BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047021
         (388 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BAZ|A Chain A, Structure Of Yoss, A Putative Dutpase From Bacillus
          Subtilis
 pdb|2BAZ|B Chain B, Structure Of Yoss, A Putative Dutpase From Bacillus
          Subtilis
 pdb|2BAZ|C Chain C, Structure Of Yoss, A Putative Dutpase From Bacillus
          Subtilis
 pdb|2XX6|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase,
          Yoss
 pdb|2XX6|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase,
          Yoss
 pdb|2XX6|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase,
          Yoss
 pdb|2XX6|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase,
          Yoss
 pdb|2XY3|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2XY3|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2XY3|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2XY3|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2XY3|E Chain E, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2XY3|F Chain F, Structure Of The Bacillus Subtilis Prophage Dutpase With
          Dupnhpp
 pdb|2Y1T|A Chain A, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
 pdb|2Y1T|B Chain B, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
 pdb|2Y1T|C Chain C, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
 pdb|2Y1T|D Chain D, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
 pdb|2Y1T|E Chain E, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
 pdb|2Y1T|F Chain F, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
          Length = 142

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 27 LQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKD 64
          +Q+K    +  QTRIN++EQ     LR A +DVA++KD
Sbjct: 1  MQIKIKYLDETQTRINKMEQGDWIDLRAA-EDVAIKKD 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.123    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,815,389
Number of Sequences: 62578
Number of extensions: 194051
Number of successful extensions: 605
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 35
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)