 Score=35.89 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH
Q 047017 452 TRRINESIEVLAAMFEKGCKPNE 474 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~ 474 (534)
.|++.+|.+.+-.+++.+..|..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHH
Confidence 46666666666666555555443
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.90 E-value=0.071 Score=41.82 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=22.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 80 KKFFQERKSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLD 130 (534)
Q Consensus 80 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 130 (534)
..+.+.+.++....+++.+...+ ..+....+.++..|++.+..++..++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444444444454444433 3334444455555554444444444333
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.88 E-value=3.5 Score=34.10 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 047017 407 YNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGC--KPNETTYVLLIEG 483 (534)
Q Consensus 407 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~ 483 (534)
.+.-+..+.+.+...+++...+.-++.+ +.+...-..++..++-.|++++|..-++-.-.... .+...+|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445566777788888888887776653 33555666778888888888888877776655422 2334556665543
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.74 E-value=45 Score=38.61 Aligned_cols=324 Identities=10% Similarity=0.039 Sum_probs=156.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRDNC--KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR 223 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 223 (534)
.+..+-.+.+.+..|...++.-..... ......+..+...|..-+++|....+...-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r--------------------- 1446 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR--------------------- 1446 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh---------------------
Confidence 344455567777788877777311110 112233444445777777777766655421
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 224 GCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
..+.. ...-+......|++..|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++
T Consensus 1447 --~a~~s-l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~ 1521 (2382)
T KOG0890|consen 1447 --FADPS-LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELN 1521 (2382)
T ss_pred --hcCcc-HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHH
Confidence 01222 2233344566788888888888888774 3346677777777777777777766555544431 11222222
Q ss_pred H-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhCCCHH--HHHHHHHHHhhC--------CCC-CCH
Q 047017 304 P-LISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT--ILAAFCKNGNAD--QALEIFEKLSDV--------GCP-PNV 369 (534)
Q Consensus 304 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~--~A~~~~~~~~~~--------~~~-~~~ 369 (534)
. -..+--+.++++.....+. .. +...|.. ++....+..+-+ .-....+.+.+. +.. .-.
T Consensus 1522 s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~ 1594 (2382)
T KOG0890|consen 1522 SLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYV 1594 (2382)
T ss_pred HHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHH
Confidence 2 2223345666666555544 11 1111211 222222211111 111122222111 000 001
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCC-----ChhhH
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEML-SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDM-ESTRFRP-----TVISY 442 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-----~~~~~ 442 (534)
..|..++..+.-.. .+.-.+.+.... ......+...|..-+..-....+..+-+--+++. ......| -..+|
T Consensus 1595 ~~Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1595 RSYEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 22333333222111 000001110000 0001111112222221111111111111111111 1111121 25678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
...++.....|.++.|...+-.+.+.+ -+..+...++-+...|+...|..++++.++.+..
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 888998899999999999888887765 2456677888899999999999999999976543
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.63 E-value=0.97 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.+++.+...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887763
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.62 E-value=25 Score=35.54 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR 154 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (534)
-.++-.|.++|++++|.++....... .......+...+..|...
T Consensus 115 Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 115 WALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 34566677788888887777444332 233445555666666554
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.55 E-value=2.3 Score=36.81 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
+.....|..+|.+.+|.++.++....+ +.+...+..++..++..||--.+.+-+++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 334444445555555555555444432 22444444455555555554444444433
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.38 E-value=3.8 Score=28.97 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 87 KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
..++|..+-+.+...+.....+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++..-+.+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 35666666666655432222233333455667888888888777663 678888776654 466776777777777
Q ss_pred HHhCCCCCCHhhHH
Q 047017 167 LLRDNCKPTVITYT 180 (534)
Q Consensus 167 ~~~~~~~~~~~~~~ 180 (534)
+...| .|....|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 55444443
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.35 E-value=14 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.148 Sum_probs=32.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
+......|..+|.+.+|.++.+++++.+|-+.+.+..|...+...|+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence 34445666777777777777777777777777777777777766666
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=5.8 Score=38.26 Aligned_cols=130 Identities=21% Similarity=0.208 Sum_probs=65.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 267 YSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK 346 (534)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 346 (534)
.+.++..+.+.|-.++|+++- +|+.. -.....+.|+++.|.++..+. .+..-|..|..+...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence 344555555555555554432 22211 122334566666666554432 134456666666666
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
.+++..|.+.|.+.... ..|+-.+...|+.+....+-....+.|.. + ....+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHH
Confidence 66666666666655432 24444455555555444444444444321 2 222344456666666666
Q ss_pred HHH
Q 047017 427 LVD 429 (534)
Q Consensus 427 ~~~ 429 (534)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 543
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.19 E-value=21 Score=34.04 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=86.8
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
.|......++..+...-.+.-...+-.+++..| .+-..+..++.+|.+. ..+.-..+|+++.+..+ .+...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 344455556666666656666666666666543 3455566666666665 44555666666665432 2333333334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPD-----EITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYNIIILGFC 450 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 450 (534)
..|.+ .+...+..+|.++...-++-. ...|..+... -..+.+....+..++... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33333 556666666666554311100 1123333221 123444555554444332 22222333444445555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...++++|++++..+++.+- .|......++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 55666666666666655442 244444444443
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.84 E-value=18 Score=32.95 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhCCC------------HHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 331 LPDIVNYNTILAAFCKNGN------------ADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
|.|..+|..++..--..-. .+.-+.+++++.+.+ |.+...+..++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5567777777654333211 233455666666553 555566666666666666666666666666664
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 047017 399 GIEPDEITYNSLISCLCR---DGMVDEAVGLLVDME 431 (534)
Q Consensus 399 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 431 (534)
. +-+...|..++..... .-.++....+|.+..
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 2 2245555555554433 223555555555443
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.51 E-value=21 Score=33.11 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=35.2
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP---DIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
..++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666665532111 233333444455556666666666665554
No 350
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=88.34 E-value=31 Score=35.03 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=58.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH---HcCCCHHHHHHHHHHHHhCC
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL---CSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~ 171 (534)
++.-...++.+...+..|+..+.+.|++++....-..|.+. .+.+...|...+... ...++..++..+|++.+..-
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy 180 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY 180 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc
Confidence 33333333555566777778888888887766666666554 134566666555432 33466777778887776542
Q ss_pred CCCCHhhHHHHHHHH-------HhcCCHhHHHHHHHHh
Q 047017 172 CKPTVITYTILIQAT-------MLEGQTDKAMKLLDEM 202 (534)
Q Consensus 172 ~~~~~~~~~~l~~~~-------~~~g~~~~a~~~~~~~ 202 (534)
. ++..|.-.+... .+.++++....+|.++
T Consensus 181 ~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ra 216 (881)
T KOG0128|consen 181 N--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERA 216 (881)
T ss_pred c--cchHHHHHHHHHHhccccccccccchhhhHHHHHH
Confidence 2 223333333332 2335566666666654
No 351
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.07 E-value=0.42 Score=42.14 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=57.1
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 161 (534)
...|.++.|++.|...+..+++....|..-..++.+.+.+..|++=+....+. .|| ...|-.-..+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 34566777777777777776666666666677777777777777766666655 333 223333334444567777777
Q ss_pred HHHHHHHhCCCCCCH
Q 047017 162 KVFDQLLRDNCKPTV 176 (534)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (534)
..+....+.+..+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 777776666544433
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.91 E-value=5.1 Score=33.23 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAYNALISG 115 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 115 (534)
...+..+++.++.++|+.+.++-++.. |.+...-..+++.++-.|++++|..-++.+-...+. ....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445667777778888888777766654 556666677777777788888887777666655422 33445554443
No 353
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.84 E-value=1.2 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 047017 78 LIKKFFQERKSNKAVRVMEI 97 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~ 97 (534)
++..+...|++++|...|++
T Consensus 7 lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 7 LGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.10 E-value=25 Score=32.60 Aligned_cols=95 Identities=15% Similarity=0.045 Sum_probs=60.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHH
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFC-KTRRINESIEVLAAMFEK------GCKPNETTYVLLIE 482 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~ 482 (534)
.+..+.+.|.+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+..... ..-|+ ..|+. .-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~-aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSI-AL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHH-HH
Confidence 34567788999999999988888765556666666676664 567777777777766541 11233 23332 22
Q ss_pred HHHccCCH---------------HHHHHHHHHHHHcCCC
Q 047017 483 GIGYGGWR---------------AEAMELANALVSMHAI 506 (534)
Q Consensus 483 ~~~~~g~~---------------~~A~~~~~~~~~~~~~ 506 (534)
++...++. +.|...+++++...|.
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 34444444 7788777777766553
No 355
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.07 E-value=1.6 Score=24.89 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
.+++.+...|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777888888888888888877765
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.81 E-value=25 Score=32.14 Aligned_cols=107 Identities=13% Similarity=0.037 Sum_probs=73.9
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCC------------HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 61 ESMVANGCKPDVVMCTKLIKKFFQERK------------SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
++.++.. |.|..+|..++..--..-. .+.-+.+++++.+.+|.+...+..++..+.+..+.++..+.
T Consensus 9 ~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 9 NRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333433 6678888877764332211 34556788888888888889999999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc---CCCHHHHHHHHHHHHh
Q 047017 129 LDRLRSRGFSPDVVTYNIMIGSLCS---RGMIESAFKVFDQLLR 169 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 169 (534)
++++.... +-+...|...+..... .-.++....+|.+.++
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 99988772 2256777777765543 3346677777666553
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.66 E-value=8.4 Score=27.36 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.+...+...++.+++..+.+.+.++..|+|++|..+.+.. ..||...|..+. -.+.|-.+.+...+.++...|
T Consensus 26 tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 26 TIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3344444444445555555555555555555555554332 345666665443 345565565666665565554
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.44 E-value=1.6 Score=22.67 Aligned_cols=29 Identities=17% Similarity=-0.003 Sum_probs=16.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 477 YVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 477 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
+..++..+...|++++|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34455555556666666666666655443
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.40 E-value=9.9 Score=27.17 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
+..+-++.+...+.-|++......++++.+.+++..|.++|+.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555443
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.37 E-value=16 Score=29.51 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH
Q 047017 158 ESAFKVFDQLLRDNCKPTVITYTILIQATMLEG----QTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN 233 (534)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 233 (534)
++|..-|++.+..+ |....++..+..+|...+ +..+|...|+ +|...|++.... .|+...|+
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~-----------kA~~~FqkAv~~--~P~ne~Y~ 117 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFE-----------KATEYFQKAVDE--DPNNELYR 117 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHH-----------HHHHHHHHHHHH---TT-HHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHH-----------HHHHHHHHHHhc--CCCcHHHH
Confidence 45555566666654 444567777777776543 4445555554 456667766665 57888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
.-+.... +|-++..++.+.+
T Consensus 118 ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 118 KSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHH------hhHHHHHHHHHHH
Confidence 7776653 4556666665553
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.88 E-value=0.18 Score=44.29 Aligned_cols=89 Identities=20% Similarity=0.134 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN-ETTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 493 (534)
...|.+++|++.+...+..+ ++....|..-..++.+.+++..|++=+...++.+ || ..-|-.-..+....|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 35677888888887777653 3455556666667777778887777777776643 33 22233333444556788888
Q ss_pred HHHHHHHHHcCCC
Q 047017 494 MELANALVSMHAI 506 (534)
Q Consensus 494 ~~~~~~~~~~~~~ 506 (534)
.+.+..+.+++..
