Query 047021
Match_columns 388
No_of_seqs 17 out of 19
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:40:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.7 0.019 6.4E-07 48.2 35.3 73 207-279 179-251 (284)
2 1i84_S Smooth muscle myosin he 97.6 0.00013 4.4E-09 79.5 9.3 40 321-360 1123-1162(1184)
3 1c1g_A Tropomyosin; contractIl 97.3 0.058 2E-06 45.2 36.1 11 76-86 84-94 (284)
4 1i84_S Smooth muscle myosin he 96.7 0.0041 1.4E-07 67.9 8.9 84 6-90 859-942 (1184)
5 3na7_A HP0958; flagellar bioge 96.4 0.59 2E-05 42.7 21.3 66 70-144 41-106 (256)
6 3vkg_A Dynein heavy chain, cyt 95.6 1.2 4E-05 54.4 23.0 159 8-185 1907-2071(3245)
7 2dfs_A Myosin-5A; myosin-V, in 93.3 0.92 3.1E-05 49.9 13.8 53 7-59 917-972 (1080)
8 2fxo_A Myosin heavy chain, car 92.6 1.2 4.3E-05 37.3 10.7 66 158-227 64-129 (129)
9 2i1j_A Moesin; FERM, coiled-co 91.7 0.13 4.3E-06 52.8 4.3 130 136-272 301-447 (575)
10 3s4r_A Vimentin; alpha-helix, 90.9 1.8 6E-05 35.1 9.5 71 4-84 23-93 (93)
11 3oja_B Anopheles plasmodium-re 90.3 5 0.00017 39.3 13.9 44 62-105 496-539 (597)
12 3oja_B Anopheles plasmodium-re 86.2 11 0.00038 36.9 13.3 43 75-117 544-586 (597)
13 2dfs_A Myosin-5A; myosin-V, in 84.1 37 0.0013 37.5 17.5 44 3-46 927-974 (1080)
14 3s4r_A Vimentin; alpha-helix, 81.6 16 0.00056 29.4 10.3 74 156-242 16-89 (93)
15 3vkg_A Dynein heavy chain, cyt 80.4 1.2E+02 0.0043 37.6 23.1 55 155-209 2069-2130(3245)
16 3na7_A HP0958; flagellar bioge 74.0 52 0.0018 29.9 19.3 28 6-33 13-40 (256)
17 2jee_A YIIU; FTSZ, septum, coi 68.4 46 0.0016 26.9 9.8 67 218-284 8-78 (81)
18 3o0z_A RHO-associated protein 68.0 26 0.00088 31.6 8.9 56 128-183 62-117 (168)
19 2v4h_A NF-kappa-B essential mo 66.9 36 0.0012 29.0 9.1 27 115-146 9-35 (110)
20 3ol1_A Vimentin; structural ge 66.1 56 0.0019 27.1 10.1 77 5-82 21-97 (119)
21 3swk_A Vimentin; cytoskeleton, 62.4 57 0.0019 25.9 9.7 77 6-83 2-78 (86)
22 1t2k_D Cyclic-AMP-dependent tr 62.2 14 0.00046 27.3 5.0 37 5-41 23-59 (61)
23 4emc_A Monopolin complex subun 59.3 16 0.00053 33.7 5.9 51 11-61 20-73 (190)
24 3u1c_A Tropomyosin alpha-1 cha 57.1 76 0.0026 25.6 9.8 27 76-102 66-92 (101)
25 3ljm_A Coil Ser L9C; de novo d 55.2 12 0.0004 25.4 3.2 24 7-30 4-27 (31)
26 1dip_A Delta-sleep-inducing pe 54.9 8.6 0.00029 31.1 3.0 24 2-25 20-43 (78)
27 1g6u_A Domain swapped dimer; d 54.1 24 0.00081 25.8 5.0 29 99-139 3-31 (48)
28 2oqq_A Transcription factor HY 54.1 11 0.00037 27.4 3.2 18 4-21 10-27 (42)
29 3bas_A Myosin heavy chain, str 54.0 59 0.002 25.7 7.8 60 122-183 8-83 (89)
30 1ci6_A Transcription factor AT 52.2 25 0.00085 26.4 5.1 36 5-40 24-59 (63)
31 2v4h_A NF-kappa-B essential mo 52.0 97 0.0033 26.4 9.2 24 52-75 57-80 (110)
32 1j1d_C Troponin I, TNI; THIN f 49.8 29 0.00098 30.2 5.8 59 5-67 66-125 (133)
33 1gd2_E Transcription factor PA 49.8 21 0.00072 27.8 4.5 38 5-42 30-67 (70)
34 3tnu_B Keratin, type II cytosk 49.2 83 0.0028 26.0 8.4 65 319-383 34-98 (129)
35 2wt7_A Proto-oncogene protein 48.2 35 0.0012 25.4 5.3 37 5-41 24-60 (63)
36 3hnw_A Uncharacterized protein 48.1 33 0.0011 29.4 5.9 46 4-49 82-127 (138)
37 1jnm_A Proto-oncogene C-JUN; B 47.3 16 0.00055 27.1 3.3 36 5-40 23-58 (62)
38 3u59_A Tropomyosin beta chain; 46.1 95 0.0033 24.8 8.0 33 73-105 63-95 (101)
39 1j1e_C Troponin I, TNI; THIN f 44.4 33 0.0011 31.2 5.5 76 5-84 66-150 (180)
40 2oto_A M protein; helical coil 43.9 1.5E+02 0.0051 25.1 11.7 28 18-45 50-77 (155)
41 3hyb_A RBCX protein; rubisco, 43.3 14 0.00049 33.1 2.9 31 239-272 76-106 (155)
42 3jsv_C NF-kappa-B essential mo 43.2 67 0.0023 26.7 6.7 52 129-185 24-83 (94)
43 3cvf_A Homer-3, homer protein 42.7 48 0.0016 26.6 5.6 34 4-37 13-46 (79)
44 3nmd_A CGMP dependent protein 42.0 45 0.0015 26.5 5.3 33 14-46 36-68 (72)
45 1ic2_A Tropomyosin alpha chain 41.7 54 0.0019 25.3 5.7 39 5-43 28-66 (81)
46 3cve_A Homer protein homolog 1 41.1 55 0.0019 25.9 5.6 39 2-40 5-43 (72)
47 1wt6_A Myotonin-protein kinase 40.4 67 0.0023 26.1 6.1 65 22-99 14-78 (81)
48 2w6a_A ARF GTPase-activating p 40.4 40 0.0014 26.3 4.6 35 4-38 27-61 (63)
49 2v71_A Nuclear distribution pr 40.2 2.2E+02 0.0074 26.0 11.1 36 71-106 119-154 (189)
50 3tnu_A Keratin, type I cytoske 39.2 1.1E+02 0.0037 25.4 7.6 62 322-383 39-100 (131)
51 3m91_A Proteasome-associated A 38.9 66 0.0022 23.8 5.4 40 5-44 10-49 (51)
52 2fxo_A Myosin heavy chain, car 36.5 1.8E+02 0.0062 24.1 14.9 103 73-186 18-120 (129)
53 4dyl_A Tyrosine-protein kinase 35.9 2E+02 0.0069 27.6 9.9 44 6-49 304-347 (406)
54 1gmj_A ATPase inhibitor; coile 35.6 1.3E+02 0.0044 24.5 7.1 29 217-245 38-66 (84)
55 3cvf_A Homer-3, homer protein 35.6 21 0.00071 28.7 2.5 32 15-46 3-34 (79)
56 3tnu_B Keratin, type II cytosk 35.5 1.9E+02 0.0064 23.9 8.7 26 22-47 47-72 (129)
57 1hjb_A Ccaat/enhancer binding 35.1 1.5E+02 0.0052 23.8 7.5 61 64-124 25-85 (87)
58 3qh9_A Liprin-beta-2; coiled-c 34.4 1.1E+02 0.0037 24.9 6.5 58 56-113 2-64 (81)
59 3ol1_A Vimentin; structural ge 34.4 1.9E+02 0.0066 23.8 8.3 59 47-105 20-78 (119)
60 2oqq_A Transcription factor HY 33.8 79 0.0027 23.0 5.0 34 6-39 5-38 (42)
61 3oja_A Leucine-rich immune mol 33.8 3.2E+02 0.011 26.1 16.5 68 207-274 412-479 (487)
62 3tnu_A Keratin, type I cytoske 33.6 1.6E+02 0.0056 24.4 7.8 26 22-47 49-74 (131)
63 4dxr_B Nesprin-1; beta-sandwic 33.0 3.7 0.00013 28.9 -2.0 15 357-371 14-28 (35)
64 1hjb_A Ccaat/enhancer binding 31.3 70 0.0024 25.8 4.9 38 6-43 38-75 (87)
