Query 047022
Match_columns 381
No_of_seqs 412 out of 3913
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:51:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11705 cyclopropane fatty ac 100.0 1.2E-54 2.6E-59 424.0 30.6 311 31-381 35-346 (383)
2 COG2230 Cfa Cyclopropane fatty 100.0 2.7E-55 5.7E-60 403.1 22.4 249 117-381 6-257 (283)
3 PF02353 CMAS: Mycolic acid cy 100.0 2.3E-54 5E-59 403.0 18.6 246 123-381 2-251 (273)
4 PLN02244 tocopherol O-methyltr 99.9 1.3E-25 2.8E-30 217.1 24.1 220 122-356 52-288 (340)
5 smart00828 PKS_MT Methyltransf 99.9 1.8E-23 3.8E-28 190.9 16.6 176 186-381 1-177 (224)
6 COG2226 UbiE Methylase involve 99.9 1.3E-22 2.9E-27 183.9 17.2 192 123-347 12-225 (238)
7 PTZ00098 phosphoethanolamine N 99.9 2E-21 4.3E-26 181.5 22.3 193 172-378 40-233 (263)
8 PF01209 Ubie_methyltran: ubiE 99.9 2E-22 4.3E-27 184.3 9.1 141 125-297 10-152 (233)
9 PLN02336 phosphoethanolamine N 99.9 1E-20 2.3E-25 191.4 21.4 190 173-378 255-445 (475)
10 PLN02233 ubiquinone biosynthes 99.8 2.4E-19 5.2E-24 167.3 17.7 163 176-348 65-250 (261)
11 COG2227 UbiG 2-polyprenyl-3-me 99.8 6.9E-20 1.5E-24 163.5 10.5 159 183-357 58-224 (243)
12 PLN02396 hexaprenyldihydroxybe 99.8 7.2E-19 1.6E-23 167.7 17.9 164 183-359 130-300 (322)
13 TIGR02752 MenG_heptapren 2-hep 99.8 4.8E-19 1.1E-23 162.3 15.9 164 174-348 35-220 (231)
14 PRK11036 putative S-adenosyl-L 99.8 2.9E-18 6.2E-23 159.7 17.4 122 170-301 31-152 (255)
15 KOG1270 Methyltransferases [Co 99.8 1E-18 2.2E-23 157.0 10.0 148 185-346 90-249 (282)
16 PRK14103 trans-aconitate 2-met 99.8 2E-17 4.2E-22 154.1 17.5 156 169-343 14-181 (255)
17 PF12847 Methyltransf_18: Meth 99.8 8E-18 1.7E-22 136.3 12.5 107 184-298 1-111 (112)
18 KOG1540 Ubiquinone biosynthesi 99.8 1.3E-17 2.8E-22 148.9 14.2 142 125-297 63-213 (296)
19 TIGR00452 methyltransferase, p 99.7 1.3E-16 2.9E-21 151.6 20.4 181 166-359 103-288 (314)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 8.2E-17 1.8E-21 154.4 18.8 165 170-349 108-277 (322)
21 PRK01683 trans-aconitate 2-met 99.7 4.5E-17 9.8E-22 151.8 16.4 158 168-342 15-183 (258)
22 PRK11207 tellurite resistance 99.7 9.2E-17 2E-21 143.7 17.5 112 175-296 21-132 (197)
23 PRK10258 biotin biosynthesis p 99.7 7.7E-17 1.7E-21 149.7 15.3 162 169-350 27-190 (251)
24 PLN02490 MPBQ/MSBQ methyltrans 99.7 1.5E-16 3.3E-21 152.3 17.6 158 175-353 103-263 (340)
25 TIGR00477 tehB tellurite resis 99.7 6.6E-16 1.4E-20 138.0 17.4 147 175-345 21-168 (195)
26 PRK07580 Mg-protoporphyrin IX 99.7 2.4E-16 5.2E-21 144.2 14.7 162 182-360 61-229 (230)
27 TIGR02021 BchM-ChlM magnesium 99.7 3.9E-16 8.4E-21 142.0 15.5 166 171-353 40-213 (219)
28 PF08241 Methyltransf_11: Meth 99.7 8E-17 1.7E-21 125.8 9.4 95 189-296 1-95 (95)
29 PRK05785 hypothetical protein; 99.7 4E-16 8.6E-21 142.5 14.4 129 125-292 12-141 (226)
30 PRK15451 tRNA cmo(5)U34 methyl 99.7 7.5E-16 1.6E-20 142.7 16.5 108 182-298 54-164 (247)
31 PRK11873 arsM arsenite S-adeno 99.7 1.4E-15 3.1E-20 142.9 17.4 156 180-346 73-230 (272)
32 PRK08317 hypothetical protein; 99.7 2.6E-15 5.7E-20 137.5 18.8 116 174-300 9-126 (241)
33 PF13847 Methyltransf_31: Meth 99.7 4.6E-16 9.9E-21 133.4 12.1 109 183-300 2-112 (152)
34 PF13489 Methyltransf_23: Meth 99.7 1.3E-16 2.8E-21 137.2 8.7 138 182-343 20-160 (161)
35 TIGR00740 methyltransferase, p 99.7 1.3E-15 2.8E-20 140.4 15.4 108 183-299 52-162 (239)
36 PRK00216 ubiE ubiquinone/menaq 99.7 1.8E-15 3.8E-20 138.9 16.1 117 173-298 40-158 (239)
37 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.6E-15 3.4E-20 137.8 15.4 138 127-298 4-143 (223)
38 PRK12335 tellurite resistance 99.7 4.1E-15 9E-20 140.8 18.4 139 184-345 120-258 (287)
39 TIGR02716 C20_methyl_CrtF C-20 99.7 4.9E-15 1.1E-19 141.7 17.8 159 173-343 138-303 (306)
40 PLN02585 magnesium protoporphy 99.6 9.2E-15 2E-19 139.2 18.3 147 184-347 144-300 (315)
41 PF03848 TehB: Tellurite resis 99.6 8.4E-15 1.8E-19 129.0 16.0 112 175-297 21-132 (192)
42 PRK00107 gidB 16S rRNA methylt 99.6 2.1E-14 4.4E-19 127.0 18.0 103 182-299 43-146 (187)
43 PRK05134 bifunctional 3-demeth 99.6 9.2E-15 2E-19 134.2 16.4 177 171-362 35-219 (233)
44 PF13649 Methyltransf_25: Meth 99.6 1.3E-15 2.9E-20 121.3 7.6 96 188-292 1-101 (101)
45 TIGR02469 CbiT precorrin-6Y C5 99.6 2.1E-14 4.6E-19 118.0 14.9 114 173-298 8-122 (124)
46 TIGR02072 BioC biotin biosynth 99.6 4.3E-14 9.4E-19 129.6 17.2 119 169-301 16-138 (240)
47 TIGR00138 gidB 16S rRNA methyl 99.6 2.9E-14 6.3E-19 125.7 14.6 100 184-298 42-142 (181)
48 COG4106 Tam Trans-aconitate me 99.6 9.7E-15 2.1E-19 127.6 9.8 149 171-335 17-176 (257)
49 PRK13944 protein-L-isoaspartat 99.6 4.6E-14 9.9E-19 127.1 14.6 114 172-300 60-175 (205)
50 PF08003 Methyltransf_9: Prote 99.6 1.4E-13 2.9E-18 127.6 16.8 163 171-348 102-269 (315)
51 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.7E-13 5.8E-18 122.5 18.5 111 176-296 26-150 (213)
52 TIGR03587 Pse_Me-ase pseudamin 99.6 6.9E-14 1.5E-18 125.7 13.8 116 165-298 26-142 (204)
53 PF07021 MetW: Methionine bios 99.6 7.1E-14 1.5E-18 121.7 13.1 156 175-351 6-172 (193)
54 PRK08287 cobalt-precorrin-6Y C 99.5 2.3E-13 4.9E-18 120.8 16.5 109 175-298 22-131 (187)
55 TIGR01983 UbiG ubiquinone bios 99.5 2.5E-13 5.5E-18 123.7 16.5 154 184-348 45-205 (224)
56 smart00138 MeTrc Methyltransfe 99.5 7.8E-14 1.7E-18 130.3 13.2 128 164-298 79-242 (264)
57 PRK00377 cbiT cobalt-precorrin 99.5 3.7E-13 8.1E-18 120.5 16.8 113 175-298 31-145 (198)
58 PRK13255 thiopurine S-methyltr 99.5 5.7E-13 1.2E-17 120.8 18.1 149 175-347 28-191 (218)
59 PF08242 Methyltransf_12: Meth 99.5 9E-16 1.9E-20 121.7 -1.0 98 189-294 1-99 (99)
60 KOG1271 Methyltransferases [Ge 99.5 1.4E-13 3.1E-18 117.2 12.1 128 168-302 47-185 (227)
61 PRK00517 prmA ribosomal protei 99.5 6E-13 1.3E-17 123.5 17.4 154 139-347 85-239 (250)
62 PLN02336 phosphoethanolamine N 99.5 2E-13 4.3E-18 138.4 14.7 117 173-298 26-142 (475)
63 TIGR00537 hemK_rel_arch HemK-r 99.5 6.3E-13 1.4E-17 117.1 16.0 137 176-347 11-166 (179)
64 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.7E-17 119.2 18.3 147 178-349 66-213 (226)
65 PRK13942 protein-L-isoaspartat 99.5 3.2E-13 6.9E-18 122.2 14.2 114 170-299 62-177 (212)
66 TIGR00406 prmA ribosomal prote 99.5 3.8E-13 8.3E-18 127.3 15.1 132 143-298 128-259 (288)
67 PF05401 NodS: Nodulation prot 99.5 8.7E-14 1.9E-18 121.3 9.7 116 171-298 29-146 (201)
68 COG2264 PrmA Ribosomal protein 99.5 8.1E-13 1.8E-17 123.3 16.5 132 143-298 131-263 (300)
69 KOG4300 Predicted methyltransf 99.5 1.2E-13 2.6E-18 119.9 10.1 102 186-296 78-180 (252)
70 TIGR00080 pimt protein-L-isoas 99.5 4.7E-13 1E-17 121.4 14.4 114 171-300 64-179 (215)
71 PRK06202 hypothetical protein; 99.5 3.8E-13 8.1E-18 123.5 13.5 103 183-298 59-166 (232)
72 PF05175 MTS: Methyltransferas 99.5 9.1E-13 2E-17 115.1 14.4 106 184-298 31-140 (170)
73 TIGR02081 metW methionine bios 99.5 2.7E-12 5.8E-17 114.6 17.3 152 174-347 5-168 (194)
74 PRK00121 trmB tRNA (guanine-N( 99.5 2.9E-13 6.3E-18 121.6 10.9 111 184-300 40-158 (202)
75 PLN03075 nicotianamine synthas 99.5 7.2E-13 1.6E-17 124.0 13.8 114 178-299 117-234 (296)
76 TIGR01177 conserved hypothetic 99.5 8.6E-13 1.9E-17 127.3 14.2 117 175-300 173-296 (329)
77 PRK06922 hypothetical protein; 99.5 7.1E-13 1.5E-17 134.8 14.0 111 181-298 415-537 (677)
78 PRK14967 putative methyltransf 99.5 6E-12 1.3E-16 114.8 18.3 116 173-299 25-160 (223)
79 PF06325 PrmA: Ribosomal prote 99.4 9.8E-13 2.1E-17 123.8 12.7 132 139-298 127-259 (295)
80 PRK14968 putative methyltransf 99.4 6.1E-12 1.3E-16 111.2 16.3 115 176-299 15-149 (188)
81 PRK15001 SAM-dependent 23S rib 99.4 2E-12 4.4E-17 125.7 13.8 131 154-298 204-340 (378)
82 COG4123 Predicted O-methyltran 99.4 2.2E-12 4.7E-17 117.4 12.8 123 175-302 35-174 (248)
83 COG4976 Predicted methyltransf 99.4 7.2E-14 1.6E-18 123.1 2.9 183 129-348 85-267 (287)
84 PF13659 Methyltransf_26: Meth 99.4 5.4E-13 1.2E-17 108.8 7.8 110 185-299 1-116 (117)
85 PRK11088 rrmA 23S rRNA methylt 99.4 2.3E-12 4.9E-17 121.2 12.9 98 183-302 84-185 (272)
86 PTZ00146 fibrillarin; Provisio 99.4 1.1E-11 2.4E-16 115.6 16.5 144 177-349 125-274 (293)
87 TIGR03533 L3_gln_methyl protei 99.4 8.4E-12 1.8E-16 117.9 15.3 109 183-299 120-252 (284)
88 PRK07402 precorrin-6B methylas 99.4 8.3E-12 1.8E-16 111.6 14.5 112 175-299 31-143 (196)
89 PRK00312 pcm protein-L-isoaspa 99.4 7.2E-12 1.6E-16 113.4 14.2 111 172-299 66-176 (212)
90 PRK09489 rsmC 16S ribosomal RN 99.4 5.6E-12 1.2E-16 121.8 13.8 114 175-299 187-304 (342)
91 TIGR00091 tRNA (guanine-N(7)-) 99.4 2E-12 4.2E-17 115.5 9.6 113 184-301 16-135 (194)
92 COG2518 Pcm Protein-L-isoaspar 99.4 6.6E-12 1.4E-16 111.0 12.8 112 171-299 59-170 (209)
93 TIGR03438 probable methyltrans 99.4 5.7E-12 1.2E-16 120.1 13.4 119 173-299 54-178 (301)
94 COG2242 CobL Precorrin-6B meth 99.4 1.4E-11 3.1E-16 106.7 14.2 110 175-298 25-135 (187)
95 PF06080 DUF938: Protein of un 99.4 2.7E-11 6E-16 107.0 15.6 163 185-349 26-195 (204)
96 PRK14121 tRNA (guanine-N(7)-)- 99.3 5.6E-12 1.2E-16 122.2 11.5 123 175-303 113-240 (390)
97 TIGR03534 RF_mod_PrmC protein- 99.3 5E-11 1.1E-15 110.4 17.5 117 172-298 76-217 (251)
98 TIGR00536 hemK_fam HemK family 99.3 2E-11 4.3E-16 115.5 14.9 109 184-300 114-246 (284)
99 PRK11805 N5-glutamine S-adenos 99.3 2.5E-11 5.4E-16 115.7 15.1 106 186-299 135-264 (307)
100 PF01135 PCMT: Protein-L-isoas 99.3 1E-11 2.2E-16 111.6 10.0 115 170-300 58-174 (209)
101 COG2519 GCD14 tRNA(1-methylade 99.3 4.7E-11 1E-15 107.9 13.7 112 174-300 84-197 (256)
102 PRK13943 protein-L-isoaspartat 99.3 4E-11 8.8E-16 114.6 13.9 112 171-298 67-180 (322)
103 PRK11188 rrmJ 23S rRNA methylt 99.3 2.1E-11 4.6E-16 110.0 11.1 115 172-299 38-166 (209)
104 PLN02781 Probable caffeoyl-CoA 99.3 3.6E-11 7.7E-16 110.4 12.3 109 183-297 67-177 (234)
105 COG2813 RsmC 16S RNA G1207 met 99.3 5.6E-11 1.2E-15 110.4 13.0 129 154-299 134-267 (300)
106 PRK13256 thiopurine S-methyltr 99.3 7.9E-11 1.7E-15 106.7 13.1 115 177-296 36-161 (226)
107 PRK14904 16S rRNA methyltransf 99.3 8.3E-11 1.8E-15 118.1 14.5 117 175-301 241-380 (445)
108 PRK09328 N5-glutamine S-adenos 99.2 1.8E-10 3.9E-15 108.3 15.2 115 175-298 99-238 (275)
109 PHA03411 putative methyltransf 99.2 2.3E-10 4.9E-15 105.8 15.2 102 183-298 63-183 (279)
110 PF05724 TPMT: Thiopurine S-me 99.2 5.4E-11 1.2E-15 107.8 10.4 119 173-298 26-156 (218)
111 PLN02232 ubiquinone biosynthes 99.2 7.7E-11 1.7E-15 101.9 11.0 80 211-299 1-82 (160)
112 TIGR00563 rsmB ribosomal RNA s 99.2 9.4E-11 2E-15 117.1 12.9 124 174-302 228-372 (426)
113 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.6E-10 3.5E-15 108.1 13.2 117 177-301 64-202 (264)
114 PF08704 GCD14: tRNA methyltra 99.2 2.3E-10 4.9E-15 105.1 13.8 119 171-300 27-148 (247)
115 PRK14966 unknown domain/N5-glu 99.2 6.1E-10 1.3E-14 108.9 17.3 108 183-298 250-381 (423)
116 PRK14903 16S rRNA methyltransf 99.2 1.3E-10 2.7E-15 116.0 12.7 121 175-302 228-370 (431)
117 PF01596 Methyltransf_3: O-met 99.2 1E-10 2.3E-15 104.8 10.6 121 168-297 32-154 (205)
118 PRK10901 16S rRNA methyltransf 99.2 2.4E-10 5.1E-15 114.2 13.8 119 175-300 235-374 (427)
119 PRK14901 16S rRNA methyltransf 99.2 2.3E-10 5E-15 114.5 13.5 123 174-300 242-386 (434)
120 PRK14902 16S rRNA methyltransf 99.2 2.7E-10 5.8E-15 114.4 14.1 119 175-300 241-381 (444)
121 cd02440 AdoMet_MTases S-adenos 99.2 1.7E-10 3.8E-15 90.1 10.1 103 187-297 1-103 (107)
122 PRK04457 spermidine synthase; 99.2 1.3E-10 2.8E-15 108.5 10.9 111 183-299 65-178 (262)
123 PRK01544 bifunctional N5-gluta 99.2 3E-10 6.5E-15 115.4 14.1 108 184-299 138-270 (506)
124 KOG1541 Predicted protein carb 99.2 1.1E-10 2.5E-15 102.5 9.2 117 168-298 32-160 (270)
125 PF05891 Methyltransf_PK: AdoM 99.2 1.7E-10 3.6E-15 102.6 10.4 155 173-345 38-200 (218)
126 COG4122 Predicted O-methyltran 99.2 1.9E-10 4E-15 103.3 10.8 109 179-297 54-165 (219)
127 PF03291 Pox_MCEL: mRNA cappin 99.2 6.8E-11 1.5E-15 113.4 8.5 114 184-300 62-188 (331)
128 PLN02476 O-methyltransferase 99.2 2.8E-10 6E-15 106.1 12.1 109 183-297 117-227 (278)
129 smart00650 rADc Ribosomal RNA 99.2 4.6E-10 9.9E-15 97.9 12.6 108 174-297 3-112 (169)
130 KOG3010 Methyltransferase [Gen 99.1 1.8E-10 3.9E-15 102.8 9.3 101 187-298 36-137 (261)
131 PRK00811 spermidine synthase; 99.1 3.4E-10 7.4E-15 106.9 11.7 111 183-299 75-192 (283)
132 PF00891 Methyltransf_2: O-met 99.1 6.8E-10 1.5E-14 102.5 13.2 107 174-298 90-199 (241)
133 KOG2361 Predicted methyltransf 99.1 1.8E-10 3.8E-15 102.8 7.8 153 187-345 74-236 (264)
134 PRK15128 23S rRNA m(5)C1962 me 99.1 1.2E-09 2.6E-14 107.5 14.4 114 184-300 220-341 (396)
135 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.4E-09 3.1E-14 109.2 14.8 119 170-299 283-401 (443)
136 TIGR03704 PrmC_rel_meth putati 99.1 1.9E-09 4.1E-14 100.0 14.5 107 184-299 86-217 (251)
137 COG2890 HemK Methylase of poly 99.1 1.2E-09 2.7E-14 102.7 12.8 103 187-299 113-239 (280)
138 PF05219 DREV: DREV methyltran 99.1 2.7E-09 5.8E-14 97.1 14.2 142 184-346 94-240 (265)
139 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.5E-09 3.2E-14 114.7 14.6 107 184-299 538-657 (702)
140 TIGR00438 rrmJ cell division p 99.1 1.3E-09 2.8E-14 96.7 11.8 105 181-298 29-146 (188)
141 KOG1975 mRNA cap methyltransfe 99.1 2.8E-10 6.2E-15 105.3 7.2 223 122-358 67-329 (389)
142 PRK03522 rumB 23S rRNA methylu 99.1 2.1E-09 4.5E-14 103.2 13.0 114 174-300 163-276 (315)
143 PRK01581 speE spermidine synth 99.0 4.5E-09 9.7E-14 100.9 14.4 111 182-298 148-268 (374)
144 PLN02589 caffeoyl-CoA O-methyl 99.0 2E-09 4.3E-14 99.1 11.2 118 171-297 69-189 (247)
145 TIGR00417 speE spermidine synt 99.0 3.7E-09 8.1E-14 99.2 13.1 113 182-300 70-188 (270)
146 PRK03612 spermidine synthase; 99.0 1.9E-09 4.2E-14 110.1 11.4 112 182-299 295-416 (521)
147 COG1041 Predicted DNA modifica 99.0 1E-08 2.2E-13 97.3 14.7 117 175-299 188-311 (347)
148 PLN02366 spermidine synthase 99.0 2.6E-09 5.7E-14 101.6 10.4 112 182-298 89-206 (308)
149 PF02390 Methyltransf_4: Putat 99.0 1.9E-09 4.1E-14 96.1 8.6 112 186-302 19-137 (195)
150 TIGR00479 rumA 23S rRNA (uraci 98.9 1.9E-08 4.2E-13 100.7 15.7 118 170-298 278-396 (431)
151 PF05185 PRMT5: PRMT5 arginine 98.9 2.6E-09 5.6E-14 106.6 9.3 101 185-294 187-293 (448)
152 KOG1499 Protein arginine N-met 98.9 5.2E-09 1.1E-13 98.7 10.7 106 182-295 58-164 (346)
153 PRK10909 rsmD 16S rRNA m(2)G96 98.9 1.5E-08 3.3E-13 90.4 13.2 108 183-300 52-161 (199)
154 COG2521 Predicted archaeal met 98.9 3.9E-09 8.5E-14 93.7 8.4 144 177-344 127-275 (287)
155 PF10294 Methyltransf_16: Puta 98.9 1.5E-08 3.2E-13 88.8 12.0 114 182-301 43-159 (173)
156 PLN02672 methionine S-methyltr 98.9 3E-08 6.4E-13 107.4 16.5 110 185-300 119-280 (1082)
157 KOG1269 SAM-dependent methyltr 98.9 3.5E-09 7.6E-14 102.4 8.2 158 126-296 56-213 (364)
158 PTZ00338 dimethyladenosine tra 98.9 1E-08 2.2E-13 97.1 11.2 87 170-266 22-108 (294)
159 PF01170 UPF0020: Putative RNA 98.9 3.3E-08 7E-13 87.1 13.6 117 175-299 19-151 (179)
160 PF01739 CheR: CheR methyltran 98.9 1.3E-08 2.9E-13 90.5 10.7 117 176-299 23-176 (196)
161 PHA03412 putative methyltransf 98.9 1.3E-08 2.8E-13 92.2 10.2 96 184-293 49-158 (241)
162 KOG2940 Predicted methyltransf 98.9 3.6E-09 7.8E-14 93.6 6.4 170 169-353 59-236 (325)
163 PF12147 Methyltransf_20: Puta 98.9 1.1E-07 2.5E-12 87.6 16.1 150 184-343 135-295 (311)
164 KOG1500 Protein arginine N-met 98.9 2E-08 4.3E-13 93.5 11.0 178 183-371 176-362 (517)
165 PF05148 Methyltransf_8: Hypot 98.9 1.3E-08 2.9E-13 89.7 9.3 127 171-346 58-185 (219)
166 KOG2904 Predicted methyltransf 98.8 5.1E-08 1.1E-12 88.7 12.8 117 182-300 146-287 (328)
167 PRK14896 ksgA 16S ribosomal RN 98.8 2E-08 4.4E-13 93.6 10.7 86 170-268 15-100 (258)
168 TIGR02085 meth_trns_rumB 23S r 98.8 3.9E-08 8.5E-13 96.5 12.6 112 174-298 223-334 (374)
169 COG0220 Predicted S-adenosylme 98.8 1.3E-08 2.7E-13 92.5 7.7 115 186-305 50-171 (227)
170 PRK00274 ksgA 16S ribosomal RN 98.8 2.2E-08 4.8E-13 94.1 9.4 84 171-266 29-112 (272)
171 KOG3045 Predicted RNA methylas 98.8 3.5E-08 7.6E-13 89.0 10.0 123 173-346 168-291 (325)
172 KOG2899 Predicted methyltransf 98.8 1.7E-08 3.7E-13 90.2 7.7 113 184-298 58-209 (288)
173 PF02475 Met_10: Met-10+ like- 98.8 1.7E-08 3.7E-13 89.9 7.6 99 182-294 99-198 (200)
174 COG2263 Predicted RNA methylas 98.8 6.4E-08 1.4E-12 83.8 10.8 78 179-269 40-118 (198)
175 KOG1663 O-methyltransferase [S 98.7 7.1E-08 1.5E-12 86.0 10.1 115 174-297 66-182 (237)
176 PRK11727 23S rRNA mA1618 methy 98.7 1.6E-07 3.6E-12 89.6 13.4 85 184-270 114-200 (321)
177 PRK10611 chemotaxis methyltran 98.7 3.4E-08 7.4E-13 92.8 8.2 108 185-298 116-262 (287)
178 COG1092 Predicted SAM-dependen 98.7 1.8E-07 3.9E-12 91.3 13.4 114 184-302 217-340 (393)
179 TIGR00755 ksgA dimethyladenosi 98.7 2.5E-07 5.3E-12 86.1 12.5 83 171-266 16-101 (253)
180 PLN02823 spermine synthase 98.7 3.2E-07 6.9E-12 88.3 13.3 106 184-298 103-220 (336)
181 PRK11933 yebU rRNA (cytosine-C 98.7 2.4E-07 5.3E-12 92.9 12.9 115 181-302 110-246 (470)
182 PRK01544 bifunctional N5-gluta 98.7 1.1E-07 2.3E-12 96.9 10.3 135 163-303 319-467 (506)
183 TIGR00478 tly hemolysin TlyA f 98.7 5.1E-07 1.1E-11 82.2 13.5 110 170-298 60-171 (228)
184 PF03141 Methyltransf_29: Puta 98.6 2.7E-08 5.8E-13 98.0 4.8 117 169-300 98-221 (506)
185 PRK04148 hypothetical protein; 98.6 4.9E-07 1.1E-11 74.9 11.2 101 175-297 7-108 (134)
186 KOG3178 Hydroxyindole-O-methyl 98.6 4.9E-07 1.1E-11 85.6 12.3 151 185-352 178-336 (342)
187 TIGR00095 RNA methyltransferas 98.6 4.4E-07 9.5E-12 80.6 11.4 109 184-300 49-161 (189)
188 PRK04338 N(2),N(2)-dimethylgua 98.6 3.8E-07 8.2E-12 89.5 11.7 103 184-300 57-160 (382)
189 COG1352 CheR Methylase of chem 98.6 3.6E-07 7.8E-12 84.9 10.8 128 164-299 77-242 (268)
190 KOG0820 Ribosomal RNA adenine 98.6 2.3E-07 4.9E-12 84.5 9.2 85 172-266 46-130 (315)
191 PF10672 Methyltrans_SAM: S-ad 98.6 3.7E-07 8.1E-12 85.7 10.9 111 184-301 123-241 (286)
192 KOG1661 Protein-L-isoaspartate 98.6 5E-07 1.1E-11 79.3 10.3 110 175-299 71-194 (237)
193 COG3963 Phospholipid N-methylt 98.5 4.3E-07 9.3E-12 76.9 8.6 113 175-295 39-153 (194)
194 COG0030 KsgA Dimethyladenosine 98.5 5.4E-07 1.2E-11 82.9 9.9 85 171-266 17-102 (259)
195 PF07942 N2227: N2227-like pro 98.5 4.9E-06 1.1E-10 77.3 15.9 153 184-351 56-248 (270)
196 COG0421 SpeE Spermidine syntha 98.5 1.3E-06 2.9E-11 81.9 11.7 108 186-300 78-192 (282)
197 KOG2915 tRNA(1-methyladenosine 98.5 2.8E-06 6E-11 77.5 12.3 113 173-297 94-208 (314)
198 PRK00050 16S rRNA m(4)C1402 me 98.4 5.3E-07 1.1E-11 85.1 7.9 89 173-267 8-98 (296)
199 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.4 8.9E-07 1.9E-11 81.7 8.9 153 184-345 56-238 (256)
200 TIGR03439 methyl_EasF probable 98.4 7.1E-06 1.5E-10 78.4 14.7 126 170-300 64-199 (319)
201 TIGR02143 trmA_only tRNA (urac 98.4 2.7E-06 5.8E-11 83.0 12.0 116 172-299 186-312 (353)
202 PRK05031 tRNA (uracil-5-)-meth 98.4 4.6E-06 1E-10 81.6 13.5 115 171-298 194-320 (362)
203 PF02527 GidB: rRNA small subu 98.4 4E-06 8.8E-11 73.9 11.2 97 187-298 51-148 (184)
204 COG2520 Predicted methyltransf 98.4 2.5E-06 5.4E-11 81.6 10.6 104 175-294 181-285 (341)
205 COG2265 TrmA SAM-dependent met 98.4 3.1E-06 6.7E-11 84.1 11.6 117 170-298 279-396 (432)
206 PF01564 Spermine_synth: Sperm 98.4 1.7E-06 3.8E-11 79.9 9.1 110 183-298 75-191 (246)
207 PF03602 Cons_hypoth95: Conser 98.4 1.2E-06 2.5E-11 77.4 7.4 111 184-300 42-155 (183)
208 PF09445 Methyltransf_15: RNA 98.3 8.3E-07 1.8E-11 76.3 6.0 74 187-266 2-76 (163)
209 COG0116 Predicted N6-adenine-s 98.3 1.4E-05 3E-10 77.2 13.9 117 175-299 182-345 (381)
210 COG0144 Sun tRNA and rRNA cyto 98.3 1.4E-05 3E-10 77.9 14.0 123 175-303 147-293 (355)
211 PRK00536 speE spermidine synth 98.3 7.3E-06 1.6E-10 76.0 11.4 99 182-298 70-171 (262)
212 PF08123 DOT1: Histone methyla 98.3 2.3E-06 4.9E-11 76.8 7.8 119 171-296 29-156 (205)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9.5E-06 2.1E-10 86.0 13.6 123 175-302 180-351 (702)
214 COG0357 GidB Predicted S-adeno 98.3 9E-06 2E-10 73.0 11.1 97 185-296 68-166 (215)
215 KOG3191 Predicted N6-DNA-methy 98.3 6.7E-05 1.5E-09 64.7 15.5 104 185-298 44-168 (209)
216 PF13679 Methyltransf_32: Meth 98.2 2.5E-05 5.4E-10 66.0 12.5 102 183-299 24-132 (141)
217 KOG3420 Predicted RNA methylas 98.2 3.6E-06 7.9E-11 69.6 6.9 86 175-269 39-124 (185)
218 COG0742 N6-adenine-specific me 98.2 3.6E-05 7.7E-10 67.4 12.8 121 175-300 32-156 (187)
219 KOG1331 Predicted methyltransf 98.2 2.1E-06 4.5E-11 79.1 5.0 109 170-297 33-142 (293)
220 TIGR00308 TRM1 tRNA(guanine-26 98.2 2.5E-05 5.5E-10 76.4 12.8 101 185-298 45-147 (374)
221 PF02384 N6_Mtase: N-6 DNA Met 98.2 8.3E-06 1.8E-10 78.1 9.3 125 171-300 33-185 (311)
222 PF01728 FtsJ: FtsJ-like methy 98.1 3.5E-06 7.6E-11 74.2 5.6 117 170-299 6-140 (181)
223 COG4262 Predicted spermidine s 98.1 1.1E-05 2.3E-10 76.5 8.9 142 138-300 253-409 (508)
224 PF09243 Rsm22: Mitochondrial 98.1 5.4E-05 1.2E-09 71.2 13.3 119 171-299 20-140 (274)
225 PF01269 Fibrillarin: Fibrilla 98.1 7.9E-05 1.7E-09 66.7 13.2 146 178-349 67-215 (229)
226 COG0500 SmtA SAM-dependent met 98.1 7.9E-05 1.7E-09 61.7 12.1 101 188-300 52-157 (257)
227 PF05958 tRNA_U5-meth_tr: tRNA 98.0 2.3E-05 5E-10 76.4 9.6 74 170-247 183-256 (352)
228 PF11968 DUF3321: Putative met 98.0 1.3E-05 2.9E-10 71.3 7.2 124 186-347 53-182 (219)
229 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.0 4.2E-05 9.1E-10 72.3 10.3 120 175-300 76-221 (283)
230 KOG3987 Uncharacterized conser 98.0 3.1E-06 6.8E-11 74.1 2.4 100 185-304 113-215 (288)
231 PF04816 DUF633: Family of unk 97.9 0.00027 5.8E-09 63.4 13.6 97 188-296 1-99 (205)
232 PF00398 RrnaAD: Ribosomal RNA 97.9 8.2E-05 1.8E-09 69.6 10.2 104 170-286 16-119 (262)
233 PF04672 Methyltransf_19: S-ad 97.9 6.1E-05 1.3E-09 69.6 8.9 171 167-343 50-233 (267)
234 COG3897 Predicted methyltransf 97.9 6.8E-05 1.5E-09 65.4 8.2 126 176-317 71-197 (218)
235 KOG1709 Guanidinoacetate methy 97.9 0.00016 3.5E-09 63.9 10.6 117 171-296 88-204 (271)
236 COG4076 Predicted RNA methylas 97.8 3.2E-05 7E-10 66.8 5.5 98 186-295 34-132 (252)
237 COG1889 NOP1 Fibrillarin-like 97.8 0.00052 1.1E-08 60.3 13.0 146 178-349 70-217 (231)
238 COG0293 FtsJ 23S rRNA methylas 97.8 0.00011 2.3E-09 65.4 8.9 116 170-298 30-159 (205)
239 PF07091 FmrO: Ribosomal RNA m 97.8 0.00024 5.1E-09 64.9 11.2 138 183-344 104-242 (251)
240 PF03059 NAS: Nicotianamine sy 97.8 0.00017 3.6E-09 67.4 10.3 105 186-298 122-230 (276)
241 COG1189 Predicted rRNA methyla 97.8 0.00021 4.6E-09 64.5 9.9 113 171-298 65-178 (245)
242 KOG3201 Uncharacterized conser 97.7 0.00014 3E-09 61.5 8.0 155 175-362 20-178 (201)
243 TIGR02987 met_A_Alw26 type II 97.7 0.0003 6.5E-09 72.4 11.7 81 184-267 31-120 (524)
244 PRK11760 putative 23S rRNA C24 97.7 0.00025 5.5E-09 67.6 10.0 98 172-291 191-296 (357)
245 TIGR01444 fkbM_fam methyltrans 97.6 0.0002 4.3E-09 60.2 7.5 58 187-246 1-59 (143)
246 COG4627 Uncharacterized protei 97.6 5.9E-05 1.3E-09 63.3 3.8 50 255-304 43-92 (185)
247 KOG2187 tRNA uracil-5-methyltr 97.6 9.8E-05 2.1E-09 73.2 5.6 99 143-248 345-444 (534)
248 PRK10742 putative methyltransf 97.6 0.00029 6.2E-09 64.5 8.2 92 174-272 76-177 (250)
249 PF13578 Methyltransf_24: Meth 97.5 2.5E-05 5.4E-10 62.3 0.8 100 189-297 1-104 (106)
250 TIGR00006 S-adenosyl-methyltra 97.5 0.00044 9.6E-09 65.5 9.0 92 172-267 8-100 (305)
251 COG2384 Predicted SAM-dependen 97.5 0.0015 3.2E-08 58.4 10.8 105 173-290 7-112 (226)
252 PF01861 DUF43: Protein of unk 97.4 0.026 5.7E-07 51.4 18.4 103 183-298 43-149 (243)
253 KOG2730 Methylase [General fun 97.4 9.9E-05 2.1E-09 65.5 2.2 104 184-293 94-197 (263)
254 PF05971 Methyltransf_10: Prot 97.3 0.0022 4.8E-08 60.5 10.8 85 185-272 103-190 (299)
255 COG1064 AdhP Zn-dependent alco 97.3 0.0013 2.9E-08 63.0 9.2 100 177-298 159-259 (339)
256 KOG2798 Putative trehalase [Ca 97.3 0.0057 1.2E-07 57.4 12.9 153 185-352 151-343 (369)
257 PF06962 rRNA_methylase: Putat 97.2 0.0007 1.5E-08 56.6 6.0 83 209-298 1-92 (140)
258 KOG1122 tRNA and rRNA cytosine 97.2 0.0031 6.7E-08 61.3 11.0 118 177-302 234-375 (460)
259 KOG2352 Predicted spermine/spe 97.2 0.0015 3.2E-08 64.8 8.4 107 183-298 46-162 (482)
260 COG4798 Predicted methyltransf 97.1 0.0037 8.1E-08 54.7 9.6 114 176-298 40-166 (238)
261 KOG4058 Uncharacterized conser 97.1 0.0038 8.3E-08 52.1 8.7 112 171-297 59-171 (199)
262 KOG3115 Methyltransferase-like 97.0 0.0016 3.4E-08 57.3 6.2 111 184-298 60-183 (249)
263 PLN02668 indole-3-acetate carb 97.0 0.02 4.4E-07 56.1 14.5 156 185-348 64-311 (386)
264 KOG0024 Sorbitol dehydrogenase 97.0 0.011 2.4E-07 55.9 12.0 109 175-300 160-275 (354)
265 COG0286 HsdM Type I restrictio 97.0 0.011 2.5E-07 60.1 12.8 130 171-302 173-330 (489)
266 PRK09880 L-idonate 5-dehydroge 96.9 0.0085 1.8E-07 58.0 10.7 102 177-297 162-265 (343)
267 KOG1501 Arginine N-methyltrans 96.9 0.0026 5.6E-08 62.0 6.7 102 186-293 68-170 (636)
268 PF03492 Methyltransf_7: SAM d 96.8 0.036 7.8E-07 53.7 14.2 159 182-348 14-255 (334)
269 PF04445 SAM_MT: Putative SAM- 96.7 0.0052 1.1E-07 55.9 6.9 92 174-272 63-164 (234)
270 KOG2198 tRNA cytosine-5-methyl 96.7 0.016 3.5E-07 55.7 10.4 121 179-301 150-299 (375)
271 KOG2793 Putative N2,N2-dimethy 96.6 0.015 3.3E-07 53.4 9.6 113 184-302 86-203 (248)
272 PRK09424 pntA NAD(P) transhydr 96.5 0.021 4.6E-07 58.1 10.6 104 182-296 162-283 (509)
273 KOG4589 Cell division protein 96.3 0.032 6.9E-07 48.7 9.1 107 182-300 67-186 (232)
274 COG1063 Tdh Threonine dehydrog 96.3 0.24 5.1E-06 48.3 16.5 98 182-299 166-271 (350)
275 KOG0822 Protein kinase inhibit 96.3 0.018 3.8E-07 57.7 8.4 132 153-293 333-473 (649)
276 TIGR02822 adh_fam_2 zinc-bindi 96.2 0.067 1.5E-06 51.5 12.0 94 178-297 159-253 (329)
277 PF03141 Methyltransf_29: Puta 96.2 0.0078 1.7E-07 60.1 5.4 97 186-297 367-466 (506)
278 PF10354 DUF2431: Domain of un 96.1 0.064 1.4E-06 46.5 10.3 135 191-351 3-157 (166)
279 cd08254 hydroxyacyl_CoA_DH 6-h 96.1 0.05 1.1E-06 52.0 10.7 101 179-297 160-262 (338)
280 COG0275 Predicted S-adenosylme 96.1 0.032 6.8E-07 52.4 8.7 90 172-265 11-102 (314)
281 cd08239 THR_DH_like L-threonin 96.0 0.024 5.1E-07 54.6 7.9 103 177-297 156-261 (339)
282 cd08230 glucose_DH Glucose deh 95.9 0.07 1.5E-06 51.9 11.0 97 179-296 167-267 (355)
283 TIGR03366 HpnZ_proposed putati 95.9 0.035 7.5E-07 52.1 8.3 99 177-297 113-217 (280)
284 TIGR03451 mycoS_dep_FDH mycoth 95.9 0.061 1.3E-06 52.4 10.2 104 177-297 169-275 (358)
285 cd08281 liver_ADH_like1 Zinc-d 95.8 0.029 6.2E-07 55.0 7.6 105 176-297 183-289 (371)
286 cd08283 FDH_like_1 Glutathione 95.8 0.022 4.8E-07 56.1 6.7 113 178-298 178-306 (386)
287 PRK11524 putative methyltransf 95.7 0.038 8.2E-07 52.3 7.8 57 171-229 196-252 (284)
288 PF02005 TRM: N2,N2-dimethylgu 95.6 0.041 8.9E-07 54.1 7.9 105 184-300 49-156 (377)
289 PF01795 Methyltransf_5: MraW 95.6 0.018 3.9E-07 54.7 5.1 90 173-266 9-100 (310)
290 PF04989 CmcI: Cephalosporin h 95.5 0.034 7.3E-07 49.7 6.2 115 174-297 25-146 (206)
291 PF03269 DUF268: Caenorhabditi 95.5 0.041 8.8E-07 46.9 6.2 104 185-302 2-115 (177)
292 PLN02740 Alcohol dehydrogenase 95.4 0.11 2.4E-06 51.1 10.3 104 177-296 191-298 (381)
293 PF01555 N6_N4_Mtase: DNA meth 95.4 0.047 1E-06 49.1 7.0 53 171-225 179-231 (231)
294 KOG2078 tRNA modification enzy 95.4 0.011 2.4E-07 57.6 2.8 87 150-247 224-311 (495)
295 KOG1562 Spermidine synthase [A 95.4 0.033 7.1E-07 52.0 5.7 111 182-297 119-235 (337)
296 cd05188 MDR Medium chain reduc 95.3 0.16 3.6E-06 46.4 10.3 99 182-298 132-232 (271)
297 KOG1596 Fibrillarin and relate 95.2 0.071 1.5E-06 48.3 7.2 111 177-303 149-266 (317)
298 PRK13699 putative methylase; P 95.2 0.083 1.8E-06 48.2 7.9 57 172-230 152-208 (227)
299 COG5459 Predicted rRNA methyla 95.2 0.086 1.9E-06 50.4 8.0 109 184-300 113-227 (484)
300 cd08237 ribitol-5-phosphate_DH 95.2 0.14 3.1E-06 49.5 10.0 93 180-296 159-254 (341)
301 TIGR03201 dearomat_had 6-hydro 95.1 0.2 4.3E-06 48.6 10.8 48 178-225 160-208 (349)
302 COG0604 Qor NADPH:quinone redu 95.0 0.11 2.4E-06 50.2 8.6 106 174-297 132-240 (326)
303 TIGR02818 adh_III_F_hyde S-(hy 94.9 0.22 4.7E-06 48.8 10.6 104 177-296 178-285 (368)
304 PRK10309 galactitol-1-phosphat 94.9 0.094 2E-06 50.7 7.8 103 178-297 154-259 (347)
305 cd00401 AdoHcyase S-adenosyl-L 94.9 0.2 4.4E-06 49.8 10.1 98 173-298 189-289 (413)
306 COG3129 Predicted SAM-dependen 94.8 0.099 2.2E-06 47.2 6.8 86 184-271 78-165 (292)
307 PF00107 ADH_zinc_N: Zinc-bind 94.8 0.11 2.4E-06 42.4 6.9 87 194-298 1-89 (130)
