Query 047019
Match_columns 114
No_of_seqs 191 out of 1354
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 99.9 2.3E-28 4.9E-33 180.6 6.4 102 2-108 382-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 99.9 2.4E-28 5.3E-33 181.0 6.3 103 1-108 374-488 (489)
3 PLN02394 trans-cinnamate 4-mon 99.9 6.7E-28 1.5E-32 179.0 7.0 107 2-108 382-502 (503)
4 PLN02971 tryptophan N-hydroxyl 99.9 5E-28 1.1E-32 181.5 5.6 109 2-111 416-537 (543)
5 PLN03234 cytochrome P450 83B1; 99.9 1.8E-27 3.8E-32 176.6 6.5 107 2-108 377-499 (499)
6 PLN02183 ferulate 5-hydroxylas 99.9 5E-27 1.1E-31 175.1 6.8 107 2-109 392-513 (516)
7 PLN02169 fatty acid (omega-1)- 99.9 6.4E-27 1.4E-31 174.1 6.6 103 3-108 385-500 (500)
8 PLN00110 flavonoid 3',5'-hydro 99.9 5.1E-27 1.1E-31 174.8 6.1 107 2-108 378-497 (504)
9 PTZ00404 cytochrome P450; Prov 99.9 5.1E-27 1.1E-31 173.5 6.0 98 2-107 372-482 (482)
10 PLN00168 Cytochrome P450; Prov 99.9 8.4E-27 1.8E-31 174.0 6.9 108 1-108 395-517 (519)
11 KOG0157 Cytochrome P450 CYP4/C 99.9 6.2E-27 1.3E-31 174.2 5.6 103 2-108 380-496 (497)
12 PLN02738 carotene beta-ring hy 99.9 2.1E-26 4.6E-31 175.4 7.7 107 2-110 478-597 (633)
13 PLN03195 fatty acid omega-hydr 99.9 1.8E-26 4E-31 171.9 6.5 102 3-108 402-516 (516)
14 PLN02966 cytochrome P450 83A1 99.9 2.9E-26 6.4E-31 170.4 6.3 103 2-106 380-498 (502)
15 PLN02290 cytokinin trans-hydro 99.9 3.1E-26 6.8E-31 170.6 6.0 101 2-109 403-516 (516)
16 PLN02936 epsilon-ring hydroxyl 99.9 8.5E-26 1.8E-30 167.6 8.0 111 2-114 366-488 (489)
17 PLN02655 ent-kaurene oxidase 99.9 8.3E-26 1.8E-30 166.7 6.7 105 1-109 349-465 (466)
18 PLN02687 flavonoid 3'-monooxyg 99.9 7.4E-26 1.6E-30 168.8 6.4 107 2-108 386-509 (517)
19 PLN02426 cytochrome P450, fami 99.9 7.2E-26 1.6E-30 168.6 6.3 103 4-108 385-500 (502)
20 PLN03141 3-epi-6-deoxocathaste 99.9 4.9E-26 1.1E-30 167.3 5.0 97 1-108 342-450 (452)
21 PLN02500 cytochrome P450 90B1 99.9 7.8E-26 1.7E-30 167.7 6.0 102 1-106 371-488 (490)
22 PF00067 p450: Cytochrome P450 99.9 1.8E-26 3.9E-31 166.3 2.6 99 2-103 351-462 (463)
23 PLN03112 cytochrome P450 famil 99.9 1.2E-25 2.6E-30 167.5 7.0 110 2-111 385-511 (514)
24 PLN03018 homomethionine N-hydr 99.9 2.8E-25 6.1E-30 166.5 6.7 107 2-109 403-525 (534)
25 PLN02774 brassinosteroid-6-oxi 99.9 1.5E-25 3.3E-30 165.2 5.0 97 1-106 354-462 (463)
26 KOG0159 Cytochrome P450 CYP11/ 99.9 1.9E-25 4.1E-30 163.9 4.6 103 1-108 404-518 (519)
27 PLN02987 Cytochrome P450, fami 99.9 8.9E-25 1.9E-29 161.8 6.3 101 1-108 357-469 (472)
28 PLN02302 ent-kaurenoic acid ox 99.9 6.3E-25 1.4E-29 162.3 5.3 99 2-109 379-489 (490)
29 PLN02196 abscisic acid 8'-hydr 99.9 8.6E-25 1.9E-29 161.3 4.4 95 2-106 355-461 (463)
30 KOG0684 Cytochrome P450 [Secon 99.9 1.8E-23 3.8E-28 151.3 4.9 103 5-108 369-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.8 8.4E-21 1.8E-25 138.6 2.9 91 1-106 307-409 (411)
32 PLN02648 allene oxide synthase 99.8 1.3E-19 2.7E-24 134.7 2.8 78 4-81 368-462 (480)
33 PF08492 SRP72: SRP72 RNA-bind 76.2 2 4.4E-05 23.2 1.5 9 34-42 43-51 (59)
34 PF01629 DUF22: Domain of unkn 60.4 8.2 0.00018 23.6 2.0 39 2-40 58-96 (112)
35 PF12508 DUF3714: Protein of u 57.6 8.2 0.00018 26.1 1.8 16 1-16 79-94 (200)
36 PRK14759 potassium-transportin 48.6 7.3 0.00016 17.9 0.3 6 34-39 24-29 (29)
37 PF09604 Potass_KdpF: F subuni 48.4 7.4 0.00016 17.2 0.3 6 34-39 20-25 (25)
38 KOG3506 40S ribosomal protein 46.2 8.6 0.00019 20.4 0.4 9 57-65 13-22 (56)
39 COG2101 SPT15 TATA-box binding 39.9 13 0.00028 24.7 0.6 35 32-68 35-70 (185)
40 TIGR02115 potass_kdpF K+-trans 36.4 8.8 0.00019 17.2 -0.4 7 34-40 19-25 (26)
41 PF11138 DUF2911: Protein of u 34.6 48 0.001 21.3 2.6 16 1-16 56-71 (145)
42 cd04518 TBP_archaea archaeal T 34.0 15 0.00033 24.2 0.2 34 32-67 29-63 (174)
43 PF11227 DUF3025: Protein of u 31.4 29 0.00062 23.8 1.2 23 16-38 188-211 (212)
44 TIGR03779 Bac_Flav_CT_M Bacter 31.4 36 0.00078 25.7 1.8 16 1-16 282-297 (410)
45 PRK09919 anti-adapter protein 27.4 34 0.00073 21.1 0.9 37 4-40 35-75 (114)
46 PRK00394 transcription factor; 25.9 26 0.00057 23.2 0.3 33 32-66 28-61 (179)
47 PF14510 ABC_trans_N: ABC-tran 25.3 24 0.00052 20.1 0.0 19 23-41 23-41 (85)
48 cd00652 TBP_TLF TATA box bindi 22.6 33 0.00071 22.5 0.3 34 32-67 29-63 (174)
49 PF14550 Peptidase_U35_2: Puta 22.5 56 0.0012 20.3 1.3 25 2-29 78-102 (122)
50 KOG2376 Signal recognition par 22.1 57 0.0012 26.0 1.5 21 23-43 570-590 (652)
51 PF04798 Baculo_19: Baculoviru 21.8 55 0.0012 21.1 1.2 23 51-74 56-79 (146)
52 PF07886 BA14K: BA14K-like pro 21.8 79 0.0017 14.6 1.4 15 51-65 16-31 (31)
53 PLN00062 TATA-box-binding prot 21.7 31 0.00068 22.9 0.1 34 32-67 29-63 (179)
54 COG1417 Uncharacterized conser 21.4 1.2E+02 0.0026 21.6 2.8 65 2-72 87-151 (288)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.3e-28 Score=180.61 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=86.3
Q ss_pred ccc-cEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PTR-SYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i~-g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++. ++.|+||+.|.++.|++||||++||||++|+||||.+++. + ...+.+|+|||.| |+|||++||++
T Consensus 382 ~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~--~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~ 458 (499)
T KOG0158|consen 382 EIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENN--K-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALA 458 (499)
T ss_pred ecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCcc--c-ccCCccccCCCCCccccHHHHHHHHHHHHHHH
Confidence 466 8999999999999999999999999999999999997652 1 4467899999999 99999999999
Q ss_pred ----ceeeecCCCCcccccccc---ceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGL---RLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~ 108 (114)
+|+++..+. .+.. ... +.++.++.++.+++++|.
