Query 047017
Match_columns 534
No_of_seqs 709 out of 2922
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 11:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-42 2.8E-46 340.5 47.3 474 35-520 82-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9E-42 3.1E-46 340.2 38.4 473 47-533 63-575 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-30 8E-35 243.2 48.4 363 43-432 5-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3E-30 1E-34 242.4 48.2 382 79-522 6-387 (388)
5 2gw1_A Mitochondrial precursor 100.0 5.8E-28 2E-32 236.1 40.9 459 37-516 6-491 (514)
6 3fp2_A TPR repeat-containing p 100.0 4E-26 1.4E-30 224.3 42.4 443 37-512 25-500 (537)
7 2gw1_A Mitochondrial precursor 100.0 4.3E-27 1.5E-31 229.9 35.1 437 71-533 5-474 (514)
8 4g26_A Pentatricopeptide repea 100.0 6.1E-28 2.1E-32 229.7 25.1 210 250-485 11-221 (501)
9 4g26_A Pentatricopeptide repea 100.0 1.5E-27 5.1E-32 227.0 24.9 206 211-416 7-222 (501)
10 2y4t_A DNAJ homolog subfamily 100.0 1.1E-24 3.8E-29 209.0 41.4 316 69-432 23-357 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 6.7E-25 2.3E-29 210.5 39.5 315 35-376 24-370 (450)
12 3fp2_A TPR repeat-containing p 100.0 2E-25 6.7E-30 219.4 35.0 433 71-533 24-487 (537)
13 2xm6_A Protein corresponding t 99.9 2.5E-20 8.6E-25 180.1 52.8 364 56-469 26-433 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 8.8E-22 3E-26 182.7 40.0 325 175-524 2-356 (359)
15 2xm6_A Protein corresponding t 99.9 3.3E-20 1.1E-24 179.2 51.2 379 92-520 27-452 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 1.3E-21 4.5E-26 181.5 39.3 328 37-414 3-350 (359)
17 2ooe_A Cleavage stimulation fa 99.9 6.4E-20 2.2E-24 179.1 45.2 433 61-506 3-495 (530)
18 3hym_B Cell division cycle pro 99.9 1.5E-21 5.1E-26 178.9 31.7 293 226-524 19-321 (330)
19 2ooe_A Cleavage stimulation fa 99.9 7.8E-20 2.7E-24 178.5 43.7 415 95-532 2-487 (530)
20 3hym_B Cell division cycle pro 99.9 1.3E-20 4.4E-25 172.6 33.5 271 34-327 19-298 (330)
21 1fch_A Peroxisomal targeting s 99.9 7.4E-21 2.5E-25 177.1 25.6 291 239-534 35-356 (368)
22 1xi4_A Clathrin heavy chain; a 99.9 9.8E-18 3.3E-22 169.4 46.9 412 34-522 982-1415(1630)
23 4g1t_A Interferon-induced prot 99.9 1.4E-18 4.7E-23 167.6 36.9 376 105-515 50-471 (472)
24 4g1t_A Interferon-induced prot 99.9 8.3E-19 2.8E-23 169.1 34.5 367 140-533 50-455 (472)
25 1fch_A Peroxisomal targeting s 99.9 7.7E-20 2.6E-24 170.2 26.0 254 85-361 38-312 (368)
26 4eqf_A PEX5-related protein; a 99.9 5.3E-20 1.8E-24 171.0 24.6 264 266-534 67-353 (365)
27 1xi4_A Clathrin heavy chain; a 99.9 3.8E-17 1.3E-21 165.1 45.4 266 228-529 1104-1376(1630)
28 3cv0_A Peroxisome targeting si 99.8 4.5E-19 1.5E-23 162.1 26.5 262 231-533 23-311 (327)
29 4eqf_A PEX5-related protein; a 99.8 3.1E-19 1.1E-23 165.8 25.3 231 38-292 66-309 (365)
30 3mkr_A Coatomer subunit epsilo 99.8 1.4E-18 4.8E-23 154.6 27.6 276 237-530 7-287 (291)
31 3cv0_A Peroxisome targeting si 99.8 1.6E-18 5.5E-23 158.4 27.8 234 36-292 20-268 (327)
32 1b89_A Protein (clathrin heavy 99.8 2.8E-18 9.6E-23 155.4 26.8 380 49-498 15-412 (449)
33 1b89_A Protein (clathrin heavy 99.8 2.2E-18 7.6E-23 156.1 24.2 283 84-426 15-304 (449)
34 3mkr_A Coatomer subunit epsilo 99.8 4.2E-18 1.4E-22 151.5 22.0 247 271-532 6-259 (291)
35 3e4b_A ALGK; tetratricopeptide 99.8 2.5E-17 8.7E-22 156.4 27.0 348 41-434 7-388 (452)
36 2pl2_A Hypothetical conserved 99.8 1.7E-17 5.7E-22 141.2 21.8 198 331-533 2-210 (217)
37 3e4b_A ALGK; tetratricopeptide 99.8 8.6E-17 2.9E-21 152.7 28.6 384 76-503 7-421 (452)
38 4e6h_A MRNA 3'-END-processing 99.8 1.4E-14 4.9E-19 141.8 43.6 448 53-509 48-576 (679)
39 3uq3_A Heat shock protein STI1 99.8 1E-16 3.6E-21 140.8 25.6 240 265-518 6-257 (258)
40 3u4t_A TPR repeat-containing p 99.8 2.4E-16 8.3E-21 139.7 26.4 253 266-522 5-269 (272)
41 2pl2_A Hypothetical conserved 99.8 1.4E-16 5E-21 135.3 21.1 207 36-289 4-210 (217)
42 3uq3_A Heat shock protein STI1 99.7 2.3E-16 7.8E-21 138.6 21.2 221 299-533 5-232 (258)
43 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.6E-16 1.2E-20 138.9 22.3 247 276-531 17-269 (275)
44 3u4t_A TPR repeat-containing p 99.7 1.6E-15 5.6E-20 134.3 25.6 236 72-328 3-250 (272)
45 1ouv_A Conserved hypothetical 99.7 1.1E-14 3.9E-19 128.9 30.8 228 263-508 5-256 (273)
46 2h6f_A Protein farnesyltransfe 99.7 1.2E-15 4E-20 140.2 24.5 249 265-520 98-365 (382)
47 2q7f_A YRRB protein; TPR, prot 99.7 6.8E-16 2.3E-20 134.2 21.5 219 298-521 22-240 (243)
48 2ho1_A Type 4 fimbrial biogene 99.7 3.3E-15 1.1E-19 130.7 26.0 201 37-258 37-238 (252)
49 4e6h_A MRNA 3'-END-processing 99.7 2.9E-13 9.9E-18 132.7 41.4 427 35-470 64-572 (679)
50 2ho1_A Type 4 fimbrial biogene 99.7 7.2E-15 2.5E-19 128.5 26.9 211 300-514 38-249 (252)
51 2vq2_A PILW, putative fimbrial 99.7 1.2E-14 4E-19 124.7 27.0 214 298-514 7-222 (225)
52 2h6f_A Protein farnesyltransfe 99.7 3.6E-15 1.2E-19 137.0 24.9 253 37-309 97-363 (382)
53 2q7f_A YRRB protein; TPR, prot 99.7 1.3E-15 4.5E-20 132.4 20.2 203 34-258 20-222 (243)
54 2vq2_A PILW, putative fimbrial 99.7 2.2E-14 7.7E-19 122.9 26.8 202 37-258 8-211 (225)
55 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.6E-18 121.9 32.1 225 228-470 5-253 (273)
56 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6.1E-20 134.3 19.1 247 49-322 17-269 (275)
57 4abn_A Tetratricopeptide repea 99.7 8.4E-15 2.9E-19 140.0 22.4 214 315-533 84-317 (474)
58 3sf4_A G-protein-signaling mod 99.7 1.1E-15 3.7E-20 144.2 16.1 298 226-524 6-363 (406)
59 4a1s_A PINS, partner of inscut 99.7 3.9E-15 1.3E-19 140.6 18.7 277 37-327 48-371 (411)
60 3sf4_A G-protein-signaling mod 99.7 8.1E-15 2.8E-19 138.1 20.4 276 36-326 8-334 (406)
61 3spa_A Mtrpol, DNA-directed RN 99.6 6.1E-16 2.1E-20 151.7 10.2 114 335-448 128-245 (1134)
62 4a1s_A PINS, partner of inscut 99.6 3.6E-15 1.2E-19 140.8 15.3 280 229-509 48-378 (411)
63 3vtx_A MAMA; tetratricopeptide 99.6 8.8E-14 3E-18 115.0 21.6 164 36-202 4-167 (184)
64 3vtx_A MAMA; tetratricopeptide 99.6 9.1E-14 3.1E-18 114.9 21.6 172 333-508 4-175 (184)
65 2ond_A Cleavage stimulation fa 99.6 7.7E-13 2.6E-17 119.1 27.7 188 316-506 81-273 (308)
66 3ro2_A PINS homolog, G-protein 99.6 6E-14 2.1E-18 128.4 20.7 275 38-327 6-331 (338)
67 2ond_A Cleavage stimulation fa 99.6 9.7E-13 3.3E-17 118.4 28.0 217 54-293 33-270 (308)
68 3ro2_A PINS homolog, G-protein 99.6 9.1E-15 3.1E-19 133.9 14.1 277 229-506 5-335 (338)
69 4abn_A Tetratricopeptide repea 99.6 5.7E-14 2E-18 134.2 19.6 213 53-288 84-316 (474)
70 3ulq_A Response regulator aspa 99.6 2.3E-13 7.8E-18 126.9 22.8 234 147-396 109-366 (383)
71 3spa_A Mtrpol, DNA-directed RN 99.6 3.1E-15 1.1E-19 146.8 9.9 151 298-453 126-286 (1134)
72 3ulq_A Response regulator aspa 99.6 2.6E-13 8.8E-18 126.6 22.5 232 270-504 109-369 (383)
73 3nf1_A KLC 1, kinesin light ch 99.5 7.8E-14 2.7E-18 126.1 14.5 167 36-202 26-221 (311)
74 4i17_A Hypothetical protein; T 99.5 2.3E-12 7.9E-17 110.5 21.2 211 297-519 5-225 (228)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.3E-13 4.3E-18 124.7 13.0 248 229-505 27-309 (311)
76 4gyw_A UDP-N-acetylglucosamine 99.5 5.5E-13 1.9E-17 132.4 16.5 172 331-506 6-177 (723)
77 1hz4_A MALT regulatory protein 99.5 3.8E-11 1.3E-15 111.5 28.1 269 235-503 20-322 (373)
78 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 105.4 18.9 163 37-202 8-170 (186)
79 4gyw_A UDP-N-acetylglucosamine 99.5 2.1E-12 7.3E-17 128.2 20.1 164 36-202 8-171 (723)
80 3as5_A MAMA; tetratricopeptide 99.5 5E-12 1.7E-16 104.4 19.2 170 335-508 9-178 (186)
81 1hz4_A MALT regulatory protein 99.5 3.8E-11 1.3E-15 111.5 27.3 272 40-327 17-321 (373)
82 3q15_A PSP28, response regulat 99.5 5.1E-12 1.7E-16 117.5 21.2 158 309-467 111-289 (378)
83 3q15_A PSP28, response regulat 99.5 2.2E-11 7.5E-16 113.2 25.1 234 146-396 106-363 (378)
84 3qky_A Outer membrane assembly 99.5 9.7E-12 3.3E-16 109.1 21.2 213 298-531 14-255 (261)
85 4i17_A Hypothetical protein; T 99.5 6.3E-12 2.2E-16 107.7 19.3 191 332-533 5-205 (228)
86 1qqe_A Vesicular transport pro 99.4 2.4E-11 8.2E-16 108.3 20.1 211 308-518 46-284 (292)
87 3mv2_B Coatomer subunit epsilo 99.4 3.4E-10 1.1E-14 98.4 24.4 252 237-512 21-291 (310)
88 1qqe_A Vesicular transport pro 99.4 2.2E-11 7.4E-16 108.6 17.4 230 282-532 3-264 (292)
89 3edt_B KLC 2, kinesin light ch 99.4 1.5E-11 5.1E-16 109.3 15.2 155 48-202 12-195 (283)
90 2pzi_A Probable serine/threoni 99.3 3.2E-11 1.1E-15 120.6 17.1 171 345-520 402-580 (681)
91 3edt_B KLC 2, kinesin light ch 99.3 2.3E-11 8E-16 108.0 14.6 229 274-503 11-281 (283)
92 2uy1_A Cleavage stimulation fa 99.3 5.6E-09 1.9E-13 99.6 31.3 374 53-466 11-411 (493)
93 2uy1_A Cleavage stimulation fa 99.3 7.9E-09 2.7E-13 98.5 32.3 379 84-502 6-412 (493)
94 3urz_A Uncharacterized protein 99.3 1.3E-10 4.4E-15 97.7 17.6 161 38-202 5-183 (208)
95 3qky_A Outer membrane assembly 99.3 2.1E-10 7E-15 100.5 18.6 184 36-258 14-224 (261)
96 3urz_A Uncharacterized protein 99.3 1.7E-10 5.9E-15 96.9 17.4 171 71-265 3-191 (208)
97 4ga2_A E3 SUMO-protein ligase 99.3 1.7E-11 6E-16 96.8 10.0 146 43-191 3-149 (150)
98 3mv2_B Coatomer subunit epsilo 99.3 4.8E-10 1.6E-14 97.5 19.7 237 271-531 20-276 (310)
99 3dra_A Protein farnesyltransfe 99.3 8.1E-09 2.8E-13 90.9 26.9 231 40-292 35-286 (306)
100 2fo7_A Synthetic consensus TPR 99.3 4.7E-10 1.6E-14 86.9 17.2 130 39-170 3-132 (136)
101 3dra_A Protein farnesyltransfe 99.3 7.4E-09 2.5E-13 91.1 26.3 234 281-519 50-304 (306)
102 4ga2_A E3 SUMO-protein ligase 99.3 1E-11 3.6E-16 98.1 7.4 144 375-522 3-148 (150)
103 2pzi_A Probable serine/threoni 99.2 1.9E-10 6.5E-15 115.0 18.1 173 48-244 402-583 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 9.4E-10 3.2E-14 93.7 19.6 164 36-202 3-210 (225)
105 2fo7_A Synthetic consensus TPR 99.2 1E-09 3.5E-14 84.9 16.9 128 73-202 2-129 (136)
106 2r5s_A Uncharacterized protein 99.2 1.8E-10 6.1E-15 94.0 12.8 162 38-202 7-170 (176)
107 3rjv_A Putative SEL1 repeat pr 99.2 3E-09 1E-13 89.5 20.5 176 318-505 5-199 (212)
108 4gco_A Protein STI-1; structur 99.2 7.9E-10 2.7E-14 84.1 15.3 117 400-518 8-125 (126)
109 3rjv_A Putative SEL1 repeat pr 99.2 3.7E-09 1.3E-13 89.0 20.2 177 282-470 4-199 (212)
110 3qou_A Protein YBBN; thioredox 99.2 5E-10 1.7E-14 99.3 15.2 163 37-202 117-281 (287)
111 3qou_A Protein YBBN; thioredox 99.2 2.8E-10 9.5E-15 100.9 13.5 167 331-501 114-282 (287)
112 2r5s_A Uncharacterized protein 99.2 3.7E-10 1.3E-14 92.1 12.7 163 73-256 7-171 (176)
113 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.6E-09 1.9E-13 88.9 20.5 191 298-508 3-218 (225)
114 2vsy_A XCC0866; transferase, g 99.2 1.1E-09 3.9E-14 107.6 18.3 152 313-468 3-157 (568)
115 2vsy_A XCC0866; transferase, g 99.1 1.4E-09 4.9E-14 106.8 17.3 150 50-202 2-154 (568)
116 2ifu_A Gamma-SNAP; membrane fu 99.1 7.5E-10 2.6E-14 99.4 12.7 226 241-495 3-253 (307)
117 4gco_A Protein STI-1; structur 99.1 3.5E-09 1.2E-13 80.4 13.0 95 40-135 16-110 (126)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 8.3E-09 2.8E-13 92.5 17.5 224 206-460 3-253 (307)
119 2lni_A Stress-induced-phosphop 99.0 1.1E-08 3.6E-13 78.8 14.7 121 33-155 12-132 (133)
120 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.6E-08 1.2E-12 83.1 18.8 128 39-171 8-151 (213)
121 3q7a_A Farnesyltransferase alp 99.0 4.2E-07 1.4E-11 80.8 25.6 189 41-244 57-257 (349)
122 3gyz_A Chaperone protein IPGC; 99.0 6.8E-09 2.3E-13 81.3 12.4 126 37-171 9-134 (151)
123 2c2l_A CHIP, carboxy terminus 99.0 6.7E-09 2.3E-13 91.6 13.9 98 298-397 3-100 (281)
124 1a17_A Serine/threonine protei 99.0 2.2E-08 7.6E-13 80.5 15.8 95 372-468 16-110 (166)
125 2vgx_A Chaperone SYCD; alterna 99.0 3.9E-09 1.3E-13 82.9 10.5 122 391-516 9-131 (148)
126 1a17_A Serine/threonine protei 99.0 2.3E-08 7.7E-13 80.5 15.5 130 37-168 13-144 (166)
127 2lni_A Stress-induced-phosphop 99.0 1.3E-08 4.5E-13 78.3 13.5 119 402-522 14-132 (133)
128 1na0_A Designed protein CTPR3; 99.0 2.3E-08 7.9E-13 75.9 14.5 116 404-521 9-124 (125)
129 2vyi_A SGTA protein; chaperone 98.9 1.5E-08 5E-13 77.7 13.1 120 403-524 11-130 (131)
130 3u3w_A Transcriptional activat 98.9 2.3E-07 7.9E-12 82.5 22.5 163 340-503 81-266 (293)
131 4f3v_A ESX-1 secretion system 98.9 8.6E-09 2.9E-13 88.4 12.4 188 49-258 18-237 (282)
132 2vgx_A Chaperone SYCD; alterna 98.9 7.2E-09 2.5E-13 81.3 11.0 110 59-170 9-118 (148)
133 3gyz_A Chaperone protein IPGC; 98.9 1.2E-08 4E-13 80.0 12.1 98 37-135 36-133 (151)
134 1hh8_A P67PHOX, NCF-2, neutrop 98.9 8.2E-08 2.8E-12 80.9 18.0 128 336-469 8-151 (213)
135 1p5q_A FKBP52, FK506-binding p 98.9 2.9E-08 9.8E-13 90.0 15.8 87 440-527 197-283 (336)
136 4f3v_A ESX-1 secretion system 98.9 1.3E-08 4.3E-13 87.4 12.5 199 311-516 18-249 (282)
137 3upv_A Heat shock protein STI1 98.9 2.5E-08 8.5E-13 76.0 13.1 114 404-519 4-123 (126)
138 2e2e_A Formate-dependent nitri 98.9 2E-08 6.9E-13 81.8 13.1 123 47-171 20-145 (177)
139 2c2l_A CHIP, carboxy terminus 98.9 6.5E-09 2.2E-13 91.7 10.7 97 72-169 4-100 (281)
140 2xcb_A PCRH, regulatory protei 98.9 3.1E-08 1.1E-12 77.2 13.5 119 404-524 18-136 (142)
141 3u3w_A Transcriptional activat 98.9 4.8E-07 1.7E-11 80.4 23.0 167 77-257 80-265 (293)
142 3q7a_A Farnesyltransferase alp 98.9 1.6E-06 5.3E-11 77.2 25.5 180 86-279 68-257 (349)
143 2vyi_A SGTA protein; chaperone 98.9 3.5E-08 1.2E-12 75.6 13.4 115 74-190 14-128 (131)
144 1na0_A Designed protein CTPR3; 98.9 8.5E-08 2.9E-12 72.6 15.4 96 74-170 11-106 (125)
145 2fbn_A 70 kDa peptidylprolyl i 98.9 7E-09 2.4E-13 86.3 9.6 123 405-528 39-176 (198)
146 3dss_A Geranylgeranyl transfer 98.9 5.5E-06 1.9E-10 73.3 27.9 201 315-520 90-321 (331)
147 2qfc_A PLCR protein; TPR, HTH, 98.9 2.3E-07 7.7E-12 82.5 19.5 162 40-202 78-263 (293)
148 1elw_A TPR1-domain of HOP; HOP 98.9 1.1E-07 3.8E-12 71.1 14.7 114 403-518 3-116 (118)
149 2xcb_A PCRH, regulatory protei 98.8 1.5E-08 5.2E-13 79.0 9.9 96 73-169 19-114 (142)
150 3upv_A Heat shock protein STI1 98.8 8.2E-08 2.8E-12 73.0 13.7 97 38-135 5-101 (126)
151 2qfc_A PLCR protein; TPR, HTH, 98.8 4.6E-07 1.6E-11 80.5 20.6 167 336-503 77-266 (293)
152 3q49_B STIP1 homology and U bo 98.8 9.4E-08 3.2E-12 73.9 14.2 123 402-526 7-134 (137)
153 2e2e_A Formate-dependent nitri 98.8 5.2E-08 1.8E-12 79.3 13.2 129 380-511 21-152 (177)
154 3gw4_A Uncharacterized protein 98.8 4.8E-08 1.6E-12 81.6 13.1 155 47-202 2-173 (203)
155 3sz7_A HSC70 cochaperone (SGT) 98.8 8.7E-08 3E-12 76.8 14.0 110 403-514 10-119 (164)
156 1p5q_A FKBP52, FK506-binding p 98.8 9.9E-08 3.4E-12 86.5 15.5 123 71-195 146-283 (336)
157 1hxi_A PEX5, peroxisome target 98.8 4.5E-08 1.5E-12 73.7 10.7 97 38-135 18-114 (121)
158 3dss_A Geranylgeranyl transfer 98.8 7E-06 2.4E-10 72.7 26.1 212 39-258 28-267 (331)
159 1elw_A TPR1-domain of HOP; HOP 98.8 3.2E-07 1.1E-11 68.6 15.4 97 38-135 5-101 (118)
160 4gcn_A Protein STI-1; structur 98.8 9.1E-08 3.1E-12 72.7 12.0 105 74-180 10-120 (127)
161 3gw4_A Uncharacterized protein 98.8 6.8E-08 2.3E-12 80.6 12.5 157 346-503 4-176 (203)
162 1hxi_A PEX5, peroxisome target 98.8 6.8E-08 2.3E-12 72.7 11.1 96 409-506 22-117 (121)
163 4gcn_A Protein STI-1; structur 98.8 1.2E-07 4E-12 72.1 12.4 106 38-146 9-121 (127)
164 2dba_A Smooth muscle cell asso 98.8 2.6E-07 8.8E-12 72.5 14.9 115 402-519 26-144 (148)
165 2dba_A Smooth muscle cell asso 98.8 5.7E-07 2E-11 70.4 16.4 112 35-149 26-141 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.7 3.2E-07 1.1E-11 73.5 14.1 99 36-135 10-108 (164)
167 3rkv_A Putative peptidylprolyl 98.7 1.3E-07 4.6E-12 75.6 11.7 122 406-528 13-152 (162)
168 2fbn_A 70 kDa peptidylprolyl i 98.7 2.5E-07 8.5E-12 76.8 13.5 120 40-161 41-176 (198)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 2.2E-07 7.5E-12 88.1 14.5 123 406-529 270-406 (457)
170 1elr_A TPR2A-domain of HOP; HO 98.7 2.4E-07 8.1E-12 70.8 12.2 118 404-523 4-127 (131)
171 2kck_A TPR repeat; tetratricop 98.7 3.3E-07 1.1E-11 67.7 12.7 99 71-170 5-106 (112)
172 2kck_A TPR repeat; tetratricop 98.7 1.8E-07 6E-12 69.3 11.0 99 36-135 5-106 (112)
173 1elr_A TPR2A-domain of HOP; HO 98.7 1.4E-07 4.8E-12 72.1 10.5 96 39-135 6-108 (131)
174 3q49_B STIP1 homology and U bo 98.7 5E-07 1.7E-11 69.7 13.7 97 37-134 9-105 (137)
175 2xev_A YBGF; tetratricopeptide 98.7 6.4E-07 2.2E-11 68.3 13.6 95 40-135 5-105 (129)
176 2xev_A YBGF; tetratricopeptide 98.7 9.6E-07 3.3E-11 67.3 14.4 108 408-516 6-118 (129)
177 1ihg_A Cyclophilin 40; ppiase 98.6 3.8E-07 1.3E-11 83.6 13.9 93 438-531 272-364 (370)
178 1dce_A Protein (RAB geranylger 98.6 7E-07 2.4E-11 86.5 15.4 174 349-526 44-244 (567)
179 1wao_1 Serine/threonine protei 98.6 3E-07 1E-11 87.6 11.3 121 410-532 12-134 (477)
180 4b4t_Q 26S proteasome regulato 98.6 4.1E-06 1.4E-10 79.2 18.9 202 42-257 9-244 (434)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 8.4E-08 2.9E-12 91.0 7.1 149 51-202 248-412 (457)
182 2l6j_A TPR repeat-containing p 98.5 2.5E-07 8.6E-12 68.4 8.1 95 438-533 3-103 (111)
183 3rkv_A Putative peptidylprolyl 98.5 1E-06 3.5E-11 70.4 12.0 99 37-135 11-126 (162)
184 3k9i_A BH0479 protein; putativ 98.5 6.9E-08 2.3E-12 72.3 4.6 94 417-511 3-98 (117)
185 4b4t_Q 26S proteasome regulato 98.5 1.5E-05 5.2E-10 75.3 20.9 197 270-466 10-243 (434)
186 3k9i_A BH0479 protein; putativ 98.5 3.2E-07 1.1E-11 68.6 7.3 87 49-135 2-90 (117)
187 1wao_1 Serine/threonine protei 98.5 4.3E-07 1.5E-11 86.4 9.5 120 44-165 13-134 (477)
188 2hr2_A Hypothetical protein; a 98.5 7.1E-07 2.4E-11 68.9 8.7 91 443-533 15-127 (159)
189 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-06 5.9E-11 79.2 12.4 136 40-196 226-361 (370)
190 2hr2_A Hypothetical protein; a 98.4 2.9E-06 9.9E-11 65.5 11.6 98 38-135 12-131 (159)
191 2if4_A ATFKBP42; FKBP-like, al 98.4 7.7E-07 2.6E-11 80.6 9.1 130 369-518 179-308 (338)
192 3ro3_A PINS homolog, G-protein 98.4 7.6E-07 2.6E-11 70.9 8.0 136 370-505 10-160 (164)
193 3ro3_A PINS homolog, G-protein 98.4 1.6E-06 5.3E-11 69.1 9.4 131 38-168 10-156 (164)
194 2if4_A ATFKBP42; FKBP-like, al 98.3 1.9E-06 6.4E-11 78.1 9.3 130 38-170 180-328 (338)
195 1na3_A Designed protein CTPR2; 98.3 4.2E-06 1.5E-10 58.9 9.4 82 439-521 9-90 (91)
196 1zu2_A Mitochondrial import re 98.3 1.7E-06 5.9E-11 66.6 7.6 100 47-149 12-132 (158)
197 1dce_A Protein (RAB geranylger 98.2 0.00014 4.8E-09 70.5 20.5 193 46-246 37-243 (567)
198 1na3_A Designed protein CTPR2; 98.2 1.8E-05 6E-10 55.6 10.4 80 38-118 10-89 (91)
199 2l6j_A TPR repeat-containing p 98.2 1.3E-06 4.3E-11 64.5 4.0 87 38-125 5-97 (111)
200 2kat_A Uncharacterized protein 98.2 2E-05 6.8E-10 58.4 10.6 102 422-525 3-106 (115)
201 2kat_A Uncharacterized protein 98.2 1.8E-05 6.1E-10 58.6 10.2 80 55-135 3-82 (115)
202 1klx_A Cysteine rich protein B 98.1 0.00012 4.2E-09 56.1 14.6 111 384-505 10-128 (138)
203 1zu2_A Mitochondrial import re 98.1 1.7E-05 5.8E-10 61.1 8.9 98 417-516 15-133 (158)
204 3n71_A Histone lysine methyltr 98.1 1.5E-05 5E-10 75.4 10.3 132 150-292 318-463 (490)
205 3n71_A Histone lysine methyltr 98.1 1.4E-05 4.8E-10 75.5 10.1 134 114-258 317-464 (490)
206 1klx_A Cysteine rich protein B 98.0 0.00018 6.1E-09 55.1 14.2 12 349-360 76-87 (138)
207 3ma5_A Tetratricopeptide repea 97.9 6.1E-05 2.1E-09 54.0 8.5 63 71-133 6-68 (100)
208 2kc7_A BFR218_protein; tetratr 97.9 0.00012 4E-09 52.3 10.1 66 445-511 6-72 (99)
209 3ma5_A Tetratricopeptide repea 97.9 8.5E-05 2.9E-09 53.2 9.1 65 103-168 4-68 (100)
210 1pc2_A Mitochondria fission pr 97.7 0.00032 1.1E-08 53.3 10.3 94 420-515 14-112 (152)
211 2kc7_A BFR218_protein; tetratr 97.7 0.00012 4.2E-09 52.2 7.4 66 43-109 6-72 (99)
212 3lvg_A Clathrin heavy chain 1; 97.7 1.7E-06 6E-11 78.0 -3.2 217 70-312 52-276 (624)
213 3ly7_A Transcriptional activat 97.6 0.0016 5.5E-08 57.9 14.6 72 436-509 274-345 (372)
214 3bee_A Putative YFRE protein; 97.6 0.00075 2.6E-08 47.2 9.6 67 69-135 3-72 (93)
215 3ly7_A Transcriptional activat 97.5 0.0021 7.1E-08 57.2 13.9 132 69-202 191-336 (372)
216 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00099 3.4E-08 47.9 9.8 79 34-112 2-86 (104)
217 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0014 5E-08 47.0 10.4 78 438-515 4-87 (104)
218 3qwp_A SET and MYND domain-con 97.4 0.0013 4.5E-08 61.1 12.4 100 413-512 296-414 (429)
219 3bee_A Putative YFRE protein; 97.4 0.0017 5.8E-08 45.3 10.0 70 436-506 3-75 (93)
220 3qww_A SET and MYND domain-con 97.4 0.0016 5.4E-08 60.5 12.4 95 417-511 311-424 (433)
221 3u64_A Protein TP_0956; tetrat 97.3 0.0097 3.3E-07 50.7 15.2 85 420-506 179-272 (301)
222 3qww_A SET and MYND domain-con 97.3 0.00065 2.2E-08 63.1 8.6 94 153-257 310-410 (433)
223 3mkq_A Coatomer beta'-subunit; 97.2 0.016 5.5E-07 59.5 19.2 168 44-254 606-774 (814)
224 3lvg_A Clathrin heavy chain 1; 97.2 3.4E-05 1.2E-09 69.8 -0.7 233 36-284 53-324 (624)
225 1nzn_A CGI-135 protein, fissio 97.2 0.0036 1.2E-07 45.7 9.8 95 418-514 15-114 (126)
226 3qwp_A SET and MYND domain-con 97.2 0.0014 4.7E-08 61.0 9.4 99 148-257 294-399 (429)
227 3mkq_A Coatomer beta'-subunit; 97.1 0.12 4.1E-06 53.0 23.9 127 238-397 608-735 (814)
228 1pc2_A Mitochondria fission pr 97.1 0.0051 1.7E-07 46.8 9.8 81 54-135 15-100 (152)
229 4h7y_A Dual specificity protei 96.9 0.016 5.6E-07 43.3 11.1 62 452-514 73-134 (161)
230 3mkq_B Coatomer subunit alpha; 96.9 0.093 3.2E-06 41.0 15.5 99 83-201 16-114 (177)
231 3u64_A Protein TP_0956; tetrat 96.8 0.016 5.4E-07 49.4 11.8 84 54-137 180-271 (301)
232 4h7y_A Dual specificity protei 96.7 0.021 7.1E-07 42.8 10.2 101 35-136 11-124 (161)
233 3mkq_B Coatomer subunit alpha; 96.7 0.15 5.1E-06 39.9 16.6 130 44-202 12-141 (177)
234 3o48_A Mitochondria fission 1 96.3 0.095 3.3E-06 38.4 11.4 81 434-514 35-118 (134)
235 1y8m_A FIS1; mitochondria, unk 96.3 0.21 7.2E-06 37.2 13.9 79 436-514 36-117 (144)
236 3ffl_A Anaphase-promoting comp 96.3 0.026 8.9E-07 43.3 8.6 119 37-168 20-149 (167)
237 1nzn_A CGI-135 protein, fissio 96.2 0.031 1.1E-06 40.8 8.5 82 88-170 17-103 (126)
238 1wy6_A Hypothetical protein ST 96.2 0.22 7.6E-06 36.5 14.4 67 228-295 90-156 (172)
239 4ady_A RPN2, 26S proteasome re 95.6 2.3 8E-05 43.2 31.5 158 269-432 495-657 (963)
240 4ady_A RPN2, 26S proteasome re 95.2 3.2 0.00011 42.2 37.0 94 39-134 147-258 (963)
241 1wy6_A Hypothetical protein ST 95.1 0.67 2.3E-05 34.0 16.1 64 441-505 93-156 (172)
242 1qsa_A Protein (soluble lytic 95.1 2.8 9.4E-05 40.8 35.2 325 45-397 14-347 (618)
243 3ffl_A Anaphase-promoting comp 94.7 0.29 9.8E-06 37.6 9.3 118 72-202 20-148 (167)
244 4b4t_P 26S proteasome regulato 94.7 2.8 9.5E-05 39.1 18.4 168 337-504 140-325 (445)
245 4gns_B Protein CSD3, chitin bi 94.3 0.12 4E-06 51.3 8.1 52 448-500 346-397 (754)
246 2ff4_A Probable regulatory pro 94.1 0.37 1.3E-05 44.0 10.8 130 34-180 109-249 (388)
247 4fhn_B Nucleoporin NUP120; pro 94.0 2.3 7.9E-05 45.2 18.0 59 144-202 902-964 (1139)
248 4fhn_B Nucleoporin NUP120; pro 93.5 3 0.0001 44.3 17.7 164 147-317 818-989 (1139)
249 4gns_B Protein CSD3, chitin bi 93.4 0.48 1.6E-05 47.0 10.6 47 405-453 614-660 (754)
250 1qsa_A Protein (soluble lytic 93.1 7 0.00024 38.1 35.4 258 74-362 74-347 (618)
251 1v54_E Cytochrome C oxidase po 92.1 2 6.7E-05 29.6 8.9 48 457-504 28-75 (109)
252 3txn_A 26S proteasome regulato 92.1 6.7 0.00023 35.6 20.0 167 35-201 17-206 (394)
253 3lpz_A GET4 (YOR164C homolog); 91.8 6.3 0.00022 34.6 21.8 127 44-199 19-159 (336)
254 4b4t_P 26S proteasome regulato 91.8 8.2 0.00028 35.9 20.0 194 50-257 29-246 (445)
255 1y8m_A FIS1; mitochondria, unk 91.7 2.3 7.9E-05 31.7 9.8 71 69-141 36-110 (144)
256 2wpv_A GET4, UPF0363 protein Y 90.5 8.2 0.00028 33.6 21.7 131 41-200 17-158 (312)
257 3o48_A Mitochondria fission 1 90.5 2.2 7.6E-05 31.3 8.6 72 68-141 36-111 (134)
258 2ff4_A Probable regulatory pro 90.4 2.4 8.2E-05 38.7 11.1 56 340-396 177-232 (388)
259 2p58_C Putative type III secre 89.9 3.4 0.00012 28.3 8.7 87 85-179 20-106 (116)
260 2uwj_G Type III export protein 89.4 3.3 0.00011 28.4 7.9 87 85-179 19-105 (115)
261 2y69_E Cytochrome C oxidase su 89.0 4.5 0.00015 29.6 8.9 55 458-512 72-126 (152)
262 1zbp_A Hypothetical protein VP 87.9 4 0.00014 34.4 9.5 55 413-468 6-60 (273)
263 3lpz_A GET4 (YOR164C homolog); 87.8 14 0.00046 32.5 27.8 111 232-357 38-159 (336)
264 1v54_E Cytochrome C oxidase po 87.6 5.3 0.00018 27.6 8.9 41 355-395 31-71 (109)
265 1zbp_A Hypothetical protein VP 87.0 2.5 8.7E-05 35.5 7.8 54 82-135 7-60 (273)
266 2p58_C Putative type III secre 85.7 3.5 0.00012 28.2 6.4 32 226-259 68-99 (116)
267 4b4t_R RPN7, 26S proteasome re 85.2 15 0.00052 33.9 13.2 99 72-170 131-237 (429)
268 2y69_E Cytochrome C oxidase su 84.3 10 0.00035 27.8 9.8 58 55-112 71-128 (152)
269 2uwj_G Type III export protein 84.0 3.4 0.00012 28.3 5.8 32 226-259 67-98 (115)
270 4b4t_R RPN7, 26S proteasome re 83.6 9.2 0.00031 35.4 10.9 116 87-202 109-234 (429)
271 3esl_A Checkpoint serine/threo 83.3 16 0.00054 29.2 10.9 55 418-472 93-148 (202)
272 3esl_A Checkpoint serine/threo 81.2 15 0.00051 29.3 9.5 56 382-437 92-148 (202)
273 2wpv_A GET4, UPF0363 protein Y 77.5 35 0.0012 29.7 25.7 112 232-358 36-158 (312)
274 4a1g_A Mitotic checkpoint seri 72.5 29 0.00099 26.3 10.0 53 458-510 84-137 (152)
275 4a1g_A Mitotic checkpoint seri 71.3 31 0.0011 26.1 9.2 55 421-475 82-137 (152)
276 2wvi_A Mitotic checkpoint seri 66.8 41 0.0014 25.8 9.2 51 423-473 79-130 (164)
277 3bu8_A Telomeric repeat-bindin 63.7 14 0.00047 29.6 5.4 20 448-467 123-142 (235)
278 3txn_A 26S proteasome regulato 61.5 94 0.0032 28.1 27.9 58 234-291 104-166 (394)
279 2d2s_A Exocyst complex compone 60.9 63 0.0022 26.7 9.3 25 41-65 22-46 (235)
280 2wvi_A Mitotic checkpoint seri 60.0 56 0.0019 25.1 10.6 58 456-513 77-135 (164)
281 4b4t_S RPN3, 26S proteasome re 59.2 67 0.0023 30.2 10.0 64 72-135 231-299 (523)
282 4aez_C MAD3, mitotic spindle c 58.3 58 0.002 26.5 8.3 51 422-472 132-183 (223)
283 2d2s_A Exocyst complex compone 57.0 60 0.002 26.8 8.5 90 375-467 24-119 (235)
284 1bpo_A Protein (clathrin); cla 53.2 1.2E+02 0.0043 27.9 10.3 110 50-163 342-451 (494)
285 4gq2_M Nucleoporin NUP120; bet 51.0 1.4E+02 0.005 30.9 12.1 51 147-202 816-866 (950)
286 2ijq_A Hypothetical protein; s 49.2 84 0.0029 24.0 7.5 54 47-100 42-103 (161)
287 1bpo_A Protein (clathrin); cla 49.0 62 0.0021 29.8 7.8 122 37-167 361-482 (494)
288 4aez_C MAD3, mitotic spindle c 49.0 37 0.0013 27.6 5.8 52 457-508 132-184 (223)
289 3ph0_C ASCG; type III secretio 48.5 16 0.00053 21.8 2.6 11 158-168 23-33 (61)
290 1wdy_A 2-5A-dependent ribonucl 45.9 1.1E+02 0.0039 25.4 9.3 50 43-96 8-60 (285)
291 3eiq_C Programmed cell death p 45.6 1.4E+02 0.0046 26.6 9.4 231 233-484 58-298 (358)
292 3mv2_A Coatomer subunit alpha; 41.9 1.7E+02 0.006 25.4 10.0 49 123-171 187-237 (325)
293 4gq2_M Nucleoporin NUP120; bet 41.6 2.1E+02 0.0071 29.8 11.6 108 78-190 816-950 (950)
294 2ijq_A Hypothetical protein; s 40.5 1.2E+02 0.0042 23.2 7.7 53 450-502 43-103 (161)
295 3bu8_A Telomeric repeat-bindin 39.7 90 0.0031 25.1 6.4 25 111-135 119-143 (235)
296 3iqu_A 14-3-3 protein sigma; s 39.4 1.2E+02 0.004 25.1 7.4 66 36-101 7-73 (236)
297 1o9d_A 14-3-3-like protein C; 37.8 1.8E+02 0.0062 24.4 12.6 178 37-222 8-217 (260)
298 4b4t_S RPN3, 26S proteasome re 34.0 1E+02 0.0035 29.0 7.0 65 404-468 231-299 (523)
299 1oai_A Nuclear RNA export fact 33.9 57 0.002 19.8 3.7 23 489-511 35-57 (59)
300 3bqo_A Telomeric repeat-bindin 33.7 21 0.00071 28.2 2.0 25 444-468 122-146 (211)
301 3ctd_A Putative ATPase, AAA fa 32.6 1.9E+02 0.0066 23.2 9.2 67 106-172 32-106 (213)
302 3mv2_A Coatomer subunit alpha; 32.5 2.5E+02 0.0086 24.4 10.2 53 456-508 187-241 (325)
303 2ion_A PDCD4, programmed cell 30.9 1.7E+02 0.0059 22.0 7.2 62 406-471 11-77 (152)
304 2fe3_A Peroxide operon regulat 30.8 1.6E+02 0.0056 21.8 7.0 38 451-488 33-70 (145)
305 3ax2_A Mitochondrial import re 30.5 1.1E+02 0.0037 19.6 5.7 38 480-517 23-60 (73)
306 3lxu_X Tripeptidyl-peptidase 2 30.3 2.5E+02 0.0086 30.2 9.8 211 72-302 1107-1354(1354)
307 2o03_A Probable zinc uptake re 30.3 1.1E+02 0.0037 22.3 5.5 45 43-87 16-60 (131)
308 2xig_A Ferric uptake regulatio 29.4 1.8E+02 0.0061 21.8 7.5 41 448-488 35-75 (150)
309 2ion_A PDCD4, programmed cell 29.3 1.8E+02 0.0063 21.9 7.5 64 232-296 12-77 (152)
310 2w57_A Ferric uptake regulatio 28.4 1.5E+02 0.0053 22.1 6.2 34 420-453 33-66 (150)
311 3bge_A Predicted ATPase; struc 28.4 2.2E+02 0.0077 22.6 8.4 21 417-437 20-40 (201)
312 3eyy_A Putative iron uptake re 28.3 1.3E+02 0.0045 22.4 5.8 13 421-433 34-46 (145)
313 2nsz_A Programmed cell death p 28.3 1.7E+02 0.0059 21.2 8.6 65 406-471 9-75 (129)
314 3mwm_A ZUR, putative metal upt 27.3 1E+02 0.0035 22.8 4.9 45 43-87 19-63 (139)
315 1zl8_A LIN-7; heterodimer, alp 26.3 71 0.0024 18.5 2.8 31 489-519 8-38 (53)
316 2xig_A Ferric uptake regulatio 26.2 2.1E+02 0.007 21.4 7.5 15 279-293 41-55 (150)
317 2qx5_A Nucleoporin NIC96; mRNA 26.2 4.8E+02 0.016 25.6 21.0 21 235-255 300-320 (661)
318 4ets_A Ferric uptake regulatio 26.0 1.7E+02 0.0057 22.3 6.1 44 270-313 38-83 (162)
319 1ug3_A EIF4GI, eukaryotic prot 25.5 2.8E+02 0.0095 24.4 8.3 22 234-255 16-37 (339)
320 2fu4_A Ferric uptake regulatio 25.5 1.4E+02 0.0048 19.2 6.0 33 456-488 34-66 (83)
321 4ets_A Ferric uptake regulatio 25.1 1.6E+02 0.0054 22.5 5.8 69 123-192 14-85 (162)
322 2nsz_A Programmed cell death p 24.5 2E+02 0.007 20.8 8.8 64 232-296 10-75 (129)
323 3hra_A Ankyrin repeat family p 24.3 2.5E+02 0.0084 21.7 8.6 12 84-95 14-25 (201)
324 1wdy_A 2-5A-dependent ribonucl 24.3 3E+02 0.01 22.7 9.8 112 78-200 8-126 (285)
325 1bd8_A P19INK4D CDK4/6 inhibit 24.2 1.3E+02 0.0046 22.1 5.4 115 43-166 5-123 (156)
326 2rpa_A Katanin P60 ATPase-cont 24.0 85 0.0029 20.5 3.3 27 39-65 14-40 (78)
327 1g1e_B SIN3A; four-helix bundl 23.9 1.7E+02 0.0058 19.6 6.8 30 455-485 10-39 (89)
328 1mzb_A Ferric uptake regulatio 23.8 2.1E+02 0.0073 20.8 6.6 12 282-293 36-47 (136)
329 1mzb_A Ferric uptake regulatio 23.8 1.4E+02 0.0049 21.8 5.2 45 77-121 22-68 (136)
330 2w57_A Ferric uptake regulatio 23.6 2.2E+02 0.0076 21.2 6.3 33 316-348 34-66 (150)
331 2o03_A Probable zinc uptake re 23.5 1.3E+02 0.0046 21.8 5.0 34 454-487 25-58 (131)
332 3ubw_A 14-3-3E, 14-3-3 protein 23.3 3.3E+02 0.011 22.8 11.7 47 456-502 173-227 (261)
333 2qfz_A TBC1 domain family memb 23.3 1.3E+02 0.0044 26.6 5.7 44 391-434 231-274 (345)
334 2crb_A Nuclear receptor bindin 23.2 1.6E+02 0.0054 19.9 4.5 17 480-496 21-37 (97)
335 3jxi_A Vanilloid receptor-rela 22.7 1.7E+02 0.0058 24.0 6.3 57 43-99 8-73 (260)
336 3eyy_A Putative iron uptake re 22.5 1.9E+02 0.0066 21.4 5.7 33 316-348 34-66 (145)
337 2fe3_A Peroxide operon regulat 22.4 2.4E+02 0.0082 20.9 7.5 11 317-327 39-49 (145)
338 1ya0_A SMG-7 transcript varian 22.3 4.9E+02 0.017 24.4 10.0 80 38-118 153-232 (497)
339 2b7e_A PRE-mRNA processing pro 22.1 78 0.0027 19.3 2.7 29 158-186 3-31 (59)
340 2f6m_A Suppressor protein STP2 21.5 1.5E+02 0.0053 18.4 3.9 15 52-66 17-31 (65)
341 3bqo_A Telomeric repeat-bindin 21.1 1.5E+02 0.0052 23.5 4.8 26 110-135 121-146 (211)
342 4b4t_O 26S proteasome regulato 21.1 4.6E+02 0.016 23.6 8.9 55 148-202 83-153 (393)
343 2r9g_A AAA ATPase, central reg 21.1 3.2E+02 0.011 21.8 11.3 88 416-504 26-121 (204)
344 3ltm_A Alpha-REP4; protein eng 20.6 3.1E+02 0.011 21.5 19.0 198 77-314 6-203 (211)
345 2cwy_A Hypothetical protein TT 20.6 2E+02 0.0068 19.5 4.9 51 47-99 11-66 (94)
346 2keb_A DNA polymerase subunit 20.2 2.2E+02 0.0074 19.5 6.0 26 390-415 30-55 (101)
347 3kae_A CDC27, possible protein 20.0 3.1E+02 0.011 21.3 13.3 114 44-166 9-139 (242)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-42 Score=340.52 Aligned_cols=474 Identities=9% Similarity=0.039 Sum_probs=409.0
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
++...|..++..+.+.|++++|+.+|+++... .|+..++..++.++...|++++|..+|+.+... +++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHH
Confidence 35567899999999999999999999999864 567788999999999999999999999988654 778999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhH
Q 047017 115 GFCKANQIELANKVLDRLRSR---------------GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITY 179 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 179 (534)
+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence 999999999999999953322 223357899999999999999999999999999875 5566666
Q ss_pred HHHHHHHHhcCCHhHHH------------------HHHHHh--cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 180 TILIQATMLEGQTDKAM------------------KLLDEM--GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~------------------~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
..++..+...+..+.+. .++..+ .+...|++++|..+|+.+... +++..+++.++..+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 66655443322221111 111111 456778888899988887665 57899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
.+.|++++|..+|+++.+.+. .+..++..++.++...|++++|..+++.+.+.. +.+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999998753 378899999999999999999999999998764 457889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 320 EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKG 399 (534)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 399 (534)
.+|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998864 5578899999999999999999999999999875 7788999999999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 400 IEPDEITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT--VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 400 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|...|++++|.++++++++.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 457889999999999999999999999999765 55777 6799999999999999999999999999976 348
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 474 ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
..+|..++.+|...|++++|.++++++++.+|.++.++..++++|..