308 cd08242 MDR_like Medium chain 94.6 0.6 1.3E-05 44.3 12.6 96 176-296 147-243 (319)
309 cd08261 Zn_ADH7 Alcohol dehydr 94.6 0.12 2.5E-06 49.7 7.7 102 178-296 153-256 (337)
310 PLN02827 Alcohol dehydrogenase 94.5 0.27 5.8E-06 48.4 10.1 101 178-296 187-293 (378)
311 PLN03154 putative allyl alcoho 94.5 0.38 8.2E-06 46.7 11.0 102 177-297 151-257 (348)
312 cd08232 idonate-5-DH L-idonate 94.4 0.34 7.3E-06 46.5 10.4 97 179-296 160-260 (339)
313 PF06859 Bin3: Bicoid-interact 94.4 0.038 8.3E-07 44.0 3.0 41 259-299 1-45 (110)
314 TIGR02825 B4_12hDH leukotriene 94.4 0.44 9.5E-06 45.5 11.0 105 176-297 130-236 (325)
315 KOG2920 Predicted methyltransf 94.2 0.039 8.5E-07 51.3 3.2 106 183-298 115-234 (282)
316 COG1565 Uncharacterized conser 94.2 0.23 5E-06 47.9 8.3 61 170-230 63-132 (370)
317 PHA01634 hypothetical protein 94.2 0.14 3E-06 41.9 5.8 55 177-232 22-76 (156)
318 cd08300 alcohol_DH_class_III c 94.1 0.45 9.9E-06 46.4 10.7 104 177-296 179-286 (368)
319 COG4301 Uncharacterized conser 94.1 1.1 2.4E-05 41.0 12.0 113 183-300 77-195 (321)
320 PTZ00357 methyltransferase; Pr 94.1 0.28 6.1E-06 50.9 9.1 112 187-300 703-841 (1072)
321 TIGR00027 mthyl_TIGR00027 meth 94.1 0.67 1.4E-05 43.2 11.1 129 170-300 67-199 (260)
322 KOG2651 rRNA adenine N-6-methy 94.0 0.18 3.8E-06 48.8 7.2 59 167-225 135-194 (476)
323 TIGR01202 bchC 2-desacetyl-2-h 94.0 0.31 6.8E-06 46.4 9.1 86 183-297 143-230 (308)
324 COG1867 TRM1 N2,N2-dimethylgua 94.0 0.5 1.1E-05 45.7 10.1 103 185-300 53-156 (380)
325 cd08277 liver_alcohol_DH_like 93.9 0.53 1.2E-05 45.9 10.8 106 177-297 177-285 (365)
326 cd08294 leukotriene_B4_DH_like 93.9 0.48 1E-05 45.0 10.2 102 176-296 135-239 (329)
327 PF02636 Methyltransf_28: Puta 93.9 0.17 3.7E-06 46.9 6.8 88 175-274 8-110 (252)
328 cd08238 sorbose_phosphate_red 93.9 0.76 1.6E-05 45.7 11.9 108 179-296 170-286 (410)
329 cd08255 2-desacetyl-2-hydroxye 93.7 0.81 1.8E-05 42.4 11.2 96 178-296 91-188 (277)
330 cd08233 butanediol_DH_like (2R 93.7 0.24 5.2E-06 47.9 7.9 102 178-296 166-270 (351)
331 cd08236 sugar_DH NAD(P)-depend 93.7 0.27 5.8E-06 47.3 8.1 101 179-297 154-257 (343)
332 TIGR00561 pntA NAD(P) transhyd 93.5 0.25 5.5E-06 50.3 7.8 102 183-295 162-281 (511)
333 KOG2671 Putative RNA methylase 93.5 0.068 1.5E-06 50.9 3.3 116 177-299 201-355 (421)
334 PLN02586 probable cinnamyl alc 93.4 0.84 1.8E-05 44.5 11.1 95 182-297 181-277 (360)
335 cd08301 alcohol_DH_plants Plan 93.4 0.74 1.6E-05 44.9 10.7 104 177-296 180-287 (369)
336 cd08285 NADP_ADH NADP(H)-depen 93.4 0.26 5.5E-06 47.7 7.4 102 178-296 160-264 (351)
337 PRK05476 S-adenosyl-L-homocyst 93.4 0.61 1.3E-05 46.6 10.0 86 184-297 211-298 (425)
338 PF11899 DUF3419: Protein of u 93.4 0.23 4.9E-06 48.9 6.9 52 176-228 27-78 (380)
339 cd05285 sorbitol_DH Sorbitol d 93.3 0.35 7.6E-06 46.6 8.3 103 178-297 156-264 (343)
340 KOG1099 SAM-dependent methyltr 93.2 0.13 2.9E-06 46.3 4.6 99 186-297 43-162 (294)
341 PF07279 DUF1442: Protein of u 93.2 1.6 3.4E-05 39.2 11.3 101 184-298 41-148 (218)
342 cd08234 threonine_DH_like L-th 93.1 1.7 3.6E-05 41.4 12.6 101 178-297 153-256 (334)
343 cd08295 double_bond_reductase_ 92.9 1 2.2E-05 43.3 10.7 104 177-296 144-249 (338)
344 KOG1197 Predicted quinone oxid 92.9 1 2.3E-05 41.5 9.8 116 162-295 118-242 (336)
345 cd08293 PTGR2 Prostaglandin re 92.7 0.99 2.2E-05 43.3 10.5 102 178-296 146-252 (345)
346 cd08231 MDR_TM0436_like Hypoth 92.7 0.99 2.1E-05 43.7 10.5 101 183-297 176-279 (361)
347 cd08245 CAD Cinnamyl alcohol d 92.7 0.82 1.8E-05 43.6 9.7 99 178-297 156-255 (330)
348 TIGR02819 fdhA_non_GSH formald 92.6 0.34 7.4E-06 48.0 7.1 110 178-296 179-297 (393)
349 cd08296 CAD_like Cinnamyl alco 92.0 0.99 2.1E-05 43.2 9.4 99 178-296 157-257 (333)
350 cd08279 Zn_ADH_class_III Class 92.0 0.54 1.2E-05 45.8 7.6 103 177-297 175-281 (363)
351 cd08298 CAD2 Cinnamyl alcohol 92.0 3.4 7.4E-05 39.2 13.1 94 178-297 161-255 (329)
352 cd05278 FDH_like Formaldehyde 91.8 0.5 1.1E-05 45.4 7.1 102 179-297 162-266 (347)
353 KOG0022 Alcohol dehydrogenase, 91.7 0.97 2.1E-05 42.9 8.4 110 176-300 184-297 (375)
354 cd08278 benzyl_alcohol_DH Benz 91.6 1.4 3E-05 43.0 10.0 103 178-297 180-284 (365)
355 PRK01747 mnmC bifunctional tRN 91.5 1.3 2.7E-05 47.2 10.2 106 184-295 57-203 (662)
356 PLN02514 cinnamyl-alcohol dehy 91.4 2.5 5.4E-05 41.1 11.6 96 182-297 178-274 (357)
357 TIGR00936 ahcY adenosylhomocys 91.4 1.4 3.1E-05 43.7 9.8 97 174-298 183-282 (406)
358 cd08286 FDH_like_ADH2 formalde 91.4 1.9 4.1E-05 41.4 10.6 99 178-296 160-264 (345)
359 COG5379 BtaA S-adenosylmethion 91.3 0.78 1.7E-05 43.0 7.2 61 155-228 46-106 (414)
360 PF02254 TrkA_N: TrkA-N domain 91.2 1.1 2.4E-05 35.7 7.4 91 193-299 4-97 (116)
361 KOG1227 Putative methyltransfe 91.1 0.083 1.8E-06 49.5 0.8 96 184-293 194-290 (351)
362 PF07757 AdoMet_MTase: Predict 91.1 0.19 4.2E-06 39.9 2.7 32 184-216 58-89 (112)
363 COG3510 CmcI Cephalosporin hyd 91.1 1.1 2.5E-05 39.4 7.6 104 185-298 70-180 (237)
364 KOG1253 tRNA methyltransferase 90.9 0.22 4.7E-06 49.8 3.4 108 184-300 109-218 (525)
365 PLN02178 cinnamyl-alcohol dehy 90.8 1.2 2.6E-05 43.7 8.8 92 183-296 177-271 (375)
366 PF11899 DUF3419: Protein of u 90.5 0.52 1.1E-05 46.4 5.7 79 214-298 256-334 (380)
367 cd08263 Zn_ADH10 Alcohol dehyd 90.4 0.91 2E-05 44.2 7.5 101 180-297 183-286 (367)
368 cd05279 Zn_ADH1 Liver alcohol 90.4 1.1 2.4E-05 43.7 8.0 106 177-297 176-284 (365)
369 COG1062 AdhC Zn-dependent alco 90.3 1 2.2E-05 43.2 7.2 110 175-300 176-288 (366)
370 cd05281 TDH Threonine dehydrog 90.1 2.5 5.4E-05 40.6 10.2 99 182-297 161-261 (341)
371 cd00315 Cyt_C5_DNA_methylase C 90.1 0.62 1.3E-05 43.8 5.7 68 187-267 2-70 (275)
372 PF11599 AviRa: RRNA methyltra 90.0 0.88 1.9E-05 40.8 6.1 151 143-298 13-214 (246)
373 cd08235 iditol_2_DH_like L-idi 89.9 1.1 2.5E-05 42.8 7.6 101 178-296 159-263 (343)
374 cd08287 FDH_like_ADH3 formalde 89.8 1.2 2.7E-05 42.6 7.8 99 179-297 163-267 (345)
375 PRK10083 putative oxidoreducta 89.7 2.2 4.8E-05 40.8 9.4 102 176-296 152-257 (339)
376 cd08240 6_hydroxyhexanoate_dh_ 89.5 3.4 7.5E-05 39.7 10.6 96 183-296 174-272 (350)
377 COG1568 Predicted methyltransf 89.4 1.6 3.4E-05 40.7 7.5 107 184-300 152-262 (354)
378 cd08269 Zn_ADH9 Alcohol dehydr 89.3 1.8 3.9E-05 40.7 8.3 103 178-297 123-228 (312)
379 cd08260 Zn_ADH6 Alcohol dehydr 89.0 1.4 3E-05 42.4 7.4 102 178-296 159-262 (345)
380 cd05284 arabinose_DH_like D-ar 89.0 1.2 2.6E-05 42.6 6.9 98 181-296 164-264 (340)
381 PF02036 SCP2: SCP-2 sterol tr 88.9 1.7 3.6E-05 33.8 6.6 60 9-72 35-94 (102)
382 KOG0023 Alcohol dehydrogenase, 88.7 3.1 6.7E-05 39.7 9.0 106 177-301 174-283 (360)
383 PLN02494 adenosylhomocysteinas 88.7 2.1 4.6E-05 43.2 8.5 99 173-298 241-341 (477)
384 cd08265 Zn_ADH3 Alcohol dehydr 88.5 2.1 4.6E-05 42.0 8.5 103 180-297 199-306 (384)
385 cd05283 CAD1 Cinnamyl alcohol 88.4 3.5 7.7E-05 39.5 9.8 99 178-297 163-262 (337)
386 TIGR00692 tdh L-threonine 3-de 88.4 1.4 2.9E-05 42.4 6.9 99 182-297 159-260 (340)
387 cd08266 Zn_ADH_like1 Alcohol d 88.1 4.5 9.8E-05 38.2 10.3 103 177-297 159-264 (342)
388 KOG1198 Zinc-binding oxidoredu 88.0 1.8 3.9E-05 42.1 7.5 113 171-300 138-258 (347)
389 PRK08306 dipicolinate synthase 87.9 4.8 0.0001 38.3 10.1 87 184-295 151-238 (296)
390 cd08243 quinone_oxidoreductase 87.8 6.9 0.00015 36.6 11.3 99 179-297 137-237 (320)
391 cd08241 QOR1 Quinone oxidoredu 87.7 2.6 5.7E-05 39.3 8.3 100 179-296 134-236 (323)
392 PF02737 3HCDH_N: 3-hydroxyacy 87.1 4.8 0.0001 35.2 9.0 98 187-300 1-116 (180)
393 COG0686 Ald Alanine dehydrogen 87.1 1.3 2.9E-05 41.9 5.6 96 186-295 169-265 (371)
394 cd08291 ETR_like_1 2-enoyl thi 86.6 1.5 3.3E-05 41.8 6.0 96 184-297 142-241 (324)
395 PLN02702 L-idonate 5-dehydroge 86.5 6.1 0.00013 38.3 10.3 105 178-297 175-284 (364)
396 KOG3924 Putative protein methy 86.4 3.3 7.1E-05 40.5 8.0 127 164-297 172-307 (419)
397 PRK05396 tdh L-threonine 3-deh 86.3 2.2 4.8E-05 40.9 7.1 97 183-297 162-262 (341)
398 COG2130 Putative NADP-dependen 86.3 12 0.00026 35.5 11.4 106 175-297 141-248 (340)
399 cd08284 FDH_like_2 Glutathione 86.3 7.6 0.00017 37.1 10.8 101 179-297 162-265 (344)
400 cd08299 alcohol_DH_class_I_II_ 86.2 6.5 0.00014 38.4 10.4 49 177-225 183-233 (373)
401 COG3315 O-Methyltransferase in 86.2 3.5 7.6E-05 39.2 8.1 130 168-299 76-210 (297)
402 PRK07502 cyclohexadienyl dehyd 86.2 6.2 0.00013 37.5 10.0 87 186-295 7-97 (307)
403 PRK09422 ethanol-active dehydr 86.0 2.7 5.9E-05 40.1 7.5 102 178-297 156-260 (338)
404 PRK09260 3-hydroxybutyryl-CoA 86.0 5 0.00011 37.8 9.1 96 187-299 3-118 (288)
405 PRK07417 arogenate dehydrogena 86.0 5 0.00011 37.6 9.1 84 187-294 2-87 (279)
406 cd08282 PFDH_like Pseudomonas 85.7 3.6 7.7E-05 40.2 8.3 108 178-296 170-283 (375)
407 TIGR00497 hsdM type I restrict 85.5 11 0.00024 38.6 12.0 112 184-300 217-357 (501)
408 PF05206 TRM13: Methyltransfer 84.9 13 0.00029 34.5 11.1 103 182-289 16-124 (259)
409 cd08292 ETR_like_2 2-enoyl thi 84.6 2.2 4.8E-05 40.3 6.1 102 178-297 133-237 (324)
410 TIGR00518 alaDH alanine dehydr 84.4 2 4.4E-05 42.2 5.8 98 184-295 166-264 (370)
411 cd08270 MDR4 Medium chain dehy 84.3 14 0.0003 34.4 11.4 92 179-296 127-220 (305)
412 PRK05808 3-hydroxybutyryl-CoA 84.3 12 0.00027 35.0 10.9 92 187-296 5-116 (282)
413 PRK06522 2-dehydropantoate 2-r 84.2 9.8 0.00021 35.8 10.3 92 187-296 2-98 (304)
414 cd08274 MDR9 Medium chain dehy 84.2 8.7 0.00019 36.7 10.1 99 178-296 171-271 (350)
415 cd08297 CAD3 Cinnamyl alcohol 84.0 3.4 7.4E-05 39.5 7.2 100 180-297 161-264 (341)
416 cd08289 MDR_yhfp_like Yhfp put 83.9 5.4 0.00012 37.7 8.4 95 184-297 146-242 (326)
417 PRK07066 3-hydroxybutyryl-CoA 83.8 6.5 0.00014 37.9 8.8 98 186-298 8-119 (321)
418 PRK14620 NAD(P)H-dependent gly 83.5 7 0.00015 37.5 9.1 94 187-296 2-104 (326)
419 cd08256 Zn_ADH2 Alcohol dehydr 83.4 3.2 7E-05 39.9 6.7 101 178-296 168-272 (350)
420 cd05286 QOR2 Quinone oxidoredu 83.3 3.1 6.6E-05 38.8 6.4 101 178-296 130-233 (320)
421 COG0287 TyrA Prephenate dehydr 83.2 6.4 0.00014 37.1 8.4 88 186-294 4-94 (279)
422 cd08246 crotonyl_coA_red croto 83.1 3 6.4E-05 41.0 6.4 46 180-225 189-236 (393)
423 PRK06035 3-hydroxyacyl-CoA deh 82.6 9.9 0.00022 35.8 9.6 92 186-295 4-118 (291)
424 PF03514 GRAS: GRAS domain fam 82.4 11 0.00025 37.0 10.1 118 174-296 100-242 (374)
425 PRK13699 putative methylase; P 82.2 5.4 0.00012 36.3 7.3 21 277-297 51-71 (227)
426 cd08262 Zn_ADH8 Alcohol dehydr 82.0 11 0.00023 36.0 9.8 105 177-297 154-263 (341)
427 PF05050 Methyltransf_21: Meth 81.7 4.8 0.0001 33.8 6.5 52 190-241 1-59 (167)
428 cd05282 ETR_like 2-enoyl thioe 81.7 3.3 7.1E-05 39.0 6.0 98 181-296 135-235 (323)
429 PF02153 PDH: Prephenate dehyd 81.5 4.8 0.0001 37.4 6.8 74 199-295 2-76 (258)
430 cd08244 MDR_enoyl_red Possible 81.4 4.1 8.8E-05 38.4 6.5 102 177-296 135-239 (324)
431 PRK03562 glutathione-regulated 81.2 11 0.00023 39.9 10.0 98 185-298 400-498 (621)
432 PRK13771 putative alcohol dehy 81.2 13 0.00029 35.2 10.0 96 178-296 156-253 (334)
433 cd08258 Zn_ADH4 Alcohol dehydr 81.2 8.5 0.00018 36.3 8.6 103 177-297 157-263 (306)
434 PRK03659 glutathione-regulated 81.0 6 0.00013 41.6 8.1 99 186-300 401-500 (601)
435 TIGR02817 adh_fam_1 zinc-bindi 80.9 9.2 0.0002 36.3 8.8 95 185-297 149-246 (336)
436 COG4017 Uncharacterized protei 80.7 7.3 0.00016 34.4 7.0 82 170-272 30-112 (254)
437 cd05564 PTS_IIB_chitobiose_lic 80.6 8 0.00017 30.1 6.8 66 223-305 19-84 (96)
438 PF01210 NAD_Gly3P_dh_N: NAD-d 80.5 6.4 0.00014 33.5 6.8 94 187-297 1-102 (157)
439 PRK00094 gpsA NAD(P)H-dependen 80.5 17 0.00036 34.6 10.4 92 187-295 3-102 (325)
440 PTZ00075 Adenosylhomocysteinas 80.4 4.1 9E-05 41.2 6.3 96 174-297 242-340 (476)
441 PF03686 UPF0146: Uncharacteri 80.3 5.6 0.00012 32.7 5.9 88 185-298 14-102 (127)
442 PTZ00354 alcohol dehydrogenase 80.3 23 0.00049 33.4 11.3 100 180-296 136-238 (334)
443 PRK10669 putative cation:proto 80.3 11 0.00024 39.2 9.7 97 186-298 418-515 (558)
444 PRK06130 3-hydroxybutyryl-CoA 80.2 14 0.0003 35.1 9.7 92 186-294 5-111 (311)
445 KOG1098 Putative SAM-dependent 80.1 2.2 4.7E-05 44.0 4.2 36 182-217 42-79 (780)
446 cd05288 PGDH Prostaglandin deh 79.9 16 0.00036 34.4 10.2 102 178-296 139-242 (329)
447 PRK07530 3-hydroxybutyryl-CoA 79.9 21 0.00045 33.6 10.7 93 186-296 5-117 (292)
448 COG1255 Uncharacterized protei 79.5 11 0.00025 30.3 7.2 87 184-297 14-101 (129)
449 PF05711 TylF: Macrocin-O-meth 79.2 16 0.00035 33.8 9.3 122 167-298 56-212 (248)
450 PRK08293 3-hydroxybutyryl-CoA 79.1 17 0.00037 34.1 9.9 94 186-296 4-118 (287)
451 cd08276 MDR7 Medium chain dehy 78.9 11 0.00023 35.6 8.5 101 179-296 155-257 (336)
452 PRK07819 3-hydroxybutyryl-CoA 78.8 24 0.00052 33.2 10.7 97 186-298 6-121 (286)
453 cd08267 MDR1 Medium chain dehy 78.6 30 0.00065 32.2 11.5 42 181-223 140-183 (319)
454 TIGR02823 oxido_YhdH putative 78.5 13 0.00029 35.0 9.0 97 179-296 139-239 (323)
455 cd05213 NAD_bind_Glutamyl_tRNA 78.5 26 0.00056 33.5 11.0 38 183-220 176-215 (311)
456 cd05195 enoyl_red enoyl reduct 78.5 12 0.00026 34.0 8.6 104 177-296 101-207 (293)
457 COG1748 LYS9 Saccharopine dehy 78.5 8.3 0.00018 38.1 7.6 72 186-266 2-75 (389)
458 PRK05225 ketol-acid reductoiso 78.3 4.2 9E-05 40.9 5.5 90 184-298 35-131 (487)
459 COG0863 DNA modification methy 78.2 9.2 0.0002 35.9 7.8 58 171-230 210-267 (302)
460 cd08250 Mgc45594_like Mgc45594 77.8 24 0.00052 33.3 10.6 100 178-295 133-234 (329)
461 KOG0821 Predicted ribosomal RN 77.8 5.1 0.00011 36.2 5.3 73 171-246 37-109 (326)
462 PRK10754 quinone oxidoreductas 77.8 10 0.00023 35.8 8.1 101 179-297 135-238 (327)
463 PF03807 F420_oxidored: NADP o 77.7 6.9 0.00015 29.8 5.6 83 188-294 2-90 (96)
464 PF12692 Methyltransf_17: S-ad 77.6 7.1 0.00015 33.0 5.8 120 167-299 12-135 (160)
465 cd05289 MDR_like_2 alcohol deh 77.4 32 0.0007 31.6 11.3 95 181-297 141-237 (309)
466 PF11312 DUF3115: Protein of u 77.4 9.4 0.0002 36.4 7.3 121 184-305 86-249 (315)
467 PRK08507 prephenate dehydrogen 76.8 14 0.00031 34.4 8.6 82 187-294 2-87 (275)
468 TIGR00853 pts-lac PTS system, 76.6 13 0.00029 28.8 6.9 84 187-305 5-88 (95)
469 cd08252 AL_MDR Arginate lyase 76.5 24 0.00051 33.4 10.2 101 178-296 138-246 (336)
470 cd01065 NAD_bind_Shikimate_DH 76.1 31 0.00067 28.6 9.7 70 183-267 17-89 (155)
471 PRK06129 3-hydroxyacyl-CoA deh 75.9 37 0.0008 32.3 11.2 40 186-226 3-44 (308)
472 PF02558 ApbA: Ketopantoate re 75.8 16 0.00034 30.4 7.8 92 188-297 1-100 (151)
473 PF04072 LCM: Leucine carboxyl 75.4 9.4 0.0002 33.3 6.5 99 184-284 77-182 (183)
474 TIGR02824 quinone_pig3 putativ 75.2 11 0.00025 35.0 7.5 102 177-296 132-236 (325)
475 PRK05708 2-dehydropantoate 2-r 75.1 33 0.00072 32.6 10.7 96 186-295 3-101 (305)
476 PLN02545 3-hydroxybutyryl-CoA 74.9 44 0.00096 31.4 11.4 92 186-295 5-116 (295)
477 PRK09496 trkA potassium transp 74.8 46 0.001 33.2 12.2 72 184-266 230-304 (453)
478 PLN02256 arogenate dehydrogena 74.8 24 0.00053 33.6 9.6 90 179-293 30-122 (304)
479 PRK15001 SAM-dependent 23S rib 74.7 28 0.00061 34.3 10.2 93 187-298 47-142 (378)
480 cd08268 MDR2 Medium chain dehy 74.5 17 0.00036 33.9 8.5 100 179-296 139-241 (328)
481 cd08264 Zn_ADH_like2 Alcohol d 74.0 21 0.00046 33.6 9.1 95 178-297 156-252 (325)
482 PRK09496 trkA potassium transp 73.9 33 0.00072 34.3 10.9 95 187-298 2-99 (453)
483 PRK12921 2-dehydropantoate 2-r 73.8 31 0.00067 32.4 10.1 89 187-295 2-99 (305)
484 KOG2912 Predicted DNA methylas 73.8 9 0.0002 36.5 6.1 94 171-267 87-186 (419)
485 PF00145 DNA_methylase: C-5 cy 73.4 4 8.7E-05 38.7 3.9 66 187-266 2-68 (335)
486 TIGR02437 FadB fatty oxidation 73.4 19 0.0004 38.8 9.3 98 186-299 314-429 (714)
487 COG2933 Predicted SAM-dependen 73.3 17 0.00037 33.9 7.5 105 165-291 192-296 (358)
488 PRK11524 putative methyltransf 73.3 3.8 8.3E-05 38.6 3.7 57 235-298 8-80 (284)
489 smart00829 PKS_ER Enoylreducta 73.1 17 0.00036 33.1 7.9 102 178-297 98-204 (288)
490 PRK11064 wecC UDP-N-acetyl-D-m 72.6 38 0.00082 33.8 10.8 36 186-222 4-41 (415)
491 KOG1201 Hydroxysteroid 17-beta 72.6 15 0.00033 34.7 7.3 80 184-268 37-123 (300)
492 TIGR02441 fa_ox_alpha_mit fatt 72.6 18 0.00038 39.1 8.9 99 186-300 336-452 (737)
493 PRK11154 fadJ multifunctional 72.6 25 0.00054 37.8 10.0 99 186-299 310-426 (708)
494 PF10727 Rossmann-like: Rossma 72.3 16 0.00035 30.1 6.7 92 184-299 9-105 (127)
495 PRK12439 NAD(P)H-dependent gly 71.7 35 0.00076 33.0 10.1 94 184-295 6-108 (341)
496 cd08253 zeta_crystallin Zeta-c 71.4 18 0.00038 33.7 7.8 99 179-296 139-241 (325)
497 TIGR01915 npdG NADPH-dependent 70.9 60 0.0013 29.1 10.8 92 187-298 2-100 (219)
498 TIGR00675 dcm DNA-methyltransf 70.9 7.9 0.00017 37.1 5.3 64 188-265 1-65 (315)
499 cd08251 polyketide_synthase po 70.8 14 0.0003 34.1 6.9 101 178-296 114-217 (303)
500 PF13241 NAD_binding_7: Putati 70.4 49 0.0011 25.8 9.0 88 184-301 6-94 (103)
No 1
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=100.00 E-value=1.2e-54 Score=424.02 Aligned_cols=311 Identities=28% Similarity=0.482 Sum_probs=265.4
Q ss_pred CceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhHHHHHHHHHhcCCCCccccccccCCCCCCcccccccchh
Q 047022 31 LKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGLLNLFPIVIANQDLDSSTSKLKKSWGPSQNTSWLKPKKT 110 (381)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (381)
|+++|+|+|++++.+++.+|+||||||||+|+|++++ |.+++..++.|... .... ..+. .
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~lg~~eaY~~g~~~~~~----l~~~~~~~~~~~~~--~~~~--~~~~------------~ 94 (383)
T PRK11705 35 RPWDIQVHNPRFFKRVLQEGSLGLGESYMDGWWDCDR----LDEFFSRVLRAGLD--EKLP--HHLK------------D 94 (383)
T ss_pred CCeEEEECCHHHHHHHhccCCccHHHHHHcCCeecCC----HHHHHHHHHHccch--hhhh--hhHH------------H
Confidence 6789999999999999999999999999999999985 99999988887521 1000 0000 0
Q ss_pred hhHHh-hhhcccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEE
Q 047022 111 KKYFF-RHISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVL 189 (381)
Q Consensus 111 ~~~~~-~~~~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VL 189 (381)
....+ ....+.|++++++++|++|||++|+| |++++|++|+|||+||.. .++|++||.++++.+++++.++++.+||
T Consensus 95 ~~~~~~~~~~~~n~~~~~~~~i~~hYd~~n~~-y~l~ld~~m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVL 172 (383)
T PRK11705 95 TLRILRARLFNLQSKKRAWIVGKEHYDLGNDL-FEAMLDPRMQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVL 172 (383)
T ss_pred HHHHHHHHHhccCChhhHHHhhhhhcCCcHHH-HHHhcCCCCcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 01111 12456789999999999999999999 999999999999999975 4789999999999999999999999999
Q ss_pred EecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh
Q 047022 190 EIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI 269 (381)
Q Consensus 190 DiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l 269 (381)
|||||+|.++..++++++++|+|+|+|++|++.|+++.. ++ .+++... |+.+++ ++||.|++++++
T Consensus 173 DIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~-D~~~l~---------~~fD~Ivs~~~~ 238 (383)
T PRK11705 173 DIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQ-DYRDLN---------GQFDRIVSVGMF 238 (383)
T ss_pred EeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEEC-chhhcC---------CCCCEEEEeCch
Confidence 999999999999998778999999999999999999874 33 4888888 887664 789999999999
Q ss_pred HhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecch
Q 047022 270 EAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+|++..++..+++++.++|||||++++....... .......|+.+|+||++.+|+++++... .+ .||++.++++++.
T Consensus 239 ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~-~~~~~~~~i~~yifp~g~lps~~~i~~~-~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 239 EHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK-TDTNVDPWINKYIFPNGCLPSVRQIAQA-SE-GLFVMEDWHNFGA 315 (383)
T ss_pred hhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC-CCCCCCCCceeeecCCCcCCCHHHHHHH-HH-CCcEEEEEecChh
Confidence 9998888899999999999999998776533221 1223467999999999999999997655 43 5899999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 350 HYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 350 ~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
||++||+.|+++|+++++++.+ +|+++|+||
T Consensus 316 hy~~TL~~W~~~f~~~~~~~~~-~~~~~~~r~ 346 (383)
T PRK11705 316 DYDRTLMAWHENFEAAWPELAD-NYSERFYRM 346 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHH
Confidence 9999999999999999999988 699999986
No 2
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.7e-55 Score=403.14 Aligned_cols=249 Identities=36% Similarity=0.644 Sum_probs=231.1
Q ss_pred hhcccCChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch
Q 047022 117 HISRKNTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWG 196 (381)
Q Consensus 117 ~~~~~~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G 196 (381)
++..+++.+++.++|+.|||++|+| |++|+|++|.|||+||+.++.+|++||.++++.+++++.++||++|||||||||
T Consensus 6 ~~~~~~~~~~~~~~i~~HYDl~n~f-y~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 6 RLLNRHSKRRAAENIQAHYDLSNDF-YRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred cccccccccchhhhhhhHhhcchHH-HHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 3445577889999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhc
Q 047022 197 TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY 276 (381)
Q Consensus 197 ~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~ 276 (381)
.+++++|++++++|+|+|+|++|.+.+++++...|+.++++++.. |++++. +.||.|+|++|+||++.++
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~-d~rd~~---------e~fDrIvSvgmfEhvg~~~ 154 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ-DYRDFE---------EPFDRIVSVGMFEHVGKEN 154 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec-cccccc---------cccceeeehhhHHHhCccc
Confidence 999999999999999999999999999999999999999999999 999988 5699999999999999999
Q ss_pred HHHHHHHHHhccccCceEE---EEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHH
Q 047022 277 MEELFSCCESLLAENGLSC---STVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~---i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
++.+|+.+.++|+|||+++ |+.+...+. ....||.+||||||.+|+++++.+... ++||.+.+.++++.||++
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lPs~~~i~~~~~-~~~~~v~~~~~~~~hYa~ 230 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELPSISEILELAS-EAGFVVLDVESLRPHYAR 230 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCCCHHHHHHHHH-hcCcEEehHhhhcHHHHH
Confidence 9999999999999999944 344433322 568999999999999999999977655 589999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 354 KLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 354 tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
|++.|+++|+++++++.++ ++|+|.||
T Consensus 231 Tl~~W~~~f~~~~~~a~~~-~~e~~~r~ 257 (283)
T COG2230 231 TLRLWRERFEANRDEAIAL-YDERFYRM 257 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 9999999999999999999 99999986
No 3
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=100.00 E-value=2.3e-54 Score=403.03 Aligned_cols=246 Identities=41% Similarity=0.689 Sum_probs=196.9
Q ss_pred ChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHH
Q 047022 123 TLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEI 202 (381)
Q Consensus 123 ~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l 202 (381)
++++++++|++|||++|+| |++|+|++|+|||++|++++++|++||.+|++.++++++++||++|||||||||.+++++
T Consensus 2 ~~~~~~~~i~~hYDl~ndf-y~l~Ld~~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~ 80 (273)
T PF02353_consen 2 SKKQSRENISAHYDLGNDF-YRLFLDPTMKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYA 80 (273)
T ss_dssp -S---HHHHHHHHTS-HHH-HTTTS-TT---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHH
T ss_pred ccchHHHHHHHHcCCcHHH-HHHhcCCCCCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHH
Confidence 5678999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHH
Q 047022 203 VRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282 (381)
Q Consensus 203 a~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~ 282 (381)
++++|++|+|+++|++|.+.+++++...|+.+++++..+ |+++++ .+||.|+|++|+||++.++++.+|+
T Consensus 81 a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~-D~~~~~---------~~fD~IvSi~~~Ehvg~~~~~~~f~ 150 (273)
T PF02353_consen 81 AERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ-DYRDLP---------GKFDRIVSIEMFEHVGRKNYPAFFR 150 (273)
T ss_dssp HHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES--GGG------------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred HHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe-eccccC---------CCCCEEEEEechhhcChhHHHHHHH
Confidence 998899999999999999999999999999999999999 999987 5999999999999999999999999
Q ss_pred HHHhccccCceEEE---EcCCCCCCCCCC-chhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHH
Q 047022 283 CCESLLAENGLSCS---TVPDQCYDEHSL-GPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRW 358 (381)
Q Consensus 283 ~~~~~LkpgG~~~i---~~~~~~~~~~~~-~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W 358 (381)
++.++|||||++++ +.+...+..... ..+|+.+||||||.+|++++++..+. ++||++.++++++.||++|++.|
T Consensus 151 ~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~-~~~l~v~~~~~~~~hY~~Tl~~W 229 (273)
T PF02353_consen 151 KISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAE-DAGLEVEDVENLGRHYARTLRAW 229 (273)
T ss_dssp HHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHH-HTT-EEEEEEE-HHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHh-cCCEEEEEEEEcCcCHHHHHHHH
Confidence 99999999999654 443333333222 24999999999999999999987555 58999999999999999999999
Q ss_pred HHHHHHhHHHHHhcCCCcccccC
Q 047022 359 RQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 359 ~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
+++|.++++++.++ |+++|+||
T Consensus 230 ~~~f~~~~~~i~~~-~~~~f~r~ 251 (273)
T PF02353_consen 230 RENFDANREEIIAL-FDEEFYRM 251 (273)
T ss_dssp HHHHHHTHHHHHHH-SHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHH
Confidence 99999999999999 99999986
No 4
>PLN02244 tocopherol O-methyltransferase
Probab=99.94 E-value=1.3e-25 Score=217.12 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=176.7
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEecCC
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSK--HEDLEVGQIRKVSVLIEKVKL-----VKGQEVLEIGCG 194 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~VLDiGcG 194 (381)
.++...+++|+.|||..+++ |+.+++++|+ .+||..+ ..++.++|.+.++.+++.+.+ +++.+|||||||
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~-~e~~~g~~~h--~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG 128 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGV-WEDVWGEHMH--HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCG 128 (340)
T ss_pred cchhhHHHHHHHHHccchHH-HHHHhCCcce--eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCC
Confidence 45567888999999999999 9999988764 6889764 678999999999999999987 688999999999
Q ss_pred chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh
Q 047022 195 WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH 274 (381)
Q Consensus 195 ~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~ 274 (381)
+|.++..++++.+++|+|+|+|+.|++.++++....++.+++++..+ |+.+++ +++++||+|++..+++|++
T Consensus 129 ~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~-D~~~~~------~~~~~FD~V~s~~~~~h~~- 200 (340)
T PLN02244 129 IGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVA-DALNQP------FEDGQFDLVWSMESGEHMP- 200 (340)
T ss_pred CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEc-CcccCC------CCCCCccEEEECCchhccC-
Confidence 99999999987788999999999999999999988888888999999 998887 5678999999999999995
Q ss_pred hcHHHHHHHHHhccccCceEEEEcCCCCCCC-----CCCc-h----hhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 275 DYMEELFSCCESLLAENGLSCSTVPDQCYDE-----HSLG-P----GFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 275 ~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~-----~~~~-~----~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
+...+++++.++|||||+++++........ .... . .+...|..|. ..+..++.+.+. ++||..+.+
T Consensus 201 -d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~--~~s~~~~~~~l~-~aGf~~v~~ 276 (340)
T PLN02244 201 -DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPA--WCSTSDYVKLAE-SLGLQDIKT 276 (340)
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCC--CCCHHHHHHHHH-HCCCCeeEe
Confidence 578999999999999999888654322111 1000 1 1112233332 236777755554 699999999
Q ss_pred EecchhHHHHHH
Q 047022 345 ENIETHYYQKLR 356 (381)
Q Consensus 345 ~~~~~~y~~tl~ 356 (381)
+++..+..+...