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 8888888777654
No 362
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.50 E-value=2.2 Score=25.01 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=9.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 047017 446 ILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~ 466 (534)
..+|...|+.+.|.+++++.+
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 363
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=12 Score=31.67 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCCHhhH-----------HHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVAN------GCKPDVVMC-----------TKLIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~-----------~~l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
+...-...+.+.|++.+|...|++++.. .-+|...-| ....+++...|++-++++...+++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444556788899999999888876421 113333333 33344566667777777777777777
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.+.+..+|..-+.+.+..-+..+|..-|..+++.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777765
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.32 E-value=2.2 Score=22.54 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 488 GWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
|+.+.|..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766544
No 365
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.24 E-value=1.5 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=9.5
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 047017 42 KLIKRSFRAGKFDESLYFI 60 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~ 60 (534)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555444
No 366
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.23 E-value=12 Score=27.03 Aligned_cols=80 Identities=15% Similarity=0.181 Sum_probs=40.2
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHH
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFD 165 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 165 (534)
...++|..+.+.+...+.....+-..-+..+.++|++++| ++.- ... ..||...|..|.. .+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~-~~~-~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA--LLLP-QCH-CYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH--HHHH-TTS---GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH--HHhc-ccC-CCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3456666666666665443333333444556667777777 1111 111 2456666555433 45666666666666
Q ss_pred HHHhCC
Q 047017 166 QLLRDN 171 (534)
Q Consensus 166 ~~~~~~ 171 (534)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.88 E-value=18 Score=30.61 Aligned_cols=75 Identities=15% Similarity=0.063 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 440 ISYNIIILGFCKTRRIN-------ESIEVLAAMFEKGCKP----N-ETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
..+..+++.|...|+.+ .|.+.|.+..+..-.| + ..+.-.++....+.|+.++|.++|.+++.....+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 34556677777777743 4556666655532121 2 2333456667778999999999999999876544
Q ss_pred h-HHHHHH
Q 047017 508 R-DTFKRL 514 (534)
Q Consensus 508 ~-~~~~~l 514 (534)
. ..+..+
T Consensus 199 ~~~~l~~~ 206 (214)
T PF09986_consen 199 KEPKLKDM 206 (214)
T ss_pred CcHHHHHH
Confidence 4 344433
No 368
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.80 E-value=51 Score=33.97 Aligned_cols=96 Identities=13% Similarity=0.043 Sum_probs=61.5
Q ss_pred HhcCCHHHHHHHHHHHHhC------CCCCChhhHHHHHHHHH---------------hcCChHHHHHHHHHHHHcCCCCC
Q 047017 415 CRDGMVDEAVGLLVDMEST------RFRPTVISYNIIILGFC---------------KTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
...|++.+|.+.|+.++-. .-..+..-...++..|. ..++.+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4679999999999887632 01112222334444431 12344555444444444566664
Q ss_pred H--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 474 E--TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 474 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
. .+....+..+.+.+++..|..+..++++..|.++.+
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3 344567788999999999999999999999987744
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.63 E-value=18 Score=30.71 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=73.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHh------CCCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 047017 412 SCLCRDGMVDEAVGLLVDMES------TRFRPTV-----------ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE 474 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~------~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 474 (534)
+-+.+.|++.+|..-+.+++. ..-+|-. ..+..+..++...|++-++++.-.+.+.... -+.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~-~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chH
Confidence 344566777776666655421 0112222 2233445566778999999999999988753 367
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 475 TTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 475 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..|-.-+++....=+.++|.+-|.++++++|.-.++..+-.+...
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le 309 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLE 309 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 777777777777778999999999999999988777776655554
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.38 E-value=26 Score=30.58 Aligned_cols=26 Identities=12% Similarity=0.012 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVA 65 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 65 (534)
.......++-..||..|+...++..+
T Consensus 38 Le~Aad~LvV~rdF~aal~tCerglq 63 (309)
T PF07163_consen 38 LEEAADLLVVHRDFQAALETCERGLQ 63 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667788888888887665
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.24 E-value=8.1 Score=28.76 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 462 LAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+......++.|++.+....+++|.+.+|+.-|.++++-+..+-
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3444444555555555555555555555555555555554443
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=2.2 Score=35.80 Aligned_cols=87 Identities=17% Similarity=0.058 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTV-ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWR 490 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 490 (534)
.|....+++.|...+.+.+.. .|+. .-|..=+.++.+..+++.+..=-.++++. .|+.. ....+...+.....+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 455667788888877777664 5665 44556677788888888888777777765 44433 334566667777889
Q ss_pred HHHHHHHHHHHHc
Q 047017 491 AEAMELANALVSM 503 (534)
Q Consensus 491 ~~A~~~~~~~~~~ 503 (534)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 9999998888554
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.55 E-value=28 Score=30.04 Aligned_cols=157 Identities=7% Similarity=0.079 Sum_probs=77.4
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCChhhHHHHHHHHHh
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVI---SYNMLLRTLLNMGKWEEGEKLMTEMISR---GL--EPNVVTYSILISSLCR 276 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~ 276 (534)
......++|+.-|.++.+........ ....++....+.+++++....+.+++.- .+ ..+..+.+.++.....
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 34446666777776666554332222 2344556666677777776666666432 11 1233445555555555
Q ss_pred CCChhHHHHHHHHHHHC-----CCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----C-------CHHHHHHH
Q 047017 277 DGKTEDAVDVLRAAKEK-----GLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL----P-------DIVNYNTI 340 (534)
Q Consensus 277 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-------~~~~~~~l 340 (534)
+.+.+-...+++.-.+. +-..--.+-..+...|...+++.+..++++++....-. . -...|..-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 55555544444433221 00001112234555666666666666666665442100 0 12344555
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 047017 341 LAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~ 361 (534)
+..|....+-.....+|++..
T Consensus 198 IQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHH
Confidence 556655555555556666553
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.26 E-value=48 Score=32.40 Aligned_cols=96 Identities=7% Similarity=-0.011 Sum_probs=62.8
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 40 FMKLIKRSF-RAGKFDESLYFIESMVANGCKPD-VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 40 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
+-.+...|. ..|+..+|+..+....-...+.. ......++..+.+.|...+|--++..+....+.-..-+..+..+++
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 334444444 47888888888877665432222 2345667778888888888877776655544333333666777888
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|.+......|+...+.
T Consensus 295 ml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQA 312 (886)
T ss_pred HHhhhhhhhhhhhhhhcc
Confidence 888888877777777665
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.73 E-value=14 Score=25.96 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=15.3
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG 102 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 102 (534)
|.|......+...+...|++++|.+.+-.+.+.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3344444455555555555555555554444443
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.63 E-value=3.8 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=18.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANG 67 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 67 (534)
.+.++|...|+.+.|..++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677778888888888887777543
No 377
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.98 E-value=10 Score=33.72 Aligned_cols=103 Identities=9% Similarity=-0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTR---FRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+|..=+.-|.+..++..|...|.+-+... ...+...|+.-..+-...|++..|+.=...++..++. ....|..-.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhh
Confidence 445555666677777777777776655431 2223455555555555667777777666666665422 344444555
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.++....++++|..+++...+......
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 566666777777777776655544443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.91 E-value=5.5 Score=26.82 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=23.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCchHHHHH---HHhhcchHHHHHHhhh
Q 047017 486 YGGWRAEAMELANALVSMHAISRDTFKR---LNRTFPLLDVYKEISH 529 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~ 529 (534)
..++.++|+..|+++++..+.+++.+.. +..+|...|+|+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555544433 3344444555555443
No 379
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.87 E-value=0.66 Score=36.28 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 341 LAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33333444444444444444443323334444444555544444444444443
No 380
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.45 E-value=4.6 Score=37.81 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.-+..++..+.|+.|+.++.++++.. +.....|..-..++.+.+++..|+.=+..+.+..|.....|..-..++.+.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34556777888888888888888764 33344444445777888888888888888888776666677777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
+.+|...|+..... .|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 88888888877765 66655555554433
No 381
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.67 E-value=42 Score=30.07 Aligned_cols=83 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----C
Q 047017 276 RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----N 347 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 347 (534)
..+++..+...+......+ +......+...|.. ..+..+|..++....+.+ .......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556667777776666533 22333333333332 234566666666555544 23333334444444 2
Q ss_pred CCHHHHHHHHHHHhhCC
Q 047017 348 GNADQALEIFEKLSDVG 364 (534)
Q Consensus 348 ~~~~~A~~~~~~~~~~~ 364 (534)
.+..+|..+|+++.+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 25566666666666655
No 382
>PRK10941 hypothetical protein; Provisional
Probab=80.43 E-value=17 Score=31.95 Aligned_cols=65 Identities=5% Similarity=-0.112 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
.+-.+|.+.++++.|+.+.+.++...+. ++.-+.--+-.|.+.|.+..|..-++..++.-|..|.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3445566667777777777666665422 4444444555566667777777777777666666553
No 383
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.93 E-value=19 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (534)
++.+-++.+...+.-|++......++++.+.+++..|.++|+.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555444
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.45 E-value=4.2 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=8.4
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 047017 43 LIKRSFRAGKFDESLYFIESM 63 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~ 63 (534)
+...+...|+++.|...|+..
