BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047022
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 119/272 (43%), Gaps = 26/272 (9%)
Query: 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVK 181
N LT V YD S++ FF LFLD + TYSCA F+ + LE QI K+ + + K+
Sbjct: 3 NDLTPHFEDVQAHYDLSDD-FFRLFLDPTQTYSCAHFEREDMTLEEAQIAKIDLALGKLG 61
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241
L G +L+IGCGWG + Q G+TLS+ Q + + E DT V
Sbjct: 62 LQPGMTLLDIGCGWGATMRRAIAQYDVNVVGLTLSKNQAAHVQKSFDE---MDTPRDRRV 118
Query: 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCST 297
+ E F + G E GHD + F+ +L +G+ + +
Sbjct: 119 LLAGW-------EQFNEPVDRIVSIGAFEHFGHDRHADFFARAHKILPPDGVLLLHTITG 171
Query: 298 VPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348
+ Q +H L P FI IFP G P++ V ++ + + ++++
Sbjct: 172 LTRQQMVDHGL-PLTLWLARFLKFIATEIFPGGQPPTIEMVEE-QSAKTGFTLTRRQSLQ 229
Query: 349 THYYQKLRRWRQKFREKHSEILALGFNEKFVR 380
HY + L W + +E SE +A+ E + R
Sbjct: 230 PHYARTLDLWAEALQEHKSEAIAIQSEEVYER 261
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 24/263 (9%)
Query: 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189
+V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+ L G +L
Sbjct: 11 NVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLL 69
Query: 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249
++GCGWG + V + G+TLS+ Q + + V + + + +P
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCSTVPDQCYDE 305
+ + G E GH+ + FS LL +G+ + + + + E
Sbjct: 130 VD----------RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE 179
Query: 306 HSLGPG--------FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR 357
L FI IFP G LPS+ V S++ V +++++ HY + L
Sbjct: 180 RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQEC-ASANGFTVTRVQSLQPHYAKTLDL 238
Query: 358 WRQKFREKHSEILALGFNEKFVR 380
W + + +AL E + R
Sbjct: 239 WSAALQANKGQAIALQSEEVYER 261
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 24/263 (9%)
Query: 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189
+V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+ L G +L
Sbjct: 11 NVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLL 69
Query: 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249
++GCGWG V + G+TLS+ Q + + V + + + +P
Sbjct: 70 DVGCGWGATXXRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 129
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL----SCSTVPDQCYDE 305
+ + G E GH+ + FS LL +G+ + + + + E
Sbjct: 130 VDR----------IVSIGAFEHFGHERYDAFFSLAHRLLPADGVXLLHTITGLHPKEIHE 179
Query: 306 HSLGPG--------FIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR 357
L FI IFP G LPS+ V S++ V +++++ HY + L
Sbjct: 180 RGLPXSFTFARFLKFIVTEIFPGGRLPSIPXVQEC-ASANGFTVTRVQSLQPHYAKTLDL 238
Query: 358 WRQKFREKHSEILALGFNEKFVR 380
W + + +AL E + R
Sbjct: 239 WSAALQANKGQAIALQSEEVYER 261
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 112/255 (43%), Gaps = 19/255 (7%)
Query: 135 YDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCG 194
YD SNE FF L+LD SMTYSCA F+ LE Q K + ++K+ L G +L+IGCG
Sbjct: 24 YDKSNE-FFKLWLDPSMTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCG 82
Query: 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254
WG+ V + G+TLSE Q + + E + +P +
Sbjct: 83 WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRI- 141
Query: 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG---LSCSTVPDQCYDEHSLG-- 309
+ LG F F G +A G + + F +L ++G L T+PD+ + LG
Sbjct: 142 VSLGAFEH-FADGAGDA-GFERYDTFFKKFYNLTPDDGRMLLHTITIPDK-EEAQELGLT 198
Query: 310 -P-------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQK 361
P FI IFP G LP + +V +S++ VE I +Y L W
Sbjct: 199 SPMSLLRFIKFILTEIFPGGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADA 257
Query: 362 FREKHSEILALGFNE 376
+ E +AL E
Sbjct: 258 LQAHKDEAIALKGQE 272
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 102/255 (40%), Gaps = 24/255 (9%)
Query: 130 HVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189
+V YD S++ FF LFLD + TYSCA F+ L+ QI K+ + + K+ L G +L
Sbjct: 11 NVQAHYDLSDD-FFRLFLDPTQTYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLL 69
Query: 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249
+IGCGWG + + G+TLSE Q + + K DT V+
Sbjct: 70 DIGCGWGATMRRAIEKYDVNVVGLTLSENQAGHVQ---KMFDQMDTPRSRRVLLEGW--- 123
Query: 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENG-LSCSTVPDQCYDE--- 305
E F + G E GH F L +G + T+ + E
Sbjct: 124 ----EKFDEPVDRIVSIGAFEHFGHQRYHHFFEVTHRTLPADGKMLLHTIVRPTFKEGRE 179
Query: 306 ------HSLG--PGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRR 357
H L FI IFP G LPS+ V V +++++ HY + L
Sbjct: 180 KGLTLTHELVHFTKFILAEIFPGGWLPSIPTV-HEYAEKVGFRVTAVQSLQLHYARTLDM 238
Query: 358 WRQKFREKHSEILAL 372
W + +A+