T Consensus 277 ~d~s~~v~~~~~ 288 (340)
T PLN02244 277 EDWSEHVAPFWP 288 (340)
T ss_pred eeCcHHHHHHHH
Confidence 998877655443
No 5
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.91 E-value=1.8e-23 Score=190.91 Aligned_cols=176 Identities=17% Similarity=0.208 Sum_probs=145.0
Q ss_pred CEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
++|||||||+|.++..+++.. +++++|+|+|+++++.+++++...++.+++++... |+...+ ..++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~-d~~~~~-------~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYR-DSAKDP-------FPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEec-ccccCC-------CCCCCCEee
Confidence 379999999999999999874 68999999999999999999999899889999999 986655 236899999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHL 344 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~ 344 (381)
+..+++|++ ++..+++++.++|||||.+++......... ......+. ..+++..++.+.+.+ +||.+++.
T Consensus 73 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~------~~~~s~~~~~~~l~~-~Gf~~~~~ 142 (224)
T smart00828 73 GFEVIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLS-AIEHEETT------SYLVTREEWAELLAR-NNLRVVEG 142 (224)
T ss_pred hHHHHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCc-cccccccc------cccCCHHHHHHHHHH-CCCeEEEe
Confidence 999999994 589999999999999999887654321100 01111121 236788888666664 89999999
Q ss_pred EecchhHHHHHHHHHHHHHHhHHHHHhcCCCcccccC
Q 047022 345 ENIETHYYQKLRRWRQKFREKHSEILALGFNEKFVRT 381 (381)
Q Consensus 345 ~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f~r~ 381 (381)
++++.||+.++ |..+|.++++++...++|++|.||
T Consensus 143 ~~~~~~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~ 177 (224)
T smart00828 143 VDASLEIANFL--YDPGFEDNLERLYQDDLDEVTKRH 177 (224)
T ss_pred EECcHhHhhhc--cChhHHHHHHHhccccchHHHHHH
Confidence 99999999876 999999999999998899988875
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.90 E-value=1.3e-22 Score=183.89 Aligned_cols=192 Identities=19% Similarity=0.267 Sum_probs=147.0
Q ss_pred ChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHH
Q 047022 123 TLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEI 202 (381)
Q Consensus 123 ~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~l 202 (381)
......++|+..||+.|++ .+..++. ..-+.+++.+.+++|.+|||+|||||-++..+
T Consensus 12 ~v~~vF~~ia~~YD~~n~~-~S~g~~~---------------------~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~ 69 (238)
T COG2226 12 KVQKVFDKVAKKYDLMNDL-MSFGLHR---------------------LWRRALISLLGIKPGDKVLDVACGTGDMALLL 69 (238)
T ss_pred HHHHHHHhhHHHHHhhccc-ccCcchH---------------------HHHHHHHHhhCCCCCCEEEEecCCccHHHHHH
Confidence 3456677899999999988 6665542 22236777777779999999999999999999
Q ss_pred HHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHH
Q 047022 203 VRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELF 281 (381)
Q Consensus 203 a~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l 281 (381)
++. ..++|+++|+|+.|++.|+++....+... ++|+++ |++++| |++++||+|.+...+.+++ +++.+|
T Consensus 70 ~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~-dAe~LP------f~D~sFD~vt~~fglrnv~--d~~~aL 139 (238)
T COG2226 70 AKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVG-DAENLP------FPDNSFDAVTISFGLRNVT--DIDKAL 139 (238)
T ss_pred HHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEe-chhhCC------CCCCccCEEEeeehhhcCC--CHHHHH
Confidence 998 44799999999999999999999888775 999999 999999 8999999999999999994 699999
Q ss_pred HHHHhccccCceEEEEc-CCCCCCCCCCc-hhhhhhhccCC-------------------CCCCCHHHHHHHHHhcCCcE
Q 047022 282 SCCESLLAENGLSCSTV-PDQCYDEHSLG-PGFIKEYIFPS-------------------GCLPSLRRVTSAMTSSSRLC 340 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~-~~~~~~~~~~~-~~~i~~yi~pg-------------------g~lp~~~~~~~~l~~~~Gf~ 340 (381)
++++|+|||||++++.. ..+........ ..|..+++.|- -..|+.+++.+.++ ++||+
T Consensus 140 ~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~-~~gf~ 218 (238)
T COG2226 140 KEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIE-KAGFE 218 (238)
T ss_pred HHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHH-hcCce
Confidence 99999999999965543 22221111111 12333334331 12677777765555 48998
Q ss_pred EEEEEec
Q 047022 341 VEHLENI 347 (381)
Q Consensus 341 v~~~~~~ 347 (381)
.+..+++
T Consensus 219 ~i~~~~~ 225 (238)
T COG2226 219 EVRYENL 225 (238)
T ss_pred EEeeEee
Confidence 7765554
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.89 E-value=2e-21 Score=181.51 Aligned_cols=193 Identities=19% Similarity=0.223 Sum_probs=154.5
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
....+++.+.+.++.+|||||||+|..+..+++..+++|+++|+|+.+++.|+++... .+++.+..+ |+.+.+
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~-D~~~~~--- 112 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAN-DILKKD--- 112 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEEC-CcccCC---
Confidence 3457888899999999999999999999999876788999999999999999988653 357999999 988766
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRVT 330 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~~ 330 (381)
+++++||+|++..++.|++..+...+++++.++|||||.++++.+...... ........++.. +..+++..++.
T Consensus 113 ---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 113 ---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIE--NWDEEFKAYIKKRKYTLIPIQEYG 187 (263)
T ss_pred ---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccccc--CcHHHHHHHHHhcCCCCCCHHHHH
Confidence 556899999999999999766789999999999999999888765332111 111122233222 23466788886
Q ss_pred HHHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCccc
Q 047022 331 SAMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKF 378 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f 378 (381)
+.+. ++||+++..++++.++...+..-.+.+.++.+++.+. |++++
T Consensus 188 ~~l~-~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 233 (263)
T PTZ00098 188 DLIK-SCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKE 233 (263)
T ss_pred HHHH-HCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHH
Confidence 6555 5899999999999999999999999999999999886 77654
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=2e-22 Score=184.28 Aligned_cols=141 Identities=23% Similarity=0.297 Sum_probs=86.9
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVR 204 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~ 204 (381)
....+.|+..||..|++ .+...+.. ++. .+++.+...+|.+|||+|||+|.++..+++
T Consensus 10 ~~~Fd~ia~~YD~~n~~-ls~g~~~~-------------------wr~--~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~ 67 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDL-LSFGQDRR-------------------WRR--KLIKLLGLRPGDRVLDVACGTGDVTRELAR 67 (233)
T ss_dssp -----------------------------------------------S--HHHHHHT--S--EEEEET-TTSHHHHHHGG
T ss_pred HHHHHHHHHHhCCCccc-cCCcHHHH-------------------HHH--HHHhccCCCCCCEEEEeCCChHHHHHHHHH
Confidence 34456788889988888 66655432 222 556666778999999999999999999988
Q ss_pred h--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHH
Q 047022 205 Q--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFS 282 (381)
Q Consensus 205 ~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~ 282 (381)
+ +..+|+|+|+|++|++.|+++....+.. +|++.++ |++++| +++++||+|++...+++++ ++...++
T Consensus 68 ~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~-da~~lp------~~d~sfD~v~~~fglrn~~--d~~~~l~ 137 (233)
T PF01209_consen 68 RVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQG-DAEDLP------FPDNSFDAVTCSFGLRNFP--DRERALR 137 (233)
T ss_dssp GSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE--BTTB--------S-TT-EEEEEEES-GGG-S--SHHHHHH
T ss_pred HCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEc-CHHHhc------CCCCceeEEEHHhhHHhhC--CHHHHHH
Confidence 7 3479999999999999999999988776 8999999 999998 7789999999999999995 5899999
Q ss_pred HHHhccccCceEEEE
Q 047022 283 CCESLLAENGLSCST 297 (381)
Q Consensus 283 ~~~~~LkpgG~~~i~ 297 (381)
+++|+|||||+++|.
T Consensus 138 E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 138 EMYRVLKPGGRLVIL 152 (233)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHHcCCCeEEEEe
Confidence 999999999996653
No 9
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=1e-20 Score=191.40 Aligned_cols=190 Identities=17% Similarity=0.195 Sum_probs=153.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+.+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+++++.|+++.. +...++++..+ |+...+
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~-d~~~~~---- 327 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVA-DCTKKT---- 327 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEc-CcccCC----
Confidence 35677777778899999999999999999998778899999999999999998765 44457999999 988776
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhcc-CCCCCCCHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIF-PSGCLPSLRRVTS 331 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~-pgg~lp~~~~~~~ 331 (381)
+++++||+|+|..+++|++ ++..+++++.++|||||.++++.+...... . ...+..++. .+..+++..++.+
T Consensus 328 --~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 328 --YPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGT--P-SPEFAEYIKQRGYDLHDVQAYGQ 400 (475)
T ss_pred --CCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCC--C-cHHHHHHHHhcCCCCCCHHHHHH
Confidence 4557899999999999994 689999999999999999888765432111 1 122233333 3456788888866
Q ss_pred HHHhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHhcCCCccc
Q 047022 332 AMTSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILALGFNEKF 378 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~~g~~~~f 378 (381)
.+. ++||+++.+++++.+|..++..|.+.+.++..++... +++..
T Consensus 401 ~l~-~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 445 (475)
T PLN02336 401 MLK-DAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEED 445 (475)
T ss_pred HHH-HCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHH
Confidence 555 5999999999999999999999999999999888765 66543
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.83 E-value=2.4e-19 Score=167.29 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=118.9
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEecCccccCcCC
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKE--AGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~--~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+++.+.+.++.+|||+|||+|.++..++++. ..+|+|+|+|++|++.|+++... ....+++++..+ |+.+++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-d~~~lp--- 140 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-DATDLP--- 140 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-ccccCC---
Confidence 4556677889999999999999999988763 36999999999999999887542 223347999999 999887
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-Cchhhhhhhc-cCC---------
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-LGPGFIKEYI-FPS--------- 320 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-~~~~~i~~yi-~pg--------- 320 (381)
+++++||+|++..+++|+ .++..+++++.++|||||++++.........+. ....|+.+.+ .|-
T Consensus 141 ---~~~~sfD~V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (261)
T PLN02233 141 ---FDDCYFDAITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKE 215 (261)
T ss_pred ---CCCCCEeEEEEecccccC--CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHH
Confidence 567899999999999999 468999999999999999987765432211110 0111111110 010
Q ss_pred --------CCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 321 --------GCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 321 --------g~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...++..++.+.+. ++||+.+...++.
T Consensus 216 y~~l~~s~~~f~s~~el~~ll~-~aGF~~~~~~~~~ 250 (261)
T PLN02233 216 YEYLKSSINEYLTGEELEKLAL-EAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHHhcCCHHHHHHHHH-HCCCCEEEEEEcC
Confidence 13567888866555 5899988766654
No 11
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.81 E-value=6.9e-20 Score=163.50 Aligned_cols=159 Identities=25% Similarity=0.381 Sum_probs=122.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
-+|.+|||||||.|.++..+|+. |+.|+|+|+++.+++.|+.+..+.++. +++.+. ..+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~-~~edl~------~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN--IDYRQA-TVEDLA------SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc--ccchhh-hHHHHH------hcCCCccE
Confidence 37899999999999999999995 999999999999999999999988875 778887 777776 23389999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCCC-----CCCHHHHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSGC-----LPSLRRVTSAMT 334 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg~-----lp~~~~~~~~l~ 334 (381)
|+|.+|+||+ +++..+++.|.+++||||.+++++++.....+.. ...++-+ +.|.|. +-..+|+...+.
T Consensus 128 V~cmEVlEHv--~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~ 204 (243)
T COG2227 128 VTCMEVLEHV--PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLL 204 (243)
T ss_pred EEEhhHHHcc--CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcc
Confidence 9999999999 4689999999999999999999999876554421 1222333 456654 234556655554
Q ss_pred hcCCcEEEEEEecchhHHHHHHH
Q 047022 335 SSSRLCVEHLENIETHYYQKLRR 357 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~~y~~tl~~ 357 (381)
.+++.+.+.. +.+|.+....
T Consensus 205 -~~~~~~~~~~--g~~y~p~~~~ 224 (243)
T COG2227 205 -GANLKIIDRK--GLTYNPLTNS 224 (243)
T ss_pred -cCCceEEeec--ceEeccccce
Confidence 4688886654 3444443333
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.81 E-value=7.2e-19 Score=167.75 Aligned_cols=164 Identities=20% Similarity=0.331 Sum_probs=125.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||||||+|.++..+++ .+++|+|+|+|+++++.|+++....+...++++..+ |+++++ +..++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~-dae~l~------~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT-TAEKLA------DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec-CHHHhh------hccCCCCE
Confidence 4677999999999999999987 589999999999999999988766555568999999 998876 34578999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC---CchhhhhhhccCCCC----CCCHHHHHHHHHh
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS---LGPGFIKEYIFPSGC----LPSLRRVTSAMTS 335 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~---~~~~~i~~yi~pgg~----lp~~~~~~~~l~~ 335 (381)
|++.++++|+. ++..+++++.++|||||.+++++.+.....+. ....++.+++.++.+ ..+..++.+.+.
T Consensus 202 Vi~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~- 278 (322)
T PLN02396 202 VLSLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ- 278 (322)
T ss_pred EEEhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH-
Confidence 99999999994 68999999999999999999998765432211 112334444444432 467888866665
Q ss_pred cCCcEEEEEEecchhHHHHHHHHH
Q 047022 336 SSRLCVEHLENIETHYYQKLRRWR 359 (381)
Q Consensus 336 ~~Gf~v~~~~~~~~~y~~tl~~W~ 359 (381)
++||+++++..+ .|.+....|.
T Consensus 279 ~aGf~i~~~~G~--~~~p~~~~w~ 300 (322)
T PLN02396 279 RASVDVKEMAGF--VYNPITGRWL 300 (322)
T ss_pred HcCCeEEEEeee--EEcCcCCeEE
Confidence 589999877554 3445444453
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.81 E-value=4.8e-19 Score=162.34 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=121.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..++..+.++++.+|||+|||+|.++..+++. ++.+|+|+|+|+++++.++++....++ +++++..+ |..+++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~-d~~~~~--- 109 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHG-NAMELP--- 109 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEe-chhcCC---
Confidence 46777888889999999999999999999886 357999999999999999999887776 48999999 998876
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccC-----------
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFP----------- 319 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~p----------- 319 (381)
++.++||+|++..+++|+ .++..+++++.++|+|||++++..+.... ..+.....++.+++.|
T Consensus 110 ---~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 184 (231)
T TIGR02752 110 ---FDDNSFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYK 184 (231)
T ss_pred ---CCCCCccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHH
Confidence 456899999999999998 45789999999999999997765433211 1100000000000001
Q ss_pred --------CCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 320 --------SGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 320 --------gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
....|+..++.+.+. ++||++++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~l~-~aGf~~~~~~~~~ 220 (231)
T TIGR02752 185 EYSWLQESTRDFPGMDELAEMFQ-EAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-HcCCCeeEEEEcc
Confidence 113567788755555 5899988876653
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=2.9e-18 Score=159.71 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
++.+..+++.+. .++.+|||+|||+|.++..+++. +.+|+++|+|++|++.|+++....++.+++++..+ |+.++++
T Consensus 31 ~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~-d~~~l~~ 107 (255)
T PRK11036 31 WQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC-AAQDIAQ 107 (255)
T ss_pred HHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc-CHHHHhh
Confidence 345567777776 55679999999999999999986 88999999999999999999998888778999999 9887641
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+..++||+|++..+++|+ .++..+++++.++|||||++++...+.
T Consensus 108 -----~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 108 -----HLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred -----hcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 245789999999999999 457899999999999999988776553
No 15
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=1e-18 Score=157.01 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=113.6
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEecCccccCcCCccccCCCc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-----DTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-----~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
|.+|||+|||+|-++..+|+ .|+.|+|+|+++.+++.|+++....... .++++... +.+... ++
T Consensus 90 g~~ilDvGCGgGLLSepLAr-lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~-~~E~~~---------~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLAR-LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDT-DVEGLT---------GK 158 (282)
T ss_pred CceEEEeccCccccchhhHh-hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhc-chhhcc---------cc
Confidence 47899999999999999999 5999999999999999999985433222 23666666 776665 67
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCCC----CCCHHHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSGC----LPSLRRVTSA 332 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg~----lp~~~~~~~~ 332 (381)
||+|+|.+++||+ +++..+++.+.++|||||.+++++-+.....+.. ..+.+.+.+-+|.+ ++++.++...
T Consensus 159 fDaVvcsevleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSI 236 (282)
T ss_pred cceeeeHHHHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHH
Confidence 9999999999999 7899999999999999999999987765444322 23444553333443 5778888555
Q ss_pred HHhcCCcEEEEEEe
Q 047022 333 MTSSSRLCVEHLEN 346 (381)
Q Consensus 333 l~~~~Gf~v~~~~~ 346 (381)
+. +.++.+.++..
T Consensus 237 l~-~~~~~v~~v~G 249 (282)
T KOG1270|consen 237 LN-ANGAQVNDVVG 249 (282)
T ss_pred HH-hcCcchhhhhc
Confidence 55 46888766544
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=2e-17 Score=154.09 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
+.+....+++.+...++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|+++ ++++..+ |+.++
T Consensus 14 ~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~-d~~~~ 84 (255)
T PRK14103 14 RGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTG-DVRDW 84 (255)
T ss_pred hhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEc-ChhhC
Confidence 3445567888888888999999999999999999887 578999999999999998763 4788999 98876
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-------chhhhhh---hc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-------GPGFIKE---YI 317 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-------~~~~i~~---yi 317 (381)
+ ..++||+|+++.+++|++ ++..+++++.++|||||.+++..+......... ...|... ..
T Consensus 85 ~-------~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 155 (255)
T PRK14103 85 K-------PKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIP 155 (255)
T ss_pred C-------CCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccc
Confidence 5 347899999999999995 579999999999999999988765431111000 0112111 00
Q ss_pred c-CCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 318 F-PSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 318 ~-pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
+ .+..+.+..++.+.+. ++||.+..
T Consensus 156 ~~~~~~~~~~~~~~~~l~-~aGf~v~~ 181 (255)
T PRK14103 156 FRVGAVVQTPAGYAELLT-DAGCKVDA 181 (255)
T ss_pred cccCcCCCCHHHHHHHHH-hCCCeEEE
Confidence 1 1234567777755554 69997644
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=8e-18 Score=136.29 Aligned_cols=107 Identities=26% Similarity=0.410 Sum_probs=92.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~~~fD 261 (381)
|+.+|||||||+|.++..+++. ++++|+|+|+|+++++.|+++....+..++++++.+ |+ .... ..++||
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-d~~~~~~-------~~~~~D 72 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQG-DAEFDPD-------FLEPFD 72 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-CCHGGTT-------TSSCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-ccccCcc-------cCCCCC
Confidence 6789999999999999999994 799999999999999999999977888889999999 99 3333 346799
Q ss_pred EEEEch-hhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICG-MIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~-~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|++.. +++++.. ++...+++++.+.|+|||+++++.
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999 4443432 467899999999999999999875
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.76 E-value=1.3e-17 Score=148.88 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=121.3
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVR 204 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~ 204 (381)
..-.++|+..||..||. ..+...+ -.-+..+.++...++.++||++||+|-.+..+.+
T Consensus 63 ~~vF~~vA~~YD~mND~-mSlGiHR---------------------lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~ 120 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDA-MSLGIHR---------------------LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILR 120 (296)
T ss_pred HHHHHHHHHHHHHHHHH-hhcchhH---------------------HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHH
Confidence 34556889999999999 6665432 1224678889989999999999999999999988
Q ss_pred h-cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC--eEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh
Q 047022 205 Q-TG------CKYTGITLSELQLKYAEIKVKEAGLQDT--SDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD 275 (381)
Q Consensus 205 ~-~~------~~v~gvDis~~~~~~a~~~~~~~gl~~~--i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~ 275 (381)
+ .. .+|+++|+|++|++.++++..+.++.+. +.++.+ |++++| |++++||+.++.+.+..++
T Consensus 121 ~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~-dAE~Lp------Fdd~s~D~yTiafGIRN~t-- 191 (296)
T KOG1540|consen 121 HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG-DAEDLP------FDDDSFDAYTIAFGIRNVT-- 191 (296)
T ss_pred hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC-CcccCC------CCCCcceeEEEecceecCC--
Confidence 7 22 6899999999999999999988888665 899999 999999 8899999999999999994
Q ss_pred cHHHHHHHHHhccccCceEEEE
Q 047022 276 YMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 276 ~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++++.+++++|+|||||++.+-
T Consensus 192 h~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 192 HIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CHHHHHHHHHHhcCCCcEEEEE
Confidence 5899999999999999996653
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.75 E-value=1.3e-16 Score=151.56 Aligned_cols=181 Identities=16% Similarity=0.090 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 166 EVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 166 ~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
+-+..-+...++..+...++.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+... ++.
T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-~ie 181 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-GIE 181 (314)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-CHH
Confidence 3334455667888888788999999999999999998876334799999999998765443222222347888888 988
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC--CC-CCCCCchhhhhhhccCCCC
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ--CY-DEHSLGPGFIKEYIFPSGC 322 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~--~~-~~~~~~~~~i~~yi~pgg~ 322 (381)
+++ ...+||+|+|+++++|+ .++..++++++++|||||.+++++..- .. ...... ....+. .-...
T Consensus 182 ~lp-------~~~~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-~ry~k~-~nv~f 250 (314)
T TIGR00452 182 QLH-------ELYAFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-DRYAKM-KNVYF 250 (314)
T ss_pred HCC-------CCCCcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-HHHHhc-ccccc
Confidence 887 23589999999999999 568999999999999999988764211 11 111111 111111 00124
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchh--HHHHHHHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETH--YYQKLRRWR 359 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~--y~~tl~~W~ 359 (381)
+|+..++...+. ++||+.+.+.+.... .......|.
T Consensus 251 lpS~~~L~~~L~-~aGF~~V~i~~~~~tt~~eqr~t~w~ 288 (314)
T TIGR00452 251 IPSVSALKNWLE-KVGFENFRILDVLKTTPEEQRKTDWI 288 (314)
T ss_pred CCCHHHHHHHHH-HCCCeEEEEEeccCCCHHHhhhhhhh
Confidence 688888866555 599999887765432 233345554
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=8.2e-17 Score=154.38 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=120.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.-+.+.+...+...++.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++++..+ |+++++
T Consensus 108 ~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-d~e~lp- 185 (322)
T PRK15068 108 DWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-GIEQLP- 185 (322)
T ss_pred HhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-CHHHCC-
Confidence 344566777777667899999999999999999986334799999999998765544333333457999999 999887
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC---CCCCCCCCchhhhhhhc-cCC-CCCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD---QCYDEHSLGPGFIKEYI-FPS-GCLP 324 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~---~~~~~~~~~~~~i~~yi-~pg-g~lp 324 (381)
+ .++||+|+|.++++|+ .++..++++++++|+|||.++++... ......... ..|. .++ -.+|
T Consensus 186 -----~-~~~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~----~~y~~~~~~~~lp 253 (322)
T PRK15068 186 -----A-LKAFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG----DRYAKMRNVYFIP 253 (322)
T ss_pred -----C-cCCcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch----hHHhcCccceeCC
Confidence 3 5889999999999998 56899999999999999998876321 111001111 1111 121 1368
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecch
Q 047022 325 SLRRVTSAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~~~~~ 349 (381)
+..++...+. ++||+.+.+.+...
T Consensus 254 s~~~l~~~L~-~aGF~~i~~~~~~~ 277 (322)
T PRK15068 254 SVPALKNWLE-RAGFKDVRIVDVSV 277 (322)
T ss_pred CHHHHHHHHH-HcCCceEEEEeCCC
Confidence 8888866665 59999988877654
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=4.5e-17 Score=151.85 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
.|......++..+.+.++.+|||||||+|.++..+++. ++++|+|+|+|+.|++.|+++. .++++..+ |+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~-d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEA-DIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEEC-chhc
Confidence 34555668888888889999999999999999999987 5689999999999999998874 36889999 9877
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCC-------CCchhhhhhhccC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEH-------SLGPGFIKEYIFP 319 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~-------~~~~~~i~~yi~p 319 (381)
+. ..++||+|+++.+++|++ +...+++++.++|||||.++++.+....... .....|...+..+
T Consensus 88 ~~-------~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 158 (258)
T PRK01683 88 WQ-------PPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDR 158 (258)
T ss_pred cC-------CCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccc
Confidence 65 346899999999999994 5789999999999999999888765321111 0112344444333
Q ss_pred C---CCCCCHHHHHHHHHhcCCcEEE
Q 047022 320 S---GCLPSLRRVTSAMTSSSRLCVE 342 (381)
Q Consensus 320 g---g~lp~~~~~~~~l~~~~Gf~v~ 342 (381)
+ ..+|+..++.+.+.+ +|+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~-~g~~v~ 183 (258)
T PRK01683 159 GARRAPLPPPHAYYDALAP-AACRVD 183 (258)
T ss_pred cccCcCCCCHHHHHHHHHh-CCCcee
Confidence 3 356777777666665 677653
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.74 E-value=9.2e-17 Score=143.75 Aligned_cols=112 Identities=19% Similarity=0.282 Sum_probs=97.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++. ++++... |+.+.+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~-d~~~~~------ 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVV-DLNNLT------ 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEec-ChhhCC------
Confidence 4556666667789999999999999999986 889999999999999999999888874 6889999 987765
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..++||+|+++.+++|+++.+...+++++.++|||||++++
T Consensus 92 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 -FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 24679999999999998877889999999999999999543
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=7.7e-17 Score=149.70 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
|+...+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.++++.. .+.+..+ |+..++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~-d~~~~~ 98 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAG-DIESLP 98 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEc-CcccCc
Confidence 5566667788887667789999999999999998874 8899999999999999988742 3567888 998876
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccC-CCCCCCH
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFP-SGCLPSL 326 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~p-gg~lp~~ 326 (381)
+.+++||+|+++.+++++ .++..++.++.++|||||.++++.+.... .... ..|..-...+ ....++.
T Consensus 99 ------~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~--~~~~~~~~~~~~~~~~~~ 168 (251)
T PRK10258 99 ------LATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSLPELH--QAWQAVDERPHANRFLPP 168 (251)
T ss_pred ------CCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHH--HHHHHhccCCccccCCCH
Confidence 456789999999999988 46899999999999999998888755331 1111 0111000111 2345677
Q ss_pred HHHHHHHHhcCCcEEEEEEecchh
Q 047022 327 RRVTSAMTSSSRLCVEHLENIETH 350 (381)
Q Consensus 327 ~~~~~~l~~~~Gf~v~~~~~~~~~ 350 (381)
.++...+. ..++.. +.+.+..+
T Consensus 169 ~~l~~~l~-~~~~~~-~~~~~~~~ 190 (251)
T PRK10258 169 DAIEQALN-GWRYQH-HIQPITLW 190 (251)
T ss_pred HHHHHHHH-hCCcee-eeeEEEEE
Confidence 77765554 467764 34444333
No 24
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=1.5e-16 Score=152.32 Aligned_cols=158 Identities=18% Similarity=0.138 Sum_probs=118.8
Q ss_pred HHHHHcCC-CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+++.+.+ .++.+|||||||+|.++..+++. .+.+|+++|+|++|++.|+++... .++++..+ |..+++
T Consensus 103 ~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~g-D~e~lp---- 173 (340)
T PLN02490 103 DALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEG-DAEDLP---- 173 (340)
T ss_pred HHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEec-cHHhCC----
Confidence 45555554 46789999999999999998876 457999999999999999987542 36889999 998877
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC-CCCCCCHHHHHH
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP-SGCLPSLRRVTS 331 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p-gg~lp~~~~~~~ 331 (381)
+.+++||+|++..+++|++ +....++++.++|||||++++..+... ..+..++... ....++.+++.+
T Consensus 174 --~~~~sFDvVIs~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p-------~~~~~r~~~~~~~~~~t~eEl~~ 242 (340)
T PLN02490 174 --FPTDYADRYVSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHP-------TFWLSRFFADVWMLFPKEEEYIE 242 (340)
T ss_pred --CCCCceeEEEEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCc-------chhHHHHhhhhhccCCCHHHHHH
Confidence 4568899999999999985 568899999999999999877543221 1122221111 112467888866
Q ss_pred HHHhcCCcEEEEEEecchhHHH
Q 047022 332 AMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
.+. ++||+.+.+++++.++.+
T Consensus 243 lL~-~aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 243 WFT-KAGFKDVKLKRIGPKWYR 263 (340)
T ss_pred HHH-HCCCeEEEEEEcChhhcc
Confidence 665 589999999888776543
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.70 E-value=6.6e-16 Score=137.99 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=108.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.+...++.+|||+|||+|.++..++++ +.+|+++|+|+.+++.++++....++. +.+... |....+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~-d~~~~~------ 90 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAY-DINAAA------ 90 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEec-cchhcc------
Confidence 3445555556679999999999999999985 889999999999999999988877764 777777 776544
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE-EcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHH
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS-TVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAM 333 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i-~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l 333 (381)
..++||+|+++.+++|++..+...+++++.++|||||++++ ...... .... . .|.....+..++.+.+
T Consensus 91 -~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~--~~~~-~-------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 91 -LNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTA--DYPC-H-------MPFSFTFKEDELRQYY 159 (195)
T ss_pred -ccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccC--CCCC-C-------CCcCccCCHHHHHHHh
Confidence 23679999999999999777788999999999999999544 322111 0000 0 1222345677775443
Q ss_pred HhcCCcEEEEEE
Q 047022 334 TSSSRLCVEHLE 345 (381)
Q Consensus 334 ~~~~Gf~v~~~~ 345 (381)
.+|+++...
T Consensus 160 ---~~~~~~~~~ 168 (195)
T TIGR00477 160 ---ADWELLKYN 168 (195)
T ss_pred ---CCCeEEEee
Confidence 258877665
No 26
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.70 E-value=2.4e-16 Score=144.22 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=115.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++....+..+++++..+ |+... .++||
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~---------~~~fD 129 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVG-DLESL---------LGRFD 129 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc-Cchhc---------cCCcC
Confidence 457889999999999999999985 77899999999999999999988777668999999 85332 37899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC------CCCCCCHHHHHHHHHh
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP------SGCLPSLRRVTSAMTS 335 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p------gg~lp~~~~~~~~l~~ 335 (381)
+|++..+++|++++....+++.+.+.+++++.+. ..+.... ......+.+ .+| .....+..++.+.+.
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~-~~~~~~~---~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~- 203 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT-FAPYTPL---LALLHWIGG-LFPGPSRTTRIYPHREKGIRRALA- 203 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE-ECCccHH---HHHHHHhcc-ccCCccCCCCccccCHHHHHHHHH-
Confidence 9999999999887778889999998775444332 2221110 001111111 112 123345666655544
Q ss_pred cCCcEEEEEEec-chhHHHHHHHHHH
Q 047022 336 SSRLCVEHLENI-ETHYYQKLRRWRQ 360 (381)
Q Consensus 336 ~~Gf~v~~~~~~-~~~y~~tl~~W~~ 360 (381)
++||++.....+ ..+|..++.+|.+
T Consensus 204 ~~Gf~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 204 AAGFKVVRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred HCCCceEeeeeccchhHHHHHHHHhh
Confidence 589999887765 3466777777754
No 27
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.70 E-value=3.9e-16 Score=142.03 Aligned_cols=166 Identities=20% Similarity=0.309 Sum_probs=120.9
Q ss_pred HHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.....+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++....+..+++++..+ |+.+++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN-DLLSLC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC-ChhhCC
Confidence 33345555555 567889999999999999999885 78999999999999999999987776668999999 987765
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCC------CC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPS------GC 322 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pg------g~ 322 (381)
++||+|++..+++|++..+...+++++.+++++++.+.+. +.... .....++... +|+ ..
T Consensus 118 ---------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~-~~~~~---~~~~~~~~~~-~~~~~~~~~~~ 183 (219)
T TIGR02021 118 ---------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA-PKTAW---LAFLKMIGEL-FPGSSRATSAY 183 (219)
T ss_pred ---------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC-CCchH---HHHHHHHHhh-CcCcccccceE
Confidence 7899999999999998777889999999999876555443 21111 1111122222 222 23
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchhHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETHYYQ 353 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~ 353 (381)
.++..++.+.+ +.+||+++..+.....+..
T Consensus 184 ~~~~~~~~~~l-~~~Gf~v~~~~~~~~~~~~ 213 (219)
T TIGR02021 184 LHPMTDLERAL-GELGWKIVREGLVSTGFYN 213 (219)
T ss_pred EecHHHHHHHH-HHcCceeeeeecccccchh
Confidence 45677775554 4689999988766554433
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.70 E-value=8e-17 Score=125.78 Aligned_cols=95 Identities=24% Similarity=0.344 Sum_probs=82.9
Q ss_pred EEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchh
Q 047022 189 LEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGM 268 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~ 268 (381)
||+|||+|..+..++++.+.+|+++|+|+++++.++++.... ++.+..+ |..+++ +++++||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~-d~~~l~------~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQG-DAEDLP------FPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEES-BTTSSS------S-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----Cchheee-hHHhCc------cccccccccccccc
Confidence 899999999999999976889999999999999999987543 4669999 999998 77899999999999
Q ss_pred hHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 269 IEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 269 l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
++|+ +++..+++++.|+|||||+++|
T Consensus 70 ~~~~--~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHL--EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGS--SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeec--cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999 6799999999999999999875
No 29
>PRK05785 hypothetical protein; Provisional
Probab=99.69 E-value=4e-16 Score=142.52 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=97.2
Q ss_pred hHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHH-HHHHHHHcCCCCCCEEEEecCCchHHHHHHH
Q 047022 125 TQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRK-VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIV 203 (381)
Q Consensus 125 ~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~-~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la 203 (381)
....+.++..||..|.+ .+...+. ..++. +..+.... .++.+|||+|||+|.++..++
T Consensus 12 ~~~f~~iA~~YD~~n~~-~s~g~~~------------------~wr~~~~~~l~~~~--~~~~~VLDlGcGtG~~~~~l~ 70 (226)
T PRK05785 12 QEAYNKIPKAYDRANRF-ISFNQDV------------------RWRAELVKTILKYC--GRPKKVLDVAAGKGELSYHFK 70 (226)
T ss_pred HHHHHhhhHHHHHhhhh-ccCCCcH------------------HHHHHHHHHHHHhc--CCCCeEEEEcCCCCHHHHHHH
Confidence 34566788888887776 4433221 11222 22222222 346799999999999999998
Q ss_pred HhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHH
Q 047022 204 RQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSC 283 (381)
Q Consensus 204 ~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~ 283 (381)
+..+.+|+|+|+|++|++.|+++ ..+.++ |+.+++ +++++||+|++..+++|+ .+++.++++
T Consensus 71 ~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~-d~~~lp------~~d~sfD~v~~~~~l~~~--~d~~~~l~e 132 (226)
T PRK05785 71 KVFKYYVVALDYAENMLKMNLVA---------DDKVVG-SFEALP------FRDKSFDVVMSSFALHAS--DNIEKVIAE 132 (226)
T ss_pred HhcCCEEEEECCCHHHHHHHHhc---------cceEEe-chhhCC------CCCCCEEEEEecChhhcc--CCHHHHHHH
Confidence 86567999999999999998764 235678 998887 678999999999999998 568999999
Q ss_pred HHhccccCc
Q 047022 284 CESLLAENG 292 (381)
Q Consensus 284 ~~~~LkpgG 292 (381)
+.|+|||.+
T Consensus 133 ~~RvLkp~~ 141 (226)
T PRK05785 133 FTRVSRKQV 141 (226)
T ss_pred HHHHhcCce
Confidence 999999953
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=7.5e-16 Score=142.75 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=95.5
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+.++.+|||||||+|..+..+++. ++++++|+|+|+.|++.|++++...+...++++..+ |+.+++ + .
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~-d~~~~~------~--~ 124 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG-DIRDIA------I--E 124 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeC-ChhhCC------C--C
Confidence 457889999999999999888873 578999999999999999999988887778999999 988776 1 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+|+|+++.+++|+++.+...+++++.++|||||.++++.
T Consensus 125 ~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 125 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5999999999999987677899999999999999988764
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=1.4e-15 Score=142.91 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=112.7
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 180 VKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..++++.+|||||||+|..+..+++.. ..+|+++|+|+++++.|+++....++. ++++..+ |+.+++ +++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~-d~~~l~------~~~ 144 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLG-EIEALP------VAD 144 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEc-chhhCC------CCC
Confidence 456789999999999999888777653 358999999999999999998887774 8999999 998877 456
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcC
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
++||+|++..+++|++ +...+++++.++|||||+++++...............+.-+..-.+...+..++.+.+. ++
T Consensus 145 ~~fD~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~a 221 (272)
T PRK11873 145 NSVDVIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLA-EA 221 (272)
T ss_pred CceeEEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHH-HC
Confidence 7999999999999884 57889999999999999988754221111000000001111111122346677766555 58
Q ss_pred CcEEEEEEe
Q 047022 338 RLCVEHLEN 346 (381)
Q Consensus 338 Gf~v~~~~~ 346 (381)
||..+.+..
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999876644
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.68 E-value=2.6e-15 Score=137.54 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=99.3
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++.+.+.++.+|||+|||+|.++..+++.. +++++++|+|+.+++.++++.. ....++++... |....+
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~-d~~~~~--- 82 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRG-DADGLP--- 82 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEec-ccccCC---
Confidence 467788888999999999999999999998873 5799999999999999998833 23357999999 987766
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+..++||+|++..+++|+ .++..+++++.++|||||.+++..+.
T Consensus 83 ---~~~~~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 83 ---FPDGSFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ---CCCCCceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 456889999999999999 46899999999999999998887654
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=4.6e-16 Score=133.38 Aligned_cols=109 Identities=26% Similarity=0.485 Sum_probs=94.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+.+.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++++..++. +++|.++ |+.+++.. +. ++|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~-d~~~l~~~----~~-~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQG-DIEDLPQE----LE-EKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEES-BTTCGCGC----SS-TTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEe-ehhccccc----cC-CCe
Confidence 46789999999999999999953 5789999999999999999999999887 8999999 99986611 12 789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|++..+++|+ .++..+++++.++|+|||.+++..+.