65 1dh3_A Transcription factor CR 31.2 47 0.0016 24.4 3.6 26 5-30 23-48 (55)
66 1ytz_I Troponin I; muscle, THI 30.2 28 0.00095 31.8 2.7 76 5-84 63-147 (182)
67 3a7p_A Autophagy protein 16; c 29.8 3E+02 0.01 24.5 9.9 75 5-89 69-143 (152)
68 1gu4_A CAAT/enhancer binding p 29.7 67 0.0023 25.4 4.5 35 6-40 38-72 (78)
69 2eqb_B RAB guanine nucleotide 29.0 2.5E+02 0.0085 23.3 11.1 31 154-184 31-61 (97)
70 3ka1_A RBCX protein; chaperone 29.0 73 0.0025 27.6 4.9 43 239-284 57-109 (126)
71 1f5n_A Interferon-induced guan 28.2 3.9E+02 0.013 27.6 11.0 49 60-112 534-583 (592)
72 2v66_B Nuclear distribution pr 27.1 1.2E+02 0.0041 25.6 5.8 46 4-53 35-80 (111)
73 1gd2_E Transcription factor PA 27.1 1.3E+02 0.0043 23.4 5.5 52 194-249 18-69 (70)
74 3u06_A Protein claret segregat 26.8 79 0.0027 31.2 5.4 45 4-48 17-61 (412)
75 2jee_A YIIU; FTSZ, septum, coi 26.8 1.6E+02 0.0056 23.7 6.3 18 12-29 28-45 (81)
76 3i00_A HIP-I, huntingtin-inter 26.7 1E+02 0.0036 26.0 5.4 29 63-91 63-91 (120)
77 1l8d_A DNA double-strand break 26.4 2.3E+02 0.008 22.1 9.6 42 5-46 4-45 (112)
78 4ani_A Protein GRPE; chaperone 26.4 1.9E+02 0.0064 26.6 7.5 58 321-378 59-128 (213)
79 3swf_A CGMP-gated cation chann 25.6 1.3E+02 0.0044 24.0 5.4 47 7-53 3-53 (74)
80 1e52_A Excinuclease ABC subuni 24.9 64 0.0022 24.6 3.4 43 69-113 18-60 (63)
81 4etp_A Kinesin-like protein KA 24.9 91 0.0031 30.5 5.5 44 5-48 18-61 (403)
82 1g6u_A Domain swapped dimer; d 24.6 68 0.0023 23.4 3.4 21 165-185 22-42 (48)
83 2yy0_A C-MYC-binding protein; 24.6 75 0.0026 23.4 3.7 32 321-352 19-50 (53)
84 2zdi_C Prefoldin subunit alpha 24.2 1.3E+02 0.0045 25.2 5.7 39 73-111 96-134 (151)
85 3ci9_A Heat shock factor-bindi 24.2 86 0.0029 23.0 3.9 30 19-48 14-47 (48)
86 2lw1_A ABC transporter ATP-bin 23.4 1.9E+02 0.0064 22.5 6.0 47 94-145 27-73 (89)
87 2ke4_A CDC42-interacting prote 22.4 2E+02 0.0068 23.4 6.2 31 203-233 56-89 (98)
88 1jnm_A Proto-oncogene C-JUN; B 21.4 1.7E+02 0.0059 21.4 5.2 50 64-113 11-60 (62)
89 2wt7_A Proto-oncogene protein 21.4 2.5E+02 0.0085 20.7 6.2 42 224-265 17-58 (63)
90 3efg_A Protein SLYX homolog; x 21.0 2E+02 0.007 22.4 5.8 19 71-89 45-63 (78)
91 1zme_C Proline utilization tra 20.9 63 0.0021 23.1 2.6 24 5-28 45-68 (70)
92 1ik9_A DNA repair protein XRCC 20.8 4.8E+02 0.016 23.7 9.5 48 1-48 129-176 (213)
93 3cl3_D NF-kappa-B essential mo 20.7 1.2E+02 0.004 26.6 4.6 23 7-29 26-48 (130)
94 1dh3_A Transcription factor CR 20.3 53 0.0018 24.1 2.1 21 5-25 30-50 (55)
95 3b5n_D Protein transport prote 20.3 1.9E+02 0.0065 21.7 5.3 39 207-245 8-46 (64)
96 3nr7_A DNA-binding protein H-N 20.0 3.4E+02 0.012 21.7 7.5 67 49-132 14-80 (86)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.67 E-value=0.019 Score=48.17 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=27.4
Q ss_pred HHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047021 207 LEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQNEELRG 279 (388)
Q Consensus 207 le~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEnQvqDclkQNeeLr~ 279 (388)
+..++..+...+..++.....+-.+|+.-..+|+.+...-..+...+.....--..++.++.++-.....++.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (284)
T 1c1g_A 179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444333333333333333333333333333333333333333333444333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.62 E-value=0.00013 Score=79.46 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred hhHHhhHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHhhh
Q 047021 321 NEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNG 360 (388)
Q Consensus 321 te~l~LK~eL~kEqsRseaLsaqv~qLsAeL~ra~QA~n~ 360 (388)
+++..|..+|..+..+...+..+...|..++.........
T Consensus 1123 ~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555444444333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.30 E-value=0.058 Score=45.18 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=4.0
Q ss_pred HHHHHHHHhHH
Q 047021 76 QLRTLKKRLKE 86 (388)
Q Consensus 76 QLR~~kkRlkE 86 (388)
++..++.++..
T Consensus 84 ~~~~~~~~~~~ 94 (284)
T 1c1g_A 84 DVASLNRRIQL 94 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.66 E-value=0.0041 Score=67.87 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=43.6
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHHhH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLK 85 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkRlk 85 (388)
+..+++++.+++.....+...+.+.+.+...|..+++++.. ....++..+.+..-+.......++++..++..++.++.
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~-~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE-KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666655666666666666666665553 22344444544444444444444555555555555554
Q ss_pred HHHHH
Q 047021 86 EAEEE 90 (388)
Q Consensus 86 EAEEE 90 (388)
+.+++
T Consensus 938 e~ee~ 942 (1184)
T 1i84_S 938 EEEER 942 (1184)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44443
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.36 E-value=0.59 Score=42.74 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 047021 70 REDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQL 144 (388)
Q Consensus 70 reDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~s~~~~~g~s~~~~~~lekEl~~l~~~l 144 (388)
...+..++-.++..+.+.+.+.-+.|.|.+.+++-++..+.+.++.+ ++.++.+|.+||..++.+.
