Query 047021
Match_columns 388
No_of_seqs 17 out of 19
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 11:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047021.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047021hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 42.4 53 0.0039 24.3 7.9 97 6-112 3-102 (107)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 39.3 27 0.002 26.4 5.8 37 76-112 89-125 (133)
3 d1e52a_ a.2.9.1 (A:) C-termina 31.6 19 0.0014 25.3 3.3 45 69-116 11-56 (56)
4 d2csba1 a.60.2.4 (A:351-409) T 30.9 14 0.001 26.2 2.5 26 234-259 33-58 (59)
5 d1lrza1 a.2.7.4 (A:245-309) Me 21.6 1.2E+02 0.0087 21.5 6.3 24 68-91 37-60 (65)
6 d1wu9a1 a.245.1.1 (A:191-249) 21.2 42 0.0031 23.8 3.6 42 203-248 2-43 (59)
7 d1uklc_ a.38.1.1 (C:) SREBP-2 16.4 54 0.0039 22.3 3.2 25 4-28 33-57 (61)
8 d1bwva1 c.1.14.1 (A:150-478) R 14.7 76 0.0056 28.3 4.6 37 250-286 267-314 (328)
9 d2p90a1 c.56.8.1 (A:6-274) Hyp 13.3 68 0.005 26.9 3.7 32 253-284 226-257 (269)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 13.0 1.1E+02 0.0082 23.9 4.7 34 11-44 91-124 (129)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.36 E-value=53 Score=24.29 Aligned_cols=97 Identities=19% Similarity=0.251 Sum_probs=54.0
Q ss_pred hHHHHHhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHhhhhhhhh---HHHHhhhhhhhhhhHHHhhhhHHHHHHHHHH
Q 047021 6 LKDFQKKNAELEEKNSILSSKLQVKEVESESLQTRINELEQNTVPS---LRKALKDVAMEKDAAVVAREDLSAQLRTLKK 82 (388)
Q Consensus 6 v~~lq~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~e~n~v~s---lrkaL~~v~mEkDaA~vareDl~AQLR~~kk 82 (388)
|++.-.+...+..+.+.+.++++..+....-...-|+.++. +|. .-|.+-.|-+++|. --+..+|...+-.+..
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~--l~~d~~vyk~vG~vLv~~~~-~e~~~~l~~~~e~l~~ 79 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR--AADDAEVYKSSGNILIRVAK-DELTEELQEKLETLQL 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCTTCCEEEEETTEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcccHHHHHhcchhhcCcH-HHHHHHHHHHHHHHHH
Confidence 45555666666777777777777777666655555554442 111 11333344466663 3446666666666666
Q ss_pred HhHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q 047021 83 RLKEAEEEQYRAEEDAAALRAELNSLQQQA 112 (388)
Q Consensus 83 RlkEAEEEQyRAEEDaAaLRAEln~lQqq~ 112 (388)
+++.-+. .-..++.+++.++...
T Consensus 80 ~i~~l~~-------q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 80 REKTIER-------QEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6655443 3345555666555544
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.33 E-value=27 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Q 047021 76 QLRTLKKRLKEAEEEQYRAEEDAAALRAELNSLQQQA 112 (388)
Q Consensus 76 QLR~~kkRlkEAEEEQyRAEEDaAaLRAEln~lQqq~ 112 (388)
-+..+.+|+++.+..--.-..+.+.+.+.+..+++.+
T Consensus 89 A~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~ 125 (133)
T d1fxkc_ 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777777777665
No 3
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=31.56 E-value=19 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHhHHHHHH-HhhhHhhHHHHHHHHHHHHHHHhcCC
Q 047021 69 AREDLSAQLRTLKKRLKEAEEE-QYRAEEDAAALRAELNSLQQQAMDGS 116 (388)
Q Consensus 69 areDl~AQLR~~kkRlkEAEEE-QyRAEEDaAaLRAEln~lQqq~~~~~ 116 (388)
+.+++...++.+.+..++|-+. +| |.||-+|-+|..|+....+++
T Consensus 11 s~~el~k~i~~Le~~M~~aa~~l~F---E~AA~~RD~I~~l~~~l~~~s 56 (56)
T d1e52a_ 11 SPKALQQKIHELEGLMMQHAQNLEF---EEAAQIRDQLHQLRELFIAAS 56 (56)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTCH---HHHTTHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777766443 33 789999999999999987654