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-42 Score=340.23 Aligned_cols=473 Identities=10% Similarity=-0.021 Sum_probs=392.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
....|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+.+....| +..++..++.+|.+.|++++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC-CchHHHHHHHHHHHcCcHHHHH
Confidence 344556666666654432 35788899999999999999999999999986644 6688899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCC
Q 047017 127 KVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD---------------NCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~ 191 (534)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999998654 678999999999999999999999999953321 223457899999999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHH-------------------HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQF-------------------VRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLM 252 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (534)
+++|.+.|+++.............+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999833222222111111 222222222233344566677788899999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047017 253 TEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP 332 (534)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (534)
+++.+. +++..++..++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 999876 5789999999999999999999999999999875 3477889999999999999999999999998764 56
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..++..++.+|.+.|++++|.++|+++.+.. |.+..+|..++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 78899999999999999999999999998864 6778899999999999999999999999999863 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK----GCKPN--ETTYVLLIEGIGY 486 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 486 (534)
+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999998763 347889999999999999999999999999886 66777 7899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 487 GGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 487 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.|++++|.++++++++.+|.++.++..++.+|...|+|++|.+.+.+
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-30 Score=243.18 Aligned_cols=363 Identities=16% Similarity=0.111 Sum_probs=210.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++.+.+..|.+..+|..++.++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455667777777777777776654 455666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
++|.+.|+++.+.. +.+...|..++.++...|++++|.+.|+++.+.+ |.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777776652 2234566777777777777777777777776654 444555666666666666666666666554
Q ss_pred cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhH
Q 047017 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (534)
.... +.+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++
T Consensus 162 ------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 162 ------------------IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp ------------------HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTH
T ss_pred ------------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHH
Confidence 2221 22445566666666666666666666666665432 234455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 283 AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
|...++++.+.. +.+..++..++.++...|++++|...++++.+.+ +.+..++..++..+.+.|++++|+..|+++.+
T Consensus 222 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555442 1234445555555555555555555555555442 22344455555555555555555555555544
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
.. |.+..++..++..+...|++++|...++++.+. .+.+..++..++.++.+.|++++|...++++.+
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 42 444444444555555555555555555444443 122334444444444444444444444444443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3e-30 Score=242.42 Aligned_cols=382 Identities=14% Similarity=0.081 Sum_probs=242.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH
Q 047017 79 IKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE 158 (534)
Q Consensus 79 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 158 (534)
+..+.+.|++++|...++.+.+..|.+..++..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 4455566667777766666666666666666666666666666666666666665542 334556666666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047017 159 SAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRT 238 (534)
Q Consensus 159 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (534)
+|...|+++.+.. |.+..++..++.++...|++++|.+.|+++ .... +.+...+..+...
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------l~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA------------------LQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH------------------HHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhC-CCcHHHHHHHHHH
Confidence 6666666666543 334445555555555555555555555543 2211 1123334444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHH
Q 047017 239 LLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLA 318 (534)
Q Consensus 239 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 318 (534)
+...|++++|...|+++. +.. +.+..++..++..+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAI-----------------------------------ETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHTTSCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHH-----------------------------------HhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 444455555555554444 432 12334455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 319 IEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK 398 (534)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 398 (534)
...|+++.+.+ +.+...+..+...+...|++++|+..++++.... |.+..++..++.++...|++++|...++++.+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555542 3344556666666666666666666666666553 445666666777777777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 399 GIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 399 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
+ +.+..++..++.++.+.|++++|...++++.+.. +.+..++..++..+...|++++|...++++++.. +.+..++.
T Consensus 267 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 343 (388)
T 1w3b_A 267 Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343 (388)
T ss_dssp C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 2 2345667777777777788888888877777652 4466777788888888888888888888887753 33577788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++.++.+.|++++|...++++++..|..+.++..++.++...|
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888888888888888888888888776543
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.8e-28 Score=236.06 Aligned_cols=459 Identities=11% Similarity=-0.002 Sum_probs=340.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+......+.+.|++++|+..|+++++.+ |+..++..++.++...|++++|...++.+.+.+|.+..++..++.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3467788889999999999999999999875 58999999999999999999999999999999899999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHh
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE---GQTD 193 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~ 193 (534)
...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-....... ....
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999998875 3344444445444444333333333332222221111111111000000000 1111
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-----
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN---MGKWEEGEKLMTEMIS-----RGL----- 260 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~----- 260 (534)
.....+.... ..... .....+.+...+......+.. .|++++|...++++.. ...
T Consensus 163 ~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 163 SMASFFGIFK--PELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp HHHHHHTTSC--CCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHHHHHhhcC--HHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 1111111000 00000 000002234455555555554 8999999999999987 311
Q ss_pred ---CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047017 261 ---EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNY 337 (534)
Q Consensus 261 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (534)
+.+..++..++..+...|++++|...++.+.+.... ...+..++.++...|++++|...++.+.... +.+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 123557788889999999999999999999987533 7788889999999999999999999998874 5567889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047017 338 NTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD 417 (534)
Q Consensus 338 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 417 (534)
..++..+...|++++|+..++++.+.. |.+...+..++..+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHC
Confidence 999999999999999999999998875 6678889999999999999999999999998753 34567888999999999
Q ss_pred CCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047017 418 GMVDEAVGLLVDMESTRFR-PT----VISYNIIILGFCK---TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGW 489 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 489 (534)
|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++++..+ .+..++..++.++...|+
T Consensus 386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcC
Confidence 9999999999998764211 11 3388899999999 9999999999999998753 367888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 490 RAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+++|...++++++..|.++..+..+..
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999988776643
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4e-26 Score=224.29 Aligned_cols=443 Identities=13% Similarity=0.059 Sum_probs=325.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+.+...+|.+..++..++.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567888999999999999999999999876 678899999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHhH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNC--KPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
...|++++|.+.|+.+ .. .|+. ....+..+...+....|...++.+..... .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 9999999999999743 33 2222 22223445555666889999998875420 0011111233344555666665
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHH--------HhcCCHHHHHHHHHHHHHCCCCCC--
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI-SYNMLLRTL--------LNMGKWEEGEKLMTEMISRGLEPN-- 263 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~-- 263 (534)
+...+... ....+... ....+...+ ...|++++|..+++.+.+.... +
T Consensus 179 ~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~ 237 (537)
T 3fp2_A 179 EVSSVNTS--------------------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237 (537)
T ss_dssp HHHTSCCC--------------------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHH
T ss_pred HHHHHhhc--------------------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cch
Confidence 55444332 01111111 112222221 1235788888899888876322 2
Q ss_pred -----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 264 -----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 264 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++.+.. +.+..++.
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 314 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYY 314 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHH
Confidence 2246667778888899999999999988863 457778888888889999999999999988864 45678888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
.++..+...|++++|+..++++.+.. |.+...+..++.++...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 89999999999999999999998875 6677888889999999999999999999988763 445678888889999999
Q ss_pred CHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRF-----RPTVISYNIIILGFCKT----------RRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
++++|...++++.+... ......+.....++... |++++|...++++++..+ .+..++..++.+
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 471 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQL 471 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 99999999988865421 11122244555677777 999999999999988753 367888899999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+...|++++|.+.|+++++..|..++...
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999988876654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.3e-27 Score=229.92 Aligned_cols=437 Identities=11% Similarity=0.002 Sum_probs=328.5
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
....+...+..+...|++++|+..|+.+...+| +..++..++.++.+.|++++|.+.++++.+.+ +.+..++..++.+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 356678888999999999999999999999875 89999999999999999999999999998874 3467889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh
Q 047017 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI 230 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (534)
+...|++++|...|+++...+ +++......++..+........+.+.+..+ ...+..|+..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~ 143 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDI------------------DTATATPTEL 143 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhhhc
Confidence 999999999999999999886 455555555554444333222222222111 0000000000
Q ss_pred hHHHHH---HHHHhcCCHHHHHHHHHHHHHC------CCCCChhhHHHHHHHHHh---CCChhHHHHHHHHHHH-----C
Q 047017 231 SYNMLL---RTLLNMGKWEEGEKLMTEMISR------GLEPNVVTYSILISSLCR---DGKTEDAVDVLRAAKE-----K 293 (534)
Q Consensus 231 ~~~~l~---~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~ 293 (534)
.+.... ...........+...+...... ..+.+...+......+.. .|++++|...++++.+ .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 000000 0000011111111111110000 001124445555555554 8999999999999988 3
Q ss_pred CC--------CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC
Q 047017 294 GL--------TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC 365 (534)
Q Consensus 294 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 365 (534)
.. +.+...+..++..+...|++++|...++++.+.. |+...+..++.++...|++++|...++++....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 300 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD- 300 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-
Confidence 11 1234567788899999999999999999999875 338888999999999999999999999999875
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047017 366 PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNII 445 (534)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (534)
|.+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 6788899999999999999999999999999863 3356788889999999999999999999998763 3367788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKP-N----ETTYVLLIEGIGY---GGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
+..+...|++++|...++++++..... + ...+..++.++.. .|++++|...++++++..|..+.++..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 999999999999999999998753221 1 3488899999999 9999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhhcc
Q 047017 518 FPLLDVYKEISHLATK 533 (534)
Q Consensus 518 ~~~~~~~~~~~~~~~k 533 (534)
|...|++++|...+.+
T Consensus 459 ~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 9999999999988753
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6.1e-28 Score=229.65 Aligned_cols=210 Identities=15% Similarity=0.233 Sum_probs=101.7
Q ss_pred HHHHHHHHCCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 250 KLMTEMISRGLEPNVV-TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 250 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
.+.+.+.+.+..+.+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+....+
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~---------- 80 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES---------- 80 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------
Confidence 3344444444333322 34555556666666666666666666656666666666666555544331000
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 329 GCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYN 408 (534)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 408 (534)
...+..+.|.++|++|...|+.||..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011134455555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.|..|+..||..++..+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555544443
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-27 Score=226.97 Aligned_cols=206 Identities=13% Similarity=0.214 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC---------h
Q 047017 211 GQAFQFVRSLESRGCQPDV-ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK---------T 280 (534)
Q Consensus 211 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 280 (534)
..+..+.+.+.+.+..+.+ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445556666666665554 45888999999999999999999999999999999999999999987765 4
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKL 360 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 360 (534)
+.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 361 SDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777776777777777766666654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.1e-24 Score=208.99 Aligned_cols=316 Identities=13% Similarity=0.132 Sum_probs=162.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047017 69 KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMI 148 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 148 (534)
+.+...+..++..+...|++++|+.+|+.+....|.+..++..++.++...|++++|...|+++.+.+ +.+...+..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44566666667777777777777777777766666667777777777777777777777777766653 23456666677
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC
Q 047017 149 GSLCSRGMIESAFKVFDQLLRDNCKPTV---ITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 149 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
.+|...|++++|...|+++.+.. +.+. ..+..++..+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------------------------------- 145 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQR----------------------------------- 145 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHH-----------------------------------
Confidence 77777777777777777776653 3333 44444443321111
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+..+...+...|++++|+..|+.+.... +.+...+..++.+|...|++++|...++++.+.. +.+...+..+
T Consensus 146 ------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 217 (450)
T 2y4t_A 146 ------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKI 217 (450)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 1122223334444444444444444332 1233444444444444444444444444444331 1233444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH------------HHHHHHhCCCHHHHHHHHHHHhhCCCCCC----H
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNT------------ILAAFCKNGNADQALEIFEKLSDVGCPPN----V 369 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~ 369 (534)
+.+|...|++++|...++++.... +.+...+.. ++..+...|++++|+..|+++.+.. |.+ .
T Consensus 218 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 295 (450)
T 2y4t_A 218 STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTV 295 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHH
Confidence 444444444444444444444331 112222222 2445555555555555555555432 222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
..+..++.++.+.|++++|+..++++.+.. +.+...+..++.+|...|++++|...++++.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 244445555555555555555555554431 22345555555555555555555555555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=6.7e-25 Score=210.48 Aligned_cols=315 Identities=13% Similarity=0.113 Sum_probs=238.6
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
.+...+..+...+.+.|++++|+.+|+++++.. +.+..++..++.++...|++++|...|+.+.+.+|.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356778899999999999999999999999865 6689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-h---hhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhh
Q 047017 115 GFCKANQIELANKVLDRLRSRGFSPD-V---VTYNIM------------IGSLCSRGMIESAFKVFDQLLRDNCKPTVIT 178 (534)
Q Consensus 115 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 178 (534)
++.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999987 444 3 555555 444888899999999999988775 667888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+..++.+|...|++++|...|+++ ... .+.+..++..++.++...|++++|+..|+++...
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAA------------------SKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHH------------------HHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888888876 222 1346778888888999999999999999988876
Q ss_pred CCCCChhhHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCC----HhcHHHHHHHHHhcCCHHHHHHHH
Q 047017 259 GLEPNVVTYSIL------------ISSLCRDGKTEDAVDVLRAAKEKGLTPD----AYSYDPLISAYCKDGRLDLAIEFL 322 (534)
Q Consensus 259 ~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 322 (534)
.. .+...+..+ +..+...|++++|...|+.+.+.... + ...+..++.++.+.|++++|...+
T Consensus 241 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 32 233334333 56666667777777777776664211 2 234555666666677777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 323 DYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 323 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
+.+.+.. +.+..++..++.+|...|++++|...++++.+.. |.+...+..+.
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 6666542 3355666666666667777777777777666653 44444444444
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=2e-25 Score=219.37 Aligned_cols=433 Identities=12% Similarity=0.043 Sum_probs=327.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS 150 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (534)
....+..++..+.+.|++++|+..|+.+...+|.++.++..++.++.+.|++++|.+.++++.+.+ +.+...+..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999998874 4468889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHh
Q 047017 151 LCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVI 230 (534)
Q Consensus 151 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 230 (534)
+...|++++|...|+. .... |+. ....+..+...+....|...++.+.....+ ......|+
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~------------~~~~~~~~-- 163 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEG------------RGSQVLPS-- 163 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------------------CCCCC--
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCcc------------ccccccch--
Confidence 9999999999999974 3322 221 112233444455556677766665110000 00111222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHh--------CCChhHHHHHHHHHHHCCCCCCH--
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV-TYSILISSLCR--------DGKTEDAVDVLRAAKEKGLTPDA-- 299 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-- 299 (534)
...+..+....+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+.... +.
T Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 164 --NTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp --HHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred --HhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 23344455566666665554333221 11211 22233322222 24789999999999876422 32
Q ss_pred -----hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 300 -----YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 300 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
..+..+...+...|++++|...++.+.... |+...+..+...+...|++++|+..++++.+.. |.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 246667788889999999999999999874 558889999999999999999999999998875 778899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR 454 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 454 (534)
++..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999863 3356788899999999999999999999998863 3457788999999999999
Q ss_pred hHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 455 INESIEVLAAMFEKGCK-----PNETTYVLLIEGIGYG----------GWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
+++|...++++++..+. .....+......+... |++++|...++++++..|.++.++..++.+|.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999874311 1223344556777777 99999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhcc
Q 047017 520 LLDVYKEISHLATK 533 (534)
Q Consensus 520 ~~~~~~~~~~~~~k 533 (534)
..|++++|...+.+
T Consensus 474 ~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 474 QMEKIDEAIELFED 487 (537)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 99999999988754
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=2.5e-20 Score=180.07 Aligned_cols=364 Identities=11% Similarity=0.033 Sum_probs=196.7
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh----cCCHHHHHH
Q 047017 56 SLYFIESMVANGCKPDVVMCTKLIKKFFQ----ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK----ANQIELANK 127 (534)
Q Consensus 56 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 127 (534)
++..++...+.+ +..++..+...+.. .+++++|..+|+...+. .++.++..+...|.. .+++++|.+
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 345555554433 56666666666666 66677777777666653 345566666666666 666677777
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHH
Q 047017 128 VLDRLRSRGFSPDVVTYNIMIGSLCS----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATML----EGQTDKAMKLL 199 (534)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 199 (534)
.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 776666543 45555556666665 566666666666666544 34455555555554 44455444444
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN----MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
++. .+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.
T Consensus 175 ~~a------------------~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 175 SKA------------------AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYY 230 (490)
T ss_dssp HHH------------------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHH------------------HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 443 3332 45555555555555 566666666666655543 3444555555554
Q ss_pred h----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 047017 276 R----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKN 347 (534)
Q Consensus 276 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (534)
. .+++++|..+|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|...
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~ 304 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKG 304 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcC
Confidence 3 555666666665555543 33444445555554 555555555555555442 334444455555544
Q ss_pred -----CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 047017 348 -----GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG---DKIRALGMISEMLSKGIEPDEITYNSLISCLCR--- 416 (534)
Q Consensus 348 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 416 (534)
+++++|+.+|++..+.+ +...+..+...|...| ++++|+..+++..+.+ +...+..+...|..
T Consensus 305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 378 (490)
T 2xm6_A 305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG 378 (490)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 55555555555555543 3344444554444433 4455555555555432 34444455555554
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 047017 417 -DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESIEVLAAMFEKG 469 (534)
Q Consensus 417 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 469 (534)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|+++.+.+
T Consensus 379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 455555555555555432 33444445555544 455555555555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=8.8e-22 Score=182.65 Aligned_cols=325 Identities=17% Similarity=0.138 Sum_probs=271.7
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 175 TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 175 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
++..+..++..+...|++++|...|+++ .... +.+...+..+..++...|++++|...+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~------------------l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAA------------------VDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3556778888888999999998888876 3332 34678899999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCHhcHHHH------------HHHHHhcCCHHHHHH
Q 047017 255 MISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT--PDAYSYDPL------------ISAYCKDGRLDLAIE 320 (534)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~ 320 (534)
+.+.. +.+...+..+...+...|++++|...++.+.+.... .+...+..+ ...+...|++++|..
T Consensus 63 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 63 VIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99874 336788999999999999999999999999986420 234444444 578889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 321 FLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI 400 (534)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 400 (534)
.++++.+.. +.+...+..++..+...|++++|...++++.+.. |.+...+..++..+...|++++|...++++.+..
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 218 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 218 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 999999874 5678889999999999999999999999999875 7788999999999999999999999999998753
Q ss_pred CCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHH
Q 047017 401 EPDEITYN------------SLISCLCRDGMVDEAVGLLVDMESTRFRPTV----ISYNIIILGFCKTRRINESIEVLAA 464 (534)
Q Consensus 401 ~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 464 (534)
+.+...+. .++..+...|++++|...++++.+.... +. ..+..+..++...|++++|...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 23333333 2366788999999999999999875322 22 2355678899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
+++.. +.+..++..++.++...|++++|...++++++..|.++.++..+.+++...++.
T Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 298 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 99975 337889999999999999999999999999999999999999999888776654
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=3.3e-20 Score=179.22 Aligned_cols=379 Identities=11% Similarity=0.032 Sum_probs=297.4
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----CCCHHHHHHH
Q 047017 92 VRVMEILEKYGEPDVFAYNALISGFCK----ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS----RGMIESAFKV 163 (534)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 163 (534)
...++.... +.++.++..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.
T Consensus 27 ~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 27 LEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 444444443 4577788888888887 788999999999888764 56777788888887 8889999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 164 FDQLLRDNCKPTVITYTILIQATML----EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
|++..+.| +...+..|...|.. .+++++|...|++. ...+ ++..+..+...|
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a------------------~~~~---~~~a~~~Lg~~y 157 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA------------------AEQG---RDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------------HHTT---CHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------------HHCC---CHHHHHHHHHHH
Confidence 99888765 55677778888887 78899999998876 3332 566777788888
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh
Q 047017 240 LN----MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK 311 (534)
Q Consensus 240 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (534)
.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..+.+ ++..+..+...|..
T Consensus 158 ~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 231 (490)
T 2xm6_A 158 FEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYF 231 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 77 788999999998888764 66777888888877 788999999998888764 56677777777776
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-
Q 047017 312 ----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSS- 382 (534)
Q Consensus 312 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 382 (534)
.+++++|..+|++..+.+ +...+..+...|.. .++.++|+.+|++..+.+ ++..+..+...|...
T Consensus 232 g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 232 GIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 788899999998888764 55667777777777 788999999999888764 566777788888776
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 047017 383 ----GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG---MVDEAVGLLVDMESTRFRPTVISYNIIILGFCK---- 451 (534)
Q Consensus 383 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 451 (534)
+++++|...+++..+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+...|..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 88999999998888864 4556777777777756 7888999998888753 56777888888887
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC---chHHHHHHHhhcch
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGY----GGWRAEAMELANALVSMHAI---SRDTFKRLNRTFPL 520 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 520 (534)
.+++++|...++++.+.+ +...+..+...|.. .+++++|..+|+++.+.++. ++.+...++.++..
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 788999999999888865 46777788888887 78999999999999998854 67778888877764
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=1.3e-21 Score=181.47 Aligned_cols=328 Identities=13% Similarity=0.095 Sum_probs=202.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++++.. +.+..++..++.++...|++++|...++.+....|.+..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4567778888889999999999999888765 567888888888889999999999999998888888888888889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC----ChhhHHHH------------HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSP----DVVTYNIM------------IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
...|++++|...|+++.+. .| +...+..+ ...+...|++++|...++++.+.. +.+...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 9999999999999888876 34 33444444 355666666666666666666554 44555666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL 260 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 260 (534)
.++.++...|++++|...++++ ... .+.+...+..+...+...|++++|...++.+.+...
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~------------------~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAA------------------SKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 6666666666666666665554 222 123455566666666666666666666666655421
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 047017 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDI----VN 336 (534)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 336 (534)
. +...+..+... . .......++..+...|++++|...++++.+.. +.+. ..
T Consensus 220 ~-~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 274 (359)
T 3ieg_A 220 D-HKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRS 274 (359)
T ss_dssp T-CHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHH
T ss_pred c-chHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHH
Confidence 1 22211111000 0 00011122444555666666666666655542 1122 12
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
+..+..++...|++++|+..++++.+.. |.+..++..++.++...|++++|...++++.+.. +.+...+..+..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3345556666666666666666665543 4455666666666666666666666666666542 22344444444443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=6.4e-20 Score=179.08 Aligned_cols=433 Identities=10% Similarity=0.029 Sum_probs=270.3
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047017 61 ESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD 140 (534)
Q Consensus 61 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 140 (534)
++.++.. |.+..+|..++.. .+.|++++|..+|+.+....|.+...|..++..+.+.|++++|..+|++++.. .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 3444433 4456666666653 55666666666666666666666666666666666666666666666666655 345
Q ss_pred hhhHHHHHHHH-HcCCCHHHHHH----HHHHHHhC-CCC-CCHhhHHHHHHHHHh---------cCCHhHHHHHHHHhcc
Q 047017 141 VVTYNIMIGSL-CSRGMIESAFK----VFDQLLRD-NCK-PTVITYTILIQATML---------EGQTDKAMKLLDEMGM 204 (534)
Q Consensus 141 ~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 204 (534)
...|..++... ...|+.++|.+ +|+..+.. |.. ++...|...+..... .|+++.|..+|++...
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55555555322 23455544443 55554432 222 234455555544433 3455555555555422
Q ss_pred cccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC--------hhhH
Q 047017 205 CKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEM------ISRG---LEPN--------VVTY 267 (534)
Q Consensus 205 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~ 267 (534)
.........+..+..+... .+..+...++. ...+++..|..++..+ .+.. ++|+ ...|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~---~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEG---INIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHH---HCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHh---hchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 1111111111111111100 00001111110 1234566666666552 2211 2333 1344
Q ss_pred HHHHHHHHhC----CCh----hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh-------cCCHH-------HHHHHHHHH
Q 047017 268 SILISSLCRD----GKT----EDAVDVLRAAKEKGLTPDAYSYDPLISAYCK-------DGRLD-------LAIEFLDYM 325 (534)
Q Consensus 268 ~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~ 325 (534)
...+...... ++. ..+..+|+++.... +.++..|...+..+.+ .|+++ +|..++++.
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4444332221 232 36778888888763 4467788888887775 68877 899999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047017 326 ISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV-SSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDE 404 (534)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 404 (534)
++.-.+.+...|..++..+.+.|++++|..+|+++.+.. |.+. ..|..++..+.+.|++++|..+|++..+.. +.+.
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCch
Confidence 863235568889999999999999999999999999863 3343 578888888889999999999999998752 2233
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--CHHHHHHH
Q 047017 405 ITYNSLISC-LCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGC-KP--NETTYVLL 480 (534)
Q Consensus 405 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l 480 (534)
..+...+.. +...|++++|..+|++..+.. +.+...|..++..+...|+.++|..+|++++..+. .| ....|...
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332222 336899999999999988753 33678889999999999999999999999998643 22 25578888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 481 IEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+......|+.+.+..+++++.+..|.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 88888899999999999999998874
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.5e-21 Score=178.87 Aligned_cols=293 Identities=11% Similarity=0.002 Sum_probs=255.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPL 305 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (534)
+.+...+..++..+...|++++|+.+++++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4566778888999999999999999999999874 3366777788889999999999999999999874 3467788899
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 306 ISAYCKDG-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 306 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
...+...| ++++|...++++.... +.+...+..++..+...|++++|+..++++.+.. |.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999874 5567889999999999999999999999998875 6677888889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR--------FRPTVISYNIIILGFCKTRRIN 456 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 456 (534)
+++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999863 4567889999999999999999999999987631 1334678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc-chHHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF-PLLDVY 524 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 524 (534)
+|...++++++..+ .+...+..++.++...|++++|.+.++++++..|.++.++..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999998753 36788899999999999999999999999999999999999999988 455543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=7.8e-20 Score=178.48 Aligned_cols=415 Identities=10% Similarity=0.027 Sum_probs=300.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 047017 95 MEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP 174 (534)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 174 (534)
|+...+.+|.+..+|..++.. .+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++... |
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 566777779999999999984 78999999999999999872 4467789999999999999999999999999874 5
Q ss_pred CHhhHHHHHHHH-HhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH-cCCC-CCHhhHHHHHHHHHh---------c
Q 047017 175 TVITYTILIQAT-MLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES-RGCQ-PDVISYNMLLRTLLN---------M 242 (534)
Q Consensus 175 ~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~ 242 (534)
+...|..++... ...|++++|.+.+..+ |+.... .|.. ++...|...+..... .
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~--------------~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 143 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQA--------------YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN 143 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHH--------------HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHH--------------HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH
Confidence 777777777533 3467777766533322 222222 2333 345667777766554 6
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-------------HhCCChhHHHHHHHHHH------HCC---CCCCH-
Q 047017 243 GKWEEGEKLMTEMISRGLEPNVVTYSILISSL-------------CRDGKTEDAVDVLRAAK------EKG---LTPDA- 299 (534)
Q Consensus 243 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~- 299 (534)
|+++.|..+|++.+.....+....|....... ...+++..|..++.... +.. ++|+.
T Consensus 144 ~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 144 QRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred hHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 88999999999998742111123333322211 12345677777776532 221 23331
Q ss_pred -------hcHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------CCCHH------
Q 047017 300 -------YSYDPLISAYCKD----GRL----DLAIEFLDYMISDGCLPDIVNYNTILAAFCK-------NGNAD------ 351 (534)
Q Consensus 300 -------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~------ 351 (534)
..|...+...... ++. +.+..+|++++... +.++..|..++..+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 2333333222221 232 47788999988863 5578888888888875 78887
Q ss_pred -HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHH
Q 047017 352 -QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPD-E-ITYNSLISCLCRDGMVDEAVGLLV 428 (534)
Q Consensus 352 -~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~ 428 (534)
+|..+|++..+.-.|.+...|..++..+...|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|+
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999999987323667889999999999999999999999999985 443 3 578888888889999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc
Q 047017 429 DMESTRFRPTVISYNIIILG-FCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS 507 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 507 (534)
+..+.. +.+...|...+.. +...|++++|..+|+++++..+ .+...|..++..+.+.|+.++|+.+|++++...|.+
T Consensus 381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 998752 2233334333322 3368999999999999998743 368899999999999999999999999999988766
Q ss_pred hH----HHHHHHhhcchHHHHHHhhhhhc
Q 047017 508 RD----TFKRLNRTFPLLDVYKEISHLAT 532 (534)
Q Consensus 508 ~~----~~~~l~~~~~~~~~~~~~~~~~~ 532 (534)
+. .|...+......|+.+.+..+..