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------~~kE~~aL~kEie~~~~~i 106 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------SERELRSLNIEEDIAKERS 106 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------SSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888999999999999999999999999995421 6789999999999666443
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.64 E-value=1.2 Score=54.43 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=93.5
Q ss_pred HHHHhhHHHHHHhHHhh---hhHHHHHHhhHHHHHHhhHhhhhhhh---hHHHHhhhhhhhhhhHHHhhhhHHHHHHHHH
Q 047021 8 DFQKKNAELEEKNSILS---SKLQVKEVESESLQTRINELEQNTVP---SLRKALKDVAMEKDAAVVAREDLSAQLRTLK 81 (388)
Q Consensus 8 ~lq~~~~~le~~n~~L~---sk~~~k~~~~~~L~~~Lnd~e~n~v~---slrkaL~~v~mEkDaA~vareDl~AQLR~~k 81 (388)
=|.+|..++....+.|. .||.+....++.|+.+|...+....- ...+.|..|..+...|-.-|.
T Consensus 1907 ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~---------- 1976 (3245)
T 3vkg_A 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQK---------- 1976 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 35677777777777765 68888888999999998866544431 223344444433322221111
Q ss_pred HHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047021 82 KRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQQERKQLTEE 161 (388)
Q Consensus 82 kRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~s~~~~~g~s~~~~~~lekEl~~l~~~lqqes~lrqqeqqrla~E 161 (388)
++++++..+++. -++++.++..++. ...-+-|++|--+.+..++.++...+.+|..-....+.-.++++.=
T Consensus 1977 ----~v~~~~~~~~~~----~~ei~~~k~~~e~-dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 1977 ----DARELQVQLDVR----NKEIAVQKVKAYA-DLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATY 2047 (3245)
T ss_dssp ----HHHHHHHHHHHH----HHHHHHHHHHHHH-CC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH----HHHHHHHHHHHHH-HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222221 2333444443322 2222225577777788888888888888887666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 047021 162 QARISVLMSEKQELEEKLVMFSRK 185 (388)
Q Consensus 162 q~~~a~l~aEkqeLeekl~~~~~~ 185 (388)
+...+.+++||+.|+..+.....+
T Consensus 2048 ~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2048 KEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887776544
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.32 E-value=0.92 Score=49.90 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=10.2
Q ss_pred HHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhh---hhhHHHHhhhh
Q 047021 7 KDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNT---VPSLRKALKDV 59 (388)
Q Consensus 7 ~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~---v~slrkaL~~v 59 (388)
..|.+.+..||.+...|+.++++++.++..|+.++.+++... ++.|++.+.++
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~l 972 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888888888877665432 45566555443
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.57 E-value=1.2 Score=37.32 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhhhhcchhhHHHHHHHHhHHHHHHHHHHhhHHH
Q 047021 158 LTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQK 227 (388)
Q Consensus 158 la~Eq~~~a~l~aEkqeLeekl~~~~~~~se~~~~~a~~k~~S~eDkekle~Ql~dma~~VeRLE~SRqK 227 (388)
++.-..+...|.+.+.+|+.++.-+...-.+.... ...+ ...+.|++.++.+|-..++-++.+|+|
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~---~~~L-~~~kkkle~e~~~Lk~~led~e~~l~K 129 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM---NAEL-TAKKRKLEDECSELKRDIDDLELTLAK 129 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 66666777788888888888888876554332111 1112 355677777777777778878877764
No 9
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.67 E-value=0.13 Score=52.79 Aligned_cols=130 Identities=23% Similarity=0.330 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------chhhhhhhhhhhhcchhhHH
Q 047021 136 ELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFSRK----------ASEEVSNAAASKAFSVEDKE 205 (388)
Q Consensus 136 El~~l~~~lqqes~lrqqeqqrla~Eq~~~a~l~aEkqeLeekl~~~~~~----------~se~~~~~a~~k~~S~eDke 205 (388)
|++..|++-..+...++.|+++|+.|...-.....++++|++.+..+-.. +-+.+...+-......++++
T Consensus 301 e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56677788888999999999999977666666666777777777664422 22233333333344567777
Q ss_pred HHHHHHhHHHHHHHHHHh-------hHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047021 206 KLEKQLHDMAVVVERLES-------SRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLK 272 (388)
Q Consensus 206 kle~Ql~dma~~VeRLE~-------SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEnQvqDclk 272 (388)
.|++.-.+.-.+..||+- .|..|-.+|+-=-.+|.+|.++-.. --.-+.+|...+...=.
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVEL-------KDSETRRLQEEVEDARR 447 (575)
T ss_dssp --------------------------------------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 777777777777777665 4667888899888999999887543 22356689887766433
No 10
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.89 E-value=1.8 Score=35.10 Aligned_cols=71 Identities=18% Similarity=0.396 Sum_probs=50.5
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHH
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKR 83 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkR 83 (388)
..|.-|+..|..||.+...++.+ . ...+.+.=...+..||+-+.+++.||....+-.+.|.+.+--+|+|
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~-------~---~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ-------G---KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------c---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555554444322 1 2345566667788999999999999999999999999998888887
Q ss_pred h
Q 047021 84 L 84 (388)
Q Consensus 84 l 84 (388)
|
T Consensus 93 L 93 (93)
T 3s4r_A 93 L 93 (93)
T ss_dssp C
T ss_pred C
Confidence 5
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.34 E-value=5 Score=39.28 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=21.5
Q ss_pred hhhhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHH
Q 047021 62 EKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAEL 105 (388)
Q Consensus 62 EkDaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEl 105 (388)
.+|...-.++++......++.+.+..+.+-.+.+.+......++
T Consensus 496 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (597)
T 3oja_B 496 PKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKET 539 (597)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcch
Confidence 33333334455555555555555555555444444444433333
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.19 E-value=11 Score=36.85 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCC
Q 047021 75 AQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSL 117 (388)
Q Consensus 75 AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~ 117 (388)
.+...+++++++..+...+..++.+.++++++.|++....|..
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444677777777777778888899999999999988866643
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.12 E-value=37 Score=37.53 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=13.5
Q ss_pred hhhhHHHHHhhHHHHHHhHHhhhhHH----HHHHhhHHHHHHhhHhhh
Q 047021 3 LSQLKDFQKKNAELEEKNSILSSKLQ----VKEVESESLQTRINELEQ 46 (388)
Q Consensus 3 ~~~v~~lq~~~~~le~~n~~L~sk~~----~k~~~~~~L~~~Lnd~e~ 46 (388)
-..|.+|+.+..+.+++|..|..++. .+..++..|++++++++.