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHH
Confidence 333333444444444444333
No 385
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=79.38 E-value=47 Score=29.79 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=68.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----
Q 047017 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK---- 311 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 311 (534)
...+++..+...+......+ +......+...|.. ..+...|..+++...+.|. +.....+...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 34677888888888877643 22344444444433 3467788888887777653 3344456666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHhhCC
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG-------NADQALEIFEKLSDVG 364 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~ 364 (534)
..+..+|..+++++...|..+...+...+...|.... +...|...|.++...+
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 3478888888888888874432222333444443321 1224555555555443
No 386
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.16 E-value=31 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=8.0
Q ss_pred CCCCCChhhHHHHHHHHHcCC
Q 047017 135 RGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~g 155 (534)
.+++|+...+..++..+.+.|
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~ 43 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNG 43 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcC
Confidence 333333333333333333333
No 387
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.58 E-value=45 Score=29.19 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-
Q 047017 110 NALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML- 188 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 188 (534)
..=|.+++..|++.++....-+--+.--+.-......-|-.|.+.+.+..+.++-...++..-......|..++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3446778888888887665444333211122344445556678888888888888877765323333447777666654
Q ss_pred ----cCCHhHHHHHHHHhcccccCChHHHHHHHHHHH
Q 047017 189 ----EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 189 ----~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 221 (534)
.|.+++|.++...-......+-..++++..+..
T Consensus 167 VLlPLG~~~eAeelv~gs~af~EeQr~~aL~~v~~~~ 203 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSAAFTEEQRQEALQAVEEAR 203 (309)
T ss_pred HHhccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 588999988886543333334444555544433
No 388
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=78.36 E-value=85 Score=32.22 Aligned_cols=393 Identities=9% Similarity=-0.004 Sum_probs=185.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK---ANQIELANKVLDRLRSRGFSPDVVTYN 145 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 145 (534)
..+...+..|+..+.+.|++++....-..|....|.++..|..-+..... .++..++..+|++.+.. .-++..|.
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~ 187 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWE 187 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHH
Confidence 44666778888899999999888887777777778888888766655443 36677788888887755 33444554
Q ss_pred HHHHHHH-------cCCCHHHHHHHHHHHHhC-CCCCC--HhhH---HHHHHHHHhcCCHhHHHHHHHHhcccccCChHH
Q 047017 146 IMIGSLC-------SRGMIESAFKVFDQLLRD-NCKPT--VITY---TILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 146 ~l~~~~~-------~~g~~~~a~~~~~~~~~~-~~~~~--~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 212 (534)
..+.... ..++++....+|.+++.. |...+ ...| .-+-..|...-..++...++..-
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~e---------- 257 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRE---------- 257 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------
Confidence 4444332 346677888888887754 21111 1112 22222233333334444444332
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHH-------HhcCCHHHHHH-------HHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTL-------LNMGKWEEGEK-------LMTEMISRGLEPNVVTYSILISSLCRDG 278 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (534)
...+ .|..+-+.-..-. ....+++.+.. .+++.... ..+-...|..++..+...|
T Consensus 258 --------l~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G 326 (881)
T KOG0128|consen 258 --------LKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSG 326 (881)
T ss_pred --------Hhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 2211 1111111100000 01122222222 22222222 1233445677777778888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHH
Q 047017 279 KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYC--KDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQ-ALE 355 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~ 355 (534)
++......++++.... ..+...+..-. .|. ..+-.+.+...+.+.... .+....+|...+.++.+.+.... ...
T Consensus 327 ~p~ri~l~~eR~~~E~-~~~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~ 403 (881)
T KOG0128|consen 327 DPVRIQLIEERAVAEM-VLDRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQ 403 (881)
T ss_pred CchHHHHHHHHHHHhc-cccHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHH
Confidence 8877777777766542 11222221110 010 011122222233322222 12223333333333333332211 112
Q ss_pred HHHHHhhCCC---------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 047017 356 IFEKLSDVGC---------------PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL-CRDGM 419 (534)
Q Consensus 356 ~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 419 (534)
.|......++ -.+...|..+-. .+..|...|.........+...+........ .-.++
T Consensus 404 ~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~------~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~n 477 (881)
T KOG0128|consen 404 NLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRA------AFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKN 477 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHH------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhc
Confidence 2222222111 111111111111 2334444444444332233333333333222 24678
Q ss_pred HHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPTVI-SYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 494 (534)
++.++.+++.+...+.. +.. .|...+..-...|+...+..++..+...-..|+ ..++..+.+.-...|.++.+.
T Consensus 478 md~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred hhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 88899998888766433 222 555555555667888888888777776544443 223333333333445555443
No 389
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.98 E-value=48 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=7.3
Q ss_pred hcCCHHHHHHHHHHH
Q 047017 416 RDGMVDEAVGLLVDM 430 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~ 430 (534)
-.++...|...+...
T Consensus 153 ~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 153 CLGNLRDANELFDTF 167 (260)
T ss_dssp HTTBHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 345555555544444
No 390
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.78 E-value=86 Score=31.95 Aligned_cols=16 Identities=13% Similarity=-0.137 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHcc
Q 047017 472 PNETTYVLLIEGIGYG 487 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~ 487 (534)
.|...|..|+..+...
T Consensus 688 ~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 688 DDSELWEDLINYSLDK 703 (846)
T ss_pred CCHHHHHHHHHHhhcC
Confidence 3666777776655543
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.75 E-value=14 Score=30.67 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 471 KPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 471 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.|+..++..++.++...|+.++|.++.+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 67888888888889999999999999998888888
No 392
>PRK10941 hypothetical protein; Provisional
Probab=77.74 E-value=31 Score=30.40 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR-GFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 152 (534)
+.+-.++.+.++++.|++..+.+....|.++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 345567889999999999999999998999988888888899999999999888887765 22345555555555443
No 393
>PRK12798 chemotaxis protein; Reviewed
Probab=77.69 E-value=62 Score=30.29 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHH
Q 047017 312 DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAF-CKNGNADQALEIFEKLSDVGCPPNV----SSYNTMFSALWSSGDKI 386 (534)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 386 (534)
.|+..++.+.+..+.....++....+..|+.+- ....+...|++.|+...-. -|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 566777777776665555455555555554443 3344666777777766543 2222 22333344455666666
Q ss_pred HHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047017 387 RALGMISEMLSK-GIEPDEIT-YNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYNIIILGFCKTRRINESIEVLA 463 (534)
Q Consensus 387 ~a~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 463 (534)
++..+-.+.... ...|-... +..+.....+.++-..- ..+..+... ...--...|..+.+.-...|+.+-|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666555544433 11111111 12222233333321111 112222222 111123456666666666677766666666
Q ss_pred HHHHc
Q 047017 464 AMFEK 468 (534)
Q Consensus 464 ~~~~~ 468 (534)
++...
T Consensus 282 ~A~~L 286 (421)
T PRK12798 282 RALKL 286 (421)
T ss_pred HHHHh
Confidence 66553
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.65 E-value=16 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=17.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
.++......|++++|...++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455566677777777777777764
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.27 E-value=65 Score=30.28 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=43.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh--hHHHHHHHH--HhcCCHhHHHHHHHHHHHc
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDVV--MCTKLIKKF--FQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 101 (534)
..+..+.+.++|..|.++|+.+.+. ++++.. .+..+..+| +..-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556778999999999999999886 455444 444454444 5677888999999987764
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.87 E-value=23 Score=24.90 Aligned_cols=64 Identities=20% Similarity=0.059 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCC
Q 047017 93 RVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 156 (534)
.-++.....+|.|..+...+...+...|+++.|++.+-.+.+..-.. +...-..++..+...|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455555668888888888889999999999988888888763221 23344444444444443
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=76.54 E-value=15 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCCC--hhhH-----HHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPT--VISY-----NIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
.+.|+.+|+.+.+.-..|. .... ...+..|.+.|.+++|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5567777766655422221 1111 1233456667777777777766655
No 398
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.53 E-value=75 Score=30.61 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=123.8
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTI 340 (534)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (534)
..|.....+++..+.....+.-...+..+|..-| .+...+..++.+|... ..++-..+|+++.+..+ .|...-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466778888899988888999999999998864 3667888899999888 66778899999988753 355555556
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCC--C---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 047017 341 LAAFCKNGNADQALEIFEKLSDVGCPP--N---VSSYNTMFSALWSSGDKIRALGMISEMLSK-GIEPDEITYNSLISCL 414 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 414 (534)
+..|.+ ++...+...|.++...-+|. + ...|..+... -..+.+..+.+...+... |..--...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 665555 88889999999887653321 1 1244444332 145677777777777654 3233344555555678
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
....++++|++++..+.+++ ..|...-..++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 88899999999999988764 2244444444443
No 399
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.40 E-value=80 Score=30.90 Aligned_cols=93 Identities=15% Similarity=0.006 Sum_probs=46.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHccC
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFC-KTRRINESIEVLAAMFE---KGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g 488 (534)
.+.+.|-+..|.++.+-+......-|+.....+|+.|+ +..+++--+++++.... ...-|+-..-..++..|.+..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~ 430 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKN 430 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcC
Confidence 34456666666666666665543334444444555443 34555555555554432 122344433345555555444
Q ss_pred C---HHHHHHHHHHHHHcCC
Q 047017 489 W---RAEAMELANALVSMHA 505 (534)
Q Consensus 489 ~---~~~A~~~~~~~~~~~~ 505 (534)
. .+.|...+.+++...|
T Consensus 431 ~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 431 EEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ChhhHHHHHHHHHHHHHhCc
Confidence 3 3445555555555544
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.27 E-value=24 Score=25.00 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=31.5
Q ss_pred HHhcCChhHHHHHHHHHHH----CCCCC----CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047017 47 SFRAGKFDESLYFIESMVA----NGCKP----DVVMCTKLIKKFFQERKSNKAVRVMEILEKYG 102 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 102 (534)
..+.|++.+|.+.+.+... .+... -..+...+.......|++++|...+++..+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5678888888766665443 22111 01223334455566677777777776665543
No 401
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.82 E-value=17 Score=22.49 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=7.2
Q ss_pred HhcCCHhHHHHHHHHHHHc
Q 047017 83 FQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~ 101 (534)
.+.|++++|.+..+.+.+.
T Consensus 12 ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 12 YKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHTT-HHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhh
Confidence 3344444444444444333
No 402
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.67 E-value=33 Score=24.35 Aligned_cols=55 Identities=13% Similarity=-0.093 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
+.+++....+....+.....|.-.|.+.|+.+.|.+-|+.-....|.+..-...|
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 3444444443333334444555566677777777777766666666655444443
No 403
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.63 E-value=39 Score=25.37 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=18.1
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 429 DMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.+...++.|++.+....+++|.+.+++..|..+|+-..