T Consensus 459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 459 PEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp GGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 54 77777777777787777776643
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.3e-20 Score=172.58 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=160.3
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
..+...+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+....|.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3455566677777777777777777777776654 445566666667777777777777777777777676777777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 047017 114 SGFCKAN-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 114 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
..+...| ++++|.+.|+++.+.. +.+...|..+..++...|++++|...++++.+.. +.+...+..++..|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777776652 2245666667777777777777777777776654 33445555566666666666
Q ss_pred hHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------CCCh
Q 047017 193 DKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL--------EPNV 264 (534)
Q Consensus 193 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~ 264 (534)
++|...++++ ... .+.+...+..+...+...|++++|...++++..... +...
T Consensus 176 ~~A~~~~~~a------------------l~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 176 KLAERFFSQA------------------LSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp HHHHHHHHHH------------------HTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred HHHHHHHHHH------------------HHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 6666666554 222 123445556666666666666666666665554310 1123
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (534)
.++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 344444444445555555555554444432 11333444444444444444444444444443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=7.4e-21 Score=177.12 Aligned_cols=291 Identities=14% Similarity=0.068 Sum_probs=228.6
Q ss_pred HHhcCCHHHHHH-HHHHHHHCCCC-C--ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 239 LLNMGKWEEGEK-LMTEMISRGLE-P--NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 239 ~~~~~~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
+...|++++|.. .+++....... | +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888887 77765544211 1 34567888888889999999999999988874 3467788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH---------------HHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT---------------MFSAL 379 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 379 (534)
+++|...++++.+.. +.+..++..++.++...|++++|+..++++.... |.+...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999888874 5577888888999999999999999999988764 444433321 13334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 380 WSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
...|++++|...++++.+..... +..++..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998753221 57888999999999999999999999998763 33577899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc-----------hHHHHHHHhhcchHHHHHHh
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS-----------RDTFKRLNRTFPLLDVYKEI 527 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~~ 527 (534)
...++++++.. +.+..++..++.++...|++++|...++++++..|.. ..++..++.+|...|+++++
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999999875 3468889999999999999999999999999988877 78999999999999999999
Q ss_pred hhhhccC
Q 047017 528 SHLATKD 534 (534)
Q Consensus 528 ~~~~~k~ 534 (534)
..+..++
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9887764
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=9.8e-18 Score=169.36 Aligned_cols=412 Identities=12% Similarity=0.139 Sum_probs=298.9
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGC--KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
+.+|......+++|...|.+.+|+++++++...+- ..+....+.++.+.++. +..+...+.+..... ....
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------d~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------DAPD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------cHHH
Confidence 45666777889999999999999999999985421 13445566677666666 455666655555422 2445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++..+...|.+++|..+|++... .....+.++ ...|++++|.++.++. .+..+|..++.++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 78889999999999999999631 222223332 2778899999998865 246788899999999999
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILI 271 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 271 (534)
+++|++.|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++
T Consensus 1121 ~kEAIdsYiKA------------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred HHHHHHHHHhc------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 99999998764 367778889999999999999999998877764 3444444588
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 047017 272 SSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNAD 351 (534)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (534)
.+|++.+++++...+. + .++...+..++..|...|++++|..+|..+ ..|..++.++.+.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8888888887544332 2 335566777889999999999999999875 36888999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 352 QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDME 431 (534)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 431 (534)
.|++.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999998877 2568888888899988888888876654 23356667788888999999999999998887
Q ss_pred hCCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 432 STRFRPTVISYNIIILGFCKT--RRINESIEVLAAMFEKGCKP------NETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 432 ~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
... +-....|+.+..++.+. ++..++.++|..-. +++| +...|..++-.|.+.|+++.|....-.-...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 653 33455676666666653 34455555554332 2222 4567888888888999999888433222211
Q ss_pred ------------CCCchHHHHHHHhhcchHH
Q 047017 504 ------------HAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 504 ------------~~~~~~~~~~l~~~~~~~~ 522 (534)
.+.+++.+++.+..|....
T Consensus 1385 a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1385 AWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4567788887777776544
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.4e-18 Score=167.60 Aligned_cols=376 Identities=11% Similarity=-0.027 Sum_probs=224.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----
Q 047017 105 DVFAYNALISGFCKANQIELANKVLDRLRSR-----G---FSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN----- 171 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 171 (534)
....|+.+...+...|++++|++.|++..+. + -+....+|..+..+|...|++++|...++++.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456677777777777777777777665432 0 12234567777788888888888888777765421
Q ss_pred --CCCCHhhHHHHHHHHHhc--CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH---HHhcCC
Q 047017 172 --CKPTVITYTILIQATMLE--GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRT---LLNMGK 244 (534)
Q Consensus 172 --~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~ 244 (534)
......++..+..++... +++++|+..|+++ .... +.++..+..+..+ +...++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~ka------------------l~~~-p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA------------------LEKK-PKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHH------------------HHHS-TTCHHHHHHHHHHHHHHHHSCC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHH------------------HHhC-CCCHHHHHHHHHHHHHhcCchH
Confidence 012234555555554443 3566666666654 4432 2244455444444 345677
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHH
Q 047017 245 WEEGEKLMTEMISRGLEPNVVTYSILISSLC----RDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIE 320 (534)
Q Consensus 245 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 320 (534)
.++|++.+++.++.. +.+...+..+...+. ..+++++|...+++..... +.+...+..++..|...|++++|..
T Consensus 191 ~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp CCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHH
Confidence 778888888887764 224555555554443 3467788888888887764 3466778888888888999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 047017 321 FLDYMISDGCLPDIVNYNTILAAFCKN-------------------GNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS 381 (534)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (534)
.++++.+.. +.+..++..+..+|... +..+.|...++++.+.. |.+..++..+...+..
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 988888764 44566666666555322 23567777888777764 6677788888889999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 382 SGDKIRALGMISEMLSKGIEPDE--ITYNSLIS-CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
.|++++|+..|+++++....+.. ..+..+.. .....|++++|+..+++..+. .|+...... ....+
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l 415 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKL 415 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHH
Confidence 99999999999888876433322 12233332 234678889999999888874 444332222 22344
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 515 (534)
..++++.++.+ +.+..++..++.++...|++++|++.|+++++.++..|.+...+|
T Consensus 416 ~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 416 QKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 55666666654 336778888888899999999999999999998888887766554
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.3e-19 Score=169.12 Aligned_cols=367 Identities=11% Similarity=0.009 Sum_probs=260.1
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChH
Q 047017 140 DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--------NCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVG 211 (534)
Q Consensus 140 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 211 (534)
....|+.+..++...|++++|++.|++..+. ..+....+|..++.+|...|++++|...++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka--------- 120 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV--------- 120 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH---------
Confidence 4667899999999999999999999987652 12345678999999999999999999998875
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH---HHhCCChhHHHHH
Q 047017 212 QAFQFVRSLESRGCQPDVISYNMLLRTLLN--MGKWEEGEKLMTEMISRGLEPNVVTYSILISS---LCRDGKTEDAVDV 286 (534)
Q Consensus 212 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~ 286 (534)
..+..............++..+..++.. .+++++|+..|++.++..+. ++..+..+..+ +...++.++|++.
T Consensus 121 --~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 121 --KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp --HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred --HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 2222222111112234566666666654 45799999999999987422 45555555444 4456888999999
Q ss_pred HHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 287 LRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
++++.+.+ +.+...+..+...+.. .+++++|...+++..... +.+..++..++..|...|++++|+..++++.+
T Consensus 198 ~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 198 LRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99988864 3355566656555544 467889999999988874 56778899999999999999999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 363 VGCPPNVSSYNTMFSALWSS-------------------GDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
.. |.+..++..+..+|... +.++.|...+++..+.. +.+...+..+..++...|++++|
T Consensus 276 ~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 276 YI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHH
Confidence 75 66777887777665432 23567777787777653 33456778889999999999999
Q ss_pred HHHHHHHHhCCCCCCh--hhHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTV--ISYNIIIL-GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
...|++..+....+.. ..+..+.. .....|++++|+..++++++.. |+..... +....+.+++++.
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHH
Confidence 9999999876433322 12233332 2346789999999999998864 3332222 2234567788889
Q ss_pred HHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 501 VSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 501 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++.+|..+.++..++.+|...|++++|.+.++|
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999998876
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=7.7e-20 Score=170.20 Aligned_cols=254 Identities=11% Similarity=0.005 Sum_probs=125.7
Q ss_pred cCCHhHHHH-HHHHHHHcCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHH
Q 047017 85 ERKSNKAVR-VMEILEKYGEPD----VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIES 159 (534)
Q Consensus 85 ~~~~~~a~~-~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 159 (534)
.|++++|.. .++......+.+ ...+..++..+...|++++|...|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 665554443222 3456666666666677777777766666652 2345566666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHH-----
Q 047017 160 AFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNM----- 234 (534)
Q Consensus 160 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 234 (534)
|...|+++.+.. +.+..++..++.++...|++++|...++++ ..... .+...+..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~~~-~~~~~~~~~~~~~ 176 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW------------------LRYTP-AYAHLVTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHTST-TTGGGCC------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCc-CcHHHHHHHHHHh
Confidence 777776666654 455666666666666666666666666654 22211 11111110
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 235 ----------LLRTLLNMGKWEEGEKLMTEMISRGLEP-NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 235 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
.+..+...|++++|...++++....... +..++..++..+...|++++|...++++.+.. +.+...+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 255 (368)
T 1fch_A 177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 255 (368)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 1111224555555555555555442111 24444455555555555555555555544432 22334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 047017 304 PLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS 361 (534)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 361 (534)
.++..+...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444445555555555554444432 2234444444444444444444444444443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=5.3e-20 Score=171.01 Aligned_cols=264 Identities=13% Similarity=0.019 Sum_probs=162.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFC 345 (534)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 345 (534)
.+..++..+...|++++|...|+++.+.. +.+...+..++.++...|++++|...|+++.+.. +.+..++..++.+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555542 2244455555555555556666665555555542 334555555566666
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCH----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNV----------SSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PDEITYNSLISCL 414 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 414 (534)
..|++++|+..++++.+.. |.+. ..+..+...+...|++++|...++++.+.... ++..++..++.++
T Consensus 145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 6666666666666555432 2122 22233466677777777777777777765211 1466777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...|++++|...++++.+.. +.+..+|..++.+|...|++++|...++++++..+ .+..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHH
Confidence 77788888888877777652 33566777777778888888888888888777642 25677777777888888888888
Q ss_pred HHHHHHHHcCCC------------chHHHHHHHhhcchHHHHHHhhhhhccC
Q 047017 495 ELANALVSMHAI------------SRDTFKRLNRTFPLLDVYKEISHLATKD 534 (534)
Q Consensus 495 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~~~~~k~ 534 (534)
..++++++..|. ....+..++.++...|+.+.+..+..+|
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 888888776654 3567777888888888877777765543
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=3.8e-17 Score=165.11 Aligned_cols=266 Identities=16% Similarity=0.133 Sum_probs=217.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 307 (534)
++.+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.+....+.. +++.....++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 5788999999999999999999999664 377889999999999999999999999988764 34444456899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 047017 308 AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIR 387 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (534)
+|.+.++++....+ ++ .++...+..++..|...|++++|..+|..+ ..|..++.++.+.|++++
T Consensus 1176 aYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHH
Confidence 99999998864433 22 346667778999999999999999999985 378999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047017 388 ALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 388 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 467 (534)
|.+.+++. .+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+.
T Consensus 1240 AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1240 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876 35688999999999999999999876543 34667778999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC-----CchHHHHHHHhhcchHHHHHHhhh
Q 047017 468 KGCKPNETTYVLLIEGIGYG--GWRAEAMELANALVSMHA-----ISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 468 ~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
.. +-....|..+...+.+. ++..++.++|..-....+ .....|..+.-.|...++|+.|..
T Consensus 1309 Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1309 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred cC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 65 33566777777666654 566677777766655544 456789999999999999998873
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=4.5e-19 Score=162.09 Aligned_cols=262 Identities=10% Similarity=-0.006 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYC 310 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (534)
.+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555555442 1234444455555555555555555555554432 223344444444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHH--------------H
Q 047017 311 KDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTM--------------F 376 (534)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~ 376 (534)
..|++++|...++++... . |.+...+..+ .
T Consensus 101 ~~~~~~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS-----------------------------------Q-PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT-----------------------------------S-TTTTTC-------------------
T ss_pred HcCCHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555555555444443 2 2222222222 2
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 377 S-ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 377 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
. .+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 2 2556677777777777777653 3356677777777778888888888887776652 33566777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC------------chHHHHHHHhhcchHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI------------SRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~ 523 (534)
++|...++++++..+ .+..++..++.++...|++++|.+.++++++..|. .+..+..++.++...|+
T Consensus 223 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 223 QEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 888888888877642 35677777888888888888888888888887777 67788888888888888
Q ss_pred HHHhhhhhcc
Q 047017 524 YKEISHLATK 533 (534)
Q Consensus 524 ~~~~~~~~~k 533 (534)
+++|..++.+
T Consensus 302 ~~~A~~~~~~ 311 (327)
T 3cv0_A 302 PDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=3.1e-19 Score=165.83 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|..+...+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..|+.+....|.+..++..++.++.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666666666666666666665543 4455566666666666666666666666666655556666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-hhh----------HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH
Q 047017 118 KANQIELANKVLDRLRSRGFSPD-VVT----------YNIMIGSLCSRGMIESAFKVFDQLLRDNCKP--TVITYTILIQ 184 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 184 (534)
..|++++|.+.|+++.+. .|+ ... +..+...+...|++++|...|+++.+.. +. +..++..++.
T Consensus 145 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 666666666666665543 121 111 1223445555555555555555555443 22 3445555555
Q ss_pred HHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047017 185 ATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV 264 (534)
Q Consensus 185 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 264 (534)
.|...|++++|+..++++ ... .+.+..++..++.++...|++++|+..|+++.+.. +.+.
T Consensus 222 ~~~~~g~~~~A~~~~~~a------------------l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 281 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAA------------------LTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFI 281 (365)
T ss_dssp HHHHHTCHHHHHHHHHHH------------------HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHCCCHHHHHHHHHHH------------------HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCch
Confidence 555555555555555443 211 12234445555555555555555555555554432 1134
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
.++..+..+|...|++++|...++++.+
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444455555555555555544443
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.4e-18 Score=154.61 Aligned_cols=276 Identities=13% Similarity=0.097 Sum_probs=215.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-....|++..|+..++.+......+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34556899999999887765442221133556678889999999998876644 13456677788888888899999
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGC-LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+|++.++++...+. +.+...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999887653 44567777888899999999999998886 568888999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 396 LSKGIEPDEITY---NSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 396 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++...|++++|...++++++..+ .
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 8763 443211 22334444568999999999999886 355788899999999999999999999999998764 3
Q ss_pred CHHHHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhh
Q 047017 473 NETTYVLLIEGIGYGGWRAE-AMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHL 530 (534)
Q Consensus 473 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 530 (534)
+..++..++..+...|+.++ +.++++++++.+|.++.+.. ...+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 78889999999999999876 67899999999999996654 45556666666543
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=1.6e-18 Score=158.37 Aligned_cols=234 Identities=13% Similarity=-0.015 Sum_probs=160.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|...++.+.+..|.+..++..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45567888899999999999999999998875 56788899999999999999999999999999988899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIM--------------IG-SLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 999999999999999998773 2233333333 22 2555666677777776666554 44556666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGL 260 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 260 (534)
.++..+...|++++|...++++ .... +.+...+..+...+...|++++|...++++.+..
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRA------------------VELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhccHHHHHHHHHHH------------------HHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 6666666666666666666554 2221 2244555555666666666666666666655542
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 261 EPNVVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
+.+...+..+...+...|++++|...++++.+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22344555555555555555555555555544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.8e-18 Score=155.43 Aligned_cols=380 Identities=13% Similarity=0.081 Sum_probs=181.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 49 RAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|++++|..+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5778999999999882 3459999999999999999999999753 4777899999999999999999998
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccC
Q 047017 129 LDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKG 208 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 208 (534)
++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 8887765 5567888899999999999999888874 467779999999999999999999999865
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHH
Q 047017 209 MVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLR 288 (534)
Q Consensus 209 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (534)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|.....
T Consensus 149 ---------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 149 ---------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp ---------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred ---------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 36889999999999999999999988 278899999999999999999965554
Q ss_pred HHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh-hCCCCC
Q 047017 289 AAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLS-DVGCPP 367 (534)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~ 367 (534)
. +...+.....++..|.+.|.+++|..+++..+... +-....|..+..+|++-+ +++..+.++... +.++||
T Consensus 202 ~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 202 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp T-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHH
T ss_pred H-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcH
Confidence 3 22345556678889999999999999999998765 456677888887777653 444444444332 223343
Q ss_pred ------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 368 ------NVSSYNTMFSALWSSGDKIRALGMISEMLSKG-----------IEPDEITYNSLISCLCRDGMVDEAVGLLVDM 430 (534)
Q Consensus 368 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 430 (534)
+...|..+...|...++++.|....-+-.... -..+...|...+..|.. ..+..--.++.-+
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~-~~p~~l~~ll~~l 353 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE-FKPLLLNDLLMVL 353 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH-HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 56788899999999999998876433211110 02234455555555552 1222222222222
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 431 ESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 431 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
...+. .+..+..+.+.|+..-+..++..+...+ +..+-.++-..|...++++.-+...+
T Consensus 354 -~~~ld-----~~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 354 -SPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp -GGGCC-----HHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -HhccC-----cHHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11111 2445566677777777777777666543 44555566677777777776554443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2.2e-18 Score=156.09 Aligned_cols=283 Identities=12% Similarity=0.110 Sum_probs=136.4
Q ss_pred hcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 047017 84 QERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKV 163 (534)
Q Consensus 84 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 163 (534)
+.|++++|.+.++++. .+.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..
T Consensus 15 ~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5688999999999983 3459999999999999999999999763 4777999999999999999999998
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047017 164 FDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG 243 (534)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (534)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------------------~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------------------------GPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------------------------CC----------------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------------------------CCcHHHHHHHHHHHHHcC
Confidence 8877764 4557788999999999999998876653 356679999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHH
Q 047017 244 KWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLD 323 (534)
Q Consensus 244 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (534)
.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999966 47999999999999999999999988 278899999999999999999966554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 047017 324 YMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK-GIEP 402 (534)
Q Consensus 324 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 402 (534)
.+ ...+.-...++..|.+.|.+++|+.+++...... +.....|+.+..+|++- .+++.++.++...+. +++|
T Consensus 202 ~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 202 HI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHH
T ss_pred HH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcH
Confidence 32 2344446678899999999999999999998876 77788899888888765 344444444433222 2333
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHH
Q 047017 403 ------DEITYNSLISCLCRDGMVDEAVGL 426 (534)
Q Consensus 403 ------~~~~~~~l~~~~~~~g~~~~A~~~ 426 (534)
+...|..+...|...++++.|...
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 346788899999999999988764
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.2e-18 Score=151.50 Aligned_cols=247 Identities=11% Similarity=0.051 Sum_probs=203.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC--HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPD--AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG 348 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (534)
++.....|++..|+..++.+... .|+ ......+..+|...|+++.|+..++. . .+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 233 23456678999999999999987654 2 3567788889999999999
Q ss_pred CHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 349 NADQALEIFEKLSDVGC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 349 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
+.++|++.++++...+. |.+...+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999987653 66777888888999999999999999987 467888999999999999999999999
Q ss_pred HHHHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 428 VDMESTRFRPTVISY---NIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+++.+. .|+.... ..++..+...|++++|..+|+++++.. +.+...+..++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999886 3443211 123344445699999999999999974 4588899999999999999999999999999999
Q ss_pred CCchHHHHHHHhhcchHHHHHH-hhhhhc
Q 047017 505 AISRDTFKRLNRTFPLLDVYKE-ISHLAT 532 (534)
Q Consensus 505 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 532 (534)
|.+++++..++.++...|++.+ +.++++
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999999999876 445543
No 35
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=2.5e-17 Score=156.40 Aligned_cols=348 Identities=13% Similarity=0.034 Sum_probs=203.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH---hHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS---NKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+...+.+.|++++|+++|+++.+.+ +..++..++..+...|+. ++|..+|+..... ++.++..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Confidence 346777888899999999999988765 556677777777778888 8899988888854 6677777777555
Q ss_pred hcC-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 047017 118 KAN-----QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE---SAFKVFDQLLRDNCKPTVITYTILIQATMLE 189 (534)
Q Consensus 118 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (534)
..+ ++++|...|++..+.| +...+..|...|...+... ++.+.+......| +......|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 7788999998888765 2336667777777655433 3445555554444 345566677777777
Q ss_pred CCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhh
Q 047017 190 GQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG---KWEEGEKLMTEMISRGLEPNVVT 266 (534)
Q Consensus 190 g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~ 266 (534)
+.++++......+ ++... ..++..+..+...|...| +.++|+..|++..+.| +++...
T Consensus 155 ~~~~~~~~~a~~~--------------~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~ 215 (452)
T 3e4b_A 155 GTYDQHLDDVERI--------------CKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQR 215 (452)
T ss_dssp TCGGGGHHHHHHH--------------HHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHH
T ss_pred CCcccCHHHHHHH--------------HHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHH
Confidence 7655544432221 22111 123336777777777777 7788888888877776 335554
Q ss_pred HHHHHHHHHhC----CChhHHHHHHHHHHHCCCCCCHhcHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047017 267 YSILISSLCRD----GKTEDAVDVLRAAKEKGLTPDAYSYDPLISA-Y--CKDGRLDLAIEFLDYMISDGCLPDIVNYNT 339 (534)
Q Consensus 267 ~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (534)
+..+...|... +++++|..+|++.. .+ ++..+..+... + ...+++++|...|++..+.+ +...+..
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~ 288 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELL 288 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 45566666443 57778888887776 32 45556666665 3 35677777777777777665 5566666
Q ss_pred HHHHHHhCC-----CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 340 ILAAFCKNG-----NADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 340 l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
+...|. .| ++++|+.+|++.. . .++.....+...|.. ..++++|...|++..+.|. ......+
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~L 360 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAI 360 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHH
Confidence 666665 33 7777777777766 3 355666666666654 3366677777776666542 2333444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCC
Q 047017 411 ISCLCR----DGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 411 ~~~~~~----~g~~~~A~~~~~~~~~~~ 434 (534)
..+|.. ..++.+|..+|+...+.|
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 445442 345666666666666554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=1.7e-17 Score=141.15 Aligned_cols=198 Identities=15% Similarity=0.026 Sum_probs=142.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
|++...+..+...+...|++++|+..|+++.+.. |.+...+..+..++...|++++|+..++++.+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3455566666666667777777777777766654 5566666667777777777777777777666642 3345566666
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047017 411 ISCLCRD-----------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVL 479 (534)
Q Consensus 411 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 479 (534)
..++... |++++|...+++..+.. +.+...+..+..++...|++++|+..++++++.+ .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 6666666 89999999998888753 2356778888889999999999999999999877 57888889
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 480 LIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
++.++...|++++|+..|+++++.+|.++.++..++.++...|++++|...+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887764
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.79 E-value=8.6e-17 Score=152.74 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=239.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 76 TKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI---ELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 76 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
..+...+.+.|++++|..+|+.+.+.+ ++.++..+...|...|+. ++|.+.|++..+. +...+..+...+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 346777888999999999999988764 455666777788888888 8999999988854 5666777777555
Q ss_pred cCC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC
Q 047017 153 SRG-----MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP 227 (534)
Q Consensus 153 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 227 (534)
..+ ++++|...|++..+.| .+ ..+..|...|...+..+++.+ +...+......+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~---------------a~~~~~~a~~~g--- 139 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVN---------------AQQQISQWQAAG--- 139 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCC---------------HHHHHHHHHHHT---
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHH---------------HHHHHHHHHHCC---
Confidence 554 7889999999998876 33 367778888876665443322 233333334433
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCCCHhcHHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG---KTEDAVDVLRAAKEKGLTPDAYSYDP 304 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (534)
++.....+...|...+.++++......+...-...++..+..+...|...| +.++|+..|++..+.+. ++...+..
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~ 218 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDS 218 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 455677777788777755444444333322211224447788888888888 88888888888888763 35554466
Q ss_pred HHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 305 LISAYCKD----GRLDLAIEFLDYMISDGCLPDIVNYNTILAA-F--CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 305 l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...|... +++++|..+|++.. . -++..+..+... + ...+++++|+.+|++..+.| ++..+..+..
T Consensus 219 Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 219 VARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77777554 68888888888887 3 355666666666 3 45788888998888888765 6777777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 378 ALWSSG-----DKIRALGMISEMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 378 ~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
.|. .| ++++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.| +......|...
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 363 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQL 363 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHH
Confidence 776 44 8888888888776 3 356667777777765 338888888888888765 34445566666
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 449 FCK----TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 449 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
|.. ..++.+|..+++...+.|.. +.......+......++..+|.++.++..+.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 654 45788888888888887632 2222222222222334566677776666554
No 38
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.78 E-value=1.4e-14 Score=141.83 Aligned_cols=448 Identities=10% Similarity=0.011 Sum_probs=315.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC---HHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ---IELANKVL 129 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 129 (534)
..+-+..|++.+..+ +.|...|..++..+...+.++.+..+|+.+....|.....|...+..-.+.|+ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 445566677777765 77999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhCC-CCCChhhHHHHHHHHHcCCCH--------HHHHHHHHHHHhC-CC-CC-CHhhHHHHHHHHHh---------
Q 047017 130 DRLRSRG-FSPDVVTYNIMIGSLCSRGMI--------ESAFKVFDQLLRD-NC-KP-TVITYTILIQATML--------- 188 (534)
Q Consensus 130 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~~--------- 188 (534)
++.+... .+|++..|...+....+.++. +...++|+.++.. |. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998773 137888998888766655543 3455788877653 54 34 34677777665432
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----C-
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR--GL----E- 261 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~- 261 (534)
.++++.+..+|+++......+.+..+..|......- +..+...++.- ...+++.|...+.++... ++ +
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 345677888888876554555666665555554431 11111111111 122445555555543221 11 1
Q ss_pred ----------C--C------hhhHHHHHHHHHhCC-------ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 262 ----------P--N------VVTYSILISSLCRDG-------KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 262 ----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
| + ...|...+..--..+ ..+.+..+|++++.. .+..+..|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 123444444322222 123456778888776 3447788888888888899999
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC----------CCC-----------CHhhHHH
Q 047017 317 LAI-EFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVG----------CPP-----------NVSSYNT 374 (534)
Q Consensus 317 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~-----------~~~~~~~ 374 (534)
.|. .++++.... .+.+...+...+......|+++.|..+|+++.... .|. ...+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999875 45677778888888999999999999999987631 121 2346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRD-GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.+....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|..+|+...+. .+.+...|..++......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7888888899999999999998751112334444443333344 4589999999999876 3446677778888888899
Q ss_pred ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 454 RINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+.|..+|++++.....+ ....|...+..-...|+.+.+..+.+++.+..|.++.
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999999875422 3467778888778899999999999999999998663
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1e-16 Score=140.81 Aligned_cols=240 Identities=14% Similarity=0.048 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC--LPD----IVNYN 338 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 338 (534)
..+..+...+...|++++|...++++.+.. .+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 4555566666666666666666666666555320 011 45667
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
.++..+...|++++|+..|+++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777777777888888777777765 3332 34556677888888888887752 334567778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 047017 419 MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELAN 498 (534)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 498 (534)
++++|...++++.+.. +.+...+..++.++...|++++|...++++++..+ .+...+..++.++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998888753 33677888899999999999999999999988753 367888899999999999999999999
Q ss_pred HHHHcC------CCchHHHHHHHhhc
Q 047017 499 ALVSMH------AISRDTFKRLNRTF 518 (534)
Q Consensus 499 ~~~~~~------~~~~~~~~~l~~~~ 518 (534)
++++.. |.+...+..+.+++
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999988 88888888777664
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=2.4e-16 Score=139.68 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=159.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 047017 266 TYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLP--DIVNYNTILAA 343 (534)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 343 (534)
.+......+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+....+ ....+..++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555556666666666666665543 2234455556666666666666666666665522111 12335666666
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEA 423 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 423 (534)
+...|++++|+..|+++.+.. |.+..++..+...+...|++++|...++++.+. .+.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777776666653 555666777777777777777777777766654 233455566666233344577778
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRR---INESIEVLAAMFEKG-CKPN------ETTYVLLIEGIGYGGWRAEA 493 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 493 (534)
...++++.+.. +.+...+..+..++...|+ +++|...++++++.. ..|+ ..++..++..+...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 77777777652 2235566667777777777 777888887777631 1122 25677888899999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 494 MELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++++++++.+|.++.+...+..+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999998887766543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.75 E-value=1.4e-16 Score=135.32 Aligned_cols=207 Identities=18% Similarity=0.148 Sum_probs=89.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...+..+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+.+.+.+|.+..++..+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444555555555555555555555555443 34455555555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...+. . ... .+...|++++|...|++.++.. |.+...+..+..++...|++++|
T Consensus 83 ~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 554400 0 000 0000044455555554444443 33344444444444444444444
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLC 275 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (534)
+..|+++ .+.. .++..+..+..++...|++++|+..|+++++.. +.+...+..+...+.
T Consensus 138 ~~~~~~a------------------l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 138 EASLKQA------------------LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHH------------------HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHH------------------Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 4444443 2222 234444444444555555555555555544432 113344444444455
Q ss_pred hCCChhHHHHHHHH
Q 047017 276 RDGKTEDAVDVLRA 289 (534)
Q Consensus 276 ~~~~~~~a~~~~~~ 289 (534)
..|++++|...+++
T Consensus 197 ~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 197 LKGKAEEAARAAAL 210 (217)
T ss_dssp C-------------
T ss_pred HccCHHHHHHHHHH
Confidence 55555555544443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.3e-16 Score=138.61 Aligned_cols=221 Identities=12% Similarity=0.068 Sum_probs=193.8
Q ss_pred HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-------Hhh
Q 047017 299 AYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPN-------VSS 371 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~ 371 (534)
...+..++..+...|++++|...++++.+.. .+...+..++.++...|++++|+..++++.+.. |.+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHH
Confidence 3567788899999999999999999999886 688899999999999999999999999987753 222 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
+..+...+...|++++|...++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 889999999999999999999999985 4553 34566788999999999998762 2356678889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.|++++|...++++++..+ .+..++..++.++...|++++|...++++++..|..+.++..++.+|...|++++|...+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999753 378889999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 047017 532 TK 533 (534)
Q Consensus 532 ~k 533 (534)
.+
T Consensus 231 ~~ 232 (258)
T 3uq3_A 231 DA 232 (258)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=3.6e-16 Score=138.86 Aligned_cols=247 Identities=13% Similarity=-0.032 Sum_probs=176.0
Q ss_pred hCCChhHHHHHHHHHHHCCCC---CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 047017 276 RDGKTEDAVDVLRAAKEKGLT---PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQ 352 (534)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (534)
..|++++|+..++++.+.... .+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456777777777777765221 134566677777778888888888888777764 4467777888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 353 ALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMES 432 (534)
Q Consensus 353 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 432 (534)
|+..|+++.+.. |.+...+..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888887764 556778888888888888888888888888774 33333333344455667888999998877766
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 433 TRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP---NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 433 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
.. +++...+ .++..+...++.++|...++++++..... +..++..++.++...|++++|...++++++.+|.+..
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 52 3333333 46667777888888888888886542211 1467788899999999999999999999998886654
Q ss_pred HHHHHHhhcchHHHHHHhhhhh
Q 047017 510 TFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 510 ~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+ +.++...++++++...+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 33 56777889999887764
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.6e-15 Score=134.35 Aligned_cols=236 Identities=10% Similarity=0.051 Sum_probs=134.1
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPD--VVTYNIMIG 149 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 149 (534)
...+...+..+...|++++|+..|+.+.+..|.+..++..++.++...|++++|.+.++++.+.+..++ ...|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666777777776666665321111 223566666
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDV 229 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 229 (534)
++...|++++|...|+++.+.. +.+..++..++.+|...|++++|...++++ ... .+.+.
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~-~~~~~ 142 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ------------------IRP-TTTDP 142 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG------------------CCS-SCCCH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------hhc-CCCcH
Confidence 6666777777777777666654 445566666666666667666666666655 111 12244
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC---hhHHHHHHHHHHHCC-CCCC------H
Q 047017 230 ISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK---TEDAVDVLRAAKEKG-LTPD------A 299 (534)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~ 299 (534)
..+..+...+...+++++|...|+++.+.. +.+...+..+...+...|+ +++|...++++.+.. ..|+ .
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 221 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHH
Confidence 455555523333446666766666666653 2234455555555555555 555666666555431 0111 1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISD 328 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (534)
..+..+...|...|++++|...++++.+.
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 24444555555566666666666655554
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.73 E-value=1.1e-14 Score=128.86 Aligned_cols=228 Identities=12% Similarity=-0.000 Sum_probs=155.6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047017 263 NVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYN 338 (534)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (534)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555556666666666666666666652 244555566666666 666667776666666654 556666
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 339 TILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 339 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777776653 56666667777776 777777777777777654 44556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 411 ISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 411 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666766 777888888887777653 45666677777777 788888888888887764 2566777777
Q ss_pred HHHc----cCCHHHHHHHHHHHHHcCCCch
Q 047017 483 GIGY----GGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 483 ~~~~----~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.|.. .+++++|.++++++.+.+|...
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 7877 7888888888888888876544
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=1.2e-15 Score=140.25 Aligned_cols=249 Identities=13% Similarity=0.122 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047017 265 VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR-LDLAIEFLDYMISDGCLPDIVNYNTILAA 343 (534)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 343 (534)
..|..+...+...|++++|+..++++++.. +.+...|..+..++...|+ +++|+..+++++..+ +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456666677777778888888888777764 2356677777777777785 888888888887764 4466777778888
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 047017 344 FCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR-DGMVDE 422 (534)
Q Consensus 344 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 422 (534)
+...|++++|+..|+++.+.. |.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888888888887775 6677788888888888888888888888887753 3356777777777777 555466
Q ss_pred H-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------
Q 047017 423 A-----VGLLVDMESTRFRPTVISYNIIILGFCKTR--RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG------- 488 (534)
Q Consensus 423 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 488 (534)
| +..+++.+... +.+...|..+..++...| ++++|++.+.++ +.+ +.+...+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 6 47777777653 225667878888887777 688888888887 433 346677778888888764
Q ss_pred --CHHHHHHHHHHH-HHcCCCchHHHHHHHhhcch
Q 047017 489 --WRAEAMELANAL-VSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 489 --~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 520 (534)
..++|+++|+++ ++.+|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 88999888888888776654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=6.8e-16 Score=134.24 Aligned_cols=219 Identities=12% Similarity=0.077 Sum_probs=157.3
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
....+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34455666667777778888887777777653 4466777777788888888888888888877764 557777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 047017 378 ALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE 457 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 457 (534)
.+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887753 3466777888888888899999999888887653 3367778888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
|...++++++... .+..++..++.++...|++++|...++++++..|.++.++..++.+....
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999988753 36788889999999999999999999999999999998888877765543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=3.3e-15 Score=130.70 Aligned_cols=201 Identities=10% Similarity=-0.007 Sum_probs=161.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..|+++.+.. +.+..++..++..+...|++++|...++.+....+.+..++..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5667888888999999999999999988865 557888888999999999999999999999888888888899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988732244 45677788888888899999999888888765 55677778888888888888888
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
...++.+ ... .+.+...+..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~~~------------------~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLF------------------AQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHH------------------HTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777765 322 2345566777777777888888888888877765
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=2.9e-13 Score=132.67 Aligned_cols=427 Identities=11% Similarity=0.028 Sum_probs=295.5
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcC--CCChhhH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYG--EPDVFAY 109 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~~ 109 (534)
.+...|..+++.+.+.+.++.+..+|++++..- |.....|..-+..-.+.|+ ++.+..+|+...... ++++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 367789999999999999999999999999873 7788999999999889999 999999999999887 3899999
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHHHHHhC-CC-CCC-hhhHHHHHHHHHc---------CCCHHHHHHHHHHHHh
Q 047017 110 NALISGFCKANQI--------ELANKVLDRLRSR-GF-SPD-VVTYNIMIGSLCS---------RGMIESAFKVFDQLLR 169 (534)
Q Consensus 110 ~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 169 (534)
...+....+.++. +...++|+..... |. .++ ...|...+..... .++++.+..+|++++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9988877766553 3345788876643 65 554 5678877765442 3456789999999986
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc--CC----C-----------C--C--
Q 047017 170 DNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR--GC----Q-----------P--D-- 228 (534)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~----~-----------~--~-- 228 (534)
........+|......-...+. ..+.+.+.+. ...++.|...+..+... ++ + | +
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~----~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL----SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH----HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred CccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh----hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 4212122334332222111111 1122222221 12333344444332211 10 0 1 0
Q ss_pred ----HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH-HHHHHHHHCCCC
Q 047017 229 ----VISYNMLLRTLLNMG-------KWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV-DVLRAAKEKGLT 296 (534)
Q Consensus 229 ----~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~ 296 (534)
...|...+..--..+ ..+.+..+|++++... +-+...|...+..+...|+.++|. .+|+..... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 123444444333322 1344567788887763 447788888888888899999997 999999875 34
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC-----------CHHHHHHHHHHHHhCCCHHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----------CLP-----------DIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
.+...+...+......|+++.|.++|+.++... .+. ...+|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 466667778888888999999999999988631 111 12467777787788899999999
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 356 IFEKLSDVGCPPNVSSYNTMFSALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 434 (534)
+|..+.+...+.....|...+..-.+.+ +.+.|..+|+..++. .+.+...+..++......|+.+.|..+|++.....
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999987511233455555444444554 589999999999886 45567777888888888999999999999998764
Q ss_pred CCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047017 435 FRP--TVISYNIIILGFCKTRRINESIEVLAAMFEKGC 470 (534)
Q Consensus 435 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 470 (534)
..+ ....|...+..-...|+.+.+..+.+++.+.-+
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 322 345788888888889999999999999998743
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=7.2e-15 Score=128.51 Aligned_cols=211 Identities=14% Similarity=-0.013 Sum_probs=151.1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSAL 379 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 344555566666666666666666666543 3355666666777777777777777777776653 55666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 047017 380 WSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINES 458 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 458 (534)
...|++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776622233 45667777778888888888888888877653 23567777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 459 IEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
..+++++++... .+...+..++..+...|++++|.++++++.+..|.++.....+
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 888888887643 4677777888888888999999999999988888887665543
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=1.2e-14 Score=124.70 Aligned_cols=214 Identities=11% Similarity=0.026 Sum_probs=169.4
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+..++..+...|++++|...++.+.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 44566677777788888888888888877753 4456777788888888888888888888887764 667778888888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 378 ALWSS-GDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 378 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888888732233 35677888888889999999999998887753 33577788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
++|..+++++++..+..+...+..+...+...|+.++|..+++.+.+..|.++.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999998875424677777888888899999999999999999999888766544
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=3.6e-15 Score=136.99 Aligned_cols=253 Identities=8% Similarity=0.034 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK-SNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
...|..+...+...|++++|+..++++++.. +.+..+|+.++.++...|+ +++|+..|+.+...+|.+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4557788888999999999999999999876 6689999999999999997 9999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHhH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATML-EGQTDK 194 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 194 (534)
+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++.+ +.+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999874 3478899999999999999999999999999986 7788999999999988 555566
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG--KWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
|.. +.++..+++..... +.+...|+.+..++...| ++++|++.+..+ +. .+.+...+..++.