T Consensus 927 E~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777888887777754 455667777777777766
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=81.56 E-value=16 Score=29.41 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhhhhhhcchhhHHHHHHHHhHHHHHHHHHHhhHHHHHHHhhhh
Q 047021 156 KQLTEEQARISVLMSEKQELEEKLVMFSRKASEEVSNAAASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQ 235 (388)
Q Consensus 156 qrla~Eq~~~a~l~aEkqeLeekl~~~~~~~se~~~~~a~~k~~S~eDkekle~Ql~dma~~VeRLE~SRqKLL~EID~Q 235 (388)
-|+|.=..++..|+++-..|+.++..+..+.++ .+...++..|.+|-..|..+..-+.+|..|||+=
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~~-------------~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQLKGQGKS-------------RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777888888888898888777643211 2445678889999999999999999999999998
Q ss_pred hHHHHHH
Q 047021 236 SSEIERL 242 (388)
Q Consensus 236 S~EIErL 242 (388)
..+++++
T Consensus 83 ~~~~~~~ 89 (93)
T 3s4r_A 83 AEDIMRL 89 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7788775
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.42 E-value=1.2e+02 Score=37.61 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-------hhhhhhhhhhcchhhHHHHHH
Q 047021 155 RKQLTEEQARISVLMSEKQELEEKLVMFSRKASE-------EVSNAAASKAFSVEDKEKLEK 209 (388)
Q Consensus 155 qqrla~Eq~~~a~l~aEkqeLeekl~~~~~~~se-------~~~~~a~~k~~S~eDkekle~ 209 (388)
+.|+.....-+..|-.|+.-=.+.+..+...-.. +++-.+--..|+.+-|..+-+
T Consensus 2069 ~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~ 2130 (3245)
T 3vkg_A 2069 KNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMR 2130 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555555566666665555555554433221 222222334577777766643
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.03 E-value=52 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=11.3
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHh
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVE 33 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~ 33 (388)
|+.+..+...++.....|..+++..+.+
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~ 40 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALND 40 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444444444444444443333333333
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.40 E-value=46 Score=26.90 Aligned_cols=67 Identities=31% Similarity=0.359 Sum_probs=43.8
Q ss_pred HHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHH
Q 047021 218 VERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWE---NQVK-DCLKQNEELRGILEKL 284 (388)
Q Consensus 218 VeRLE~SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWE---nQvq-DclkQNeeLr~lLekl 284 (388)
++.||+-=|-++..|-..--|||-|=++|..|+.-.+++.+=...-. +|++ +--.=.++|+++|.|+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666777777778999999999999999988776322211 1222 2223356777777763
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.00 E-value=26 Score=31.61 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047021 128 DHVQTLEKELATLKSQLQQESQLRQQERKQLTEEQARISVLMSEKQELEEKLVMFS 183 (388)
Q Consensus 128 ~~~~~lekEl~~l~~~lqqes~lrqqeqqrla~Eq~~~a~l~aEkqeLeekl~~~~ 183 (388)
.+-..|++++.+|+++|.+|..-|.+.-+..++=+.++.+|..|...+...+..+.
T Consensus 62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999988888776653
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=66.93 E-value=36 Score=28.99 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 047021 115 GSLGGISSMGISPDHVQTLEKELATLKSQLQQ 146 (388)
Q Consensus 115 ~~~s~~~~~g~s~~~~~~lekEl~~l~~~lqq 146 (388)
++.||+.|-|--.+.+ ++.+|+.+|.-
T Consensus 9 ~~~~~~~~~~~~~~~~-----ei~~L~~~L~~ 35 (110)
T 2v4h_A 9 HHSSGLVPRGSHMASM-----QLEDLRQQLQQ 35 (110)
T ss_dssp ----CCCCTTCCSSCC-----HHHHHHHHHHH
T ss_pred ccccCCCcchhHhhHH-----HHHHHHHHHHH
Confidence 4677888766322222 45556555554
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=66.06 E-value=56 Score=27.10 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=46.8
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKK 82 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kk 82 (388)
.+.+|.+..-.+..+|..|..++.......+.+..+..+ |.+...++..-+..+--.=|.+.++|-||-+++-+++.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~-E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE-EMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666666666555542 22333333333333333337778888888888877764
No 21
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=62.45 E-value=57 Score=25.87 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=50.7
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKR 83 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkR 83 (388)
+.+|....-.+-.+|..|..+++......+-+.....+ |.+...++..-+..+-=.-|.|..+|-||-+++-+++.-
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~-E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE-EMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776666666655542 444444444444444444478888899999999887653
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.16 E-value=14 Score=27.31 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.8
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRI 41 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~L 41 (388)
.+.+|+.+...|+.+|..|.+++.....++..|..-|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678889999999999999998888888777776543
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=59.29 E-value=16 Score=33.73 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=40.1
Q ss_pred HhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhh---hHHHHhhhhhh
Q 047021 11 KKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVP---SLRKALKDVAM 61 (388)
Q Consensus 11 ~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~---slrkaL~~v~m 61 (388)
.-.+.|-.+|..|+-+++++..++..|+.+|..++.+.++ ++.|.+.+|-+
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i 73 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEV 73 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhH
Confidence 3356778899999999999999999999999999988863 34455544443
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=57.12 E-value=76 Score=25.62 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHhhhHhhHHHHH
Q 047021 76 QLRTLKKRLKEAEEEQYRAEEDAAALR 102 (388)
Q Consensus 76 QLR~~kkRlkEAEEEQyRAEEDaAaLR 102 (388)
+|-..+..|.+++.---.||-+.++|-
T Consensus 66 ~L~ea~~kLee~ek~~~~aE~ev~~L~ 92 (101)
T 3u1c_A 66 ELHKSEDSLLFAEENAAKAESEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544445555555553
No 25
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=55.23 E-value=12 Score=25.39 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=19.7
Q ss_pred HHHHHhhHHHHHHhHHhhhhHHHH
Q 047021 7 KDFQKKNAELEEKNSILSSKLQVK 30 (388)
Q Consensus 7 ~~lq~~~~~le~~n~~L~sk~~~k 30 (388)
.-|+++|+.||+..+.|..|++..
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999888888887654
No 26
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=54.94 E-value=8.6 Score=31.07 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=20.8
Q ss_pred hhhhhHHHHHhhHHHHHHhHHhhh
Q 047021 2 LLSQLKDFQKKNAELEEKNSILSS 25 (388)
Q Consensus 2 l~~~v~~lq~~~~~le~~n~~L~s 25 (388)
|-.++++|..+|.+||.||..|..
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999998864
No 27
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=54.13 E-value=24 Score=25.83 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHH
Q 047021 99 AALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELAT 139 (388)
Q Consensus 99 AaLRAEln~lQqq~~~~~~s~~~~~g~s~~~~~~lekEl~~ 139 (388)
|+|..||.+|.. -|.||+++-+|+-|++.
T Consensus 3 aalkselqalkk------------egfspeelaaleselqa 31 (48)
T 1g6u_A 3 AALKSELQALKK------------EGFSPEELAALESELQA 31 (48)
T ss_dssp HHHHHHHHHHHH------------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------cCCCHHHHHHHHHHHHH
Confidence 677788776653 35577876665555553
No 28
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.07 E-value=11 Score=27.45 Aligned_cols=18 Identities=50% Similarity=0.767 Sum_probs=9.8
Q ss_pred hhhHHHHHhhHHHHHHhH
Q 047021 4 SQLKDFQKKNAELEEKNS 21 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~ 21 (388)
.++++|+.+|++||+...
T Consensus 10 ~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 10 NRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666665555433
No 29
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=53.97 E-value=59 Score=25.68 Aligned_cols=60 Identities=13% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047021 122 SMGISPDHVQTLEKELATLKSQLQQESQLRQ----------------QERKQLTEEQARISVLMSEKQELEEKLVMFS 183 (388)
Q Consensus 122 ~~g~s~~~~~~lekEl~~l~~~lqqes~lrq----------------qeqqrla~Eq~~~a~l~aEkqeLeekl~~~~ 183 (388)
..+-+.+.+..++.++..++..|......|. +.+ ++.-..+...|.+.|++|+.++.-+.
T Consensus 8 ~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q--l~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 8 SIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS--MKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=52.19 E-value=25 Score=26.38 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.9
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTR 40 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~ 40 (388)
+..+|+.+..+|+.+|..|..++.....++..|-.-
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888887776543
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=52.02 E-value=97 Score=26.35 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=11.6
Q ss_pred HHHHhhhhhhhhhhHHHhhhhHHH
Q 047021 52 LRKALKDVAMEKDAAVVAREDLSA 75 (388)
Q Consensus 52 lrkaL~~v~mEkDaA~vareDl~A 75 (388)
.++.|.+|.|=+-=+-|=|+|.-+
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444455555444444444555444
No 32
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=49.83 E-value=29 Score=30.16 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=43.9
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhh-hhHHHHhhhhhhhhhhHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTV-PSLRKALKDVAMEKDAAV 67 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v-~slrkaL~~v~mEkDaA~ 67 (388)
-.++|..+...||++.=-|..++.-..-++..|-.+.||+..+.+ | +|+.|.|--||-.