T Consensus 75 D~I~~~~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 45789999999999999998887654
No 34
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.67 E-value=1.3e-16 Score=137.23 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
..++.+|||||||.|.++..+++. +.+++|+|+|+.+++. .++..... +..... .+.++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~-~~~~~~------~~~~~fD 80 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNF-DAQDPP------FPDGSFD 80 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEE-ECHTHH------CHSSSEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhh-hhhhhh------ccccchh
Confidence 568889999999999999999775 7899999999999887 12333333 222222 2458999
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC---CCCCCCHHHHHHHHHhcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP---SGCLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p---gg~lp~~~~~~~~l~~~~G 338 (381)
+|+|+.+++|++ ++..+++++.++|||||+++++++............+ .+..+ .....+..++... .+++|
T Consensus 81 ~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l-l~~~G 155 (161)
T PF13489_consen 81 LIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW--RYDRPYGGHVHFFSPDELRQL-LEQAG 155 (161)
T ss_dssp EEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC--CGTCHHTTTTEEBBHHHHHHH-HHHTT
T ss_pred hHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc--CCcCccCceeccCCHHHHHHH-HHHCC
Confidence 999999999995 6999999999999999999999876532100000001 11111 1234567777544 55699
Q ss_pred cEEEE
Q 047022 339 LCVEH 343 (381)
Q Consensus 339 f~v~~ 343 (381)
|++++
T Consensus 156 ~~iv~ 160 (161)
T PF13489_consen 156 FEIVE 160 (161)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99875
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=1.3e-15 Score=140.43 Aligned_cols=108 Identities=15% Similarity=0.184 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.++.+|||+|||+|..+..+++. ++++++|+|+|++|++.|++++...+...++++..+ |+.+++ + ..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~-d~~~~~------~--~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN-DIRHVE------I--KN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-ChhhCC------C--CC
Confidence 57789999999999999999875 478999999999999999999887766668999999 998876 2 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|+|++..+++|+++++...+++++.++|||||.++++.+
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 8999999999999877788999999999999999888754
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=1.8e-15 Score=138.91 Aligned_cols=117 Identities=21% Similarity=0.288 Sum_probs=99.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...++..+...++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...++..++++..+ |..+.+
T Consensus 40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~-- 116 (239)
T PRK00216 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-DAEALP-- 116 (239)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-ccccCC--
Confidence 3456667777788999999999999999998874 38999999999999999999877666667999999 988765
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+..++||+|++..+++++ .++..+++++.++|+|||.+++..
T Consensus 117 ----~~~~~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 117 ----FPDNSFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ----CCCCCccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEE
Confidence 345789999999999988 458999999999999999976643
No 37
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=1.6e-15 Score=137.80 Aligned_cols=138 Identities=24% Similarity=0.286 Sum_probs=109.2
Q ss_pred HHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc
Q 047022 127 ARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT 206 (381)
Q Consensus 127 ~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~ 206 (381)
....++.+||..+.. +..+. +......+++.+...++.+|||+|||+|..+..+++..
T Consensus 4 ~~~~~~~~y~~~~~~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~ 61 (223)
T TIGR01934 4 MFDRIAPKYDLLNDL-LSFGL---------------------HRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSA 61 (223)
T ss_pred HHHHHHhhhhHHHHH-Hhccc---------------------HHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhc
Confidence 356788888887666 43222 12333456666666688999999999999999998874
Q ss_pred C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHH
Q 047022 207 G--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCC 284 (381)
Q Consensus 207 ~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~ 284 (381)
+ .+++++|+++.+++.++++.. ...++++..+ |+.+.+ +..++||+|++..+++|+ .++..+++++
T Consensus 62 ~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~-d~~~~~------~~~~~~D~i~~~~~~~~~--~~~~~~l~~~ 129 (223)
T TIGR01934 62 PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQA-DAEALP------FEDNSFDAVTIAFGLRNV--TDIQKALREM 129 (223)
T ss_pred CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEec-chhcCC------CCCCcEEEEEEeeeeCCc--ccHHHHHHHH
Confidence 4 599999999999999998875 3357899999 998876 345789999999999988 4688999999
Q ss_pred HhccccCceEEEEc
Q 047022 285 ESLLAENGLSCSTV 298 (381)
Q Consensus 285 ~~~LkpgG~~~i~~ 298 (381)
.+.|+|||++++..
T Consensus 130 ~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 130 YRVLKPGGRLVILE 143 (223)
T ss_pred HHHcCCCcEEEEEE
Confidence 99999999977654
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=4.1e-15 Score=140.79 Aligned_cols=139 Identities=10% Similarity=0.145 Sum_probs=106.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
++.+|||+|||+|..+.++++. |.+|+|+|+|+.+++.+++++...++ ++++... |..... ..++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~-D~~~~~-------~~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLY-DINSAS-------IQEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEe-chhccc-------ccCCccEE
Confidence 4459999999999999999985 89999999999999999999988877 5888888 887654 24789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
++..+++|++.++...+++++.++|+|||++++........ ... -.|.....+..++.+.+ .+|++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~-~~~--------~~p~~~~~~~~el~~~~---~~~~i~~ 256 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTED-YPC--------PMPFSFTFKEGELKDYY---QDWEIVK 256 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc-CCC--------CCCCCcccCHHHHHHHh---CCCEEEE
Confidence 99999999987788999999999999999965543221110 000 01222345566774443 3698887
Q ss_pred EE
Q 047022 344 LE 345 (381)
Q Consensus 344 ~~ 345 (381)
.+
T Consensus 257 ~~ 258 (287)
T PRK12335 257 YN 258 (287)
T ss_pred Ee
Confidence 74
No 39
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.65 E-value=4.9e-15 Score=141.66 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=117.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.++++.+|||||||+|.+++.++++ ++.+++++|+ +.+++.+++++...++.+++++..+ |+.+.+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~-d~~~~~--- 212 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAV-DIYKES--- 212 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEec-CccCCC---
Confidence 345677778888899999999999999999988 6789999998 7899999999999999889999999 987644
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCC------CCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGC------LPS 325 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~------lp~ 325 (381)
+ ..+|+|+...++++++++....+++++.+.|+|||++++......... .....+...++.+.+. .+.
T Consensus 213 ---~--~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T TIGR02716 213 ---Y--PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKE 286 (306)
T ss_pred ---C--CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCC
Confidence 2 247999999999998776678899999999999999877632111111 1112233333333221 233
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 047022 326 LRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~ 343 (381)
..++. .+.+++||+.+.
T Consensus 287 ~~e~~-~ll~~aGf~~v~ 303 (306)
T TIGR02716 287 QARYK-EILESLGYKDVT 303 (306)
T ss_pred HHHHH-HHHHHcCCCeeE
Confidence 45664 445568998654
No 40
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.64 E-value=9.2e-15 Score=139.19 Aligned_cols=147 Identities=26% Similarity=0.294 Sum_probs=102.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL----QDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl----~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.++++....+. ..++++... |+.+++ ++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~-Dl~~l~---------~~ 212 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN-DLESLS---------GK 212 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc-chhhcC---------CC
Confidence 5789999999999999999985 88999999999999999999876522 235788888 876554 78
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCC------CCCCHHHHHHHH
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSG------CLPSLRRVTSAM 333 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg------~lp~~~~~~~~l 333 (381)
||+|+|..+++|++++....+++.+.+ +.+||.++...+.... ......+.. .+|+. ++.+.+++.+.+
T Consensus 213 fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~---~~~l~~~g~-~~~g~~~~~r~y~~s~eel~~lL 287 (315)
T PLN02585 213 YDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLY---YDILKRIGE-LFPGPSKATRAYLHAEADVERAL 287 (315)
T ss_pred cCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchH---HHHHHHHHh-hcCCCCcCceeeeCCHHHHHHHH
Confidence 999999999999987666677777775 4555554433332110 000111111 23432 344677775554
Q ss_pred HhcCCcEEEEEEec
Q 047022 334 TSSSRLCVEHLENI 347 (381)
Q Consensus 334 ~~~~Gf~v~~~~~~ 347 (381)
+++||++...+..
T Consensus 288 -~~AGf~v~~~~~~ 300 (315)
T PLN02585 288 -KKAGWKVARREMT 300 (315)
T ss_pred -HHCCCEEEEEEEe
Confidence 4599999865543
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.64 E-value=8.4e-15 Score=128.98 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=92.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+++.++.-++.++||+|||.|..+.++|++ |..|+++|+|+..++.+++.+...+++ |+.... |+.+..
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~-Dl~~~~------ 90 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVA-DLNDFD------ 90 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE--BGCCBS------
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEe-cchhcc------
Confidence 4555566556779999999999999999996 999999999999999999998888876 999999 987766
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.||+|+|..++.|+..+..+.+++.+.+.++|||++++.
T Consensus 91 -~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 91 -FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp --TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred -ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 347899999999999999888999999999999999996663
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=2.1e-14 Score=127.04 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=89.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++.+|||+|||+|..++.+++. ++++|+++|+|+.+++.|+++....++. ++++..+ |+.+++ ..++|
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~-d~~~~~-------~~~~f 113 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHG-RAEEFG-------QEEKF 113 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEec-cHhhCC-------CCCCc
Confidence 345889999999999999998875 6789999999999999999999999986 5999999 998876 25789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|++.. + .+++.+++.+.++|||||++++..+
T Consensus 114 DlV~~~~----~--~~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 114 DVVTSRA----V--ASLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred cEEEEcc----c--cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 9999974 2 3568899999999999999877643
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.63 E-value=9.2e-15 Score=134.16 Aligned_cols=177 Identities=24% Similarity=0.380 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..+..+...+...++.+|||||||+|.++..+++. +++++++|+++.+++.+++++...+. ++++... +..+.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~-~~~~~~~- 109 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQT-TAEELAA- 109 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEec-CHHHhhh-
Confidence 33445555555667899999999999999999885 88999999999999999998876654 4788888 8776641
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccC-----CCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFP-----SGC 322 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~p-----gg~ 322 (381)
...++||+|++..+++|++ +...+++.+.+.|+|||.++++.+......... ...++... .+ ...
T Consensus 110 ----~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 182 (233)
T PRK05134 110 ----EHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRM-LPKGTHDYKK 182 (233)
T ss_pred ----hcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhh-cCcccCchhh
Confidence 2347899999999999994 578999999999999999888876432111000 00011111 11 123
Q ss_pred CCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHHHHHH
Q 047022 323 LPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362 (381)
Q Consensus 323 lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f 362 (381)
.++..++.+.+. ++||+++... +.+|.+....|+.+.
T Consensus 183 ~~~~~~~~~~l~-~~Gf~~v~~~--~~~~~~~~~~~~~~~ 219 (233)
T PRK05134 183 FIKPSELAAWLR-QAGLEVQDIT--GLHYNPLTNRWKLSD 219 (233)
T ss_pred cCCHHHHHHHHH-HCCCeEeeee--eEEechhhcceeecc
Confidence 456667755554 5999998764 456888888887743
No 44
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.61 E-value=1.3e-15 Score=121.28 Aligned_cols=96 Identities=24% Similarity=0.453 Sum_probs=82.4
Q ss_pred EEEecCCchHHHHHHHHhc--C--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 188 VLEIGCGWGTLAIEIVRQT--G--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~--~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
|||+|||+|..+..+++.. + .+++++|+|+++++.++++....+. ++++.+. |+.+++ +..++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~-D~~~l~------~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQA-DARDLP------FSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEES-CTTCHH------HHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEEC-CHhHCc------ccCCCeeEE
Confidence 7999999999999999863 3 7999999999999999999987665 6999999 999887 355799999
Q ss_pred EEch-hhHhhChhcHHHHHHHHHhccccCc
Q 047022 264 FICG-MIEAVGHDYMEELFSCCESLLAENG 292 (381)
Q Consensus 264 vs~~-~l~~~~~~~~~~~l~~~~~~LkpgG 292 (381)
++.+ +++|+.+++...+++++.++|||||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9955 4999998899999999999999998
No 45
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.1e-14 Score=117.99 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
...+++.+.+.++.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.+++++...++. ++++... |+....+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~~~~-- 83 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEG-DAPEALE-- 83 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEec-cccccCh--
Confidence 345777788888899999999999999999987 4679999999999999999998887775 7888888 8764321
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||.|++.....+ ...+++.+.+.|||||.++++.
T Consensus 84 ---~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 ---DSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---hhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEe
Confidence 12368999999765443 4689999999999999988865
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.60 E-value=4.3e-14 Score=129.57 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCC---CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 169 QIRKVSVLIEKVKL---VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 169 q~~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++.. +++.+..+ |.
T Consensus 16 q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~-d~ 89 (240)
T TIGR02072 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICG-DA 89 (240)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEec-ch
Confidence 44444444444432 34579999999999999999887 45689999999999999988753 37889999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.+.+ +++++||+|++..+++|+ .++..+++++.++|+|||.++++.+..
T Consensus 90 ~~~~------~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 90 EKLP------LEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhCC------CCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 8876 456889999999999999 458899999999999999998887543
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=2.9e-14 Score=125.69 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=85.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.++..++.. ++++|+++|+|+++++.++++++..++. +++++.+ |+.++. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~-d~~~~~-------~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNG-RAEDFQ-------HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEec-chhhcc-------ccCCccE
Confidence 4789999999999999998865 4579999999999999999999888875 6999999 998865 3478999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++.. ++ ++..+++.+.++|+|||.+++..
T Consensus 113 I~s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 113 ITSRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred EEehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 99975 33 35778899999999999988764
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.57 E-value=9.7e-15 Score=127.60 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+-...++..+.+.+..+|.|+|||+|..+..++++ +++.++|+|-|++|++.|+++. .+++|..+ |+.+..
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a-Dl~~w~- 88 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA-DLRTWK- 88 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc-cHhhcC-
Confidence 33457788888888899999999999999999999 8999999999999999998874 37899999 999987
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-------CchhhhhhhccC---
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-------LGPGFIKEYIFP--- 319 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-------~~~~~i~~yi~p--- 319 (381)
+...+|+++++.+++++++ ...+|.++...|.|||.+.+..|++.-+... ....|-..+--+
T Consensus 89 ------p~~~~dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~ 160 (257)
T COG4106 89 ------PEQPTDLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLT 160 (257)
T ss_pred ------CCCccchhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccc
Confidence 4578999999999999964 6899999999999999999999886533221 112333332211
Q ss_pred CCCCCCHHHHHHHHHh
Q 047022 320 SGCLPSLRRVTSAMTS 335 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~ 335 (381)
+..+|++....+.+..
T Consensus 161 r~~v~s~a~Yy~lLa~ 176 (257)
T COG4106 161 RAPLPSPAAYYELLAP 176 (257)
T ss_pred cCCCCCHHHHHHHhCc
Confidence 3457888888777654
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=4.6e-14 Score=127.11 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
....+++.+.++++++|||||||+|..+..+++.. +.+|+++|+++++++.|++++...++..++++..+ |..+..+
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~-d~~~~~~ 138 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG-DGKRGLE 138 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC-CcccCCc
Confidence 35567788888899999999999999999988763 46999999999999999999998888767999999 9876541
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..++||+|++...+++++ +++.+.|+|||++++....
T Consensus 139 ------~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 139 ------KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ------cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEEcC
Confidence 346899999998888774 3577899999998876543
No 50
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.56 E-value=1.4e-13 Score=127.57 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=109.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
-|.+++...+..-.|.+|||||||.|.++..++.+....|+|+|.+.......+....-.|....+..... -+++++
T Consensus 102 ~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp-- 178 (315)
T PF08003_consen 102 WKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLP-- 178 (315)
T ss_pred chHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhcc--
Confidence 35567777775557899999999999999999987334699999998766554332222233323444434 566776
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC---CCCCCCCCCchhhhhhhc-cCC-CCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP---DQCYDEHSLGPGFIKEYI-FPS-GCLPS 325 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~---~~~~~~~~~~~~~i~~yi-~pg-g~lp~ 325 (381)
..+.||.|+|.+++.|. .++-..+++++..|+|||.+++.+- .......... .+|- .++ -.+|+
T Consensus 179 -----~~~~FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~----~rYa~m~nv~FiPs 247 (315)
T PF08003_consen 179 -----NLGAFDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE----DRYAKMRNVWFIPS 247 (315)
T ss_pred -----ccCCcCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC----CcccCCCceEEeCC
Confidence 25889999999999999 6799999999999999999775431 1110000000 0110 011 14789
Q ss_pred HHHHHHHHHhcCCcEEEEEEecc
Q 047022 326 LRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 326 ~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
...+...+ +++||+-+.+-+..
T Consensus 248 ~~~L~~wl-~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 248 VAALKNWL-ERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHH-HHcCCceEEEecCc
Confidence 98885554 46999887765543
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.56 E-value=2.7e-13 Score=122.51 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEEe
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--------------QDTSDYIFV 241 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--------------~~~i~~~~~ 241 (381)
.+..+.+.++.+|||+|||.|..+..+|++ |..|+|+|+|+..++.+.+.. ++ ..++++.++
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEc
Confidence 344444457789999999999999999996 999999999999999764321 21 236899999
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+.+++++ ..++||.|+...+++|++++....+++.+.++|||||++++
T Consensus 102 -D~~~~~~~-----~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 102 -DFFALTAA-----DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -cCCCCCcc-----cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99887621 23679999999999999988889999999999999998443
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.55 E-value=6.9e-14 Score=125.67 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC
Q 047022 165 LEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243 (381)
Q Consensus 165 l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d 243 (381)
+..+....+..++..+ .++.+|||+|||+|.++..+++. ++.+++|+|+|+++++.|+++. .++.+..+ |
T Consensus 26 ~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~-d 96 (204)
T TIGR03587 26 LVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG-S 96 (204)
T ss_pred HHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe-e
Confidence 3333344444555544 46789999999999999999886 5789999999999999998764 25778888 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.+ + +.+++||+|++.++++|+++++...+++++.+++ ++.++|+.
T Consensus 97 ~~~-~------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 97 LFD-P------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred ccC-C------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 776 4 4568999999999999998778899999999997 45666554
No 53
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=7.1e-14 Score=121.65 Aligned_cols=156 Identities=14% Similarity=0.163 Sum_probs=117.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.|.+. ++||.+|||+|||.|.+..++.+..++...|+|++++.+..+.++ | +.++++ |+.+- |..
T Consensus 6 ~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~-Dld~g----L~~ 70 (193)
T PF07021_consen 6 IIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQG-DLDEG----LAD 70 (193)
T ss_pred HHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEEC-CHHHh----Hhh
Confidence 44554 458999999999999999999887899999999999988877765 3 668899 88653 235
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC---------Cchhh--hhhhccCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS---------LGPGF--IKEYIFPSGCL 323 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~---------~~~~~--i~~yi~pgg~l 323 (381)
+++++||.||.+.+++++ .++..+++++.|+ |...+++.|+..+-..+ +..+. ..-|-.|+-++
T Consensus 71 f~d~sFD~VIlsqtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~ 145 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHL 145 (193)
T ss_pred CCCCCccEEehHhHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCccc
Confidence 789999999999999999 6789998888665 66788999885432110 00000 12244577788
Q ss_pred CCHHHHHHHHHhcCCcEEEEEEecchhH
Q 047022 324 PSLRRVTSAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 324 p~~~~~~~~l~~~~Gf~v~~~~~~~~~y 351 (381)
.++.++ +.+.++.|+.+++..-+..+.
T Consensus 146 ~Ti~DF-e~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 146 CTIKDF-EDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred ccHHHH-HHHHHHCCCEEEEEEEEcCCC
Confidence 889888 555556899998877665544
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.55 E-value=2.3e-13 Score=120.77 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=90.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+.+.++.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.+++++...++. ++++..+ |... .
T Consensus 22 ~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~-d~~~-~----- 93 (187)
T PRK08287 22 LALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPG-EAPI-E----- 93 (187)
T ss_pred HHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEec-Cchh-h-----
Confidence 4567777788999999999999999999886 4679999999999999999999887774 7999988 8742 2
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|++.....+ +..+++.+.++|+|||++++..
T Consensus 94 --~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 94 --LPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred --cCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEE
Confidence 2368999999765433 4678999999999999987753
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.54 E-value=2.5e-13 Score=123.72 Aligned_cols=154 Identities=24% Similarity=0.334 Sum_probs=111.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++++... |+.+.+.. ..++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~~~-----~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCT-SVEDLAEK-----GAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeC-CHHHhhcC-----CCCCccEE
Confidence 4789999999999999998885 778999999999999999988776653 5888888 88776511 23789999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC---chhhhhhhccCCC----CCCCHHHHHHHHHhc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL---GPGFIKEYIFPSG----CLPSLRRVTSAMTSS 336 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~---~~~~i~~yi~pgg----~lp~~~~~~~~l~~~ 336 (381)
++..+++|+ .++..+++.+.++|+|||.++++.++........ ...++.....++. ...+..++.+.+. +
T Consensus 117 ~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~ 193 (224)
T TIGR01983 117 TCMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLE-S 193 (224)
T ss_pred EehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHH-H
Confidence 999999999 4688999999999999999888776533211000 0011111111111 2345566655554 5
Q ss_pred CCcEEEEEEecc
Q 047022 337 SRLCVEHLENIE 348 (381)
Q Consensus 337 ~Gf~v~~~~~~~ 348 (381)
+||+++++....
T Consensus 194 ~G~~i~~~~~~~ 205 (224)
T TIGR01983 194 AGLRVKDVKGLV 205 (224)
T ss_pred cCCeeeeeeeEE
Confidence 899998877544
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=7.8e-14 Score=130.30 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchH----HHHHHHHh-c-----CCEEEEEcCCHHHHHHHHHHHH----H
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQ-T-----GCKYTGITLSELQLKYAEIKVK----E 229 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~-~-----~~~v~gvDis~~~~~~a~~~~~----~ 229 (381)
.++......+..+++.....++.+|+|+|||+|. +++.+++. . +.+|+|+|+|+.+++.|++.+- .
T Consensus 79 ~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~ 158 (264)
T smart00138 79 HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPEREL 158 (264)
T ss_pred HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHH
Confidence 3444434444444444444456899999999996 55556554 1 4689999999999999997531 0
Q ss_pred cC----------------------CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhc
Q 047022 230 AG----------------------LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESL 287 (381)
Q Consensus 230 ~g----------------------l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~ 287 (381)
.+ +..+|+|.+. |..+.+ .+.++||+|+|.+++.|+++++...++++++++
T Consensus 159 ~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~-dl~~~~------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~ 231 (264)
T smart00138 159 EDLPKALLARYFSRVEDKYRVKPELKERVRFAKH-NLLAES------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA 231 (264)
T ss_pred hcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeec-cCCCCC------CccCCCCEEEechhHHhCCHHHHHHHHHHHHHH
Confidence 11 2247899999 998876 245889999999999999877788999999999
Q ss_pred cccCceEEEEc
Q 047022 288 LAENGLSCSTV 298 (381)
Q Consensus 288 LkpgG~~~i~~ 298 (381)
|+|||++++..
T Consensus 232 L~pGG~L~lg~ 242 (264)
T smart00138 232 LKPGGYLFLGH 242 (264)
T ss_pred hCCCeEEEEEC
Confidence 99999998864
No 57
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.53 E-value=3.7e-13 Score=120.51 Aligned_cols=113 Identities=20% Similarity=0.340 Sum_probs=93.4
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+.++.+.++.+|||+|||+|.+++.+++. .+.+|+++|+++.+++.+++++...++.+++++..+ |..+..+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-d~~~~l~--- 106 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-EAPEILF--- 106 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-chhhhHh---
Confidence 4467888889999999999999999998875 346999999999999999999998887678999999 8876421
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||+|++.. +..++..+++.+.++|||||++++..
T Consensus 107 --~~~~~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 107 --TINEKFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred --hcCCCCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence 1236899999863 22457889999999999999988754
No 58
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.53 E-value=5.7e-13 Score=120.81 Aligned_cols=149 Identities=20% Similarity=0.151 Sum_probs=106.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEEE
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--------------QDTSDYIF 240 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--------------~~~i~~~~ 240 (381)
..+..+.+.++.+|||+|||.|..+..+|++ |.+|+|+|+|+..++.+.+. .++ ..+|++.+
T Consensus 28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred HHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEE
Confidence 3444445567789999999999999999995 99999999999999976432 222 24789999
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCCCCCCCCCCchhhhhhhccC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPDQCYDEHSLGPGFIKEYIFP 319 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~~~~~~~~~~~~~i~~yi~p 319 (381)
+ |+.++++. ..+.||.|+...+++|++++....+++.+.++|+|||+ ++++..... ..... .|
T Consensus 104 ~-D~~~l~~~-----~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~-~~~~g---------Pp 167 (218)
T PRK13255 104 G-DFFALTAA-----DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQ-EELAG---------PP 167 (218)
T ss_pred C-cccCCCcc-----cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCC-ccCCC---------CC
Confidence 9 99888622 23689999999999999988889999999999999997 443332111 11000 01
Q ss_pred CCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 320 SGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 320 gg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
...+.+++.+.+ . .+|.+...+..
T Consensus 168 --~~~~~~el~~~~-~-~~~~i~~~~~~ 191 (218)
T PRK13255 168 --FSVSDEEVEALY-A-GCFEIELLERQ 191 (218)
T ss_pred --CCCCHHHHHHHh-c-CCceEEEeeec
Confidence 234667775544 2 34777766553
No 59
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.52 E-value=9e-16 Score=121.67 Aligned_cols=98 Identities=23% Similarity=0.346 Sum_probs=64.4
Q ss_pred EEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEch
Q 047022 189 LEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICG 267 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~ 267 (381)
||||||+|.++..++++ ++.+++++|+|+.|++.++++....+.. +...... +..+... ....++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~-~~~~~~~----~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRF-DVLDLFD----YDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE---SSS-------CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEe-ecCChhh----cccccccceehhhh
Confidence 79999999999999887 6789999999999999999998876543 3333333 2222210 01225999999999
Q ss_pred hhHhhChhcHHHHHHHHHhccccCceE
Q 047022 268 MIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 268 ~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+++|+ +++..+++++.++|||||.+
T Consensus 75 vl~~l--~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHL--EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS----S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhh--hhHHHHHHHHHHHcCCCCCC
Confidence 99999 67899999999999999974
No 60
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=117.15 Aligned_cols=128 Identities=21% Similarity=0.328 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHcC---CCCCC-EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 168 GQIRKVSVLIEKVK---LVKGQ-EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 168 aq~~~~~~l~~~l~---~~~~~-~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
|+.+.++.+.+... +.... +|||+|||.|.+...+++. .....+|+|.|+..++.|+..++..++++.|+|.+.
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~- 125 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL- 125 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe-
Confidence 55666666666554 44443 9999999999999999997 445799999999999999999999999988999999
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhCh------hcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGH------DYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~------~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
|+.+.. +..++||+|.--+.+..++- ..+..|+..+.++|+|||+++|+.+++.
T Consensus 126 DI~~~~------~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 126 DITDPD------FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eccCCc------ccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 998754 56789999998777665532 1245788999999999999999987754
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=6e-13 Score=123.51 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=106.8
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSE 217 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~ 217 (381)
++. +...+++.|.|.++..... ...+..+ ... ..++.+|||+|||+|.+++.+++. +. +|+|+|+|+
T Consensus 85 ~~~-~~i~i~p~~afgtg~h~tt--------~~~l~~l-~~~-~~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~ 152 (250)
T PRK00517 85 PDE-INIELDPGMAFGTGTHPTT--------RLCLEAL-EKL-VLPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDP 152 (250)
T ss_pred CCe-EEEEECCCCccCCCCCHHH--------HHHHHHH-Hhh-cCCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCH
Confidence 555 6788899999877765321 1112222 222 357889999999999999988775 54 699999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 218 LQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 218 ~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+++.|++++..+++.+++.+..+ + .+||+|+++...+. ...+++++.++|||||.++++
T Consensus 153 ~~l~~A~~n~~~~~~~~~~~~~~~-~--------------~~fD~Vvani~~~~-----~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 153 QAVEAARENAELNGVELNVYLPQG-D--------------LKADVIVANILANP-----LLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred HHHHHHHHHHHHcCCCceEEEccC-C--------------CCcCEEEEcCcHHH-----HHHHHHHHHHhcCCCcEEEEE
Confidence 999999999988776433333222 1 26999999754332 467899999999999998887
Q ss_pred cCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 298 VPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
.... ....++.+.+. +.||.+......
T Consensus 213 gi~~----------------------~~~~~v~~~l~-~~Gf~~~~~~~~ 239 (250)
T PRK00517 213 GILE----------------------EQADEVLEAYE-EAGFTLDEVLER 239 (250)
T ss_pred ECcH----------------------hhHHHHHHHHH-HCCCEEEEEEEe
Confidence 4211 12334445554 489998776543
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=2e-13 Score=138.36 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=95.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++.. +..+++++..+ |+.....
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~-d~~~~~~--- 97 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCA-DVTSPDL--- 97 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEe-ccccccc---
Confidence 346677777667889999999999999999986 779999999999998876532 23357999999 9864210
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.++||+|++..+++|++++....+++++.++|||||++++..
T Consensus 98 -~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 -NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred -CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 145688999999999999987778899999999999999987754
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.51 E-value=6.3e-13 Score=117.08 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=101.6
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.+...++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++...+. ++++..+ |..+..
T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~-d~~~~~------- 79 (179)
T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMT-DLFKGV------- 79 (179)
T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEc-cccccc-------
Confidence 334444456679999999999999999986 55999999999999999999987765 5888888 876543
Q ss_pred CCCcccEEEEchhhHhhChh-------------------cHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhh
Q 047022 256 FLGNFSTVFICGMIEAVGHD-------------------YMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEY 316 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~-------------------~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~y 316 (381)
.++||+|+++..+.+.++. -...+++++.++|||||.+++..+...
T Consensus 80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-------------- 144 (179)
T TIGR00537 80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-------------- 144 (179)
T ss_pred -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--------------
Confidence 2589999998766544321 146789999999999999877653211
Q ss_pred ccCCCCCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 317 IFPSGCLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 317 i~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
...++...+. +.||.++.+...
T Consensus 145 --------~~~~~~~~l~-~~gf~~~~~~~~ 166 (179)
T TIGR00537 145 --------GEPDTFDKLD-ERGFRYEIVAER 166 (179)
T ss_pred --------ChHHHHHHHH-hCCCeEEEEEEe
Confidence 1234445554 479988776554
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.51 E-value=1.2e-12 Score=119.16 Aligned_cols=147 Identities=11% Similarity=0.121 Sum_probs=100.6
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+.++++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.+++... .++.++.+ |....... .. .
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~-D~~~~~~~--~~-l 138 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILA-DARKPERY--AH-V 138 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEEC-CCCCcchh--hh-c
Confidence 35888999999999999999999999873 468999999999999887776543 47899999 87642100 00 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhc
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSS 336 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~ 336 (381)
.++||+|++.... +.....+++++.++|||||.++|+++....+ .... |. ....+.++.+. +
T Consensus 139 ~~~~D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-~~~~---------~~---~~~~~~~~~l~-~ 200 (226)
T PRK04266 139 VEKVDVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSID-VTKD---------PK---EIFKEEIRKLE-E 200 (226)
T ss_pred cccCCEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccccc-CcCC---------HH---HHHHHHHHHHH-H
Confidence 2569999975211 1123456899999999999999876542211 1110 00 00123344444 5
Q ss_pred CCcEEEEEEecch
Q 047022 337 SRLCVEHLENIET 349 (381)
Q Consensus 337 ~Gf~v~~~~~~~~ 349 (381)
+||+++..+++.+
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 8999999888754
No 65
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=3.2e-13 Score=122.22 Aligned_cols=114 Identities=19% Similarity=0.180 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-.....+++.+.++++++|||||||+|.++..+++.. +.+|+++|+++++++.+++++...++. ++++..+ |....
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~g-d~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVG-DGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC-CcccC
Confidence 3455678888889999999999999999999988763 369999999999999999999988874 7999999 98665
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. ...++||+|++....++++ +.+.+.|||||++++...
T Consensus 140 ~------~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 140 Y------EENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred C------CcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEEc
Confidence 4 1347899999987665542 346678999999877653
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=3.8e-13 Score=127.35 Aligned_cols=132 Identities=17% Similarity=0.319 Sum_probs=100.3
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY 222 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~ 222 (381)
....+++.|.|.++.... .+....+++.+ ..++.+|||+|||+|.+++.+++....+|+++|+|+.+++.
T Consensus 128 ~~i~ldpg~aFgtG~h~t---------t~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPT---------TSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred EEEEECCCCcccCCCCHH---------HHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 556788888887665532 22222333433 34779999999999999998887533589999999999999
Q ss_pred HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 223 a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|++++..+++.+++.+... +.... ..++||+|+++...+. ...++.++.++|||||.++++.
T Consensus 198 a~~n~~~n~~~~~~~~~~~-~~~~~--------~~~~fDlVvan~~~~~-----l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 198 ARKNAELNQVSDRLQVKLI-YLEQP--------IEGKADVIVANILAEV-----IKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred HHHHHHHcCCCcceEEEec-ccccc--------cCCCceEEEEecCHHH-----HHHHHHHHHHHcCCCcEEEEEe
Confidence 9999998888777777776 63222 3478999999865443 4678999999999999988874
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.50 E-value=8.7e-14 Score=121.31 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=90.5
Q ss_pred HHHHHHHH-HcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIE-KVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~-~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+|...++. .+.-..-.++||+|||.|.++..++.+ ..+++++|+|+..++.|++++... ++|++.+. |+.+..
T Consensus 29 ~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~-dvp~~~- 102 (201)
T PF05401_consen 29 RKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQA-DVPEFW- 102 (201)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES--TTT---
T ss_pred HHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEEC-cCCCCC-
Confidence 34444444 566566689999999999999999997 569999999999999999998643 48999999 887665
Q ss_pred CCccccCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+.++||+|+.+++++++.+ +++..+++.+...|+|||.+++..
T Consensus 103 ------P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 103 ------PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5689999999999999975 578899999999999999988865
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.1e-13 Score=123.29 Aligned_cols=132 Identities=22% Similarity=0.288 Sum_probs=97.5
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLK 221 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~ 221 (381)
-..-+|+.|.|-.|..++. ...-..++++ .+++.+|||+|||+|-+++.+++- |+ +++|+|++|..++
T Consensus 131 ~~i~lDPGlAFGTG~HpTT---------~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~ 199 (300)
T COG2264 131 LNIELDPGLAFGTGTHPTT---------SLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVE 199 (300)
T ss_pred eEEEEccccccCCCCChhH---------HHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHH
Confidence 4567888888876655442 2222333333 248899999999999999999984 76 5999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 222 YAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 222 ~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|++++..+++...++.... +....+ ..++||+||++- +..+ ...+...+.+.|||||+++++.
T Consensus 200 aa~eNa~~N~v~~~~~~~~~-~~~~~~-------~~~~~DvIVANI-LA~v----l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 200 AARENARLNGVELLVQAKGF-LLLEVP-------ENGPFDVIVANI-LAEV----LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred HHHHHHHHcCCchhhhcccc-cchhhc-------ccCcccEEEehh-hHHH----HHHHHHHHHHHcCCCceEEEEe
Confidence 99999999988743333333 333333 336999999985 3333 4788899999999999988874
No 69
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=119.88 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=89.1
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..|||+|||+|..-.+.--.++++|+++|+++.|-+++.+.+.++. +.++. |.++ +.++++ .+++++||.||
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva-~ge~l~-----~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVA-DGENLP-----QLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEee-chhcCc-----ccccCCeeeEE
Confidence 4689999999998877765578999999999999999999998873 44676 8999 999988 45789999999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+..+++.+ +++.+.++++.++|||||++++
T Consensus 151 ~TlvLCSv--e~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 151 CTLVLCSV--EDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEEEEecc--CCHHHHHHHHHHhcCCCcEEEE
Confidence 99999988 7799999999999999999554
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=4.7e-13 Score=121.45 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.++++.+|||||||+|.++..+++.. ..+|+++|+++++++.|++++...++ +++++..+ |..+..
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~-d~~~~~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVG-DGTQGW 141 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEEC-CcccCC
Confidence 344577788888999999999999999999998873 34799999999999999999999888 48999999 987654
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ ...+||+|++.....+++ +.+.+.|+|||++++....
T Consensus 142 ~------~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 142 E------PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPVGE 179 (215)
T ss_pred c------ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEEcC
Confidence 1 236899999986655543 3467889999998876543
No 71
>PRK06202 hypothetical protein; Provisional
Probab=99.49 E-value=3.8e-13 Score=123.49 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=82.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.++.+|||+|||+|.++..+++. ++.+|+|+|+|++|++.|+++.... ++++... +...++ ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~-~~~~l~------~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQA-VSDELV------AEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEE-eccccc------ccC
Confidence 56789999999999999888753 2469999999999999998875432 4667666 666665 245
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|+++.+++|+++++...+++++.++++ |.+++..
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 78999999999999987667789999999998 4545443
No 72
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.48 E-value=9.1e-13 Score=115.11 Aligned_cols=106 Identities=20% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++++ +..+|+++|+|+.+++.+++++..+++.+ +++... |..+.. ..++||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~-d~~~~~-------~~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQS-DLFEAL-------PDGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEES-STTTTC-------CTTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccc-cccccc-------cccceeE
Confidence 6779999999999999999997 44589999999999999999999999875 999999 886644 4589999
Q ss_pred EEEchhhHhhCh---hcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGH---DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~---~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|+|+--++.-.. .-...+++.+.+.|||||.+++..
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 999854432221 236789999999999999987654
No 73
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.47 E-value=2.7e-12 Score=114.58 Aligned_cols=152 Identities=15% Similarity=0.166 Sum_probs=103.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l 252 (381)
+.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+|+++++.++++ ++++..+ |+.+ ++
T Consensus 5 ~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~-d~~~~l~---- 69 (194)
T TIGR02081 5 ESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQG-DLDEGLE---- 69 (194)
T ss_pred HHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEE-Ehhhccc----
Confidence 3444444 47789999999999999998876677899999999999888642 4678888 8765 32
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCC-----C-chhhhhh--hc---cCCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHS-----L-GPGFIKE--YI---FPSG 321 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-----~-~~~~i~~--yi---~pgg 321 (381)
.+.+++||+|+++.+++|+ .++..+++++.+.++ ..+++.|+..+.... . ....... |. .|..
T Consensus 70 -~~~~~sfD~Vi~~~~l~~~--~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (194)
T TIGR02081 70 -AFPDKSFDYVILSQTLQAT--RNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNI 143 (194)
T ss_pred -ccCCCCcCEEEEhhHhHcC--cCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCc
Confidence 1345789999999999999 468888888877655 456666654321100 0 0000010 00 1223
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEec
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENI 347 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~ 347 (381)
..++..++.+.+ +++||++++...+
T Consensus 144 ~~~s~~~~~~ll-~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 144 HFCTIADFEDLC-GELNLRILDRAAF 168 (194)
T ss_pred ccCcHHHHHHHH-HHCCCEEEEEEEe
Confidence 467888886554 4699999887665
No 74
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.47 E-value=2.9e-13 Score=121.60 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=88.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~~~fD 261 (381)
++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.|++++...++ .++++..+ |+ ..++. .+..++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~-d~~~~l~~----~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCG-DAVEVLLD----MFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEec-CHHHHHHH----HcCccccc
Confidence 5679999999999999999886 567999999999999999999988777 47999999 98 55431 12457899
Q ss_pred EEEEchhhHhhC------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVG------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|++.....+.. ......+++++.++|||||.++++.+.
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999875432211 112478999999999999999988654
No 75
>PLN03075 nicotianamine synthase; Provisional
Probab=99.47 E-value=7.2e-13 Score=124.01 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=92.8
Q ss_pred HHcCCCCCCEEEEecCCchHHHHH-HH-Hh-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEecCccccCcCCcc
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIE-IV-RQ-TGCKYTGITLSELQLKYAEIKVKE-AGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~-la-~~-~~~~v~gvDis~~~~~~a~~~~~~-~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+...++.+|+|||||.|.++.. ++ .. ++++++++|+++++++.|++.+.. .++.++++|..+ |+.+..+
T Consensus 117 ~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~-Da~~~~~---- 191 (296)
T PLN03075 117 SQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTA-DVMDVTE---- 191 (296)
T ss_pred HHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEEC-chhhccc----
Confidence 333334678999999998755433 33 23 678999999999999999999964 788889999999 9987641
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..+.||+|++. ++.++..++...+++.+.+.|+|||.+++...
