BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047019
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 6 YYILASTHLFINACQLQRDPRIWEEQCKVQPETFLT 41
+YI +F+N Q+ DP +WE+ + +PE FLT
Sbjct: 375 FYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLT 410
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 4 RSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDID 47
+ +YI +F+N Q+ D ++W + PE FLT ID
Sbjct: 370 KGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFLTPDGAID 413
>pdb|1IZO|A Chain A, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|B Chain B, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|1IZO|C Chain C, Cytochrome P450 Bs Beta Complexed With Fatty Acid
pdb|2ZQX|A Chain A, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|B Chain B, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQX|C Chain C, Cytochrome P450bsbeta Cocrystallized With Heptanoic Acid
pdb|2ZQJ|A Chain A, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|B Chain B, Substrate-Free Form Of Cytochrome P450bsbeta
pdb|2ZQJ|C Chain C, Substrate-Free Form Of Cytochrome P450bsbeta
Length = 417
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 12 THLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGGGMCSGVSFCP 71
T + ++ DPR+W+ + +PE F R +++ F+++ +GGG G CP
Sbjct: 312 TSVLLDLYGTNHDPRLWDHPDEFRPERFAEREENL------FDMIPQGGGHAEKGHR-CP 364
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 7 YILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKD 45
+I + I + L RDP+ W E K PE F ++KD
Sbjct: 365 FIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD 403
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 7 YILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKD 45
+I + I + L RDP+ W E K PE F ++KD
Sbjct: 366 FIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD 404
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 7 YILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKD 45
+I + I + L RDP+ W E K PE F ++KD
Sbjct: 367 FIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD 405
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 19/105 (18%)
Query: 6 YYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTR----HKDIDVRGQHFELLSRGGG 61
Y+I T +F+N + DP W P FL + +KD+ R F + G
Sbjct: 372 YHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSV----GK 427
Query: 62 GMCSG-----------VSFCPPSFDFATPSNKPLVMGEGLRLTVK 95
C G +S DF N+P M LT+K
Sbjct: 428 RRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGLTIK 472
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 71 PPSFDFATPSNKPLVMGEG 89
PP+ F TP PLV GEG
Sbjct: 85 PPTVRFVTPVYSPLVTGEG 103
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 3 TRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFL 40
+ + I T L N + +D +WE+ + PE FL
Sbjct: 362 VQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFL 399
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 3 TRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFL 40
+ + I T L N + +D +WE+ + PE FL
Sbjct: 362 VQGFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFL 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,146,851
Number of Sequences: 62578
Number of extensions: 115251
Number of successful extensions: 164
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 12
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)