BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047018
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/308 (34%), Positives = 151/308 (49%), Gaps = 31/308 (10%)
Query: 77 VRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPK 136
V +DG GD++T+ +AV + P + R V+ + G Y E + V +K + GD
Sbjct: 7 VAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATT 66
Query: 137 I-----VFNGTALHFGTVNSATVA-VESDYXXXXXXXXXXSAPMPDGKRLGAQAVAMRIS 190
I V +G+ T SAT+A V + + P D QAVA+R+
Sbjct: 67 ITGSLNVVDGST----TFRSATLAAVGQGFILQDICIQNTAGPAKD------QAVALRVG 116
Query: 191 GDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANG-- 248
D + + C+ YQDTL R F++D Y+ GTVDFIFGN ++ + +V+ G
Sbjct: 117 ADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY 176
Query: 249 -LGVITAQAREQVNDDSGFTFVHCNITGSGD---------TYLGRAWKERPRVLFAYTYM 298
++TAQ R N +G + CNI S D TYLGR WKE R + +Y+
Sbjct: 177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYL 236
Query: 299 GTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVK---FAKLLSEAEAKPFLSMT 355
G LIN GWA + + KT+YYGE+ GPGA +S RVK + + A+A PF
Sbjct: 237 GGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAK 296
Query: 356 YLNGNKWL 363
+ G WL
Sbjct: 297 LIQGGSWL 304
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 150/309 (48%), Gaps = 29/309 (9%)
Query: 75 ITVRKDGRGDFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDP--- 131
+ V DG GD+KTV++AV + P + R V++I G Y E + V + K + F GD
Sbjct: 9 VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTS 68
Query: 132 --FDMPKIVFNGTALHFGTVNSATVAVESDYXXXXXXXXXXSAPMPDGKRLGAQAVAMRI 189
K V +G+ T NSATVA +A QAVA+R+
Sbjct: 69 TIITASKNVQDGST----TFNSATVAAVGAGFLARDITFQNTAGAAK-----HQAVALRV 119
Query: 190 SGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGL 249
D +AF+ C + YQD+L R FF +C+I GTVDFIFGN + I + G
Sbjct: 120 GSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGS 179
Query: 250 G---VITAQAREQVNDDSGFTFVHCNITGSGD---------TYLGRAWKERPRVLFAYTY 297
G ++TAQ R N ++G I + D TYLGR WKE R + +
Sbjct: 180 GQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSS 239
Query: 298 MGTLINSQGWAAGEHSQSHKTVYYGEYKCMGPGASSSGRVK---FAKLLSEAEAKPFLSM 354
+ +IN GW + + + T+YYGEY+ G GA++SGRV F + S EA+ F
Sbjct: 240 ITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPG 299
Query: 355 TYLNGNKWL 363
+++ G WL
Sbjct: 300 SFIAGGSWL 308
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 143/339 (42%), Gaps = 70/339 (20%)
Query: 85 FKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIV------ 138
FKT+ DA+ S P+G+T V++ I G Y E++T+ R+ + G+ + I
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74
Query: 139 -FNGTALHFGTVNSATVAVES--------------DYXXXXXXXXXXSAPMPDGKRLGAQ 183
+GT S+T+ + + D+ S+ + D Q
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKD-----TQ 129
Query: 184 AVAMRI--SGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTT 241
AVA+ + SGD+A F + +GYQDTL GR FF DC I GTVDFIFG+G +L+
Sbjct: 130 AVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCD 189
Query: 242 IVS-------VANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTY------LGRAWKER 288
+VS N G +TA + +N G + + D+ LGR W
Sbjct: 190 LVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 289 ----------PRVLFAYTYMGTLINSQ--GW-AAGEHSQSHKTVYYG-------EYKCMG 328
P + ++ T +++ GW ++ T+++ EYK G
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308