T Consensus 254 A~~-------------~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~ 317 (382)
T 2h6f_A 254 AVL-------------EREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVD 317 (382)
T ss_dssp HHH-------------HHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHH
T ss_pred HHH-------------HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHH
Confidence 630 11122233334442 335667888888887777 578888888777 33 2335667777777
Q ss_pred HHHhCC--------C-hhHHHHHHHHH-HHCCCCCCHhcHHHHHHHH
Q 047017 273 SLCRDG--------K-TEDAVDVLRAA-KEKGLTPDAYSYDPLISAY 309 (534)
Q Consensus 273 ~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 309 (534)
+|...| + .++|+.+++.+ .+.+ +.....|..+...+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777653 2 47788888887 5542 22333444444443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=1.3e-15 Score=132.42 Aligned_cols=203 Identities=9% Similarity=0.068 Sum_probs=145.6
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHH
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALI 113 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 113 (534)
......|..+...+...|++++|+..|+++++.. +.+...+..++..+...|++++|...++.+....+.+..++..++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 4566778888888999999999999999998865 567888888999999999999999999999988888888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 047017 114 SGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD 193 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 193 (534)
..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999888763 3467778888888888899999999988888764 556777778888888888888
Q ss_pred HHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 194 KAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 194 ~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+|...++++ .... +.+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~------------------~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAV------------------TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH------------------HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 887777765 2221 235666777777777777777777777777765
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=2.2e-14 Score=122.90 Aligned_cols=202 Identities=11% Similarity=0.031 Sum_probs=126.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+....+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4456666667777777777777777766654 445666667777777777777777777777766666666777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 117 CKA-NQIELANKVLDRLRSRGFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777665222222 4556666666667777777777776666553 4445566666666666666666
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
|...++++ .......+...+..+...+...|+.+.+..+++.+...
T Consensus 166 A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKY------------------QSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHH------------------HHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666554 22211134444555555556666666666666665543
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.69 E-value=1.4e-13 Score=121.90 Aligned_cols=225 Identities=12% Similarity=0.005 Sum_probs=199.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHhcHH
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR----DGKTEDAVDVLRAAKEKGLTPDAYSYD 303 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (534)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56778889999999999999999999998842 56778889999999 999999999999999875 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 047017 304 PLISAYCK----DGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCK----NGNADQALEIFEKLSDVGCPPNVSSYNTM 375 (534)
Q Consensus 304 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 375 (534)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 77888999999999 999999999999999875 67778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 376 FSALWS----SGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFRPTVISYNIIIL 447 (534)
Q Consensus 376 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 447 (534)
...|.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 899999999999999864 56778888999999 999999999999998864 3667788889
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCC
Q 047017 448 GFCK----TRRINESIEVLAAMFEKGC 470 (534)
Q Consensus 448 ~~~~----~g~~~~A~~~~~~~~~~~~ 470 (534)
.|.. .+++++|...++++.+.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9998 9999999999999999863
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=1.8e-15 Score=134.32 Aligned_cols=247 Identities=10% Similarity=-0.053 Sum_probs=170.8
Q ss_pred hcCChhHHHHHHHHHHHCCC---CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHH
Q 047017 49 RAGKFDESLYFIESMVANGC---KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELA 125 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 125 (534)
..|++++|+..|+++.+... +.+..++..++.++...|++++|...|+.+...+|.+..++..++.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45789999999999987632 235677888999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 126 NKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
.+.|+++.+.. +.+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+.+.
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--- 170 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH--- 170 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence 99999988763 3367788888899999999999999999988764 33333333334445556777776666554
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhCCChhH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEP---NVVTYSILISSLCRDGKTED 282 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 282 (534)
.... +++...+ .++..+...++.++|...+.......... +...+..+...+...|++++
T Consensus 171 ---------------~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 171 ---------------FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp ---------------HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 3321 2233333 35666667777777877777766542110 13556666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHH
Q 047017 283 AVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFL 322 (534)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (534)
|...++++.+.. |+. +.....++...|++++|++.+
T Consensus 234 A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777777776652 211 222344555566666665544
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.67 E-value=8.4e-15 Score=139.98 Aligned_cols=214 Identities=13% Similarity=0.090 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA-DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMIS 393 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 393 (534)
++++...++...... +.+...+..+...+...|++ ++|+..|+++.+.. |.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666655442 44677777888888888888 88888888887764 6667788888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CChH
Q 047017 394 EMLSKGIEPDEITYNSLISCLCRD---------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT--------RRIN 456 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 456 (534)
++.+. .|+...+..+..++... |++++|...+++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88875 46667777888888888 88888888888887753 33577788888888888 8899
Q ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 457 ESIEVLAAMFEKGCK--PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
+|+..|+++++..+. .+...+..++.+|...|++++|.+.|+++++.+|..+.++..++.++...+++++|...+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999886431 37888888999999999999999999999999999999999999999999999888875543
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.1e-15 Score=144.17 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=224.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT- 296 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 296 (534)
......+......+...|++++|...|+++...... + ...+..+...+...|++++|...++++... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345566777888899999999999999999887422 3 356778888999999999999999887643 111
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC--------------------HH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL-PD----IVNYNTILAAFCKNGN--------------------AD 351 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 351 (534)
.....+..+...+...|++++|...++++...... ++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12446777888899999999999999888764100 11 3477888889999999 99
Q ss_pred HHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 047017 352 QALEIFEKLSDV----G-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPD----EITYNSLISCLCRDGMVD 421 (534)
Q Consensus 352 ~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~ 421 (534)
+|...+++.... + .+....++..+...+...|++++|...++++.+... .++ ..++..+..++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998877543 1 112234678888999999999999999998875310 111 237788889999999999
Q ss_pred HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHH
Q 047017 422 EAVGLLVDMEST----RFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRA 491 (534)
Q Consensus 422 ~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~ 491 (534)
+|...+++..+. +..+ ...++..+...+...|++++|...++++++.... ++ ..++..++..+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999887643 1111 1457778899999999999999999998863111 12 557778899999999999
Q ss_pred HHHHHHHHHHHcCC------CchHHHHHHHhhcchHHHH
Q 047017 492 EAMELANALVSMHA------ISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 492 ~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 524 (534)
+|..+++++++..+ ....++..++.++...|+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999999988632 2245777788888777765
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.65 E-value=3.9e-15 Score=140.57 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCCh
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV----VMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDV 106 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 106 (534)
...+..+...+...|++++|+..|+++++.+ +.+. .++..++.++...|++++|...++++.... +...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778889999999999999998864 3343 478888899999999999999998887652 4455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHcCCC-----------------HHHHHHHH
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSR----GF-SPDVVTYNIMIGSLCSRGM-----------------IESAFKVF 164 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 164 (534)
.++..+...+...|++++|...++++.+. +- +....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 67888889999999999999998887654 11 1124567778888888888 88888888
Q ss_pred HHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047017 165 DQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTL 239 (534)
Q Consensus 165 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (534)
++..+. +. +....++..+...|...|++++|...+++. +.+.... .........+..+...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~--~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER-----------LRIAREF--GDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHH--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-----------HHHHHhc--CCcHHHHHHHHHHHHHH
Confidence 776542 11 112346677777888888888888877765 1221110 00000123566677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHhcHHHHHHHH
Q 047017 240 LNMGKWEEGEKLMTEMISRGLE-----PNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL-----TPDAYSYDPLISAY 309 (534)
Q Consensus 240 ~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 309 (534)
...|++++|...+++....... ....++..+...+...|++++|...++++.+... ......+..+..+|
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 7777777777777766543110 0133455555556666666666666655543200 00012333444444
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047017 310 CKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~ 327 (534)
...|++++|...+++..+
T Consensus 354 ~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 444555554444444443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=8.1e-15 Score=138.12 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=172.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCC
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPD 105 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 105 (534)
....+......+...|++++|+..|+++++.. +.+ ..++..++..+...|++++|...++.+.... +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44556777888899999999999999988864 333 3567788888999999999999988876542 223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCC--------------------HHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRGF-SPD----VVTYNIMIGSLCSRGM--------------------IESA 160 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 160 (534)
..++..+...+...|++++|...++++.+... .++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55778888888889999999988888765410 011 3467777788888888 8888
Q ss_pred HHHHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCC-CCHhhHHH
Q 047017 161 FKVFDQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ-PDVISYNM 234 (534)
Q Consensus 161 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 234 (534)
...+++.... +. +....++..++..|...|++++|...+++. +.+.. ..+.. ....++..
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAK---EFGDKAAERRAYSN 232 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH-----------HHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHH---hcCCcHHHHHHHHH
Confidence 8887776542 11 112345667777777778877777777664 11111 11100 01235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC----HhcHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGLT-PD----AYSYDP 304 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 304 (534)
+...+...|++++|...+++....... ++ ..++..+...+...|++++|...++++.+.... .+ ..++..
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 667777777777777777766543100 01 334555556666666666666666555432100 01 223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 047017 305 LISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
+...|...|++++|...+++..
T Consensus 313 la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
No 61
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=6.1e-16 Score=151.73 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSD---VGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.+|+.++.+|++.|+.++|..+|..|.+ .|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4566666666666666666666655432 2455566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 412 SCLCRDGM-VDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 412 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
.++++.|+ .++|.++|++|.+.|+.||..+|+.++..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 66655554 34555666666655666666655555543
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=3.6e-15 Score=140.83 Aligned_cols=280 Identities=15% Similarity=0.102 Sum_probs=212.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHC----C-CCCCH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEK----G-LTPDA 299 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 299 (534)
...+..+...+...|++++|+..|+++++.... +. ..+..+...+...|++++|...++++.+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778889999999999999999887432 33 46788889999999999999999988753 1 12234
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISD----G-CLPDIVNYNTILAAFCKNGN-----------------ADQALEIF 357 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~ 357 (534)
..+..+...|...|++++|...++++... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56778888999999999999999988764 1 11234577888889999999 99999998
Q ss_pred HHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 047017 358 EKLSDV----GC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLL 427 (534)
Q Consensus 358 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 427 (534)
++..+. +. +....++..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887543 11 122347778888999999999999999988764110 11 236778888999999999999999
Q ss_pred HHHHhCCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHH
Q 047017 428 VDMESTRFR-P----TVISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRAEAMELA 497 (534)
Q Consensus 428 ~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 497 (534)
++....... . ...++..+...+...|++++|..+++++++.... ++ ..++..++..+...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988765211 1 1456778888999999999999999998874111 11 346778889999999999999999
Q ss_pred HHHHHcCCCchH
Q 047017 498 NALVSMHAISRD 509 (534)
Q Consensus 498 ~~~~~~~~~~~~ 509 (534)
+++++.......
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999988765544
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=8.8e-14 Score=114.96 Aligned_cols=164 Identities=17% Similarity=0.159 Sum_probs=152.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+...|++++|+..|+++++.+ |.+..++..++.++...|++++|...++.+....+.+..++..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999886 67899999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...++++.|.+.+.+..... +.+...+..+..++...|++++|++.|+++.+.. |.+..++..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988763 3467889999999999999999999999999886 77888999999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
++.|+++
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=9.1e-14 Score=114.88 Aligned_cols=172 Identities=15% Similarity=0.071 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047017 333 DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLIS 412 (534)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 412 (534)
+..+|..++..|...|++++|+..|+++.+.. |.+..++..++.++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677788888888888888888888887775 6677888888888888888888888888877653 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 492 (534)
.+...++++.|...+.+..... +.+...+..+..++...|++++|++.++++++.++ .+..++..++.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887653 33567788888888999999999999999888753 367888889999999999999
Q ss_pred HHHHHHHHHHcCCCch
Q 047017 493 AMELANALVSMHAISR 508 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~ 508 (534)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999998877543
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=7.7e-13 Score=119.09 Aligned_cols=188 Identities=9% Similarity=-0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS-SYNTMFSALWSSGDKIRALGMISE 394 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 394 (534)
++|..+|++.+..-.+.+...|..++..+...|++++|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555552112234455555555555555555555555555532 22232 455555555555555566655555
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 047017 395 MLSKGIEPDEITYNSLISCLC-RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG-CKP 472 (534)
Q Consensus 395 ~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 472 (534)
+.+.. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+...|++++|..+|+++++.. ++|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 55432 222233322222211 2456666666665555431 2244555555555555666666666666665542 222
Q ss_pred --CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 473 --NETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 473 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
....|..++......|+.++|..+++++++..|.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 3445555555555556666666666666665554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=6e-14 Score=128.38 Aligned_cols=275 Identities=14% Similarity=0.109 Sum_probs=165.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCChh
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDVF 107 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 107 (534)
..+......+...|++++|+..|+++++.. +.+ ...+..++..+...|++++|...++.+.... +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345566778888999999999999988864 333 3567788888899999999999888876542 23356
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHcCCC--------------------HHHHHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGF-SPD----VVTYNIMIGSLCSRGM--------------------IESAFK 162 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~ 162 (534)
++..+...+...|++++|.+.+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888888888999998888888764310 112 3366777778888888 788887
Q ss_pred HHHHHHhC----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC-CCCHhhHHHHH
Q 047017 163 VFDQLLRD----NC-KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC-QPDVISYNMLL 236 (534)
Q Consensus 163 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~ 236 (534)
.+++.... +. +....++..+...+...|++++|...+++. ..+... .+. .....++..+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~~---~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAKE---FGDKAAERRAYSNLG 230 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHHH---HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------HHHHHh---cCChHHHHHHHHHHH
Confidence 77776532 11 112335666777777777777777777654 111111 110 01123556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHhcHHHHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEKGL-----TPDAYSYDPLI 306 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~ 306 (534)
..+...|++++|...+++....... .+ ..++..+...+...|++++|...++++.+... .....++..+.
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 6667777777777776665543100 01 23444555555555555555555555443200 00012333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047017 307 SAYCKDGRLDLAIEFLDYMIS 327 (534)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~ 327 (534)
..|...|++++|...++++.+
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 444444444444444444443
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.61 E-value=9.7e-13 Score=118.43 Aligned_cols=217 Identities=11% Similarity=0.049 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-------cCCH-------hHHHHHHHHHHH-cCCCChhhHHHHHHHHHh
Q 047017 54 DESLYFIESMVANGCKPDVVMCTKLIKKFFQ-------ERKS-------NKAVRVMEILEK-YGEPDVFAYNALISGFCK 118 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 118 (534)
++|+..|++++... +.+...|..++..+.. .|++ ++|..+|+++.. ..|.+..+|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888764 6678888888877653 4775 788888888888 467777888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hh-hHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHhHH
Q 047017 119 ANQIELANKVLDRLRSRGFSPD-VV-TYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATM-LEGQTDKA 195 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 195 (534)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+.+ +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888875 443 33 78888888888888888888888888764 444444443333322 24666666
Q ss_pred HHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHH
Q 047017 196 MKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG-LEP--NVVTYSILIS 272 (534)
Q Consensus 196 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~ 272 (534)
..+|++. .... +.+...|..++..+.+.|++++|..+|++.+... .+| ....|..++.
T Consensus 189 ~~~~~~a------------------l~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~ 249 (308)
T 2ond_A 189 FKIFELG------------------LKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 249 (308)
T ss_dssp HHHHHHH------------------HHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHH
T ss_pred HHHHHHH------------------HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 6666654 3321 2356677777777777788888888888877752 233 3456677777
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 047017 273 SLCRDGKTEDAVDVLRAAKEK 293 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~ 293 (534)
.....|+.+.|..+++++.+.
T Consensus 250 ~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 250 FESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777765
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=9.1e-15 Score=133.88 Aligned_cols=277 Identities=13% Similarity=0.075 Sum_probs=193.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCC-CCH
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLT-PDA 299 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 299 (534)
...+......+...|++++|...++++.+.... + ...+..+...+...|++++|...++++.+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344566677888999999999999998887422 3 356778888899999999999999887653 111 124
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHHH
Q 047017 300 YSYDPLISAYCKDGRLDLAIEFLDYMISDGC-LPD----IVNYNTILAAFCKNGN--------------------ADQAL 354 (534)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~ 354 (534)
..+..+...+...|++++|...++++.+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4667778888889999999998888765410 112 2367777888888888 88888
Q ss_pred HHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 047017 355 EIFEKLSDV----G-CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPD----EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 355 ~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~ 424 (534)
..+++.... + .+.....+..+...+...|++++|...++++.+... .++ ..++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876442 1 011234667777888888888888888888775310 011 236677777888888888888
Q ss_pred HHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHH
Q 047017 425 GLLVDMESTRFR-PT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCK-PN----ETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 425 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~ 494 (534)
..+++..+.... ++ ..++..+...+...|++++|...++++++.... .+ ..++..+...+...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888877643111 11 446667778888888888888888887763111 11 345667788888888888888
Q ss_pred HHHHHHHHcCCC
Q 047017 495 ELANALVSMHAI 506 (534)
Q Consensus 495 ~~~~~~~~~~~~ 506 (534)
.+++++++..+.
T Consensus 324 ~~~~~a~~~~~~ 335 (338)
T 3ro2_A 324 HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=5.7e-14 Score=134.24 Aligned_cols=213 Identities=9% Similarity=-0.035 Sum_probs=175.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS-NKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDR 131 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 131 (534)
+++++..++...... +.+...+..++.++...|++ ++|+..|+++.+.+|.+..+|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666777665543 56788999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHcC---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--------CCHhH
Q 047017 132 LRSRGFSPDVVTYNIMIGSLCSR---------GMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE--------GQTDK 194 (534)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~ 194 (534)
+.+. .|+...+..+..++... |++++|...|+++.+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9987 57788889999999999 99999999999999876 66788999999998887 77777
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQ--PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILIS 272 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 272 (534)
|+..|+++ ...... .+...|..+..++...|++++|+..|++..+... .+...+..+..
T Consensus 240 A~~~~~~a------------------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~ 300 (474)
T 4abn_A 240 ALSAYAQA------------------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHH------------------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 77777665 443210 3677888888888888888888888888887642 25566777777
Q ss_pred HHHhCCChhHHHHHHH
Q 047017 273 SLCRDGKTEDAVDVLR 288 (534)
Q Consensus 273 ~~~~~~~~~~a~~~~~ 288 (534)
++...|++++|+..+.
T Consensus 301 ~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 301 LLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777787777776553
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=2.3e-13 Score=126.95 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=132.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHH
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRD----NCKP-TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~ 221 (534)
....+...|++++|...|++..+. +-++ ...++..++.+|...|++++|...+.+. +.++..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a-----------l~~~~~-- 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA-----------YEIYKE-- 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHT--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHh--
Confidence 556677788888888888888754 1111 3357788888888899999888888765 222211
Q ss_pred HcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhCCChhHHHHHHHHHHHC-
Q 047017 222 SRGC--QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLE-PN----VVTYSILISSLCRDGKTEDAVDVLRAAKEK- 293 (534)
Q Consensus 222 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 293 (534)
.+. +....+++.+..++...|++++|+..+++....... ++ ..++..+..+|...|++++|...++++.+.
T Consensus 176 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 176 -HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp -CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 110 112346777888888889999998888887654111 11 235666677777777777777777766651
Q ss_pred ---CC-CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhh
Q 047017 294 ---GL-TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG----CLPDIVNYNTILAAFCKNGN---ADQALEIFEKLSD 362 (534)
Q Consensus 294 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~ 362 (534)
+. +....++..++..+...|++++|...+++..... .+.....+..+...+...|+ .++|+.++++...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~ 334 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML 334 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC
Confidence 11 2233455666666666666666666666655421 01111123334444445555 4444444443311
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 363 VGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
.+.....+..+...|...|++++|...+++..
T Consensus 335 --~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 335 --YADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01122233444444555555555555544443
No 71
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=146.80 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=124.3
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMIS---DGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
...+|+.++.+|++.|++++|..+|+.|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 446899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHH
Q 047017 375 MFSALWSSGD-KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT------VISYNIIIL 447 (534)
Q Consensus 375 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 447 (534)
++.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++.++++ ..+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999997 478999999999999999999999998765553 344444444 2234443 334444555
Q ss_pred HHHhcC
Q 047017 448 GFCKTR 453 (534)
Q Consensus 448 ~~~~~g 453 (534)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=2.6e-13 Score=126.60 Aligned_cols=232 Identities=9% Similarity=-0.045 Sum_probs=175.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEK----GLTP-DAYSYDPLISAYCKDGRLDLAIEFLDYMISDG--C----LPDIVNYN 338 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 338 (534)
....+...|++++|...++++.+. +..+ ...++..++..|...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998864 1111 23567888899999999999999998887631 1 11235778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 047017 339 TILAAFCKNGNADQALEIFEKLSDVGC-PPN----VSSYNTMFSALWSSGDKIRALGMISEMLSK----GI-EPDEITYN 408 (534)
Q Consensus 339 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 408 (534)
.++..|...|++++|+..++++.+... .++ ..++..++.+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998865410 011 247788999999999999999999988862 22 33467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMEST----RFRPTVISYNIIILGFCKTRR---INESIEVLAAMFEKGCKP-NETTYVLL 480 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 480 (534)
.+..++...|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999887653 111122335667888888888 77777777766 2222 34566788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC
Q 047017 481 IEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 481 ~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+..|...|++++|..+++++++..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=7.8e-14 Score=126.11 Aligned_cols=167 Identities=13% Similarity=0.089 Sum_probs=138.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVAN-------GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG------ 102 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 102 (534)
....+..+...+...|++++|+.+|+++.+. ..+....++..++..+...|++++|...++.+....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566888999999999999999999998873 234556778899999999999999999999988752
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC---
Q 047017 103 --EPDVFAYNALISGFCKANQIELANKVLDRLRSR------GFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--- 170 (534)
Q Consensus 103 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 170 (534)
+....++..++..+...|++++|.+.++++.+. +..| ....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999998764 2122 3566788899999999999999999998865
Q ss_pred ---C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 171 ---N-CKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 171 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+ .+....++..++.+|...|++++|...++++
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1334457888999999999999999999876
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.52 E-value=2.3e-12 Score=110.52 Aligned_cols=211 Identities=10% Similarity=-0.005 Sum_probs=169.0
Q ss_pred CCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 047017 297 PDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMF 376 (534)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 376 (534)
.++..+...+..+...|++++|...|+++++...+++...+..++.++...|++++|+..+++..+.. |.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999987633677888889999999999999999999999875 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDE-------ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNIII 446 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 446 (534)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998853 3344 45778888899999999999999999875 444 46677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 447 LGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
.++...| ..+++++...+. .+...+.... ....+.+++|+..++++++..|.++.+...+..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7776544 455666666542 2444444433 334567999999999999999999998888876654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=124.74 Aligned_cols=248 Identities=16% Similarity=0.055 Sum_probs=118.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CC
Q 047017 229 VISYNMLLRTLLNMGKWEEGEKLMTEMISR-------GLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEK------GL 295 (534)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 295 (534)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666667777777666666552 11222344555555566666666666666555432 10
Q ss_pred -CCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHH
Q 047017 296 -TPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNT 374 (534)
Q Consensus 296 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 374 (534)
+.....+..+...+...|++++|...++++.+... .......+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHHH
Confidence 11122334444444444455544444444433200 0000000112234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-h
Q 047017 375 MFSALWSSGDKIRALGMISEMLSK------GIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMEST-------RFRPT-V 439 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~ 439 (534)
+...+...|++++|...++++.+. +..| ...++..+..++...|++++|...++++.+. ...+. .
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555555555555555555555432 1111 2234555566666666666666666655431 01111 1
Q ss_pred hh------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 440 IS------YNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 440 ~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.. +..+...+...+.+.++...++...... +....++..++.+|...|++++|.++++++++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11 1122222334455555666666665432 22456777888888899999999999988887654
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=5.5e-13 Score=132.37 Aligned_cols=172 Identities=16% Similarity=0.062 Sum_probs=143.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSL 410 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 410 (534)
+.+..+++.+...|.+.|++++|+..|+++.+.. |.+..++..+..+|.+.|++++|+..|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456788889999999999999999999998875 6778889999999999999999999999888753 3357788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 047017 411 ISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWR 490 (534)
Q Consensus 411 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 490 (534)
..++...|++++|.+.|++..+.. +.+...|..+..+|...|++++|++.|+++++..+. +...+..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999888753 235778888999999999999999999999887533 678888899999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 047017 491 AEAMELANALVSMHAI 506 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~ 506 (534)
++|.+.++++++..+.
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999988886543
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=3.8e-11 Score=111.48 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=149.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH----hcHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEMISRGLEPNVV----TYSILISSLCRDGKTEDAVDVLRAAKEKGL-TPDA----YSYDPL 305 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l 305 (534)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+. ..+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777777777777766653221211 344555666667777777777766654210 0111 123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC----CCHhhHHH
Q 047017 306 ISAYCKDGRLDLAIEFLDYMISD----GCL--P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCP----PNVSSYNT 374 (534)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 374 (534)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66667777777777777666542 111 1 2234555666677777777777777766543211 11234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHH
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEP--DEITYN----SLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNII 445 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 445 (534)
+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 6666777777777777777665421111 111111 222335567777777777776654322111 1234556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEK----GCKPNE-TTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
...+...|++++|...++++... +..++. ..+..+..++...|+.++|...+++++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 66677777777777777766542 111111 24455666677777777777777776654
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=3.5e-12 Score=105.36 Aligned_cols=163 Identities=12% Similarity=0.107 Sum_probs=147.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+.+..+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567788899999999999999999988764 567888999999999999999999999999999888999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998763 4467888899999999999999999999999875 667889999999999999999999
Q ss_pred HHHHHh
Q 047017 197 KLLDEM 202 (534)
Q Consensus 197 ~~~~~~ 202 (534)
..++.+
T Consensus 165 ~~~~~~ 170 (186)
T 3as5_A 165 PHFKKA 170 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998876
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=2.1e-12 Score=128.21 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+.+.|++++|+..|+++++.. +.+..++..++.++.+.|++++|+..|+++.+.+|.+..+|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999875 66789999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|+++++.. +.+...+..++.++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999873 3368899999999999999999999999999886 66788999999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
.+.++++
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=5e-12 Score=104.39 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047017 335 VNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCL 414 (534)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 414 (534)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777778888888888888877654 5567778888888888888888888888887652 34567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 415 CRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++.. +.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887653 3466778888888889999999999999888875 336778888888999999999999
Q ss_pred HHHHHHHHcCCCch
Q 047017 495 ELANALVSMHAISR 508 (534)
Q Consensus 495 ~~~~~~~~~~~~~~ 508 (534)
.+++++++..|.++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999988776655
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.47 E-value=3.8e-11 Score=111.47 Aligned_cols=272 Identities=13% Similarity=0.046 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCh----hhH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVV----MCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDV----FAY 109 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~ 109 (534)
.......+...|++++|...+++++......+.. ++..+...+...|++++|...++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566778999999999999998865322322 46677788899999999999999987654 2222 336
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC----CCHhh
Q 047017 110 NALISGFCKANQIELANKVLDRLRSR----GFS--P-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCK----PTVIT 178 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~ 178 (534)
..+...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67888899999999999999987653 221 2 2345667888999999999999999998765321 12356
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHhcCCHHHHHHHHHH
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYN----MLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~ 254 (534)
+..+...+...|++++|...+++.. .+. ...+. + ..... ..+..+...|++++|...++.
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~-----------~~~---~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLE-----------NLL---GNGKY-H-SDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-----------HHH---TTSCC-C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----------HHH---hccCc-c-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 7788888999999999999888751 000 01111 1 11111 233446788999999998888
Q ss_pred HHHCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCH-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 255 MISRGLEPN---VVTYSILISSLCRDGKTEDAVDVLRAAKEK----GLTPDA-YSYDPLISAYCKDGRLDLAIEFLDYMI 326 (534)
Q Consensus 255 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (534)
.......+. ...+..+...+...|++++|...++.+... +..++. ..+..+..++...|+.++|...+++..
T Consensus 241 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 765432111 123455666777777777777777766542 111111 134444555566666666666666554
Q ss_pred H
Q 047017 327 S 327 (534)
Q Consensus 327 ~ 327 (534)
.
T Consensus 321 ~ 321 (373)
T 1hz4_A 321 K 321 (373)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=5.1e-12 Score=117.50 Aligned_cols=158 Identities=10% Similarity=0.013 Sum_probs=67.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CC----CCHhhHHHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGC-LP----DIVNYNTILAAFCKNGNADQALEIFEKLSDVG--CP----PNVSSYNTMFS 377 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~~l~~ 377 (534)
+...|++++|...++++.+... .+ ...++..++..|...|+++.|+..++++.+.. .+ ....++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3444555555555554443200 01 12234444445555555555555554443220 00 01223444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHHHHHH
Q 047017 378 ALWSSGDKIRALGMISEMLSK----GIE-PDEITYNSLISCLCRDGMVDEAVGLLVDMES-----TRFRPTVISYNIIIL 447 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~ 447 (534)
+|...|++++|...+.+..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++..++.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHH
Confidence 555555555555555444431 000 0112344444455555555555555544443 21 111334444455
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~ 467 (534)
++...|++++|...++++++
T Consensus 270 ~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=2.2e-11 Score=113.21 Aligned_cols=234 Identities=12% Similarity=0.022 Sum_probs=132.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRDNC-KP----TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
.....+...|++++|...|+++.+... .+ ...++..++.+|...|+++.|...+.+. +.++.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a-----------l~~~~-- 172 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA-----------LDIYQ-- 172 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-----------HHHHH--
Confidence 445566788888888888888875411 11 2356778888899999999998888765 22221
Q ss_pred HHcCC-C-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CChhhHHHHHHHHHhCCChhHHHHHHHHHHH-
Q 047017 221 ESRGC-Q-PDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG----LE-PNVVTYSILISSLCRDGKTEDAVDVLRAAKE- 292 (534)
Q Consensus 221 ~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 292 (534)
..+. . ....+++.+..++...|++++|...+++..... .. ....++..+..+|...|++++|...+++..+
T Consensus 173 -~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 173 -NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp -TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1110 1 124567788888888999999988888776531 11 1123455666667777777777777766655
Q ss_pred ----CCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHh
Q 047017 293 ----KGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGC----LPDIVNYNTILAAFCKNGN---ADQALEIFEKLS 361 (534)
Q Consensus 293 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 361 (534)
.. +....++..++.++...|++++|...+++..+... +.....+..+...+...++ ..+|+..+++..
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~ 330 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN 330 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC
Confidence 22 11244555566666666666666666666554311 1112233334444444444 444444444321
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 362 DVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
. .+.....+..++..|...|++++|...++++.
T Consensus 331 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 L--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 01122233444455555555555555554443
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=9.7e-12 Score=109.05 Aligned_cols=213 Identities=13% Similarity=0.071 Sum_probs=131.9
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHhhH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPD---IVNYNTILAAFCKNGNADQALEIFEKLSDVGC--PPNVSSY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 372 (534)
+...+..++..+...|++++|...|+.+++.. +.+ ...+..++.+|...|++++|+..|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455555566666666666666666666542 222 44555566666666666666666666655420 1113344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047017 373 NTMFSALWS--------SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYN 443 (534)
Q Consensus 373 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 443 (534)
..+..++.. .|++++|+..|+++.+. .|+ ......+...... ...+ ...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~-------~~~~-----------~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIREL-------RAKL-----------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH-------HHHH-----------HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHH-------HHHH-----------HHHHH
Confidence 455555555 56666666666665553 122 1111111100000 0000 01135
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCch---
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYG----------GWRAEAMELANALVSMHAISR--- 508 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--- 508 (534)
.+..+|...|++++|+..++++++..+.. ....+..++.++... |++++|...++++++..|.++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 67888999999999999999999864332 345777888888866 899999999999999999886
Q ss_pred HHHHHHHhhcchHHHHHHhhhhh
Q 047017 509 DTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 509 ~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+...+..++...+++++...+.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHh
Confidence 56777888888899988877654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=6.3e-12 Score=107.74 Aligned_cols=191 Identities=8% Similarity=-0.049 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047017 332 PDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLI 411 (534)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 411 (534)
.++..+...+..+...|++++|+..|+++.+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35567777777777888888888888877776522666666667777777888888888887777652 22456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 047017 412 SCLCRDGMVDEAVGLLVDMESTRFRPTV-------ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN---ETTYVLLI 481 (534)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 481 (534)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..++++++. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 77777788888888877777642 2233 34666667777777777777777777765 233 45555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhhhhcc
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k 533 (534)
.++... +...++++....+..+..+... .....+.|++|...++|
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGE 205 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 665433 3344556666655554443322 23345666777766543
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=2.4e-11 Score=108.27 Aligned_cols=211 Identities=11% Similarity=0.020 Sum_probs=133.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---CC--CHhhHHHHHH
Q 047017 308 AYCKDGRLDLAIEFLDYMISD----GCLPD-IVNYNTILAAFCKNGNADQALEIFEKLSDVGC---PP--NVSSYNTMFS 377 (534)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 377 (534)
.|...|++++|...|.+.... +.+++ ..++..+..+|...|++++|+..|++..+... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555554432 11111 34556666666666666666666666544310 00 1345677777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHH
Q 047017 378 ALWSS-GDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVI------SYNII 445 (534)
Q Consensus 378 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l 445 (534)
+|... |++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+........ .|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888887753100 01 3467788888889999999999999888764332221 46677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 446 ILGFCKTRRINESIEVLAAMFEKGCKP-N---ETTYVLLIEGIG--YGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 446 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
..++...|++++|...+++.++..+.. + ...+..++.++. ..+++++|+..|+++...+|.....+.++.+.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 788888999999999999887642211 1 113444556664 567899999999888888777766666665544
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.38 E-value=3.4e-10 Score=98.44 Aligned_cols=252 Identities=12% Similarity=0.025 Sum_probs=173.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
+-..-.|++..++.-.. +.+.........-+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 34455788888887332 222121223334455778788877642 112233333333333 33322
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGC-PPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+...++++...+ .++...+..++.++...|++++|++++.+....+. ..+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677888777654 45666667888999999999999999999877652 246778888899999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 396 LSKGIEP-----DEITYNSLISC--LCRDG--MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 396 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 874 56 34555566655 33334 899999999998765 3442333344448889999999999999776
Q ss_pred HcC-----C----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 467 EKG-----C----KPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 467 ~~~-----~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
+.. . +.++.++..++......|+ +|.++++++.+..|.+|.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 531 0 2366777677777777887 899999999999999985544
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=2.2e-11 Score=108.57 Aligned_cols=230 Identities=12% Similarity=0.006 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISAYCKD--G-RLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFE 358 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 358 (534)
+|.+++.+..+. .+++...+ . +.+. + ++++|...+.++ +..|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 567777777765 22222222 2 2233 2 488888888776 446778999999999999
Q ss_pred HHhhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHH
Q 047017 359 KLSDV----GCPPN-VSSYNTMFSALWSSGDKIRALGMISEMLSKGI---EP--DEITYNSLISCLCRD-GMVDEAVGLL 427 (534)
Q Consensus 359 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~ 427 (534)
++.+. +-+++ ..++..+..+|...|++++|+..+++..+... .+ ...++..+..+|... |++++|...+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 88654 21111 46888999999999999999999998875310 11 135788899999996 9999999999
Q ss_pred HHHHhCCCCC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHH
Q 047017 428 VDMESTRFRP-T----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNE------TTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 428 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
++..+..... + ..++..+...+...|++++|+..++++++..+.... ..+..++.++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987641111 1 356888999999999999999999999986543322 2567788899999999999999
Q ss_pred HHHHHHcCCCchHH-----HHHHHhhcc--hHHHHHHhhhhhc
Q 047017 497 ANALVSMHAISRDT-----FKRLNRTFP--LLDVYKEISHLAT 532 (534)
Q Consensus 497 ~~~~~~~~~~~~~~-----~~~l~~~~~--~~~~~~~~~~~~~ 532 (534)
+++.++..|..... +..++..+. ..++|+++...+.
T Consensus 222 ~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 222 LQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 99999988875542 444555554 4567888877664
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.35 E-value=1.5e-11 Score=109.26 Aligned_cols=155 Identities=13% Similarity=0.039 Sum_probs=124.3
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--------CCChhhHHHH
Q 047017 48 FRAGKFDESLYFIESMVAN-------GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG--------EPDVFAYNAL 112 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l 112 (534)
...|++++|+.+|+++++. +.+....++..++..+...|++++|...++.+.... +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 223456788999999999999999999999988662 4456789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHhh
Q 047017 113 ISGFCKANQIELANKVLDRLRSR------GF-SPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD------N-CKPTVIT 178 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 178 (534)
+.++...|++++|.+.++++... .. +....++..+..+|...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998765 11 223667888999999999999999999998875 1 1334567
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+..++.+|...|++++|...++++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999876
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=3.2e-11 Score=120.58 Aligned_cols=171 Identities=11% Similarity=-0.074 Sum_probs=111.0
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047017 345 CKNGNADQALEIFEKLS--------DVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR 416 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 416 (534)
...|++++|++.++++. +.. |.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45666777777777666 332 4555666666667777777777777777666542 3345666666666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 047017 417 DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 496 (534)
.|++++|...|+++.+.. +.+...+..+..++...|++++ +..|+++++.++. +...+..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766542 2245566666667777777777 7777777665432 556666677777777777777777
Q ss_pred HHHHHHcCCCchHHHHHHHhhcch
Q 047017 497 ANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 497 ~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
|+++++.+|....++..++.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 777777777777777777766644
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=2.3e-11 Score=107.98 Aligned_cols=229 Identities=15% Similarity=0.051 Sum_probs=159.4
Q ss_pred HHhCCChhHHHHHHHHHHHC-------CCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 047017 274 LCRDGKTEDAVDVLRAAKEK-------GLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISD------GC-LPDIVNYNT 339 (534)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 339 (534)
....|++++|+..+++..+. ..+....++..+...|...|++++|...++++.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34678888888888877652 21224567788899999999999999999998764 21 223567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVG-------CPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK------GIEP-DEI 405 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 405 (534)
++..|...|++++|...++++.+.. .+....++..+...+...|++++|...++++.+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987641 1334567888899999999999999999998864 1122 346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-ChhhHHHHHHHHHhcCChHHHHH------HHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST-------RFRP-TVISYNIIILGFCKTRRINESIE------VLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~ 471 (534)
++..+..++...|++++|...++++.+. ...+ ....|..+...+...+....+.. .++.... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7888899999999999999999988653 1122 23344444444444333332222 2221111 111
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 047017 472 PNETTYVLLIEGIGYGGWRAEAMELANALVSM 503 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 503 (534)
....++..++..|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23456778899999999999999999998864
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.31 E-value=5.6e-09 Score=99.58 Aligned_cols=374 Identities=11% Similarity=-0.024 Sum_probs=164.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC-HHHHHHHHHH
Q 047017 53 FDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ-IELANKVLDR 131 (534)
Q Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~ 131 (534)
++.|+.+|+.++.. -|. |+++.+..+|+..... .|+...|...+....+.++ .+....+|+.