T Consensus 459 ~lL~~f~~~~~~~-t~~~-~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 459 HLLRNFSFEVCPT-TIIP-LEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred HHHhhCEEecCCc-ccCc-ccCCccceeeecCCceEEEEEeCC
Confidence 999988763 2222 333 677888999999999874
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.4e-28 Score=181.05 Aligned_cols=103 Identities=32% Similarity=0.628 Sum_probs=88.3
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++|+||.|||||.|+++.|++||||++|+||++|+||||++.+ +.+.....++|||.| |.|+|+.+|++
T Consensus 374 ~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~---d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la 450 (489)
T KOG0156|consen 374 TKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN---DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLA 450 (489)
T ss_pred eeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc---cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999863 123367899999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|+++.+ .+++.+. ++++..+.++.+...+|.
T Consensus 451 ~llq~F~w~~~~~-~~d~~e~-~~~~~~~~pl~~~~~~r~ 488 (489)
T KOG0156|consen 451 NLLQRFDWKLPGG-KVDMEEA-GLTLKKKKPLKAVPVPRL 488 (489)
T ss_pred HHHheeeeecCCC-CCCCccc-ccceecCCcceeeeecCC
Confidence 999999877 6677666 466677778888877764
No 3
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.95 E-value=6.7e-28 Score=178.99 Aligned_cols=107 Identities=22% Similarity=0.481 Sum_probs=86.2
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|.+++|++|||+++|+||++|+||||+++.+..........|+|||.| |+|+|++||++
T Consensus 382 ~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ 461 (503)
T PLN02394 382 KLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGR 461 (503)
T ss_pred ccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998653211122245689999999 99999999998
Q ss_pred ---ceeeecCCCC-ccccccccc-eEeeecCCeEEEEEEcc
Q 047019 73 ---SFDFATPSNK-PLVMGEGLR-LTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ---~f~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~r~ 108 (114)
+|++++.++. .++..+..+ +.+..+.++++.+++|.
T Consensus 462 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 462 LVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence 9999887664 355554453 45545668999999885
No 4
>PLN02971 tryptophan N-hydroxylase
Probab=99.94 E-value=5e-28 Score=181.52 Aligned_cols=109 Identities=18% Similarity=0.387 Sum_probs=88.7
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|+++.|++|||+++|+||++|+||||+++.++......++.|+|||.| |+|+|++||++
T Consensus 416 ~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ 495 (543)
T PLN02971 416 TVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLAR 495 (543)
T ss_pred eECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999753211112245689999999 99999999998
Q ss_pred ---ceeeecCCC-CccccccccceEeeecCCeEEEEEEccccc
Q 047019 73 ---SFDFATPSN-KPLVMGEGLRLTVKKSAPLEVLVALLLSAA 111 (114)
Q Consensus 73 ---~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 111 (114)
+|+|++.++ ..+++.+.++ ++..++++.+.+++|.++.
T Consensus 496 ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 537 (543)
T PLN02971 496 LLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELRLSED 537 (543)
T ss_pred HHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeecCCcc
Confidence 999998764 3566766666 5545668999999996543
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.94 E-value=1.8e-27 Score=176.61 Aligned_cols=107 Identities=30% Similarity=0.522 Sum_probs=86.7
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
+++||.|||||.|.++.|++||||++| +||++|+||||+++.+..........++|||.| |+|+|++||++
T Consensus 377 ~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la 456 (499)
T PLN03234 377 KIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFA 456 (499)
T ss_pred eECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHH
Confidence 578999999999999999999999999 899999999999754222223346789999999 99999999987
Q ss_pred ----ceeeecCCC---CccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSN---KPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|+++++ +.+......+++..++..+.+.+++|.
T Consensus 457 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (499)
T PLN03234 457 NLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKHI 499 (499)
T ss_pred HHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecCC
Confidence 999998765 234455556777767778888877763
No 6
>PLN02183 ferulate 5-hydroxylase
Probab=99.94 E-value=5e-27 Score=175.10 Aligned_cols=107 Identities=27% Similarity=0.509 Sum_probs=84.1
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|.++.|++|||+++|+||++|+||||+++++ .+.....+.|+|||.| |+|+|++||++
T Consensus 392 ~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~-~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ 470 (516)
T PLN02183 392 EVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGV-PDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAH 470 (516)
T ss_pred eECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCC-ccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999997542 1122345689999999 99999999998
Q ss_pred ---ceeeecCCCCc---cccccccceEeeecCCeEEEEEEccc
Q 047019 73 ---SFDFATPSNKP---LVMGEGLRLTVKKSAPLEVLVALLLS 109 (114)
Q Consensus 73 ---~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~~ 109 (114)
+|++++.++.. ......++.+..+..++.+.+++|.-
T Consensus 471 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 513 (516)
T PLN02183 471 LLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRLQ 513 (516)
T ss_pred HHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCCC
Confidence 99998876532 33323345554456678888887743
No 7
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.94 E-value=6.4e-27 Score=174.14 Aligned_cols=103 Identities=16% Similarity=0.319 Sum_probs=84.2
Q ss_pred cccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 3 TRSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 3 i~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
++|+.|||||.|++++|++||||++| +||++|+||||+++.+.. ....++.|+|||.| |+|+|++||++
T Consensus 385 ~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~-~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ 463 (500)
T PLN02169 385 PSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGL-RHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALE 463 (500)
T ss_pred cCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCc-cCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 899999999999654211 11236789999999 99999999998
Q ss_pred ---ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ---SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++.++..+. ....+++.++.++.+++++|.