T Consensus 74 ~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 74 NLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33333444455444555555555555555555544443
No 404
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.59 E-value=16 Score=24.75 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=18.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 047017 381 SSGDKIRALGMISEMLSKGIEPD--EITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 381 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
..++.++|+..|...++.-..+. ..++..++.+++..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444321111 12333444444444544444433
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.05 E-value=10 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 047017 443 NIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
-.++.++...|++++|.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555554443
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=70.91 E-value=16 Score=34.38 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=65.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTV-ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 491 (534)
.+...+.++.|..++.++++. .||. ..|..=..++.+.+++..|+.=+.++++..+. -...|..=+.++...+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344566777777777777764 4543 33333346667777777777776676665421 2233333445566667777
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 492 EAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 492 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
+|...|+......|..+.+...+..|-.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 7888888887777777777666655543
No 407
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.12 E-value=67 Score=28.97 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHH
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEMLSKGI-EP--DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VISYNII 445 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l 445 (534)
..|.-=..-|.+.+++..|...|.+-++... .| +...|+.-..+-...|++..|+.=....... .|+ ...|..-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhh
Confidence 3455556677888889999999988776522 22 3456776666667788888888877777764 443 3344445
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 047017 446 ILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~ 466 (534)
..++....++.+|....++..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 566677777777777766653
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=1.3e+02 Score=30.51 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=121.3
Q ss_pred cccccCChHHHHHHHHHHHHcCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhC
Q 047017 203 GMCKKGMVGQAFQFVRSLESRGCQPD-----VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRD 277 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (534)
+....|+..++.+++.-.......+. -..+..+.-.+...| ....+.+...++....+....=..|.-.+...
T Consensus 366 GvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG--~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~m 443 (929)
T KOG2062|consen 366 GVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHG--RGITDYLLQQLKTAENEVVRHGACLGLGLAGM 443 (929)
T ss_pred ceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcC--ccHHHHHHHHHHhccchhhhhhhhhhccchhc
Confidence 55677788888888766544321111 122334443444444 44777776666553222222222333333333
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhcH--HHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhCCCHH
Q 047017 278 GKTEDAVDVLRAAKEKGLTPDAYSY--DPLISAYCKDG--RLDLAIEFLDYMISDGCLPDIVNYN--TILAAFCKNGNAD 351 (534)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 351 (534)
|. .-.++|+.+++.-...+..+- ..+.-+++-.| ..+.-.+++....+.. ...+.. .+.-++.--|+.+
T Consensus 444 GS--a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe 518 (929)
T KOG2062|consen 444 GS--ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQE 518 (929)
T ss_pred cc--ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhh
Confidence 32 223444444432111111111 11111222222 2222222333333221 111122 2333455566777
Q ss_pred HHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 352 QALEIFEKLSDVGCPPNVS--SYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVD 429 (534)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 429 (534)
+|..+.+++.... .|-.. -.-.++.+|+-.|+......++.-.... ...|..-.....-++.-..+++....+..-
T Consensus 519 ~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~l 596 (929)
T KOG2062|consen 519 DADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSL 596 (929)
T ss_pred hhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHH
Confidence 8888888887643 22111 1234556677777776666666655543 344555454455556667788888888777
Q ss_pred HHhCCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 430 MESTRFRPTVI--SYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 430 ~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
+.++ ..|-.. +--.|.-+|.-.|+ .+|+.+++-|..
T Consensus 597 Lses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 597 LSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred Hhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 6654 233222 22234444554554 678888888865
No 409
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.55 E-value=20 Score=27.32 Aligned_cols=71 Identities=15% Similarity=0.136 Sum_probs=46.0
Q ss_pred CCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 69 KPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYG--EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
.++..+...+.-++.+..+ ..+.+.+++.+.+.. .........|.-++.+.++++.+.++.+.+.+. .||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCCc
Confidence 4555566666666666554 445667777777632 223345555666777888888888888888876 5543
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.48 E-value=1.3e+02 Score=30.28 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 284 VDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
...++.+..+-...+......++..|.+.|-.+.+..+.+.+-..- ....-|...+..+.+.|+...+..+...+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334444433222344455566666777776666666666554331 11222334444445555554444443333
No 411
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.93 E-value=24 Score=32.68 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=31.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
.|.-+|.+.++++.|+...-+.+-++|....-...-+-|+..+.+|.+|.+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666555555666666666666654
No 412
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.52 E-value=16 Score=23.41 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 455 INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
.+...++++.+... .-|..-...++.++...|++++|.++++.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555443 23444455788999999999999999998865
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.64 E-value=1.7e+02 Score=30.92 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=121.8
Q ss_pred cceeccCcCcCcccccCCCCccCCCC-CCc-ccccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHH
Q 047017 3 TVVSCINPKSNERVRVSSSAETRPNT-HLL-SFDVKETQFMKLIKRSFRAGKFDESLYFIESMVANG---CKPDVVMCTK 77 (534)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ 77 (534)
+|+.|+....|..+-.-.......-. +.. ..--...-|..|+..|...|+.++|+++|.+..... -..-...+..
T Consensus 468 tLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ 547 (877)
T KOG2063|consen 468 TLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEK 547 (877)
T ss_pred HHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHH
Confidence 45567666665544443333331111 000 011244568999999999999999999999987632 0111223344
Q ss_pred HHHHHHhcCCH--hHHHHHHHHHHHcCCCC-hhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 78 LIKKFFQERKS--NKAVRVMEILEKYGEPD-VFAYN------------ALISGFCKANQIELANKVLDRLRSRGFSPDVV 142 (534)
Q Consensus 78 l~~~~~~~~~~--~~a~~~~~~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 142 (534)
++.-+-..+.. +-..++-.+....+|.. ..+|. ..+-.|......+-+..+++.+....-.++..
T Consensus 548 ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~ 627 (877)
T KOG2063|consen 548 IIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTL 627 (877)
T ss_pred HHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchH
Confidence 55555455544 45555555555443211 11111 12334556677788889999888765455666
Q ss_pred hHHHHHHHHHcC--------CCHHHHHHH--HHH---HHhC--CCCCC--------HhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 143 TYNIMIGSLCSR--------GMIESAFKV--FDQ---LLRD--NCKPT--------VITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 143 ~~~~l~~~~~~~--------g~~~~a~~~--~~~---~~~~--~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
..+.++..|.+. ++-+++.+. .+. +++. ...|. ...|....-.+.+.|+.++|+.++
T Consensus 628 lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iy 707 (877)
T KOG2063|consen 628 LHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIY 707 (877)
T ss_pred HHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHH
Confidence 666777666542 112233333 111 1111 11111 222333333344677777777766
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM 242 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (534)
-.. .++++.|..+....-+ ..+++...|..++..+...
T Consensus 708 v~~----L~d~~~A~~Yc~~~y~-~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 708 VHE----LDDIDAAESYCLPQYE-SDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred HHH----hcchhHHHHHHHHhcc-CCCcccHHHHHHHHHHhcc
Confidence 554 4555555555554433 2334555666666655544
No 414
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=84 Score=27.36 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=128.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH-
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN-GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKI- 386 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 386 (534)
+.+....+.|+.+...++..+ +.+..+|..--..+... .+..+-++.+.++.+.. |.|-..|..--......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCccc
Confidence 445566778888888888764 33444443322222222 24666677777777765 778888876655566667776
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCC-----hHHHHH
Q 047017 387 RALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK-TRR-----INESIE 460 (534)
Q Consensus 387 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~~A~~ 460 (534)
.-+++.+.|.... .-+-..|..--.++..-+.++.-+.+..++++..+. +...|+.-.-.... .|- .+.-+.
T Consensus 131 rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 7778888888743 235666777777777778899989999998887655 34445532211111 222 222334
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc-cC--CHHHHHHHHHHHH-HcCCCchHHHHHHHhhcch
Q 047017 461 VLAAMFEKGCKPNETTYVLLIEGIGY-GG--WRAEAMELANALV-SMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 520 (534)
+..+++.. ++.+...|+.|...+.. .| .......+...+. +.+..+|..+..+...|..
T Consensus 209 yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e 271 (318)
T KOG0530|consen 209 YTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAE 271 (318)
T ss_pred HHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHH
Confidence 45555554 34467778777666664 56 2445566666665 5566778888888777743
No 415
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=67.31 E-value=36 Score=31.81 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCCCCHhhHHHHHHHHHh-------cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047017 67 GCKPDVVMCTKLIKKFFQ-------ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP 139 (534)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 139 (534)
+..|..+.....+..+.. ....-+|.-+++......|.+...-..++..|...|-.+.|.+.|..+.-..++-
T Consensus 171 e~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~ 250 (365)
T PF09797_consen 171 ESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQL 250 (365)
T ss_pred ccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHH
Q ss_pred ChhhHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 140 DVVTYNIMIGSLCSRGMIESAF-KVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
|.-.+..+-+ +...|....+. ..++.....- ..+.......+....+.|.+.+..+..+
T Consensus 251 DTL~h~~~~r-~~~~~~~~~~~~~~~~~~~~fy-~~~~~~~~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 251 DTLGHLILDR-LSTLGPFKSAPENLLENALKFY-DNSEKETPEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHhHHHHHHH-HhccCcccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchhHHHHHH
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.18 E-value=81 Score=29.66 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 047017 341 LAAFCKNGNADQALEIFEKLSDVGCPPNVS--SYNTMFSAL--WSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 341 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~~~~~~a~~~~~~~~~~ 398 (534)
+..+...+++..|.++++.+... ++++.. .+..+..+| ...-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999886 565555 444454544 4567888999999987764
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=65.49 E-value=2e+02 Score=31.03 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHhcC--CHhHHHHHHHHh
Q 047017 176 VITYTILIQATMLEG--QTDKAMKLLDEM 202 (534)
Q Consensus 176 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~ 202 (534)
...+..++.+|.+.+ ++++|+....++
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l 840 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKEL 840 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344566777777776 777777777665
No 418
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.53 E-value=92 Score=26.40 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 178 TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-----DVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 178 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
.+..++..|...|+.+.....++. |...|.+.......| .......++....+.|+.++|.+.|
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~-----------Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRK-----------ALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHH-----------HHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455566667777775555555443 455555544433222 1234455666778888888888888
Q ss_pred HHHHHCC
Q 047017 253 TEMISRG 259 (534)
Q Consensus 253 ~~~~~~~ 259 (534)
..++..+
T Consensus 189 s~vi~~~ 195 (214)
T PF09986_consen 189 SRVIGSK 195 (214)
T ss_pred HHHHcCC
Confidence 8888764
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=63.47 E-value=30 Score=30.56 Aligned_cols=65 Identities=8% Similarity=0.029 Sum_probs=32.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+.|+.++|..+|+.++...+. ++.++..+.......++.-+|-.+|-+++...|.+.+++....+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 345555555555555554322 34444444444444455555555555555555555544444333
No 420
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.45 E-value=35 Score=29.71 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 111 ALISGFCKANQIELANKVLDRLRSR----GF-SPDVVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.++..|.+.|++++|.++|+.+... |- .+...+...+..++...|+.+....+.-+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4445555555555555555554311 10 11233344455555556665555554433
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.05 E-value=55 Score=25.45 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
.......++.....|++.-|.++.+.++..+|.+..+....+.+|.+++.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344455566677788899999999999999998888888888888776654
No 422
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.86 E-value=1.6e+02 Score=28.99 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHhCC-----------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH
Q 047017 154 RGMIESAFKVFDQLLRDN-----------CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES 222 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 222 (534)
...+++|...|.-..... .|-.+.+...+..++...|+.+.+..++.+. +-.++.+..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~-----------Ly~~d~a~h 319 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG-----------LYVFDRALH 319 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH-----------HHHHHHHhc
Confidence 445677777777665432 1333455666777888899999888887764 333443333
Q ss_pred cCCCC-------------CHhhHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hCCChhHHHH
Q 047017 223 RGCQP-------------DVISYNML---LRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC-RDGKTEDAVD 285 (534)
Q Consensus 223 ~~~~~-------------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 285 (534)
..+.| |...|..+ +..+.+.|-+..|.++-+.+.+....-|+.....+|..|+ +..+++=.++
T Consensus 320 p~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~ 399 (665)
T KOG2422|consen 320 PNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIE 399 (665)
T ss_pred cccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHH
Confidence 22221 22223222 3455778999999999999998865557777777777764 5677888888
Q ss_pred HHHHHHHCC---CCCCHhcHHHHHHHHHhcCC---HHHHHHHHHHHHHC
Q 047017 286 VLRAAKEKG---LTPDAYSYDPLISAYCKDGR---LDLAIEFLDYMISD 328 (534)
Q Consensus 286 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 328 (534)
+++.....+ .-|+-.--.+++..|..... -+.|...+.++...