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 56666666666543 122 5667777777776664 3466666666666665553 3445556665
Q ss_pred HHhC-CCC-CChhhHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhccc
Q 047017 132 LRSR-GFS-PDVVTYNIMIGSLCS----RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMC 205 (534)
Q Consensus 132 ~~~~-~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 205 (534)
+... |.. .+...|...+..+.. .++.+.+..+|++++......-...|...... ........+.+++...
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~--- 149 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT--- 149 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH---
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH---
Confidence 5543 322 245566666554432 34566677777777653211111122222111 1111222233322221
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG--K-----WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG 278 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (534)
.+.+..|..++..+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+...|
T Consensus 150 -~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 150 -LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 1122222322222221100012234444333322211 0 234566777766643 334666777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHh
Q 047017 279 KTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDG---------C---LPDIVNYNTILAAFCK 346 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~ 346 (534)
+.+.|..+++++... +.+...+. .|....+.++. ++.+.+.- . ......|...+....+
T Consensus 228 ~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 777777777777776 22222111 12221111111 12211110 0 0011234444444444
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047017 347 NGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG-DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVG 425 (534)
Q Consensus 347 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 425 (534)
.++.+.|..+|+.+ ... +.+...|...+..-...+ +.+.|..+|+...+.. +.+...+..++......|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666555 211 122233322222222222 4555555555555431 1123333444444455555555555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 426 LLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555541 123444444444444555555555555544
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.31 E-value=7.9e-09 Score=98.54 Aligned_cols=379 Identities=8% Similarity=-0.039 Sum_probs=238.7
Q ss_pred hcC-CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHH
Q 047017 84 QER-KSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM-IESAF 161 (534)
Q Consensus 84 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 161 (534)
+.| +++.|+.+|+.+...-|. |+++.+..+|++.+.. .|+...|...+....+.++ .+...
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 446 478888888888765433 8899999999999986 6799999998888777664 46677
Q ss_pred HHHHHHHhC-CC-CCCHhhHHHHHHHHH----hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHH
Q 047017 162 KVFDQLLRD-NC-KPTVITYTILIQATM----LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNML 235 (534)
Q Consensus 162 ~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 235 (534)
.+|+.++.. |. +.+...|...+..+. ..|+.+.+..+|+++......+.+.-+..+..+... .+..+...+
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~---~~~~~~~~~ 145 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE---LNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH---HCHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH---hccccHHHH
Confidence 888887764 32 446677777776643 245677888888887444444455555555444432 122222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCC--C-----hhHHHHHHHHHHHCCCCCCHhcHHHHHHH
Q 047017 236 LRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDG--K-----TEDAVDVLRAAKEKGLTPDAYSYDPLISA 308 (534)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (534)
+... .+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|+++.... +.++..|...+..
T Consensus 146 ~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 146 VGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEY 222 (493)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHH
T ss_pred HHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 2221 2344555555555443210113345555555432211 1 345678898888753 4467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC---C------C---CCCHhhHHHHH
Q 047017 309 YCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDV---G------C---PPNVSSYNTMF 376 (534)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~------~---~~~~~~~~~l~ 376 (534)
+.+.|+.+.|..+++++... |.+...+.. |....+.++. ++.+... . . +.....|...+
T Consensus 223 ~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 88999999999999999987 444433332 2221111221 2222211 0 0 11124566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 047017 377 SALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCR-DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI 455 (534)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 455 (534)
....+.++.+.|..+|..+ .. ...+...|...+..-.. .++.+.|..+|+...+.- +.+...|...++.....|+.
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 7777788899999999998 32 22344555433333223 336999999999988752 22455666777777889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 502 (534)
+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999972 2567788888777778999999999988886
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.31 E-value=1.3e-10 Score=97.68 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHH----------------HHHHHHhcCCHhHHHHHHHHHHHc
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTK----------------LIKKFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 101 (534)
..+......+...|++++|+..|+++++.. |.+...+.. ++.++...|++++|+..|+.+.+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445566778889999999999999999875 456777888 999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHhCCCCCCHhhH
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM--IESAFKVFDQLLRDNCKPTVITY 179 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~ 179 (534)
+|.+..++..+..++...|++++|.+.|+++.+.. +.+..+|..+..+|...|+ ...+...+..+.. ..|....+
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 99999999999999999999999999999999873 3367888888888866654 3455666666542 23333445
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHh
Q 047017 180 TILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+..++...|++++|+..|+++
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 55666777788888888888876
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=2.1e-10 Score=100.53 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=118.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC---ChhhH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP---DVFAY 109 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 109 (534)
+...+..+...+.+.|++++|+..|+++++.. |.+ ..++..++.++...|++++|+..|+.+....|. ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566677777777777777777777777653 333 566777777777777777777777777776532 24556
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 110 NALISGFCK--------ANQIELANKVLDRLRSRGFSPDV-VTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 110 ~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
..+..++.. .|++++|...|+++.+. .|+. .....+.. +..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 667777777 77777777777777665 3332 22211111 1111000 011245
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhc----------CCHHHH
Q 047017 181 ILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNM----------GKWEEG 248 (534)
Q Consensus 181 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a 248 (534)
.++.+|...|++++|+..|+++ ....... ....+..+..++... |++++|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAV------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 6777888888888888888776 4332111 245677777788766 888999
Q ss_pred HHHHHHHHHC
Q 047017 249 EKLMTEMISR 258 (534)
Q Consensus 249 ~~~~~~~~~~ 258 (534)
...|+.+++.
T Consensus 215 ~~~~~~~~~~ 224 (261)
T 3qky_A 215 VELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988876
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=1.7e-10 Score=96.91 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=116.6
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA----------------LISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
+...+...+..+...|++++|+..|+.+...+|.+..++.. +..++.+.|++++|...|++..+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777889999999999999999988878888877 78888888888888888888777
Q ss_pred CCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHhcccccCChHH
Q 047017 135 RGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTD--KAMKLLDEMGMCKKGMVGQ 212 (534)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~ 212 (534)
.. +.+...+..+..++...|++++|...|+++++.. |.+..++..++.+|...|+.+ .+...+..+
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~---------- 150 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL---------- 150 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------
Confidence 63 3356777788888888888888888888887765 566777777777765554322 223333222
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047017 213 AFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV 265 (534)
Q Consensus 213 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 265 (534)
. ...|....+.....++...|++++|+..|++.++. .|+..
T Consensus 151 --------~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 151 --------S--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred --------h--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 1 11222223344455566667777777777777765 44543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.28 E-value=1.7e-11 Score=96.80 Aligned_cols=146 Identities=11% Similarity=0.045 Sum_probs=121.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
|...+...|++++|+..++.+.... +.+...+..++..|...|++++|+..|+++.+.+|.+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3445567789999999999987653 445667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKV-FDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++|...|++..+.. +-+...|..+..+|.+.|++++|.+. ++++.+.. |.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999999999873 33678899999999999999876665 58888775 6677888888877777664
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=4.8e-10 Score=97.49 Aligned_cols=237 Identities=11% Similarity=-0.039 Sum_probs=166.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 047017 271 ISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNA 350 (534)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (534)
++-..-.|.+..++.-.. +............+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 344556899988887333 222222333444556888888887642 11234444555444443 322
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 351 DQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGI-EPDEITYNSLISCLCRDGMVDEAVGLLVD 429 (534)
Q Consensus 351 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 429 (534)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 788888887765 56666777889999999999999999999877643 23667888889999999999999999999
Q ss_pred HHhCCCCC-----ChhhHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 430 MESTRFRP-----TVISYNIIILG--FCKTR--RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 430 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 55 34555566655 33344 899999999999765 355333344445899999999999999988
Q ss_pred HHc----------CCCchHHHHHHHhhcchHHHHHHhhhhh
Q 047017 501 VSM----------HAISRDTFKRLNRTFPLLDVYKEISHLA 531 (534)
Q Consensus 501 ~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 531 (534)
.+. +|.+++++..++.+....|+ ++.+++
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 776 47889999777767666665 555544
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=8.1e-09 Score=90.89 Aligned_cols=231 Identities=9% Similarity=0.038 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 40 FMKLIKRSFRAGKF-DESLYFIESMVANGCKPDVVMCTKLIKKFFQER--KSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 40 ~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
....+++..+.|.+ ++|+.+++.++..+ |.+..+|+.-..++...| ++++++..++.+...+|.+..+|+.-..++
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 34455556667766 58999999999876 667889999999999999 999999999999999999999998877777
Q ss_pred ----Hhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 047017 117 ----CKA---NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE--SAFKVFDQLLRDNCKPTVITYTILIQATM 187 (534)
Q Consensus 117 ----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (534)
... +++++++++++++.+.. +.+..+|+.-..++.+.|.++ ++++.++++++.+ +.|...|+.-..+..
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555 78999999999999874 447888888888888888888 9999999999886 677778877666655
Q ss_pred hcCC------HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-
Q 047017 188 LEGQ------TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEE-GEKLMTEMISRG- 259 (534)
Q Consensus 188 ~~g~------~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~- 259 (534)
..|. ++++++.+ +.+.... +-|...|+.+...+.+.|+... +..+..++...+
T Consensus 192 ~l~~~~~~~~~~eEl~~~------------------~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 252 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYV------------------KDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK 252 (306)
T ss_dssp SSGGGCCHHHHHHHHHHH------------------HHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG
T ss_pred hccccchhhhHHHHHHHH------------------HHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC
Confidence 5443 33333333 2223332 2355555555555555554222 233333333221
Q ss_pred -CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 260 -LEPNVVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 260 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
-..+...+..++..+.+.|+.++|.++++.+.+
T Consensus 253 ~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 253 DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 012334444444555555555555555555443
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.26 E-value=4.7e-10 Score=86.86 Aligned_cols=130 Identities=10% Similarity=0.177 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
.|..+...+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++.+....+.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56777888888899999999999888764 55677888888888888999999999998888878788888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 119 ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.|++++|.+.++++.... +.+...+..++.++...|++++|...++++...
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999888887763 335677788888888889999998888888765
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.25 E-value=7.4e-09 Score=91.12 Aligned_cols=234 Identities=10% Similarity=0.015 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhC---CCHH
Q 047017 281 EDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDG--RLDLAIEFLDYMISDGCLPDIVNYNTILAAF----CKN---GNAD 351 (534)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 351 (534)
++|+.+++.++..+. -+...++.-..++...+ ++++++.+++.++..+ +.+..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 467777777666532 24445555556666666 7777777777777654 33455555544444 444 6677
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 047017 352 QALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKI--RALGMISEMLSKGIEPDEITYNSLISCLCRDGM------VDEA 423 (534)
Q Consensus 352 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 423 (534)
+++.+++.+.+.. |.+..+|..-.-.+...+.++ ++++.++++.+.+ +-+...|+.........|. ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7778887777764 667777777777777777777 7788888877754 2356666666666666665 7888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 424 VGLLVDMESTRFRPTVISYNIIILGFCKTRRINE-SIEVLAAMFEKG--CKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
++.+++++... +-|...|+.+...+...|+..+ +..+..++.+.+ -..+...+..++.++.+.|+.++|.++++.+
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888887764 3377788888878877777444 455666666543 1236778888899999999999999999999
Q ss_pred HH-cCCCchHHHHHHHhhcc
Q 047017 501 VS-MHAISRDTFKRLNRTFP 519 (534)
Q Consensus 501 ~~-~~~~~~~~~~~l~~~~~ 519 (534)
.+ .+|.....|...++.+.
T Consensus 285 ~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 285 KSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp HHTTCGGGHHHHHHHHHTCC
T ss_pred HhccChHHHHHHHHHHhhcc
Confidence 97 69988888887766543
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.25 E-value=1e-11 Score=98.11 Aligned_cols=144 Identities=9% Similarity=-0.012 Sum_probs=108.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 375 MFSALWSSGDKIRALGMISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
|...+...|++++|+..+...... .| +...+..+..+|...|++++|.+.|++.++.. +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344455667788888888877653 23 34456677888888899999999988888763 336778888888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 454 RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAME-LANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
++++|+..|+++++.++. +..++..++..+.+.|++++|.+ +++++++.+|.++.++...++++...|
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 999999999999887533 67888888888988888877655 468999999999988888777766544
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=1.9e-10 Score=114.99 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=147.4
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 48 FRAGKFDESLYFIESMV--------ANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 48 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
...|++++|++.+++++ +.. +.+...+..++.++...|++++|+..|+.+.+.+|.+..+|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78999999999999998 543 567888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLL 199 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 199 (534)
|++++|.+.|+++.+.. +.+...|..+..++...|++++ .+.|+++++.+ +.+...+..+..++...|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999873 3367888999999999999999 99999999886 678889999999999999999999999
Q ss_pred HHhcccccCChHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCC
Q 047017 200 DEMGMCKKGMVGQAFQFVRSLESRGCQPD-VISYNMLLRTLLNMGK 244 (534)
Q Consensus 200 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 244 (534)
+++ .+ ..|+ ...+..+..++...++
T Consensus 558 ~~a------------------l~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEV------------------PP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTS------------------CT--TSTTHHHHHHHHHHHTC----
T ss_pred Hhh------------------cc--cCcccHHHHHHHHHHHHccCC
Confidence 987 22 2343 4566666666655444
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=9.4e-10 Score=93.74 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=131.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh---hHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF---AYN 110 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 110 (534)
++..+..+...+...|++++|+..|+++++..+.. ...++..++.++...|++++|+..|+.+.+..|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45677788889999999999999999999864221 2467889999999999999999999999998866654 566
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCh-hhH-----------------HHHHHHHHcC
Q 047017 111 ALISGFCK------------------ANQIELANKVLDRLRSRGFSPDV-VTY-----------------NIMIGSLCSR 154 (534)
Q Consensus 111 ~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~ 154 (534)
.+..++.. .|++++|...|+++.+. .|+. ..+ ..+...|.+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666654 57899999999999987 4443 222 2456678899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 155 GMIESAFKVFDQLLRDNCKPTV---ITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 155 g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
|++++|...|+++++.. |.+. ..+..++.+|.+.|++++|.+.++.+
T Consensus 161 ~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999999999874 3333 56888999999999999999988876
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.21 E-value=1e-09 Score=84.88 Aligned_cols=128 Identities=11% Similarity=0.139 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
.++..++..+...|++++|..+++.+....+.+..++..++..+...|++++|...++++...+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3577888999999999999999999999888889999999999999999999999999998764 346778889999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..|++++|.+.++++.... +.+..++..++.++...|++++|...++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 9999999999999998875 567788899999999999999999988876
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.21 E-value=1.8e-10 Score=94.00 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH-H
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG-F 116 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (534)
..+......+...|++++|+..|+++++.. |.+..++..++.++...|++++|+..++.+....| ++..+...... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 356778889999999999999999987764 66789999999999999999999999999988777 76555443323 2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKP-TVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 195 (534)
...++...|...+++..+.. +.+...+..+..++...|++++|...|+++++....+ +...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23333445788899988762 3358889999999999999999999999999875322 356888999999999999999
Q ss_pred HHHHHHh
Q 047017 196 MKLLDEM 202 (534)
Q Consensus 196 ~~~~~~~ 202 (534)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988865
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.20 E-value=3e-09 Score=89.47 Aligned_cols=176 Identities=13% Similarity=0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHH
Q 047017 318 AIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSG----DKIRALGMIS 393 (534)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 393 (534)
|+..|++..+.+ ++..+..+...|...+++++|+.+|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555555555556666666665555543 44455555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHH
Q 047017 394 EMLSKGIEPDEITYNSLISCLCR----DGMVDEAVGLLVDMESTRFR-PTVISYNIIILGFCK----TRRINESIEVLAA 464 (534)
Q Consensus 394 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 464 (534)
+..+.+ +...+..+...|.. .+++++|..+|++..+.+.. .....+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655533 34445555555554 55666666666666554321 014455556666655 5666667777666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHcCC
Q 047017 465 MFEKGCKPNETTYVLLIEGIGYG-G-----WRAEAMELANALVSMHA 505 (534)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 505 (534)
..+. ..+...+..|...|... | ++++|..+|+++.+.+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6665 12333455555555432 2 67777777777766654
No 108
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.20 E-value=7.9e-10 Score=84.08 Aligned_cols=117 Identities=8% Similarity=0.013 Sum_probs=103.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047017 400 IEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYV 478 (534)
Q Consensus 400 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 478 (534)
+.|+ ...+...+..+.+.|++++|.+.|++.++.. +.+...|..+..++...|++++|+..++++++.++ .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHH
Confidence 3444 3567788899999999999999999998763 34688899999999999999999999999999764 3788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 479 LLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
.++.++...|++++|++.|+++++.+|.+++++..+++++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988775
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=3.7e-09 Score=88.97 Aligned_cols=177 Identities=14% Similarity=0.053 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHH
Q 047017 282 DAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG----NADQALEIF 357 (534)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~ 357 (534)
+|...|++..+.| ++..+..+...|...+++++|+..|++..+.+ ++..+..+...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666653 56666677777777777777777777777654 55666666666666 5 677777777
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 047017 358 EKLSDVGCPPNVSSYNTMFSALWS----SGDKIRALGMISEMLSKGIE-PDEITYNSLISCLCR----DGMVDEAVGLLV 428 (534)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 428 (534)
++..+.+ ++..+..+...|.. .+++++|+..|++..+.+.. .....+..|..+|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 56666677777765 67777888888777765421 125666677777776 677888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 047017 429 DMESTRFRPTVISYNIIILGFCKT-R-----RINESIEVLAAMFEKGC 470 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 470 (534)
+..+. ..+...+..|...|... | ++++|..++++..+.|.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87765 23444566666666543 2 78888888888877763
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=5e-10 Score=99.30 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=133.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+...|++++|+..|+++++.. |.+..++..++.++...|++++|...++.+....|............+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3456677788889999999999999998875 667889999999999999999999999999887664444444445557
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHhH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT--VITYTILIQATMLEGQTDK 194 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~ 194 (534)
...++.+.|.+.+++..... +.+...+..+...+...|++++|...|.++++.. |.+ ...+..++.++...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCc
Confidence 77888888999999888773 4467888899999999999999999999999875 333 6688899999999999999
Q ss_pred HHHHHHHh
Q 047017 195 AMKLLDEM 202 (534)
Q Consensus 195 a~~~~~~~ 202 (534)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.18 E-value=2.8e-10 Score=100.93 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=98.2
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 047017 331 LPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITY-NS 409 (534)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 409 (534)
+.+...+..+...+...|++++|+..|+++.+.. |.+...+..++..+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344555666666667777777777777766654 556666666666777777777777777666553 2333222 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKP-NETTYVLLIEGIGYGG 488 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 488 (534)
....+...++.++|...+++..... +.+...+..+...+...|++++|...+.++++..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223445555666666666665542 2245556666666666666666666666666653321 1455566666666666
Q ss_pred CHHHHHHHHHHHH
Q 047017 489 WRAEAMELANALV 501 (534)
Q Consensus 489 ~~~~A~~~~~~~~ 501 (534)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666666554
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=3.7e-10 Score=92.06 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGS-L 151 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 151 (534)
..+...+..+...|++++|...|+.+.+.+|.+..++..+..++...|++++|...++++... .|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 455667777788888888888888887777788888888888888888888888888877655 3343332222211 1
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC-CHh
Q 047017 152 CSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP-DVI 230 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 230 (534)
...+....|...+++..+.. |.+...+..+..++...|++++|...|+++ ......+ +..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNI------------------LKVNLGAQDGE 145 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTTTTTH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccChHH
Confidence 11122233555666665543 444555566666666666666655555544 2222111 233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 231 SYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
.+..+..++...|+.++|...|++.+
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45555555555555555555555443
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=5.6e-09 Score=88.91 Aligned_cols=191 Identities=10% Similarity=0.032 Sum_probs=117.5
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh---hH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCL-P-DIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVS---SY 372 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~ 372 (534)
+...+..++..+...|++++|...|+++++.... + ....+..++.++...|++++|+..|+++.+.. |.+.. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445666777888889999999999988875311 1 13567778888889999999999999888763 33332 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhh----------
Q 047017 373 NTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT-VIS---------- 441 (534)
Q Consensus 373 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~---------- 441 (534)
..+..++...+.. .+ ..+..+...+...|++++|...|+++++. .|+ ...
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 4455555432100 00 00111112222334444555555544443 111 111
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 442 -------YNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 442 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
...+...+...|++++|+..++++++..+... ...+..++.++.+.|++++|++.++++...+|.+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12456677888889999998888888643311 25677788888888999999998888888877654
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.1e-09 Score=107.57 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 313 GRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMI 392 (534)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 392 (534)
|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. |.+...+..+..++...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44455555555554432 2234445555555555555555555555555443 334445555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 047017 393 SEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT---RRINESIEVLAAMFEK 468 (534)
Q Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 468 (534)
++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5554431 2234444444555555555555555555544431 11334444444444444 5555555555555443
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=1.4e-09 Score=106.85 Aligned_cols=150 Identities=10% Similarity=-0.075 Sum_probs=94.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVL 129 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 129 (534)
.|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+..|.+..++..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777776654 4456777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHhHHHHHHHHh
Q 047017 130 DRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLE---GQTDKAMKLLDEM 202 (534)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~ 202 (534)
++..+.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..++.++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 7776652 2346667777777777777777777777777664 45566677777777777 7777777777665
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.10 E-value=7.5e-10 Score=99.37 Aligned_cols=226 Identities=12% Similarity=0.008 Sum_probs=151.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-CCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHHHHH
Q 047017 241 NMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCR-DGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLDLAI 319 (534)
Q Consensus 241 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (534)
..|++++|.+++++..+... . .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35678888888887765421 1 1223 57788888777664 45677889999999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 047017 320 EFLDYMISD----GCLP-DIVNYNTILAAFCKNGNADQALEIFEKLSDV----GCPP-NVSSYNTMFSALWSSGDKIRAL 389 (534)
Q Consensus 320 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 389 (534)
..+.++... +... -..++..+..+|...|++++|+..|++..+. |-+. ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 988887653 1111 1346778888898999999999999987553 2111 13467778888877 9999999
Q ss_pred HHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHH
Q 047017 390 GMISEMLSKGI---EP--DEITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRPT-VISYNIIILGFCKTRRINESI 459 (534)
Q Consensus 390 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 459 (534)
..+++..+... .+ ...++..+..++...|++++|...|++..+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99988875311 11 1356778888888999999999999888653 11111 225566667777789999999
Q ss_pred HHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHHHHH
Q 047017 460 EVLAAMFEKGCKP-N---ETTYVLLIEGIGYGGWRAEAME 495 (534)
Q Consensus 460 ~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~ 495 (534)
..+++.+ ..+.. + ......++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9998887 43211 1 12334455544 5677766655
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=3.5e-09 Score=80.44 Aligned_cols=95 Identities=6% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+......+.+.|++++|++.|+++++.. |.+..+|..++.++...|++++|+..|+.+.+.+|.+..+|..++.++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444445555555555555555554443 334445555555555555555555555555554444555555555555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 047017 120 NQIELANKVLDRLRSR 135 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~ 135 (534)
|++++|.+.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 5555555555554443
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.05 E-value=8.3e-09 Score=92.54 Aligned_cols=224 Identities=8% Similarity=0.027 Sum_probs=158.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHH
Q 047017 206 KKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLN-MGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 206 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
..|++++|..++++..+.... .+.. .+++++|...|..+ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 467888999999887764221 1233 57888888888765 44677889999999
Q ss_pred HHHHHHHHCCCC-CC----HhcHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhCCCHHHHH
Q 047017 285 DVLRAAKEKGLT-PD----AYSYDPLISAYCKDGRLDLAIEFLDYMISDG--C-LPD--IVNYNTILAAFCKNGNADQAL 354 (534)
Q Consensus 285 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~A~ 354 (534)
..+.++.+.... .+ ...+..+..+|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887753110 01 3467888889999999999999999887641 0 111 3567788888888 9999999
Q ss_pred HHHHHHhhCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 047017 355 EIFEKLSDVGCPP-----NVSSYNTMFSALWSSGDKIRALGMISEMLSK----GIEPD-EITYNSLISCLCRDGMVDEAV 424 (534)
Q Consensus 355 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~ 424 (534)
..|++..+..... ...++..+...+...|++++|+..+++..+. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999987642111 1457788899999999999999999998863 21111 235666777788889999999
Q ss_pred HHHHHHHhCCCCCCh------hhHHHHHHHHHhcCChHHHHH
Q 047017 425 GLLVDMESTRFRPTV------ISYNIIILGFCKTRRINESIE 460 (534)
Q Consensus 425 ~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 460 (534)
..|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999988 4 2321 1233445544 5677665555
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-08 Score=78.85 Aligned_cols=121 Identities=7% Similarity=-0.009 Sum_probs=95.2
Q ss_pred cccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 33 FDVKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
...+...|..+...+...|++++|+..|+++.... +.+..++..++.++...|++++|...++.+....+.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 34567778888888999999999999999988764 55778888888888888999999999998888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 047017 113 ISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG 155 (534)
Q Consensus 113 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 155 (534)
..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 888888888888888888887652 223455555655555443
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=3.6e-08 Score=83.11 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
.+..+...+...|++++|+..|+++. .++..++..++.++...|++++|...|+.+....|.+..++..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45677888899999999999998874 56888999999999999999999999999999989999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 119 ANQIELANKVLDRLRSRGFSPDV----------------VTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 119 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.|++++|.+.|+++.+.. +.+. ..+..+..++...|++++|...|+++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999998862 1122 677888899999999999999999998764
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=4.2e-07 Score=80.78 Aligned_cols=189 Identities=7% Similarity=0.007 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCChhhHHHHHHHHHh
Q 047017 41 MKLIKRSFRAGK-FDESLYFIESMVANGCKPDVVMCTKLIKKFFQER-KSNKAVRVMEILEKYGEPDVFAYNALISGFCK 118 (534)
Q Consensus 41 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (534)
...++...+.+. .++|+++++.++..+ +.+..+|+.-..++...| .+++++..++.+...+|.+..+|+.-..++.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 344555555554 468999999999986 667888999888888888 59999999999999999999999998888888
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHH--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 047017 119 A-N-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIE--------SAFKVFDQLLRDNCKPTVITYTILIQATML 188 (534)
Q Consensus 119 ~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 188 (534)
. + ++++++++++++.+.. +.|..+|+.-..++.+.|.++ ++++.++++++.+ +.|...|+....++.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 7 7 8999999999999874 347778877666666666666 8999999999886 7788889888887777
Q ss_pred cCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 047017 189 EGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGK 244 (534)
Q Consensus 189 ~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (534)
.+.... ....++++++.+++..... +-|...|+.+-..+.+.|.
T Consensus 214 l~~~~~-----------~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAET-----------SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCC-----------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred cccccc-----------chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665110 0001233344444445543 3466777766666655554
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=6.8e-09 Score=81.30 Aligned_cols=126 Identities=11% Similarity=-0.004 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
..+...+...+...+-+.+++. .. |.+...+..++..+...|++++|...|+.+...+|.++..|..+..++
T Consensus 9 ~~~~~~l~~~~~~~~~l~~al~-------l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 9 ESISTAVIDAINSGATLKDINA-------IP-DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY 80 (151)
T ss_dssp CHHHHHHHHHHHTSCCTGGGCC-------SC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHhC-------CC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555555555555444432 22 445667788888888888888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
...|++++|.+.|+++.+.. +.+...|..+..+|...|++++|...|+++++..
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888887763 3357778888888888888888888888888763
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.98 E-value=6.7e-09 Score=91.62 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=61.0
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFS 377 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 377 (534)
+...+..++..+...|++++|...|++++... +.+...+..+..+|...|++++|+..++++.+.. |.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666553 3355566666666666666666666666666653 455566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047017 378 ALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 378 ~~~~~~~~~~a~~~~~~~~~ 397 (534)
++...|++++|...++++.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.98 E-value=2.2e-08 Score=80.50 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047017 372 YNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK 451 (534)
Q Consensus 372 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 451 (534)
+..++..+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444455555555555555544431 2234444444444555555555555555444431 1233444444444555
Q ss_pred cCChHHHHHHHHHHHHc
Q 047017 452 TRRINESIEVLAAMFEK 468 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~ 468 (534)
.|++++|...++++++.
T Consensus 94 ~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 94 LGKFRAALRDYETVVKV 110 (166)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 55555555555554443
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=3.9e-09 Score=82.92 Aligned_cols=122 Identities=11% Similarity=-0.114 Sum_probs=93.9
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 391 MISEMLSKGIEP-DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
.++++... .| +...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..++++++.+
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 33 44566777888888999999999998887753 3367788888889999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
+. +...+..++.++...|++++|+..|+++++..|.++.......+
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 33 66778888999999999999999999999988877755443333
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=2.3e-08 Score=80.47 Aligned_cols=130 Identities=7% Similarity=0.033 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|...|+++++.. +.+..++..++.++...|++++|...++.+....|.+..++..++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4456777777888888888888888877764 556777778888888888888888888888877777777888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHcCCCHHHHHHHHHHHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYN--IMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
...|++++|.+.|+++.+.. +.+...+. ..+..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877652 22344443 33333666777777777776654
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-08 Score=78.33 Aligned_cols=119 Identities=7% Similarity=-0.030 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++... .+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 345677888888889999999999999888763 33677888888899999999999999999988753 3678888999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHH
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLD 522 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 522 (534)
.++...|++++|.+.++++++..|.++..+..++.++...+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999899998888887654
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.96 E-value=2.3e-08 Score=75.86 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|..+++++.+..+ .+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4667777888888899999999998887653 33567788888889999999999999999988653 367788889999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLL 521 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 521 (534)
+...|++++|..+++++++..|..+..+..++.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999998888888776543
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.95 E-value=1.5e-08 Score=77.71 Aligned_cols=120 Identities=7% Similarity=-0.068 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
+...+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++++..+ .+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 34567777788888899999999998887653 33677788888899999999999999999988753 36778888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
.+...|++++|...++++++..|.++..+..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888877654
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=2.3e-07 Score=82.49 Aligned_cols=163 Identities=10% Similarity=0.007 Sum_probs=116.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHh------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVS------SYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYN 408 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 408 (534)
.+..+...|++++|...+++..+.. +.++. .+..+...+...+++++|+..++++.+.... ++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 4566777888888888888877642 21221 2234556666677888888888888864222 22 23678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHH
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMEST-----RFRP-TVISYNIIILGFCKTRRINESIEVLAAMFEK----GCKPN-ETTY 477 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 477 (534)
.++.+|...|++++|...++++.+. +..+ ...++..++.+|...|++++|+.+++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888899999999988887631 1111 2346778888999999999999999888763 22222 6778
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHc
Q 047017 478 VLLIEGIGYGG-WRAEAMELANALVSM 503 (534)
Q Consensus 478 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 503 (534)
..++.++...| ++++|.+.+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999 469999999998874
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.94 E-value=8.6e-09 Score=88.43 Aligned_cols=188 Identities=7% Similarity=-0.109 Sum_probs=92.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHhhHHHH-------HHHHHhcCCHhHHHHHHHHHHHcCCCC----------------
Q 047017 49 RAGKFDESLYFIESMVANGCKPDVVMCTKL-------IKKFFQERKSNKAVRVMEILEKYGEPD---------------- 105 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------- 105 (534)
..+++..|++.|.++.+.. |.....|..+ ..++...++..++...+.......|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566666666666666654 4455666655 445555555555555554444422110
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--Hhh
Q 047017 106 -----VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPT--VIT 178 (534)
Q Consensus 106 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 178 (534)
......++..+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 112333455555566666666666555543 2322244444455556666666666665443321 111 124
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 179 YTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQP--DVISYNMLLRTLLNMGKWEEGEKLMTEMI 256 (534)
Q Consensus 179 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 256 (534)
+..+..++...|++++|+..|++. ......| ..........++.+.|+.++|..+|+++.
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a------------------~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEA------------------NDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH------------------HTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------hcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555555555555555543 2111102 12234444455555555555555555555
Q ss_pred HC
Q 047017 257 SR 258 (534)
Q Consensus 257 ~~ 258 (534)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=7.2e-09 Score=81.34 Aligned_cols=110 Identities=13% Similarity=-0.081 Sum_probs=76.1
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047017 59 FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFS 138 (534)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 138 (534)
.|++++... +.+...+..++..+...|++++|...|+.+...+|.+...|..+..++...|++++|.+.|+++.... +
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444433 33555666677777777777777777777777777777777777777777777777777777776652 2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 139 PDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 139 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
.+...+..+..+|...|++++|...|++.++.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777664
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=1.2e-08 Score=79.97 Aligned_cols=98 Identities=9% Similarity=0.040 Sum_probs=73.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...+..+...+.+.|++++|+..|++++..+ |.+...|..++.++...|++++|+..|+.+...+|.++.+|..+..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456666777777777777777777777765 556777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 047017 117 CKANQIELANKVLDRLRSR 135 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~ 135 (534)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777766
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=8.2e-08 Score=80.88 Aligned_cols=128 Identities=11% Similarity=-0.020 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
.+..++..+...|++++|+..|+++. +|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556666777777777777777663 4466777777777777777777777777777652 335566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTV----------------ISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..|++++|...++++.+.... +. ..+..+..++...|++++|...++++++..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777665221 22 455666666777777777777777766653
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.92 E-value=2.9e-08 Score=90.04 Aligned_cols=87 Identities=11% Similarity=-0.097 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..|..+..++...|++++|+..++++++..+ .+...+..++.+|...|++++|+..|+++++..|.++.++..++.++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4555666666666666666666666666542 255556666666666666666666666666666666666666666666
Q ss_pred hHHHHHHh
Q 047017 520 LLDVYKEI 527 (534)
Q Consensus 520 ~~~~~~~~ 527 (534)
..++++++
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=1.3e-08 Score=87.38 Aligned_cols=199 Identities=6% Similarity=-0.067 Sum_probs=142.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHhhCCCCCC---------------
Q 047017 311 KDGRLDLAIEFLDYMISDGCLPDIVNYNTI-------LAAFCKNGNADQALEIFEKLSDVGCPPN--------------- 368 (534)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 368 (534)
..++...|.+.|.++.... +.....|..+ ...+...++..+++..++..... +|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5788888888888888764 3455666666 44555555555555555555442 111
Q ss_pred -------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--h
Q 047017 369 -------VSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--V 439 (534)
Q Consensus 369 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 439 (534)
......+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223445677788899999999999888764 3443355666668889999999999998665431 111 2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...+|. +.+...|..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 3677788899999999999999999985432243 346677888899999999999999999999998 777766643
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=2.5e-08 Score=75.97 Aligned_cols=114 Identities=13% Similarity=-0.031 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..++++++.++. +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4566777888889999999999999888763 336778888999999999999999999999987533 67888899999
Q ss_pred HHccCCHHHHHHHHHHHHHcC------CCchHHHHHHHhhcc
Q 047017 484 IGYGGWRAEAMELANALVSMH------AISRDTFKRLNRTFP 519 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~ 519 (534)
+...|++++|...++++++.+ |.++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 888888877776653
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=2e-08 Score=81.83 Aligned_cols=123 Identities=9% Similarity=0.117 Sum_probs=105.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH-HHhcCCH--H
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG-FCKANQI--E 123 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 123 (534)
+...|++++|+..++++++.. +.+...+..++.++...|++++|...|+.+....|.+..++..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 456889999999999998875 66889999999999999999999999999999888899999999999 8899998 9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
+|...++++.+.. +.+...+..+..++...|++++|...|+++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998873 3357788899999999999999999999999875
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=6.5e-09 Score=91.73 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSL 151 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (534)
...+..++..+...|++++|+..|+.+....|.+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555442 22344555555555
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 047017 152 CSRGMIESAFKVFDQLLR 169 (534)
Q Consensus 152 ~~~g~~~~a~~~~~~~~~ 169 (534)
...|++++|...|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.90 E-value=3.1e-08 Score=77.22 Aligned_cols=119 Identities=8% Similarity=-0.160 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEG 483 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 483 (534)
...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|+..++++++.++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 4556667778888999999999999888753 336778888899999999999999999999987643 66778888999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHH
Q 047017 484 IGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVY 524 (534)
Q Consensus 484 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 524 (534)
+...|++++|...|+++++..|.++.......++....+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999888776666555555444443
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=4.8e-07 Score=80.40 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=124.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHH
Q 047017 77 KLIKKFFQERKSNKAVRVMEILEKYGEPDVF------AYNALISGFCKANQIELANKVLDRLRSRGFS-PD----VVTYN 145 (534)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 145 (534)
..+..+...|++++|..+++.+....+.++. .+..+...+...|++++|...++++...... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999886543333 2335677777888999999999999875322 22 23688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC-----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHH
Q 047017 146 IMIGSLCSRGMIESAFKVFDQLLRD-----NCKP-TVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRS 219 (534)
Q Consensus 146 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~ 219 (534)
.+..+|...|++++|...|+++++. +..+ ...++..++.+|.+.|++++|...+++. +.+.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-----------l~~~-- 226 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-----------IEIS-- 226 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHH--
Confidence 9999999999999999999998842 1112 2347888999999999999999998875 2222
Q ss_pred HHHcCCCCC-HhhHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047017 220 LESRGCQPD-VISYNMLLRTLLNMG-KWEEGEKLMTEMIS 257 (534)
Q Consensus 220 ~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 257 (534)
...+..+. ..+|..+..++...| ++++|.+.+++...
T Consensus 227 -~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 -CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222222 567888888999999 46999988887764
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=1.6e-06 Score=77.17 Aligned_cols=180 Identities=11% Similarity=0.038 Sum_probs=130.5
Q ss_pred CCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC-C-CHHHHHH
Q 047017 86 RKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN-QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSR-G-MIESAFK 162 (534)
Q Consensus 86 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~ 162 (534)
+..++|+.+++.++..+|.+..+|+.-..++...| .++++++.++.+.... +-+..+|+.-..++... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999999999999999999999998888 5999999999999874 33677888777777666 6 8899999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM 242 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (534)
.++.+++.. +.|..+|+.-..+..+.|.++.+ ....+.+++..++++.+.. +.|...|+.....+.+.