T Consensus 464 ll~~f~~~~~~~~~~~--~~~~~~l~~~~gl~l~l~~~~ 500 (500)
T PLN02169 464 IIKNYDFKVIEGHKIE--AIPSILLRMKHGLKVTVTKKI 500 (500)
T ss_pred HHHHCEEEEcCCCCcc--cccceEEecCCCEEEEEEeCC
Confidence 9999887544332 234567778889999999874
No 8
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.94 E-value=5.1e-27 Score=174.75 Aligned_cols=107 Identities=36% Similarity=0.664 Sum_probs=86.5
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCc-CccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDI-DVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~-~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
+++||.|||||.|.++.+++|+|+++|+||++|+||||+++.... ......+.++|||.| |.|+|++||++
T Consensus 378 ~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la 457 (504)
T PLN00110 378 EVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILG 457 (504)
T ss_pred eeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999643111 111123589999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++.++.........++++.++.++.+.+++|.
T Consensus 458 ~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 458 TLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRL 497 (504)
T ss_pred HHHHhceeecCCCCccCcccccccccccCCCceEeeccCC
Confidence 899998765444433345667778889999999885
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.94 E-value=5.1e-27 Score=173.52 Aligned_cols=98 Identities=21% Similarity=0.345 Sum_probs=80.7
Q ss_pred cc-ccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PT-RSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i-~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++ +||.|||||.|.++.+++||||++|+||++|+||||++.. ...+|+|||.| |+|+|++||++
T Consensus 372 ~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-------~~~~~~pFg~G~R~C~G~~~A~~e~~~~la 444 (482)
T PTZ00404 372 IIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-------SNDAFMPFSIGPRNCVGQQFAQDELYLAFS 444 (482)
T ss_pred EecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-------CCCceeccCCCCCCCccHHHHHHHHHHHHH
Confidence 56 8999999999999999999999999999999999998642 24589999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALL 107 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 107 (114)
+|++++.+++.+......++++. +.++.+.+++|
T Consensus 445 ~ll~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 445 NIILNFKLKSIDGKKIDETEEYGLTLK-PNKFKVLLEKR 482 (482)
T ss_pred HHHHhcEEecCCCCCCCcccccceeec-CCCceeeeecC
Confidence 99998866543333333455555 56788888776
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.93 E-value=8.4e-27 Score=173.98 Aligned_cols=108 Identities=20% Similarity=0.375 Sum_probs=84.9
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCc--C-ccCccceEEecCCC-CCCCCCccCCC----
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDI--D-VRGQHFELLSRGGG-GMCSGVSFCPP---- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~--~-~~~~~~~~~pFg~G-r~C~G~~lA~~---- 72 (114)
++++||.|||||.|.++.+++||||++|+||++|+||||++..... . .....+.++|||.| |+|+|++||++
T Consensus 395 ~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~ 474 (519)
T PLN00168 395 MEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEY 474 (519)
T ss_pred ccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999642111 1 11234689999999 99999999998
Q ss_pred -------ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 -------SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 -------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++.++..+++....+++..++.++.+.+++|.
T Consensus 475 ~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 475 FVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred HHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEecc
Confidence 999988765434433333455566678999988875
No 11
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.93 E-value=6.2e-27 Score=174.22 Aligned_cols=103 Identities=23% Similarity=0.395 Sum_probs=87.8
Q ss_pred cc-ccEEeCCCCEEEEcccccccCCCCCC-CCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC------
Q 047019 2 PT-RSYYILASTHLFINACQLQRDPRIWE-EQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (114)
Q Consensus 2 ~i-~g~~ipkg~~v~~~~~~~~~d~~~~~-~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------ 72 (114)
++ +||.||||+.|+++++++|||+.+|+ ||++|+||||+++.+. ...++++|+|||+| |+|+|++||++
T Consensus 380 ~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~--~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l 457 (497)
T KOG0157|consen 380 KLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEK--AKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVL 457 (497)
T ss_pred EcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCc--CCCCCccccCCCCCcccchhHHHHHHHHHHHH
Confidence 56 58999999999999999999999997 9999999999975421 13457899999999 99999999998
Q ss_pred -----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 -----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 -----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++..+.. ......+++.+..++.+.+++|.
T Consensus 458 ~~ll~~f~~~~~~~~~--~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 458 AHLLRRFRIEPVGGDK--PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred HHHHHheEEEecCCCC--ceeeeEEEEEecCCeEEEEEeCC
Confidence 89999876533 44456788889999999999985
No 12
>PLN02738 carotene beta-ring hydroxylase
Probab=99.93 E-value=2.1e-26 Score=175.36 Aligned_cols=107 Identities=26% Similarity=0.458 Sum_probs=85.3
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|.++.|.+||||++|+||++|+||||+.+..+.........++|||.| |+|+|++||++
T Consensus 478 ~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~ 557 (633)
T PLN02738 478 MLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAM 557 (633)
T ss_pred eECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998532111112345689999999 99999999998
Q ss_pred ---ceeeecCCCC-ccccccccceEeeecCCeEEEEEEcccc
Q 047019 73 ---SFDFATPSNK-PLVMGEGLRLTVKKSAPLEVLVALLLSA 110 (114)
Q Consensus 73 ---~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 110 (114)
+|+|++.++. .+.. ..+.++.+..++.+++++|.+.
T Consensus 558 Llr~F~~el~~~~~~~~~--~~~~~~~p~~~l~v~l~~R~~~ 597 (633)
T PLN02738 558 LVRRFDFQLAPGAPPVKM--TTGATIHTTEGLKMTVTRRTKP 597 (633)
T ss_pred HHHhCeeEeCCCCCCccc--ccceEEeeCCCcEEEEEECCCC
Confidence 9999887653 2222 2345666778999999998664
No 13
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.93 E-value=1.8e-26 Score=171.91 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=81.7
Q ss_pred cccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 3 TRSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 3 i~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
++|+.|||||.|.++.|++||||++| +||++|+||||+++++ .....+..|+|||.| |+|+|++||++
T Consensus 402 ~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~--~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ 479 (516)
T PLN03195 402 PDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGV--FQNASPFKFTAFQAGPRICLGKDSAYLQMKMALAL 479 (516)
T ss_pred CCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCC--cCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 9999999999996431 112245689999999 99999999998
Q ss_pred ---ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ---SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|++++.++..... ....++.+..++.+++++|.