T Consensus 66 ~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKfkKP----~LkkVr~sad~ml 125 (133)
T 1j1d_C 66 LARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRP----TLRRVRISADAMM 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcccCCC----ccCccccCHHHHH
Confidence 456778888888999888889998889999999999999986654 5 6777888777744
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=49.83 E-value=21 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=21.7
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRIN 42 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Ln 42 (388)
+|++|+.+..+|+..+..|....+.....+..|..+|+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776666555444444444444444443
No 34
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=49.19 E-value=83 Score=26.03 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=48.0
Q ss_pred hhhhHHhhHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHhhhcc
Q 047021 319 HKNEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKMKQDG 383 (388)
Q Consensus 319 ~~te~l~LK~eL~kEqsRseaLsaqv~qLsAeL~ra~QA~n~L~Rly~PvL~~IEsrLikmkq~~ 383 (388)
..+|+..|+..+-.=.+..++|-.+...|-..|.-+.+-|..=..-|...+..+|.-|.++|+|.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566666666555555566666666677777777777777777788889999999999999874
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.21 E-value=35 Score=25.42 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=28.5
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRI 41 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~L 41 (388)
.+.+|+.+...|+.+|..|..+|.....++..|..-|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999988888877777666665444
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.10 E-value=33 Score=29.43 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=28.6
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhh
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTV 49 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v 49 (388)
.++.++.+.+..|-.++-.++.++++..-+++.|.++++.++.+.+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666666666666666666666554
No 37
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.32 E-value=16 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=26.7
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTR 40 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~ 40 (388)
.+.+|+.+...|+.+|..|.+++.....++..|..-
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888887777766665443
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=46.07 E-value=95 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHH
Q 047021 73 LSAQLRTLKKRLKEAEEEQYRAEEDAAALRAEL 105 (388)
Q Consensus 73 l~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEl 105 (388)
+..+|..++..|.+++..--.||-+.|+|---|
T Consensus 63 ~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666555555666666664433
No 39
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=44.43 E-value=33 Score=31.22 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=40.9
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhh-hhHHHHhhhhhhhhhhHHH--------hhhhHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTV-PSLRKALKDVAMEKDAAVV--------AREDLSA 75 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v-~slrkaL~~v~mEkDaA~v--------areDl~A 75 (388)
-.++|..++..||++.=-|..++.-..-++..|-.+.||+..+.+ |.| +.|.|=-|+-.- +--|+-|
T Consensus 66 ~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKFkKP~L----kkV~~s~d~m~~allg~k~~~~~d~Ra 141 (180)
T 1j1e_C 66 LARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTL----RRVRISADAMMQALLGARAKESLDLRA 141 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCCCHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcccccch----hhhcccHHHHHHHHHHhhHhhhhhHHH
Confidence 456778888888999888888888889999999999999987654 655 456665565322 1458999
Q ss_pred HHHHHHHHh
Q 047021 76 QLRTLKKRL 84 (388)
Q Consensus 76 QLR~~kkRl 84 (388)
||.+.||--
T Consensus 142 nLK~Vkke~ 150 (180)
T 1j1e_C 142 HLKQVKKED 150 (180)
T ss_dssp ---------
T ss_pred hcccccccc
Confidence 999998865
No 40
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=43.92 E-value=1.5e+02 Score=25.13 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=15.0
Q ss_pred HHhHHhhhhHHHHHHhhHHHHHHhhHhh
Q 047021 18 EKNSILSSKLQVKEVESESLQTRINELE 45 (388)
Q Consensus 18 ~~n~~L~sk~~~k~~~~~~L~~~Lnd~e 45 (388)
..+..|.++++.....++.|..+++.+.
T Consensus 50 ~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 50 KRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666555443
No 41
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=43.29 E-value=14 Score=33.07 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 047021 239 IERLFEENSSLSSSYQESMGIAKHWENQVKDCLK 272 (388)
Q Consensus 239 IErLf~ENs~Lsss~qea~~iaaqWEnQvqDclk 272 (388)
|+.||-||..|.--+=++++.-+.| |.||+.
T Consensus 76 l~~L~~E~~~LA~RIM~VRehlae~---v~eflp 106 (155)
T 3hyb_A 76 IEELFLEKPDLALRIMTVREHIAEE---IAEFLP 106 (155)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHH---HGGGHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 6778889999998888888888888 888863
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=43.18 E-value=67 Score=26.67 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047021 129 HVQTLEKELATLKSQLQQESQLRQQ--------ERKQLTEEQARISVLMSEKQELEEKLVMFSRK 185 (388)
Q Consensus 129 ~~~~lekEl~~l~~~lqqes~lrqq--------eqqrla~Eq~~~a~l~aEkqeLeekl~~~~~~ 185 (388)
++..|..++...+..+-+..+|.+| ..+|.++|. +-.||++|.+.+..+-+.
T Consensus 24 ~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREk-----l~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 24 LIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREK-----LVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHH
Confidence 4566666777777777788888887 667777776 556788888888776654
No 43
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.74 E-value=48 Score=26.59 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=16.5
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHH
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESL 37 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L 37 (388)
.+++.++-+|.+||....-|.-.++.-..+.+.+
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~ 46 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERA 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444444333333
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.00 E-value=45 Score=26.47 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=24.6
Q ss_pred HHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhh
Q 047021 14 AELEEKNSILSSKLQVKEVESESLQTRINELEQ 46 (388)
Q Consensus 14 ~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~ 46 (388)
...++..+.|...|++++.++..|+..||.+..
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566777888888888888888888887643
No 45
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.71 E-value=54 Score=25.31 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=22.0
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINE 43 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd 43 (388)
.+++.++++..+|.+...|+.||+..+.+.+....+|.+
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666666555555555555543
No 46
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.10 E-value=55 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=27.4
Q ss_pred hhhhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHH
Q 047021 2 LLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTR 40 (388)
Q Consensus 2 l~~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~ 40 (388)
+..+++.++.+|.+||....-|.-.++.-..+.+.+...
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888887777777666555555443
No 47
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.43 E-value=67 Score=26.08 Aligned_cols=65 Identities=23% Similarity=0.387 Sum_probs=29.0
Q ss_pred HhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHH
Q 047021 22 ILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAA 99 (388)
Q Consensus 22 ~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaA 99 (388)
-|+|-++.-.-.++++..+|+...--.+ ++.+=|+ |+ ..=-.+|.+.++.+++++.+ .+++-++|
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni-~~eskL~------ea-e~rn~eL~~e~~~l~~~~ee-----lq~~~~~~ 78 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQ-NFASQLR------EA-EARNRDLEAHVRQLQERMEL-----LQAEGATA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HH-HHHHHHHHHHHHHHHHHHHH-----HHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HH-HHHHHHHHHHHHHHHHHHHH-----HHccchhh
Confidence 4555555555556666666653221111 1111221 11 11235667777777777766 45554444
No 48
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=40.37 E-value=40 Score=26.27 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=31.2
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHH
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQ 38 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~ 38 (388)
++|+.|=+-|..|-.|.+.++++|++..-+|-.|.
T Consensus 27 AkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 27 AKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 57899999999999999999999999988887664
No 49
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.24 E-value=2.2e+02 Score=25.96 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHH
Q 047021 71 EDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELN 106 (388)
Q Consensus 71 eDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln 106 (388)
|||-.+-|.+---+..-|--=-.|=|--|-|-.||.