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~----------~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRI----------SEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcccccc----------chhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 999999876 77888887766665555544400 0001123444444446654 34777888888887777
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC
Q 047017 243 GK-------WEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK 279 (534)
Q Consensus 243 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (534)
+. ++++++.+++++...+. |...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 76 67888888888876433 66667666555555554
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.90 E-value=3.5e-08 Score=75.57 Aligned_cols=115 Identities=11% Similarity=-0.022 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+....+.+..++..++.++...|++++|.+.+++..... +.+...+..+..++..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444331 1223444444444445
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEG 190 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 190 (534)
.|++++|...+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555444432 333444444444444433
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=8.5e-08 Score=72.61 Aligned_cols=96 Identities=9% Similarity=0.138 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.+..++..+...|++++|...++.+....+.+..++..++.++...|++++|...++++.... +.+...+..+..++..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444445555544444444331 2233444444444555
Q ss_pred CCCHHHHHHHHHHHHhC
Q 047017 154 RGMIESAFKVFDQLLRD 170 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~ 170 (534)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=7e-09 Score=86.34 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---------------VISYNIIILGFCKTRRINESIEVLAAMFEKG 469 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 469 (534)
..+..+...+...|++++|...|++..+...... ...+..+..++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455666667777777777777777766421111 2677888889999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhh
Q 047017 470 CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEIS 528 (534)
Q Consensus 470 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 528 (534)
+ .+...+..++.++...|++++|+..|+++++..|.++.++..++.++...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 467888899999999999999999999999999999999999999999998888776
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.87 E-value=5.5e-06 Score=73.32 Aligned_cols=201 Identities=9% Similarity=0.075 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 047017 315 LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG--NADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD-KIRALGM 391 (534)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 391 (534)
+++++.+++.+...+ +.+..+|..-..++...+ .+++++.+++.+.+.. |.|..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555555442 334455554444444444 2455555555555543 4455555555544445554 3555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 047017 392 ISEMLSKGIEPDEITYNSLISCLCRD--------------GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKT----- 452 (534)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 452 (534)
+..+.+.. +-|...|+.....+... +.++++++.+.+.+... +-|...|+-+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 55555442 22344444443333332 33566666666666542 22555555444444333
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcch
Q 047017 453 ------RRINESIEVLAAMFEKGCKPNETTYVLLIE---GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPL 520 (534)
Q Consensus 453 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 520 (534)
+.++++++.++++++..+. +...+..++. .....|..+++..+++++++.+|.-...|..+...+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~~ 321 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 321 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 3467888889999886432 3333333322 22256788999999999999999988777777655443
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=2.3e-07 Score=82.55 Aligned_cols=162 Identities=7% Similarity=-0.008 Sum_probs=124.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C----hh
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV------VMCTKLIKKFFQERKSNKAVRVMEILEKYGEP--D----VF 107 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~ 107 (534)
+...+..+...|++++|.+.+++.++.... .. ..+..++..+...|++++|...++.+....+. + ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 456677888999999999999998876422 22 23445667778889999999999998865421 1 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-CH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSR-GFSPD-----VVTYNIMIGSLCSRGMIESAFKVFDQLLRDN----CKP-TV 176 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~ 176 (534)
+++.++..|...|++++|...|+++.+. ...|+ ..++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999998732 00122 2578889999999999999999999987542 111 15
Q ss_pred hhHHHHHHHHHhcCCHhHH-HHHHHHh
Q 047017 177 ITYTILIQATMLEGQTDKA-MKLLDEM 202 (534)
Q Consensus 177 ~~~~~l~~~~~~~g~~~~a-~~~~~~~ 202 (534)
.++..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6788999999999999999 6767664
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=1.1e-07 Score=71.14 Aligned_cols=114 Identities=10% Similarity=-0.038 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
....+..++..+...|++++|...+++..... +.+...+..++.++...|++++|...++++++..+ .+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 34566777888888999999999998887753 33677788888889999999999999999988753 36788888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
++...|++++|...++++++.+|.++..+..++.+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999988887776653
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.5e-08 Score=79.01 Aligned_cols=96 Identities=13% Similarity=-0.100 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047017 73 VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLC 152 (534)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (534)
..+..++..+...|++++|...|+.+...+|.+...|..+..++...|++++|...|+++...+ +.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3344444445555555555555555555545555555555555555555555555555554442 223344444555555
Q ss_pred cCCCHHHHHHHHHHHHh
Q 047017 153 SRGMIESAFKVFDQLLR 169 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~ 169 (534)
..|++++|...|+.+.+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555444
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.84 E-value=8.2e-08 Score=73.04 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..|..+...+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..++.+...+|.+..++..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666666777777777777777776654 4566677777777777777777777777777776667777777777777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=4.6e-07 Score=80.52 Aligned_cols=167 Identities=8% Similarity=0.015 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--H
Q 047017 336 NYNTILAAFCKNGNADQALEIFEKLSDVGCPPNV------SSYNTMFSALWSSGDKIRALGMISEMLSKGI---EPD--E 404 (534)
Q Consensus 336 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 404 (534)
.+...+..+...|++++|...+.+..+.. +... ..+..+...+...|++++|+..++++.+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445556667777777777777666542 2121 1233345556677788888888877765311 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-C
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPT-----VISYNIIILGFCKTRRINESIEVLAAMFEKG----CKP-N 473 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~ 473 (534)
.+++.++..|...|++++|...++++.+. ...|+ ..++..++.+|...|++++|+.+++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888888877621 00111 2477788888888888888888888887531 111 1
Q ss_pred HHHHHHHHHHHHccCCHHHH-HHHHHHHHHc
Q 047017 474 ETTYVLLIEGIGYGGWRAEA-MELANALVSM 503 (534)
Q Consensus 474 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 503 (534)
..++..++.++...|++++| ..++++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56777888888899999988 7778887764
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.84 E-value=9.4e-08 Score=73.94 Aligned_cols=123 Identities=12% Similarity=-0.056 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLI 481 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 481 (534)
.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++++++.++. +...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 456777788888888888888888888887753 335677888888888899999999999888887533 677888888
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCC-----chHHHHHHHhhcchHHHHHH
Q 047017 482 EGIGYGGWRAEAMELANALVSMHAI-----SRDTFKRLNRTFPLLDVYKE 526 (534)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 526 (534)
.++...|++++|+..++++++..|. .......+..+........+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888776 56666666666555444333
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=5.2e-08 Score=79.31 Aligned_cols=129 Identities=9% Similarity=0.051 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCh--H
Q 047017 380 WSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG-FCKTRRI--N 456 (534)
Q Consensus 380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 456 (534)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776642 3456777777778888888888888888777653 2356666777777 6677887 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
+|...++++++.++ .+...+..++..+...|++++|...++++++..|.++...
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888887653 3567777888888888888888888888888888766443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.83 E-value=4.8e-08 Score=81.57 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=116.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC------CCChhhHHHHHHHHHhcC
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYG------EPDVFAYNALISGFCKAN 120 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g 120 (534)
++..|++++|.+.++.+.. .......++..++..+...|++++|...++...... +....++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996665544 323567788999999999999999999999988732 344567888999999999
Q ss_pred CHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHhc
Q 047017 121 QIELANKVLDRLRSR----GFSP--DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN---CKPT--VITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~ 189 (534)
++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+..++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999987654 2111 24457788899999999999999999887431 0111 23467888899999
Q ss_pred CCHhHHHHHHHHh
Q 047017 190 GQTDKAMKLLDEM 202 (534)
Q Consensus 190 g~~~~a~~~~~~~ 202 (534)
|++++|...+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999988875
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=8.7e-08 Score=76.85 Aligned_cols=110 Identities=9% Similarity=-0.110 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047017 403 DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIE 482 (534)
Q Consensus 403 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 482 (534)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..++++++.++. +...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777778888888888888888887753 236777888888888888888888888888887533 6778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
++...|++++|+..|+++++..|.++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 88888888888888888888888887754443
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=9.9e-08 Score=86.48 Aligned_cols=123 Identities=12% Similarity=-0.014 Sum_probs=68.9
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---------------VFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...+..++..+...|++++|+..|+.+....|.+ ..++..+..++.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555554444 355555666666666666666666665554
Q ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 136 GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
. +.+...|..+..+|...|++++|...|+++++.. |.+...+..+..++...|+.+++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 2245555555566666666666666666655553 44455555555555555655555
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.80 E-value=4.5e-08 Score=73.69 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..|+.+.+.+|.+..++..+..++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356777888899999999999999998875 6688889999999999999999999999999998889999999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|...++++.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998865
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.80 E-value=7e-06 Score=72.66 Aligned_cols=212 Identities=7% Similarity=-0.021 Sum_probs=147.1
Q ss_pred hHHHHHH---HHHhcCChh-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCC
Q 047017 39 QFMKLIK---RSFRAGKFD-ESLYFIESMVANGCKPDVVMCTKLIKKFFQERK----------SNKAVRVMEILEKYGEP 104 (534)
Q Consensus 39 ~~~~l~~---~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~ 104 (534)
.|..+.. ...+.|+++ +|+.+++.++..+ |.+..+|+.-..++...+. +++++.+++.+...+|.
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 4544443 345678777 7999999999876 5677888876666655554 68899999999999999
Q ss_pred ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHhhHHH
Q 047017 105 DVFAYNALISGFCKAN--QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM-IESAFKVFDQLLRDNCKPTVITYTI 181 (534)
Q Consensus 105 ~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ 181 (534)
+..+|+.-..++.+.| ++++++++++++.+.. +.|..+|+.-..++...|. ++++++.++.+++.+ +.|...|+.
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 9999999998888888 4899999999999874 4478888888888888888 699999999999887 778888888
Q ss_pred HHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHH
Q 047017 182 LIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNM-----------GKWEEGEK 250 (534)
Q Consensus 182 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~ 250 (534)
...++...+....+- .......+.+++++..+....... +-|...|+-+-..+.+. +.++++++
T Consensus 185 R~~ll~~l~~~~~~~----~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 185 RSCLLPQLHPQPDSG----PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHSCCC----------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccc----cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777665542211000 000001123445555555556553 33666676554444443 23556666
Q ss_pred HHHHHHHC
Q 047017 251 LMTEMISR 258 (534)
Q Consensus 251 ~~~~~~~~ 258 (534)
.++++.+.
T Consensus 260 ~~~elle~ 267 (331)
T 3dss_A 260 SCKELQEL 267 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666655
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=3.2e-07 Score=68.58 Aligned_cols=97 Identities=10% Similarity=0.055 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+...|++++|...|+++.... +.+...+..++.++...|++++|...++.+....|.+..++..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345555666666666666666666665543 3455566666666666666666666666666665555666666666666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047017 118 KANQIELANKVLDRLRSR 135 (534)
Q Consensus 118 ~~g~~~~a~~~~~~~~~~ 135 (534)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 666666666666666554
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=9.1e-08 Score=72.73 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----hhhHHHH
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGF--SPD----VVTYNIM 147 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 147 (534)
++..++..+.+.|++++|+..|+++...+|.+..+|..+..+|...|++++|++.+++.++.+. .++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3445555555566666666666655555555555565566666666666666665555544310 001 1244555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDNCKPTVITYT 180 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 180 (534)
..++...|++++|++.|++.+.. .|++.+..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 56666666666666666666553 34444433
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=6.8e-08 Score=80.64 Aligned_cols=157 Identities=7% Similarity=-0.136 Sum_probs=90.3
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCH
Q 047017 346 KNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSK----GIE-PDEITYNSLISCLCRDGMV 420 (534)
Q Consensus 346 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 420 (534)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. .....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666543333221 1223445555666666666666666666655541 111 1234556666677777777
Q ss_pred HHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHccCC
Q 047017 421 DEAVGLLVDMEST----RFRP--TVISYNIIILGFCKTRRINESIEVLAAMFEKG---CKPN--ETTYVLLIEGIGYGGW 489 (534)
Q Consensus 421 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~ 489 (534)
++|...+++..+. +..+ ....+..+...+...|++++|...+++.++.. ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665432 1111 13345667777777788888887777776421 1111 2335677778888888
Q ss_pred HHHHHHHHHHHHHc
Q 047017 490 RAEAMELANALVSM 503 (534)
Q Consensus 490 ~~~A~~~~~~~~~~ 503 (534)
+++|.+.++++++.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888775
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.78 E-value=6.8e-08 Score=72.68 Aligned_cols=96 Identities=9% Similarity=-0.094 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 409 SLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 409 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..++++++.++. +...+..++.++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 33444445555555555555554431 123444445555555555555555555555554322 3444445555555555
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 047017 489 WRAEAMELANALVSMHAI 506 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~ 506 (534)
++++|+..++++++.+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 555555555555554443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=1.2e-07 Score=72.13 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-------hhhHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD-------VFAYN 110 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 110 (534)
..+..+...+.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|+..++...+..|.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356788899999999999999999999875 6678899999999999999999999999988776332 23677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047017 111 ALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNI 146 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 146 (534)
.+..++...|++++|++.|++.+.. .||......
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 7888888999999999999998875 566655443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.6e-07 Score=72.48 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047017 402 PDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT----VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTY 477 (534)
Q Consensus 402 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 477 (534)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|+..++++++..+ .+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHH
Confidence 35667777788888888888888888888775 444 56777888888899999999999999888643 367788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
..++.++...|++++|...++++++..|.++..+..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 888889999999999999999999999998888877766543
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.7e-07 Score=70.45 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=93.2
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPD---VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNA 111 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 111 (534)
.+...+..+...+...|++++|+..|+++++.. +.+ ...+..++.++...|++++|+..++.+....|.+..++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 356778889999999999999999999998864 222 6788889999999999999999999999888888899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHH
Q 047017 112 LISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIG 149 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 149 (534)
+..++...|++++|.+.|++..+. .| +...+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 999999999999999999998876 34 3444444433
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.72 E-value=3.2e-07 Score=73.48 Aligned_cols=99 Identities=6% Similarity=0.027 Sum_probs=88.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
+...|..+...+...|++++|+..|+++++.. +.+...|..++.++...|++++|+..|+.+...+|.+..+|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888889999999999999999998875 56788899999999999999999999999999988889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 047017 116 FCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~ 135 (534)
+...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999999998876
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.72 E-value=1.3e-07 Score=75.56 Aligned_cols=122 Identities=14% Similarity=0.011 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST--------R---------FRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
.+...+..+.+.|++++|...|.+.+.. . .+.+...|..+..+|...|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555566666666666555432 0 0113467888899999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch-HHHHHHHhhcchHHHHHHhh
Q 047017 469 GCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR-DTFKRLNRTFPLLDVYKEIS 528 (534)
Q Consensus 469 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 528 (534)
++ .+...|..++.++...|++++|...|+++++.+|.++ .+...+..+....+++++..
T Consensus 93 ~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 93 EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 3788899999999999999999999999999999988 66777777777776665543
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.71 E-value=2.5e-07 Score=76.82 Aligned_cols=120 Identities=12% Similarity=-0.036 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV----------------VMCTKLIKKFFQERKSNKAVRVMEILEKYGE 103 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 103 (534)
+..+...+...|++++|+..|++++... +.+. .++..++.++...|++++|+..++.+....|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 5555666666777777777777766643 1122 4555666666666666666666666666666
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHH
Q 047017 104 PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 104 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 161 (534)
.+..++..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666665542 223445555555555444444443
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.70 E-value=2.2e-07 Score=88.11 Aligned_cols=123 Identities=10% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT--------------VISYNIIILGFCKTRRINESIEVLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 471 (534)
.+..+...+.+.|++++|...|+++++...... ...|..+..+|.+.|++++|+..++++++..+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555555555666666666655554311111 356777777778888888888888888776533
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHHhhh
Q 047017 472 PNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKEISH 529 (534)
Q Consensus 472 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 529 (534)
+...+..+..+|...|++++|+..|+++++..|.+..++..++.++...++++++.+
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777888888888888888888888888888888888888888777776654
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.70 E-value=2.4e-07 Score=70.83 Aligned_cols=118 Identities=12% Similarity=0.081 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC----HHHH
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCK--PN----ETTY 477 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 477 (534)
...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++++.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888877653 335667777888888888888888888888775321 12 6677
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHH
Q 047017 478 VLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDV 523 (534)
Q Consensus 478 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 523 (534)
..++.++...|++++|...++++++..| ++.....+..+....++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 7888888899999999999999998887 57777777776655544
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=3.3e-07 Score=67.70 Aligned_cols=99 Identities=6% Similarity=-0.109 Sum_probs=58.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP--DVVTYNIMI 148 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 148 (534)
+...+..++..+...|++++|...|+.+....+.+..++..+..++...|++++|.+.+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555555566666666666666666665555555566666666666666666666666665542 22 345555566
Q ss_pred HHHHcC-CCHHHHHHHHHHHHhC
Q 047017 149 GSLCSR-GMIESAFKVFDQLLRD 170 (534)
Q Consensus 149 ~~~~~~-g~~~~a~~~~~~~~~~ 170 (534)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=1.8e-07 Score=69.25 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=90.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--ChhhHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEP--DVFAYNALI 113 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 113 (534)
+...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|...++.+.+..+. +..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34567788899999999999999999998875 567889999999999999999999999999999888 899999999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhC
Q 047017 114 SGFCKA-NQIELANKVLDRLRSR 135 (534)
Q Consensus 114 ~~~~~~-g~~~~a~~~~~~~~~~ 135 (534)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999999877
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.68 E-value=1.4e-07 Score=72.10 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-------hhhHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD-------VFAYNA 111 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~ 111 (534)
.|..+...+...|++++|...|+++.... +.+...+..++.++...|++++|...++.+....+.+ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555443 3344555555555555555555555555554443222 444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 112 LISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 112 l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
++.++...|++++|.+.|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 455555555555555555554443
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.68 E-value=5e-07 Score=69.73 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
...|..+...+...|++++|+..|+.++... +.+..++..++.++...|++++|...++.+...+|.+..++..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555555555555555555443 334455555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 047017 117 CKANQIELANKVLDRLRS 134 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~ 134 (534)
...|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.66 E-value=6.4e-07 Score=68.26 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---hhhHHHHH
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDV---VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---VFAYNALI 113 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 113 (534)
+..+...+...|++++|+..|+.+.+.. +.+. .++..++.++...|++++|...|+.+....|.+ ..++..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456666777777777777777777653 2233 466677777777777777777777777766655 56677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 047017 114 SGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
.++...|++++|...|+.+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=9.6e-07 Score=67.27 Aligned_cols=108 Identities=12% Similarity=0.004 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 047017 408 NSLISCLCRDGMVDEAVGLLVDMESTRFRPTV---ISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN--ETTYVLLIE 482 (534)
Q Consensus 408 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 482 (534)
..+...+...|++++|...|+++.+.... +. ..+..+..++...|++++|...++++++..+... ...+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34566777888899999988888775322 23 4677788888899999999999999888653311 567778888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 483 GIGYGGWRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
++...|++++|...++++++..|.++.+.....+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8999999999999999999998888766554443
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.64 E-value=3.8e-07 Score=83.58 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
+...|..+..+|.+.|++++|+..++++++..+ .+...+..+..+|...|++++|+..|+++++..|.++.++..++.+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788899999999999999999999998753 3688889999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhhhh
Q 047017 518 FPLLDVYKEISHLA 531 (534)
Q Consensus 518 ~~~~~~~~~~~~~~ 531 (534)
+...++++++.+..
T Consensus 351 ~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 351 KQKIKAQKDKEKAA 364 (370)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.61 E-value=7e-07 Score=86.54 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=129.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047017 349 NADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD----------KIRALGMISEMLSKGIEPDEITYNSLISCLCRDG 418 (534)
Q Consensus 349 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 418 (534)
..++|++.++++...+ |.+..+|+.-..++...++ +++++..++.+.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456677777777764 5566667666666666655 778888888887753 336677777777777777
Q ss_pred --CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------
Q 047017 419 --MVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR-RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG-------- 487 (534)
Q Consensus 419 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 487 (534)
+++++++.++++.+.... +...|+.-..++...| .++++++.++++++.++. +...|......+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668888888888876433 6777777777777777 788888888888877644 677777666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCchHHHHHHHhhcchHHHHHH
Q 047017 488 ------GWRAEAMELANALVSMHAISRDTFKRLNRTFPLLDVYKE 526 (534)
Q Consensus 488 ------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 526 (534)
+.++++.+++++++..+|.+.++|..+..++...+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999988777555
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.57 E-value=3e-07 Score=87.56 Aligned_cols=121 Identities=9% Similarity=-0.002 Sum_probs=96.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047017 410 LISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGW 489 (534)
Q Consensus 410 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 489 (534)
+...+...|++++|.+.+++..+.. +.+...|..+..+|...|++++|+..++++++..+ .+...+..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445567888899999988887752 33577888888999999999999999999988753 367888888999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHhh--cchHHHHHHhhhhhc
Q 047017 490 RAEAMELANALVSMHAISRDTFKRLNRT--FPLLDVYKEISHLAT 532 (534)
Q Consensus 490 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~ 532 (534)
+++|++.++++++..|.++.++..++.+ +...+++++|...+.
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999888888888888 778899999888765
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.1e-06 Score=79.20 Aligned_cols=202 Identities=8% Similarity=-0.054 Sum_probs=141.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CC
Q 047017 42 KLIKRSFRAGKFDESLYFIESMVANGCKPDV----------------VMCTKLIKKFFQERKSNKAVRVMEILEKYG-EP 104 (534)
Q Consensus 42 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~ 104 (534)
.-.+.+.+.|++++|++.|..+++....... .++..++..|...|++++|...+..+.... ..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3467789999999999999999886422211 247789999999999999999999887654 11
Q ss_pred -Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--C-
Q 047017 105 -DV----FAYNALISGFCKANQIELANKVLDRLRSR----GFSPD-VVTYNIMIGSLCSRGMIESAFKVFDQLLRD--N- 171 (534)
Q Consensus 105 -~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~- 171 (534)
+. .+...+...+...|+++.|.++++..... +..+. ..++..+...|...|++++|..+++.+... +
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 168 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL 168 (434)
T ss_dssp CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc
Confidence 11 23334444555678999999999887543 22222 456778999999999999999999988653 1
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHH
Q 047017 172 --CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD--VISYNMLLRTLLNMGKWEE 247 (534)
Q Consensus 172 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 247 (534)
.+....++..++..|...|++++|...+++. ..+ ....+.++. ...+..++..+...+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----------l~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 169 DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA-----------RTA---ANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHH---HHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH-----------HHH---hhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 1223457888999999999999999998875 111 112211111 2345556666777888888
Q ss_pred HHHHHHHHHH
Q 047017 248 GEKLMTEMIS 257 (534)
Q Consensus 248 a~~~~~~~~~ 257 (534)
|...|.+...
T Consensus 235 A~~~~~~a~~ 244 (434)
T 4b4t_Q 235 AFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777766643
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=8.4e-08 Score=90.96 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=109.6
Q ss_pred CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---------------hhhHHHHHHH
Q 047017 51 GKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD---------------VFAYNALISG 115 (534)
Q Consensus 51 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~ 115 (534)
+++++|+..|+...... +.....+..++..+.+.|++++|...|+++....+.+ ..+|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555655554443321 2345677778888888888888888888888776655 5788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKA 195 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 195 (534)
+.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...++.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888773 3367788888889999999999999999988775 55667888888888888888776
Q ss_pred HH-HHHHh
Q 047017 196 MK-LLDEM 202 (534)
Q Consensus 196 ~~-~~~~~ 202 (534)
.+ .+..+
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 64 34433
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.5e-07 Score=68.38 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=81.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCc------hHHH
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAIS------RDTF 511 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 511 (534)
+...+..+...+...|++++|+..++++++..+ .+...+..++.++...|++++|+..++++++..|.+ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455677888889999999999999999998753 378888899999999999999999999999999988 7888
Q ss_pred HHHHhhcchHHHHHHhhhhhcc
Q 047017 512 KRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 512 ~~l~~~~~~~~~~~~~~~~~~k 533 (534)
..++.++...|+++++...+.+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 8999999998888777766543
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.54 E-value=1e-06 Score=70.35 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC--------C---------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVAN--------G---------CKPDVVMCTKLIKKFFQERKSNKAVRVMEILE 99 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 99 (534)
...+......+.+.|++++|+..|++++.. . .+.+...|..++.++...|++++|+..++.+.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345777888899999999999999998764 1 02233566667777777777777777777777
Q ss_pred HcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 100 KYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 100 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..+|.+..+|..++.++...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777665
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.53 E-value=6.9e-08 Score=72.29 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 047017 417 DGMVDEAVGLLVDMESTR--FRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..++++++..+. +..++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 577788888888887653 1224566777888888888888888888888887543 5777788888888888888888
Q ss_pred HHHHHHHHcCCCchHHH
Q 047017 495 ELANALVSMHAISRDTF 511 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (534)
..++++++..|.++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888777543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.5e-05 Score=75.26 Aligned_cols=197 Identities=12% Similarity=0.037 Sum_probs=91.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCH----------------hcHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEKGLTPDA----------------YSYDPLISAYCKDGRLDLAIEFLDYMISDGC-LP 332 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 332 (534)
-...+...|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+...-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345566677777777777777765322111 1244556666666666666666655543210 11
Q ss_pred CHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 047017 333 DIV----NYNTILAAFCKNGNADQALEIFEKLSDV----GC-PPNVSSYNTMFSALWSSGDKIRALGMISEMLSK--GIE 401 (534)
Q Consensus 333 ~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 401 (534)
+.. +.+.+...+...|+.+.|..+++..... +. ..-..++..++..+...|++++|..+++++... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1122222333345555665555554321 11 111234445555555555555555555554432 111
Q ss_pred --C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C-C--hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047017 402 --P-DEITYNSLISCLCRDGMVDEAVGLLVDMEST--RFR-P-T--VISYNIIILGFCKTRRINESIEVLAAMF 466 (534)
Q Consensus 402 --~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 466 (534)
+ ....+..++..|...|++++|..++++.... .+. | . ...+..++..+...|++++|...+.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1234445555555555555555555544321 011 1 0 1223334444444555555555555443
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=3.2e-07 Score=68.56 Aligned_cols=87 Identities=15% Similarity=-0.005 Sum_probs=71.2
Q ss_pred hcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047017 49 RAGKFDESLYFIESMVANG--CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELAN 126 (534)
Q Consensus 49 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 126 (534)
..|++++|+..|+++++.+ -+.+..++..++.++...|++++|+..|+.+.+..|.+..++..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999988763 24456788889999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHhC
Q 047017 127 KVLDRLRSR 135 (534)
Q Consensus 127 ~~~~~~~~~ 135 (534)
+.+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988766
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.47 E-value=4.3e-07 Score=86.44 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
...+.+.|++++|++.|+++++.. +.+..++..++.++.+.|++++|+..++++.+.+|.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344567788888888888887764 5567778888888888888888888888888877777888888888888888888
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH--HHcCCCHHHHHHHHH
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGS--LCSRGMIESAFKVFD 165 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 165 (534)
+|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888877652 2234445555444 667777777777777
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.46 E-value=7.1e-07 Score=68.93 Aligned_cols=91 Identities=11% Similarity=-0.119 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------C
Q 047017 443 NIIILGFCKTRRINESIEVLAAMFEKGCKP------N-----ETTYVLLIEGIGYGGWRAEAMELANALVSM-------H 504 (534)
Q Consensus 443 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 504 (534)
......+...|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344445555666666666666666543221 2 237788888888888888888888888888 8
Q ss_pred CCchHHH----HHHHhhcchHHHHHHhhhhhcc
Q 047017 505 AISRDTF----KRLNRTFPLLDVYKEISHLATK 533 (534)
Q Consensus 505 ~~~~~~~----~~l~~~~~~~~~~~~~~~~~~k 533 (534)
|....+| ...+.++..+|++++|...+.|
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 8888888 8888888888888888877654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=1.7e-06 Score=79.21 Aligned_cols=136 Identities=4% Similarity=-0.119 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc
Q 047017 40 FMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKA 119 (534)
Q Consensus 40 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (534)
+..+...+.+.|++++|+..|+++++.. +... .... .+......+.+..+|..+..++.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666777777888888888887776510 0000 0000 0000111233344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 047017 120 NQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAM 196 (534)
Q Consensus 120 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 196 (534)
|++++|.+.++++++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...++.+++.
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555442 1234445555555555555555555555555443 334444444555554444444443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.44 E-value=2.9e-06 Score=65.52 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKP------DV-----VMCTKLIKKFFQERKSNKAVRVMEILEKY----- 101 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 101 (534)
..+......+...|++++|+..|+++++..+.. +. ..|..+..++...|++++|+..++..+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667778888999999999999988764221 22 27777777888888888888888777777
Q ss_pred --CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 102 --GEPDVFAY----NALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 102 --~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+|.+..+| .....++...|++++|+..|++..+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66666677 77777777777777777777776544
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=7.7e-07 Score=80.64 Aligned_cols=130 Identities=10% Similarity=-0.041 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 369 VSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
...+..+...+...|++++|...|++++.. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666677777788888888888887764 344321 111222222221110 1245556666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 449 FCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 449 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
|...|++++|+..++++++..+ .+...+..+..+|...|++++|+..|+++++..|.++.++..++.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 6666666666666666666542 25566666666666666666666666666666666666666666553
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.40 E-value=7.6e-07 Score=70.94 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Ch
Q 047017 370 SSYNTMFSALWSSGDKIRALGMISEMLSKGIE-PD----EITYNSLISCLCRDGMVDEAVGLLVDMEST----RFRP-TV 439 (534)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 439 (534)
.++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46677788888899999999999887753110 11 136677788888889999999988887643 1111 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 440 ISYNIIILGFCKTRRINESIEVLAAMFEK----GCK-PNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 440 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
..+..+..++...|++++|...+++.++. +.. ....++..+...+...|++++|.+.++++++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45667788888889999998888888763 111 1134566777888888889999888888876543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.38 E-value=1.6e-06 Score=69.10 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCC----h
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCK-PD----VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPD----V 106 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~ 106 (534)
..+..+...+...|++++|+..++++.+.... .+ ..++..++..+...|++++|...++...... ..+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666777777788888888888776653111 01 1355666667777777777777776665443 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 107 FAYNALISGFCKANQIELANKVLDRLRSR----GFSP-DVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 107 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
.++..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34555566666666666666666655432 1000 12334445555555555555555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.9e-06 Score=78.11 Aligned_cols=130 Identities=11% Similarity=0.089 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-----------------hhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDV-----------------VMCTKLIKKFFQERKSNKAVRVMEILEK 100 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 100 (534)
..+..+...+.+.|++++|+..|++++... +.+. .+|..++.++.+.|++++|+..++.+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346667777888999999999999988753 2222 2677777777888888888888888877
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHH-HHcCCCHHHHHHHHHHHHhC
Q 047017 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP-DVVTYNIMIGS-LCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 170 (534)
.+|.+..++..+..+|...|++++|...|+++.+. .| +...+..+... ....+..+++...|..+...
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 77777778888888888888888888888877655 33 34444444444 23345566667777776654
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.31 E-value=4.2e-06 Score=58.91 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhhc
Q 047017 439 VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRTF 518 (534)
Q Consensus 439 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 518 (534)
...+..+...+...|++++|...++++++..+ .+...+..+..++...|++++|...++++++.+|.++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45677788888889999999999999888753 36778888999999999999999999999999999999998888877
Q ss_pred chH
Q 047017 519 PLL 521 (534)
Q Consensus 519 ~~~ 521 (534)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.31 E-value=1.7e-06 Score=66.62 Aligned_cols=100 Identities=13% Similarity=0.037 Sum_probs=81.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----------hHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKS----------NKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
.-+.+.+++|++.++..++.. |.+...|..++.++...+++ ++|+..|+++++.+|.+..+|..+..+|
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 445678899999999999876 77899999999999888775 4999999999999999999999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 117 CKAN-----------QIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 117 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
...| ++++|.+.|++.++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 8875 788888888888876 666555544433
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=0.00014 Score=70.53 Aligned_cols=193 Identities=6% Similarity=-0.020 Sum_probs=144.4
Q ss_pred HHHhcCCh-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHHHcCCCChhhHHHHHH
Q 047017 46 RSFRAGKF-DESLYFIESMVANGCKPDVVMCTKLIKKFFQERK----------SNKAVRVMEILEKYGEPDVFAYNALIS 114 (534)
Q Consensus 46 ~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~ 114 (534)
...+.|++ ++|++.++.++..+ |.+..+|+.-..++...|+ +++++..++.+...+|.+..+|..-..
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555 57799999999876 6678889988888888887 999999999999999999999999999
Q ss_pred HHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 115 GFCKAN--QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRG-MIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQ 191 (534)
Q Consensus 115 ~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 191 (534)
++.+.| +++++++.++++.+.. +.+..+|+.-..++...| .++++++.++++++.+ +.+...|+....++...+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 999999 7799999999999884 347888998888888889 8999999999999886 7788888888777665422
Q ss_pred HhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047017 192 TDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWE 246 (534)
Q Consensus 192 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (534)
..++.. ......+.++++++.++...... +.+...|+.+...+.+.+..+
T Consensus 194 ~~~~~~----~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 194 QPDSGP----QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCCSSS----CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccc----cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 100000 00001133455556665556553 336677777777776666543
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=1.8e-05 Score=55.61 Aligned_cols=80 Identities=11% Similarity=0.183 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
..+..+...+...|++++|+..|+++++.. +.+...+..++.++...|++++|...|+++....|.+..++..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445556666666666666666666666553 4455566666666666666666666666666666666666665555554
Q ss_pred h
Q 047017 118 K 118 (534)
Q Consensus 118 ~ 118 (534)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 4
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.3e-06 Score=64.50 Aligned_cols=87 Identities=8% Similarity=0.091 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC------hhhHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPD------VFAYNA 111 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 111 (534)
..|..+...+...|++++|+..|+++++.. +.+...+..++.++...|++++|+..++.+....|.+ ..++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344555555555566666666665555543 3345555555555555555555555555555554444 334444
Q ss_pred HHHHHHhcCCHHHH
Q 047017 112 LISGFCKANQIELA 125 (534)
Q Consensus 112 l~~~~~~~g~~~~a 125 (534)
+..++...|+.+.|
T Consensus 84 ~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 84 LELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhHhhh
Confidence 44444444443333
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.16 E-value=2e-05 Score=58.40 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 047017 422 EAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALV 501 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 501 (534)
+|...+++..+.. +.+...+..+..++...|++++|+..++++++.++ .+...+..++.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666643 23566777777788888888888888888877653 356677778888888888888888888888
Q ss_pred HcCCC--chHHHHHHHhhcchHHHHH
Q 047017 502 SMHAI--SRDTFKRLNRTFPLLDVYK 525 (534)
Q Consensus 502 ~~~~~--~~~~~~~l~~~~~~~~~~~ 525 (534)
+..|. .......+...+...++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~ 106 (115)
T 2kat_A 81 AAAQSRGDQQVVKELQVFLRRLARED 106 (115)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccHHHHHHHHHHHHHhcccc
Confidence 77653 3344455555555554443
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.15 E-value=1.8e-05 Score=58.64 Aligned_cols=80 Identities=13% Similarity=0.097 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
+|+..|+++++.. +.+...+..++.++...|++++|+..|+.+....|.+..++..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666677766654 456667777777777777777777777777777676777777777777777777777777777654
Q ss_pred C
Q 047017 135 R 135 (534)
Q Consensus 135 ~ 135 (534)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.00012 Score=56.07 Aligned_cols=111 Identities=6% Similarity=-0.088 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHH
Q 047017 384 DKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCK----TRRINESI 459 (534)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 459 (534)
++++|+..|++..+.| .++.. +...|...+.+++|.+.|++..+.| +......|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666554 22222 4455555555666666666666542 44555556666655 56677777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCC
Q 047017 460 EVLAAMFEKGCKPNETTYVLLIEGIGY----GGWRAEAMELANALVSMHA 505 (534)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 505 (534)
.+|++..+.| +...+..|...|.. .+++++|.++|+++.+.+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766654 45556666666666 6677777777777776643
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.09 E-value=1.7e-05 Score=61.09 Aligned_cols=98 Identities=8% Similarity=-0.104 Sum_probs=65.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047017 417 DGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR----------INESIEVLAAMFEKGCKPNETTYVLLIEGIGY 486 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 486 (534)
.+.+++|.+.+++..+.. +.+...|..+..++...++ +++|+..|+++++.++. +..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 345566666666665542 2245555555555555544 45888888888887543 66777778888876
Q ss_pred cC-----------CHHHHHHHHHHHHHcCCCchHHHHHHHh
Q 047017 487 GG-----------WRAEAMELANALVSMHAISRDTFKRLNR 516 (534)
Q Consensus 487 ~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 516 (534)
.| ++++|++.|+++++++|.+......+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 64 8999999999999999987755555433
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=1.5e-05 Score=75.37 Aligned_cols=132 Identities=11% Similarity=0.006 Sum_probs=96.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRD-----N--CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES 222 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 222 (534)
.+...|++++|+.++++.++. | .+....+++.|+.+|...|++++|..++++. +.++.....
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----------L~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-----------VDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHHcC
Confidence 356789999999999988753 2 1223457899999999999999999998865 555555444
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-hhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047017 223 RGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR-----GLE-PN-VVTYSILISSLCRDGKTEDAVDVLRAAKE 292 (534)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (534)
.+.+....+++.|...|...|++++|+.++++.++. |.. |+ ..+...+..++...+.+++|..++..+.+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444567899999999999999999999887643 321 21 23445566667777788888888877765
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=1.4e-05 Score=75.48 Aligned_cols=134 Identities=8% Similarity=-0.003 Sum_probs=100.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC---CCC---C-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCCHhhH
Q 047017 114 SGFCKANQIELANKVLDRLRSR---GFS---P-DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD-----N--CKPTVITY 179 (534)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~~~~~---~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~ 179 (534)
..+..+|++++|..++++.++. -+. | ...+++.|+.+|...|++++|..++++.+.. | .+....++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456789999999999887653 111 2 2457888999999999999999999887753 2 22334578
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047017 180 TILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISR 258 (534)
Q Consensus 180 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 258 (534)
+.|+..|...|++++|..+++++ +.++......+.+....+.+.+..++...+.+++|+.++..+.+.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~A-----------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKA-----------YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 666665544443334455677778888899999999999988653
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=0.00018 Score=55.13 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=4.5
Q ss_pred CHHHHHHHHHHH
Q 047017 349 NADQALEIFEKL 360 (534)
Q Consensus 349 ~~~~A~~~~~~~ 360 (534)
++++|+.+|++.