T Consensus 480 ll~~f~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 480 LCRFFKFQLVPGHPVKY--RMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred HHHhceeEecCCCccee--eeeeEEecCCCEEEEEEeCC
Confidence 89998765433322 22345667788999998873
No 14
>PLN02966 cytochrome P450 83A1
Probab=99.93 E-value=2.9e-26 Score=170.43 Aligned_cols=103 Identities=28% Similarity=0.529 Sum_probs=79.9
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
+++||.|||||.|.++.|++||||++| +||++|+||||++... ........|+|||.| |+|+|++||++
T Consensus 380 ~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~--~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la 457 (502)
T PLN02966 380 KIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEV--DFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYA 457 (502)
T ss_pred eEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCC--CcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999 9999999999996531 112245689999999 99999999987
Q ss_pred ----ceeeecCCCC---ccccccccceEeeecCCeEEEEEE
Q 047019 73 ----SFDFATPSNK---PLVMGEGLRLTVKKSAPLEVLVAL 106 (114)
Q Consensus 73 ----~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
+|+|++.++. .++.+...+++..+...+++..++
T Consensus 458 ~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 458 NLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498 (502)
T ss_pred HHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence 8999987653 233344456655444456554443
No 15
>PLN02290 cytokinin trans-hydroxylase
Probab=99.93 E-value=3.1e-26 Score=170.60 Aligned_cols=101 Identities=18% Similarity=0.304 Sum_probs=83.1
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
+++||.|||||.|+++.|++||||++| +||++|+||||++.. ......|+|||.| |.|+|++||++
T Consensus 403 ~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~-----~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la 477 (516)
T PLN02290 403 KLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP-----FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILA 477 (516)
T ss_pred eECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCC-----CCCCCeEecCCCCCCCCccHHHHHHHHHHHHH
Confidence 578999999999999999999999999 899999999999532 1123579999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEccc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLLS 109 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 109 (114)
+|++++.++.. ......+++.++.++.+++++|.+
T Consensus 478 ~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~ 516 (516)
T PLN02290 478 MLISKFSFTISDNYR--HAPVVVLTIKPKYGVQVCLKPLNP 516 (516)
T ss_pred HHHHhceEeeCCCcc--cCccceeeecCCCCCeEEEEeCCC
Confidence 99998776422 112234677788899999998864
No 16
>PLN02936 epsilon-ring hydroxylase
Probab=99.93 E-value=8.5e-26 Score=167.63 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=87.8
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
.++||.||||+.|+++.+++||||++|+||++|+||||+.+............++|||.| |.|+|++||++
T Consensus 366 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ 445 (489)
T PLN02936 366 LPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAV 445 (489)
T ss_pred ccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999999643111112234589999999 99999999998
Q ss_pred ---ceeeecCCCCccccccccceEeeecCCeEEEEEEccccccCC
Q 047019 73 ---SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLLSAAFDS 114 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 114 (114)
+|++++.+++.+.. ..++++.++.++.+++++|.....+|
T Consensus 446 ll~~f~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~R~~~~~~~ 488 (489)
T PLN02936 446 LLQRLDLELVPDQDIVM--TTGATIHTTNGLYMTVSRRRVPDGDS 488 (489)
T ss_pred HHHhCeEEecCCCccce--ecceEEeeCCCeEEEEEeeeCCCCCC
Confidence 89999876543332 23455667789999999998776554
No 17
>PLN02655 ent-kaurene oxidase
Probab=99.92 E-value=8.3e-26 Score=166.74 Aligned_cols=105 Identities=23% Similarity=0.338 Sum_probs=85.7
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++||.|||||.|+++.+++|||+++|+||++|+||||+++.. .......++|||.| |.|+|++||++
T Consensus 349 ~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~---~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~ 425 (466)
T PLN02655 349 TTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKY---ESADMYKTMAFGAGKRVCAGSLQAMLIACMAIA 425 (466)
T ss_pred cccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCc---ccCCcccccCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999997531 11234689999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEccc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLLS 109 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 109 (114)
+|+|++.++.. ......++++.++.++.+++++|.+
T Consensus 426 ~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 426 RLVQEFEWRLREGDE-EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred HHHHHeEEEeCCCCc-cccchhheeEeecCCcEEEEeecCC
Confidence 89999865532 1223456677788899999988864
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.92 E-value=7.4e-26 Score=168.83 Aligned_cols=107 Identities=31% Similarity=0.596 Sum_probs=84.0
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCc--CccCccceEEecCCC-CCCCCCccCCC------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDI--DVRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~--~~~~~~~~~~pFg~G-r~C~G~~lA~~------ 72 (114)
+++||.|||||.|.++.|++|||+++|+||++|+||||++..... ........++|||.| |+|+|++||++
T Consensus 386 ~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~l 465 (517)
T PLN02687 386 EINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLT 465 (517)
T ss_pred eECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999643111 112245689999999 99999999998
Q ss_pred -----ceeeecCCCC---ccccccccceEeeecCCeEEEEEEcc
Q 047019 73 -----SFDFATPSNK---PLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 -----~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|++++.++. .+.......+.+.+..++.+..++|.
T Consensus 466 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 466 ATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 8999887652 23333334555556668888888884
No 19
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.92 E-value=7.2e-26 Score=168.64 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=82.4
Q ss_pred ccEEeCCCCEEEEcccccccCCCCC-CCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC---------
Q 047019 4 RSYYILASTHLFINACQLQRDPRIW-EEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP--------- 72 (114)
Q Consensus 4 ~g~~ipkg~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~--------- 72 (114)
+|+.|||||.|.++.|++|||+++| +||++|+||||++++ ......++.++|||.| |.|+|++||++
T Consensus 385 ~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~--~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~l 462 (502)
T PLN02426 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNG--VFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAV 462 (502)
T ss_pred CCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCC--CcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 999999999999743 1112245689999999 99999999998
Q ss_pred --ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 --SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 --~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|++++.++.........++++.++.++.+++++|.