T Consensus 192 --~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 192 --SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred --ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 24789999999 88888667899999999999999999988763
No 76
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.46 E-value=8.6e-13 Score=127.34 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=95.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++....++++.+|||+|||+|.+++.++. .+.+++|+|+++.|++.++++++..++.+ +++..+ |+.+++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~-D~~~l~------ 243 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRG-DATKLP------ 243 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEec-chhcCC------
Confidence 455566778999999999999999998877 58999999999999999999999988874 899999 999887
Q ss_pred cCCCcccEEEEchhhH-------hhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 255 LFLGNFSTVFICGMIE-------AVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~-------~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+..++||+|+++-... +.....+..+++++.++|||||++++..++
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 3457899999963211 111123578999999999999998887764
No 77
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=7.1e-13 Score=134.76 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=91.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...++.+|||+|||+|.++..+++. ++.+++|+|+|+.|++.|+++....+ .++++..+ |..+++. .+++++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~g-Da~dLp~----~fedeS 487 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKG-DAINLSS----SFEKES 487 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEc-chHhCcc----ccCCCC
Confidence 3446889999999999999888876 67899999999999999998876544 35888889 8877641 145688
Q ss_pred ccEEEEchhhHhhC-----------hhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVG-----------HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~-----------~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
||+|+++.+++++. .++...+++++.++|||||.+++..
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999999988762 3467899999999999999988864
No 78
>PRK14967 putative methyltransferase; Provisional
Probab=99.45 E-value=6e-12 Score=114.84 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+...+..+.+.++.+|||+|||+|.++..+++. +. +++++|+|+.+++.+++++...++ ++++..+ |+.+..
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~-d~~~~~--- 97 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRG-DWARAV--- 97 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEEC-chhhhc---
Confidence 334556666778899999999999999999885 54 999999999999999999887765 4888888 886543
Q ss_pred ccccCCCcccEEEEchhhHhhC-------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVG-------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+++--..... ...+..+++++.++|||||++++...
T Consensus 98 ----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 98 ----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred ----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 347899999973211110 01246688999999999999877543
No 79
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.44 E-value=9.8e-13 Score=123.80 Aligned_cols=132 Identities=25% Similarity=0.355 Sum_probs=96.6
Q ss_pred cccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCH
Q 047022 139 NELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSE 217 (381)
Q Consensus 139 ~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~ 217 (381)
.+. ....+++.|.|-+|..++ .+..-.+++.+ ..++.+|||+|||+|.+++.+++. |+ +|+++|++|
T Consensus 127 ~~~-~~I~idPg~AFGTG~H~T---------T~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp 194 (295)
T PF06325_consen 127 PDE-IVIEIDPGMAFGTGHHPT---------TRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDP 194 (295)
T ss_dssp TTS-EEEEESTTSSS-SSHCHH---------HHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSC
T ss_pred CCc-EEEEECCCCcccCCCCHH---------HHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCH
Confidence 444 567889999887665432 33333444444 467889999999999999999985 65 799999999
Q ss_pred HHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 218 LQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 218 ~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..++.|++++..+++.+++.+. ...+. ..++||+|+++-...- +...+..+.++|+|||.++++
T Consensus 195 ~Av~~a~~N~~~N~~~~~~~v~---~~~~~--------~~~~~dlvvANI~~~v-----L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 195 LAVEAARENAELNGVEDRIEVS---LSEDL--------VEGKFDLVVANILADV-----LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp HHHHHHHHHHHHTT-TTCEEES---CTSCT--------CCS-EEEEEEES-HHH-----HHHHHHHCHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeeEEEE---Eeccc--------ccccCCEEEECCCHHH-----HHHHHHHHHHhhCCCCEEEEc
Confidence 9999999999999998766553 22222 2388999999844433 467888899999999998887
Q ss_pred c
Q 047022 298 V 298 (381)
Q Consensus 298 ~ 298 (381)
.
T Consensus 259 G 259 (295)
T PF06325_consen 259 G 259 (295)
T ss_dssp E
T ss_pred c
Confidence 4
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.43 E-value=6.1e-12 Score=111.17 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=89.7
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~~d~~~l~~~~l~~ 254 (381)
+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+++++.+++++...++.++ +.+..+ |..+..
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-d~~~~~------ 86 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-DLFEPF------ 86 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-cccccc------
Confidence 344444467889999999999999999987 89999999999999999999988777544 888888 876533
Q ss_pred cCCCcccEEEEchhhHhhC-------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGMIEAVG-------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~-------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+++..+.+.+ ...+..+++++.++|||||.+++..+
T Consensus 87 -~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 87 -RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred -cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 335899999865432210 12256789999999999999877653
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.42 E-value=2e-12 Score=125.72 Aligned_cols=131 Identities=15% Similarity=0.232 Sum_probs=98.7
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 154 SCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 154 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
.++.|+...-+ .. -+.+++.+....+.+|||+|||+|.+++.++++ ++.+|+++|+|+.+++.+++++..++.
T Consensus 204 ~~gVFs~~~LD--~G----trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 204 HANVFSRTGLD--IG----ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred cCCccCCCCcC--hH----HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 36777654322 22 224666776555679999999999999999987 678999999999999999999987764
Q ss_pred C--CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhh---ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 233 Q--DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAV---GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 233 ~--~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~---~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. .++++... |..+.. ..++||+|+|+-.++.. .+.....+|+.+.++|+|||.+++..
T Consensus 278 ~~~~~v~~~~~-D~l~~~-------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 278 EALDRCEFMIN-NALSGV-------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCceEEEEEc-cccccC-------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 36888888 865422 33689999998665432 22235688999999999999988775
No 82
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=117.45 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=100.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+..........+|||+|||.|.+++.++++ ..+++++||+++++.+.|+++++.+++.++|+++.. |+.+....
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~-Di~~~~~~--- 110 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA-DIKEFLKA--- 110 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh-hHHHhhhc---
Confidence 3445555666789999999999999999998 559999999999999999999999999999999999 99887632
Q ss_pred ccCCCcccEEEEchhh----------------HhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 254 ELFLGNFSTVFICGMI----------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l----------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....+||+|+|+--+ .|...-+.+++++.+.++|||||.+.+..+..+
T Consensus 111 -~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er 174 (248)
T COG4123 111 -LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER 174 (248)
T ss_pred -ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH
Confidence 344679999996422 232223578999999999999999888776544
No 83
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.42 E-value=7.2e-14 Score=123.11 Aligned_cols=183 Identities=27% Similarity=0.332 Sum_probs=126.9
Q ss_pred HhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC
Q 047022 129 RHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC 208 (381)
Q Consensus 129 ~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~ 208 (381)
.=|..-||...+. |...+-....|+- -.++..++.+++..+-.++||+|||||-....+-.. -.
T Consensus 85 aYVe~LFD~~Ae~-Fd~~LVdkL~Y~v--------------P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~ 148 (287)
T COG4976 85 AYVETLFDQYAER-FDHILVDKLGYSV--------------PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-AD 148 (287)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhcCcc--------------HHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-Hh
Confidence 3466677777777 7777766666642 245667788888778889999999999998887664 56
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc
Q 047022 209 KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL 288 (381)
Q Consensus 209 ~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L 288 (381)
+++|+|||.+|++.|.++ |+.+. ..+. +.....+. ....+||+|++..++.+++ +++.+|-.+...|
T Consensus 149 ~ltGvDiS~nMl~kA~eK----g~YD~--L~~A-ea~~Fl~~----~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L 215 (287)
T COG4976 149 RLTGVDISENMLAKAHEK----GLYDT--LYVA-EAVLFLED----LTQERFDLIVAADVLPYLG--ALEGLFAGAAGLL 215 (287)
T ss_pred hccCCchhHHHHHHHHhc----cchHH--HHHH-HHHHHhhh----ccCCcccchhhhhHHHhhc--chhhHHHHHHHhc
Confidence 899999999999999876 33221 1222 32211110 1347899999999999996 5899999999999
Q ss_pred ccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEecc
Q 047022 289 AENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLENIE 348 (381)
Q Consensus 289 kpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~~~ 348 (381)
+|||.+.+++.+-.-. ..|. +-|.-........+..+.+..||+++.++...
T Consensus 216 ~~gGlfaFSvE~l~~~-----~~f~---l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 216 APGGLFAFSVETLPDD-----GGFV---LGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred CCCceEEEEecccCCC-----CCee---cchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 9999999987543211 1121 11222222233444566667999999988753
No 84
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.41 E-value=5.4e-13 Score=108.76 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=89.1
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
|.+|||+|||+|.++..+++....+++++|+++..++.++.++...++.+++++..+ |+.+... .+..++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~----~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVG-DARDLPE----PLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEES-HHHHHHH----TCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEEC-chhhchh----hccCceeEEEE
Confidence 568999999999999999987338999999999999999999999998889999999 9987641 14568999999
Q ss_pred EchhhHhhC------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 265 ICGMIEAVG------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 265 s~~~l~~~~------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++--+.... .+....+++++.++|||||.+++.+|
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 976443211 12357889999999999999887664
No 85
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=2.3e-12 Score=121.18 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=79.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+..+|||+|||+|.++..+++.. +..++|+|+|+.+++.|+++. .++.+..+ |..+++ +.++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~-d~~~lp------~~~~ 150 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVA-SSHRLP------FADQ 150 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEe-ecccCC------CcCC
Confidence 455789999999999999988752 247999999999999998763 36889999 998887 5678
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+||+|++... +..++++.++|||||++++..|...
T Consensus 151 sfD~I~~~~~---------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 151 SLDAIIRIYA---------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ceeEEEEecC---------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 9999999743 2235789999999999888876543
No 86
>PTZ00146 fibrillarin; Provisional
Probab=99.40 E-value=1.1e-11 Score=115.59 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=98.6
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+.++++++|||+|||+|.++.++++.. ..+|+++|+|+.+.+...+.+... .+|.++.. |++... .+ .
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~-Da~~p~--~y-~ 197 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIE-DARYPQ--KY-R 197 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEEC-CccChh--hh-h
Confidence 345668899999999999999999999874 368999999998665554444322 47889999 886421 00 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHH----H
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRV----T 330 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~----~ 330 (381)
...++||+|++... . +++...++.++.++|||||.++|........ .-|+++++ +
T Consensus 198 ~~~~~vDvV~~Dva---~-pdq~~il~~na~r~LKpGG~~vI~ika~~id-----------------~g~~pe~~f~~ev 256 (293)
T PTZ00146 198 MLVPMVDVIFADVA---Q-PDQARIVALNAQYFLKNGGHFIISIKANCID-----------------STAKPEVVFASEV 256 (293)
T ss_pred cccCCCCEEEEeCC---C-cchHHHHHHHHHHhccCCCEEEEEEeccccc-----------------cCCCHHHHHHHHH
Confidence 12357999999753 1 2345667788999999999998865332210 11233333 3
Q ss_pred HHHHhcCCcEEEEEEecch
Q 047022 331 SAMTSSSRLCVEHLENIET 349 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~ 349 (381)
+.+. ++||++++..++.+
T Consensus 257 ~~L~-~~GF~~~e~v~L~P 274 (293)
T PTZ00146 257 QKLK-KEGLKPKEQLTLEP 274 (293)
T ss_pred HHHH-HcCCceEEEEecCC
Confidence 4454 48999888877654
No 87
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.39 E-value=8.4e-12 Score=117.85 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. +.++||
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-D~~~~~-------~~~~fD 191 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-DLFAAL-------PGRKYD 191 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-chhhcc-------CCCCcc
Confidence 34579999999999999999987 568999999999999999999999988778999999 975422 235799
Q ss_pred EEEEch------hhH-------hhCh----------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICG------MIE-------AVGH----------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~------~l~-------~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|+++- .+. |-+. +.+..+++.+.++|+|||++++.+.
T Consensus 192 ~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 192 LIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 999961 111 1110 1246788999999999999988764
No 88
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=8.3e-12 Score=111.60 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=89.5
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+.+.++.+|||+|||+|.++..+++. ++.+|+++|+|+.+++.+++++...++. ++++..+ |..+...
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~-d~~~~~~---- 104 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG-SAPECLA---- 104 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC-chHHHHh----
Confidence 5677788889999999999999999999865 5689999999999999999999888874 7999999 8754210
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....+|.|+... ......+++++.++|+|||++++..+
T Consensus 105 -~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 -QLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred -hCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 1123467766532 13568899999999999999888764
No 89
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=7.2e-12 Score=113.36 Aligned_cols=111 Identities=19% Similarity=0.151 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
....+++.+.++++.+|||+|||+|..+..+++. ..+++++|+++++++.+++++...++. ++++..+ |..+..
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~-d~~~~~--- 139 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG-DGWKGW--- 139 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC-CcccCC---
Confidence 3446677788889999999999999999988875 569999999999999999999988875 6999999 875532
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++...+++++ +.+.+.|+|||++++...
T Consensus 140 ---~~~~~fD~I~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 ---PAYAPFDRILVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CcCCCcCEEEEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 1237899999987766652 356789999999888765
No 90
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.38 E-value=5.6e-12 Score=121.75 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=89.9
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+......+|||+|||+|.++..++++ ++.+|+++|+|+.+++.+++++..+++. .++... |....
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~-D~~~~------ 257 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFAS-NVFSD------ 257 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEc-ccccc------
Confidence 3445554444568999999999999999987 5679999999999999999999988764 566777 76432
Q ss_pred ccCCCcccEEEEchhhHhhC---hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 254 ELFLGNFSTVFICGMIEAVG---HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
..++||+|+|+..+++.. ......+++++.+.|||||.+++...
T Consensus 258 --~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 258 --IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred --cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 237899999998776532 13467899999999999999877654
No 91
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=2e-12 Score=115.49 Aligned_cols=113 Identities=21% Similarity=0.249 Sum_probs=88.8
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
...+|||||||+|.++..+++. ++..++|+|+++.+++.|++++...++. +++++.+ |+.++... .++.+++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~-d~~~~~~~---~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCG-DANELLDK---FFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEcc-CHHHHHHh---hCCCCceeE
Confidence 4569999999999999999987 6789999999999999999999888885 8999999 99765311 023468999
Q ss_pred EEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCC
Q 047022 263 VFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 263 Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
|++.....+.... ....+++++.++|||||.+++.+...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9987543322110 12578999999999999988876543
No 92
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.6e-12 Score=111.03 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.....+++.+.++++++|||||||+|+.+..+++- ..+|+.+|..++..+.|++++...|+. +|.+.++ |...--+
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~g-DG~~G~~- 134 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHG-DGSKGWP- 134 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEEC-CcccCCC-
Confidence 44568899999999999999999999999999985 559999999999999999999999986 5999999 8765431
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...+||+|+.......+|. .+.+.|||||++++-+.
T Consensus 135 -----~~aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 -----EEAPYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred -----CCCCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 3478999999988888753 35778999999887665
No 93
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.38 E-value=5.7e-12 Score=120.08 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+++.+ +++.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++.......++.++.+ |+.+..+
T Consensus 54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-D~~~~~~- 129 (301)
T TIGR03438 54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA-DFTQPLA- 129 (301)
T ss_pred HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-cccchhh-
Confidence 34455554 367899999999999999998873 68999999999999999998775432235777899 9876320
Q ss_pred CccccCCC----cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 251 NMTELFLG----NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 251 ~l~~~~~~----~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+... ...++++..++.++++++...++++++++|+|||.+++.+.
T Consensus 130 ----~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 130 ----LPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ----hhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1111 22344445678888877888999999999999999887653
No 94
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.37 E-value=1.4e-11 Score=106.67 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=95.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.+|.+.|+++++|||||+|+.++.++.. +.++|+++|-+++.++..++++...|+ ++++++.+ ++.+.-+
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g-~Ap~~L~---- 98 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEG-DAPEALP---- 98 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEec-cchHhhc----
Confidence 5688999999999999999999999999954 678999999999999999999999995 59999999 8865531
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++|.|+..+. . +.+..++.+...|||||++++..
T Consensus 99 --~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 99 --DLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred --CCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 1237999999876 3 45899999999999999998865
No 95
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.36 E-value=2.7e-11 Score=106.98 Aligned_cols=163 Identities=19% Similarity=0.177 Sum_probs=118.1
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc--cccCCCccc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM--TELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l--~~~~~~~fD 261 (381)
+.+|||||||+|..+.+++++ +.....-.|+++..+...+..+...+++.-..-... |+...+-.-. ..+..++||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-Dv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-DVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-ecCCCCCccccccccCCCCcc
Confidence 335999999999999999998 778999999999988888888887777522233444 6554420000 001246899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCC-ch-hhh--hhhccCCCCCCCHHHHHHHHHhcC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSL-GP-GFI--KEYIFPSGCLPSLRRVTSAMTSSS 337 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~-~~-~~i--~~yi~pgg~lp~~~~~~~~l~~~~ 337 (381)
.|+|.+|+|-++......+|+.+.++|+|||.+++-.|-.....+.. .. .|- .+--.|...+..++++ ..+.+++
T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v-~~lA~~~ 183 (204)
T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDV-EALAAAH 183 (204)
T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHH-HHHHHHC
Confidence 99999999999988899999999999999999988776544333322 11 121 1223577778889887 5666679
Q ss_pred CcEEEEEEecch
Q 047022 338 RLCVEHLENIET 349 (381)
Q Consensus 338 Gf~v~~~~~~~~ 349 (381)
||++++..++..
T Consensus 184 GL~l~~~~~MPA 195 (204)
T PF06080_consen 184 GLELEEDIDMPA 195 (204)
T ss_pred CCccCcccccCC
Confidence 999988777654
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.35 E-value=5.6e-12 Score=122.23 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=97.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+++.+....+..+||||||+|.++..+|+. ++..++|+|+++.+++.+.+++...++. ++.++.+ |+..+..
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~-DA~~ll~---- 186 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINY-DARLLLE---- 186 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC-CHHHhhh----
Confidence 4566666566779999999999999999987 6789999999999999999999998885 7999999 9876531
Q ss_pred ccCCCcccEEEEchhhHhhChh----cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHD----YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~----~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
.++++++|.|++.....+.... -...+++++.++|+|||.+.+.+....|
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y 240 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELY 240 (390)
T ss_pred hCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHH
Confidence 1456899999987543322111 1268999999999999998887766544
No 97
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=5e-11 Score=110.35 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.+..+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+++.+++.+++++...++. ++++..+ |+.+..
T Consensus 76 l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~-d~~~~~-- 150 (251)
T TIGR03534 76 LVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQS-DWFEPL-- 150 (251)
T ss_pred HHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEEC-chhccC--
Confidence 3344555543 34569999999999999999987 5679999999999999999999888875 7999999 986632
Q ss_pred CccccCCCcccEEEEchh------hHhhCh------------------hcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGM------IEAVGH------------------DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+++-. ++++.. ..+..+++.+.++|+|||.+++..
T Consensus 151 -----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 151 -----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4578999998421 111110 123478899999999999988764
No 98
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.35 E-value=2e-11 Score=115.50 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=87.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+..+|||+|||+|.+++.++.. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. ...+||+
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-d~~~~~-------~~~~fDl 185 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-NLFEPL-------AGQKIDI 185 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-chhccC-------cCCCccE
Confidence 3369999999999999999987 467999999999999999999998888767999999 886532 2348999
Q ss_pred EEEch-------------hhHhhCh----------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICG-------------MIEAVGH----------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~-------------~l~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+++- +..|-|. ..+..+++.+.+.|+|||.+++.+..
T Consensus 186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99961 2222211 24668899999999999999887753
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=115.74 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=85.6
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|||+|||+|.+++.+++. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. +.++||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~l-------~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-DLFAAL-------PGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-chhhhC-------CCCCccEEE
Confidence 68999999999999999987 568999999999999999999999888778999999 975432 235899999
Q ss_pred Ech------hh-------HhhCh----------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 265 ICG------MI-------EAVGH----------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 265 s~~------~l-------~~~~~----------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++- .+ .|-|. +.+..+++.+.+.|+|||.+++.+.
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 962 11 11111 2246788999999999999988764
No 100
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.31 E-value=1e-11 Score=111.64 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
-..+..+++.+.++||++|||||||+|+.+..++.-.+ ..|+++|+.+...+.|++++...+.. ++.+..+ |....
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~g-dg~~g 135 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVG-DGSEG 135 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES--GGGT
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEc-chhhc
Confidence 35566889999999999999999999999999987633 47999999999999999999998875 8999999 87654
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+ ...+||+|++......+| . .+.+.|++||++++-...
T Consensus 136 ~~------~~apfD~I~v~~a~~~ip----~----~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP------EEAPFDRIIVTAAVPEIP----E----ALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG------GG-SEEEEEESSBBSS------H----HHHHTEEEEEEEEEEESS
T ss_pred cc------cCCCcCEEEEeeccchHH----H----HHHHhcCCCcEEEEEEcc
Confidence 32 347899999998776653 2 256779999998876553
No 101
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.7e-11 Score=107.91 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=99.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..|+..+++.||++|||.|.|+|.++.+++.. +..+|+.+|+.++..+.|+++++..++.+++++..+ |..+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-Dv~~~~--- 159 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-DVREGI--- 159 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-cccccc---
Confidence 47889999999999999999999999999976 447999999999999999999999999988999999 998875
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
....||+|+.- + .++-.+++.+.++|||||.+++-.|+
T Consensus 160 ----~~~~vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 160 ----DEEDVDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ----cccccCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 33589999987 6 45899999999999999998876654
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=4e-11 Score=114.56 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.++++++|||||||+|.++..+++..+ ..|+++|+++++++.|++++...++ +++.+..+ |..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~g-D~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCG-DGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeC-Chhhcc
Confidence 3445677888888999999999999999999998743 4799999999999999999988887 47999999 887654
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ ..++||+|++...+++++ ..+.+.|+|||++++..
T Consensus 145 ~------~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 P------EFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred c------ccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 1 236799999986665552 23567899999977754
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.29 E-value=2.1e-11 Score=109.98 Aligned_cols=115 Identities=15% Similarity=0.108 Sum_probs=82.2
Q ss_pred HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 172 KVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 172 ~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
++..+.++.. ++++.+|||||||+|.++..+++.. +.+|+++|+++ | ... .+++++++ |+.+.+
T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~-D~~~~~ 104 (209)
T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQG-DFRDEL 104 (209)
T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEec-CCCChH
Confidence 4455566666 5789999999999999999999873 36999999998 1 122 25899999 988742
Q ss_pred c-CCc-cccCCCcccEEEEchhhHhhChh--c-------HHHHHHHHHhccccCceEEEEcC
Q 047022 249 P-TNM-TELFLGNFSTVFICGMIEAVGHD--Y-------MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~-~~l-~~~~~~~fD~Ivs~~~l~~~~~~--~-------~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. ..+ ..+..++||+|+|..+..+.+.. + ...+++.+.++|||||.+++.+.
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 0 000 01345789999997655443321 1 24689999999999999888653
No 104
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=3.6e-11 Score=110.41 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=86.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+..+|||||||+|..++.++.. .+.+++++|+++++++.|+++++..|+.++++++.+ |+.+.-+.-......++|
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g-da~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS-DALSALDQLLNNDPKPEF 145 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-cHHHHHHHHHhCCCCCCC
Confidence 45679999999999988888775 357999999999999999999999999989999999 987642100000123689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+.. ....++..+++.+.++|+|||.+++.
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999986 23345778999999999999997764
No 105
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.6e-11 Score=110.45 Aligned_cols=129 Identities=17% Similarity=0.300 Sum_probs=97.8
Q ss_pred eecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 154 SCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 154 s~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
.++.|+...-+. --+.+++.+....+.+|||+|||+|.+++.+++. +..+++.+|+|...++.+++++..+++
T Consensus 134 ~pGVFS~~~lD~------GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300)
T COG2813 134 LPGVFSRDKLDK------GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300)
T ss_pred CCCCCcCCCcCh------HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC
Confidence 356665543322 2236788888777779999999999999999998 578999999999999999999999888
Q ss_pred CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcH----HHHHHHHHhccccCceEEEEcC
Q 047022 233 QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYM----EELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 233 ~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~----~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.. ..+... |..+-. . ++||+|+|+--|+ -+..-. .++++...+.|++||.+.|...
T Consensus 208 ~~-~~v~~s-~~~~~v-------~-~kfd~IisNPPfh-~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 208 EN-TEVWAS-NLYEPV-------E-GKFDLIISNPPFH-AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred Cc-cEEEEe-cccccc-------c-ccccEEEeCCCcc-CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 63 355555 443322 1 5999999987665 232223 3899999999999999877764
No 106
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.26 E-value=7.9e-11 Score=106.69 Aligned_cols=115 Identities=17% Similarity=0.075 Sum_probs=92.0
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-----------cCCCCCeEEEEecCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-----------AGLQDTSDYIFVITVN 245 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-----------~gl~~~i~~~~~~d~~ 245 (381)
...+.+.++.+||..|||.|..+.+++++ |.+|+|+|+|+..++.+.+.... .--..+|++.++ |+.
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g-D~f 113 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA-DIF 113 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc-cCc
Confidence 34455556789999999999999999996 99999999999999987653200 001247999999 999
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
++++.. -..++||.|+-..++.+++++....+.+.+.++|+|||.+++
T Consensus 114 ~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 114 NLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred CCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 986210 123689999999999999998899999999999999999443
No 107
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=8.3e-11 Score=118.07 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=92.5
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+..+.+.+|.+|||+|||+|..+.++++.. +.+|+++|+|+.+++.+++++...|+. ++++..+ |..++.
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~-Da~~~~---- 314 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEG-DARSFS---- 314 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeC-cccccc----
Confidence 34456677889999999999999999988752 469999999999999999999998885 7999999 988765
Q ss_pred cccCCCcccEEEEc------hhh---------------HhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 TELFLGNFSTVFIC------GMI---------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l---------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
..++||+|++. +++ +++. .....++..+.++|||||++++++..-
T Consensus 315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~-~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELV-GLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred ---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34689999952 122 1111 123468999999999999988887653
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1.8e-10 Score=108.31 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=87.0
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.++..+...++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++. .....++++..+ |+.+..
T Consensus 99 ~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~-d~~~~~----- 171 (275)
T PRK09328 99 WALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG-DWFEPL----- 171 (275)
T ss_pred HHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEc-cccCcC-----
Confidence 3344445567789999999999999999987 46899999999999999999987 344457999999 885432
Q ss_pred ccCCCcccEEEEchh------hHhhC------------------hhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGM------IEAVG------------------HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~------l~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+++-- +..+. .+.+..+++++.++|+|||.+++..
T Consensus 172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3478999998521 11010 1234678889999999999988854
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=99.24 E-value=2.3e-10 Score=105.80 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.++..++++ .+.+|+++|+|+.+++.++++. .+++++.+ |+.+.. ..++||
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~-D~~e~~-------~~~kFD 128 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITS-DVFEFE-------SNEKFD 128 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEEC-chhhhc-------ccCCCc
Confidence 34579999999999999988876 3579999999999999998763 26889999 998765 346899
Q ss_pred EEEEchhhHhhChhc------------------HHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDY------------------MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~------------------~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+++-.+.|.+..+ ...+++....+|+|+|.+.+..
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 999988777654321 2467788889999999866553
No 110
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.23 E-value=5.4e-11 Score=107.77 Aligned_cols=119 Identities=22% Similarity=0.240 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEe
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-A------G----LQDTSDYIFV 241 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-~------g----l~~~i~~~~~ 241 (381)
+..+++.+..+++.+||..|||.|.-+..++++ |.+|+|+|+|+..++.+.+.... . + -.++|++.++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc
Confidence 344555667788889999999999999999996 99999999999999888443221 0 0 1246899999
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEc
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTV 298 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~ 298 (381)
|+.+++++ ..++||+|+-...+..++++....+.+.+.++|+|||. ++++.
T Consensus 105 -DfF~l~~~-----~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 105 -DFFELPPE-----DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp --TTTGGGS-----CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred -ccccCChh-----hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99998732 23689999999999999999999999999999999999 44444
No 111
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.23 E-value=7.7e-11 Score=101.90 Aligned_cols=80 Identities=14% Similarity=-0.040 Sum_probs=67.5
Q ss_pred EEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc
Q 047022 211 TGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL 288 (381)
Q Consensus 211 ~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L 288 (381)
+|+|+|++|++.|+++..... ...++++.++ |+.+++ +.+++||+|++..+++++ .+...++++++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-d~~~lp------~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-DAIDLP------FDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-chhhCC------CCCCCeeEEEecchhhcC--CCHHHHHHHHHHHc
Confidence 489999999999988765322 2347999999 999988 567899999999999999 46899999999999
Q ss_pred ccCceEEEEcC
Q 047022 289 AENGLSCSTVP 299 (381)
Q Consensus 289 kpgG~~~i~~~ 299 (381)
||||.+++...
T Consensus 72 kpGG~l~i~d~ 82 (160)
T PLN02232 72 KPGSRVSILDF 82 (160)
T ss_pred CcCeEEEEEEC
Confidence 99999876543
No 112
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.22 E-value=9.4e-11 Score=117.08 Aligned_cols=124 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..++..+.+.+|.+|||+|||+|+.+.++++.. +++|+++|+++.+++.++++++..|+..++.+..+ |....+.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~-d~~~~~~--- 303 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG-DGRGPSQ--- 303 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc-ccccccc---
Confidence 356667788899999999999999999999863 47999999999999999999999887633444666 6554331
Q ss_pred cccCCCcccEEEEc------hhhHhhChh--------------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFIC------GMIEAVGHD--------------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~~~~~--------------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
....++||.|++. +++.+.++- ....+++++.++|||||.+++++..-.
T Consensus 304 -~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 304 -WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred -cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 0134689999852 344443320 135789999999999999888876543
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=1.6e-10 Score=108.09 Aligned_cols=117 Identities=11% Similarity=0.083 Sum_probs=90.6
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+.++++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...++. ++++... |...++
T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~-D~~~~~------ 135 (264)
T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNF-DGRVFG------ 135 (264)
T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecC-CHHHhh------
Confidence 345677899999999999999999998863 358999999999999999999998885 6999999 987765
Q ss_pred cCCCcccEEEEch------hhHhhC-------h-------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 255 LFLGNFSTVFICG------MIEAVG-------H-------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 255 ~~~~~fD~Ivs~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
...++||+|++.. ++.+-+ + .....+++.+.++|||||+++.++..-
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1335699998621 111110 0 123468999999999999988877553
No 114
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.21 E-value=2.3e-10 Score=105.10 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..|+..+++.||++|||.|.|+|.++..+++. +..+|+..|+.++..+.|+++++..|+.+++++... |+.+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~-Dv~~~g 105 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHR-DVCEEG 105 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES--GGCG-
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEec-ceeccc
Confidence 44568899999999999999999999999999987 557999999999999999999999999999999999 986432
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc-ccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL-AENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L-kpgG~~~i~~~~ 300 (381)
.. ...+..+|.|+.- +| ++-.++..+.++| ||||++++-.|+
T Consensus 106 ~~---~~~~~~~DavfLD-----lp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 106 FD---EELESDFDAVFLD-----LP--DPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp -S---TT-TTSEEEEEEE-----SS--SGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cc---ccccCcccEEEEe-----CC--CHHHHHHHHHHHHhcCCceEEEECCC
Confidence 00 0123689999987 64 4678889999999 999998776543
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.21 E-value=6.1e-10 Score=108.85 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=81.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||+|||+|.+++.+++. ++++|+++|+|+.+++.|++++...+. ++++..+ |+.+... ...++||
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~g-Dl~e~~l-----~~~~~FD 321 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHG-SWFDTDM-----PSEGKWD 321 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEc-chhcccc-----ccCCCcc
Confidence 35679999999999999999876 678999999999999999999987764 7999999 9865420 0235799
Q ss_pred EEEEchhh-----Hhh--------------C----hhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMI-----EAV--------------G----HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l-----~~~--------------~----~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+|+--. .+. + .+.+..+++.+.+.|+|||.+++..
T Consensus 322 LIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 322 IIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99995411 000 0 0124467777888999999987765
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=1.3e-10 Score=116.01 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=94.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.+|.+|||+|||+|+.+.++++.. +.+|+++|+|+.+++.+++++...|+. ++++... |...++
T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~-Da~~l~---- 301 (431)
T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIA-DAERLT---- 301 (431)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEEC-chhhhh----
Confidence 34455678899999999999999999998863 579999999999999999999999885 6899999 987764
Q ss_pred cccCCCcccEEEEc------hhhHh-------hChh-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 253 TELFLGNFSTVFIC------GMIEA-------VGHD-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~------~~l~~-------~~~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.+..++||.|++. +++.. .+.+ ...+++.++.+.|||||.++.++..-.
T Consensus 302 -~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 302 -EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred -hhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 1234689999962 22211 1111 235678999999999999888876643
No 117
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.20 E-value=1e-10 Score=104.76 Aligned_cols=121 Identities=23% Similarity=0.227 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.+-+.+..+++.. ...+||||||+.|.-++.+++. .+++|+.+|++++..+.|++.+...|+.++|+++.+ |+.
T Consensus 32 ~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~ 107 (205)
T PF01596_consen 32 ETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DAL 107 (205)
T ss_dssp HHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HH
T ss_pred HHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccH
Confidence 3444555555554 3459999999999999999987 368999999999999999999999999999999999 987
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.-+.-......++||+|+.-. ...++..+++.+.++|+|||.+++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEc
Confidence 6321000001236899999973 4467899999999999999998875
No 118
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.4e-10 Score=114.18 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=91.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+...+.+.++.+|||+|||+|..+.++++.. +.+|+++|+|+.+++.+++++...|+. +++..+ |..+++.
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~-D~~~~~~---- 307 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVG-DARDPAQ---- 307 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEc-Ccccchh----
Confidence 45566778899999999999999999999873 369999999999999999999988874 788999 9876541
Q ss_pred ccCCCcccEEEEch------hhHhhC-------h-------hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICG------MIEAVG-------H-------DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~------~l~~~~-------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+..++||.|++.. ++.+-+ . .....+++.+.++|||||++++++..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 01246799999532 111100 0 11347899999999999998887753
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.3e-10 Score=114.53 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+...+.+++|.+|||+|||+|+.+.++++.. .++|+++|+++.+++.+++++...|+. ++++..+ |..+++...
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~-D~~~~~~~~ 319 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAA-DSRNLLELK 319 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeC-Chhhccccc
Confidence 345566778899999999999999999999863 368999999999999999999999986 6999999 987764100
Q ss_pred ccccCCCcccEEEEc------hhhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 252 MTELFLGNFSTVFIC------GMIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~------~~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
....++||.|++. +++.+-++ . ....+++++.++|||||+++.++..
T Consensus 320 --~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 320 --PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred --ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 0124689999963 34433221 0 1357899999999999998877654
No 120
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.7e-10 Score=114.43 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+. ++++..+ |+.++...
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~-D~~~~~~~-- 316 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKAL-DARKVHEK-- 316 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeC-Ccccccch--
Confidence 44556677889999999999999999999863 579999999999999999999999886 5999999 98776411
Q ss_pred cccCCCcccEEEEch------hhHhhCh-------h-------cHHHHHHHHHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICG------MIEAVGH-------D-------YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~------~l~~~~~-------~-------~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+ .++||+|++.. ++.+-++ . ....+++.+.++|||||.++.++..
T Consensus 317 --~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 317 --F-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred --h-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 1 26899999742 1111110 0 1246899999999999998877654
No 121
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.19 E-value=1.7e-10 Score=90.05 Aligned_cols=103 Identities=22% Similarity=0.358 Sum_probs=84.0
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEc
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFIC 266 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~ 266 (381)
+|+|+|||.|.++..+++..+.+++++|+++.++..+++.... ....++++... |..+... ...++||+|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-----~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-LLADNVEVLKG-DAEELPP-----EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEc-Chhhhcc-----ccCCceEEEEEc
Confidence 5899999999999999875577999999999999988864333 23357899998 8887651 134789999999
Q ss_pred hhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 267 GMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 267 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++++. ......+++.+.+.|+|||.++++
T Consensus 74 ~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998873 256899999999999999998775
No 122
>PRK04457 spermidine synthase; Provisional
Probab=99.18 E-value=1.3e-10 Score=108.50 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=85.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.++.+|||||||.|.++..+++. ++.+++++|+++++++.|++.+...+..++++++.+ |+.+.-. ...++||
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~-Da~~~l~-----~~~~~yD 138 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEA-DGAEYIA-----VHRHSTD 138 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEEC-CHHHHHH-----hCCCCCC
Confidence 35679999999999999999877 678999999999999999998765444468999999 9876421 1236899
Q ss_pred EEEEchhh-HhhCh-hcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICGMI-EAVGH-DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~~l-~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|++...- ...+. -....+++.+.++|+|||++++...
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 99975310 11111 1237999999999999999888653
No 123
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.18 E-value=3e-10 Score=115.45 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=84.9
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++.. ++.+|+++|+|+.+++.|++++...++.+++++..+ |+.+.. ..++||+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-D~~~~~-------~~~~fDl 209 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-NWFENI-------EKQKFDF 209 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-chhhhC-------cCCCccE
Confidence 3568999999999999999876 578999999999999999999998888778999999 875422 3368999
Q ss_pred EEEch--------------hhHhhC----------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 263 VFICG--------------MIEAVG----------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 263 Ivs~~--------------~l~~~~----------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+|+- +..|-| -+.+..+++.+.++|+|||.+++.+.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 99942 111111 01245678889999999999887653
No 124
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.17 E-value=1.1e-10 Score=102.54 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcCCCC--CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVK--GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~--~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.|.....+.++.+.++. ..-|||||||+|-.+..+.. .|...+|+|+|+.|++.|.++--+ -.+..+ |.-
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~-~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~-DMG 103 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD-SGHQWIGVDISPSMLEQAVERELE------GDLILC-DMG 103 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc-CCceEEeecCCHHHHHHHHHhhhh------cCeeee-ecC
Confidence 35566667788887776 66899999999998888877 588999999999999999974322 245667 664
Q ss_pred c-cCcCCccccCCCcccEEEEchhhHhhCh---------hcHHHHHHHHHhccccCceEEEEc
Q 047022 246 C-LKPTNMTELFLGNFSTVFICGMIEAVGH---------DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 246 ~-l~~~~l~~~~~~~fD~Ivs~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+ +| |.+++||.+||+..++++.. ..+..||..++.+|++|++.++..
T Consensus 104 ~Glp------frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 104 EGLP------FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred CCCC------CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 3 34 77899999999887765543 235578999999999999977765
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.17 E-value=1.7e-10 Score=102.57 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=98.5
Q ss_pred HHHHHHHcCCC------CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 173 VSVLIEKVKLV------KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 173 ~~~l~~~l~~~------~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
-..++.++... ...++||+|||.|..+..+....-.+|..+|+++..++.|++.+.... ....++... ...+
T Consensus 38 S~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~-gLQ~ 115 (218)
T PF05891_consen 38 SRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCV-GLQD 115 (218)
T ss_dssp HHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES--GGG
T ss_pred HHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEec-CHhh
Confidence 34556655433 346899999999999988766555699999999999999998764411 122466666 6777
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC--CCCCCCCCchhhhhhhccCCCCCC
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD--QCYDEHSLGPGFIKEYIFPSGCLP 324 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~--~~~~~~~~~~~~i~~yi~pgg~lp 324 (381)
..| ..++||+|++.+++.|+.++++..+|++|...|+|||.+++--.. .....+... .++...
T Consensus 116 f~P------~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~---------DsSvTR 180 (218)
T PF05891_consen 116 FTP------EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE---------DSSVTR 180 (218)
T ss_dssp ----------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT---------TTEEEE
T ss_pred ccC------CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc---------cCeeec
Confidence 663 247999999999999999999999999999999999998874321 111111110 111223
Q ss_pred CHHHHHHHHHhcCCcEEEEEE
Q 047022 325 SLRRVTSAMTSSSRLCVEHLE 345 (381)
Q Consensus 325 ~~~~~~~~l~~~~Gf~v~~~~ 345 (381)
+...+ ..+.+++||.++..+
T Consensus 181 s~~~~-~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 181 SDEHF-RELFKQAGLRLVKEE 200 (218)
T ss_dssp EHHHH-HHHHHHCT-EEEEEE
T ss_pred CHHHH-HHHHHHcCCEEEEec
Confidence 34444 555566999998654
No 126
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.17 E-value=1.9e-10 Score=103.28 Aligned_cols=109 Identities=24% Similarity=0.289 Sum_probs=91.4
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~ 255 (381)
.+...+..+|||||.+.|.-++.+|.. + +.+++++|+++++.+.|++++++.|+.++|+... + |..+.-. ..