T Consensus 76 d~~~A~~~~~~A 87 (138)
T 1klx_A 76 DLRKAAQYYSKA 87 (138)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 333333333333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.89 E-value=6.1e-05 Score=54.00 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=31.9
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 71 DVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLR 133 (534)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 133 (534)
+..++..++.++...|++++|+..|+.+.+.+|.+..+|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555555444444555555555555555555555555444
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.89 E-value=0.00012 Score=52.30 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=46.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 445 IILGFCKTRRINESIEVLAAMFEKGCKPNET-TYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 445 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
.+..+...|++++|+..++++++..+. +.. .+..++.++...|++++|+..|+++++.+|.++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566777777777777777776422 455 677777777777777777777777777777777665
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.88 E-value=8.5e-05 Score=53.23 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=30.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 103 EPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 103 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
|.++.++..+..++...|++++|...|+++.+.. +.+...|..+..+|...|++++|.+.|++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555555555544432 1133444444555555555555555555444
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.74 E-value=0.00032 Score=53.34 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 047017 420 VDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR---RINESIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAEAM 494 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 494 (534)
...+.+.|.+....+. ++..+...+.+++++.+ +.++++.+++...+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666666666554 67888888899999988 6669999999998875 23 4566677888899999999999
Q ss_pred HHHHHHHHcCCCchHHHHHHH
Q 047017 495 ELANALVSMHAISRDTFKRLN 515 (534)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~l~ 515 (534)
++++++++..|.+..+.....
T Consensus 92 ~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999887766543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=0.00012 Score=52.22 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVV-MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
....+...|++++|+..|+++++.. +.+.. .+..++.++...|++++|...|+.+...+|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4555667777777777777776654 44555 667777777777777777777777777666555554
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.69 E-value=1.7e-06 Score=77.98 Aligned_cols=217 Identities=14% Similarity=0.094 Sum_probs=142.8
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047017 70 PDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIG 149 (534)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 149 (534)
..+..|..++++....++..+|++.|-+ ..|+..|..++.+..+.|.+++-..++....+. ..++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3566788888888888888777765533 346667788888888888888888888777655 234455567888
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh--------cccccCChHHHHHHHHHHH
Q 047017 150 SLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM--------GMCKKGMVGQAFQFVRSLE 221 (534)
Q Consensus 150 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~a~~~~~~~~ 221 (534)
+|++.++..+-.+.+. .||..-...++.-|...|.++.|.-+|..+ .+...|++..|.+.-+
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr--- 194 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR--- 194 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT---
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH---
Confidence 8888888665444322 466666677888888888888888887776 4555666666553322
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhc
Q 047017 222 SRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYS 301 (534)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (534)
...++.||-.+-.+|...+++.-|.-.--.++-. +.....++..|...|-+++.+.+++...... .....+
T Consensus 195 ---KAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 195 ---KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp ---TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred ---hcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 2347788998888988888887765543333321 1223344555666777777777776655331 234555
Q ss_pred HHHHHHHHHhc
Q 047017 302 YDPLISAYCKD 312 (534)
Q Consensus 302 ~~~l~~~~~~~ 312 (534)
|+.|.-.|.+-
T Consensus 266 FTELaILYsKY 276 (624)
T 3lvg_A 266 FTELAILYSKF 276 (624)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhc
Confidence 66666555543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.62 E-value=0.0016 Score=57.88 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=62.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchH
Q 047017 436 RPTVISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRD 509 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 509 (534)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++.++|..+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 4567788887777777899999999999999985 67778888889999999999999999999999997763
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.00075 Score=47.15 Aligned_cols=67 Identities=7% Similarity=-0.015 Sum_probs=49.7
Q ss_pred CCCHhhHHHHHHHHHhcCC---HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKFFQERK---SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.++..+..++.++...++ .++|..++++..+.+|.++.+...+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777777777654444 577778888887777777777777777777888888888888877766
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.52 E-value=0.0021 Score=57.22 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=78.1
Q ss_pred CCCHhhHHHHHHHH--HhcCC---HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhc---C-----CHHHHHHHHHHHHhC
Q 047017 69 KPDVVMCTKLIKKF--FQERK---SNKAVRVMEILEKYGEPDVFAYNALISGFCKA---N-----QIELANKVLDRLRSR 135 (534)
Q Consensus 69 ~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-----~~~~a~~~~~~~~~~ 135 (534)
+.+..+|...+++. ...++ ..+|+.+|+++.+.+|....++..+..++... + ........++.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 55666666655543 22222 36677777777777777777666555554321 1 111111222222111
Q ss_pred -CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 136 -GFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 136 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 114456666666666666677777777777777764 56666667777777777777777777766
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.49 E-value=0.00099 Score=47.88 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred ccChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChh
Q 047017 34 DVKETQFMKLIKRSFRAGKFDESLYFIESMVANG------CKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 107 (534)
.++...+..+...+.+.|++..|...|+.+++.. .......+..++.++.+.|+++.|...++.+.+..|.+..
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 3566778888888899999999999998877631 1345667788888888888888888888888887777766
Q ss_pred hHHHH
Q 047017 108 AYNAL 112 (534)
Q Consensus 108 ~~~~l 112 (534)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 54443
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.47 E-value=0.0014 Score=47.00 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHH
Q 047017 438 TVISYNIIILGFCKTRRINESIEVLAAMFEKG------CKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 438 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
+......++..+...|+++.|...++.+++.. -.+...++..++.++.+.|++++|..+++++++..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444566777777788888887777776631 123467778888888889999999999999988888888776
Q ss_pred HHHH
Q 047017 512 KRLN 515 (534)
Q Consensus 512 ~~l~ 515 (534)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.0013 Score=61.12 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-C-CHHHHH
Q 047017 413 CLCRDGMVDEAVGLLVDMEST---RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFE-----KGCK-P-NETTYV 478 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~ 478 (534)
.+...|++++|..++++..+. -..|+ ..+++.++.+|...|++++|..++++++. .|.. | ...++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344667777887777777643 11222 34667777788888888888888877764 2321 1 134566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-----cCCCchHHHH
Q 047017 479 LLIEGIGYGGWRAEAMELANALVS-----MHAISRDTFK 512 (534)
Q Consensus 479 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 512 (534)
.|+..|...|++++|+.+++++++ .|+..|.+..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 788888888888888888888776 4677764443
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.43 E-value=0.0017 Score=45.30 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=51.8
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 047017 436 RPTVISYNIIILGFCKTRR---INESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAI 506 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 506 (534)
+.+...+..+..++...++ .++|..+++++++.++. +......++..+...|++++|+.+|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777777755444 67888888888887643 6777777788888888888888888888887776
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.41 E-value=0.0016 Score=60.49 Aligned_cols=95 Identities=4% Similarity=-0.171 Sum_probs=62.5
Q ss_pred cCCHHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCC-C-CHHHHHHHHH
Q 047017 417 DGMVDEAVGLLVDMEST---RFRPT----VISYNIIILGFCKTRRINESIEVLAAMFE-----KGCK-P-NETTYVLLIE 482 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~-~~~~~~~l~~ 482 (534)
.|++++|..++++..+. -+.|+ ..+++.++.+|...|++++|..+++++++ .|.. | ...+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777665431 11222 35677777778888888888887777764 2322 1 2345677888
Q ss_pred HHHccCCHHHHHHHHHHHHH-----cCCCchHHH
Q 047017 483 GIGYGGWRAEAMELANALVS-----MHAISRDTF 511 (534)
Q Consensus 483 ~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 511 (534)
.|...|++++|+.+++++++ .|+..|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 88888888888888888776 466666443
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.34 E-value=0.0097 Score=50.67 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCH
Q 047017 420 VDEAVGLLVDMESTRFRPT---VISYNIIILGFCKT-----RRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG-GWR 490 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 490 (534)
...|...+++.++. .|+ -..|..+...|... |+.++|.+.|+++++.++.-+..++..+...++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666677777664 454 44677777777773 88888888888888875433466777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC
Q 047017 491 AEAMELANALVSMHAI 506 (534)
Q Consensus 491 ~~A~~~~~~~~~~~~~ 506 (534)
++|.++++++++..|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887776
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00065 Score=63.05 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=71.8
Q ss_pred cCCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCC
Q 047017 153 SRGMIESAFKVFDQLLRD-----N--CKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGC 225 (534)
Q Consensus 153 ~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 225 (534)
..|++++|+.++++.++. | .+....+++.|+.+|...|++++|..+++++ +.++++......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----------L~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----------IKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHHcCCCC
Confidence 468899999999988753 2 1223457899999999999999999999875 555555444433
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
+....+++.|...|...|++++|+.++++.++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33456788999999999999999999988765
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.25 E-value=0.016 Score=59.51 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=92.6
Q ss_pred HHHHHhcCChhHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCH
Q 047017 44 IKRSFRAGKFDESLY-FIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQI 122 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 122 (534)
.......+++++|.+ ++..+ + +......++..+.+.|..++|.++.+... .-.......|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-----------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD-----------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------HHHHHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc-----------hheehhhhcCCH
Confidence 455567889999877 54111 1 12233666677777788777776553211 112344567777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 123 ELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...|...|+.+...++-+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7777765432 2567777777777778888888777777642 223333344444444433333222
Q ss_pred cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047017 203 GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTE 254 (534)
Q Consensus 203 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (534)
...|++..|...+... .-+...+..|.+.+++++|..+-+.
T Consensus 734 --~~~~~~~~A~~~~~~~---------g~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 734 --ETTGKFNLAFNAYWIA---------GDIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp --HHTTCHHHHHHHHHHH---------TCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHcCchHHHHHHHHHc---------CCHHHHHHHHHHcCChHHHHHHHHH
Confidence 2234444444443221 1133445556666667776665554
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.24 E-value=3.4e-05 Score=69.82 Aligned_cols=233 Identities=10% Similarity=0.097 Sum_probs=163.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHH
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISG 115 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 115 (534)
.+.+|..+.++.+..|+..+|++.|- + ..|+..|..++.+..+.|++++-.+++....+. ..++.+=+.|+-+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 56789999999999999999988762 2 237778899999999999999999998877765 4555666788999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC--------------------CCCC
Q 047017 116 FCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDN--------------------CKPT 175 (534)
Q Consensus 116 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~~~~ 175 (534)
|++.++..+-.+++. .||......+..-|...|.++.|.-+|..+.... -..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999998766433321 3566666677777777777777777766543211 1346
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHh------------cccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047017 176 VITYTILIQATMLEGQTDKAMKLLDEM------------GMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMG 243 (534)
Q Consensus 176 ~~~~~~l~~~~~~~g~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (534)
+.||-.+..+|...+++.-|.-.--.+ .|...|.+++-+.+++.-.... ......|+.|.-.|++-
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 276 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-
Confidence 778999999999999888776554433 6777899999888888766432 34677888888777764
Q ss_pred CHHHHHHHHHHHHHC-CCC------CChhhHHHHHHHHHhCCChhHHH
Q 047017 244 KWEEGEKLMTEMISR-GLE------PNVVTYSILISSLCRDGKTEDAV 284 (534)
Q Consensus 244 ~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 284 (534)
++++..+.++..-.+ +++ -....|..++-.|..-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 455555555443222 111 13445666666676666666554
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.22 E-value=0.0036 Score=45.71 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHH
Q 047017 418 GMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINE---SIEVLAAMFEKGCKP--NETTYVLLIEGIGYGGWRAE 492 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 492 (534)
.....+.+.+.+....|. ++..+-..++++++++.+... ++.+++...+.+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555566655555443 677777788888988887666 888888888764 22 34555577888999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHH
Q 047017 493 AMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 493 A~~~~~~~~~~~~~~~~~~~~l 514 (534)
|+++++.+++..|.+..+....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999998766543
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.19 E-value=0.0014 Score=61.02 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=74.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC---C----CCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHH
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDN---C----KPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSL 220 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 220 (534)
+..+...|++++|+.++++.++.. . +....+++.|+.+|...|++++|+.+++++ +.+++..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-----------L~i~~~~ 362 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-----------MEPYRIF 362 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----------HHhHHHH
Confidence 445667899999999999998641 1 122457889999999999999999998875 5555554
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 221 ESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
.....+....+++.|...|...|++++|+.++++..+
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4443333456788899999999999999998888764
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.10 E-value=0.12 Score=52.99 Aligned_cols=127 Identities=20% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCCHH
Q 047017 238 TLLNMGKWEEGEK-LMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGRLD 316 (534)
Q Consensus 238 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (534)
.....+++++|.+ ++..+ + +......++..+.+.|.++.|.++.+ ++ ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 3445788888766 44211 1 12233666777778888888876652 11 11233456778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 317 LAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
.|.++.+. ..+...|..+...+.+.++++.|.+.|.++.. +..+...+...++.+....+.+.+.
T Consensus 670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 88877543 23667888888888888888888888887643 3344444555666555444444333
Q ss_pred H
Q 047017 397 S 397 (534)
Q Consensus 397 ~ 397 (534)
.
T Consensus 735 ~ 735 (814)
T 3mkq_A 735 T 735 (814)
T ss_dssp H
T ss_pred H
Confidence 3
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0051 Score=46.82 Aligned_cols=81 Identities=16% Similarity=0.012 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHcC-C-CChhhHHHHHHHHHhcCCHHHHHHH
Q 047017 54 DESLYFIESMVANGCKPDVVMCTKLIKKFFQER---KSNKAVRVMEILEKYG-E-PDVFAYNALISGFCKANQIELANKV 128 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~ 128 (534)
..+.+.|++..+.+ +++..+...+.-++++++ +.++++.+|+.+.+.+ | .....+..+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555554 466777777777777766 4457777777777665 3 2455666666777777777777777
Q ss_pred HHHHHhC
Q 047017 129 LDRLRSR 135 (534)
Q Consensus 129 ~~~~~~~ 135 (534)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777765
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.94 E-value=0.016 Score=43.32 Aligned_cols=62 Identities=8% Similarity=-0.041 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHH
Q 047017 452 TRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKRL 514 (534)
Q Consensus 452 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 514 (534)
.++.++|.++|+.+++.+-.- ..+|...++.-.+.|+...|++++.+++..+|.+.+.+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 356666777777666542222 55566666666667777777777777777776666555443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.093 Score=41.04 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=45.3
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHH
Q 047017 83 FQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 83 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
...|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445555555554443 2444555555555555555555555555431 2223333344455444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047017 163 VFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDE 201 (534)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 201 (534)
+-+.....| -++.....+...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333332 123333344445555555555543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.85 E-value=0.016 Score=49.42 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhc-CCHHHH
Q 047017 54 DESLYFIESMVANGCKP-DVVMCTKLIKKFFQ-----ERKSNKAVRVMEILEKYGEP-DVFAYNALISGFCKA-NQIELA 125 (534)
Q Consensus 54 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~a 125 (534)
..|..+++++++.+... +..+|..++..|.. -|+.++|.+.|++..+.+|. +..++....+.++.. |+.+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 45666777777654111 35567777777776 37777777777777777764 377777777777764 777777
Q ss_pred HHHHHHHHhCCC
Q 047017 126 NKVLDRLRSRGF 137 (534)
Q Consensus 126 ~~~~~~~~~~~~ 137 (534)
.+.+++......
T Consensus 260 ~~~L~kAL~a~p 271 (301)
T 3u64_A 260 DEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHCCG
T ss_pred HHHHHHHHcCCC
Confidence 777777777633
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.72 E-value=0.021 Score=42.78 Aligned_cols=101 Identities=8% Similarity=0.097 Sum_probs=66.6
Q ss_pred cChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHh-hHHHHHH------HHHhcCCHhHHHHHHHHHHHc
Q 047017 35 VKETQFMKLIKRSFRAGKF------DESLYFIESMVANGCKPDVV-MCTKLIK------KFFQERKSNKAVRVMEILEKY 101 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 101 (534)
-++.+|...+..+-+.|+. ++.+++|+++... +||+.. .|..-+. .+...++.++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677888888888888999 8888999988875 355422 1111111 112336777777777777665
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 102 GEPDVFAYNALISGFCKANQIELANKVLDRLRSRG 136 (534)
Q Consensus 102 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 136 (534)
++.-..+|...+..-.++|+...|.+++.+....+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 53336666666666677777777777777777664
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.15 Score=39.88 Aligned_cols=130 Identities=12% Similarity=0.200 Sum_probs=96.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
+...+..|+++.|.++.+.+ .+...|..++......|+++-|.+.|..... +..+.-.|.-.|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHH
Confidence 45577899999999998765 3788999999999999999999999998764 566667778889988
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
...++-+.....| -++....++...|+++++.++|.+.-+ -| .........|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LP------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hH------HHHHHHHHcCcHHHHHHHHHHh
Confidence 8777766666553 355666677789999999999865432 11 1111223356777777777665
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.32 E-value=0.095 Score=38.41 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=63.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 434 RFRPTVISYNIIILGFCKTRRI---NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
+..|+..+--.++++++++.+. .+++.+++...+.+..-....+-.+.-++.+.|++++|+++.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3466777777788888887764 5688899998886533345666678889999999999999999999999999876
Q ss_pred HHHH
Q 047017 511 FKRL 514 (534)
Q Consensus 511 ~~~l 514 (534)
....
T Consensus 115 ~~Lk 118 (134)
T 3o48_A 115 GALK 118 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.32 E-value=0.21 Score=37.16 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=62.1
Q ss_pred CCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 436 RPTVISYNIIILGFCKTRRI---NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 436 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
.|+..+--.+.+++.++.+. .+++.+++...+.+..-.....-.+.-++.+.|++++|+++.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56777777788888887754 568888888888654334555567788999999999999999999999999987665
Q ss_pred HH
Q 047017 513 RL 514 (534)
Q Consensus 513 ~l 514 (534)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.27 E-value=0.026 Score=43.27 Aligned_cols=119 Identities=8% Similarity=0.072 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC-------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCC
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANG-CKPD-------VVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPD 105 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~ 105 (534)
-..+..-++.+...|.|+.|+-+.+.++... .+++ ..++..++.++...|++..|...|+.+++.. +..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457788899999999999999888865431 1222 1256778889999999999999999875543 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 047017 106 VFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLL 168 (534)
Q Consensus 106 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 168 (534)
......+. ....... ......+...-.-+..+|.+.+++++|+.+++.+.
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110000 0000000 00112234444456677777777777777777654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.23 E-value=0.031 Score=40.81 Aligned_cols=82 Identities=13% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHcCCCHHHHHH
Q 047017 88 SNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIEL---ANKVLDRLRSRGFSP--DVVTYNIMIGSLCSRGMIESAFK 162 (534)
Q Consensus 88 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 162 (534)
...+.+.|......++++..+-..++.++++..+... ++.+++.+...+ .| .......|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3344444444444445555555555555555554444 555555555442 12 22333344555666666666666
Q ss_pred HHHHHHhC
Q 047017 163 VFDQLLRD 170 (534)
Q Consensus 163 ~~~~~~~~ 170 (534)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.23 E-value=0.22 Score=36.48 Aligned_cols=67 Identities=25% Similarity=0.234 Sum_probs=42.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047017 228 DVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGL 295 (534)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (534)
+...+...+..+...|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3445555666666677777777777665432 355666667777777777777777777777766664
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.58 E-value=2.3 Score=43.15 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=85.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 047017 269 ILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLI--SAYCKDGRLDLAIEFLDYMISDGCLPDIVN--YNTILAAF 344 (534)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 344 (534)
.+...+...|+.+....++..+.+.. +......+. -++...|+.+.+..+++.+.... .|.... ...+..+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 33444567777777777777766531 333333333 33446788888888877776642 222211 22344556
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 047017 345 CKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMV-DEA 423 (534)
Q Consensus 345 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A 423 (534)
+..|+.....+++..+.... ..+..-...+.-++...|+.+.+..++..+.+.+ .|....-..+..+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 67778766666887776642 2233333333334445666666666666555542 34443333333333444443 567
Q ss_pred HHHHHHHHh
Q 047017 424 VGLLVDMES 432 (534)
Q Consensus 424 ~~~~~~~~~ 432 (534)
..++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 777777764
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.18 E-value=3.2 Score=42.23 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH---------HCCCCCC-HhhHHH----HHHHHHhcCCHh----HHHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMV---------ANGCKPD-VVMCTK----LIKKFFQERKSN----KAVRVMEILEK 100 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~-~~~~~~----l~~~~~~~~~~~----~a~~~~~~~~~ 100 (534)
....++..|++.|.+.+|+.+.-++. ...+..+ ...+.. ++.+....-..+ +.+++.-.+..
T Consensus 147 Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~ 226 (963)
T 4ady_A 147 IFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLM 226 (963)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHH
Confidence 35677778888899988887654432 1100001 122222 222222222222 22222222221
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047017 101 YGEPDVFAYNALISGFCKANQIELANKVLDRLRS 134 (534)
Q Consensus 101 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 134 (534)
.. ...-|..++.+..+.++.+.+.++|..+..
T Consensus 227 k~--~~~dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 227 NM--PNCDYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HS--SSCCHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hC--CchhHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 122466777888889999999999999874
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.11 E-value=0.67 Score=34.03 Aligned_cols=64 Identities=9% Similarity=0.018 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 047017 441 SYNIIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHA 505 (534)
Q Consensus 441 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 505 (534)
.+...+......|+-+.-.+++..++. +.+|++.....+..+|.+.|+..+|.+++.++.+.|.
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555666666666666655443 2345566666666666666666666666666666554
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.06 E-value=2.8 Score=40.82 Aligned_cols=325 Identities=9% Similarity=0.020 Sum_probs=166.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 45 KRSFRAGKFDESLYFIESMVANGCKPDV-VMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
....+.|++..+..+...+... +... ..|..+...+ ......+....+...... |.....-...+..+.+.+++.
T Consensus 14 ~~a~~~~~~~~~~~l~~~l~~~--pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~-p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 14 KQAWDNRQMDVVEQMMPGLKDY--PLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTL-PPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHHHTTCHHHHHHHSGGGTTS--TTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhhcCC--CcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHhCCCHH
Confidence 3456678888777775554221 2111 1222221111 112334333333322210 222233455566667777877
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhc
Q 047017 124 LANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMG 203 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 203 (534)
....++.. .+.+...-.....+....|+..+|......+-..| ...+.....++..+.+.|.+....-.-+--.
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 76664443 14456666667777888888888888777776665 4455667778888877776654432222223
Q ss_pred ccccCChHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhCCC
Q 047017 204 MCKKGMVGQAFQFVRSLESRGCQPDVI-SYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVV---TYSILISSLCRDGK 279 (534)
Q Consensus 204 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 279 (534)
....|+...|..+...+ +++.. ....++....+ ...+...... . .++.. .+...+.-+.+ .+
T Consensus 164 al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~--~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 164 AMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T--GATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--CCChhhHHHHHHHHHHHHh-cC
Confidence 34455555555554322 22221 12222222222 2222222111 1 22222 11112222333 37
Q ss_pred hhHHHHHHHHHHHCCCCCCHhcHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 047017 280 TEDAVDVLRAAKEKGLTPDAYSYDPLIS----AYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALE 355 (534)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 355 (534)
.+.|...+....+.. ..+......+-. .....+...++...+...... ..+.....-.+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHH
Confidence 788888888776543 223332222222 222334345666666665544 2344334444444556789999998
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 356 IFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEMLS 397 (534)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 397 (534)
.|..+.... .......--+..++...|+.++|..+|..+..
T Consensus 307 ~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888876532 12334444566677788898899888888764
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.70 E-value=0.29 Score=37.61 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=73.9
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPDV-------FAYNALISGFCKANQIELANKVLDRLRSR--GFSPD 140 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 140 (534)
...+..-++.+...|.++.|+-+...+.... +++. .++..++.++...|++..|...|++.++. .+..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566778888999999999888876655 2331 26778889999999999999999997543 11111
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 141 VVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 141 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11111110 0000000 0112345566667899999999999999999986
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=2.8 Score=39.05 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--H
Q 047017 337 YNTILAAFCKNGNADQALEIFEKLSDV--GCPPN---VSSYNTMFSALWSSGDKIRALGMISEMLS----KGIEPDE--I 405 (534)
Q Consensus 337 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~ 405 (534)
...+...+...|++.+|..++..+... +..+. ...+..-++.|...+++.+|..++.++.. ...+|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 344566666666666666666665422 11111 23444455666666777777766666532 1112221 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMEST-RFRPTVISYN----IIILGFCKTRRINESIEVLAAMFEKGCKPNETTYVLL 480 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 480 (534)
.+...+..+...+++.+|...|.++.+. ....+...+. .++.+..-.+....-..++........-++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 3455555666667777766666555321 0111221111 1111111122111112222222221112345666677
Q ss_pred HHHHHcc--CCHHHHHHHHHHHHHcC
Q 047017 481 IEGIGYG--GWRAEAMELANALVSMH 504 (534)
Q Consensus 481 ~~~~~~~--g~~~~A~~~~~~~~~~~ 504 (534)
+.+|... .+++.+.+.|+..+..+
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhccc
Confidence 7776643 35666666665554443
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.12 Score=51.26 Aligned_cols=52 Identities=10% Similarity=-0.102 Sum_probs=31.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANAL 500 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 500 (534)
.|...|+++-|+++.++++..- +.+..+|..|+.+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445666666666666666642 235666666666666666666666655544
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.10 E-value=0.37 Score=44.00 Aligned_cols=130 Identities=10% Similarity=0.039 Sum_probs=70.0
Q ss_pred ccChhhHHHHHHHHH---hcCChhHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHh-HHHHHHHHHHHcCCCChh
Q 047017 34 DVKETQFMKLIKRSF---RAGKFDESLYFIESMVAN--GCKPDVVMCTKLIKKFFQERKSN-KAVRVMEILEKYGEPDVF 107 (534)
Q Consensus 34 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~ 107 (534)
.+|-..|..++.... ..|+.+.|...+++++.. |... .... ...+- .....++... ..
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L-~~~~---------~~~w~~~~r~~l~~~~------~~ 172 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVL-DDLR---------DFQFVEPFATALVEDK------VL 172 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT-GGGT---------TSTTHHHHHHHHHHHH------HH
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC-CCCC---------chhHHHHHHHHHHHHH------HH
Confidence 445566766665443 468999999999998764 3111 1100 00010 0011111111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 047017 108 AYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLR-----DNCKPTVITYT 180 (534)
Q Consensus 108 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 180 (534)
+...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 33445556666666666666666665541 23555666666667777777776666666543 36666665433
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.02 E-value=2.3 Score=45.24 Aligned_cols=59 Identities=12% Similarity=-0.017 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTV----ITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
|..++..+.+.|.++.+.+.-...++...+.+. ..|..+...+...|++++|...+..+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 445555555556666555555554443211111 13455555666666666665555443
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.47 E-value=3 Score=44.35 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=96.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCC--hHHHHHHHHHHHHcC
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGM--VGQAFQFVRSLESRG 224 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~ 224 (534)
++..+...+.++-+.++... .+.++..-..++.++...|++++|...|.+....-... .-....-+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34444455555555443322 23455555678888999999999999999873221110 000111111222211
Q ss_pred C--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047017 225 C--QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNV----VTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPD 298 (534)
Q Consensus 225 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (534)
. ..-..-|..++..+-+.+.++.+.++-...++...+-+. ..|..+++.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 1 112345677888888888888888887777664322121 2467778888888888888888877665432 3
Q ss_pred HhcHHHHHHHHHhcCCHHH
Q 047017 299 AYSYDPLISAYCKDGRLDL 317 (534)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~ 317 (534)
...+..++..++..|..+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4556666666666665443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.48 Score=47.00 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 405 ITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 405 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.=|..|+....+.+.+++|.+.|+..... +-++..+..|+..|...+
T Consensus 614 lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 614 LEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 33555555555555555555555555542 344455555555555444
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.07 E-value=7 Score=38.05 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=140.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 047017 74 MCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCS 153 (534)
Q Consensus 74 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (534)
.-..-+..+.+.+++......+.. .|.+...-.....+....|+..+|......+-..| .........++..+.+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence 334455667777887766664443 25677777777888888899888877777766554 2234444455555544
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHc---------C
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESR---------G 224 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~---------~ 224 (534)
.|.+ +....-.-+......|+...|..+...+. .........+..+... .
T Consensus 149 ~g~l-----------------t~~~~~~R~~~al~~~~~~~a~~l~~~l~----~~~~~~a~~~~al~~~p~~~~~~~~~ 207 (618)
T 1qsa_A 149 SGKQ-----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLTFART 207 (618)
T ss_dssp TTCS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhCC----HHHHHHHHHHHHHHhChHhHHHHHhc
Confidence 4432 22112222233344455555544444331 0010000111111111 0
Q ss_pred CCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047017 225 CQPDVIS---YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTY----SILISSLCRDGKTEDAVDVLRAAKEKGLTP 297 (534)
Q Consensus 225 ~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (534)
..++... +...+.-+. ..+.+.|...+....... ..+.... ..++......+...++...+...... ..
T Consensus 208 ~~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~ 283 (618)
T 1qsa_A 208 TGATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQ 283 (618)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CC
T ss_pred cCCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CC
Confidence 1222221 111222223 347899999998886543 2233322 23333344455355666666665543 23
Q ss_pred CHhcHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 047017 298 DAYSYDPLISAYCKDGRLDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSD 362 (534)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 362 (534)
+.......+....+.|+++.|...|..+.... .......--+..++...|+.++|..+|+.+..
T Consensus 284 ~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555555667899999999998886542 22344445566778889999999999999854
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.15 E-value=2 Score=29.63 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 047017 457 ESIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMH 504 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 504 (534)
+..+-++.+...++.|++.+..+.+++|.+.+++.-|.++++.+..+-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555555555555443
No 252
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.13 E-value=6.7 Score=35.56 Aligned_cols=167 Identities=11% Similarity=0.015 Sum_probs=101.1
Q ss_pred cChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCC---CCHhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCChhhH
Q 047017 35 VKETQFMKLIKRSFRAGKFDESLYFIESMVAN-GCK---PDVVMCTKLIKKFFQE-RKSNKAVRVMEILEKYGEPDVFAY 109 (534)
Q Consensus 35 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 109 (534)
..+.....+.+.|...|+.++..+++...... +.- -.......++..+... +..+.-.++.....+........|
T Consensus 17 ~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 17 IKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999998775431 001 1222344556655443 334444444444443221122233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCH
Q 047017 110 ------NALISGFCKANQIELANKVLDRLRSR--GFSPD---VVTYNIMIGSLCSRGMIESAFKVFDQLLRD--NCKPTV 176 (534)
Q Consensus 110 ------~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 176 (534)
..++..|...|++.+|.+++..+.+. ..... ...+..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 26789999999999999998888763 11111 234555667888999999999999887643 222333
Q ss_pred hhHHH----HHHHHH-hcCCHhHHHHHHHH
Q 047017 177 ITYTI----LIQATM-LEGQTDKAMKLLDE 201 (534)
Q Consensus 177 ~~~~~----l~~~~~-~~g~~~~a~~~~~~ 201 (534)
..... -+..+. ..+++..|...|-+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 32211 122344 56777777666654
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.80 E-value=6.3 Score=34.58 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=69.9
Q ss_pred HHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 44 IKRSFRAGKF---DESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 44 ~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
++..+..|+| =+|.+.++.+ ..-|.+.+++++|++++..-. ..+.+.|
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~RTi---------------~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~ 69 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETRLV---------------AARYSKQGNWAAAVDILASVS--------------QTLLRSG 69 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHH--------------HHHHHTT
T ss_pred HHHHHhCCCCccccHHHHHHHHH---------------HHHHHhhcCHHHHHHHHHHHH--------------HHHHHCC
Confidence 4455667777 6666665443 334677788888888764422 2344556
Q ss_pred CHHHHHHHH----HHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHHhc
Q 047017 121 QIELANKVL----DRLRSRGFSPDVVTYNIMIGSLCSRGMIE-SAFKVFDQLLR----DN--CKPTVITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~ 189 (534)
+...|.++. +-..+.++++|......++..+.....-+ .-..+.+.+++ .| ..-++.....++..|.+.
T Consensus 70 Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e 149 (336)
T 3lpz_A 70 QGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE 149 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc
Confidence 655554443 44444566677666666666655544311 11223333322 11 233555666677777777
Q ss_pred CCHhHHHHHH
Q 047017 190 GQTDKAMKLL 199 (534)
Q Consensus 190 g~~~~a~~~~ 199 (534)
+++.+|...|
T Consensus 150 ~~~~~Ae~H~ 159 (336)
T 3lpz_A 150 GEFEAAEKHL 159 (336)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7777666655
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=8.2 Score=35.88 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=116.9
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH----hcC
Q 047017 50 AGKFDESLYFIESMVAN-----GCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC----KAN 120 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 120 (534)
.|++++|++.+-.+.+. +..........++..+...|+++...+.+..+.+.......+...++..+. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788888777555431 234456667888999999999999988887777655433444444444332 223
Q ss_pred CHHH--HHHHHHHHHhC--C-CCC---ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHH
Q 047017 121 QIEL--ANKVLDRLRSR--G-FSP---DVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--NCKPT---VITYTILIQATM 187 (534)
Q Consensus 121 ~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 187 (534)
..+. -..+.+.+... | +.. .......|...+...|++.+|..++..+... +.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2222 11222211111 1 111 1123356788899999999999999998643 21111 346677788899
Q ss_pred hcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047017 188 LEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPD--VISYNMLLRTLLNMGKWEEGEKLMTEMIS 257 (534)
Q Consensus 188 ~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 257 (534)
..+++.+|..++.++. ........+|+ ...+...+..+...+++.+|-..|.++..
T Consensus 189 ~~~d~~~a~~~~~ki~--------------~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKIL--------------KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHH--------------HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH--------------HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999988887751 01112222222 13455566677778888888777766643
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.72 E-value=2.3 Score=31.68 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHh---HHHHHHHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 69 KPDVVMCTKLIKKFFQERKSN---KAVRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 69 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
.++..+.....-++.++.+.. +++.+++.+...++ ........++-++.+.|++++|.++.+.+++. .|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 567777777777888877654 67888888887664 45567777888899999999999999999987 6653
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.53 E-value=8.2 Score=33.59 Aligned_cols=131 Identities=10% Similarity=0.090 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN 120 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 120 (534)
..-++..+..|++=+|.+.++.+. .-|.+++++++|++++..-. ..+.+.|
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl~---------------~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~ 67 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTIA---------------NRYVRSKSYEHAIELISQGA--------------LSFLKAK 67 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHH--------------HHHHHTT
T ss_pred HHHHHHHhhccChHHHHHHHHHHH---------------HHHHHhcCHHHHHHHHHHHH--------------HHHHHCC
Confidence 334556667777777777765543 34677788888887765432 2344556
Q ss_pred CHHHHHHH----HHHHHhCCCCCChhhHHHHHHHHHcCCCHH-HHHHHHHHHHh----CC--CCCCHhhHHHHHHHHHhc
Q 047017 121 QIELANKV----LDRLRSRGFSPDVVTYNIMIGSLCSRGMIE-SAFKVFDQLLR----DN--CKPTVITYTILIQATMLE 189 (534)
Q Consensus 121 ~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~ 189 (534)
+...|.++ ++-..+.+++++......++..+.....-+ .-.++++.+++ .| ..-++.....++..|.+.