T Consensus 400 ~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 400 LSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred HHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 887775432 23444434455566665544 45677777777765
No 423
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.44 E-value=47 Score=34.20 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 047017 82 FFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 161 (534)
....|+.+.|++....+. +...|..|+....++|+.+-|...|++.... ..|--.|.-.|+.++-.
T Consensus 653 aLe~gnle~ale~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLS 718 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHH
Confidence 345677776666555433 5677888888888888888777777776532 23333345566666665
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh--------cccccCChHHHHHHHHHHHH
Q 047017 162 KVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM--------GMCKKGMVGQAFQFVRSLES 222 (534)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~a~~~~~~~~~ 222 (534)
++..-+...+ |..+ ......-.|+.++-.+++... .....|.-++|.++.++...
T Consensus 719 Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHHHhhcc
Confidence 5555443221 2111 111112345566555555544 22234445555555555444
No 424
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.41 E-value=28 Score=30.81 Aligned_cols=77 Identities=4% Similarity=-0.013 Sum_probs=44.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTK-LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
++..|...+....+.|.+.+.-.+|.++++.. |.+.+.|.. -..-+...++++.++.+|......++.++..|....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 45555555555555666666666666666553 555555543 223344556666666666666666666665555443
No 425
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.04 E-value=1.1e+02 Score=26.28 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH------HHHHHHHhCCChhHHHHHHHHHHHC
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYS------ILISSLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (534)
.+...-...+++.+|+++|+++....+..+..-|. .-.-++....|.-.+...++...+.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 33444456788888888888887765443322222 1112222335555555555555554
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=60.81 E-value=19 Score=31.82 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMC 75 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 75 (534)
.+..|+..|+..++.||.++|+++++++.+.|...-..++
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4455679999999999999999999999988854433333
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=60.53 E-value=1.6e+02 Score=32.25 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=97.1
Q ss_pred HHHHHhcCCHhHHHH------HHH-HHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---C--CCC--CChhhH
Q 047017 79 IKKFFQERKSNKAVR------VME-ILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRS---R--GFS--PDVVTY 144 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~------~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~--~~~--~~~~~~ 144 (534)
.+.....|.+.+|.+ +++ .+....+.....|..+...+-+.|+.++|...-.+..- + |.. -+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455666666666 665 34444477778889999999999999998876554321 1 222 234556
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHH
Q 047017 145 NIMIGSLCSRGMIESAFKVFDQLLRD-----N--CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFV 217 (534)
Q Consensus 145 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~ 217 (534)
..+.......+....|...+.+.... | .||...+++.+-..+...++.+.|+++++.+ ..+-
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A-----------~a~~ 1087 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA-----------LAKN 1087 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH-----------HHHH
Confidence 66666666666777777777666542 1 2555556666666666668888888887765 1111
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 218 RSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+.+.....-.+..++..+.+.+...+++..|+...
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111224455666666666666666555443
No 428
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.11 E-value=77 Score=29.87 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 178 TYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 178 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
+...|++.++-.||+..|+++++.+...+.+ ++. .-..-...++..++-+|.-.+++.+|.+.|..++-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~-------l~~----~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKG-------LYT----KVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccch-------hhc----cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999887432221 111 11223556788888899999999999999988753
No 429
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.04 E-value=22 Score=29.99 Aligned_cols=57 Identities=9% Similarity=-0.028 Sum_probs=28.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047017 48 FRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD 105 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 105 (534)
.+.++.+.|.+++.+++..- +.....|..+.....+.|+++.|.+.+++..+.+|++
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34455555555555555432 3344445555555555555555555555555544443
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.66 E-value=29 Score=30.70 Aligned_cols=74 Identities=9% Similarity=-0.052 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVL-LIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
|+..|...+..-.+.|.+.+.-.++.+.++.. +.|...|.. -..-+...++.+.++.++.+.++.++.+|..|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 44445444444444455555555555555543 223333332 222334455666666666666666666665444
No 431
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.51 E-value=76 Score=24.10 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 457 ESIEVLAAMFEKGCKP-NETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.+.++|+.|...|+-. -...|...+..+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6677777777655443 3555666677777777777777777654
No 432
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.64 E-value=2.2e+02 Score=29.25 Aligned_cols=103 Identities=8% Similarity=0.083 Sum_probs=59.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEP--DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (534)
+..+.+.+.+++|+...+......+. -......++..+.-.|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45566777788887776665544322 3456667777777778888887777777643 55556655555555554
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
......+ +.......++..|..++..+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3332221 1111112344556666665544
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=58.30 E-value=54 Score=27.16 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=23.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
.|++.++..++.++...|+.++|....+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777777777777777776654
No 434
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=57.93 E-value=1.2e+02 Score=25.96 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=18.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCch
Q 047017 486 YGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 486 ~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
..++...|..+++++.++++...
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 44578899999999999987644
No 435
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.29 E-value=1.8e+02 Score=27.80 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh
Q 047017 243 GKWEEGEKLMTEMISRGLEPNV 264 (534)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~ 264 (534)
.+.+.|+.++..|++.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 5566666666666666555443
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.09 E-value=2.9e+02 Score=30.09 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPD----VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTIL 182 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 182 (534)
..|...++.+-+.+-.+.+.++-..+++. ++++ ..+++.+.+.....|.+-+|...+-.-... .....+...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRql 1060 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHH
Confidence 34667778888888888888887777665 1222 345666777777788887776655432221 2223466777
Q ss_pred HHHHHhcCCHhHHHHHHHHhcccccCChHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 183 IQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQ-FVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 183 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+-.+..+|..+.-.+ +.--|..++... +++.......-.....|+.|-..+...+++.+|--+.
T Consensus 1061 vivLfecg~l~~L~~------fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1061 VIVLFECGELEALAT------FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHhccchHHHhh------CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 778888888764433 223344555555 3333333322223345665656667788888776543
No 437
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.08 E-value=1.6e+02 Score=27.00 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
.++...++..++.. -|+ ...|-.+++.....|.++..+.+|++++..|..|-...-..++..+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34677777777664 344 34567777888888999999999999999999988887777777765
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.54 E-value=26 Score=31.01 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
..|....+.||+++|+.+++++.+.|+.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4444444444444444444444444443
No 439
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=55.98 E-value=80 Score=23.25 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 493 AMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
+.+.+.+...+.|.....+..++.-+....-|+++..
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4455566666666666666666666666666665544
No 440
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=55.62 E-value=2.5e+02 Score=28.92 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC------------ChhhHHHHHHHH
Q 047017 384 DKIRALGMISEML-SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRF-RP------------TVISYNIIILGF 449 (534)
Q Consensus 384 ~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~------------~~~~~~~l~~~~ 449 (534)
..++....+.... ..|+..+......++... .|++..+..+++++...+. .. +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 3445555555444 457777777777776553 6999999999988765421 11 111222333333
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC
Q 047017 450 CKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
..++...++.+++++...|..+
T Consensus 257 -~~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 -INQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred -HcCCHHHHHHHHHHHHHhCCCH
Confidence 3477777777777777776643
No 441
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.57 E-value=1.5e+02 Score=26.18 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=18.6
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 174 PTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 174 ~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
-++.....++..|.+.|++.+|...|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356677788888888888888877664
No 442
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.65 E-value=3.1e+02 Score=29.69 Aligned_cols=133 Identities=9% Similarity=0.114 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVA-NG--CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+..-....++.++..++|.+|..+.++-.- .+ ...++..+..-+..+.++=+--+-+.+|=.-++...-....|...
T Consensus 693 PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~ 772 (928)
T PF04762_consen 693 PRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT 772 (928)
T ss_pred cHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc
Confidence 334456778889999999999988766321 11 123455555545555443222222333322222111111112111
Q ss_pred H------------HHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCC--CHHHHHHHHHHHHhC
Q 047017 113 I------------SGFCKANQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRG--MIESAFKVFDQLLRD 170 (534)
Q Consensus 113 ~------------~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~ 170 (534)
. ......++.+..-+.+...... ..+ ..-...++.+|++.+ ++++|+.+..++.+.