T Consensus 119 DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333333333344444555555554
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.24 E-value=1.1e+02 Score=25.44 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=38.8
Q ss_pred hHHhhHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHhhhcc
Q 047021 322 EFLALKGQLAKEQSRAEALSAQVLQLSAQLQQTTQAYNGLVRLYKPVLRNIESSLIKMKQDG 383 (388)
Q Consensus 322 e~l~LK~eL~kEqsRseaLsaqv~qLsAeL~ra~QA~n~L~Rly~PvL~~IEsrLikmkq~~ 383 (388)
|+..|+..+-.=.+..+++-.+...|-..|..+.+-|..=..-|...+..+|.-|.++|+|.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333344455555556666666666666666778888999999999998874
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.87 E-value=66 Score=23.82 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=31.6
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINEL 44 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~ 44 (388)
++.+|+..+..|-..|.+|-.-+...-.++..|...|+.+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557788888888888888888888888888888777765
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.50 E-value=1.8e+02 Score=24.05 Aligned_cols=103 Identities=22% Similarity=0.258 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 047021 73 LSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQQESQLRQ 152 (388)
Q Consensus 73 l~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~s~~~~~g~s~~~~~~lekEl~~l~~~lqqes~lrq 152 (388)
+-..+..++..+...+..-..-|+.-..|..+.|.|+.+.-+-+. .....+.-...|..+-..=.--.+
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~-----------~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-----------NLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888889999999999999999853211 111222222222222222122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 047021 153 QERKQLTEEQARISVLMSEKQELEEKLVMFSRKA 186 (388)
Q Consensus 153 qeqqrla~Eq~~~a~l~aEkqeLeekl~~~~~~~ 186 (388)
.-..|+..+-.+.+.|.++|..|+..+..+....
T Consensus 87 el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 87 EMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888888999999998888887766543
No 53
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=35.86 E-value=2e+02 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=38.4
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhh
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTV 49 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v 49 (388)
..-|+.++..++++...++..+..|..++..|.+.+.+...++-
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~ 347 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTH 347 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45789999999999999999999999999999999987766543
No 54
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.64 E-value=1.3e+02 Score=24.53 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhHHHHHHhhh
Q 047021 217 VVERLESSRQKLLMEIDNQSSEIERLFEE 245 (388)
Q Consensus 217 ~VeRLE~SRqKLL~EID~QS~EIErLf~E 245 (388)
+-|.|.+-|.+|+.|||....||++|=.+
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999998654
No 55
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=35.56 E-value=21 Score=28.67 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhh
Q 047021 15 ELEEKNSILSSKLQVKEVESESLQTRINELEQ 46 (388)
Q Consensus 15 ~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~ 46 (388)
+|+.++..+..|++..+.+|..|..++.++++
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56777888888888888888877766554443
No 56
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.46 E-value=1.9e+02 Score=23.87 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=10.7
Q ss_pred HhhhhHHHHHHhhHHHHHHhhHhhhh
Q 047021 22 ILSSKLQVKEVESESLQTRINELEQN 47 (388)
Q Consensus 22 ~L~sk~~~k~~~~~~L~~~Lnd~e~n 47 (388)
-|..+|+...-.+.+|+..|.|.+..
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.15 E-value=1.5e+02 Score=23.81 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=29.6
Q ss_pred hhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 047021 64 DAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMG 124 (388)
Q Consensus 64 DaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~s~~~~~g 124 (388)
.||..+|+---..-..+..|..+-+.|=.+=......|..|+..|..-.+..+..-..++|
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~~ 85 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSG 85 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhcccc
Confidence 3566666544444444555555544444444444556777777777777766555444555
No 58
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.41 E-value=1.1e+02 Score=24.87 Aligned_cols=58 Identities=38% Similarity=0.433 Sum_probs=39.4
Q ss_pred hhhhhhhhhhHHHh-----hhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHh
Q 047021 56 LKDVAMEKDAAVVA-----REDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAM 113 (388)
Q Consensus 56 L~~v~mEkDaA~va-----reDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~ 113 (388)
|+=++||||.---. -|||.--++-++-|+-|.|.|----|----+-.+||.+||++..
T Consensus 2 LKL~~~Ekd~~~~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 2 LKLVGMEKEQREQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34466777764332 36999999999999999999977777777888899999999984
No 59
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.40 E-value=1.9e+02 Score=23.78 Aligned_cols=59 Identities=20% Similarity=0.413 Sum_probs=31.5
Q ss_pred hhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHH
Q 047021 47 NTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAEL 105 (388)
Q Consensus 47 n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEl 105 (388)
.++..||+-|.+++.|+....+-.+.+-..+--.|.|..+.-.-...+|-|-..||..+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 34455666666666666666666665555555556655443333333444444444333
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.81 E-value=79 Score=22.97 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=27.2
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQT 39 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~ 39 (388)
|-+|+.+-.+|+..|..|..++-|...+|..|.+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5678888888888888888888888887776654
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.78 E-value=3.2e+02 Score=26.10 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=48.8
Q ss_pred HHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 047021 207 LEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQN 274 (388)
Q Consensus 207 le~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEnQvqDclkQN 274 (388)
+.+....+-.|-.+++.-|.+.-.+.+.-+.||++|.+||..+-.-..+......-=..-+||...+-
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 33444445555666777888888889999999999999999998877776665555555556655443
No 62
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.58 E-value=1.6e+02 Score=24.36 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=10.9
Q ss_pred HhhhhHHHHHHhhHHHHHHhhHhhhh
Q 047021 22 ILSSKLQVKEVESESLQTRINELEQN 47 (388)
Q Consensus 22 ~L~sk~~~k~~~~~~L~~~Lnd~e~n 47 (388)
-|..+|+...-.+.+|+..|.|.+..
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333333344444444444443
No 63
>4dxr_B Nesprin-1; beta-sandwich, LINC complex, structural protein; HET: DMU; 2.32A {Homo sapiens} PDB: 4dxs_B*
Probab=33.03 E-value=3.7 Score=28.88 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=12.6
Q ss_pred HhhhhHHHHHHHHhh
Q 047021 357 AYNGLVRLYKPVLRN 371 (388)
Q Consensus 357 A~n~L~Rly~PvL~~ 371 (388)
-.|+++|+|.|||+-
T Consensus 14 ~aNNFARSF~pML~Y 28 (35)
T 4dxr_B 14 LSNNFARSFHPMLRY 28 (35)
T ss_dssp TCCTGGGSSSCEEEE
T ss_pred hhhhHHHHhHHHHhc
Confidence 358999999999863
No 64
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.26 E-value=70 Score=25.82 Aligned_cols=38 Identities=24% Similarity=0.220 Sum_probs=31.2
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINE 43 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd 43 (388)
-.+++.+...|+.+|..|..+|+....++..|..-|-+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999888888888776654
No 65
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.21 E-value=47 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=19.4
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVK 30 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k 30 (388)
+|.+|+.+..+|+.+|..|..++...