T Consensus 463 l~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 463 VRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred HHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEcc
Confidence 899987543221112223567778889999999874
No 20
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.92 E-value=4.9e-26 Score=167.34 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=81.7
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++||.||||+.|+++.+++|+|+++|+||++|+||||+++. ..+..|+|||.| |+|+|++||++
T Consensus 342 ~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~------~~~~~~~pFG~G~R~C~G~~lA~~el~~~la 415 (452)
T PLN03141 342 VEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKD------MNNSSFTPFGGGQRLCPGLDLARLEASIFLH 415 (452)
T ss_pred eeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCC------CCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999999999643 135689999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++.++... ...++.+..++.+.+++|.
T Consensus 416 ~ll~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 416 HLVTRFRWVAEEDTIV-----NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred HHHhcCeeecCCCCee-----ecccccCCCCceEEEEeCC
Confidence 999987654321 1235667789999999985
No 21
>PLN02500 cytochrome P450 90B1
Probab=99.92 E-value=7.8e-26 Score=167.68 Aligned_cols=102 Identities=12% Similarity=0.246 Sum_probs=77.6
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCc----cCccceEEecCCC-CCCCCCccCCC---
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDV----RGQHFELLSRGGG-GMCSGVSFCPP--- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~----~~~~~~~~pFg~G-r~C~G~~lA~~--- 72 (114)
++++||.|||||.|+++.|++||||++|+||++|+||||+++.+.... ...++.|+|||.| |.|+|++||++
T Consensus 371 ~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~ 450 (490)
T PLN02500 371 VRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMA 450 (490)
T ss_pred ceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHH
Confidence 367999999999999999999999999999999999999965321110 1235689999999 99999999998
Q ss_pred --------ceeeecCCCCccccccccceEeeecCCeEEEEEE
Q 047019 73 --------SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVAL 106 (114)
Q Consensus 73 --------~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
+|+|++.++..... .... .+..++.+++++
T Consensus 451 ~~la~ll~~f~~~~~~~~~~~~---~~~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 451 VFIHHLVLNFNWELAEADQAFA---FPFV-DFPKGLPIRVRR 488 (490)
T ss_pred HHHHHHHhccEEEEcCCCccee---cccc-cCCCCceEEEEe
Confidence 99998866432211 1122 224577777764
No 22
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.92 E-value=1.8e-26 Score=166.31 Aligned_cols=99 Identities=25% Similarity=0.430 Sum_probs=74.9
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|.++.+++|+|+++|+||++|+||||++... ........++|||.| |.|+|++||++
T Consensus 351 ~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ 428 (463)
T PF00067_consen 351 TLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG--ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAK 428 (463)
T ss_dssp EETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS--TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccchHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998752 123456789999999 99999999998
Q ss_pred ---ceeeecCCCCcccccccc-ceEeeecCCeEEE
Q 047019 73 ---SFDFATPSNKPLVMGEGL-RLTVKKSAPLEVL 103 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 103 (114)
+|++++.++......... +++. ++.+++|.
T Consensus 429 ll~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 462 (463)
T PF00067_consen 429 LLRRFDFELVPGSEPEPQEQQNGFLL-PPKPLKVK 462 (463)
T ss_dssp HHHHEEEEESTTSSGGEEECSCSSSE-EESSSEEE
T ss_pred HHHhCEEEECCCCCCCCccccCceEe-eCCCcEEe
Confidence 999999765333322222 2333 34456654
No 23
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.92 E-value=1.2e-25 Score=167.45 Aligned_cols=110 Identities=26% Similarity=0.527 Sum_probs=86.7
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCC-cC-ccCccceEEecCCC-CCCCCCccCCC------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKD-ID-VRGQHFELLSRGGG-GMCSGVSFCPP------ 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~-~~-~~~~~~~~~pFg~G-r~C~G~~lA~~------ 72 (114)
+++|+.|||||.|.++.+++||||++|+||++|+||||+.+.+. .. ......+|+|||.| |+|+|++||++
T Consensus 385 ~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~l 464 (514)
T PLN03112 385 TINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMAL 464 (514)
T ss_pred eEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998653211 11 11234689999999 99999999998
Q ss_pred -----ceeeecCCCC---ccccccccceEeeecCCeEEEEEEccccc
Q 047019 73 -----SFDFATPSNK---PLVMGEGLRLTVKKSAPLEVLVALLLSAA 111 (114)
Q Consensus 73 -----~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 111 (114)
+|++++..+. .+......++.+++.+++.+++++|....
T Consensus 465 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 511 (514)
T PLN03112 465 ARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLAPH 511 (514)
T ss_pred HHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCccc
Confidence 9999886542 23333344666677889999999997543
No 24
>PLN03018 homomethionine N-hydroxylase
Probab=99.92 E-value=2.8e-25 Score=166.54 Aligned_cols=107 Identities=22% Similarity=0.378 Sum_probs=83.3
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCc---CccCccceEEecCCC-CCCCCCccCCC-----
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDI---DVRGQHFELLSRGGG-GMCSGVSFCPP----- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~---~~~~~~~~~~pFg~G-r~C~G~~lA~~----- 72 (114)
+++||.|||||.|.++.|++|+||++|+||++|+||||+++.+.. ........++|||.| |+|+|++||++
T Consensus 403 ~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~ 482 (534)
T PLN03018 403 TLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMM 482 (534)
T ss_pred eECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999643110 011245689999999 99999999998
Q ss_pred ------ceeeecCCCC-ccccccccceEeeecCCeEEEEEEccc
Q 047019 73 ------SFDFATPSNK-PLVMGEGLRLTVKKSAPLEVLVALLLS 109 (114)
Q Consensus 73 ------~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~ 109 (114)
+|+|++.++. .++.....+++.. +.++.+.+++|..
T Consensus 483 la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-p~~~~v~~~~R~~ 525 (534)
T PLN03018 483 LARFLQGFNWKLHQDFGPLSLEEDDASLLM-AKPLLLSVEPRLA 525 (534)
T ss_pred HHHHHHhceEEeCCCCCCCCccccccceec-CCCeEEEEEeccc
Confidence 9999876542 3333333344443 4689999999943
No 25
>PLN02774 brassinosteroid-6-oxidase
Probab=99.92 E-value=1.5e-25 Score=165.20 Aligned_cols=97 Identities=18% Similarity=0.380 Sum_probs=77.0
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++||.||||+.|+++.+++||||++|+||++|+||||+++. . . ....++|||+| |.|+|++||++
T Consensus 354 ~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~--~--~-~~~~~lpFG~G~r~C~G~~~A~~e~~~~la 428 (463)
T PLN02774 354 MELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKS--L--E-SHNYFFLFGGGTRLCPGKELGIVEISTFLH 428 (463)
T ss_pred eeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCC--c--C-CCccccCcCCCCCcCCcHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999643 1 1 12369999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEE
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVAL 106 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
+|+|++.++..... .. +..+++++.+++++
T Consensus 429 ~Ll~~f~~~~~~~~~~~~---~~-~~~p~~g~~~~~~~ 462 (463)
T PLN02774 429 YFVTRYRWEEVGGDKLMK---FP-RVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHhceEEECCCCcccc---CC-CCCCCCCceEEeee
Confidence 99999876533221 11 22356778887763
No 26
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=1.9e-25 Score=163.86 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=89.0
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++||.|||||.|.++.+.+.+||++|++|++|+|||||++.. ...+++.++|||.| |+|+|++||.+
T Consensus 404 ~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~---~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLa 480 (519)
T KOG0159|consen 404 LVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST---KTIHPFASLPFGFGPRMCLGRRIAELELHLLLA 480 (519)
T ss_pred ceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc---CCCCCceecCCCCCccccchHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999998751 35678999999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+++...+.++. ....+++.|..++.+.+++|.