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~--~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 773 YPPSSEAQPNSNSSTASSESKVNKICDAIRKALEK--PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccccccCCCccccHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1 1111223334444444333331 223 344457788888888 889999999888865
No 443
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.53 E-value=38 Score=29.97 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=42.6
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
..+.|+.++|.++|+-++.+.|.+++++..++......++.-+|-+.+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 45789999999999999999999999999999888877777777666544
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.34 E-value=85 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366666666666777777776666655
No 445
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.98 E-value=88 Score=24.49 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=20.7
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 394 EMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 3344444444332 233444444444455555555555544333333
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.83 E-value=1.5e+02 Score=25.68 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHhHHHHHHHHHHHcC
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFF-QERKSNKAVRVMEILEKYG 102 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~ 102 (534)
...+++..-+.|++++....+.++...+...+..-.+.+..+|- .-|....+.+.+..+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 67 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKE 67 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhh
Confidence 45577888899999999999999999877777777777766662 2344555666666655543
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.32 E-value=1.8e+02 Score=26.41 Aligned_cols=97 Identities=23% Similarity=0.151 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCH----H
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDME----STRFRPTVISYNI-IILGFCKTRRINESIEVLAAMFEKGCKPNE----T 475 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~ 475 (534)
..+......|++-|+-+.|.+.+.+.. ..|.+.|...+.. +.-.|....-..+-++..+.+.+.|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 455566677888888888887776553 3355555554432 223333333345555555566666644332 2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 476 TYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 476 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
+|..+- |....++.+|-.+|-..+.-
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 333332 23344677777776665543
No 448
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.44 E-value=78 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=21.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHH
Q 047017 276 RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLA 318 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 318 (534)
..|+.+.|.+++..+. . .+..|..++.++...|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-r----g~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-Q----KEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-c----CCcHHHHHHHHHHHcCchhhh
Confidence 3456666666666655 3 233556666666665554444
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=52.20 E-value=70 Score=24.26 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHH
Q 047017 125 ANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFD 165 (534)
Q Consensus 125 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 165 (534)
..++|..|...|+-.. +..|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555555544322 2334444555555566666555554
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.66 E-value=1.9e+02 Score=26.21 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..+++...+.++..+-++.-....+.++.-..+|..+.+- ..--..+|.++|++..+. ...+|+ +..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka----~e~~yr-------~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA----GETIYR-------QSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH----HHHHHh-------hHH
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047017 156 MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNML 235 (534)
Q Consensus 156 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (534)
....--...+.+.+.+...-+..-..|.-+..+.|+..+|.+.++.+ +.+...-.-......+
T Consensus 255 q~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL-----------------~ke~pl~t~lniheNL 317 (556)
T KOG3807|consen 255 QCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL-----------------MKEFPLLTMLNIHENL 317 (556)
T ss_pred HHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------hhhccHHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+.++....-+.+...++-+.-+...+-+......-.
T Consensus 318 iEalLE~QAYADvqavLakYDdislPkSA~icYTaA 353 (556)
T KOG3807|consen 318 LEALLELQAYADVQAVLAKYDDISLPKSAAICYTAA 353 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHH
No 451
>PRK09857 putative transposase; Provisional
Probab=51.15 E-value=1.7e+02 Score=26.30 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 047017 109 YNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT 175 (534)
Q Consensus 109 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 175 (534)
+..++....+.++.++..++++.+.+. .+.......+++.-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444454445566666666666666554 222333444555666666666777788888887776544
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.12 E-value=1.1e+02 Score=26.64 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 374 TMFSALWSSGDKIRALGMISEMLSK----GI-EPDEITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 374 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
.++.-|...|++++|.++|+.+... |. .+...+...+..++.+.|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3445555555565555555554311 11 122233344444555555555444443
No 453
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=2.9e+02 Score=28.32 Aligned_cols=122 Identities=23% Similarity=0.173 Sum_probs=78.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEI--TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
-++..-|+-+.|..+..+|.... .|-.. -...+..+|+-.|+.....+++.-...- ...|..-...+.-++.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecC
Confidence 44556677788889999888652 33221 1234556777888877666666555432 33344444455556667788
Q ss_pred hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 455 INESIEVLAAMFEKGCKPNE--TTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
++....+.+-+.+. ..|.. .+-..|.-+|.-.| ..+|+.+++.|..
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 88888887766653 34433 34445666777777 5788999998887
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.88 E-value=2.2e+02 Score=26.77 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---------CCCC
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRG--FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---------NCKP 174 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 174 (534)
...+.-+...|..+|+++.|++.|.+...-- ....+..|..+|.+-.-.|+|........+.... .+++
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4566677777777777777777777754321 1112445556666666666666555555444432 2355
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 175 TVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
...++..+.....+ ++..|.+.|-..
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhC
Confidence 56666666665444 666666666554
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=50.67 E-value=43 Score=18.61 Aligned_cols=18 Identities=22% Similarity=0.051 Sum_probs=9.3
Q ss_pred HHHHHHHccCCHHHHHHH
Q 047017 479 LLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~ 496 (534)
.+.-.+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555666666666
No 456
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.14 E-value=2.2e+02 Score=26.61 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-hCCChhHHHHHHHHHHH
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC-RDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 292 (534)
+..+.+.|-+..|.++.+-+...+..-|+.....+|..|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3456777888888888888877755446666666666553 55666666666665544
No 457
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.06 E-value=1.9e+02 Score=25.74 Aligned_cols=139 Identities=16% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHH
Q 047017 391 MISEMLSKG--------IEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYNIIILGFCKTRRINESIEV 461 (534)
Q Consensus 391 ~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 461 (534)
++.-+.+.| ++.|...++.++.- ...+.++--+-+++..+. |-.--...+..+...|++.++.+.+.+.
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~ 137 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEW 137 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHH----cCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHcCCCch---HHHHHHHhhcchHHHHHHhhhhh
Q 047017 462 LAAMFE----KGCKPNETTYV-LLIEGIGYGGWRAEAMELANALVSMHAISR---DTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 462 ~~~~~~----~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
..+..+ .|.+.|..... .+.-.|....-.++-++..+.+++.|..-. ..-..-+.......++++|..++
T Consensus 138 ~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll 215 (412)
T COG5187 138 MRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILL 215 (412)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHH
No 458
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.99 E-value=37 Score=28.72 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 414 LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
....++.+.+.+++.+....- +.....|-.+...-.+.|+++.|...+++.++.+
T Consensus 5 ~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 345667777777777776542 2245566667776777777777777777777654
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.46 E-value=2.2e+02 Score=31.27 Aligned_cols=162 Identities=14% Similarity=0.062 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhcCChhHHHH------HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH-------HHcC-CC
Q 047017 39 QFMKLIKRSFRAGKFDESLY------FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEIL-------EKYG-EP 104 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~-~~ 104 (534)
.+..-.+.....|.+.+|.+ +++.....-.+.....|..+...+-+.|+.++|...-... ...+ +.
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34455566777788887777 6664433333556777888888999999999998765443 2233 44
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----C-
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSR-----GF-SP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN----C- 172 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~- 172 (534)
+...|..+...+...++...|...+.+.... |- .| ...+++.+-..+...++++.|.+..+.+.... .
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 5566777777777777888888887776543 11 23 34444555555566688999999988887532 1
Q ss_pred --CCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 173 --KPTVITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 173 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
-.+..++..+.+.+...+++..|....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHh
Confidence 2344567777777777777776665543
No 460
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.06 E-value=1.8e+02 Score=25.21 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHccCCHHHHHHHHHHHHHc
Q 047017 456 NESIEVLAAMFE---KGCKPNETTYVLLIE-----GIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 456 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~ 503 (534)
+.|...|+++.+ ..++|...++..++- .|--.|+.++|.++.+++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455666665554 225666555544433 234679999999888877663
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=48.47 E-value=1.2e+02 Score=23.05 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 124 LANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.+.++|..|...|+... +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666544332 44455666666666666666666654
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.02 E-value=2e+02 Score=25.50 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=90.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHHHHHhCCChhHHHHHHHHHHH----CCCCCCHhcHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNVV-------TYSILISSLCRDGKTEDAVDVLRAAKE----KGLTPDAYSYD 303 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 303 (534)
+.+-..+.+++++|+..+.+++..|+..+.. +...+...|...|+.....+......+ -.-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3344455667777777777777666554433 344556666677666554444433221 11011222333
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHH----hhCCCCCCHhhHH
Q 047017 304 PLISAYCK-DGRLDLAIEFLDYMISDGCLP-----DIVNYNTILAAFCKNGNADQALEIFEKL----SDVGCPPNVSSYN 373 (534)
Q Consensus 304 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~ 373 (534)
.++..+-. ...++.-+.+....++..... ....-..++..+.+.|.+.+|+.+...+ .+..-.++..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 33333322 223444444444333321110 1122234566777888888887755543 3333233333222
Q ss_pred HH-HHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 047017 374 TM-FSALWSSGDKIRALGMISEMLSK----GIEPDEITYNSLISC--LCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 374 ~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 432 (534)
.+ -.+|....+..++..-+..+... -.+|-...--.++.+ .+...++..|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 22 23444445555554444433321 233333333333332 2234556666666655543
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.90 E-value=1.5e+02 Score=24.21 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 047017 112 LISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
.+..|.+.|.+++|.+++++..+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456666666666666666654
No 464
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.73 E-value=1.8e+02 Score=24.83 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=49.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEP---DEITY--NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI 440 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (534)
.+...-++.|+--|.-...+.+|.+.|..- .|+.| +..++ ..-+......|+.++|.+.+...-..-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 445555666666666666666666655432 23333 23332 234555667788887777776653221222322
Q ss_pred hHHHHHH----HHHhcCChHHHHHHHHHH
Q 047017 441 SYNIIIL----GFCKTRRINESIEVLAAM 465 (534)
Q Consensus 441 ~~~~l~~----~~~~~g~~~~A~~~~~~~ 465 (534)
.+-.+.. =..+.|..++|+++.+.=
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222211 124556666666665543
No 465
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=46.64 E-value=63 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=16.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 466
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.41 E-value=1.9e+02 Score=24.70 Aligned_cols=65 Identities=17% Similarity=0.224 Sum_probs=34.2
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHhhHH--HHHHHHHhcCCHhHHHHHHHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKP---DVVMCT--KLIKKFFQERKSNKAVRVMEILE 99 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 99 (534)
..+....++.|+-.|+-...+.+|...|..-. ++.+ +...+. .-+......|+.++|......+.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 34555566666666666666666666664432 2222 223222 23344466666666666655544
No 467
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.80 E-value=2.9e+02 Score=26.75 Aligned_cols=389 Identities=11% Similarity=0.023 Sum_probs=195.8
Q ss_pred hHHHHHHHHH-hcCChhHHHHHHHHHHHC--CCCC----CHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCh----
Q 047017 39 QFMKLIKRSF-RAGKFDESLYFIESMVAN--GCKP----DVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDV---- 106 (534)
Q Consensus 39 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~---- 106 (534)
+-..+...+. -..+++.|...++.+... .++. ...++..+...+.... .+..+..++++..+.....+
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 3334443333 467899999999886542 1111 1234556666776666 78889999998887753333
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH------HHHcCCC---HHHHHHHHHHHHhCCCCCCHh
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG------SLCSRGM---IESAFKVFDQLLRDNCKPTVI 177 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~---~~~a~~~~~~~~~~~~~~~~~ 177 (534)
.....++....-..++..|.+++.--.+. -.+-...|..++- ......+ +..+......+.+.. .+|..
