BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047021
(388 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spo15 PE=1 SV=1
Length = 1957
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 2 LLSQLKDFQKKNAELEEKNSILSSKLQV---KEVESESLQTRINELEQNTVPSLRKALKD 58
LL++LK + K A LE +N ILS +L K+ + S+ T +E V +K L +
Sbjct: 135 LLNELKQVRSKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTSE---EDVSYFQKKLTN 191
Query: 59 VAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLG 118
+ A DLS QL T+ ++L + E++ + +ED ++++A L ++QA + SL
Sbjct: 192 MESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASL--AEEQASNKSLR 249
Query: 119 G 119
G
Sbjct: 250 G 250
>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1
Length = 1972
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 41/249 (16%)
Query: 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKD 64
QL+D Q K ++ E + LS K+ + E ES+ +NE E + K KDVA
Sbjct: 1260 QLQDLQSKCSDGERARAELSDKVHKLQNEVESVTGMLNEAEGKAI----KLAKDVA---- 1311
Query: 65 AAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMG 124
L +QL+ ++ L+E ++ L E NSLQ Q +D +
Sbjct: 1312 -------SLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSLQDQ-LDEEM------- 1356
Query: 125 ISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSR 184
+ Q LE+ ++TL QL +K+L + + I V+ K+ L++++ S+
Sbjct: 1357 ---EAKQNLERHVSTLNIQL-------SDSKKKLQDFASTIEVMEEGKKRLQKEMEGLSQ 1406
Query: 185 KASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFE 244
+ E+ AAA + K +L+++L D+ V L++ RQ L+ ++ + + ++L
Sbjct: 1407 QYEEK---AAAYDKLE-KTKNRLQQELDDLVV---DLDNQRQ-LVSNLEKKQKKFDQLLA 1458
Query: 245 ENSSLSSSY 253
E ++SS Y
Sbjct: 1459 EEKNISSKY 1467
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2
Length = 729
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 66 AVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGI 125
AV A++ +QL LK RL+EA++ E ALR+E + + Q +GS +
Sbjct: 291 AVAAKD---SQLAVLKVRLQEADQVLSSRTEALEALRSEKSRIMQDHKEGS-------SL 340
Query: 126 SPDHVQTLEKELATLKSQLQQESQLRQQERKQL-TEEQARISVLMSEKQELEEKLVMFSR 184
+QTL++ L + L++E Q+ KQ+ +E AR++ + ++Q L E + + R
Sbjct: 341 QNQALQTLQERLHEADATLKRE----QESYKQMQSEFAARLNKMEVDRQNLAEAVTLAER 396
Query: 185 KASEE 189
K SEE
Sbjct: 397 KYSEE 401
>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3
Length = 1972
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 72 DLSAQLRTLKKRLKEAEEEQYRAE----------EDAAALRAELNS----LQQQ--AMDG 115
DL+ +LR L + +E E ++ + E D RAELN LQ + ++ G
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTG 1294
Query: 116 SLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQEL 175
L I L K++A+L SQLQ +L Q+E +Q ++ L E+ L
Sbjct: 1295 MLNEAEGKAIK------LAKDVASLSSQLQDTQELLQEETRQKLNVSTKLRQLEEERNSL 1348
Query: 176 EEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQ 235
+++L +A + + ++ + D +K+L D A VE LE +++ EI+N
Sbjct: 1349 QDQLDE-EMEAKQNLERHISTLNIQLSDS---KKKLQDFASTVEALEEGKKRFQKEIENL 1404
Query: 236 SSEIE 240
+ + E
Sbjct: 1405 TQQYE 1409
>sp|P35748|MYH11_RABIT Myosin-11 OS=Oryctolagus cuniculus GN=MYH11 PE=2 SV=2
Length = 1972
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 26/185 (14%)
Query: 72 DLSAQLRTLKKRLKEAEEEQYRAE----------EDAAALRAELNS----LQQQ--AMDG 115
DL+ +LR L + +E E ++ + E D RAELN LQ + ++ G
Sbjct: 1235 DLAGELRVLGQAKQEVEHKKKKLEVQLQELQSKCSDGERARAELNDKVHKLQNEVESVTG 1294
Query: 116 SLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQEL 175
L I L KE+A+L SQLQ +L Q+E +Q ++ L E+ L
Sbjct: 1295 MLSEAEGKAIK------LAKEVASLGSQLQDTQELLQEETRQKLNVSTKLRQLEDERNSL 1348
Query: 176 EEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQ 235
+E+L +A + + ++ + D +K+L D A VE LE +++ EI++
Sbjct: 1349 QEQLDE-EMEAKQNLERHISTLNIQLSDS---KKKLQDFASTVESLEEGKKRFQKEIESL 1404
Query: 236 SSEIE 240
+ + E
Sbjct: 1405 TQQYE 1409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.121 0.300
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,942,522
Number of Sequences: 539616
Number of extensions: 4347212
Number of successful extensions: 57801
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 3711
Number of HSP's that attempted gapping in prelim test: 38697
Number of HSP's gapped (non-prelim): 12155
length of query: 388
length of database: 191,569,459
effective HSP length: 119
effective length of query: 269
effective length of database: 127,355,155
effective search space: 34258536695
effective search space used: 34258536695
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)