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888887777766554
No 66
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=30.23 E-value=28 Score=31.79 Aligned_cols=76 Identities=29% Similarity=0.338 Sum_probs=57.3
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhh-hhHHHHhhhhhhhhhhHHH---h-----hhhHHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTV-PSLRKALKDVAMEKDAAVV---A-----REDLSA 75 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v-~slrkaL~~v~mEkDaA~v---a-----reDl~A 75 (388)
-.++|..++..||++.=-|..++....-++..|-.+.||+..+.+ | +|+.|.|==|+-.- . --|+-|
T Consensus 63 ~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrGKfkKP----~LkkV~~sad~m~kallg~k~k~~~d~Ra 138 (182)
T 1ytz_I 63 LSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRP----PLRRVRMSADAMLRALLGSKHKVNMDLRA 138 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTCSCSSC----SSCCCCCCHHHHHHHHHTTCCCCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHhhhccc----chhhccccHhHHHHHHhCCCchhhhhHHH
Confidence 457888888899999999999999999999999999999987654 7 56667777676222 1 358888
Q ss_pred HHHHHHHHh
Q 047021 76 QLRTLKKRL 84 (388)
Q Consensus 76 QLR~~kkRl 84 (388)
||.+.||--
T Consensus 139 nLK~Vkke~ 147 (182)
T 1ytz_I 139 NLKQVKKED 147 (182)
T ss_dssp CCCCC----
T ss_pred hccccccch
Confidence 888888765
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.83 E-value=3e+02 Score=24.49 Aligned_cols=75 Identities=28% Similarity=0.265 Sum_probs=41.2
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHHh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRL 84 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkRl 84 (388)
.+..|+..++.++.++..|...+.+|...++.+.+.+..+.-. ...+...++.+.-|-+-.| . |-|++.-
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq-~n~lE~kl~kLq~EN~~LV-------~--RWM~rk~ 138 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIE-NNVLQQKLSDLKKEHSQLV-------A--RWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-------H--HHHHHHH
Confidence 3445666666666666666666666666666666666544322 2334444444333332221 1 6677777
Q ss_pred HHHHH
Q 047021 85 KEAEE 89 (388)
Q Consensus 85 kEAEE 89 (388)
+||+.
T Consensus 139 qEAe~ 143 (152)
T 3a7p_A 139 KETEA 143 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 68
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.72 E-value=67 Score=25.41 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=27.1
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTR 40 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~ 40 (388)
..+++.+..+|+.+|..|..+++....++..|..-
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999988888777777666543
No 69
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.05 E-value=2.5e+02 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047021 154 ERKQLTEEQARISVLMSEKQELEEKLVMFSR 184 (388)
Q Consensus 154 eqqrla~Eq~~~a~l~aEkqeLeekl~~~~~ 184 (388)
.+.+|++|..+-....+++..++.-+-.+|.
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666677777666666653
No 70
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=29.04 E-value=73 Score=27.64 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Q 047021 239 IERLFEENSSLSSSYQESMGIAKHWENQVKDCLKQN----------EELRGILEKL 284 (388)
Q Consensus 239 IErLf~ENs~Lsss~qea~~iaaqWEnQvqDclkQN----------eeLr~lLekl 284 (388)
|+.||-||..|.--+=++++.-+.| |.||+..- +-+|.+|+++
T Consensus 57 l~~L~~E~~~LA~RIM~vR~hla~~---v~d~l~eMv~~~I~q~N~e~~Rq~Ler~ 109 (126)
T 3ka1_A 57 LEALFREQPDLGFRILTVREHLAEM---VADYLPEMLRAGIQQANLQQRAQQLERM 109 (126)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998999888888 66776432 3356677653
No 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.21 E-value=3.9e+02 Score=27.62 Aligned_cols=49 Identities=27% Similarity=0.396 Sum_probs=35.5
Q ss_pred hhhhhhHHHhhhhHHHHHHHHHHHhHHHHH-HHhhhHhhHHHHHHHHHHHHHHH
Q 047021 60 AMEKDAAVVAREDLSAQLRTLKKRLKEAEE-EQYRAEEDAAALRAELNSLQQQA 112 (388)
Q Consensus 60 ~mEkDaA~vareDl~AQLR~~kkRlkEAEE-EQyRAEEDaAaLRAEln~lQqq~ 112 (388)
-||+++...-+ -|=|++..+++|-++ =+--=.+.+..|..||+.|+.+.
T Consensus 534 kme~~~~~~~~----e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 534 KMENDRVQLLK----EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 38888887654 367888889988432 22233466889999999999984
No 72
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.14 E-value=1.2e+02 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhhHH
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPSLR 53 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~slr 53 (388)
+.+-.||+.+..|-..+..+..+|-..++.||.|++. +++|..||.
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~----~R~t~~SLe 80 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA----KRATIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHhhHH
No 73
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.09 E-value=1.3e+02 Score=23.41 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=40.0
Q ss_pred hhhhhcchhhHHHHHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhhh
Q 047021 194 AASKAFSVEDKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSSL 249 (388)
Q Consensus 194 a~~k~~S~eDkekle~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~L 249 (388)
+|..+| ++.=+..|.+|=..|..|+..-+.|-.|++.--..|+.|..||..|
T Consensus 18 ~AQRaf----ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 18 AAQRAF----RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566666 5666778888888899999888888888877777888888777654
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.79 E-value=79 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=36.4
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhh
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNT 48 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~ 48 (388)
.++++|+.++..+..++..+..++...+.++..|++.+.|+.-|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 456677777777778888888888888888999999999888774
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.78 E-value=1.6e+02 Score=23.65 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=6.9
Q ss_pred hhHHHHHHhHHhhhhHHH
Q 047021 12 KNAELEEKNSILSSKLQV 29 (388)
Q Consensus 12 ~~~~le~~n~~L~sk~~~ 29 (388)
.+.+|.++|..|..+.++
T Consensus 28 EieELKekN~~L~~e~~e 45 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 76
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.67 E-value=1e+02 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=12.1
Q ss_pred hhhHHHhhhhHHHHHHHHHHHhHHHHHHH
Q 047021 63 KDAAVVAREDLSAQLRTLKKRLKEAEEEQ 91 (388)
Q Consensus 63 kDaA~vareDl~AQLR~~kkRlkEAEEEQ 91 (388)
+|-|.+=-++|-+++-.+.++..+.+.-|
T Consensus 63 ~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q 91 (120)
T 3i00_A 63 RQQAADDCEFLRAELDELRRQREDTEKAQ 91 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44444555555555555544444444443
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.42 E-value=2.3e+02 Score=22.13 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=33.7
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQ 46 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~ 46 (388)
.+.++.+...++..+...|...+.....++..+.+.++.++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777888888888888888888888888888888887765
No 78
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=26.42 E-value=1.9e+02 Score=26.61 Aligned_cols=58 Identities=26% Similarity=0.318 Sum_probs=46.8
Q ss_pred hhHHhhHHHHHHHhhHHHHhHHHHHHHHHHHHHH------------HHHhhhhHHHHHHHHhhHHHHHHH
Q 047021 321 NEFLALKGQLAKEQSRAEALSAQVLQLSAQLQQT------------TQAYNGLVRLYKPVLRNIESSLIK 378 (388)
Q Consensus 321 te~l~LK~eL~kEqsRseaLsaqv~qLsAeL~ra------------~QA~n~L~Rly~PvL~~IEsrLik 378 (388)
.++..|+.++.+-....+.|...++-+-|+..-. ..|.-+|.+-+.||+-|+|.-|.-
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~ 128 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKI 128 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5688888888888888888888888888886432 247778999999999999987753
No 79
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=25.65 E-value=1.3e+02 Score=24.03 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHH----HHhhHhhhhhhhhHH
Q 047021 7 KDFQKKNAELEEKNSILSSKLQVKEVESESLQ----TRINELEQNTVPSLR 53 (388)
Q Consensus 7 ~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~----~~Lnd~e~n~v~slr 53 (388)
++++.|...||...+.|+.++.-.-.+..+-+ +|+..+|.++.|---
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 57899999999999999999998888877766 566788888776433
No 80
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=24.85 E-value=64 Score=24.62 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHh
Q 047021 69 AREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAM 113 (388)
Q Consensus 69 areDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~ 113 (388)
+++++...+..++++.++|-++. -=|.||.+|-+|..|+.+..