Query: 329 PGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLP 367
GA+ S K + L++A+A + L W LP
Sbjct: 309 AGATVS---KDRRQLTDAQAAEYTQSKVL--GDWTPTLP 342
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 143/339 (42%), Gaps = 70/339 (20%)
Query: 85 FKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIV------ 138
FKT+ DA+ S P+G+T V++ I G Y E++T+ R+ + G+ + I
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74
Query: 139 -FNGTALHFGTVNSATVAVES--------------DYXXXXXXXXXXSAPMPDGKRLGAQ 183
+GT S+T+ + + D+ S+ + D Q
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKD-----TQ 129
Query: 184 AVAMRI--SGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTT 241
AVA+ + SGD+A F + +GYQDTL GR FF DC I GTVDFIFG+G +L+
Sbjct: 130 AVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCD 189
Query: 242 IVS-------VANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTY------LGRAWKER 288
+VS N G +TA + +N G + + D+ LGR W
Sbjct: 190 LVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 289 ----------PRVLFAYTYMGTLINSQ--GW-AAGEHSQSHKTVYYG-------EYKCMG 328
P + ++ T +++ GW ++ T+++ EYK G
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308
Query: 329 PGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLP 367
GA+ S K + L++A+A + L W LP
Sbjct: 309 AGAAVS---KDRRQLTDAQAAEYTQSKVL--GDWTPTLP 342
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 142/339 (41%), Gaps = 70/339 (20%)
Query: 85 FKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIV------ 138
FKT+ DA+ S P+G+T V++ I G Y E++T+ R+ + G+ + I
Sbjct: 18 FKTIADAIASAPAGSTPFVIL-IKNGVYNERLTITRNN--LHLKGESRNGAVIAAATAAG 74
Query: 139 -FNGTALHFGTVNSATVAVES--------------DYXXXXXXXXXXSAPMPDGKRLGAQ 183
+GT S+T+ + + D+ S+ + D Q
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKD-----TQ 129
Query: 184 AVAMRI--SGDKAAFHNCKFIGYQDTLCDDKGRHFFKDCYIQGTVDFIFGNGKSLYLRTT 241
AVA+ + SGD+A F + +GYQ TL GR FF DC I GTVDFIFG+G +L+
Sbjct: 130 AVALYVTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCD 189
Query: 242 IVS-------VANGLGVITAQAREQVNDDSGFTFVHCNITGSGDTY------LGRAWKER 288
+VS N G +TA + +N G + + D+ LGR W
Sbjct: 190 LVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPT 248
Query: 289 ----------PRVLFAYTYMGTLINSQ--GW-AAGEHSQSHKTVYYG-------EYKCMG 328
P + ++ T +++ GW ++ T+++ EYK G
Sbjct: 249 TTFSDGRYADPNAIGQTVFLNTSMDNHIYGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYG 308
Query: 329 PGASSSGRVKFAKLLSEAEAKPFLSMTYLNGNKWLLPLP 367
GA+ S K + L++A+A + L W LP
Sbjct: 309 AGATVS---KDRRQLTDAQAAEYTQSKVL--GDWTPTLP 342
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 133/324 (41%), Gaps = 59/324 (18%)
Query: 84 DFKTVTDAVKSIPSGNTRRVVVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKI------ 137
+F ++ A+KS P +T ++ + G Y E++ V RS VT G+ D I
Sbjct: 43 EFSSINAALKSAPKDDTPFIIF-LKNGVYTERLEVARSH--VTLKGENRDGTVIGANTAA 99
Query: 138 -VFNGTALHFGTVNSATVAVESDYXXXXXXXXXXSAPMPDGKRLG---------AQAVAM 187
+ N +GT S+TV V + P K+ QAVA+
Sbjct: 100 GMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVAL 159
Query: 188 RIS--GDKAAFHNCKFIGYQDTLCDDKG-RHFFKDCYIQGTVDFIFGNGKSLYLRTTIVS 244
++ DKA F K GYQDTL G R +F DC I G VDFIFG+G +++ IV+
Sbjct: 160 LLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVA 219
Query: 245 -----VANGLGVITAQAREQVNDDSGFTFVHCNIT-----GSGDTYLGRAWKER------ 288
+ G ITA + G F++ +T + LGR W
Sbjct: 220 RDRSDIEPPYGYITAPS-TLTTSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTFADG 278