T Consensus 481 rllr~f~V~~~~~~pv~--~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 481 RLLRNFKVEFLHEEPVE--YVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred HHHHhcceeecCCCCcc--ceeEEEEcCCCCcceeeeeCC
Confidence 9999987654444 345677788889999998874
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.91 E-value=8.9e-25 Score=161.79 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=82.9
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++||.||||+.|.++.+.+|+|+++|+||++|+||||+++.. .......++|||.| |.|+|++||++
T Consensus 357 ~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~---~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la 433 (472)
T PLN02987 357 IEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSG---TTVPSNVFTPFGGGPRLCPGYELARVALSVFLH 433 (472)
T ss_pred eeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCC---CCCCCcceECCCCCCcCCCcHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999997531 11234689999999 99999999998
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|+|++.++..+.. ..++.|.+++.+++++|.
T Consensus 434 ~ll~~f~~~~~~~~~~~~----~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 434 RLVTRFSWVPAEQDKLVF----FPTTRTQKRYPINVKRRD 469 (472)
T ss_pred HHHhceEEEECCCCceee----cccccCCCCceEEEEecc
Confidence 99999876543222 235667778999999874
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.91 E-value=6.3e-25 Score=162.34 Aligned_cols=99 Identities=12% Similarity=0.149 Sum_probs=80.9
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.||||+.|.++.+++|||+++|+||++|+||||++.. ..+..++|||.| |.|+|++||.+
T Consensus 379 ~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~------~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ 452 (490)
T PLN02302 379 EVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT------PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHH 452 (490)
T ss_pred eECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC------CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998642 234589999999 99999999997
Q ss_pred ---ceeeecCCCCccccccccceEeeecCCeEEEEEEccc
Q 047019 73 ---SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLLS 109 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 109 (114)
+|+|++.++. ..+. ......|..++.+++++|.+
T Consensus 453 ll~~f~~~~~~~~-~~~~--~~~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 453 FLLGYRLERLNPG-CKVM--YLPHPRPKDNCLARITKVAS 489 (490)
T ss_pred HHhcCeeEEcCCC-Ccce--eCCCCCCCCCceEEEEeccC
Confidence 8999876532 1221 11235677788999988865
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.90 E-value=8.6e-25 Score=161.30 Aligned_cols=95 Identities=12% Similarity=0.188 Sum_probs=77.4
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC--------
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP-------- 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~-------- 72 (114)
+++||.|||||.|+++.+++|+|+++|+||++|+||||++.. .+..++|||.| |.|+|++||++
T Consensus 355 ~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-------~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ 427 (463)
T PLN02196 355 EYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-------KPNTFMPFGNGTHSCPGNELAKLEISVLIHH 427 (463)
T ss_pred ccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-------CCCcccCcCCCCCCCchHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998632 24589999999 99999999998
Q ss_pred ---ceeeecCCCCccccccccceEeeecCCeEEEEEE
Q 047019 73 ---SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVAL 106 (114)
Q Consensus 73 ---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
+|+|++.+++ ..+. ...+..|+..+.+++++
T Consensus 428 ll~~f~~~~~~~~-~~~~--~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 428 LTTKYRWSIVGTS-NGIQ--YGPFALPQNGLPIALSR 461 (463)
T ss_pred HHHhcEEEEcCCC-CceE--EcccccCCCCceEEEec
Confidence 9999887542 2222 22234567778777764
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.8e-23 Score=151.32 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=84.7
Q ss_pred cEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccC--ccceEEecCCC-CCCCCCccCCC---------
Q 047019 5 SYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRG--QHFELLSRGGG-GMCSGVSFCPP--------- 72 (114)
Q Consensus 5 g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~--~~~~~~pFg~G-r~C~G~~lA~~--------- 72 (114)
.|.||+|.+|.+++..+|+||++|+||+.|+|+||++++++....+ -.+.+||||+| +.|+|+.||.+
T Consensus 369 ~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~ 448 (486)
T KOG0684|consen 369 EYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLL 448 (486)
T ss_pred ceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999998764332222 34567999999 99999999999
Q ss_pred --ceeeecCCCCccccccccceEeeecCCeEEEEEEcc
Q 047019 73 --SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVALLL 108 (114)
Q Consensus 73 --~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 108 (114)
+|++++.+++....+ ...++..|.++++++.++|.
T Consensus 449 L~~fdleLid~~~P~~d-~s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 449 LRHFDLELIDGPFPEVD-YSRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHHcceeecCCCCCCCC-HHHhhcCCCCCceEEEeecC
Confidence 999999986333332 23457788999999998874
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=8.4e-21 Score=138.65 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=70.5
Q ss_pred CccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCccCCC-------
Q 047019 1 MPTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVSFCPP------- 72 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~lA~~------- 72 (114)
++++|+.||||+.|++++++.||||++|++|++|+|+||. ..++|||+| |.|+|.+||++
T Consensus 307 ~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~------------~~~l~FG~G~H~ClG~~lA~~E~~~~l~ 374 (411)
T COG2124 307 VELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN------------NAHLPFGGGPHRCLGAALARLELKVALA 374 (411)
T ss_pred EeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC------------CCCcCCCCCCccccCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999996 367999999 99999999999
Q ss_pred ----ceeeecCCCCccccccccceEeeecCCeEEEEEE
Q 047019 73 ----SFDFATPSNKPLVMGEGLRLTVKKSAPLEVLVAL 106 (114)
Q Consensus 73 ----~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (114)
+|++....+ . .......+..+.....+.++.