T Consensus 18 s~~~~~~~i~~Le~~M~~AA~~l--eFE~AA~lRD~I~~L~~~l~ 60 (63)
T 1e52_A 18 SPKALQQKIHELEGLMMQHAQNL--EFEEAAQIRDQLHQLRELFI 60 (63)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTT--CHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHHh
Confidence 46678888888899888875542 23789999999999987753
No 81
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.85 E-value=91 Score=30.54 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=28.6
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhh
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNT 48 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~ 48 (388)
.+..|+..+..++.+++.+..++...+..+..|++++.++.-|+
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 34455555555666666666666666777777777777776663
No 82
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=24.64 E-value=68 Score=23.44 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 047021 165 ISVLMSEKQELEEKLVMFSRK 185 (388)
Q Consensus 165 ~a~l~aEkqeLeekl~~~~~~ 185 (388)
++.|.+|.|.||.|++++.++
T Consensus 22 laaleselqalekklaalksk 42 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999987654
No 83
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.58 E-value=75 Score=23.36 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.0
Q ss_pred hhHHhhHHHHHHHhhHHHHhHHHHHHHHHHHH
Q 047021 321 NEFLALKGQLAKEQSRAEALSAQVLQLSAQLQ 352 (388)
Q Consensus 321 te~l~LK~eL~kEqsRseaLsaqv~qLsAeL~ 352 (388)
.++..||.++..=+.|.+.|..++-.|++.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999885
No 84
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.23 E-value=1.3e+02 Score=25.15 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHH
Q 047021 73 LSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQ 111 (388)
Q Consensus 73 l~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq 111 (388)
+.--...+++|+..++..--+-+++.+.+++.++.++..
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~ 134 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARK 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666666666666666666666655443
No 85
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=24.18 E-value=86 Score=23.00 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=19.1
Q ss_pred HhHHhhhhHHHHHHh----hHHHHHHhhHhhhhh
Q 047021 19 KNSILSSKLQVKEVE----SESLQTRINELEQNT 48 (388)
Q Consensus 19 ~n~~L~sk~~~k~~~----~~~L~~~Lnd~e~n~ 48 (388)
=..-++.|++++... +|-+-+|+|+||++.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 345566666666554 688889999999875
No 86
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=23.43 E-value=1.9e+02 Score=22.50 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=33.6
Q ss_pred hHhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 047021 94 AEEDAAALRAELNSLQQQAMDGSLGGISSMGISPDHVQTLEKELATLKSQLQ 145 (388)
Q Consensus 94 AEEDaAaLRAEln~lQqq~~~~~~s~~~~~g~s~~~~~~lekEl~~l~~~lq 145 (388)
-+.+-+.|-+++..|+.++....+- ..+++.+..+-.+++.+..+|-
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y-----~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFF-----SQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGG-----GSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccc-----cCCHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998554321 2256778888888887766654
No 87
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.39 E-value=2e+02 Score=23.42 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=24.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHhhHHHH---HHHhh
Q 047021 203 DKEKLEKQLHDMAVVVERLESSRQKL---LMEID 233 (388)
Q Consensus 203 Dkekle~Ql~dma~~VeRLE~SRqKL---L~EID 233 (388)
|..+++.+|.+++.+++.|.....|+ |.|++
T Consensus 56 D~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 56 DPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445889999999999999999775 56653
No 88
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=21.40 E-value=1.7e+02 Score=21.40 Aligned_cols=50 Identities=22% Similarity=0.307 Sum_probs=18.8
Q ss_pred hhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHh
Q 047021 64 DAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAM 113 (388)
Q Consensus 64 DaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~ 113 (388)
-||..+|+-=-.-...+..+..+-+.+--.-......|+.|+..|.+.++
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554444333333333333433333333333344444444444444443
No 89
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.37 E-value=2.5e+02 Score=20.68 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 047021 224 SRQKLLMEIDNQSSEIERLFEENSSLSSSYQESMGIAKHWEN 265 (388)
Q Consensus 224 SRqKLL~EID~QS~EIErLf~ENs~Lsss~qea~~iaaqWEn 265 (388)
||++=...|+.=..+.+.|-.+|..|...+.....--.+|..
T Consensus 17 cR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 17 CRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777788888888888888777655544444443
No 90
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.00 E-value=2e+02 Score=22.42 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHhHHHHH
Q 047021 71 EDLSAQLRTLKKRLKEAEE 89 (388)
Q Consensus 71 eDl~AQLR~~kkRlkEAEE 89 (388)
+.|..+|+.+..|+++.+.
T Consensus 45 d~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 45 ARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3455666666666666553
No 91
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.90 E-value=63 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=17.7
Q ss_pred hhHHHHHhhHHHHHHhHHhhhhHH
Q 047021 5 QLKDFQKKNAELEEKNSILSSKLQ 28 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~sk~~ 28 (388)
.+..|+.++..||..+..|.+.|+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888888888777777654
No 92
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.76 E-value=4.8e+02 Score=23.68 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=34.5
Q ss_pred ChhhhhHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhh
Q 047021 1 WLLSQLKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNT 48 (388)
Q Consensus 1 ~l~~~v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~ 48 (388)
|++..+..++.+|.+|..+|..|...+.......+-+++.=+..|...
T Consensus 129 ~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 129 YALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677888888888888888888877777666666666555555443
No 93
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.69 E-value=1.2e+02 Score=26.59 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHhHHhhhhHHH
Q 047021 7 KDFQKKNAELEEKNSILSSKLQV 29 (388)
Q Consensus 7 ~~lq~~~~~le~~n~~L~sk~~~ 29 (388)
+.|+.||..+++.++.+.+.+++
T Consensus 26 ~~Leek~~~~e~~~~~~~~Elee 48 (130)
T 3cl3_D 26 QALEGRARAASEQARQLESEREA 48 (130)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555555555555444433
No 94
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.26 E-value=53 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=9.1
Q ss_pred hhHHHHHhhHHHHHHhHHhhh
Q 047021 5 QLKDFQKKNAELEEKNSILSS 25 (388)
Q Consensus 5 ~v~~lq~~~~~le~~n~~L~s 25 (388)
+|..|+..|..|..++..|..
T Consensus 30 ~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 30 RVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 95
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=20.26 E-value=1.9e+02 Score=21.69 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhh
Q 047021 207 LEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEE 245 (388)
Q Consensus 207 le~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~E 245 (388)
++.-|..|..+|-||+.-=--+=-|||+|-.=|+|+-+-
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k 46 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEES 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 778899999999999887777778999999999998654
No 96
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.05 E-value=3.4e+02 Score=21.69 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=35.5
Q ss_pred hhhHHHHhhhhhhhhhhHHHhhhhHHHHHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCChh
Q 047021 49 VPSLRKALKDVAMEKDAAVVAREDLSAQLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQAMDGSLGGISSMGISPD 128 (388)
Q Consensus 49 v~slrkaL~~v~mEkDaA~vareDl~AQLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~~~~~~s~~~~~g~s~~ 128 (388)
+.+||-+.+++++|- =+|+...|++.-. |-.+|-+.....-+.-.+.|+.+-.++. .-|++|+
T Consensus 14 iR~LRA~arel~le~------Lee~leKl~~Vve---ERree~~~~~~~~~er~~Kl~~~~e~l~--------~~GI~~e 76 (86)
T 3nr7_A 14 IRTLRAQARESTLET------LEEMLEKLEVVVN---ERREEESAAAAEVEERTRKLQQYREMLI--------ADGIDPN 76 (86)
T ss_dssp HHHHHHHHHTSCHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HTCCCHH
T ss_pred HHHHHHHHHhCCHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHH
Confidence 467777777777652 2444444444322 2222222222333334456777777663 4577887
Q ss_pred hHHH
Q 047021 129 HVQT 132 (388)
Q Consensus 129 ~~~~ 132 (388)
.+..
T Consensus 77 eL~~ 80 (86)
T 3nr7_A 77 ELLN 80 (86)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
Done!