T Consensus 54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g-dal~~l~----~~ 128 (219)
T COG4122 54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG-DALDVLS----RL 128 (219)
T ss_pred HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC-cHHHHHH----hc
Confidence 334446789999999999999999987 3 5799999999999999999999999998898888 7 7655431 12
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..++||+|+.- ..+.+++.+++.+.++|+|||.+++.
T Consensus 129 ~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 129 LDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 45899999997 45567899999999999999998764
No 127
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.17 E-value=6.8e-11 Score=113.43 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEecCccccCcCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAG---------LQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~g---------l~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
++.+|||+|||-|+-+.-+....-..++|+|++.+.++.|+++..... ..-...+..+ |....... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~-D~f~~~l~--~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAA-DCFSESLR--EK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEES-TTCCSHHH--CT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecc-ccccchhh--hh
Confidence 788999999999998887777544689999999999999999983211 1123566777 65432100 01
Q ss_pred cC--CCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 255 LF--LGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 255 ~~--~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+. ..+||+|-|..++|+.-. +....+++.+.+.|+|||+++.|+|+
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 259999999999998842 34667999999999999999998876
No 128
>PLN02476 O-methyltransferase
Probab=99.17 E-value=2.8e-10 Score=106.11 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=88.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+..+||||||++|..++.+++. .+.+++++|.+++..+.|+++++..|+.++|+++.+ |+.+.-+.-......++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG-LAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHHhcccCCCC
Confidence 35679999999999999999985 356899999999999999999999999999999999 986642110000113689
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+.- ....++..+++.+.++|+|||.+++.
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999997 33457899999999999999998774
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=4.6e-10 Score=97.92 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+++.+.+.++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .+++++..+ |+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~-D~~~~~----- 72 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHG-DALKFD----- 72 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEEC-chhcCC-----
Confidence 46788888888999999999999999999997 78999999999999999988753 247999999 998886
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhc--cccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESL--LAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~--LkpgG~~~i~ 297 (381)
+...+||.|+++--+ |+. ...+..+.+. +.++|.+++.
T Consensus 73 -~~~~~~d~vi~n~Py-~~~----~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 73 -LPKLQPYKVVGNLPY-NIS----TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred -ccccCCCEEEECCCc-ccH----HHHHHHHHhcCCCcceEEEEEE
Confidence 334569999987433 232 3334444332 3466666654
No 130
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=102.83 Aligned_cols=101 Identities=16% Similarity=0.054 Sum_probs=73.7
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEc
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFIC 266 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~ 266 (381)
.++|+|||+|..++-++.+ --+|+++|+|+.|++.|++.....-.....++... +..++. -.+++.|+|+|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~-~~v~L~------g~e~SVDlI~~A 107 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSD-EMVDLL------GGEESVDLITAA 107 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccc-cccccc------CCCcceeeehhh
Confidence 8999999999777777775 55999999999999999886432211111222222 222222 136899999999
Q ss_pred hhhHhhChhcHHHHHHHHHhccccCc-eEEEEc
Q 047022 267 GMIEAVGHDYMEELFSCCESLLAENG-LSCSTV 298 (381)
Q Consensus 267 ~~l~~~~~~~~~~~l~~~~~~LkpgG-~~~i~~ 298 (381)
.++|++ +.+.+++++.++||+.| .+.+-.
T Consensus 108 qa~HWF---dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 108 QAVHWF---DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred hhHHhh---chHHHHHHHHHHcCCCCCEEEEEE
Confidence 999998 57999999999999877 554433
No 131
>PRK00811 spermidine synthase; Provisional
Probab=99.14 E-value=3.4e-10 Score=106.88 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAG--L--QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~g--l--~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+...+||+||||+|..+..++++++ .+|+++|+++++++.|++.+...+ . .++++++.+ |....-. ...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~-Da~~~l~-----~~~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG-DGIKFVA-----ETE 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC-chHHHHh-----hCC
Confidence 4567999999999999999988744 589999999999999999886432 2 358999999 9876531 134
Q ss_pred CcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcC
Q 047022 258 GNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
++||+|++...-.+.+.. ...++++.+.+.|+|||++++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 789999986432211111 237889999999999999887543
No 132
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.14 E-value=6.8e-10 Score=102.47 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=88.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+.......+..+|||||+|.|.++..++++ ++.+++.+|+ |+.++.+++ .++|++..+ |+.+ +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~g-d~f~-~---- 155 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPG-DFFD-P---- 155 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES--TTT-C----
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccc-cHHh-h----
Confidence 45566677777889999999999999999988 8899999999 778888877 369999999 9973 2
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC--ceEEEEc
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN--GLSCSTV 298 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg--G~~~i~~ 298 (381)
++ . +|+|+...++|++++++...+++++++.|+|| |+++|..
T Consensus 156 --~P-~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 156 --LP-V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp --CS-S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred --hc-c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 22 3 99999999999999999999999999999999 9977653
No 133
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=1.8e-10 Score=102.84 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=105.6
Q ss_pred EEEEecCCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|||||||-|.....+.+. ++ ..+.++|.|+..++..+++..... .++...+. |+.... .......+++|.|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~-Dlt~~~--~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVW-DLTSPS--LKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccce-eccchh--ccCCCCcCccceE
Confidence 8999999999999888876 33 789999999999999988765432 45666666 654322 0112466999999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC-CCCCC-Cchhh--hhhhccCCCC---CCCHHHHHHHHHhc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC-YDEHS-LGPGF--IKEYIFPSGC---LPSLRRVTSAMTSS 336 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~-~~~~~-~~~~~--i~~yi~pgg~---lp~~~~~~~~l~~~ 336 (381)
+++.++..++++....+++++.++|||||.+++...... ....+ ....- -+-|+...|. .-+.+++ ..+..+
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL-~~~f~~ 227 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEEL-DELFTK 227 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHH-HHHHHh
Confidence 999999999999999999999999999999888643211 00000 00111 1234444444 2344444 566667
Q ss_pred CCcEEEEEE
Q 047022 337 SRLCVEHLE 345 (381)
Q Consensus 337 ~Gf~v~~~~ 345 (381)
+||..+..+
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999876543
No 134
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.11 E-value=1.2e-09 Score=107.50 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=85.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.++.....+|+++|+|+.+++.|++++..+++. ++++++.+ |+.+.... + ....++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~-D~~~~l~~-~-~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-DVFKLLRT-Y-RDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEc-cHHHHHHH-H-HhcCCCCCE
Confidence 67899999999999998877643348999999999999999999999986 47999999 98764210 0 002358999
Q ss_pred EEEchhhHhhC-------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVG-------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|++.--...-. ...+..+++.+.++|+|||.++.+...
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99862210000 024667778899999999998876543
No 135
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.10 E-value=1.4e-09 Score=109.19 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|++++...++. ++++..+ |+.+...
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~-d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHA-NLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEe-ChHHhhh
Confidence 345567777777788899999999999999999986 689999999999999999999888875 7999999 9865321
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
. + .+..++||+|++. -|.......++.+.+ ++|++.++++..
T Consensus 360 ~-~-~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 D-Q-PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred h-h-hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEEeC
Confidence 0 0 0224679999986 332233455665655 689999888863
No 136
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.10 E-value=1.9e-09 Score=100.02 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||+|||+|.+++.+++. .+.+|+++|+|+.+++.|++++..++ +++..+ |+.+..+. ...++||+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~-D~~~~l~~----~~~~~fDl 156 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEG-DLYDALPT----ALRGRVDI 156 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEe-echhhcch----hcCCCEeE
Confidence 3468999999999999999876 56799999999999999999987754 478888 87653211 11357999
Q ss_pred EEEchh------hHhhCh------------------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 263 VFICGM------IEAVGH------------------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 263 Ivs~~~------l~~~~~------------------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
|+++-- +..+++ +-+..+++.+.++|+|||++++...
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998631 111111 1145778888899999999888764
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.2e-09 Score=102.67 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=80.7
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+|||+|||+|.+++.++.+ +.++|+++|+|+..++.|++++..+++ .++.+..+ |+.+-- .++||+|||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~-dlf~~~--------~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQS-DLFEPL--------RGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee-eccccc--------CCceeEEEe
Confidence 7999999999999999988 456999999999999999999999998 67788887 765432 258999999
Q ss_pred chh-----hHhhC------------------hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 266 CGM-----IEAVG------------------HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 266 ~~~-----l~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+-- ..+.. -+-...++..+.+.|+|||.+++...
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 531 00000 01245778889999999999887653
No 138
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.08 E-value=2.7e-09 Score=97.09 Aligned_cols=142 Identities=14% Similarity=0.057 Sum_probs=94.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
...++||||+|.|..+..++.. -.+|+++++|+.|....+++ | .+++..+|+.+ .+.+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~~w~~---------~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDIDDWQQ---------TDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehhhhhc---------cCCceEEE
Confidence 3568999999999999999885 55899999999997766654 4 33333313332 23689999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEE--EcCCCCCCCCCC-chhhhhhhcc-CCCC-CCCHHHHHHHHHhcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCS--TVPDQCYDEHSL-GPGFIKEYIF-PSGC-LPSLRRVTSAMTSSSR 338 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i--~~~~~~~~~~~~-~~~~i~~yi~-pgg~-lp~~~~~~~~l~~~~G 338 (381)
.|.+++... ..+..+++.+++.|+|+|++++ ..|-..|-+... ...--...+. +|.. --..+.++ .+.+.+|
T Consensus 156 scLNvLDRc--~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G 232 (265)
T PF05219_consen 156 SCLNVLDRC--DRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG 232 (265)
T ss_pred eehhhhhcc--CCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence 999999988 6789999999999999999554 455555443322 1111111111 1111 11133455 3445699
Q ss_pred cEEEEEEe
Q 047022 339 LCVEHLEN 346 (381)
Q Consensus 339 f~v~~~~~ 346 (381)
|+++....
T Consensus 233 F~v~~~tr 240 (265)
T PF05219_consen 233 FEVERWTR 240 (265)
T ss_pred CEEEEEec
Confidence 99987654
No 139
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=1.5e-09 Score=114.74 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=86.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||+|||+|.+++.+++. |+ +|+++|+|+.+++.|++++..+++. ++++++.+ |..+... ...++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~-D~~~~l~-----~~~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA-DCLAWLK-----EAREQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc-cHHHHHH-----HcCCCcC
Confidence 5789999999999999999985 55 6999999999999999999999986 58999999 9865420 0136899
Q ss_pred EEEEch-----------hhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 262 TVFICG-----------MIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 262 ~Ivs~~-----------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+|++.- ..... .++..+++.+.++|+|||.++++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~--~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQ--RDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEEECCCCCCCCCccchhhhHH--HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999842 12222 3567889999999999999887654
No 140
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.08 E-value=1.3e-09 Score=96.74 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-Cc-cccC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NM-TELF 256 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l-~~~~ 256 (381)
.+.++.+|||+|||+|.++..++++. ..+|+++|+|+.+ .. .++++... |..+.... .+ ..+.
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~-d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRG-DFTDEEVLNKIRERVG 95 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEe-eCCChhHHHHHHHHhC
Confidence 35689999999999999999988763 4589999999864 11 35788888 87653200 00 0123
Q ss_pred CCcccEEEEchh--------hHhhC-hhcHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGM--------IEAVG-HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~--------l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++||+|++... +.|.. .+....+++.+.++|+|||++++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 468999998543 22221 1234688999999999999988864
No 141
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.06 E-value=2.8e-10 Score=105.29 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=136.0
Q ss_pred CChhHHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHH
Q 047022 122 NTLTQARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIE 201 (381)
Q Consensus 122 ~~~~~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~ 201 (381)
++..+..+.|++||+...+. .... .+.|.-++ |... .+.+...+-..-.++++.++++|||-|+-++.
T Consensus 67 ~~~~~~~~~Va~HYN~~~e~----g~e~-Rq~S~Ii~------lRnf-NNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlK 134 (389)
T KOG1975|consen 67 EANESKSSEVAEHYNERTEV----GREK-RQRSPIIF------LRNF-NNWIKSVLINLYTKRGDDVLDLGCGKGGDLLK 134 (389)
T ss_pred hhccchhHHHHHHHHHHHHH----hHhh-hccCceee------hhhh-hHHHHHHHHHHHhccccccceeccCCcccHhH
Confidence 34445577899999854443 1111 12222222 1111 22333333333357889999999999999988
Q ss_pred HHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhC--h
Q 047022 202 IVRQTGCKYTGITLSELQLKYAEIKVKEAGLQD-----TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVG--H 274 (381)
Q Consensus 202 la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~-----~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~--~ 274 (381)
.-+..-..++|+||++..++.|+++...-.-.. .+.|+.+ |-.......+-++.+.+||+|-|..++|+.- .
T Consensus 135 w~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~-Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete 213 (389)
T KOG1975|consen 135 WDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA-DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE 213 (389)
T ss_pred hhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe-ccchhHHHHhccCCCCCcceeeeeeeEeeeeccH
Confidence 877533589999999999999999875432111 3678888 6543210000012334599999999888653 2
Q ss_pred hcHHHHHHHHHhccccCceEEEEcCCCCC----------------------CCC----CCchhhhhhhccCC-C------
Q 047022 275 DYMEELFSCCESLLAENGLSCSTVPDQCY----------------------DEH----SLGPGFIKEYIFPS-G------ 321 (381)
Q Consensus 275 ~~~~~~l~~~~~~LkpgG~~~i~~~~~~~----------------------~~~----~~~~~~i~~yi~pg-g------ 321 (381)
+....+++++.++|+|||+++-|+|+... ... .....|-.+|.|.= +
T Consensus 214 e~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPE 293 (389)
T KOG1975|consen 214 ESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPE 293 (389)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcc
Confidence 45678899999999999999999987321 000 00112223333310 0
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEEEecchhHHHHHHHH
Q 047022 322 CLPSLRRVTSAMTSSSRLCVEHLENIETHYYQKLRRW 358 (381)
Q Consensus 322 ~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~~tl~~W 358 (381)
++... ..+..++++.|++++.+..+-.-|..-+..|
T Consensus 294 ylV~F-~~l~~lae~y~LeLv~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 294 YLVPF-PTLVSLAEEYGLELVFVKPFADFYEEELKKN 329 (389)
T ss_pred eeeeh-HHHHHHHHhcCcEEEEeccHHHHHHHhcccc
Confidence 11112 3346677789999999988877777666666
No 142
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=2.1e-09 Score=103.23 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=82.9
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+.+.+...++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++++...++ +++++..+ |+.+...
T Consensus 163 ~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~-D~~~~~~---- 235 (315)
T PRK03522 163 ATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQAL-DSTQFAT---- 235 (315)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEc-CHHHHHH----
Confidence 33444444335689999999999999999985 78999999999999999999999888 48999999 9977541
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...++||+|++. -|......-+.+....++|++.++++...
T Consensus 236 -~~~~~~D~Vv~d-----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 236 -AQGEVPDLVLVN-----PPRRGIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred -hcCCCCeEEEEC-----CCCCCccHHHHHHHHHcCCCeEEEEECCc
Confidence 123579999987 22222222222333446788777777543
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.04 E-value=4.5e-09 Score=100.86 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHH--HH---HcCC-CCCeEEEEecCccccCcCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIK--VK---EAGL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~--~~---~~gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....+||+||||.|..+..++++. ..+|+++|+++++++.|++. +. ...+ .++++++.+ |..+.-.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~----- 221 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLS----- 221 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHH-----
Confidence 3445699999999999999888863 36999999999999999962 11 1122 358999999 9887431
Q ss_pred cCCCcccEEEEchhh---HhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 255 LFLGNFSTVFICGMI---EAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l---~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...++||+|++...- .....-.-.++++.+.+.|+|||++++..
T Consensus 222 ~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 222 SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 134689999987311 01111233679999999999999987764
No 144
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=2e-09 Score=99.13 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.+..+++.. +..+|||||++.|.-++.+++. .+++++++|.+++..+.|++.+...|+.++|+++.+ ++.+.-
T Consensus 69 ~lL~~l~~~~---~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G-~a~e~L 144 (247)
T PLN02589 69 QFLNMLLKLI---NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG-PALPVL 144 (247)
T ss_pred HHHHHHHHHh---CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec-cHHHHH
Confidence 4444445444 4569999999999999999876 467999999999999999999999999999999999 886642
Q ss_pred cCCccc-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 249 PTNMTE-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~~l~~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+..... ...++||+|+.-. ...++..+++.+.++|+|||.+++.
T Consensus 145 ~~l~~~~~~~~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHhccccCCcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 110000 0126899999973 3456889999999999999997763
No 145
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.02 E-value=3.7e-09 Score=99.23 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=82.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+.+.+||+||||+|..+..++++. ..+++++|+++++++.+++.+...+ + ..++++..+ |..+.-. ...
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~-D~~~~l~-----~~~ 143 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQID-DGFKFLA-----DTE 143 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEEC-chHHHHH-----hCC
Confidence 3445699999999999999988864 4689999999999999999875432 1 247888888 8765320 123
Q ss_pred CcccEEEEchhhHhhChhc--HHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGMIEAVGHDY--MEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~--~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
++||+|++......-+..+ ..++++.+.+.|+|||.+++....
T Consensus 144 ~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 144 NTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 7899999865422111112 468899999999999998876443
No 146
>PRK03612 spermidine synthase; Provisional
Probab=99.01 E-value=1.9e-09 Score=110.06 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=83.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHH--HHHc---CC-CCCeEEEEecCccccCcCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIK--VKEA---GL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~--~~~~---gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++..+|||||||+|..+..++++++ .+++++|+++++++.++++ +... .+ .++++++.+ |.++.-.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~----- 368 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLR----- 368 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHH-----
Confidence 35567999999999999999998754 6999999999999999983 2221 12 248999999 9887431
Q ss_pred cCCCcccEEEEchhhHhhC---hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGMIEAVG---HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...++||+|++...-...+ .-...++++.+.+.|||||.+++...
T Consensus 369 ~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 369 KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 1247899999974322211 01235789999999999999888653
No 147
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.99 E-value=1e-08 Score=97.27 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=94.7
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.++....+++|..|||--||||++++.+.. .|++++|+|++..|++-|+.++...++.+-.....+ |++.++
T Consensus 188 ~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~-Da~~lp------ 259 (347)
T COG1041 188 AMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL-DATNLP------ 259 (347)
T ss_pred HHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEec-ccccCC------
Confidence 456667788999999999999999999887 599999999999999999999999887654455666 898888
Q ss_pred cCCCcccEEEEchh------hHhhC-hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 255 LFLGNFSTVFICGM------IEAVG-HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~------l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+...++|.|++--- ..-.. ++-+..+++.+.++||+||++++..|
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 56667999998321 11000 12377899999999999999998876
No 148
>PLN02366 spermidine synthase
Probab=98.98 E-value=2.6e-09 Score=101.59 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=83.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
.+...+||+||||.|..+.+++++++ .+|+.+|+++.+++.|++.+... ++ .++++++.+ |....-.+ ...
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~-Da~~~l~~----~~~ 163 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIG-DGVEFLKN----APE 163 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEC-hHHHHHhh----ccC
Confidence 35668999999999999999998754 58999999999999999987643 23 348999999 97654210 124
Q ss_pred CcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++||+|++...-.+.+.. ....+++.+.++|+|||++++..
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 689999986432221111 24678999999999999987643
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.97 E-value=1.9e-09 Score=96.14 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..+||||||.|.++..+|+. ++..++|+|++...+..+.+++...++. |+.+..+ |+..+-.. -++++++|.|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~-da~~~l~~---~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRG-DARELLRR---LFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES--CTTHHHH---HSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEc-cHHHHHhh---cccCCchheEE
Confidence 38999999999999999988 8899999999999999999999998885 9999999 98773211 12458999999
Q ss_pred EchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 265 ICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 265 s~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
...-=.+.-.. --+.+++.+.++|+|||.+.+.+....
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 98543332211 135799999999999999988876544
No 150
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.95 E-value=1.9e-08 Score=100.73 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+.+.+.+.++.+|||+|||+|.+++.+++. ..+|+++|+++.+++.|++++..+++. ++++..+ |+.+..+
T Consensus 278 ~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~-d~~~~l~ 354 (431)
T TIGR00479 278 EKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAG-TLETVLP 354 (431)
T ss_pred HHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeC-CHHHHHH
Confidence 344556666777778899999999999999999985 679999999999999999999988874 8999999 9876321
Q ss_pred CCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. + .+..++||+|+.. -|... ...+++.+.+ ++|++.++++.
T Consensus 355 ~-~-~~~~~~~D~vi~d-----PPr~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 K-Q-PWAGQIPDVLLLD-----PPRKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred H-H-HhcCCCCCEEEEC-----cCCCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 0 0 0123579999975 22112 3556665554 88988877764
No 151
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.95 E-value=2.6e-09 Score=106.56 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=77.7
Q ss_pred CCEEEEecCCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQT-----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+..|||+|||+|.++..+++.. ..+|++|+.|+......++++..+++.++|+++.+ |.++.. ...+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~-d~r~v~-------lpek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG-DMREVE-------LPEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES--TTTSC-------HSS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC-cccCCC-------CCCc
Confidence 5689999999999998777641 25999999999988888888888899999999999 999987 3368
Q ss_pred ccEEEEchhhHhhC-hhcHHHHHHHHHhccccCceE
Q 047022 260 FSTVFICGMIEAVG-HDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 260 fD~Ivs~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+|+|||-.+= .++ .+-.++.+....+.|||||..
T Consensus 259 vDIIVSElLG-sfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 259 VDIIVSELLG-SFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp EEEEEE---B-TTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred eeEEEEeccC-CccccccCHHHHHHHHhhcCCCCEE
Confidence 9999995443 233 244677888999999999983
No 152
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.94 E-value=5.2e-09 Score=98.69 Aligned_cols=106 Identities=24% Similarity=0.299 Sum_probs=86.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+-.+..|||+|||+|.+++..|+....+|+++|.|. +.+.|++.+..+++.+.|++..+ .++++. ++..+.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~g-kvEdi~------LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKG-KVEDIE------LPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeec-ceEEEe------cCcccee
Confidence 457899999999999999999997435899999986 45999999999999989999999 998885 4568999
Q ss_pred EEEEchhhHhhChhc-HHHHHHHHHhccccCceEE
Q 047022 262 TVFICGMIEAVGHDY-MEELFSCCESLLAENGLSC 295 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~ 295 (381)
+|+|-+|=..+--+. +..++-.=.+.|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999988765553222 4555656678999999943
No 153
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.94 E-value=1.5e-08 Score=90.43 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=80.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.++.+|||+|||+|.+++.++.+...+|+++|+++..++.++++++..++. ++++..+ |+.+..+ ...++||+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~-D~~~~l~-----~~~~~fDl 124 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNT-NALSFLA-----QPGTPHNV 124 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEc-hHHHHHh-----hcCCCceE
Confidence 467899999999999999765544569999999999999999999988875 7999999 9865321 12356999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHh--ccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCES--LLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~--~LkpgG~~~i~~~~ 300 (381)
|++.--+.. .-....++.+.. +|+|+|.+++..+.
T Consensus 125 V~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 125 VFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 999744211 123455555554 37899998887654
No 154
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.92 E-value=3.9e-09 Score=93.71 Aligned_cols=144 Identities=20% Similarity=0.230 Sum_probs=100.8
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGL-QDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl-~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+....++.|.+|||.+.|-|..++..+++ |+ +|..++.+++.++.|.-+-=..++ ..+|+++.+ |..+.-. .
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilG-D~~e~V~----~ 200 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILG-DAYEVVK----D 200 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecc-cHHHHHh----c
Confidence 44555677999999999999999999997 77 999999999999888755322222 235899999 9877642 3
Q ss_pred cCCCcccEEEEch-hhHhhChhcHHHHHHHHHhccccCceEEEEc--CCCCCCCCCCchhhhhhhccCCCCCCCHHHHHH
Q 047022 255 LFLGNFSTVFICG-MIEAVGHDYMEELFSCCESLLAENGLSCSTV--PDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTS 331 (381)
Q Consensus 255 ~~~~~fD~Ivs~~-~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~--~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~ 331 (381)
+.+.+||+|+-.- -|.+.+.-+-.++.++++|+|||||.++.-+ |..+|... .+ ...+.+
T Consensus 201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~---------------d~--~~gVa~ 263 (287)
T COG2521 201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL---------------DL--PKGVAE 263 (287)
T ss_pred CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC---------------Ch--hHHHHH
Confidence 6788999998632 2223333356889999999999999966544 33333211 11 233445
Q ss_pred HHHhcCCcEEEEE
Q 047022 332 AMTSSSRLCVEHL 344 (381)
Q Consensus 332 ~l~~~~Gf~v~~~ 344 (381)
.+. +.||++++.
T Consensus 264 RLr-~vGF~~v~~ 275 (287)
T COG2521 264 RLR-RVGFEVVKK 275 (287)
T ss_pred HHH-hcCceeeee
Confidence 555 489997654
No 155
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.92 E-value=1.5e-08 Score=88.76 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
..++.+|||+|||+|..++.++.. ...+|+.+|.++ .++.++.++..++ ...++.+... |+.+..... .....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L-~Wg~~~~~~--~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL-DWGDELDSD--LLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHH--HHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEE-EecCccccc--ccccc
Confidence 457889999999999999999986 577999999999 8999999998876 5568899888 886521000 12346
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+||+|++..++..- +..+.+++.+.++|+|+|.++++.+.+
T Consensus 119 ~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 119 SFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 89999999998875 678999999999999999987776544
No 156
>PLN02672 methionine S-methyltransferase
Probab=98.91 E-value=3e-08 Score=107.36 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=83.1
Q ss_pred CCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCC---------------CCCeEEEEecCccccC
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGL---------------QDTSDYIFVITVNCLK 248 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl---------------~~~i~~~~~~d~~~l~ 248 (381)
+.+|||+|||+|.+++.++++ +..+|+++|+|+++++.|++++..+++ .++++++.+ |+.+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~s-Dl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYES-DLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEEC-chhhhc
Confidence 468999999999999999987 457999999999999999999987643 247999999 986643
Q ss_pred cCCccccCCCcccEEEEchh--------------hHhhC-------------------h---hcHHHHHHHHHhccccCc
Q 047022 249 PTNMTELFLGNFSTVFICGM--------------IEAVG-------------------H---DYMEELFSCCESLLAENG 292 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~--------------l~~~~-------------------~---~~~~~~l~~~~~~LkpgG 292 (381)
. ....+||+|||+-- .+|-| . .-+..++.++.++|+|||
T Consensus 198 ~-----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG 272 (1082)
T PLN02672 198 R-----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMG 272 (1082)
T ss_pred c-----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCC
Confidence 1 01136999999531 11100 0 113567888889999999
Q ss_pred eEEEEcCC
Q 047022 293 LSCSTVPD 300 (381)
Q Consensus 293 ~~~i~~~~ 300 (381)
.+++.+..
T Consensus 273 ~l~lEiG~ 280 (1082)
T PLN02672 273 IMIFNMGG 280 (1082)
T ss_pred EEEEEECc
Confidence 99987754
No 157
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.90 E-value=3.5e-09 Score=102.43 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=125.0
Q ss_pred HHHHhhhhhcCCCcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh
Q 047022 126 QARRHVSRLYDPSNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ 205 (381)
Q Consensus 126 ~~~~~i~~~Yd~~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~ 205 (381)
...+.+.+.|+...++ |...+...+++ +-+ .+....++...+.-....-.....++..++|+|||-|....+++..
T Consensus 56 ~~~e~~~~~y~~~~dl-~~~~w~~~~h~--~~~-~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f 131 (364)
T KOG1269|consen 56 DLPEQIAKYYNNSTDL-YERNWGQSFHF--GRI-PEGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVF 131 (364)
T ss_pred ccchHHHHHhcccchh-hhhhhccchhc--cCc-cchhHHHHHHHhhcchHHHhhcCcccccccccCcCcCchhHHHHHh
Confidence 5566788899999899 88888877654 333 2222333332222222233344578889999999999999999987
Q ss_pred cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHH
Q 047022 206 TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCE 285 (381)
Q Consensus 206 ~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~ 285 (381)
.++.++|+|.++.++..+.......++..+..+..+ |+.+.+ ++++.||.+-+..+.+|.+ +...+++++.
T Consensus 132 ~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~-~~~~~~------fedn~fd~v~~ld~~~~~~--~~~~~y~Ei~ 202 (364)
T KOG1269|consen 132 KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVA-DFGKMP------FEDNTFDGVRFLEVVCHAP--DLEKVYAEIY 202 (364)
T ss_pred ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehh-hhhcCC------CCccccCcEEEEeecccCC--cHHHHHHHHh
Confidence 778999999999999999998888888877788778 998887 6789999999999999995 5899999999
Q ss_pred hccccCceEEE
Q 047022 286 SLLAENGLSCS 296 (381)
Q Consensus 286 ~~LkpgG~~~i 296 (381)
++++|||+.+.
T Consensus 203 rv~kpGG~~i~ 213 (364)
T KOG1269|consen 203 RVLKPGGLFIV 213 (364)
T ss_pred cccCCCceEEe
Confidence 99999999665
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.90 E-value=1e-08 Score=97.09 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...++.+++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+ |+.+.+
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~-Dal~~~- 98 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG-DALKTE- 98 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-CHhhhc-
Confidence 355668888888889999999999999999999985 77999999999999999999887765678999999 997765
Q ss_pred CCccccCCCcccEEEEc
Q 047022 250 TNMTELFLGNFSTVFIC 266 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~ 266 (381)
...||+|+++
T Consensus 99 -------~~~~d~VvaN 108 (294)
T PTZ00338 99 -------FPYFDVCVAN 108 (294)
T ss_pred -------ccccCEEEec
Confidence 1468999885
No 159
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.90 E-value=3.3e-08 Score=87.05 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=85.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCK---------YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~---------v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
.++.....+++..|||--||+|++.++.+.. .+.. +.|.|+++.+++.|++++...++.+.+.+... |+
T Consensus 19 ~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~-D~ 97 (179)
T PF01170_consen 19 ALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW-DA 97 (179)
T ss_dssp HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---G
T ss_pred HHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec-ch
Confidence 5667777889999999999999999998775 3444 88999999999999999999999889999999 99
Q ss_pred cccCcCCccccCCCcccEEEEchhhHh-hC-----hhcHHHHHHHHHhccccCceEEEEcC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEA-VG-----HDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~-~~-----~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+++ +..+++|.|+++--... ++ .+-+..+++++.++|++ ..++++..
T Consensus 98 ~~l~------~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 98 RELP------LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp GGGG------GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred hhcc------cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 9987 45689999999642110 11 12356788999999999 44444443
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.89 E-value=1.3e-08 Score=90.52 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=74.4
Q ss_pred HHHHcCCCCCCEEEEecCCchH----HHHHHHHh----c--CCEEEEEcCCHHHHHHHHHHH--------------HH--
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQ----T--GCKYTGITLSELQLKYAEIKV--------------KE-- 229 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~----~--~~~v~gvDis~~~~~~a~~~~--------------~~-- 229 (381)
+++.....+.-+|+..||++|. +++.+.+. . ..+++|+|+|+.+++.|++-. ..
T Consensus 23 ~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf 102 (196)
T PF01739_consen 23 LLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYF 102 (196)
T ss_dssp -----CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHE
T ss_pred hccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhc
Confidence 3333333355799999999994 44444441 1 358999999999999998611 00
Q ss_pred ---cC--------CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 230 ---AG--------LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 230 ---~g--------l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.+ +..+|+|... |..+.+ ...+.||+|+|.+++-++..+....+++.+++.|+|||.+++..
T Consensus 103 ~~~~~~~~~v~~~lr~~V~F~~~-NL~~~~------~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 103 TERDGGGYRVKPELRKMVRFRRH-NLLDPD------PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp EEE-CCCTTE-HHHHTTEEEEE---TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred cccCCCceeEChHHcCceEEEec-ccCCCC------cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 00 1257899999 888822 14589999999999999988888999999999999999999875
Q ss_pred C
Q 047022 299 P 299 (381)
Q Consensus 299 ~ 299 (381)
.
T Consensus 176 s 176 (196)
T PF01739_consen 176 S 176 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 161
>PHA03412 putative methyltransferase; Provisional
Probab=98.87 E-value=1.3e-08 Score=92.15 Aligned_cols=96 Identities=13% Similarity=0.192 Sum_probs=73.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
.+.+|||+|||+|.+++.++++ ...+|+++|+++.+++.|+++.. ++.+... |+...+ ..++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~-D~~~~~-------~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA-DALTTE-------FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc-chhccc-------ccCC
Confidence 3679999999999999999875 24689999999999999997742 5889999 987654 2468
Q ss_pred ccEEEEchhhHhh----------ChhcHHHHHHHHHhccccCce
Q 047022 260 FSTVFICGMIEAV----------GHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 260 fD~Ivs~~~l~~~----------~~~~~~~~l~~~~~~LkpgG~ 293 (381)
||+||++--+.-. +..-...+++.+.++++||+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999996533211 111245688888887777775
No 162
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=3.6e-09 Score=93.62 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 169 QIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 169 q~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..+..+++.+.-. ....++|||||-|.+..++..+.-.+++-+|.|-.|++.++..- ..++ .+...++ |-+.++
T Consensus 59 g~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~-DEE~Ld 132 (325)
T KOG2940|consen 59 GDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVG-DEEFLD 132 (325)
T ss_pred HHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEec-chhccc
Confidence 3455555554433 34589999999999999998763347999999999999887642 1222 3566778 888887
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCC-CCCCCchhhhhhhccCCCCCCCHH
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCY-DEHSLGPGFIKEYIFPSGCLPSLR 327 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~-~~~~~~~~~i~~yi~pgg~lp~~~ 327 (381)
+.++++|+|+++..+|++ .+++..+.+|+..|||+|.++-+...... .+.+- .-.+...-.-||.-|.++
T Consensus 133 ------f~ens~DLiisSlslHW~--NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~-slqLAelER~GGiSphiS 203 (325)
T KOG2940|consen 133 ------FKENSVDLIISSLSLHWT--NDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRC-SLQLAELEREGGISPHIS 203 (325)
T ss_pred ------ccccchhhhhhhhhhhhh--ccCchHHHHHHHhcCCCccchhHHhccccHHHHHH-HhhHHHHHhccCCCCCcC
Confidence 788999999999999999 56899999999999999997765433221 11111 111111122345444433
Q ss_pred HH-----HHHHHhcCCcEEE--EEEecchhHHH
Q 047022 328 RV-----TSAMTSSSRLCVE--HLENIETHYYQ 353 (381)
Q Consensus 328 ~~-----~~~l~~~~Gf~v~--~~~~~~~~y~~ 353 (381)
-+ +..+...+||... +...+...|..
T Consensus 204 Pf~qvrDiG~LL~rAGF~m~tvDtDEi~v~Yp~ 236 (325)
T KOG2940|consen 204 PFTQVRDIGNLLTRAGFSMLTVDTDEIVVGYPR 236 (325)
T ss_pred hhhhhhhhhhHHhhcCcccceecccceeecCch
Confidence 22 1334456899764 45555555544
No 163
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.86 E-value=1.1e-07 Score=87.64 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
..-+||||.||.|...+.+... +. ..|...|.|+..++..++.+++.|+.+-++|..+ |+.+.. ++.. .....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~-dAfd~~--~l~~-l~p~P 210 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQG-DAFDRD--SLAA-LDPAP 210 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEec-CCCCHh--Hhhc-cCCCC
Confidence 4569999999999998888776 33 5899999999999999999999999977799999 987643 1111 13567
Q ss_pred cEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccC--CC-----CCCCHHHHHHH
Q 047022 261 STVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFP--SG-----CLPSLRRVTSA 332 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~p--gg-----~lp~~~~~~~~ 332 (381)
++++.++.+|.+++.+ ....++.+.+++.|||+++.|..++. +...+|.+-+.. +| ...+..|+ ..
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH-----PQle~IAr~LtsHr~g~~WvMRrRsq~Em-D~ 284 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH-----PQLEMIARVLTSHRDGKAWVMRRRSQAEM-DQ 284 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC-----cchHHHHHHHhcccCCCceEEEecCHHHH-HH
Confidence 9999999999998765 45579999999999999888764322 233333332221 11 12456666 56
Q ss_pred HHhcCCcEEEE
Q 047022 333 MTSSSRLCVEH 343 (381)
Q Consensus 333 l~~~~Gf~v~~ 343 (381)
+.+.+||+-.+
T Consensus 285 Lv~~aGF~K~~ 295 (311)
T PF12147_consen 285 LVEAAGFEKID 295 (311)
T ss_pred HHHHcCCchhh
Confidence 66679998543
No 164
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.86 E-value=2e-08 Score=93.51 Aligned_cols=178 Identities=19% Similarity=0.118 Sum_probs=113.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
-.+..|||+|||+|.++..+++....+|.+++.| +|.++|++.++.+.+.++|.++.+ .++++. .+++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~G-KiEdie-------LPEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPG-KIEDIE-------LPEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccC-cccccc-------CchhccE
Confidence 4678999999999999999998634589999987 689999999999999999999999 998876 3488999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCch---------hhhhhhccCCCCCCCHHHHHHHH
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGP---------GFIKEYIFPSGCLPSLRRVTSAM 333 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~---------~~i~~yi~pgg~lp~~~~~~~~l 333 (381)
||+--|-.-+-.+..-+..-..++.|||+|..+=++.+-...++.... .|..+--|-|-.+.++. ..+.
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~--g~a~ 324 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLY--GSAH 324 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhh--hhhh
Confidence 999554333322223333345669999999977655442222222211 12111123333333321 0111
Q ss_pred HhcCCcEEEEEEecchhHHHHHHHHHHHHHHhHHHHHh
Q 047022 334 TSSSRLCVEHLENIETHYYQKLRRWRQKFREKHSEILA 371 (381)
Q Consensus 334 ~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f~~~~~~~~~ 371 (381)
.+-..=-+++.-+++.-.+.++.+-..-++...+.+..
T Consensus 325 ~eYFrQPvVDtFD~RilmA~sv~h~~dF~~~kEedlh~ 362 (517)
T KOG1500|consen 325 QEYFRQPVVDTFDIRILMAKSVFHVIDFLNMKEEDLHE 362 (517)
T ss_pred hhhhccccccccccceeeccchHhhhhhhhcccchhee
Confidence 11011135666666666677777766666555544443
No 165
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.85 E-value=1.3e-08 Score=89.65 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCC-CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVK-GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~-~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+-++.+++.+.-.| +..|-|+|||.+.++..+. .+.+|...|+-.. +-.+..+ |...+|
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~----------------n~~Vtac-dia~vP- 117 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP----------------NPRVTAC-DIANVP- 117 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S----------------STTEEES--TTS-S-
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC----------------CCCEEEe-cCccCc-
Confidence 44677788776544 5689999999999986553 2568999998642 2346678 999998
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHH
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRV 329 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~ 329 (381)
+++++.|++|.+.++.- .|+..+++++.|+|||||.+.|.--..++ .....+
T Consensus 118 -----L~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf--------------------~~~~~F 169 (219)
T PF05148_consen 118 -----LEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSRF--------------------ENVKQF 169 (219)
T ss_dssp -------TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------------S-HHHH
T ss_pred -----CCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecccC--------------------cCHHHH
Confidence 67899999999877644 48999999999999999998886433222 245666
Q ss_pred HHHHHhcCCcEEEEEEe
Q 047022 330 TSAMTSSSRLCVEHLEN 346 (381)
Q Consensus 330 ~~~l~~~~Gf~v~~~~~ 346 (381)
++.+. ..||.+...+.