Sbjct: 239 WATALEANKDQAIAI 253
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 106/258 (41%), Gaps = 24/258 (9%)
Query: 135 YDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCG 194
YD S++ FF LF D + TYSCA F+ LE Q KV + ++K+ L G +L+IGCG
Sbjct: 42 YDVSDD-FFALFQDPTRTYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCG 100
Query: 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254
WGT V + G+TLS+ Q E + + + + +P +
Sbjct: 101 WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD--- 157
Query: 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC--STVPDQCYDEHSLGP-- 310
+ E GH+ ++ F C +++ +G S+V Y+ + G
Sbjct: 158 -------RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKL 210
Query: 311 --------GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362
FI IFP G LPS + + E L ++ HY + LR W
Sbjct: 211 SFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL-SLRPHYIKTLRIWGDTL 269
Query: 363 REKHSEILALGFNEKFVR 380
+ + + + E + R
Sbjct: 270 QSNKDKAIEVTSEEVYNR 287
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232
G VL++GCG G A+ + + TGI++S Q+ A + AGL
Sbjct: 62 GDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL 109
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
G +++ GCG G + ++ GCK G+TLS Q ++ + +E G+ D
Sbjct: 125 PGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDD 175
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
L + E+L+IGCG G +++E+ + G TGI ++ ++ AE + GL
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 219
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 154 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 211
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 153 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 210
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT-GITLSELQLKYAEIKVKE 229
V+ +I+++K+ +++G G G + +++ T CK+ G+ +++ KYAE +E
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Query: 162 HEDLEVGQIRKVS---VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSEL 218
HE++ +R +S +I+ L K + VL++GCG G L++ + G+ +S +
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI 72
Query: 219 QLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYME 278
++ A+ V+ G D + + P ++ + + F+ + E++ M+
Sbjct: 73 -IEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL--LYESM----MD 125
Query: 279 ELFSCCESLLAENGLSCSTVPDQC 302
+ + L E GL PD+C
Sbjct: 126 TVLYARDHYLVEGGL---IFPDKC 146
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228
+G VL++GCG G ++ R +Y G+ ++E+ + A ++ +
Sbjct: 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 108
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
+++ GCG G + R+ G + G+TLS Q + + +E + D
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD 167
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
L G +VL++G G G LAI + G K G+ + + L AE K G++
Sbjct: 118 LRPGDKVLDLGTGSGVLAI-AAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233
L G +VL++G G G LAI + G K G+ + + L AE K G++
Sbjct: 118 LRPGDKVLDLGTGSGVLAI-AAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCK--YTGITLS 216
+ E ++ G+++LEIGCG G L+ + Q G TGI ++
Sbjct: 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231
K + L ++ G +L++G G G R G TGI S L A+ + +E G
Sbjct: 24 KYATLGRVLRXKPGTRILDLGSGSGEXLCTWARDHGITGTGIDXSSLFTAQAKRRAEELG 83
Query: 232 LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291
+ + +I N ++ N C + VG ++ F+ E LLA++
Sbjct: 84 VSERVHFIH----------NDAAGYVANEK----CDVAACVGATWIAGGFAGAEELLAQS 129
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229
V+ ++E+V+ G+ + +IGCG GT + + + TG+ LSE L+ A+ K E
Sbjct: 24 VAWVLEQVE--PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEXLEIAQEKAXE 76
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 168 GQIRK-VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205
G++ K +L+E V + K ++L++GCG+G + I + +
Sbjct: 35 GKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE 73
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 107 PKKTKKYFFRHISRKNTLTQARRHVSRLYDPSNELF 142
P+K +++FF+ + +K + A V + YDP +F
Sbjct: 235 PEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIF 270
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 162 HEDLEVGQIRKVS---VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSEL 218
HE++ +IR S + + + K + VL++GCG G L++ + K G+ SE+
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI 98
Query: 219 QLKYAEIKVKEAGLQDT 235
+ +I ++ L+DT
Sbjct: 99 LYQAMDI-IRLNKLEDT 114
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAE 224
VL+ G G + I + G K GI +S+LQLK AE
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE 63
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYT 211
+IR VS I K+ L K V+++GCG G +EI ++ CK+
Sbjct: 22 EIRAVS--IGKLNLNKDDVVVDVGCGSGGXTVEIAKR--CKFV 60