T Consensus 128 kllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~-~sdk~ 205 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNI-SSDKT 205 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcc-CCChH
Confidence 23445667777778899998885432221 1222233332221 1222223 344445555555543 44442
Q ss_pred h------H--HHHHHHHHhcCCHhHHHHHHHHhc------ccccCChHHHH------HHHHHHHHcCCCCCHhhHHHHHH
Q 047017 178 T------Y--TILIQATMLEGQTDKAMKLLDEMG------MCKKGMVGQAF------QFVRSLESRGCQPDVISYNMLLR 237 (534)
Q Consensus 178 ~------~--~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~a~------~~~~~~~~~~~~~~~~~~~~l~~ 237 (534)
- | ..-+..|...|+...+...++++. .....-.++.+ ..+..+.+. ....-+|.....
T Consensus 206 ~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpke--qicaLV~l~tv~ 283 (629)
T KOG2300|consen 206 QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKE--QICALVYLVTVI 283 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHh--hhHhhhhhhHHh
Confidence 2 1 112233555677777766666550 00000000000 000000000 000111111111
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCC-Chh--------hHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCH----
Q 047017 238 TLLNMGKWEEGEKLMTEMISR----GLEP-NVV--------TYSILISSLCRDGKTEDAVDVLRAAKEKG-LTPDA---- 299 (534)
Q Consensus 238 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---- 299 (534)
.-.-.|-+++|.++-++++.. ...+ ... +...++.+-.-.|++.+|++-+..|.+.- -.|.+
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 112345555665555444332 1111 111 12233444456799999999998888742 12221
Q ss_pred ---hcHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHh--
Q 047017 300 ---YSYDPLISA-YCKDGRLDLAIEFLDYMISDGCLPDIVNY--NTILAAFCKNGNADQALEIFEKLSDVG-CPPNVS-- 370 (534)
Q Consensus 300 ---~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-- 370 (534)
.....++.. +...+.++.|..-|..+.+.-...|...+ ..++..|.+.++.+.-.++++.+-..+ .+....
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 122333333 45578899999888877765333344332 345667888888777777776653221 111111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 371 ---SYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE-----ITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 371 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
.+-.-.-.....+++.+|..++.+-++..-..|. -....+...+...|+..++.+.+.-..
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 1111122235678999999998877654212222 223344455667888888888776543
No 468
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=45.52 E-value=1.4e+02 Score=23.41 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHC
Q 047017 281 EDAVDVLRAAKEK 293 (534)
Q Consensus 281 ~~a~~~~~~~~~~ 293 (534)
-.|.++++.+.+.
T Consensus 37 ~sAeei~~~l~~~ 49 (145)
T COG0735 37 LSAEELYEELREE 49 (145)
T ss_pred CCHHHHHHHHHHh
Confidence 3344444444333
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=43.16 E-value=89 Score=20.09 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHH-----HHhcCCHhHHHHH
Q 047017 46 RSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKK-----FFQERKSNKAVRV 94 (534)
Q Consensus 46 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~ 94 (534)
.+.+.|+|=+|-++++.+-.....+....+..+++. ..+.|+...|..+
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456677777777777776544323344444444442 2345555555544
No 470
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.08 E-value=2.6e+02 Score=25.51 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 047017 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCR------DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 457 (534)
-.+++..++++....+. |.+......|.++.. .-+|.....+|+.+......| .++.|..+ +..+..-++.
T Consensus 271 lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHHh
Confidence 35677777777776653 677666666655432 346777777777776653332 33344332 3344444566
Q ss_pred HHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 458 SIEVLAAMFEKGCKPNETT-YVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
++...+-+...+--.+... +..=...+.+.|+.++|...|++++.+-.+..+..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 6777766655421112222 22345567788999999999999988877666443
No 471
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.60 E-value=1.9e+02 Score=25.91 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 356 IFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
+|+.+.+.++.|.-.++..+.-.+.+.=.....+.+|+.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444444444444444
No 472
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=42.53 E-value=2.2e+02 Score=27.33 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCC
Q 047017 191 QTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGK-----------WEEGEKLMTEMISRG 259 (534)
Q Consensus 191 ~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~ 259 (534)
++++|.++.+.+ |....+...+....+.|. +++-.++++.+.+.|
T Consensus 29 d~~eav~y~k~~------------------------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g 84 (480)
T TIGR01503 29 DLQDAVDYHKSI------------------------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG 84 (480)
T ss_pred CHHHHHHHHHhC------------------------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH------CCCCCCHhcHHHHHHHHHh-------cCCHHHHHHHHHHHH
Q 047017 260 LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE------KGLTPDAYSYDPLISAYCK-------DGRLDLAIEFLDYMI 326 (534)
Q Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~ 326 (534)
.......-+..|.+.+++++|...+++-.+ +|++.-..-+...=..... ..-...+..+++.+.
T Consensus 85 ---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGtpDarlL~e~~~ 161 (480)
T TIGR01503 85 ---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGTPDARLLAEIIL 161 (480)
T ss_pred ---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCCCcHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 327 SDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL-------SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG 399 (534)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 399 (534)
..|+....----+.---|.+.=..++++..|+.+ .+.|++.|.++|..|...+
T Consensus 162 a~G~~a~EGG~ISYnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL-------------------- 221 (480)
T TIGR01503 162 AGGFTSFEGGGISYNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL-------------------- 221 (480)
T ss_pred HcCCCccCCCcceeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc--------------------
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 047017 400 IEPDEITYNSLISCLCRDGM 419 (534)
Q Consensus 400 ~~~~~~~~~~l~~~~~~~g~ 419 (534)
++|....-..++.++....+
T Consensus 222 vPPsisiav~ilE~Lla~eq 241 (480)
T TIGR01503 222 VPPSISNAIGIIEGLLAAEQ 241 (480)
T ss_pred cChHHHHHHHHHHHHHHHHc
No 473
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=42.04 E-value=1.4e+02 Score=21.92 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=52.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 49 RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
.....++|..+.+.+...+ .....+-...+..+...|++++| +..-.....||...|..+. -.+.|--+++...
T Consensus 18 G~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~ 91 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALC--AWKLGLASALESR 91 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHH--HHhhccHHHHHHH
Confidence 4567889999999988875 23333444455677899999999 2222222256666665544 4588999999998
Q ss_pred HHHHHhCC
Q 047017 129 LDRLRSRG 136 (534)
Q Consensus 129 ~~~~~~~~ 136 (534)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 88887665
No 474
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.61 E-value=4.2e+02 Score=27.38 Aligned_cols=197 Identities=18% Similarity=0.209 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC------CCH-hcHHHHHHHHHhcCCH
Q 047017 246 EEGEKLMTEMISRGLEPN---VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT------PDA-YSYDPLISAYCKDGRL 315 (534)
Q Consensus 246 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~-~~~~~l~~~~~~~~~~ 315 (534)
++-...+.+|..+--.|+ ..+...++-.|....+++..+++.+.+....-. ++. ..|...++--.+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 344456777776533444 445666777788888899888888888764210 011 1222233333446778
Q ss_pred HHHHHHHHHHHHCC--CCCCHHH-----HHH--HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-H
Q 047017 316 DLAIEFLDYMISDG--CLPDIVN-----YNT--ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD-K 385 (534)
Q Consensus 316 ~~a~~~~~~~~~~~--~~~~~~~-----~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 385 (534)
++|+...-.+++.. +.||... |.- +...|...+..+.|.++|++..+. .|+...-..+...+...|. +
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhc
Confidence 88888777766543 3344322 111 112233445667788888888764 4444332222222222221 1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047017 386 IRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAM 465 (534)
Q Consensus 386 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 465 (534)
+...+ +...| ..|-..+.+.|..+...++|+-. +| +.+-.-++++.+|+..-+.|
T Consensus 338 ens~E----lq~Ig--------mkLn~LlgrKG~leklq~YWdV~----------~y---~~asVLAnd~~kaiqAae~m 392 (1226)
T KOG4279|consen 338 ENSLE----LQQIG--------MKLNSLLGRKGALEKLQEYWDVA----------TY---FEASVLANDYQKAIQAAEMM 392 (1226)
T ss_pred cchHH----HHHHH--------HHHHHHhhccchHHHHHHHHhHH----------Hh---hhhhhhccCHHHHHHHHHHH
Confidence 11111 11111 11222344666666655555322 22 22334456777777777777
Q ss_pred HHcC
Q 047017 466 FEKG 469 (534)
Q Consensus 466 ~~~~ 469 (534)
.+..
T Consensus 393 fKLk 396 (1226)
T KOG4279|consen 393 FKLK 396 (1226)
T ss_pred hccC
Confidence 7653
No 475
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.11 E-value=2.9e+02 Score=25.41 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 121 QIELANKVLDRLRSRGFSPDV----VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
-.++...++..+... -|++ .-|..+++.....|.++.++.+|++++..|..|-...-..++..+.
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346778888877766 4553 4577888888899999999999999999998888777777777654
No 476
>PRK09857 putative transposase; Provisional
Probab=40.59 E-value=2.8e+02 Score=25.02 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+..++......++.++..++++.+.+. .+.......+++.-+.+.|.-++++++..++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~m 266 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIM 266 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666666554 2333444455666666667666666655555
No 477
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.52 E-value=2.5e+02 Score=24.59 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred cccccCChHHHHHHHHHHHHc---C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCh----hhHHHHHH
Q 047017 203 GMCKKGMVGQAFQFVRSLESR---G--CQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-GLEPNV----VTYSILIS 272 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~ 272 (534)
...+.+++++....+.++... . ..-+..+.|.++.......+.+-....++.-+.. .-.-+. .|-+.+..