T Consensus 170 ~~~~~-~~GF~~~~~d~ 185 (219)
T PF05148_consen 170 IKALK-KLGFKLKSKDE 185 (219)
T ss_dssp HHHHH-CTTEEEEEEE-
T ss_pred HHHHH-HCCCeEEeccc
Confidence 67666 58999887554
No 166
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=5.1e-08 Score=88.67 Aligned_cols=117 Identities=15% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
...+..+||+|||+|..++.++.. +.++++++|.|+..+..|.+++...++.+++.++.- +.+.-..... ....+++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~-~me~d~~~~~-~l~~~~~ 223 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN-IMESDASDEH-PLLEGKI 223 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec-cccccccccc-ccccCce
Confidence 345568999999999999999887 678999999999999999999999999999988854 4332110000 1345899
Q ss_pred cEEEEchhh------HhhC------------------hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMI------EAVG------------------HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l------~~~~------------------~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+++|+--. ..+. .+.+..++.-+.|.|+|||.+.+....
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 999996311 0000 012345777788999999998887653
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.84 E-value=2e-08 Score=93.60 Aligned_cols=86 Identities=23% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+.++.+++.+.+.++++|||||||+|.++..++++ +.+++++|+++.+++.+++++.. .+++++..+ |+.+++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~-D~~~~~- 88 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEG-DALKVD- 88 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEe-ccccCC-
Confidence 455668888888889999999999999999999997 77999999999999999988754 248999999 998876
Q ss_pred CCccccCCCcccEEEEchh
Q 047022 250 TNMTELFLGNFSTVFICGM 268 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~ 268 (381)
+ ..||.|+++-.
T Consensus 89 -----~--~~~d~Vv~NlP 100 (258)
T PRK14896 89 -----L--PEFNKVVSNLP 100 (258)
T ss_pred -----c--hhceEEEEcCC
Confidence 2 35899998743
No 168
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.82 E-value=3.9e-08 Score=96.55 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=83.5
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
..+.+.+...++.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|+++++.+++. ++++..+ |+.+....
T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~-d~~~~~~~--- 296 (374)
T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAAL-DSAKFATA--- 296 (374)
T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC-CHHHHHHh---
Confidence 34444444345679999999999999999975 789999999999999999999998885 8999999 98764310
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..++||+|+..---..+ ...+++.+. .++|++.++++.
T Consensus 297 --~~~~~D~vi~DPPr~G~----~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 297 --QMSAPELVLVNPPRRGI----GKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred --cCCCCCEEEECCCCCCC----cHHHHHHHH-hcCCCeEEEEEe
Confidence 12469999987221111 244555554 479999888875
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=1.3e-08 Score=92.49 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=91.6
Q ss_pred CEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..+||||||.|.+...+|++ +...++|||+....+..|.+++.+.++. |+.+... |+..+-.. -+++++.|.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~-DA~~~l~~---~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCG-DAVEVLDY---LIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcC-CHHHHHHh---cCCCCCeeEEE
Confidence 48999999999999999998 8889999999999999999999999986 8999999 98776321 02345999999
Q ss_pred EchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCCCCC
Q 047022 265 ICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQCYDE 305 (381)
Q Consensus 265 s~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~ 305 (381)
.++.=.|--.+ -.+.+++.+.++|+|||.+.+.+....|..
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e 171 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFE 171 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHH
Confidence 98432222111 245899999999999999988887655543
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.79 E-value=2.2e-08 Score=94.09 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+.+.++.+|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. ++++++.+ |+.+++.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~-D~~~~~~- 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEG-DALKVDL- 101 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEC-hhhcCCH-
Confidence 34567888888889999999999999999999997 56999999999999999887642 47999999 9988762
Q ss_pred CccccCCCcccEEEEc
Q 047022 251 NMTELFLGNFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~ 266 (381)
..-.+|.|+++
T Consensus 102 -----~~~~~~~vv~N 112 (272)
T PRK00274 102 -----SELQPLKVVAN 112 (272)
T ss_pred -----HHcCcceEEEe
Confidence 11115888887
No 171
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.79 E-value=3.5e-08 Score=88.95 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCCC-CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKG-QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~-~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+...|+ ..|-|+|||-+.++. .--..|+..|+-.. +-++..+ |++++|
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~----------------~~~V~~c-Dm~~vP--- 223 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV----------------NERVIAC-DMRNVP--- 223 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC----------------CCceeec-cccCCc---
Confidence 5778888876654 578899999988765 22457999998542 4567788 999988
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHH
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTS 331 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~ 331 (381)
+++++.|++|++.++. + .|+..+++++.|+|+|||.++|.--..+ +++...+.+
T Consensus 224 ---l~d~svDvaV~CLSLM--g-tn~~df~kEa~RiLk~gG~l~IAEv~SR--------------------f~dv~~f~r 277 (325)
T KOG3045|consen 224 ---LEDESVDVAVFCLSLM--G-TNLADFIKEANRILKPGGLLYIAEVKSR--------------------FSDVKGFVR 277 (325)
T ss_pred ---CccCcccEEEeeHhhh--c-ccHHHHHHHHHHHhccCceEEEEehhhh--------------------cccHHHHHH
Confidence 6789999999886664 3 5899999999999999999998753322 244555666
Q ss_pred HHHhcCCcEEEEEEe
Q 047022 332 AMTSSSRLCVEHLEN 346 (381)
Q Consensus 332 ~l~~~~Gf~v~~~~~ 346 (381)
++.. .||.+.+...
T Consensus 278 ~l~~-lGF~~~~~d~ 291 (325)
T KOG3045|consen 278 ALTK-LGFDVKHKDV 291 (325)
T ss_pred HHHH-cCCeeeehhh
Confidence 6664 8998876543
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=1.7e-08 Score=90.17 Aligned_cols=113 Identities=17% Similarity=0.305 Sum_probs=78.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcC-------------------------------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAG------------------------------- 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~g------------------------------- 231 (381)
.+..+|||||..|.++..+|+..++ .|.|+||++..+..|+++++...
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4578999999999999999999665 69999999999999999764210
Q ss_pred ---CCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh--Hhh--ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 232 ---LQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI--EAV--GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 232 ---l~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l--~~~--~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+++++.|... ++.-...+-+ .+....||+|+|..+- -|+ +++.+..+|+++.++|.|||++++.-
T Consensus 138 t~~~p~n~~f~~~-n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKE-NYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccCCcchhcccc-cEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 1112222222 2111110000 1234789999985532 233 45678999999999999999998864
No 173
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.78 E-value=1.7e-08 Score=89.91 Aligned_cols=99 Identities=18% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
++++++|||+.||.|.+++.+|+. .+..|+++|++|..++.+++++..+++.+++....+ |.+++. ..+.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~-D~~~~~-------~~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVING-DAREFL-------PEGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES--GGG----------TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcC-CHHHhc-------Ccccc
Confidence 568999999999999999999984 467899999999999999999999999999999999 999887 35889
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
|.|+.. .|. ....++..+.+++++||.+
T Consensus 171 drvim~-----lp~-~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 171 DRVIMN-----LPE-SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEE-------TS-SGGGGHHHHHHHEEEEEEE
T ss_pred CEEEEC-----ChH-HHHHHHHHHHHHhcCCcEE
Confidence 999997 332 2346788899999999874
No 174
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=6.4e-08 Score=83.84 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=65.6
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
....-.|.+|+|+|||+|.+++.++-. | .+|+|+|+++++++.+++++.+ +.+++.|..+ |.++..
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~-dv~~~~--------- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEE--LLGDVEFVVA-DVSDFR--------- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEc-chhhcC---------
Confidence 333446789999999999999998874 6 6899999999999999999987 4468999999 999887
Q ss_pred CcccEEEEchhh
Q 047022 258 GNFSTVFICGMI 269 (381)
Q Consensus 258 ~~fD~Ivs~~~l 269 (381)
+.+|.++.+--+
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 789988876433
No 175
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=7.1e-08 Score=85.98 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++.+ ..+++||||.=+|.-++..|.. .+.+|+++|++++..+.+.+..+.+|+..+|+++++ +..+.-.+.
T Consensus 66 ~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l 141 (237)
T KOG1663|consen 66 QMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDEL 141 (237)
T ss_pred HHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHH
Confidence 3444444 4679999999999998888877 578999999999999999999999999999999999 765432222
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++....++||.++.- -...++..+++++.+++|+||++++.
T Consensus 142 ~~~~~~~tfDfaFvD-----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 142 LADGESGTFDFAFVD-----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HhcCCCCceeEEEEc-----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 233456899999986 33346679999999999999998874
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.74 E-value=1.6e-07 Score=89.56 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+|||||||+|.+...++.+ ++.+++|+|+++..++.|++++..+ ++.++|++....|...+... + ....+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-i-~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-I-IHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-c-cccCCceE
Confidence 5689999999999888777665 7889999999999999999999999 79889988653133222100 0 01246899
Q ss_pred EEEEchhhH
Q 047022 262 TVFICGMIE 270 (381)
Q Consensus 262 ~Ivs~~~l~ 270 (381)
+|+|+--++
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999985443
No 177
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.72 E-value=3.4e-08 Score=92.81 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=82.5
Q ss_pred CCEEEEecCCchH----HHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHH------------------HH--------
Q 047022 185 GQEVLEIGCGWGT----LAIEIVRQT-----GCKYTGITLSELQLKYAEIKV------------------KE-------- 229 (381)
Q Consensus 185 ~~~VLDiGcG~G~----~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~------------------~~-------- 229 (381)
.-+|+..||++|. +++.+.+.. ..+|+|+|+|+..++.|++-. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3799999999993 444444421 368999999999999998741 00
Q ss_pred ----cCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 230 ----AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 230 ----~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+...|+|... |..+.+. ...+.||+|+|.+++.|+.++....+++++.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~-NL~~~~~-----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQL-NLLAKQW-----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcc-cCCCCCC-----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 012356788888 8876431 12478999999999999988889999999999999999987764
No 178
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.72 E-value=1.8e-07 Score=91.26 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=89.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.|++||++-|=||+++.++|.. |+ +|++||+|...++.|++++.-+|+. +++.++++ |+.+.-... .-...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~-Dvf~~l~~~--~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVG-DVFKWLRKA--ERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehh-hHHHHHHHH--HhcCCccc
Confidence 3899999999999999999985 87 9999999999999999999999985 46899999 986652110 01235899
Q ss_pred EEEEch--------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 262 TVFICG--------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 262 ~Ivs~~--------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
+|+.-- +..-+ .+++..++..+.++|+|||.+++++....
T Consensus 293 lIilDPPsF~r~k~~~~~~-~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 293 LIILDPPSFARSKKQEFSA-QRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EEEECCcccccCcccchhH-HHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999731 11111 24678899999999999999888875543
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=2.5e-07 Score=86.10 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
...+.+++.+...++++|||||||+|.++..++++ +..++++|+++.+++.++++... .+++++..+ |+.+.+
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~-D~~~~~-- 88 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEG-DALKVD-- 88 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEEC-chhcCC--
Confidence 45567888888888999999999999999999986 56899999999999999887643 357999999 998876
Q ss_pred CccccCCCccc---EEEEc
Q 047022 251 NMTELFLGNFS---TVFIC 266 (381)
Q Consensus 251 ~l~~~~~~~fD---~Ivs~ 266 (381)
+ ..|| +|+++
T Consensus 89 ----~--~~~d~~~~vvsN 101 (253)
T TIGR00755 89 ----L--PDFPKQLKVVSN 101 (253)
T ss_pred ----h--hHcCCcceEEEc
Confidence 1 2466 77776
No 180
>PLN02823 spermine synthase
Probab=98.67 E-value=3.2e-07 Score=88.33 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=81.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...+||.||+|.|..+.+++++. ..+++.+|+++++++.|++.+...+ + .++++++.+ |.+..-. ...++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~-Da~~~L~-----~~~~~ 176 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIN-DARAELE-----KRDEK 176 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEC-hhHHHHh-----hCCCC
Confidence 45699999999999999998863 4689999999999999999875321 1 368999999 9887531 13478
Q ss_pred ccEEEEchh-------hHhhChhcHHHHHH-HHHhccccCceEEEEc
Q 047022 260 FSTVFICGM-------IEAVGHDYMEELFS-CCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~-------l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~~ 298 (381)
||+|++-.. ..++ ...++++ .+.+.|+|||++++..
T Consensus 177 yDvIi~D~~dp~~~~~~~~L---yt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 177 FDVIIGDLADPVEGGPCYQL---YTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ccEEEecCCCccccCcchhh---ccHHHHHHHHHHhcCCCcEEEEec
Confidence 999998621 1111 2357887 8999999999977653
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.67 E-value=2.4e-07 Score=92.93 Aligned_cols=115 Identities=12% Similarity=0.127 Sum_probs=89.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 181 KLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+++|.+|||++||.|+-+.+++... ...++++|+++.-++.+++++...|+. ++.+... |...+.. ...+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~-D~~~~~~-----~~~~ 182 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHF-DGRVFGA-----ALPE 182 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeC-chhhhhh-----hchh
Confidence 66899999999999999999999873 358999999999999999999999986 6888888 8876541 2336
Q ss_pred cccEEEE----ch--hhHhhC-------hh-------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 259 NFSTVFI----CG--MIEAVG-------HD-------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 259 ~fD~Ivs----~~--~l~~~~-------~~-------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.||.|+. ++ ++..-+ .+ -..++++.+.+.|||||+++.+++.-.
T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 7999993 32 222211 11 125788999999999999988887643
No 182
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.66 E-value=1.1e-07 Score=96.91 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHHHcCCC-------CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC
Q 047022 163 EDLEVGQIRKVSVLIEKVKLV-------KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQD 234 (381)
Q Consensus 163 ~~l~~aq~~~~~~l~~~l~~~-------~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~ 234 (381)
..+.+.|.+.++.....+.+. .+..+||||||.|.++..+|+. +...++|+|++...+..+.+++...++.
T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~- 397 (506)
T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT- 397 (506)
T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-
Confidence 357777777766655554432 3568999999999999999988 7889999999999999998888888885
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
|+.+... |+..+.. .++++++|.|+..+-=.|.-.. --+.+++.+.++|||||.+.+.+....|
T Consensus 398 N~~~~~~-~~~~~~~----~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 398 NFLLFPN-NLDLILN----DLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred eEEEEcC-CHHHHHH----hcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 8888888 8765431 2456889999998433222111 1357999999999999999888765443
No 183
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.66 E-value=5.1e-07 Score=82.24 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCcccc
Q 047022 170 IRKVSVLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l 247 (381)
..++..+++...+ .++.+|||+|||+|.++..++++...+|+++|++++|+....+ .. .++. +... |++.+
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~-ni~~~ 132 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERT-NIRYV 132 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecC-CcccC
Confidence 3556677777765 4778999999999999999999633489999999988875211 11 2332 3444 55544
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+.+. ..-..+|+++++. ...+..+.++|+| |.+++-+
T Consensus 133 ~~~~~~-~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 133 TPADIF-PDFATFDVSFISL----------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CHhHcC-CCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEEEc
Confidence 322110 1124688777762 3346778999999 7755443
No 184
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.63 E-value=2.7e-08 Score=98.00 Aligned_cols=117 Identities=15% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCC--CCC--CEEEEecCCchHHHHHHHHhcCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 169 QIRKVSVLIEKVKL--VKG--QEVLEIGCGWGTLAIEIVRQTGCKYTGITL---SELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 169 q~~~~~~l~~~l~~--~~~--~~VLDiGcG~G~~~~~la~~~~~~v~gvDi---s~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
....+++|.+.+.. ..| ..+||+|||.|+++.++..+ +..+..+.+ .+.|++.|.++ |++.-+.+.
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~-- 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL-- 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----Ccchhhhhh--
Confidence 34556666666655 222 46899999999999999986 665555443 34566666555 655222221
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-...+| |+++.||+|-|..++-..... -..++-++.|+|+|||+++.+.|.
T Consensus 171 -~s~rLP------fp~~~fDmvHcsrc~i~W~~~-~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 171 -GSQRLP------FPSNAFDMVHCSRCLIPWHPN-DGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred -cccccc------CCccchhhhhcccccccchhc-ccceeehhhhhhccCceEEecCCc
Confidence 234667 788999999998887655432 256889999999999998888765
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.62 E-value=4.9e-07 Score=74.94 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
.+.+.+...++.+|||||||.|. ++..+++ .|..|+++|+++..++.+++. .+++..+ |..+.+.+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~--------~~~~v~d-Dlf~p~~~--- 73 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL--------GLNAFVD-DLFNPNLE--- 73 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh--------CCeEEEC-cCCCCCHH---
Confidence 34555555567899999999996 8888887 499999999999988877665 3678888 98876522
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.-..+|+|.++ -|+.++...+.++.+.+.- -++|.
T Consensus 74 --~y~~a~liysi-----rpp~el~~~~~~la~~~~~--~~~i~ 108 (134)
T PRK04148 74 --IYKNAKLIYSI-----RPPRDLQPFILELAKKINV--PLIIK 108 (134)
T ss_pred --HHhcCCEEEEe-----CCCHHHHHHHHHHHHHcCC--CEEEE
Confidence 34779999998 3444455555555554332 25554
No 186
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.61 E-value=4.9e-07 Score=85.61 Aligned_cols=151 Identities=10% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
-...+|+|.|.|..+..+..++ .++.+++.....+-.+.+... . .|+...+ |..+-. .+-|+|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~----gV~~v~g-dmfq~~---------P~~daI~ 241 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-P----GVEHVAG-DMFQDT---------PKGDAIW 241 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-C----Ccceecc-cccccC---------CCcCeEE
Confidence 3789999999999999998863 358888888777766666553 2 2777777 765544 2347999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcC---C-CCCC----CCCCchhhhhhhccCCCCCCCHHHHHHHHHhc
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP---D-QCYD----EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSS 336 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~---~-~~~~----~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~ 336 (381)
..++++|+++++..++|++|...|+|||.+++... . .... ......+..+..+.++|.-.+..+. +.+..+
T Consensus 242 mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~-q~l~~~ 320 (342)
T KOG3178|consen 242 MKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEF-QALLPE 320 (342)
T ss_pred EEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHH-Hhcchh
Confidence 99999999999999999999999999999776432 2 1111 1112334445555677777778777 556667
Q ss_pred CCcEEEEEEecchhHH
Q 047022 337 SRLCVEHLENIETHYY 352 (381)
Q Consensus 337 ~Gf~v~~~~~~~~~y~ 352 (381)
+||.+..+.....+|.
T Consensus 321 ~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 321 EGFPVCMVALTAYSYS 336 (342)
T ss_pred hcCceeEEEeccCccc
Confidence 8999887766655553
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=4.4e-07 Score=80.57 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=79.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CCC-ccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FLG-NFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~~-~fD 261 (381)
++.+|||++||+|.+++.++.+...+|+++|.++..++.+++++...++.+++++..+ |+.+.-. .. ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~-D~~~~l~----~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRN-SALRALK----FLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEeh-hHHHHHH----HhhccCCCce
Confidence 5789999999999999999997334899999999999999999999888778999999 9854310 01 112 477
Q ss_pred EEEEchhhHhhChhcHHHHHHHHH--hccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCE--SLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~--~~LkpgG~~~i~~~~ 300 (381)
+|+..--+.. ......++.+. .+|+++|.+++..+.
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 7776432221 22445555444 468999988887543
No 188
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.60 E-value=3.8e-07 Score=89.51 Aligned_cols=103 Identities=20% Similarity=0.191 Sum_probs=82.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|||++||+|.+++.++...+ .+|+++|+++..++.++++++.+++. ++++..+ |+..+.. ..++||+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~-Da~~~l~------~~~~fD~ 128 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNK-DANALLH------EERKFDV 128 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhh-hHHHHHh------hcCCCCE
Confidence 356999999999999999988644 48999999999999999999988885 6778999 9876531 1367999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+..- + + ....++....+.++|||.++++..+
T Consensus 129 V~lDP-~---G--s~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 129 VDIDP-F---G--SPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred EEECC-C---C--CcHHHHHHHHHHhcCCCEEEEEecC
Confidence 99863 1 2 2467888877889999999998543
No 189
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.59 E-value=3.6e-07 Score=84.92 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCch----HHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHH-----H
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWG----TLAIEIVRQT------GCKYTGITLSELQLKYAEIKV-----K 228 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G----~~~~~la~~~------~~~v~gvDis~~~~~~a~~~~-----~ 228 (381)
.++.-....+..++..... ..-+|.-.||++| ++++.+.+.. ..+|+++|+|...++.|++-. .
T Consensus 77 ~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~ 155 (268)
T COG1352 77 HFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSREL 155 (268)
T ss_pred HHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHh
Confidence 3444444444444443322 3579999999999 4555555542 468999999999999988521 1
Q ss_pred HcCCC-----------------------CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHH
Q 047022 229 EAGLQ-----------------------DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCE 285 (381)
Q Consensus 229 ~~gl~-----------------------~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~ 285 (381)
..+++ ..|.|... |..+-+ ...+.||+|+|.+++-++..+....+++.++
T Consensus 156 ~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~-NLl~~~------~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268)
T COG1352 156 LRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRH-NLLDDS------PFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268)
T ss_pred hccCCHHHHhhhEeecCCCcEEEChHHhcccEEeec-CCCCCc------cccCCCCEEEEcceEEeeCHHHHHHHHHHHH
Confidence 01221 34667766 665544 1347899999999999998888899999999
Q ss_pred hccccCceEEEEcC
Q 047022 286 SLLAENGLSCSTVP 299 (381)
Q Consensus 286 ~~LkpgG~~~i~~~ 299 (381)
..|+|||.+++...
T Consensus 229 ~~L~~gG~LflG~s 242 (268)
T COG1352 229 DSLKPGGLLFLGHS 242 (268)
T ss_pred HHhCCCCEEEEccC
Confidence 99999999998643
No 190
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.59 E-value=2.3e-07 Score=84.47 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.++.|+++..+++++.|||||.|||.++..+.+. +.+|+++++++.|+....++......+.+.++..+ |+...+
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~g-D~lK~d--- 120 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHG-DFLKTD--- 120 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEec-ccccCC---
Confidence 4568999999999999999999999999999995 99999999999999999999986666689999999 998765
Q ss_pred ccccCCCcccEEEEc
Q 047022 252 MTELFLGNFSTVFIC 266 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~ 266 (381)
...||.+|++
T Consensus 121 -----~P~fd~cVsN 130 (315)
T KOG0820|consen 121 -----LPRFDGCVSN 130 (315)
T ss_pred -----Ccccceeecc
Confidence 2569999985
No 191
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.59 E-value=3.7e-07 Score=85.68 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQ-DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~-~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+.+|||+-|=+|+++.+++.. |+ +|++||.|...++.+++++..+++. ++++++.. |+.+.-.. + -..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~-Dvf~~l~~-~--~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQG-DVFKFLKR-L--KKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-H--HHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec-CHHHHHHH-H--hcCCCCC
Confidence 5889999999999999998874 65 7999999999999999999999986 68999999 98653200 0 0236899
Q ss_pred EEEEch------hhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 262 TVFICG------MIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 262 ~Ivs~~------~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
+||+-- .+. + ..++..++..+.++|+|||.++++...+
T Consensus 198 ~IIlDPPsF~k~~~~-~-~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 198 LIILDPPSFAKSKFD-L-ERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEE--SSEESSTCE-H-HHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEEECCCCCCCCHHH-H-HHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 999731 111 1 1467889999999999999988776543
No 192
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5e-07 Score=79.35 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHHHcC--CCCCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeEEEE
Q 047022 175 VLIEKVK--LVKGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAG--------L-QDTSDYIF 240 (381)
Q Consensus 175 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~g--------l-~~~i~~~~ 240 (381)
.+++.|. +.||.+.||+|+|+|.++..++.. .|..++|||.-++.++++++++...- + ..++.+.+
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 4555555 679999999999999999888865 34456999999999999999876532 1 24678899
Q ss_pred ecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 241 VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 241 ~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+ |.+...+ +..+||+|.+.... ...-+++...|+|||.++|-..
T Consensus 151 G-Dgr~g~~------e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 151 G-DGRKGYA------EQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred C-CccccCC------ccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEeec
Confidence 9 9988763 34889999998332 4445567788999999877554
No 193
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.53 E-value=4.3e-07 Score=76.93 Aligned_cols=113 Identities=17% Similarity=0.049 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...++...|.-|||+|.|+|.++..+.++ ....++.++.|++......+.. +.++++.+ |+.++. ..+
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~g-da~~l~-~~l 110 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIING-DAFDLR-TTL 110 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCcccccc-chhhHH-HHH
Confidence 5677778888999999999999999999987 4457999999999999888775 34678888 887764 112
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.+.....||.|+|.--+-.++.....++++.+...|.+||.++
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 2356678999999877777776667889999999999999854
No 194
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=5.4e-07 Score=82.93 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+.++.+++.+.+.+++.|||||+|.|.++..++++ +.+|+++++++.+++..+++.. ..++++++.+ |+...+
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~-DaLk~d-- 89 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVING-DALKFD-- 89 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeC-chhcCc--
Confidence 55778999999999999999999999999999996 8899999999999999998875 2368999999 998887
Q ss_pred CccccCCC-cccEEEEc
Q 047022 251 NMTELFLG-NFSTVFIC 266 (381)
Q Consensus 251 ~l~~~~~~-~fD~Ivs~ 266 (381)
++.- .++.|+++
T Consensus 90 ----~~~l~~~~~vVaN 102 (259)
T COG0030 90 ----FPSLAQPYKVVAN 102 (259)
T ss_pred ----chhhcCCCEEEEc
Confidence 2211 68999986
No 195
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.51 E-value=4.9e-06 Score=77.29 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=101.0
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----------------------------------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE---------------------------------- 229 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~---------------------------------- 229 (381)
...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3578999999999999999996 99999999999886543332111
Q ss_pred -----cCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC
Q 047022 230 -----AGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD 304 (381)
Q Consensus 230 -----~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~ 304 (381)
.....++....+ |+.++.+.. ...++||+|++++.+... .|...+++.+.++|||||. .|...+-.|.
T Consensus 135 ~p~~~~~~~~~~sm~aG-DF~e~y~~~---~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~-WIN~GPLlyh 207 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAG-DFLEVYGPD---ENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGY-WINFGPLLYH 207 (270)
T ss_pred CcccccCCCCceeEecC-ccEEecCCc---ccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCE-EEecCCcccc
Confidence 001135666777 777664210 113799999999877766 6789999999999999994 5555443332
Q ss_pred CCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEEEEEEe-cchhH
Q 047022 305 EHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLEN-IETHY 351 (381)
Q Consensus 305 ~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~~-~~~~y 351 (381)
..... . -.....-.+.+|+...+. ..||++++.+. ....|
T Consensus 208 ~~~~~---~---~~~~sveLs~eEi~~l~~-~~GF~~~~~~~~i~~~Y 248 (270)
T PF07942_consen 208 FEPMS---I---PNEMSVELSLEEIKELIE-KLGFEIEKEESSILSGY 248 (270)
T ss_pred CCCCC---C---CCCcccCCCHHHHHHHHH-HCCCEEEEEEEeeecCC
Confidence 11000 0 000113456788865555 58999987665 44444
No 196
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.49 E-value=1.3e-06 Score=81.88 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=83.6
Q ss_pred CEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAG--L-QDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~g--l-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+||-||.|.|+.+..++++. -.+++.+||++..++.+++.+.... . .+|++++.+ |..+.-.+ ...+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~-Dg~~~v~~-----~~~~fD 151 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID-DGVEFLRD-----CEEKFD 151 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec-cHHHHHHh-----CCCcCC
Confidence 699999999999999999983 4689999999999999999886533 2 368999999 98776411 224899
Q ss_pred EEEEchhhHhhChh---cHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHD---YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~---~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|++...=. .++. .-..+++.|+++|+|+|+++....+
T Consensus 152 vIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 152 VIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 999863222 2210 2378999999999999998876444
No 197
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.8e-06 Score=77.47 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
+..|+..+.+.||.+|||-|.|+|.++.++++. +-.++...|....-.+.|.+.++..|+.+++++... |.....-.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hr-DVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHR-DVCGSGFL 172 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEe-ecccCCcc
Confidence 557889999999999999999999999999987 557999999999999999999999999999999999 98766410
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+..+|.|+.. ++ ++-.++-.+..+||.+|.-+.+
T Consensus 173 ----~ks~~aDaVFLD-----lP--aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 173 ----IKSLKADAVFLD-----LP--APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ----ccccccceEEEc-----CC--ChhhhhhhhHHHhhhcCceEEe
Confidence 125789999886 43 3556666777899998864433
No 198
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.45 E-value=5.3e-07 Score=85.07 Aligned_cols=89 Identities=12% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+++.+.+.|+..+||.+||.|+.+..+++.. .++|+|+|.++++++.+++++.. .++++++.+ |+.++...
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~-~f~~l~~~ 83 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHG-NFSNLKEV 83 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeC-CHHHHHHH
Confidence 4577888888899999999999999999999884 47999999999999999998754 358999999 99876411
Q ss_pred CccccCCCcccEEEEch
Q 047022 251 NMTELFLGNFSTVFICG 267 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~ 267 (381)
+.. ...++|.|+...
T Consensus 84 -l~~-~~~~vDgIl~DL 98 (296)
T PRK00050 84 -LAE-GLGKVDGILLDL 98 (296)
T ss_pred -HHc-CCCccCEEEECC
Confidence 000 112799999754
No 199
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.43 E-value=8.9e-07 Score=81.68 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------------------CCe
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---------------------------DTS 236 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---------------------------~~i 236 (381)
+|.++||||||+-.....-|...-.+++..|.++.-++..++.++..+.. ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 57799999999854432222222347999999998888777655432210 124
Q ss_pred E-EEEecCccccCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhh
Q 047022 237 D-YIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFI 313 (381)
Q Consensus 237 ~-~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i 313 (381)
+ ++.+ |..+.+|-.-......+||+|++..+++.+.. +.+...++++.++|||||.+++..--... .| .+
T Consensus 136 k~Vv~c-DV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t-~Y-----~v 208 (256)
T PF01234_consen 136 KQVVPC-DVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST-YY-----MV 208 (256)
T ss_dssp EEEEE---TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S-EE-----EE
T ss_pred ceEEEe-eccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce-eE-----EE
Confidence 3 5667 88776532100001235999999999998863 35778899999999999996664321110 00 01
Q ss_pred hhhccCCCCCCCHHHHHHHHHhcCCcEEEEEE
Q 047022 314 KEYIFPSGCLPSLRRVTSAMTSSSRLCVEHLE 345 (381)
Q Consensus 314 ~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~~~ 345 (381)
...-||. ++-..+.++...+++||.+++.+
T Consensus 209 G~~~F~~--l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 209 GGHKFPC--LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TTEEEE-----B-HHHHHHHHHHTTEEEEEEE
T ss_pred CCEeccc--ccCCHHHHHHHHHHcCCEEEecc
Confidence 1111222 23333444444456999998876
No 200
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.41 E-value=7.1e-06 Score=78.42 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE--EEec
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDY--IFVI 242 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~--~~~~ 242 (381)
++....|++.+ .++..|+|+|||.|.-+..+.+. ...+++++|+|.++++.+.+++.....+ .+++ +.+
T Consensus 64 ~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~g- 139 (319)
T TIGR03439 64 KKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLG- 139 (319)
T ss_pred HHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEe-
Confidence 34445566665 47779999999999876665544 2468999999999999999998744443 4554 778
Q ss_pred CccccCcCCccc-cCCCcccEEEEch-hhHhhChhcHHHHHHHHHh-ccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTE-LFLGNFSTVFICG-MIEAVGHDYMEELFSCCES-LLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~-~~~~~fD~Ivs~~-~l~~~~~~~~~~~l~~~~~-~LkpgG~~~i~~~~ 300 (381)
|+.+.-. -++. .......+++..+ ++..+.+.+...+++++++ .|+|||.+++.+.-
T Consensus 140 dy~~~l~-~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 140 TYDDGLA-WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cHHHHHh-hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 8865310 0000 0123457777665 8888888888899999999 99999999887643
No 201
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.41 E-value=2.7e-06 Score=82.96 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.++.+++.+...+ .+|||++||+|.+++.+++. ..+|+++|+++++++.|++++..+++. ++++..+ |..+.....
T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~-d~~~~~~~~ 261 (353)
T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRM-SAEEFTQAM 261 (353)
T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEc-CHHHHHHHH
Confidence 3445555554333 47999999999999999886 469999999999999999999998885 7999999 987643110
Q ss_pred cc--cc---C-----CCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEcC
Q 047022 252 MT--EL---F-----LGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 252 l~--~~---~-----~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.. .+ . ...||+|+.. -|... ...+++.+. +|++.++++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~lD-----PPR~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFVD-----PPRAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred hhccccccccccccccCCCCEEEEC-----CCCCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 00 00 0 1238999885 22111 234444443 47888888753
No 202
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.40 E-value=4.6e-06 Score=81.59 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
..++.+.+.+... +.+|||++||+|.+++.+++. ..+|+++|+++.+++.+++++..+++. ++++..+ |+.+.-..
T Consensus 194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~-d~~~~l~~ 269 (362)
T PRK05031 194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRM-SAEEFTQA 269 (362)
T ss_pred HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEC-CHHHHHHH
Confidence 3344555555432 357999999999999998885 569999999999999999999988885 8999999 98763210
Q ss_pred Ccccc-----------CCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTEL-----------FLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~-----------~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+... ...+||+|+.. -|... ...+++.+. +|++.++++.
T Consensus 270 -~~~~~~~~~~~~~~~~~~~~D~v~lD-----PPR~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 270 -MNGVREFNRLKGIDLKSYNFSTIFVD-----PPRAGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred -HhhcccccccccccccCCCCCEEEEC-----CCCCCCcHHHHHHHH---ccCCEEEEEe
Confidence 0000 01258999985 22111 234444444 4777788875
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.37 E-value=4e-06 Score=73.85 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+++|||+|.|-.++.++-. +..+++.+|.+..-+...+......++. ++++..+ .+++.. ...+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~-R~E~~~-------~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVING-RAEEPE-------YRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES--HHHTT-------TTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEe-eecccc-------cCCCccEEEe
Confidence 8999999999888777655 7889999999999999999999999996 8999999 998822 4489999999
Q ss_pred chhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 266 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+ ..+..+++-+...|++||.++.--
T Consensus 122 RAv------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 122 RAV------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ESS------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ehh------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 853 246788899999999999966543
No 204
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=2.5e-06 Score=81.65 Aligned_cols=104 Identities=20% Similarity=0.332 Sum_probs=87.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
++++.. ++|.+|||.-||-|.+++.+|++ +. +|+++|++|..++++++++..+++.+.+..+++ |.++..+
T Consensus 181 Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~g-D~rev~~---- 252 (341)
T COG2520 181 RVAELV--KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILG-DAREVAP---- 252 (341)
T ss_pred HHHhhh--cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCccceeeEEec-cHHHhhh----
Confidence 444444 46999999999999999999996 54 499999999999999999999999988999999 9999872
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
..+.+|.|+.. .+ .....++....+++++||.+
T Consensus 253 --~~~~aDrIim~-----~p-~~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 253 --ELGVADRIIMG-----LP-KSAHEFLPLALELLKDGGII 285 (341)
T ss_pred --ccccCCEEEeC-----CC-CcchhhHHHHHHHhhcCcEE
Confidence 22789999997 32 23467888889999999983
No 205
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=3.1e-06 Score=84.15 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
...+...++.+...++++|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |++|..+ +.++..+
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~-~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAG-DAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeC-CHHHHhh
Confidence 455677888888888999999999999999999975 889999999999999999999999997 5999999 9988763
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHH-HHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYME-ELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~-~~l~~~~~~LkpgG~~~i~~ 298 (381)
.. .....+|.|+.. -|..... .+++.+. .++|-.+++|+.
T Consensus 356 ~~---~~~~~~d~VvvD-----PPR~G~~~~~lk~l~-~~~p~~IvYVSC 396 (432)
T COG2265 356 AW---WEGYKPDVVVVD-----PPRAGADREVLKQLA-KLKPKRIVYVSC 396 (432)
T ss_pred hc---cccCCCCEEEEC-----CCCCCCCHHHHHHHH-hcCCCcEEEEeC
Confidence 21 123578999986 4433344 4444444 467888888886
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.36 E-value=1.7e-06 Score=79.93 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEecCccccCcCCccccCCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGL---QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl---~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+...+||-||.|.|..+..+.+++ ..+++++|+++..++.|++.+..... .+|++++.+ |....-.. ..+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~-Dg~~~l~~-----~~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIG-DGRKFLKE-----TQE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEES-THHHHHHT-----SSS
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEh-hhHHHHHh-----ccC
Confidence 356799999999999999998874 46999999999999999998765322 358999999 98765311 224
Q ss_pred -cccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEEEc
Q 047022 259 -NFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 -~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|+.-..-...+. -.-.++++.+.++|+|||.+++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8999998432211111 124789999999999999988765
No 207
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.36 E-value=1.2e-06 Score=77.39 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=79.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|.+|||+-||+|.++++++.+...+|+.||.++..++..+++++..++.+++++..+ |....-.. + .....+||+|
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~-d~~~~l~~-~-~~~~~~fDiI 118 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG-DAFKFLLK-L-AKKGEKFDII 118 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES-SHHHHHHH-H-HHCTS-EEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc-CHHHHHHh-h-cccCCCceEE
Confidence 6889999999999999999987345999999999999999999999998878999999 85432100 0 0134789999
Q ss_pred EEchhhHhhChhc-HHHHHHHHH--hccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDY-MEELFSCCE--SLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~-~~~~l~~~~--~~LkpgG~~~i~~~~ 300 (381)
+..--... .. ....++.+. .+|+++|.+++....
T Consensus 119 flDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 119 FLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred EECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 98632221 12 366777776 799999999987654
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.34 E-value=8.3e-07 Score=76.27 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=57.1
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc-ccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~-fD~Ivs 265 (381)
.|+|+.||.|+.++++|+. ..+|+++|+++..++.|+.++.-.|+.++|+++.+ |+.++... +.... ||+|+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~g-D~~~~~~~----~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICG-DFFELLKR----LKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES--HHHHGGG----B------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeC-CHHHHHhh----ccccccccEEEE
Confidence 6999999999999999996 77999999999999999999999999999999999 99876421 12222 899997
Q ss_pred c
Q 047022 266 C 266 (381)
Q Consensus 266 ~ 266 (381)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 4
No 209
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=1.4e-05 Score=77.18 Aligned_cols=117 Identities=20% Similarity=0.214 Sum_probs=89.8
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-----------------------------------------EEEEE
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-----------------------------------------KYTGI 213 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-----------------------------------------~v~gv 213 (381)
.++...+-+++..++|--||+|++++.+|.. +. .++|+
T Consensus 182 Ail~lagw~~~~pl~DPmCGSGTi~IEAAl~-~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381)
T COG0116 182 AILLLAGWKPDEPLLDPMCGSGTILIEAALI-AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381)
T ss_pred HHHHHcCCCCCCccccCCCCccHHHHHHHHh-ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe
Confidence 5566677778889999999999999998875 21 37799
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhChh-----cHHHHHHHHHhc
Q 047022 214 TLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVGHD-----YMEELFSCCESL 287 (381)
Q Consensus 214 Dis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~~~-----~~~~~l~~~~~~ 287 (381)
|+++.+++.|+.++..+|+.+.|+|.++ |+..+.+ +.+.+|+|||+--. +-++.+ -+..+.+.+++.
T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~-d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQA-DATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEc-chhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999872 11789999996411 111111 244566667777
Q ss_pred cccCceEEEEcC
Q 047022 288 LAENGLSCSTVP 299 (381)
Q Consensus 288 LkpgG~~~i~~~ 299 (381)
++--+..++++.
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 777777666654
No 210
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.4e-05 Score=77.90 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT---GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
.....+..+||.+|||++++.|+=+.++++.. +..|+++|+++.-++..++++...|+. ++..... |...++..