No 4
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=30.93 E-value=14 Score=26.22 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=20.7
Q ss_pred hhhHHHHHHhhhhhhhhhhHHHHHHH
Q 047021 234 NQSSEIERLFEENSSLSSSYQESMGI 259 (388)
Q Consensus 234 ~QS~EIErLf~ENs~Lsss~qea~~i 259 (388)
.--.||||+|+|..---..|..+++|
T Consensus 33 tdleeiermyeegrlseeayraavei 58 (59)
T d2csba1 33 TDLEEIERMYEEGRLSEEAYRAAVEI 58 (59)
T ss_dssp SCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcccccHHHHHHHhhc
Confidence 34579999999987666788888776
No 5
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=21.56 E-value=1.2e+02 Score=21.47 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.2
Q ss_pred HhhhhHHHHHHHHHHHhHHHHHHH
Q 047021 68 VAREDLSAQLRTLKKRLKEAEEEQ 91 (388)
Q Consensus 68 vareDl~AQLR~~kkRlkEAEEEQ 91 (388)
.-+.+|.-||.+..+|+.||.+=+
T Consensus 37 nk~~el~~Q~~s~~~ki~Ea~~li 60 (65)
T d1lrza1 37 NKRDNLQQQLDANEQKIEEGKRLQ 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999998754
No 6
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=42 Score=23.78 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=30.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHhhhhhh
Q 047021 203 DKEKLEKQLHDMAVVVERLESSRQKLLMEIDNQSSEIERLFEENSS 248 (388)
Q Consensus 203 Dkekle~Ql~dma~~VeRLE~SRqKLL~EID~QS~EIErLf~ENs~ 248 (388)
+...|-.|+.+|...|+.||..|+=-..= =-.||=|..+|.+
T Consensus 2 e~~~L~~ei~elk~~v~~lEkERdFYF~K----LRdIEilcQ~~e~ 43 (59)
T d1wu9a1 2 EAAELMQQVNVLKLTVEDLEKERDFYFGK----LRNIELICQENEG 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCccc
Confidence 45678899999999999999999733211 1356766666643
No 7
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.42 E-value=54 Score=22.31 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.3
Q ss_pred hhhHHHHHhhHHHHHHhHHhhhhHH
Q 047021 4 SQLKDFQKKNAELEEKNSILSSKLQ 28 (388)
Q Consensus 4 ~~v~~lq~~~~~le~~n~~L~sk~~ 28 (388)
..|+.|++.+..|++++..|.+..+
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999988877654
No 8
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=14.74 E-value=76 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHh
Q 047021 250 SSSYQESMGIAKHWENQ-----------VKDCLKQNEELRGILEKLRT 286 (388)
Q Consensus 250 sss~qea~~iaaqWEnQ-----------vqDclkQNeeLr~lLeklR~ 286 (388)
..+.++|++.+.++-+. +.++.|...||+.-||+|--
T Consensus 267 a~A~RqA~eA~~~g~~~~~~~~~~~~e~l~e~ak~~~eL~~Ale~Wg~ 314 (328)
T d1bwva1 267 ATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKD 314 (328)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccchhhhhhchHHHHHHHhcCHHHHHHHHHhcC
Confidence 35677888888777664 89999999999999999853
No 9
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=13.32 E-value=68 Score=26.85 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047021 253 YQESMGIAKHWENQVKDCLKQNEELRGILEKL 284 (388)
Q Consensus 253 ~qea~~iaaqWEnQvqDclkQNeeLr~lLekl 284 (388)
+.+-.+-|..||.++++-+.||+++..++++|
T Consensus 226 ~~~L~e~Ae~~e~~i~~l~e~~~e~~~~v~~L 257 (269)
T d2p90a1 226 LLALERDAEKVHRQLMEQTEESSEIQRVVGAL 257 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 33444556789999999999999999988865
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.05 E-value=1.1e+02 Score=23.85 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=24.2
Q ss_pred HhhHHHHHHhHHhhhhHHHHHHhhHHHHHHhhHh
Q 047021 11 KKNAELEEKNSILSSKLQVKEVESESLQTRINEL 44 (388)
Q Consensus 11 ~~~~~le~~n~~L~sk~~~k~~~~~~L~~~Lnd~ 44 (388)
++..+|+++|+....++.++-.+.+.|-++++.+
T Consensus 91 ~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~ 124 (129)
T d1ykhb1 91 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777766643
Done!