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGI 213
V+G++VL++G G+G L + + R G + G+
Sbjct: 232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGV 261
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGI 213
V+G++VL++G G+G L + + R G + G+
Sbjct: 232 VRGRQVLDLGAGYGALTLPLARM-GAEVVGV 261
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 302 CYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLC------VEHLENIETHYYQKL 355
YDE SL P + + G + +R + RLC V+ IE Y Q+L
Sbjct: 4 SYDEASLAPEETTDSFWEVG---NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 356 RRWRQKFRE 364
W +++R+
Sbjct: 61 TDWAKRWRQ 69
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 302 CYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLC------VEHLENIETHYYQKL 355
YDE SL P + + G + +R + RLC V+ IE Y Q+L
Sbjct: 4 SYDEASLAPEETTDSFWEVG---NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 356 RRWRQKFRE 364
W +++R+
Sbjct: 61 TDWAKRWRQ 69
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 302 CYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLC------VEHLENIETHYYQKL 355
YDE SL P + + G + +R + RLC V+ IE Y Q+L
Sbjct: 4 SYDEASLAPEETTDSFWEVG---NYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQL 60
Query: 356 RRWRQKFRE 364
W +++R+
Sbjct: 61 TDWAKRWRQ 69
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 37/209 (17%)
Query: 186 QEVLEIGCGWGTLAIEIVRQTG------CKYTGITLSELQLKYAEIKVKEAGLQDTSDYI 239
++VL IG G G E+++ C+ G+ + E KY +K G D I
Sbjct: 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVI-EAARKY--LKQTSCGFDDPRAEI 148
Query: 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIEAV-------GHDYMEELFSCCESLLAENG 292
+ N E ++ F F +I++ GH + EE + C L E+G
Sbjct: 149 VI--------ANGAE-YVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDG 199
Query: 293 LSCSTVPDQCYDEHSLGPGFIK-EYIFPSGCLPSLRRVTSAMTS------SSRLCVEHLE 345
+ + D YD G+ K Y S P R MT+ S + ++
Sbjct: 200 VFSAETEDPFYD-----IGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFASKGID 254
Query: 346 NIETHYYQKLRRWRQKFREKHSEILALGF 374
I+ +K+R++ ++ + + E+ F
Sbjct: 255 PIKDFDPEKVRKFNKELKYYNEEVHVASF 283
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
K + VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 50 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 99
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
K + VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 158 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 207
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
K + VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 41 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 90
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
K + VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 45 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 94
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD 234
K + VL++GCG G L+ Q G + + ++AE+ VK L D
Sbjct: 46 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTD 95
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLS-ELQLKYAEIKVKEAG 231
+++ +E V L KG VLEIG G G A + R G K G+ +S E K EI +
Sbjct: 64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEK--GLVVSVEYSRKICEIAKRNVE 121
Query: 232 LQDTSDYIFV 241
+ IFV
Sbjct: 122 RLGIENVIFV 131
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 188 VLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKV 227
VL++GCG+G I K GI LSE L A+ K
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG 231
K EVL++GCG G ++ R TG K G+ +SE+ ++ K KE G
Sbjct: 53 KEAEVLDVGCGDGYGTYKLSR-TGYKAVGVDISEVXIQ----KGKERG 95
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 145 LFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQ----EVLEIGCGWGTLAI 200
L L Y+ I K +EV + KV + L++G+ EV IG G GT+A
Sbjct: 47 LVLKLENGYNIGIALEKIRRIEVLERAKVKPEVHFEALIEGKPGLPEVTIIGTG-GTIAS 105
Query: 201 EIVRQTGCKYTGITLSELQLKYAEI 225
I +TG Y T EL EI
Sbjct: 106 RIDYETGAVYPAFTAEELAKALPEI 130
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 162 HEDLEVGQIRKVS---VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSEL 218
HE++ ++R S + + + K + VL++GCG G L++ + K + SE+
Sbjct: 20 HEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEI 79
Query: 219 QLKYAEIKVKEAGLQDT 235
+ +I ++ L+DT
Sbjct: 80 LYQAMDI-IRLNKLEDT 95
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 161 KHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205
++ V IR V+ +I + L KG + +IG G G ++ + Q
Sbjct: 11 QYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,707,106
Number of Sequences: 62578
Number of extensions: 408922
Number of successful extensions: 829
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 49
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)