T Consensus 375 ~ll~r~~~~~~~~-~--~~~~~~~~~~~~g~~~l~v~~ 409 (411)
T COG2124 375 ELLRRFPLLLLAE-P--PPLVRRPTLVPRGGERLPVRR 409 (411)
T ss_pred HHHHhCchhhcCC-C--CCccccccccCCCcceeeeec
Confidence 777665443 1 111223334445555555543
No 32
>PLN02648 allene oxide synthase
Probab=99.77 E-value=1.3e-19 Score=134.73 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=59.8
Q ss_pred ccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCcc----CccceEEecCCC-CCCCCCccCCC------
Q 047019 4 RSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVR----GQHFELLSRGGG-GMCSGVSFCPP------ 72 (114)
Q Consensus 4 ~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~----~~~~~~~pFg~G-r~C~G~~lA~~------ 72 (114)
+||.||||+.|+++.+.+|||+++|+||++|+|+||+++....... +......+||+| |.|+|++||++
T Consensus 368 ~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~l 447 (480)
T PLN02648 368 AAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFV 447 (480)
T ss_pred ceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999998643111000 001122334789 99999999998
Q ss_pred -----cee-eecCCC
Q 047019 73 -----SFD-FATPSN 81 (114)
Q Consensus 73 -----~f~-~~~~~~ 81 (114)
+|+ |++.++
T Consensus 448 a~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 448 AELFLRYDSFEIEVD 462 (480)
T ss_pred HHHHHHhCEEeecCC
Confidence 887 887654
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=76.21 E-value=2 Score=23.19 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.1
Q ss_pred cCCCcccCC
Q 047019 34 VQPETFLTR 42 (114)
Q Consensus 34 F~P~R~l~~ 42 (114)
-||||||..
T Consensus 43 PDPERWLP~ 51 (59)
T PF08492_consen 43 PDPERWLPK 51 (59)
T ss_pred CCccccCch
Confidence 489999964
No 34
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=60.36 E-value=8.2 Score=23.64 Aligned_cols=39 Identities=10% Similarity=-0.039 Sum_probs=29.0
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCccc
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFL 40 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l 40 (114)
.|....||++|++++..+.-|.-..+-+=-++..|-++.
T Consensus 58 kIk~I~iP~~tIv~p~~~~rha~G~vi~v~e~~~p~~vE 96 (112)
T PF01629_consen 58 KIKKIEIPPNTIVMPCAYMRHALGSVIDVGEEGPPRPVE 96 (112)
T ss_pred EEEEEecCCCCEEEEchHhhccCccEEEEEeccCceeec
Confidence 355678999999999999999877666544555565554
No 35
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=57.63 E-value=8.2 Score=26.11 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.1
Q ss_pred CccccEEeCCCCEEEE
Q 047019 1 MPTRSYYILASTHLFI 16 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~ 16 (114)
+.++|..|||||.+.-
T Consensus 79 i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 79 IQIGGILIPKGTYLYG 94 (200)
T ss_pred eEECCEEeCCCCEEEE
Confidence 3578999999998864
No 36
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=48.62 E-value=7.3 Score=17.88 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=4.0
Q ss_pred cCCCcc
Q 047019 34 VQPETF 39 (114)
Q Consensus 34 F~P~R~ 39 (114)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 467776
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=48.37 E-value=7.4 Score=17.21 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=3.7
Q ss_pred cCCCcc
Q 047019 34 VQPETF 39 (114)
Q Consensus 34 F~P~R~ 39 (114)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 457765
No 38
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=46.22 E-value=8.6 Score=20.40 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=7.6
Q ss_pred ecCCC-CCCC
Q 047019 57 SRGGG-GMCS 65 (114)
Q Consensus 57 pFg~G-r~C~ 65 (114)
+||-| |.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 69999 9984
No 39
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=39.89 E-value=13 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=24.0
Q ss_pred CCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCCc
Q 047019 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGVS 68 (114)
Q Consensus 32 ~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~~ 68 (114)
.+|+|++|-.-- .....+..+.+-|..| -.|.|..
T Consensus 35 aeYnP~qFpGlv--~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLV--YRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeE--EEecCCcceEEEEecCcEEEeccC
Confidence 489999994210 0123345688999999 9999953
No 40
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=36.36 E-value=8.8 Score=17.16 Aligned_cols=7 Identities=43% Similarity=0.994 Sum_probs=4.6
Q ss_pred cCCCccc
Q 047019 34 VQPETFL 40 (114)
Q Consensus 34 F~P~R~l 40 (114)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677774
No 41
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=34.60 E-value=48 Score=21.25 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=12.7
Q ss_pred CccccEEeCCCCEEEE
Q 047019 1 MPTRSYYILASTHLFI 16 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~ 16 (114)
+.|+|..||+|+.-+.
T Consensus 56 v~igGk~l~AG~Ysl~ 71 (145)
T PF11138_consen 56 VTIGGKKLKAGTYSLF 71 (145)
T ss_pred eEECCEEcCCeeEEEE
Confidence 4689999999996544
No 42
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.97 E-value=15 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=23.3
Q ss_pred CCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCC
Q 047019 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGV 67 (114)
Q Consensus 32 ~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~ 67 (114)
.+|+|+||-.-- .....+..+.+-|+.| =.|.|-
T Consensus 29 ~eY~P~~fpgli--~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLV--YRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEE--EEccCCcEEEEEECCCeEEEEcc
Confidence 589999984311 1122345678899999 999985
No 43
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=31.42 E-value=29 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.4
Q ss_pred Eccccc-ccCCCCCCCCCCcCCCc
Q 047019 16 INACQL-QRDPRIWEEQCKVQPET 38 (114)
Q Consensus 16 ~~~~~~-~~d~~~~~~p~~F~P~R 38 (114)
++-|.- +.|+.+|.|.+.|+|-|
T Consensus 188 iPGW~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 188 IPGWWPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCCCCCCcccccCccccCCCC
Confidence 444443 77888999999999876
No 44
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=31.40 E-value=36 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=13.1
Q ss_pred CccccEEeCCCCEEEE
Q 047019 1 MPTRSYYILASTHLFI 16 (114)
Q Consensus 1 ~~i~g~~ipkg~~v~~ 16 (114)
+.++|..|||||.|.-
T Consensus 282 ~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 282 IQAGDLVIPKGTVLYG 297 (410)
T ss_pred eeeCCEEecCCCEEEE
Confidence 4678999999998764
No 45
>PRK09919 anti-adapter protein IraM; Provisional
Probab=27.38 E-value=34 Score=21.06 Aligned_cols=37 Identities=0% Similarity=0.010 Sum_probs=30.2
Q ss_pred ccEEeCCCCEEEEcccccccCCCCCC----CCCCcCCCccc
Q 047019 4 RSYYILASTHLFINACQLQRDPRIWE----EQCKVQPETFL 40 (114)
Q Consensus 4 ~g~~ipkg~~v~~~~~~~~~d~~~~~----~p~~F~P~R~l 40 (114)
+++++|.|+.+.+.--.+.-|.+..+ +-..|++..|.