T Consensus 74 I~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 74 INFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGK 153 (440)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhh
Confidence 344555666655555554321 0 0112334555555555455555555555433221 001122 23356778
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCC----CC-------HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 047017 273 SLCRDGKTEDAVDVLRAAKEKGLT----PD-------AYSYDPLISAYCKDGRLDLAIEFLDYMISDG-CLPDIVNYNTI 340 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l 340 (534)
.|...+.+.+..++++++....-. .| ...|..-+..|....+-.+...++++.+... ..|.+.....+
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvI 233 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVI 233 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHH
Confidence 888889999999999888765211 11 2356666778888888778788888776532 23444443333
Q ss_pred H----HHHHhCCCHHHHHHHHHHH----hhCCCCCCHhh--HHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 341 L----AAFCKNGNADQALEIFEKL----SDVGCPPNVSS--YNTMFSALWSSG--DKIRALGMISEMLSKGIEPDEITYN 408 (534)
Q Consensus 341 ~----~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~--~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (534)
- .++.+.|++++|..-|-++ -+.|.|-.... |..++..+.+.| -++. +++.-..-.|.....+
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMT 308 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMT 308 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHH
Confidence 2 2355678888886543333 23442222222 233344444433 1110 0001111234555677
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVD 429 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~ 429 (534)
.++.+|.. ++..+-..++..
T Consensus 309 nlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 309 NLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHhc-ccHHHHHHHHHh
Confidence 88888754 555555555443
No 478
>PRK12798 chemotaxis protein; Reviewed
Probab=40.02 E-value=3.3e+02 Score=25.80 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHcCCCHHHHHHHHHHHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVVTYNIMIGS-LCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~ 168 (534)
.|+..++.+.|..+.....++....+..|+.+ .....+..+|+++|+...
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 34444444444444433333344444443332 222334444555444443
No 479
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.83 E-value=1.3e+02 Score=21.03 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 047017 122 IELANKVLDR 131 (534)
Q Consensus 122 ~~~a~~~~~~ 131 (534)
.+.|.+++..
T Consensus 52 ~~~ar~LL~~ 61 (88)
T cd08819 52 ESGARELLKR 61 (88)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=39.42 E-value=1.9e+02 Score=24.10 Aligned_cols=63 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEK 100 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 100 (534)
.....++..++..|+++.|-+.|.-+++.....-...|..-+..+.+.+......+.++.+..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 481
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.30 E-value=41 Score=25.65 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=19.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRT 238 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (534)
..|.-.+|..+|.+|.+.|.+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555666677777788887776 36666543
No 482
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.19 E-value=4.8e+02 Score=27.43 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCChhhHHHHHHHHH
Q 047017 385 KIRALGMISEML-SKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRF-------------RPTVISYNIIILGFC 450 (534)
Q Consensus 385 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~ 450 (534)
.++....++.+. ..++..+......+... ..|++..|+.++++....+. ..+...+..++.+ .
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-L 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-H
Confidence 445566666654 34666677666655544 47999999999887654321 1122223333333 3
Q ss_pred hcCChHHHHHHHHHHHHcCCC
Q 047017 451 KTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~ 471 (534)
..|+..+++.+++++...|+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~ 277 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLS 277 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCC
Confidence 346777777777777766654
No 483
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.59 E-value=41 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=18.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
..|.-..|..+|.+|++.|-+||. |..|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345566677777777777766653 344443
No 484
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.15 E-value=5.1e+02 Score=27.37 Aligned_cols=267 Identities=12% Similarity=0.063 Sum_probs=121.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI 157 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 157 (534)
+=+.|...|++++|+++-+.-.. .-..++..-+..|.+.+++..|.++|.++.+ .+..+.--+....+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~---~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~ 432 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPD---ALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQE 432 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCH
Confidence 44567777888887776543210 0123455556777778888888888877742 233333334444444
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHH-----HHHHHH-hcCCHh----HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC
Q 047017 158 ESAFKVFDQLLRDNCKPTVITYTI-----LIQATM-LEGQTD----KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~g~~~----~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 227 (534)
+ ++..|-.=+-.+++|...+-.. ++..|. +.++.+ ++..-++.- ++...+.+...... ..
T Consensus 433 ~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~-------~~~~~re~~~~~~~--~~ 502 (911)
T KOG2034|consen 433 R-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLE-------YDEVQREFSKFLVL--HK 502 (911)
T ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHH-------HHHHHHHHHHHHHh--hH
Confidence 4 3333322221223433332222 233332 222222 222222111 11111111111100 11
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (534)
+..........+...|+.+....+-..+.. |..++..+...+.+++|++++..-. ++..+....-
T Consensus 503 ~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap 567 (911)
T KOG2034|consen 503 DELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAP 567 (911)
T ss_pred HhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhh
Confidence 222233344445556777776655544432 4566777788888888888775531 2233322222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN---GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
.+. ...+......+....+. ........++..+... .....+..+++-....-...++...+.++..|....+
T Consensus 568 ~Li-~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 568 ELI-THSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHH-hcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 222 22333333333333222 1223333344444433 2334455555544433224566677777776665443
No 485
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=38.09 E-value=5.6e+02 Score=27.82 Aligned_cols=127 Identities=9% Similarity=0.038 Sum_probs=68.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIR-ALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNI 444 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (534)
.++...-...+.++...+..+. +...+..+.. .++...-...+.++...|....+...+..+.+ .++..+-..
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~ 826 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQG 826 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHH
Confidence 3455555556666665554332 3344444443 34555556666666666665544444444443 234444455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
.+.++...+. +++...+..+++ .|+..+-...+.++.+......+...+.++++
T Consensus 827 Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 827 AARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5666666654 345555555554 34666666667777665334455556655554
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.00 E-value=2.2e+02 Score=28.65 Aligned_cols=73 Identities=14% Similarity=0.173 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC---CChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCChhhHHHH
Q 047017 77 KLIKKFFQERKSNKAVRVMEILEKYGE---PDVFAYNALISGFCKANQIE------LANKVLDRLRSRGFSPDVVTYNIM 147 (534)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 147 (534)
.++.+|...|++..+.++++.+...++ .-...++..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 678888888888888888888877653 23456777778888888754 3444444443 23466677666
Q ss_pred HHHHH
Q 047017 148 IGSLC 152 (534)
Q Consensus 148 ~~~~~ 152 (534)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65443
No 487
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.92 E-value=3.5e+02 Score=25.50 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047017 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRG--LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (534)
..+..+...|...|+++.|++.|.+...-- .+-....+..++..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456778888999999999999998865431 1112334556666666778888777777766553
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.90 E-value=2.4e+02 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=13.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~ 293 (534)
++..|.+..+|.+..++++.+.+.
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666543
No 489
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=36.88 E-value=1.9e+02 Score=22.18 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=11.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC
Q 047017 115 GFCKANQIELANKVLDRLRSRG 136 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~ 136 (534)
-+.-.|+++.|+++.+.+++.|
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcC
Confidence 3445555555555555555554
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.52 E-value=1.2e+02 Score=19.74 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=31.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
.|+...++.++..+++..-.++++.++.++.+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666777777776677777777777777664 456666655555544
No 491
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.56 E-value=3.3e+02 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.648 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 047017 406 TYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A 423 (534)
+|.-|+.+++..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466667777777765543
No 492
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.27 E-value=1.3e+02 Score=22.18 Aligned_cols=46 Identities=4% Similarity=0.013 Sum_probs=28.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS 88 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (534)
++..+...+..-.|.++++.+.+.+...+..+....+..+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555556666777777776666555666666666666665543
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.14 E-value=1.7e+02 Score=21.01 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHcC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 047017 92 VRVMEILEKYG-EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTY 144 (534)
Q Consensus 92 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 144 (534)
.+.++++...+ +..+-....|.-.|.+.|+.+.|.+-|+.=+.. -|...+|
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhH
Confidence 34444444444 222333344445555666666666666554433 4444444
No 494
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.95 E-value=2.2e+02 Score=22.30 Aligned_cols=79 Identities=9% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 75 CTKLIKKFFQERKSNKAVRVMEILEKYG------EPDVFAYNALISGFCKANQ-IELANKVLDRLRSRGFSPDVVTYNIM 147 (534)
Q Consensus 75 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 147 (534)
.+.++......+++.-.+.+++.+.... ..+...|..++.+..+... --.+..+|.-+.+.+.+.+...|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555666666666666553222 2233445555555543333 22334445555544445555555555
Q ss_pred HHHHHc
Q 047017 148 IGSLCS 153 (534)
Q Consensus 148 ~~~~~~ 153 (534)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554433
No 495
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.00 E-value=83 Score=17.05 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHH
Q 047017 122 IELANKVLDRLRSRGFSPDVVTYN 145 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~~~ 145 (534)
++.|..+|++.... .|++.+|.
T Consensus 3 ~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHh--CCCchHHH
Confidence 34444555554443 34444443
No 496
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.91 E-value=3.6e+02 Score=24.37 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----------cCChHHH
Q 047017 389 LGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----------TRRINES 458 (534)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A 458 (534)
.++|+.+.+.++.|....+..+...+.+.=.+.+.+.+|+.+.. |..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46778888888899988888887777777788889999988875 33336666666653 4565555
Q ss_pred HHHHH
Q 047017 459 IEVLA 463 (534)
Q Consensus 459 ~~~~~ 463 (534)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55544
No 497
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=33.81 E-value=3.3e+02 Score=23.97 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKG-CKP-----NETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
.+..-|.+.|+.+.|..++--+...+ ... +...-..++......++|+-+.++.+=+...++..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 34445555666666655554443322 111 22333455666667788888887777766666543
No 498
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.99 E-value=3.7e+02 Score=24.25 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=14.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHH
Q 047017 369 VSSYNTMFSALWSSGDKIRAL 389 (534)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~ 389 (534)
...|..++.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345778888888888766543
No 499
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.86 E-value=3.6e+02 Score=24.11 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHhcHHHHHHHHHhcCCHHHH
Q 047017 262 PNVVTYSILISSLCRDGKTEDAVDVLRAAKEK-GLTPDAYSYDPLISAYCKDGRLDLA 318 (534)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 318 (534)
++..+...++..++..++|..-.+++...... +...|...|..++......|+..-.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 34444445555555555555555555444433 2333444555555555555554433
No 500
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=32.85 E-value=2.3e+02 Score=21.81 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 249 EKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
..+.+..++.|-.-....+..++-.+...|+++.|+.+.+.++++|.+.....-..+...+. ++..+......+.
T Consensus 33 ~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f~R~~~t~va-----eev~~~a~~~~~~ 107 (132)
T PF05944_consen 33 LPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRFKRTLPTFVA-----EEVADWALRAAKA 107 (132)
T ss_pred HHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccccccCcchHHHH-----HHHHHHHHHHHHc
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHH
Q 047017 329 GCLPDIVNYNTILAAFCKNGNADQA 353 (534)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~A 353 (534)
|.+.++..+......-....-++++
T Consensus 108 g~~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 108 GQSFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred CCCCChHHHHHHHHHHccCCCCCCC
Done!