T Consensus 68 Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e 147 (312)
T 2wpv_A 68 QGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG 147 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc
Confidence 65555443 444555577777777777776665533211 12333333332 22 123667788888888888
Q ss_pred CCHhHHHHHHH
Q 047017 190 GQTDKAMKLLD 200 (534)
Q Consensus 190 g~~~~a~~~~~ 200 (534)
|++.+|...|-
T Consensus 148 ~~~~~A~~H~i 158 (312)
T 2wpv_A 148 DFVYEAERYFM 158 (312)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888877664
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.48 E-value=2.2 Score=31.30 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCCCHhhHHHHHHHHHhcCCH---hHHHHHHHHHHHcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 047017 68 CKPDVVMCTKLIKKFFQERKS---NKAVRVMEILEKYGE-PDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV 141 (534)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 141 (534)
..++..+-....-+++++.+. .+++.+++.+.+.++ .....+..++-++.+.|++++|.+..+.+.+. .|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 366777777777788877765 467888888887764 45677788888999999999999999999987 6653
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.36 E-value=2.4 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=28.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047017 340 ILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEML 396 (534)
Q Consensus 340 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 396 (534)
++..+...|++.+++..+..+.... |.+...+..++.++.+.|+..+|+..|+.+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444445555555555555554442 4445555555555555555555555555443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.93 E-value=3.4 Score=28.31 Aligned_cols=87 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVF 164 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 164 (534)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3455666666666665433 22222223345566777777777766554 667777766544 4566667777777
Q ss_pred HHHHhCCCCCCHhhH
Q 047017 165 DQLLRDNCKPTVITY 179 (534)
Q Consensus 165 ~~~~~~~~~~~~~~~ 179 (534)
.++...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666665 4444443
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.43 E-value=3.3 Score=28.36 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=52.0
Q ss_pred cCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHH
Q 047017 85 ERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVF 164 (534)
Q Consensus 85 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 164 (534)
....++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++...+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 3456667666666665443 22222223445667788888777665554 667777766544 4667777777777
Q ss_pred HHHHhCCCCCCHhhH
Q 047017 165 DQLLRDNCKPTVITY 179 (534)
Q Consensus 165 ~~~~~~~~~~~~~~~ 179 (534)
.++...| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6776665 4444444
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.96 E-value=4.5 Score=29.64 Aligned_cols=55 Identities=5% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHH
Q 047017 458 SIEVLAAMFEKGCKPNETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFK 512 (534)
Q Consensus 458 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 512 (534)
..+-++.+...++.|++.+....+++|.+.+|+.-|.++++-+..+-....+.|.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~ 126 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYP 126 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHH
Confidence 4444555555666666666666666666666666666666666655433343343
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.93 E-value=4 Score=34.36 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 413 CLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
...+.|+++++++.+..-++.. +-|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456777888887777766653 335666667777778888888888777777765
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.85 E-value=14 Score=32.52 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHhcHHHHHH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVL----RAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~ 307 (534)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. +-..+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445555777777777777664422 2244555554444433 44445667777777667776
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 047017 308 AYCKDGRLD-LAIEFLDYMIS----DG--CLPDIVNYNTILAAFCKNGNADQALEIF 357 (534)
Q Consensus 308 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 357 (534)
.+.....-+ .=..+++.+++ .+ ..-|+.....+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665544311 11222222221 11 2235566666777777777777776655
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.64 E-value=5.3 Score=27.58 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047017 355 EIFEKLSDVGCPPNVSSYNTMFSALWSSGDKIRALGMISEM 395 (534)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 395 (534)
+-++.+.....-|++......+.+|.+.+++..|..+++.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333333344444444444444444444444444333
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.99 E-value=2.5 Score=35.50 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=31.5
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 82 FFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 82 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
+.+.|++++|+.....-.+..|.|...-..++..++-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 345555666666555555555556665566666666666666666655555544
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.66 E-value=3.5 Score=28.24 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=18.8
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
-||...|..+. -.+.|-.+++...+..+...|
T Consensus 68 ~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 68 YPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp CGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 45666665543 345666666666666665554
No 267
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.25 E-value=15 Score=33.89 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=69.8
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhh--
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSR---GFSPDVVT-- 143 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~-- 143 (534)
..+...++..+.+.|+++.|.+.+..+...- ..-...+..+++.+...+++..+...+.++... +..|+...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4467788899999999999999998887654 334567888889999999999999998887543 22222211
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 047017 144 YNIMIGSLCSRGMIESAFKVFDQLLRD 170 (534)
Q Consensus 144 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 170 (534)
...-+..+...+++..|-..|-++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111223345678898888888776543
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.29 E-value=10 Score=27.82 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHH
Q 047017 55 ESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNAL 112 (534)
Q Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 112 (534)
+..+-++.+...+.-|++......++++.+.+++..|.++|+-++..-.+...+|..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 4444444444445555555555555555555555555555555554432333334433
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.99 E-value=3.4 Score=28.27 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=19.0
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047017 226 QPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRG 259 (534)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 259 (534)
-||...|..+. -.+.|-.+.+...+..+...|
T Consensus 67 ~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 67 WPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 45655555443 346677777776666665554
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.56 E-value=9.2 Score=35.37 Aligned_cols=116 Identities=12% Similarity=-0.043 Sum_probs=79.6
Q ss_pred CHhHHHHHHHHHHHcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHcCCCHHHHH
Q 047017 87 KSNKAVRVMEILEKYG---EPDVFAYNALISGFCKANQIELANKVLDRLRSR--GFSPDVVTYNIMIGSLCSRGMIESAF 161 (534)
Q Consensus 87 ~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 161 (534)
..++-........+.. ..-..+...++..|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444445555555533 224457888999999999999999999999865 22334667888899999999999999
Q ss_pred HHHHHHHhC---CCCCCHhh--HHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 162 KVFDQLLRD---NCKPTVIT--YTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 162 ~~~~~~~~~---~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
..+.++... +..++... ...-+..+...+++..|...|-++
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 999987643 22222211 111122344678999998888775
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.31 E-value=16 Score=29.20 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 418 GMVDEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 418 g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
+...++.++|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666554433 3345555666666666666666666666665555
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.16 E-value=15 Score=29.34 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047017 382 SGDKIRALGMISEMLSKGIEPD-EITYNSLISCLCRDGMVDEAVGLLVDMESTRFRP 437 (534)
Q Consensus 382 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (534)
.++...+..+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446788888888887765443 4567777777888899999999988888776555
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.55 E-value=35 Score=29.65 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHhcHHHHHH
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDV----LRAAKEKGLTPDAYSYDPLIS 307 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 307 (534)
|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-..+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344445566666666666654322 223445555444443 344445566667666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 047017 308 AYCKDGRLD-LAIEFLDYMIS----DG--CLPDIVNYNTILAAFCKNGNADQALEIFE 358 (534)
Q Consensus 308 ~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 358 (534)
.+.....-+ .=.++++.+++ .+ ..-++.....+...|.+.+++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 654422111 11222233321 11 12255666667777777777766666553
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.48 E-value=29 Score=26.27 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHH
Q 047017 458 SIEVLAAMFEKGCKP-NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDT 510 (534)
Q Consensus 458 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 510 (534)
+.++|..|...|+-. -...|...+..+...|++.+|.++|+..++.+..+.+.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 556666666654433 24455566666666666666666666666665555433
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.31 E-value=31 Score=26.11 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047017 421 DEAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPNET 475 (534)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 475 (534)
+++.++|..|...|+-.. ...|...+..+...|++.+|.++++..++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 347788888887766544 4456677777888888888888888888887777433
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.85 E-value=41 Score=25.83 Aligned_cols=51 Identities=4% Similarity=0.062 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047017 423 AVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKPN 473 (534)
Q Consensus 423 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 473 (534)
+.++|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4556666666555433 33455555666666667777777666666665554
No 277
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=63.71 E-value=14 Score=29.61 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=10.5
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 047017 448 GFCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~ 467 (534)
.|.+.|.+++|.+++++...
T Consensus 123 VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHhcchHHHHHHHHHHhc
Confidence 44555555555555555543
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.51 E-value=94 Score=28.12 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEMISRGLEPN-----VVTYSILISSLCRDGKTEDAVDVLRAAK 291 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (534)
.++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345555566666666555555544211111 1123333444555555555555555443
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=60.92 E-value=63 Score=26.68 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 047017 41 MKLIKRSFRAGKFDESLYFIESMVA 65 (534)
Q Consensus 41 ~~l~~~~~~~g~~~~A~~~~~~~~~ 65 (534)
..-+..++...+|++|+.++++...
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3445667777888888887776543
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.04 E-value=56 Score=25.08 Aligned_cols=58 Identities=12% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHH
Q 047017 456 NESIEVLAAMFEKGCKP-NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISRDTFKR 513 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 513 (534)
+.+.++|..|...|+-. -...|...+..+...|++.+|.++|+..++.+..|.+.+..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 33677899999877654 36677788889999999999999999999998877755443
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.25 E-value=67 Score=30.22 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYG--EPD---VFAYNALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...++.+++.|...+.++.|..+..+..--. .++ ..-+..++..+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455666666666666666666666553110 011 112333455555666666666666665543
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=58.34 E-value=58 Score=26.50 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047017 422 EAVGLLVDMESTRFRPT-VISYNIIILGFCKTRRINESIEVLAAMFEKGCKP 472 (534)
Q Consensus 422 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 472 (534)
.+..+|..|...|+-.. ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34444544444443332 2233444444444555555555555555544443
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.01 E-value=60 Score=26.83 Aligned_cols=90 Identities=9% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047017 375 MFSALWSSGDKIRALGMISEMLSK--GIEP----DEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILG 448 (534)
Q Consensus 375 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 448 (534)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++. . .+........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 356667777777777777765532 1121 11111222222222222223333333442 2 3344444555566
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 047017 449 FCKTRRINESIEVLAAMFE 467 (534)
Q Consensus 449 ~~~~g~~~~A~~~~~~~~~ 467 (534)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6667777777777666543
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=53.20 E-value=1.2e+02 Score=27.93 Aligned_cols=110 Identities=13% Similarity=-0.004 Sum_probs=69.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047017 50 AGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVL 129 (534)
Q Consensus 50 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 129 (534)
..+.+-|+++ +.+.|.+--...|..-...+...|++++|.++.......--.++.+.+.+-..=..-|+..-.+.+|
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 3677777766 4566767777788888899999999999998877766544555666555444434445666666777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHH
Q 047017 130 DRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKV 163 (534)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 163 (534)
..+.+.| ..+..--..+++.-...|+.+-..+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 7766665 33443333444555555554443333
No 285
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.96 E-value=1.4e+02 Score=30.91 Aligned_cols=51 Identities=8% Similarity=0.055 Sum_probs=33.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 147 MIGSLCSRGMIESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 147 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
++..+...|.++-+.++.. . .+.++..-..++.+|...|++++|...|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~----~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG----W-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG----G-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHh----h-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555554443222 1 2445555567888899999999999999987
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=49.19 E-value=84 Score=24.03 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=33.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC--CHhhHHHHHH------HHHhcCCHhHHHHHHHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKP--DVVMCTKLIK------KFFQERKSNKAVRVMEILEK 100 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 100 (534)
+++.|+|=+|-++++.+-.....+ ....|..|++ ...+.|+..-|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555688888888888877654344 3445555555 22445666666666666554
No 287
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=49.03 E-value=62 Score=29.82 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=77.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGF 116 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (534)
+..|..-+..++..|+|++|..+--...+ |+-.+..+.+.+-.+-..-|+..--+.+|..+...+..+..--..+++.-
T Consensus 361 d~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~Ln~~ESlEl~r~v 439 (494)
T 1bpo_A 361 EELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQLNKYESLELCRPV 439 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCccchHHhhHHhHHH
Confidence 34466777889999999999988766543 44556777666655555567777788888888888877766666667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 047017 117 CKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQL 167 (534)
Q Consensus 117 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 167 (534)
..+|+.+-..+.+.+ ..+..+...-. ++ +..+..-|+.+|.+.
T Consensus 440 L~q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 440 LQQGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHTTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred HhccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 777776655554433 22233322211 11 333555666666554
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=49.01 E-value=37 Score=27.61 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 457 ESIEVLAAMFEKGCKP-NETTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 457 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.+.++|..|...|+-. -...|...+..+...|++.+|..+|+..++.+..+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3445555555544332 234444555555555555555555555555554443
No 289
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=48.54 E-value=16 Score=21.81 Aligned_cols=11 Identities=27% Similarity=0.235 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 047017 158 ESAFKVFDQLL 168 (534)
Q Consensus 158 ~~a~~~~~~~~ 168 (534)
++|..+-+.+.
T Consensus 23 ~EA~tIA~~L~ 33 (61)
T 3ph0_C 23 QEAASIADWLA 33 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=45.93 E-value=1.1e+02 Score=25.43 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHhHHHHHHH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVV---MCTKLIKKFFQERKSNKAVRVME 96 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~ 96 (534)
.+...++.|+.+....++ +.+..++.. .-...+...+..|+.+-+..+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 60 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 455566777775544444 444332211 11123444455676654444443
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.55 E-value=1.4e+02 Score=26.64 Aligned_cols=231 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhc
Q 047017 233 NMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKD 312 (534)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (534)
..++.-|...++.++|...++++..-...|.......-...=.+...-+.+..++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 047017 313 GR--------LDLAIEFLDYMISDGCLPDIVNYNTILAAFCKNGNADQALEIFEKLSDVGCPPNVSSYNTMFSALWSSGD 384 (534)
Q Consensus 313 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (534)
.+ ++..-.++.+++..++-|-.......... .-..+.++++.+... -........+-..+...+.
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~--L~~~~~~~~~~~~WG~g~~ 209 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVL--LSMSKGGKRKDSVWGSGGG 209 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHH--HTC---------CCCCCCS
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHH--HhccchHHHHHHhcCCCCC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--ChHHHHHHH
Q 047017 385 KIRALGMISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR--RINESIEVL 462 (534)
Q Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~ 462 (534)
+....++-+++. .++.-|...|+.++|...++++...... ...+...+..++-+.+ ..+....++
T Consensus 210 ~~~veelkkki~------------~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL 276 (358)
T 3eiq_C 210 QQPVNHLVKEID------------MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLL 276 (358)
T ss_dssp SSCHHHHHHHHH------------HHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CccHHHHHHHHH------------HHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH
Q 047017 463 AAMFEKGCKPNETTYVLLIEGI 484 (534)
Q Consensus 463 ~~~~~~~~~~~~~~~~~l~~~~ 484 (534)
..+.+.|+-+.......+.+.+
T Consensus 277 ~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 277 KSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHH
No 292
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=41.87 E-value=1.7e+02 Score=25.38 Aligned_cols=49 Identities=8% Similarity=-0.018 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 047017 123 ELANKVLDRLRSRGFSPD--VVTYNIMIGSLCSRGMIESAFKVFDQLLRDN 171 (534)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 171 (534)
.+..++-.-+..-+++|. .-+....+....+.+++..|..+-+++++.+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344444444443333432 2234455666778888888888888888765
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.63 E-value=2.1e+02 Score=29.78 Aligned_cols=108 Identities=11% Similarity=0.022 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------------------
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSP------------------ 139 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------------ 139 (534)
++..+...|.++-|.++... -+.++..-..++.+|...|++++|.++|+++.. |+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCcc
Confidence 45555666666555443322 234444455667777777777777777766431 1110
Q ss_pred -----ChhhHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcC
Q 047017 140 -----DVVTYNIMIGSLCSRGMIESAFKVFDQLLRDNCKPTV----ITYTILIQATMLEG 190 (534)
Q Consensus 140 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 190 (534)
...-|..++..+-+.+.++-+.++-+.+++.--+.+. ..|..+.++++..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124678889999999999999999888865322233 25666777666544
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.46 E-value=1.2e+02 Score=23.16 Aligned_cols=53 Identities=6% Similarity=-0.105 Sum_probs=32.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHccCCHHHHHHHHHHHHH
Q 047017 450 CKTRRINESIEVLAAMFEKGCKP--NETTYVLLIE------GIGYGGWRAEAMELANALVS 502 (534)
Q Consensus 450 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 502 (534)
...|++-+|-++++..=.....+ ....|..||+ ...+.|+..-|..++.++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34477777777777765543344 4455555555 12356778888888877766
No 295
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=39.65 E-value=90 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 111 ALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 111 ~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
..+..|.+.|.+++|.+++++....
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC
Confidence 3345566777777777777776654
No 296
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=39.43 E-value=1.2e+02 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=46.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHc
Q 047017 36 KETQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQ-ERKSNKAVRVMEILEKY 101 (534)
Q Consensus 36 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 101 (534)
+...+..+++..-+.+++++.......+...+...+.+-.+.+-.+|-. -|....+.+++..+.+.
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqk 73 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQK 73 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 3455566677788999999999999999998888888877776666622 24445566666555443
No 297
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=37.79 E-value=1.8e+02 Score=24.37 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcC--CCChhhHHH
Q 047017 37 ETQFMKLIKRSFRAGKFDESLYFIESMVANG--CKPDVVMCTKLIKKFFQ-ERKSNKAVRVMEILEKYG--EPDVFAYNA 111 (534)
Q Consensus 37 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 111 (534)
...+..+++..-+.++|++....+.++...+ ...+.+-.+.+-.+|-. -|....+.+++..+.+.. ..+ .....
T Consensus 8 re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~-~~~~~ 86 (260)
T 1o9d_A 8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN-EEHVN 86 (260)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc-HHHHH
Confidence 3455566777788999999999999999876 67777776666665521 233445566666554432 122 22333
Q ss_pred HHHHHHhcC--CH----HHHHHHHHHHH-hCCCCCChhhHH-HHHHHHH------cCCC-----HHHHHHHHHHHHhC--
Q 047017 112 LISGFCKAN--QI----ELANKVLDRLR-SRGFSPDVVTYN-IMIGSLC------SRGM-----IESAFKVFDQLLRD-- 170 (534)
Q Consensus 112 l~~~~~~~g--~~----~~a~~~~~~~~-~~~~~~~~~~~~-~l~~~~~------~~g~-----~~~a~~~~~~~~~~-- 170 (534)
++..|...= .+ +..+.+++..+ .....+...+|. -+-.-|. ..|+ .+.+...|+.+.+.
T Consensus 87 ~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~ 166 (260)
T 1o9d_A 87 SIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIAT 166 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344332210 00 12233333321 010011122222 1111111 1222 24566666665432
Q ss_pred -CCCCCHhhHHHHHHH-----HHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHH
Q 047017 171 -NCKPTVITYTILIQA-----TMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLES 222 (534)
Q Consensus 171 -~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~ 222 (534)
.++|+..+...|+-- |--.++.++|..+-+.. +++|+.-++.+.+
T Consensus 167 ~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~A-------fd~Ai~eld~L~E 217 (260)
T 1o9d_A 167 TELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA-------FDEAIAELDTLGE 217 (260)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH-------HHHHHHHHHHTC-
T ss_pred hcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-------HHHHHHhhhccCh
Confidence 357766655544432 33468999998887776 5666666655433
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.98 E-value=1e+02 Score=29.03 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCh--hhH-HHHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 404 EITYNSLISCLCRDGMVDEAVGLLVDMESTRF-RPTV--ISY-NIIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 404 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
...++.+++.|...+.++.|..+..+..--.. .++. ..| ..++..+...+++.+|.+.+..+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788899999999999999999988752100 1111 112 13456667789999999998888775
No 299
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.93 E-value=57 Score=19.84 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHcCCCchHHH
Q 047017 489 WRAEAMELANALVSMHAISRDTF 511 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~~~~ 511 (534)
|++.|...|.++...+..+++++
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHHh
Confidence 67777777777776666666554
No 300
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=33.70 E-value=21 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 047017 444 IIILGFCKTRRINESIEVLAAMFEK 468 (534)
Q Consensus 444 ~l~~~~~~~g~~~~A~~~~~~~~~~ 468 (534)
..+..|.+.|.+++|.+++++..+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3455677788888888888776553
No 301
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.59 E-value=1.9e+02 Score=23.19 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC-----HHHHHHHHHHHHhCCC
Q 047017 106 VFAYNALISGFCK---ANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM-----IESAFKVFDQLLRDNC 172 (534)
Q Consensus 106 ~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 172 (534)
...+..+++++.+ -.+++.|+-.+-+|++.|-.|.-..-..++.+.-.-|. ...|...++.....|.
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3344455555544 46788888888888888766655555555555444443 2344455555555553
No 302
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.48 E-value=2.5e+02 Score=24.43 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCch
Q 047017 456 NESIEVLAAMFEKGCKPNE--TTYVLLIEGIGYGGWRAEAMELANALVSMHAISR 508 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 508 (534)
.+..++-.-+..-.++|.. -++...+....+.+++..|..+.+++++.+|..+
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 4444444444444455432 2334555566677778888888888887777543
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.89 E-value=1.7e+02 Score=22.04 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPT---VISYNIIILGFCKTRR--INESIEVLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 471 (534)
....++.-|...|+.++|...++++. .|. ..+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~----~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC----CCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45677888888899999999988874 221 1222233333333222 33455666666655544
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.79 E-value=1.6e+02 Score=21.79 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=16.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 451 KTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 451 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
..+..-.|.++++.+.+.++..+..|....++.+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344445555555544444444444444444444433
No 305
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.53 E-value=1.1e+02 Score=19.64 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCchHHHHHHHhh
Q 047017 480 LIEGIGYGGWRAEAMELANALVSMHAISRDTFKRLNRT 517 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 517 (534)
++..+...|+.++|...|-+++..-+.+.+.+.-+-+.
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~t 60 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQT 60 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 44555566666666666666666666666555544433
No 306
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.31 E-value=2.5e+02 Score=30.23 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcC-------------------------------
Q 047017 72 VVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKAN------------------------------- 120 (534)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------------------- 120 (534)
.+....+--.+...-+.+++.++|+++.+..|....++...+..+-...
T Consensus 1107 ~e~~rd~~~~~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1186 (1354)
T 3lxu_X 1107 AESFRDFQCSQIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQ 1186 (1354)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHSSCCCCHHHHHHTTSCCCSSCTTHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccchhh
Q ss_pred -----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 047017 121 -----QIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGMI-ESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDK 194 (534)
Q Consensus 121 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 194 (534)
..++.+++-+.++ +..--..|+..|....+. .+|.++-.+|.+.. ..|+.++++.|.-=.
T Consensus 1187 ~~~~~~~~~ii~~ad~vi------~~id~~~l~~~~g~k~d~~~~a~k~k~~m~~~k--------~~l~~al~~k~~ala 1252 (1354)
T 3lxu_X 1187 KKVRSALERIVKLADKVI------QETDSEALLSYYGLKNDTRADAAKIKTNMDKQK--------NTLIEALSKKGIAVA 1252 (1354)
T ss_dssp HHHHHHHHHHHHHHHHTT------CHHHHTTTSTTCCSTHHHHCSSSCCHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH------HhcCHHHHHHHhcCCCCCchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047017 195 AMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSL 274 (534)
Q Consensus 195 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (534)
-+.++. .......++-.+.|.++.+.--..|.......+.....++++..|++++.++.+. +|+...|..++..+
T Consensus 1253 ~~~~~~---~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~ 1327 (1354)
T 3lxu_X 1253 KLAVLD---DCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAIN 1327 (1354)
T ss_dssp HHHHHH---TCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred HHHhhh---hhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHhcH
Q 047017 275 CRDGKTEDAVDVLRAAKEKGLTPDAYSY 302 (534)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (534)
...| |+....+.+.+.-...+++-..|
T Consensus 1328 ~~l~-w~h~~~~~~~~~~~~~p~~~~~f 1354 (1354)
T 3lxu_X 1328 GALG-HEHIRTVINRMMITAFPSSFRLF 1354 (1354)
T ss_dssp HHHS-CHHHHHHHHHHHHHHSCSSCCCC
T ss_pred HHcC-CHHHHHHHHhhhhhhCcccCCCC
No 307
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.27 E-value=1.1e+02 Score=22.27 Aligned_cols=45 Identities=4% Similarity=0.022 Sum_probs=27.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK 87 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (534)
++..+...+..-.|.++++.+.+.+...+..+....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444555556666777777777666555566666666666665553
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.42 E-value=1.8e+02 Score=21.78 Aligned_cols=41 Identities=5% Similarity=-0.001 Sum_probs=18.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 448 GFCKTRRINESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 448 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
.+...+..-.|.++++.+.+.++..+..|....++.+...|
T Consensus 35 ~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 35 VLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333444445555555554444444444444444444443
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.27 E-value=1.8e+02 Score=21.87 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCC
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK--TEDAVDVLRAAKEKGLT 296 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 296 (534)
...++.-|...|+.++|...++++..-... ...+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 455677788888999999888887421000 11122233333333222 34566677776666544
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.38 E-value=1.5e+02 Score=22.15 Aligned_cols=34 Identities=9% Similarity=-0.082 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 047017 420 VDEAVGLLVDMESTRFRPTVISYNIIILGFCKTR 453 (534)
Q Consensus 420 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 453 (534)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3345555555544433333333333333333333
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.37 E-value=2.2e+02 Score=22.58 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC
Q 047017 417 DGMVDEAVGLLVDMESTRFRP 437 (534)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~ 437 (534)
..+++.|+-++.+|++.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 344555555555555444333
No 312
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.29 E-value=1.3e+02 Score=22.38 Aligned_cols=13 Identities=15% Similarity=0.205 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhC
Q 047017 421 DEAVGLLVDMEST 433 (534)
Q Consensus 421 ~~A~~~~~~~~~~ 433 (534)
-.|.++++.+.+.
T Consensus 34 ~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 34 ATPDDILGEVRKT 46 (145)
T ss_dssp BCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhh
Confidence 3444444444443
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.27 E-value=1.7e+02 Score=21.22 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 047017 406 TYNSLISCLCRDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRR--INESIEVLAAMFEKGCK 471 (534)
Q Consensus 406 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~ 471 (534)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+....++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3566777888889999998888887411000 11122233333333322 24455566666555543
No 314
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.27 E-value=1e+02 Score=22.78 Aligned_cols=45 Identities=4% Similarity=0.064 Sum_probs=26.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERK 87 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (534)
++..+...++.-.|.++++.+.+.+...+..+....+..+...|-
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 444444555566677777776666555566666666666655553
No 315
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=26.31 E-value=71 Score=18.49 Aligned_cols=31 Identities=10% Similarity=0.152 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHhhcc
Q 047017 489 WRAEAMELANALVSMHAISRDTFKRLNRTFP 519 (534)
Q Consensus 489 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 519 (534)
|...|+++++++.+.+..++.-+..|-+++.
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL~aLq~VLq 38 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKLASLQQVLQ 38 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4455666666665555555555555555543
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.24 E-value=2.1e+02 Score=21.44 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=6.3
Q ss_pred ChhHHHHHHHHHHHC
Q 047017 279 KTEDAVDVLRAAKEK 293 (534)
Q Consensus 279 ~~~~a~~~~~~~~~~ 293 (534)
..-.|.++++.+.+.
T Consensus 41 ~~~sa~ei~~~l~~~ 55 (150)
T 2xig_A 41 THLSPEEITHSIRQK 55 (150)
T ss_dssp SCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 333444444444433
No 317
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.19 E-value=4.8e+02 Score=25.64 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=14.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 047017 235 LLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~~ 255 (534)
....+.-.|+++.|++.+-..
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~ 320 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF 320 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc
Confidence 344455678888888877643
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.95 E-value=1.7e+02 Score=22.34 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=18.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCCCHhcHHHHHHHHHhcC
Q 047017 270 LISSLCRDGKTEDAVDVLRAAKEK--GLTPDAYSYDPLISAYCKDG 313 (534)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 313 (534)
++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 333334444444455555544443 33333333333344444433
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.53 E-value=2.8e+02 Score=24.37 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 047017 234 MLLRTLLNMGKWEEGEKLMTEM 255 (534)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~~ 255 (534)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 4555566666666666666555
No 320
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=25.46 E-value=1.4e+02 Score=19.24 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047017 456 NESIEVLAAMFEKGCKPNETTYVLLIEGIGYGG 488 (534)
Q Consensus 456 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 488 (534)
-.+.++++.+.+.++..+..|....+..+...|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455555544444444444444444444433
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.06 E-value=1.6e+02 Score=22.50 Aligned_cols=69 Identities=7% Similarity=0.094 Sum_probs=43.4
Q ss_pred HHHHHHHHH-HHhCCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCH
Q 047017 123 ELANKVLDR-LRSRGFSPDVVTYNIMIGSLCSRGMIESAFKVFDQLLRD--NCKPTVITYTILIQATMLEGQT 192 (534)
Q Consensus 123 ~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 192 (534)
+.+.+-+.+ +.+.|+..+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 334443433 4445666543 3455667777777788899999998876 5555666666666666666643
No 322
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.55 E-value=2e+02 Score=20.82 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCC
Q 047017 232 YNMLLRTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGK--TEDAVDVLRAAKEKGLT 296 (534)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 296 (534)
...++.-|...|+.++|...++++..-... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 445677788888999998888887421000 11122233333333322 34566777777666544
No 323
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.28 E-value=2.5e+02 Score=21.69 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=5.0
Q ss_pred hcCCHhHHHHHH
Q 047017 84 QERKSNKAVRVM 95 (534)
Q Consensus 84 ~~~~~~~a~~~~ 95 (534)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444433
No 324
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.27 E-value=3e+02 Score=22.67 Aligned_cols=112 Identities=11% Similarity=0.092 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHc
Q 047017 78 LIKKFFQERKSNKAVRVMEILEKYGEP-DVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDV---VTYNIMIGSLCS 153 (534)
Q Consensus 78 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 153 (534)
.+...+..|+.+....+++.-...+.. +..-+ ..+...+..|+.+- ++.+.+.|..++. ...+ .+...+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 81 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDI----VELLLRHGADPVLRKKNGAT-PFLLAAI 81 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCC-HHHHHHH
Confidence 344456778876666665542221111 22112 23344456677654 4444555554432 2222 2333445
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHH
Q 047017 154 RGMIESAFKVFDQLLRDNCKPTV---ITYTILIQATMLEGQTDKAMKLLD 200 (534)
Q Consensus 154 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 200 (534)
.|+.+-+ +.+.+.|..++. .-.+. +...+..|+.+-...+++
T Consensus 82 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 82 AGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp HTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHHHHHHHHH
Confidence 5665544 444444443332 11222 233345666554444433
No 325
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.15 E-value=1.3e+02 Score=22.06 Aligned_cols=115 Identities=9% Similarity=-0.021 Sum_probs=52.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCC
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGC-KPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 121 (534)
.+...+..|+.+.+..+++. ....+ ..+..-.+ .+.. +..|+.+-+..+++.-...+..+..-...+. ..+..|+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~ 80 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKT-ALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVH-DAARTGF 80 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCC-HHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCc-HHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH-HHHHcCc
Confidence 45556778888887777766 21111 11222222 2333 5567766555555432111122222223333 3345566
Q ss_pred HHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHcCCCHHHHHHHHHH
Q 047017 122 IELANKVLDRLRSRGFSPDV---VTYNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.+-+ +.+.+.|..++. ...+. +...+..|+.+-+.-+++.
T Consensus 81 ~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 81 LDTL----KVLVEHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHH----HHHHHTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT
T ss_pred HHHH----HHHHHcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc
Confidence 5543 344445544432 22223 3334456666655555544
No 326
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.99 E-value=85 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047017 39 QFMKLIKRSFRAGKFDESLYFIESMVA 65 (534)
Q Consensus 39 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 65 (534)
....+.+.|...|+++.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345788899999999999999998765
No 327
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=23.88 E-value=1.7e+02 Score=19.62 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047017 455 INESIEVLAAMFEKGCKPNETTYVLLIEGIG 485 (534)
Q Consensus 455 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 485 (534)
++.|+.+++++... ...++..|...+..+.
T Consensus 10 ~~~A~~YvnkVK~r-F~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNR-FQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HccChHHHHHHHHHHH
Confidence 35566666666653 2235556665555444
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.85 E-value=2.1e+02 Score=20.82 Aligned_cols=12 Identities=42% Similarity=0.412 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHC
Q 047017 282 DAVDVLRAAKEK 293 (534)
Q Consensus 282 ~a~~~~~~~~~~ 293 (534)
.|.++++.+.+.
T Consensus 36 sa~ei~~~l~~~ 47 (136)
T 1mzb_A 36 SAEDVYKALMEA 47 (136)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhh
Confidence 344444444333
No 329
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.78 E-value=1.4e+02 Score=21.82 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHHHcC-CCChhhHHHHHHHHHhcCC
Q 047017 77 KLIKKFFQER-KSNKAVRVMEILEKYG-EPDVFAYNALISGFCKANQ 121 (534)
Q Consensus 77 ~l~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 121 (534)
.++..+...+ ..-.|.++++.+.+.+ ..+..+....+..+...|-
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444444444 4555666666665554 3344444444555555543
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.57 E-value=2.2e+02 Score=21.23 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG 348 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (534)
-.|.++++.+.+.+...+..|....+..+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444333333333333333344333
No 331
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.47 E-value=1.3e+02 Score=21.75 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=13.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 047017 454 RINESIEVLAAMFEKGCKPNETTYVLLIEGIGYG 487 (534)
Q Consensus 454 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (534)
..-.|.++++.+.+.++..+..|....++.+...
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 3334444444444443333443333333334333
No 332
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.27 E-value=3.3e+02 Score=22.80 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHH---cCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHH
Q 047017 456 NESIEVLAAMFE---KGCKPNETTYVLLIEG-----IGYGGWRAEAMELANALVS 502 (534)
Q Consensus 456 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~ 502 (534)
+.|...++.+.+ ..++|...+...|+-- |--.+++++|.++.+++++
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666543 3467765555544432 3357899999888777765
No 333
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=23.26 E-value=1.3e+02 Score=26.59 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047017 391 MISEMLSKGIEPDEITYNSLISCLCRDGMVDEAVGLLVDMESTR 434 (534)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 434 (534)
++..+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 33344444555555555555555555555555666666555443
No 334
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.19 E-value=1.6e+02 Score=19.89 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=7.9
Q ss_pred HHHHHHccCCHHHHHHH
Q 047017 480 LIEGIGYGGWRAEAMEL 496 (534)
Q Consensus 480 l~~~~~~~g~~~~A~~~ 496 (534)
....+.+.|++++|++.
T Consensus 21 rAe~ll~~gkydeAIec 37 (97)
T 2crb_A 21 RADRLLAAGKYEEAISC 37 (97)
T ss_dssp HHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 34444445555555433
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.66 E-value=1.7e+02 Score=24.04 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=35.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHH--hcCCHhHHHHHHHHHH
Q 047017 43 LIKRSFRAGKFDESLYFIESMVANGCKPDVV-------MCTKLIKKFF--QERKSNKAVRVMEILE 99 (534)
Q Consensus 43 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 99 (534)
.+...++.|+.+....+++.+.+.+...+.. -.+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4556778899998888888777765544422 2233333322 5677777777776643
No 336
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.46 E-value=1.9e+02 Score=21.44 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 047017 316 DLAIEFLDYMISDGCLPDIVNYNTILAAFCKNG 348 (534)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 348 (534)
-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444443333333333333333333333
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.35 E-value=2.4e+02 Score=20.86 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 047017 317 LAIEFLDYMIS 327 (534)
Q Consensus 317 ~a~~~~~~~~~ 327 (534)
.|.++++.+.+
T Consensus 39 sa~ei~~~l~~ 49 (145)
T 2fe3_A 39 TADDIYKALEG 49 (145)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHH
Confidence 33334444333
No 338
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.30 E-value=4.9e+02 Score=24.42 Aligned_cols=80 Identities=8% Similarity=-0.128 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHH
Q 047017 38 TQFMKLIKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFC 117 (534)
Q Consensus 38 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (534)
.....+.....-...+..|...|..+.... |.+...|+.++......|+.-+|.-.|-+......|-+.+...+...+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q ss_pred h
Q 047017 118 K 118 (534)
Q Consensus 118 ~ 118 (534)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
No 339
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.08 E-value=78 Score=19.27 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 047017 158 ESAFKVFDQLLRDNCKPTVITYTILIQAT 186 (534)
Q Consensus 158 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 186 (534)
++|.+.|.+|++..-.+...+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666666543344445666666655
No 340
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=21.46 E-value=1.5e+02 Score=18.42 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=5.8
Q ss_pred ChhHHHHHHHHHHHC
Q 047017 52 KFDESLYFIESMVAN 66 (534)
Q Consensus 52 ~~~~A~~~~~~~~~~ 66 (534)
-.+.++..+.++++.
T Consensus 17 AieDaiy~L~~aL~~ 31 (65)
T 2f6m_A 17 ALTDTIEALSRMLHR 31 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 333333333333333
No 341
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.15 E-value=1.5e+02 Score=23.48 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047017 110 NALISGFCKANQIELANKVLDRLRSR 135 (534)
Q Consensus 110 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 135 (534)
...+..|.+.|.+++|.++|++.-..
T Consensus 121 ~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 121 IQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccchHHHHHHHHHHhcC
Confidence 44566788888899998888886654
No 342
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.11 E-value=4.6e+02 Score=23.61 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=33.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCC----------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHh
Q 047017 148 IGSLCSRGMIESAFKVFDQLLRDN----------------CKPTVITYTILIQATMLEGQTDKAMKLLDEM 202 (534)
Q Consensus 148 ~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 202 (534)
+.+.....+.+++.+.++.+...- ......+...++..|...|+.+.|..++++.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455566677777766653210 1122334556677788888888888887765
No 343
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.09 E-value=3.2e+02 Score=21.79 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cc
Q 047017 416 RDGMVDEAVGLLVDMESTRFRPTVISYNIIILGFCKTRRI-----NESIEVLAAMFEKGCKPNETTYVLLIEGIG---YG 487 (534)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 487 (534)
+..+++.|+-++.+|++.| .|....-..++.+.-..|.- ..|...++.....|.+.-...+...+..++ ++
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~LaqaviyLA~aPKS 104 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVVVDLCLSPKS 104 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHSCCC
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCCcc
Confidence 4566777777777777766 54444444444444444431 223344444444565433333322222222 44
Q ss_pred CCHHHHHHHHHHHHHcC
Q 047017 488 GWRAEAMELANALVSMH 504 (534)
Q Consensus 488 g~~~~A~~~~~~~~~~~ 504 (534)
+..-.|.....+.++.+
T Consensus 105 Ns~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 105 NSAYMALDAALADIREG 121 (204)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44445555444444443
No 344
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=20.59 E-value=3.1e+02 Score=21.48 Aligned_cols=198 Identities=11% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCC
Q 047017 77 KLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIELANKVLDRLRSRGFSPDVVTYNIMIGSLCSRGM 156 (534)
Q Consensus 77 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 156 (534)
.+...........++...+-.... .++...-...+..+.+.|..+....+.+.+. .++...-...+.++...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~L~~~L~--~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 6 QFEKAAAPLRADPEKVEMYIKNLQ--DDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp ----------CCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC
T ss_pred ccchhhhHhhcCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHhcccccCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047017 157 IESAFKVFDQLLRDNCKPTVITYTILIQATMLEGQTDKAMKLLDEMGMCKKGMVGQAFQFVRSLESRGCQPDVISYNMLL 236 (534)
Q Consensus 157 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 236 (534)
.+....+.+.+. .++...-...+.++...|+.+....+...+ ..++...-...+
T Consensus 80 ~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l----------------------~d~~~~vr~~a~ 133 (211)
T 3ltm_A 80 ERAVEPLIKALK----DEDGWVRQSAAVALGQIGDERAVEPLIKAL----------------------KDEDWFVRIAAA 133 (211)
T ss_dssp GGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHT----------------------TCSSHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHH----------------------hCCCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHhcHHHHHHHHHhcCC
Q 047017 237 RTLLNMGKWEEGEKLMTEMISRGLEPNVVTYSILISSLCRDGKTEDAVDVLRAAKEKGLTPDAYSYDPLISAYCKDGR 314 (534)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (534)
.++...++.+....+...+. .++...-...+.++...+..+....+...+... +...-...+.++...+.
T Consensus 134 ~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 134 FALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGGERVRAAMEKLAETG----TGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC----CHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC----CHHHHHHHHHHHHhcCC
No 345
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.58 E-value=2e+02 Score=19.49 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH-----HhcCCHhHHHHHHHHHH
Q 047017 47 SFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKF-----FQERKSNKAVRVMEILE 99 (534)
Q Consensus 47 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 99 (534)
++..|+|=+|-+++|.+-.....+....|..+++.. .+.|+. |..++.+..
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 455588888888888776654223344455554422 234444 555554443
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.18 E-value=2.2e+02 Score=19.52 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=10.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047017 390 GMISEMLSKGIEPDEITYNSLISCLC 415 (534)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 415 (534)
.+.++....|+.|+..+...++..|.
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33333333344444444444433333
No 347
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.02 E-value=3.1e+02 Score=21.28 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCChhhHHHHHHHHHhcCCHH
Q 047017 44 IKRSFRAGKFDESLYFIESMVANGCKPDVVMCTKLIKKFFQERKSNKAVRVMEILEKYGEPDVFAYNALISGFCKANQIE 123 (534)
Q Consensus 44 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 123 (534)
|..+.+-.+++.+.-+-.-+. +-.++--..+.-.+.-.|.+..++-++.. .....+..--.-+|-+..++.
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L~----~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYk 79 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACLL----PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYK 79 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--------CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhcccccHHHHHHHHHc----cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhCCCCCChhh-----------------HHHHHHHHHcCCCHHHHHHHHHH
Q 047017 124 LANKVLDRLRSRGFSPDVVT-----------------YNIMIGSLCSRGMIESAFKVFDQ 166 (534)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~ 166 (534)
.|+..++.+....+..|+.+ ++.+...+...|+.++|+..+..
T Consensus 80 kA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 80 KAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Done!