T Consensus 35 ~d~~L~pG~~i~~~~~gvliNdk~~pItIYnvtpyn~~lW~ 75 (114)
T PRK09919 35 ADIFLPPGSIITPVKSGVLLNDKPYPITIYNITPFNKALWS 75 (114)
T ss_pred eeEEeCCCCEEEEcCCeEEECCcEeEEEEEEecccCHHHHH
Confidence 57899999999998888877777764 66779999994
No 46
>PRK00394 transcription factor; Reviewed
Probab=25.94 E-value=26 Score=23.16 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCcCCCcccCCCCCcCccCccceEEecCCC-CCCCC
Q 047019 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSG 66 (114)
Q Consensus 32 ~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G 66 (114)
.+|+|+||-.-- .....+..+.+-|+.| =.|.|
T Consensus 28 ~eYePe~fpgli--~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLV--YRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEE--EEecCCceEEEEEcCCcEEEEc
Confidence 589999984311 1122345678899999 99998
No 47
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=25.32 E-value=24 Score=20.08 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCcCCCcccC
Q 047019 23 RDPRIWEEQCKVQPETFLT 41 (114)
Q Consensus 23 ~d~~~~~~p~~F~P~R~l~ 41 (114)
.|+.+-|+.++|+.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4667778888999999985
No 48
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=22.64 E-value=33 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCC
Q 047019 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGV 67 (114)
Q Consensus 32 ~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~ 67 (114)
-+|+||||-.-- .....+.-+.+-|+.| =.|.|-
T Consensus 29 ~~YePe~fpgli--~R~~~P~~t~lIf~sGKivitGa 63 (174)
T cd00652 29 AEYNPKRFPGVI--MRLREPKTTALIFSSGKMVITGA 63 (174)
T ss_pred cEECCCccceEE--EEcCCCcEEEEEECCCEEEEEec
Confidence 589999984311 1112245678899999 999983
No 49
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=22.51 E-value=56 Score=20.32 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=16.0
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCC
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWE 29 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~ 29 (114)
+++|-.||+|+.|+.--. .|+++|.
T Consensus 78 ~~~g~~i~~GtWv~~~k~---~ddelWe 102 (122)
T PF14550_consen 78 EIGGETIPKGTWVVGVKI---TDDELWE 102 (122)
T ss_pred ccCCeeecceEEEEEEEe---cCHHHHH
Confidence 467889999998853222 2445553
No 50
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.13 E-value=57 Score=26.01 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=12.6
Q ss_pred cCCCCCCCCCCcCCCcccCCC
Q 047019 23 RDPRIWEEQCKVQPETFLTRH 43 (114)
Q Consensus 23 ~d~~~~~~p~~F~P~R~l~~~ 43 (114)
++|..|...-.=||||||...
T Consensus 570 k~pknyn~~~tPDPERWLP~r 590 (652)
T KOG2376|consen 570 KLPKNYNPKVTPDPERWLPRR 590 (652)
T ss_pred CCcccCCCCCCCChhhcccch
Confidence 345555444445789998653
No 51
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=21.79 E-value=55 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=17.5
Q ss_pred ccceEEecCCC-CCCCCCccCCCce
Q 047019 51 QHFELLSRGGG-GMCSGVSFCPPSF 74 (114)
Q Consensus 51 ~~~~~~pFg~G-r~C~G~~lA~~~f 74 (114)
.=+.|+- |.+ +.|++..+|..+|
T Consensus 56 ~lYyYle-gss~~~CP~nE~avVrf 79 (146)
T PF04798_consen 56 TLYYYLE-GSSSVFCPPNEFAVVRF 79 (146)
T ss_pred eEEEEEe-ccccccCCCCceEEEEE
Confidence 3456677 888 9999888888733
No 52
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=21.79 E-value=79 Score=14.64 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.5
Q ss_pred ccceEEecCCC-CCCC
Q 047019 51 QHFELLSRGGG-GMCS 65 (114)
Q Consensus 51 ~~~~~~pFg~G-r~C~ 65 (114)
...+|+|+.+. |.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 34589999977 8884
No 53
>PLN00062 TATA-box-binding protein; Provisional
Probab=21.70 E-value=31 Score=22.85 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=22.8
Q ss_pred CCcCCCcccCCCCCcCccCccceEEecCCC-CCCCCC
Q 047019 32 CKVQPETFLTRHKDIDVRGQHFELLSRGGG-GMCSGV 67 (114)
Q Consensus 32 ~~F~P~R~l~~~~~~~~~~~~~~~~pFg~G-r~C~G~ 67 (114)
.+|+||+|-.-- .....+..+.+-|+.| =.|.|-
T Consensus 29 ~eYePe~fpgli--~Rl~~Pk~t~lIF~SGKiviTGa 63 (179)
T PLN00062 29 AEYNPKRFAAVI--MRIREPKTTALIFASGKMVCTGA 63 (179)
T ss_pred CEECCccCcEEE--EEeCCCcEEEEEECCCeEEEEec
Confidence 689999984211 1112234578899999 999984
No 54
>COG1417 Uncharacterized conserved protein [Function unknown]
Probab=21.42 E-value=1.2e+02 Score=21.60 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=39.3
Q ss_pred ccccEEeCCCCEEEEcccccccCCCCCCCCCCcCCCcccCCCCCcCccCccceEEecCCCCCCCCCccCCC
Q 047019 2 PTRSYYILASTHLFINACQLQRDPRIWEEQCKVQPETFLTRHKDIDVRGQHFELLSRGGGGMCSGVSFCPP 72 (114)
Q Consensus 2 ~i~g~~ipkg~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~~pFg~Gr~C~G~~lA~~ 72 (114)
.|....||.+|.|.+..++.|.-...-+-.+ =.|-++..+. ......|+++..|+.--|--|...
T Consensus 87 kIk~V~lPpnTVv~p~~~arna~G~vldVve-g~Pr~vEe~R-----~id~AvFla~~dG~IeKGDLLGVl 151 (288)
T COG1417 87 KIKEVELPPNTVVVPLPYARNALGHVLDVVE-GKPRPVEEER-----KIDQAVFLAVRDGRIEKGDLLGVL 151 (288)
T ss_pred EEEEeccCCCcEEEEchhhcCcCccEEeecc-Cccccccccc-----ccceEEEEEeccCEEecCceEEEE
Confidence 4566789999999999999887655554333 2355553321 122346777777744444444443
Done!