Query: 289 ----PRVLFAYTYMGTLINSQ--GW--AAGEHSQSHKTVYYG------EYKCMGPGAS-S 333
P + ++ T ++ GW +G+ Q K +Y E GPGA+ +
Sbjct: 279 RYADPAAIGQSVFINTTMDDHIYGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGAAIN 338
Query: 334 SGRVKFAKLLSEAEAKPF-LSMTY 356
GR + LS + K F L M +
Sbjct: 339 EGR----RQLSAEQLKAFTLPMIF 358
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 184 AVAMRISGDKAAFHNCKFIGYQDTL------------CDDKGRHFFKDCYIQGTVDFIFG 231
AVA+R GD+ +N +G Q+T + + R + YI+G VD + G
Sbjct: 225 AVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSG 284
Query: 232 NGKSLYLRT 240
G ++ T
Sbjct: 285 RGAVVFDNT 293
>pdb|2VXT|L Chain L, Crystal Structure Of Human Il-18 Complexed To Murine
Reference Antibody 125-2h Fab
pdb|2VXU|L Chain L, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
pdb|2VXU|M Chain M, Crystal Structure Of Murine Reference Antibody 125-2h Fab
Fragment
Length = 214
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%)
Query: 44 EFTERKAQLAQGKNDTVVDHVLAAAEDGFRVITVRKDGRGDFKTVTDAVKSIPSGNTRRV 103
+ T+ + L+ + V A+ + G ++ ++++ G FK + A S+ SG +R
Sbjct: 3 QMTQSPSSLSASLGERVSLTCRASQDIGSKLYWLQQEPDGTFKRLIYATSSLDSGVPKRF 62
Query: 104 VVKIGGGEYWEKITVERSKDFVTFFGDPFDMPKIVFNG 141
G +Y I+ S+DFV ++ + F G
Sbjct: 63 SGSRSGSDYSLTISSLESEDFVDYYCLQYASSPYTFGG 100
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 230 FGNGKSLYLRTTIVSVANGLGVITA 254
+G G SLYLR ++ V + +GV TA
Sbjct: 136 YGTGGSLYLRPFVIGVGDNIGVRTA 160
>pdb|2F2L|A Chain A, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 263 DSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYG 322
D + F+ I G G+ Y+GR W + MG +N+ + SQS Y G
Sbjct: 62 DIAYNFL---IGGDGNVYVGRGWNK----------MGAHMNNINY----DSQSLSFAYIG 104
Query: 323 EYKCMGPGASSSGRVKFAKLLSEAEAK 349
+K + P A ++ +LL E K
Sbjct: 105 SFKTIQPSAK---QLSVTRLLLERGVK 128
>pdb|1Z6I|A Chain A, Crystal Structure Of The Ectodomain Of Drosophila
Transmembrane Receptor Pgrp-Lca
Length = 167
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 263 DSGFTFVHCNITGSGDTYLGRAWKERPRVLFAYTYMGTLINSQGWAAGEHSQSHKTVYYG 322
D + F+ I G G+ Y+GR W + MG +N+ + SQS Y G
Sbjct: 62 DIAYNFL---IGGDGNVYVGRGWNK----------MGAHMNNINY----DSQSLSFAYIG 104
Query: 323 EYKCMGPGASSSGRVKFAKLLSEAEAK 349
+K + P A ++ +LL E K
Sbjct: 105 SFKTIQPSAK---QLSVTRLLLERGVK 128
>pdb|3CVJ|A Chain A, Crystal Structure Of A Putative Phosphoheptose Isomerase
(Bh3325) From Bacillus Halodurans C-125 At 2.00 A
Resolution
pdb|3CVJ|B Chain B, Crystal Structure Of A Putative Phosphoheptose Isomerase
(Bh3325) From Bacillus Halodurans C-125 At 2.00 A
Resolution
pdb|3CVJ|C Chain C, Crystal Structure Of A Putative Phosphoheptose Isomerase
(Bh3325) From Bacillus Halodurans C-125 At 2.00 A
Resolution
pdb|3CVJ|D Chain D, Crystal Structure Of A Putative Phosphoheptose Isomerase
(Bh3325) From Bacillus Halodurans C-125 At 2.00 A
Resolution
Length = 243
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 212 KGRHFFKDCYIQGTVDFIFGNGKSLYLRTTIVSVANGLGVITA 254
KG H + G ++FG+G S + I + A GL ++TA
Sbjct: 30 KGAHLVSEAVXNGGRFYVFGSGHSHXIAEEIYNRAGGLALVTA 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,267,223
Number of Sequences: 62578
Number of extensions: 472369
Number of successful extensions: 1200
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 21
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)