T Consensus 147 l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~-d~~~~~~~- 223 (355)
T COG0144 147 LPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNK-DARRLAEL- 223 (355)
T ss_pred HHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEec-cccccccc-
Confidence 44567888999999999999999999998872 456799999999999999999999987 5788888 77655411
Q ss_pred ccccCC-CcccEEEE------chhhHhhCh--------------hcHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 252 MTELFL-GNFSTVFI------CGMIEAVGH--------------DYMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 252 l~~~~~-~~fD~Ivs------~~~l~~~~~--------------~~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
... ++||.|+. .+++.-=|+ .-..+++....++|||||.++.+++.-..
T Consensus 224 ---~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 224 ---LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ---ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 122 35999996 223311111 12447899999999999999888876443
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.29 E-value=7.3e-06 Score=76.05 Aligned_cols=99 Identities=12% Similarity=-0.070 Sum_probs=74.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+...+||=||.|.|+.+.+++++. .+|+.+||++++++.+++.+... ++ .+|++++.. +.+. ..+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--~~~~--------~~~ 138 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--LLDL--------DIK 138 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--hhhc--------cCC
Confidence 4556899999999999999999974 59999999999999999965432 22 235555532 2111 236
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+||+|++-.. ..+.+++.++++|+|||.++.-.
T Consensus 139 ~fDVIIvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 139 KYDLIICLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCEEEEcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 8999998632 23788899999999999987754
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.29 E-value=2.3e-06 Score=76.78 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHH-------HHcCC-CCCeEEEEe
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKV-------KEAGL-QDTSDYIFV 241 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~-------~~~gl-~~~i~~~~~ 241 (381)
..+..+++.+++.+++..+|||||.|....++|...+++ .+||++.+...+.|+... +..|. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 445678889999999999999999999999888776765 999999999887776533 22333 246778888
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+.+.+.. ...-...|+|++++... + ++....+.+....||||-+++.
T Consensus 109 -dfl~~~~~---~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 109 -DFLDPDFV---KDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp --TTTHHHH---HHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred -CccccHhH---hhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE
Confidence 77653200 00013479999987642 2 3456667777888888877543
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.28 E-value=9.5e-06 Score=86.03 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHcCC-CCCCEEEEecCCchHHHHHHHHh-----c--------------------------------------CCEE
Q 047022 175 VLIEKVKL-VKGQEVLEIGCGWGTLAIEIVRQ-----T--------------------------------------GCKY 210 (381)
Q Consensus 175 ~l~~~l~~-~~~~~VLDiGcG~G~~~~~la~~-----~--------------------------------------~~~v 210 (381)
.++..... +++..++|.+||+|++++.+|.. + ..++
T Consensus 180 a~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i 259 (702)
T PRK11783 180 AILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKF 259 (702)
T ss_pred HHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceE
Confidence 45555555 56889999999999999988752 1 1369
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh-HhhCh-hcHHHHHHHHHhcc
Q 047022 211 TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI-EAVGH-DYMEELFSCCESLL 288 (381)
Q Consensus 211 ~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l-~~~~~-~~~~~~l~~~~~~L 288 (381)
+|+|+++.+++.|++++..+|+.+.+++..+ |+.+++.. ...++||+|+++--. +.++. .+...+++.+.+.|
T Consensus 260 ~G~Did~~av~~A~~N~~~~g~~~~i~~~~~-D~~~~~~~----~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 260 YGSDIDPRVIQAARKNARRAGVAELITFEVK-DVADLKNP----LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCcceEEEeC-Chhhcccc----cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999 99887621 123579999997322 11221 23445555555555
Q ss_pred c---cCceEEEEcCCCC
Q 047022 289 A---ENGLSCSTVPDQC 302 (381)
Q Consensus 289 k---pgG~~~i~~~~~~ 302 (381)
| ||+..++.+++..
T Consensus 335 k~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 335 KQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHhCCCCeEEEEeCCHH
Confidence 4 8888776665543
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=9e-06 Score=73.00 Aligned_cols=97 Identities=20% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCEEEEecCCchHHHHHHHH-hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc-ccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVR-QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN-FST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~-~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~-fD~ 262 (381)
+.+++|||+|.|-.++.+|- .++.+++-+|....-+.+.++...+.+++ +++++.+ .+++.. .... ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~-RaE~~~-------~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHG-RAEEFG-------QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehh-hHhhcc-------cccccCcE
Confidence 58999999999999888773 37888999999999999999999999986 8999999 988886 2234 999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
|+|..+ .....+++-+..++|+||.++.
T Consensus 139 vtsRAv------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 139 VTSRAV------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEeehc------cchHHHHHHHHHhcccCCcchh
Confidence 999853 3457788889999999998543
No 215
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=6.7e-05 Score=64.66 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=77.4
Q ss_pred CCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
..-+||||||+|..+..+++. +++.+.++|++|..++...+.+..++. ++..+.. |...-- ..++.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~t-dl~~~l-------~~~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRT-DLLSGL-------RNESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeeh-hHHhhh-------ccCCccE
Confidence 568999999999999999987 567899999999999998888887764 4777777 765432 3478888
Q ss_pred EEEchhh---------------HhhC----hhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMI---------------EAVG----HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l---------------~~~~----~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++.+--. .+.+ .+-...++..+..+|.|.|.+++..
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 8764211 1111 1124577888889999999977654
No 216
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.23 E-value=2.5e-05 Score=65.95 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=73.6
Q ss_pred CCCCEEEEecCCchHHHHHHHH-----hcCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEecCccccCcCCcccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVR-----QTGCKYTGITLSELQLKYAEIKVKEAG--LQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~-----~~~~~v~gvDis~~~~~~a~~~~~~~g--l~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
.+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+.++....+ +..++++..+ +.....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~------- 95 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG-DIADES------- 95 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc-chhhhc-------
Confidence 5778999999999999999998 678999999999999999999988776 4456666666 554443
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....++++..+.=-.+ -+..++.+.+ |+-..++.+|
T Consensus 96 ~~~~~~~~vgLHaCG~L----s~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 96 SSDPPDILVGLHACGDL----SDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred ccCCCeEEEEeecccch----HHHHHHHHHH---cCCCEEEEcC
Confidence 24667888876433222 3445555544 6655555544
No 217
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.6e-06 Score=69.65 Aligned_cols=86 Identities=21% Similarity=0.293 Sum_probs=67.2
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+-...+--.|.+++|+|||.|-++...+-.....|+|+||.|+.++.+++++.+..++ +++.++ |+.++.
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqc-dildle------ 109 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQC-DILDLE------ 109 (185)
T ss_pred HHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeee-eccchh------
Confidence 33344444468899999999999996655433457999999999999999999887764 799999 998876
Q ss_pred cCCCcccEEEEchhh
Q 047022 255 LFLGNFSTVFICGMI 269 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l 269 (381)
+..+.||.++.+--+
T Consensus 110 ~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 110 LKGGIFDTAVINPPF 124 (185)
T ss_pred ccCCeEeeEEecCCC
Confidence 345889999986543
No 218
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.19 E-value=3.6e-05 Score=67.38 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred HHHHHcCC--CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKL--VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~--~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.+...+.. -.|.++||+-+|+|.++++++.+....++.||.+...+...++++...++..+.++... |....-.. +
T Consensus 32 alFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~-da~~~L~~-~ 109 (187)
T COG0742 32 ALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN-DALRALKQ-L 109 (187)
T ss_pred HHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee-cHHHHHHh-c
Confidence 34444443 36899999999999999999998556899999999999999999999988888999999 87743100 0
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHH--HHhccccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSC--CESLLAENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~--~~~~LkpgG~~~i~~~~ 300 (381)
-..++||+|+.---++ .+.-+....+.. -..+|+|+|.+++....
T Consensus 110 --~~~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 --GTREPFDLVFLDPPYA-KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred --CCCCcccEEEeCCCCc-cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 0113599999864333 111111222333 44779999999987654
No 219
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.18 E-value=2.1e-06 Score=79.06 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+.....+++... .+..++|+|||.|... ...+.+.++|.|++...+..+++. | ......+ |+..++
T Consensus 33 Wp~v~qfl~~~~--~gsv~~d~gCGngky~---~~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~a-d~l~~p- 98 (293)
T KOG1331|consen 33 WPMVRQFLDSQP--TGSVGLDVGCGNGKYL---GVNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRA-DALKLP- 98 (293)
T ss_pred cHHHHHHHhccC--CcceeeecccCCcccC---cCCCcceeeecchhhhhccccccC----C---Cceeehh-hhhcCC-
Confidence 344556666654 5889999999998654 223678899999999888777654 1 1256667 888888
Q ss_pred CCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+...+||.++++.+++|+.... ...+++++.++|+|||...|.
T Consensus 99 -----~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 99 -----FREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred -----CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5678999999999999997543 567899999999999995543
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.17 E-value=2.5e-05 Score=76.39 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=82.1
Q ss_pred CCEEEEecCCchHHHHHHHHhc-C-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQT-G-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~-~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+.+|||+.||+|..++.++.+. | .+|+++|+++..++.++++++.+++. ++++..+ |+..+-. ....+||+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~-Da~~~l~-----~~~~~fDv 117 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNE-DAANVLR-----YRNRKFHV 117 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEch-hHHHHHH-----HhCCCCCE
Confidence 3589999999999999999872 4 58999999999999999999988775 6889999 8876641 12357999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
|...- + + .+..++..+.+.+++||.+.++.
T Consensus 118 IdlDP-f---G--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 118 IDIDP-F---G--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EEeCC-C---C--CcHHHHHHHHHhcccCCEEEEEe
Confidence 98853 2 1 24678999999999999988874
No 221
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.16 E-value=8.3e-06 Score=78.13 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEe
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--------TGCKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFV 241 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~--------~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~ 241 (381)
...+.+++.+...++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+-++.-.+.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 44456777777788889999999999999888763 467899999999999999888766555433 457777
Q ss_pred cCccccCcCCccccCCCcccEEEEchhhHhh--C----------------hh-cHHHHHHHHHhccccCceEEEEcCC
Q 047022 242 ITVNCLKPTNMTELFLGNFSTVFICGMIEAV--G----------------HD-YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 242 ~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~--~----------------~~-~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|....+.. .....||+|+++--+... . .. .--.++..+.+.|++||++.+.+|+
T Consensus 113 -d~l~~~~~----~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 113 -DSLENDKF----IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp --TTTSHSC----TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred -cccccccc----ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 76544310 014789999996432211 0 00 1124789999999999997777665
No 222
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.14 E-value=3.5e-06 Score=74.16 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred HHHHHHHHHHcC-CCCC--CEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 170 IRKVSVLIEKVK-LVKG--QEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 170 ~~~~~~l~~~l~-~~~~--~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
.-|+..+.++.+ +.++ .+|||+||++|+++..+.++. ..+|+|+|+.+. ... ..+.+..+ |.
T Consensus 6 ~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~-d~ 72 (181)
T PF01728_consen 6 AFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQG-DI 72 (181)
T ss_dssp HHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTG-GG
T ss_pred HHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeec-cc
Confidence 356777788877 5554 899999999999999999874 479999999876 011 23455455 54
Q ss_pred cccCc-CCccc-cC--CCcccEEEEchhhHhhCh---------hcHHHHHHHHHhccccCceEEEEcC
Q 047022 245 NCLKP-TNMTE-LF--LGNFSTVFICGMIEAVGH---------DYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 245 ~~l~~-~~l~~-~~--~~~fD~Ivs~~~l~~~~~---------~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+... ..+.. +. .++||+|+|-.+....+. +-....+.-+.+.|+|||.+++...
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 33210 00111 11 268999999873322221 1233455666788999999777653
No 223
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=76.47 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=95.9
Q ss_pred CcccccccccCCCCceeecccCCCCCCHHHHHHHHHHHHHH-HcC-CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEc
Q 047022 138 SNELFFFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIE-KVK-LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGIT 214 (381)
Q Consensus 138 ~~~~~y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~-~l~-~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvD 214 (381)
-.+. +++++|...+||.- .+.+..+.++- .+. ++.-.+||-+|.|.|--+.++.+.++ .+++-+|
T Consensus 253 ~g~d-~rLYldG~LQfsTr-----------De~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVd 320 (508)
T COG4262 253 RGDD-LRLYLDGGLQFSTR-----------DEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVD 320 (508)
T ss_pred ecCc-eEEEEcCceeeeec-----------hhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEe
Confidence 3556 78888888888643 11222222221 111 23446899999999999999999874 5899999
Q ss_pred CCHHHHHHHHHHH--HH--cC-C-CCCeEEEEecCccccCcCCccccCCCcccEEEEch------hhHhhChhcHHHHHH
Q 047022 215 LSELQLKYAEIKV--KE--AG-L-QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICG------MIEAVGHDYMEELFS 282 (381)
Q Consensus 215 is~~~~~~a~~~~--~~--~g-l-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~------~l~~~~~~~~~~~l~ 282 (381)
++|.|++.+++.. .. .| + .+|+++... |+.+.-. -..+.||.||... ++..+ +-.++..
T Consensus 321 LDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d-DAf~wlr-----~a~~~fD~vIVDl~DP~tps~~rl---YS~eFY~ 391 (508)
T COG4262 321 LDPRMIELASHATVLRALNQGSFSDPRVTVVND-DAFQWLR-----TAADMFDVVIVDLPDPSTPSIGRL---YSVEFYR 391 (508)
T ss_pred cCHHHHHHhhhhhHhhhhccCCccCCeeEEEec-cHHHHHH-----hhcccccEEEEeCCCCCCcchhhh---hhHHHHH
Confidence 9999999998432 21 11 1 357888888 8766531 1346899999752 22211 3357888
Q ss_pred HHHhccccCceEEEEcCC
Q 047022 283 CCESLLAENGLSCSTVPD 300 (381)
Q Consensus 283 ~~~~~LkpgG~~~i~~~~ 300 (381)
-+.+.|+++|.+++....
T Consensus 392 ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 392 LLSRHLAETGLMVVQAGS 409 (508)
T ss_pred HHHHhcCcCceEEEecCC
Confidence 999999999998876544
No 224
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.11 E-value=5.4e-05 Score=71.19 Aligned_cols=119 Identities=17% Similarity=0.087 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.+..+...+..-...+|||+|||+|..+..+.... -.+++++|.|+.|++.++................. ...+..
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~ 98 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRV-LYRDFL 98 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhh-hhcccc
Confidence 344444444433345699999999998766555442 34799999999999999887654321111111111 111111
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.....|+|++.++|..++......+++.+.+.+.+ .+++.-|
T Consensus 99 -------~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 99 -------PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred -------cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 12344999999999999876677788888777766 5555443
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.09 E-value=7.9e-05 Score=66.68 Aligned_cols=146 Identities=12% Similarity=0.081 Sum_probs=90.1
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.+++|.+||-+|+.+|+...+++.- +...|.+++.|+...+..-..++.. .||--+.. |++... ....+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~-DAr~P~--~Y~~l 140 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILE-DARHPE--KYRML 140 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES--TTSGG--GGTTT
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeec-cCCChH--Hhhcc
Confidence 4567889999999999999999999876 4579999999996655444444333 57888888 887532 22112
Q ss_pred CCCcccEEEEchhhHhhC-hhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHH
Q 047022 256 FLGNFSTVFICGMIEAVG-HDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMT 334 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~ 334 (381)
-+.+|+|++. +. +++..-+..++...||+||.+++......-+........ ..+.++.+.
T Consensus 141 -v~~VDvI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~v-------------f~~e~~~L~ 201 (229)
T PF01269_consen 141 -VEMVDVIFQD-----VAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEV-------------FAEEVKKLK 201 (229)
T ss_dssp -S--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHH-------------HHHHHHHHH
T ss_pred -cccccEEEec-----CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHH-------------HHHHHHHHH
Confidence 3589999997 32 245667788899999999998877532211111111111 112235555
Q ss_pred hcCCcEEEEEEecch
Q 047022 335 SSSRLCVEHLENIET 349 (381)
Q Consensus 335 ~~~Gf~v~~~~~~~~ 349 (381)
+ .||++.+..++.+
T Consensus 202 ~-~~~~~~e~i~LeP 215 (229)
T PF01269_consen 202 E-EGFKPLEQITLEP 215 (229)
T ss_dssp C-TTCEEEEEEE-TT
T ss_pred H-cCCChheEeccCC
Confidence 3 6999988777654
No 226
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.05 E-value=7.9e-05 Score=61.66 Aligned_cols=101 Identities=25% Similarity=0.291 Sum_probs=69.8
Q ss_pred EEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc--cCcCCccccCC-CcccE
Q 047022 188 VLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC--LKPTNMTELFL-GNFST 262 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~--l~~~~l~~~~~-~~fD~ 262 (381)
++|+|||.|... .++.... ..++++|+++.++..++......+.. .+.+... |... ++ +.. ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~------~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVA-DALGGVLP------FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEe-ccccCCCC------CCCCCceeE
Confidence 999999999976 3333322 48999999999999855544321111 1677777 7665 44 333 48999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+.+....++.. ....+.++.+.|+|+|.+++....
T Consensus 123 ~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 123 VISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 94444444442 688999999999999998776654
No 227
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.04 E-value=2.3e-05 Score=76.39 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
...++.+++.+...++ +|||+-||.|.+++.+|+. ..+|+|+|+++++++.|++++..+++. +++|..+ +..++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~-~~~~~ 256 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRG-DAEDF 256 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE---SHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEe-eccch
Confidence 4556777888887766 8999999999999999985 779999999999999999999999985 8999988 77654
No 228
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.04 E-value=1.3e-05 Score=71.27 Aligned_cols=124 Identities=14% Similarity=0.089 Sum_probs=85.4
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
.++|||||=+....+.- ..-..|+.||+++. .-.+.++ |+.+.|.+ ..+.++||+|++
T Consensus 53 lrlLEVGals~~N~~s~--~~~fdvt~IDLns~----------------~~~I~qq-DFm~rplp---~~~~e~FdvIs~ 110 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SGWFDVTRIDLNSQ----------------HPGILQQ-DFMERPLP---KNESEKFDVISL 110 (219)
T ss_pred ceEEeecccCCCCcccc--cCceeeEEeecCCC----------------CCCceee-ccccCCCC---CCcccceeEEEE
Confidence 69999999654433221 12346999999874 2345677 88877521 134689999999
Q ss_pred chhhHhhCh-hcHHHHHHHHHhccccCce-----EEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCc
Q 047022 266 CGMIEAVGH-DYMEELFSCCESLLAENGL-----SCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRL 339 (381)
Q Consensus 266 ~~~l~~~~~-~~~~~~l~~~~~~LkpgG~-----~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf 339 (381)
+.++..+|+ ...-+.++.+++.|+|+|. +++..|...... ....+...+ ..+.+..||
T Consensus 111 SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~N---------------SRy~~~~~l-~~im~~LGf 174 (219)
T PF11968_consen 111 SLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTN---------------SRYMTEERL-REIMESLGF 174 (219)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhc---------------ccccCHHHH-HHHHHhCCc
Confidence 999999984 3566899999999999999 999888754211 112233334 444456899
Q ss_pred EEEEEEec
Q 047022 340 CVEHLENI 347 (381)
Q Consensus 340 ~v~~~~~~ 347 (381)
..+..+..
T Consensus 175 ~~~~~~~~ 182 (219)
T PF11968_consen 175 TRVKYKKS 182 (219)
T ss_pred EEEEEEec
Confidence 98876543
No 229
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.00 E-value=4.2e-05 Score=72.26 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=90.6
Q ss_pred HHHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
.....+...++.+|||++++.|+-+.++++.. ...+++.|+++.-+...++++...|+. ++..... |.....+.
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~-D~~~~~~~-- 151 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINA-DARKLDPK-- 151 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEES-HHHHHHHH--
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEee-cccccccc--
Confidence 44556778899999999999999999999873 479999999999999999999999986 6777778 87766311
Q ss_pred cccCCCcccEEEE------chhhHhhCh--------------hcHHHHHHHHHhcc----ccCceEEEEcCC
Q 047022 253 TELFLGNFSTVFI------CGMIEAVGH--------------DYMEELFSCCESLL----AENGLSCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs------~~~l~~~~~--------------~~~~~~l~~~~~~L----kpgG~~~i~~~~ 300 (381)
.....||.|+. .+++..-++ .-..+.++.+.+.+ ||||+++.++..
T Consensus 152 --~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 152 --KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp --HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred --ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 12346999996 222222211 11346889999999 999998887754
No 230
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.00 E-value=3.1e-06 Score=74.08 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=72.6
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
..++||+|+|.|..+..++.. -.+|.++++|..|....+++ + -.+....++.+ .+-+||+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~~~ew~~---------t~~k~dli~ 174 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLTEIEWLQ---------TDVKLDLIL 174 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceeeehhhhh---------cCceeehHH
Confidence 469999999999999998874 44789999999998877664 2 22222112222 225799999
Q ss_pred EchhhHhhChhcHHHHHHHHHhcccc-CceEEE--EcCCCCCC
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAE-NGLSCS--TVPDQCYD 304 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~Lkp-gG~~~i--~~~~~~~~ 304 (381)
|.+.+... .++-.+++.++.+|+| +|++++ ..|-..|-
T Consensus 175 clNlLDRc--~~p~kLL~Di~~vl~psngrvivaLVLP~~hYV 215 (288)
T KOG3987|consen 175 CLNLLDRC--FDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYV 215 (288)
T ss_pred HHHHHHhh--cChHHHHHHHHHHhccCCCcEEEEEEeccccee
Confidence 99998866 4678999999999999 898554 34444443
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.92 E-value=0.00027 Score=63.43 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=67.4
Q ss_pred EEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccccCCCcccEEEE
Q 047022 188 VLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~~~~~fD~Ivs 265 (381)
|.||||--|.+.++++++. ..+++++|+++.-++.|++++...++.++|+++.+ |..+ ++ +.+..|.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlg-dGL~~l~-------~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLG-DGLEVLK-------PGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE--SGGGG---------GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEEC-CcccccC-------CCCCCCEEEE
Confidence 6899999999999999972 23799999999999999999999999999999999 8544 44 2233788888
Q ss_pred chhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 266 CGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 266 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+|=.. -....++.....++..-.+++
T Consensus 73 AGMGG~----lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 73 AGMGGE----LIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EEE-HH----HHHHHHHHTGGGGTT--EEEE
T ss_pred ecCCHH----HHHHHHHhhHHHhccCCeEEE
Confidence 765433 356667666666654444444
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.89 E-value=8.2e-05 Score=69.55 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.+..+.+++.+.+.++..|||||+|.|.++..+++. +.+++++|+++...+..+++.. ..++++++.+ |+.++..
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~-D~l~~~~ 90 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVING-DFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES--TTTSCG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeec-chhcccc
Confidence 455678999999889999999999999999999986 6899999999999999988765 2368999999 9988762
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHh
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCES 286 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~ 286 (381)
.. ........|+++--. ++ -..++.++..
T Consensus 91 ~~---~~~~~~~~vv~NlPy-~i----s~~il~~ll~ 119 (262)
T PF00398_consen 91 YD---LLKNQPLLVVGNLPY-NI----SSPILRKLLE 119 (262)
T ss_dssp GG---HCSSSEEEEEEEETG-TG----HHHHHHHHHH
T ss_pred HH---hhcCCceEEEEEecc-cc----hHHHHHHHhh
Confidence 10 001345677776332 22 2455555555
No 233
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.89 E-value=6.1e-05 Score=69.59 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCC-CCCEEEEecCCc--hHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe
Q 047022 167 VGQIRKVSVLIEKVKLV-KGQEVLEIGCGW--GTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV 241 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~-~~~~VLDiGcG~--G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~ 241 (381)
.+.+..+.+.++.+.-. .-...||||||- -....++|+. ++++|+-+|.+|-.+..++..+....- .+..++.+
T Consensus 50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~a 128 (267)
T PF04672_consen 50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQA 128 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeC
Confidence 34455566666665444 235799999994 4456667766 889999999999999999988765421 23789999
Q ss_pred cCccccCc----CCccc-cCCCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCCCCCCCC--CCchhhh
Q 047022 242 ITVNCLKP----TNMTE-LFLGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPDQCYDEH--SLGPGFI 313 (381)
Q Consensus 242 ~d~~~l~~----~~l~~-~~~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~--~~~~~~i 313 (381)
|.++... ..... +..++-=.++.+.+++|+++ +++..+++.+...|.||.+++|+......... ......+
T Consensus 129 -D~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~ 207 (267)
T PF04672_consen 129 -DLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVY 207 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHH
T ss_pred -CCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 9887420 00000 11122335778889999987 68999999999999999999998654432111 0111112
Q ss_pred hhhccCCCCCCCHHHHHHHHHhcCCcEEEE
Q 047022 314 KEYIFPSGCLPSLRRVTSAMTSSSRLCVEH 343 (381)
Q Consensus 314 ~~yi~pgg~lp~~~~~~~~l~~~~Gf~v~~ 343 (381)
.+- .....+.+.+++ ..+. .||++++
T Consensus 208 ~~~-~~~~~~Rs~~ei-~~~f--~g~elve 233 (267)
T PF04672_consen 208 AQA-GSPGRPRSREEI-AAFF--DGLELVE 233 (267)
T ss_dssp HHC-CS----B-HHHH-HHCC--TTSEE-T
T ss_pred HcC-CCCceecCHHHH-HHHc--CCCccCC
Confidence 211 112345566666 4554 3888753
No 234
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=6.8e-05 Score=65.43 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=86.4
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+.=..-.|.+|||+|+|+|-.++..++.....|+..|+.+......+-+++.+|+. |.+... |.-.-
T Consensus 71 i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~-d~~g~-------- 139 (218)
T COG3897 71 IDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHA-DLIGS-------- 139 (218)
T ss_pred HhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeec-cccCC--------
Confidence 3333334468999999999999999998863347899999999888888888888864 777777 66542
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCCCCCCCCCCchhhhhhhc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPDQCYDEHSLGPGFIKEYI 317 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~~~~~~~~~~~~~i~~yi 317 (381)
+..||+|+...++..- .....++. +.+.|+..|. +++..|.+.|-.. +...+...|-
T Consensus 140 -~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~lpk-~~l~~~a~yq 197 (218)
T COG3897 140 -PPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVLVGDPGRAYLPK-KRLEFLAIYQ 197 (218)
T ss_pred -CcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEEEeCCCCCCCch-hhhhhhhhcc
Confidence 3789999998876543 23355555 5666666666 6666665554332 2344444443
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00016 Score=63.94 Aligned_cols=117 Identities=15% Similarity=0.046 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.++.+.+...-..+|.+||+||-|-|.....+-+++..+=..|+..|+.++..+...-. -.++|-+..+ -+++.-+
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g-~WeDvl~- 163 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEG-RWEDVLN- 163 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEec-chHhhhc-
Confidence 33333333333367889999999999988888776566677899999988777665321 1246777777 7766542
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.++++.||-|+---.-++. ++...+.+.+.++|||+|++-.
T Consensus 164 ---~L~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 164 ---TLPDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ---cccccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 2567889999987655776 6788899999999999998544
No 236
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.82 E-value=3.2e-05 Score=66.84 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=78.4
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+.+.|+|+|+|.++..++.. ..+|++++.+|...+.|.+++.-.|. .+++++.+ |+++.. | ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~g-DA~~y~------f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVG-DARDYD------F--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEec-cccccc------c--cccceeHH
Confidence 68999999999999988885 67999999999999999999766666 48999999 999887 3 56788877
Q ss_pred chhhH-hhChhcHHHHHHHHHhccccCceEE
Q 047022 266 CGMIE-AVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 266 ~~~l~-~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
- |+. .+-.+....+++.+.+.||-++.++
T Consensus 103 E-mlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 E-MLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred H-HhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 4 433 2333445678888888999998843
No 237
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00052 Score=60.28 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=97.3
Q ss_pred HHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+.+++|++||=+|+.+|+...+++.-.+ ..+.+++.|+......-..+... .|+--+.. |++... ..+ .-
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~-DA~~P~--~Y~-~~ 142 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILE-DARKPE--KYR-HL 142 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeec-ccCCcH--Hhh-hh
Confidence 446688999999999999999999887633 68999999998776655555443 47878888 886532 111 12
Q ss_pred CCcccEEEEchhhHhhCh-hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHh
Q 047022 257 LGNFSTVFICGMIEAVGH-DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTS 335 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~ 335 (381)
-+..|+|++- +.. .+..-+..++...||+||.+++..-...-+........+ .+.++.+.+
T Consensus 143 Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf-------------~~ev~kL~~ 204 (231)
T COG1889 143 VEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVF-------------KDEVEKLEE 204 (231)
T ss_pred cccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHH-------------HHHHHHHHh
Confidence 2568999986 432 345667788999999999877765443322222111111 122355554
Q ss_pred cCCcEEEEEEecch
Q 047022 336 SSRLCVEHLENIET 349 (381)
Q Consensus 336 ~~Gf~v~~~~~~~~ 349 (381)
.+|++.+..++.+
T Consensus 205 -~~f~i~e~~~LeP 217 (231)
T COG1889 205 -GGFEILEVVDLEP 217 (231)
T ss_pred -cCceeeEEeccCC
Confidence 7899988776643
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00011 Score=65.39 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 170 IRKVSVLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 170 ~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
..|+.+|.++.. ++++.+|+|+||.+|+++..+++..+ ..|+++|+.|- ....++.++++ |++.
T Consensus 30 a~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~-d~~~ 96 (205)
T COG0293 30 AYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQG-DITD 96 (205)
T ss_pred HHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEee-eccC
Confidence 455667777765 46889999999999999999998844 45999999874 12235899999 8876
Q ss_pred cCcC-Cc-cccCCCcccEEEEchhh--------HhhChhc-HHHHHHHHHhccccCceEEEEc
Q 047022 247 LKPT-NM-TELFLGNFSTVFICGMI--------EAVGHDY-MEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 247 l~~~-~l-~~~~~~~fD~Ivs~~~l--------~~~~~~~-~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-+.. .+ ..+....+|+|+|-.+- .|.-..+ ...+++-+..+|+|||.+++..
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 4311 11 11234557999985432 3321111 2356677788999999977754
No 239
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.81 E-value=0.00024 Score=64.87 Aligned_cols=138 Identities=13% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++..+|+|||||.--++..+... ++..++|+||+..+++.........+.+ .++... |...-+ +....|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~-Dl~~~~-------~~~~~D 173 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVR-DLLSDP-------PKEPAD 173 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE--TTTSH-------TTSEES
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEe-eeeccC-------CCCCcc
Confidence 35689999999999998877655 5689999999999999999998887754 777777 776554 447899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHHHHHHhcCCcEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVTSAMTSSSRLCV 341 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~~~l~~~~Gf~v 341 (381)
+.+..-+++-+........++-+..+=.| .++|+.|......- ..|+.++-++.++.+....|..+
T Consensus 174 laLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL~gR------------~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 174 LALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSLGGR------------NKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp EEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES-------------------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred hhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEeccccccccC------------ccccccCHHHHHHHhcccCCcee
Confidence 99998877777433333333333333222 37778876442211 11344455556677766667775
Q ss_pred EEE
Q 047022 342 EHL 344 (381)
Q Consensus 342 ~~~ 344 (381)
...
T Consensus 240 ~~~ 242 (251)
T PF07091_consen 240 DRL 242 (251)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.79 E-value=0.00017 Score=67.37 Aligned_cols=105 Identities=20% Similarity=0.262 Sum_probs=66.3
Q ss_pred CEEEEecCCchHHH-HHHHHh--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGWGTLA-IEIVRQ--TGCKYTGITLSELQLKYAEIKVK-EAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~G~~~-~~la~~--~~~~v~gvDis~~~~~~a~~~~~-~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+|+=||||.=.++ +.++++ .+..|+++|++++..+.+++.+. ..++..+++|+.+ |..+.+ .....||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~-d~~~~~------~dl~~~D 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITA-DVLDVT------YDLKEYD 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES--GGGG-------GG----S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEec-chhccc------cccccCC
Confidence 59999999975555 445544 36789999999999999999887 5677789999999 987765 2336899
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+...... +..++..++++.+.+.++||..+++-.
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 998865544 222467899999999999999877753
No 241
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00021 Score=64.45 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
-|+...++...+. ++..+||||+.||+++..+.++...+|+++|....|+..--+. .+++.....+|++.+.+
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH
Confidence 4555666666654 6789999999999999999997345899999999887754332 24666555448888875
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. ..+..|+|+|--++-.+ ...+..+..+++|+|.++.-+
T Consensus 139 ~~----~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 139 ED----FTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HH----cccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEEEe
Confidence 43 22478999998666544 788999999999999855443
No 242
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00014 Score=61.49 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=94.9
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEecCccccCcC
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQ--DTSDYIFVITVNCLKPT 250 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~--~~i~~~~~~d~~~l~~~ 250 (381)
.+++..+.-.|.+|||+|.|- |-.++.+|.+ +...|..+|-+++.++..++....+-.. +++..... +...-..
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw-~~~~aqs- 97 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW-LIWGAQS- 97 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHH-HHhhhHH-
Confidence 334443334578999999995 5555566655 6678999999999998888766543221 12222222 1111110
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHH
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
......||.|++..++..- +....+.+.+.++|+|.|..++..|.+. -++..+.
T Consensus 98 ---q~eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~fsPRRg---------------------~sL~kF~ 151 (201)
T KOG3201|consen 98 ---QQEQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLFSPRRG---------------------QSLQKFL 151 (201)
T ss_pred ---HHhhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEecCccc---------------------chHHHHH
Confidence 0123589999998877543 5568899999999999999666655432 1233344
Q ss_pred HHHHhcCCcEEEEEEecchhHHHHHHHHHHHH
Q 047022 331 SAMTSSSRLCVEHLENIETHYYQKLRRWRQKF 362 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y~~tl~~W~~~f 362 (381)
.... ..||.+.-.+ +|..++..-..++
T Consensus 152 de~~-~~gf~v~l~e----nyde~iwqrh~~L 178 (201)
T KOG3201|consen 152 DEVG-TVGFTVCLEE----NYDEAIWQRHGRL 178 (201)
T ss_pred HHHH-hceeEEEecc----cHhHHHHHHHHHH
Confidence 4444 4799986554 4444444433333
No 243
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.71 E-value=0.0003 Score=72.39 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=54.7
Q ss_pred CCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+|||.|||+|.+...++.+. ...++|+|+++..+..++.++...+. ..+.+... |....... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~-d~l~~~~~-~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINF-NSLSYVLL-NIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeec-cccccccc-ccc
Confidence 34699999999999999888652 14789999999999999998876541 13455555 43321100 000
Q ss_pred cCCCcccEEEEch
Q 047022 255 LFLGNFSTVFICG 267 (381)
Q Consensus 255 ~~~~~fD~Ivs~~ 267 (381)
...+.||+|+++-
T Consensus 108 ~~~~~fD~IIgNP 120 (524)
T TIGR02987 108 SYLDLFDIVITNP 120 (524)
T ss_pred cccCcccEEEeCC
Confidence 1236899999854
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.70 E-value=0.00025 Score=67.65 Aligned_cols=98 Identities=12% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHHHHcC--------CCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC
Q 047022 172 KVSVLIEKVK--------LVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT 243 (381)
Q Consensus 172 ~~~~l~~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d 243 (381)
|+..++.... +.+|.++|||||++|+++..++++ |.+|++||..+ +.. .+.. .++|+.... |
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~---~~~V~h~~~-d 260 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD---TGQVEHLRA-D 260 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC---CCCEEEEec-c
Confidence 4555555443 358999999999999999999996 88999999654 222 1211 247888888 6
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
.....+ ..+.+|.++|--+ ..+....+-+.+.|..|
T Consensus 261 ~fr~~p------~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 261 GFKFRP------PRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357)
T ss_pred CcccCC------CCCCCCEEEEecc------cCHHHHHHHHHHHHhcC
Confidence 544432 2478999999732 35678888888888776
No 245
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.63 E-value=0.0002 Score=60.16 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred EEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 187 EVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
++||||||.|..+..+++. ++.+++++|+++.+.+.+++++..+++. ++++... ...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~-al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNA-AVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEe-eeeC
Confidence 4899999999999999887 4458999999999999999999888775 5888877 5544
No 246
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=5.9e-05 Score=63.25 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=45.4
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYD 304 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~ 304 (381)
|.+++.|+|.+..++||+.-+.-..++++|++.|||||++-+++|+..+.
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 67799999999999999987778899999999999999999999986653
No 247
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=9.8e-05 Score=73.23 Aligned_cols=99 Identities=19% Similarity=0.242 Sum_probs=75.3
Q ss_pred cccccCCCCceeeccc-CCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHH
Q 047022 143 FFLFLDKSMTYSCAIF-KSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLK 221 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~-~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~ 221 (381)
++..++-+...|++-| .... .+....+..+-+.+.++.+..+||+.||+|.+++.+++. -.+|+|++++++.++
T Consensus 345 ~E~l~~ltF~iSp~AFFQ~Nt----~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~ 419 (534)
T KOG2187|consen 345 TESLLGLTFRISPGAFFQTNT----SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVE 419 (534)
T ss_pred EeecCCeEEEECCchhhccCc----HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcc
Confidence 5555555555554333 2221 122233445667788889999999999999999999985 679999999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 222 YAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 222 ~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
.|+.++..+|+. +.+|+++ -++++-
T Consensus 420 dA~~nA~~Ngis-Na~Fi~g-qaE~~~ 444 (534)
T KOG2187|consen 420 DAEKNAQINGIS-NATFIVG-QAEDLF 444 (534)
T ss_pred hhhhcchhcCcc-ceeeeec-chhhcc
Confidence 999999999997 8999999 777764
No 248
>PRK10742 putative methyltransferase; Provisional
Probab=97.57 E-value=0.00029 Score=64.49 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=73.8
Q ss_pred HHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEecC
Q 047022 174 SVLIEKVKLVKGQ--EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA------G--LQDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~------g--l~~~i~~~~~~d 243 (381)
+.+++.+.+++|. +|||+-+|+|..++.++.. |++|+++|-++......++.+... + +..+++++.+ |
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~-d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA-S 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC-c
Confidence 5788888889988 9999999999999999996 999999999999999888887764 2 2247888888 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
..+.-.. ...+||+|+.--|+.|-
T Consensus 154 a~~~L~~-----~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 154 SLTALTD-----ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHHhh-----CCCCCcEEEECCCCCCC
Confidence 7665311 22479999987777663
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.54 E-value=2.5e-05 Score=62.32 Aligned_cols=100 Identities=22% Similarity=0.168 Sum_probs=44.7
Q ss_pred EEecCCchHHHHHHHHh--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 189 LEIGCGWGTLAIEIVRQ--TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 189 LDiGcG~G~~~~~la~~--~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
||||+..|..+..+++. .+ .+++++|..+. .+.+++.+++.++.+++++..+ +..+.-+ .+..++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g-~s~~~l~----~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQG-DSPDFLP----SLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES--THHHHH----HHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEc-CcHHHHH----HcCCCCEEEEE
Confidence 69999999888887764 22 37999999985 3344455555677778999999 8765421 13347899999
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.-..-.. +.....++.+.+.|+|||.+++.
T Consensus 75 iDg~H~~---~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 75 IDGDHSY---EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EES---H---HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred ECCCCCH---HHHHHHHHHHHHHcCCCeEEEEe
Confidence 8753111 23467788999999999998764
No 250
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.52 E-value=0.00044 Score=65.54 Aligned_cols=92 Identities=12% Similarity=0.208 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
.++.+++.+.++++..++|.-||.|+.+..+++. ++++|+|+|.++.+++.+++++... .++++++.+ ++.++..
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~-nF~~l~~- 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHD-NFANFFE- 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeC-CHHHHHH-
Confidence 3567788888889999999999999999999987 3589999999999999999988653 358999999 9887641
Q ss_pred CccccCCCcccEEEEch
Q 047022 251 NMTELFLGNFSTVFICG 267 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~ 267 (381)
.+......++|.|+...
T Consensus 84 ~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 84 HLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHhcCCCcccEEEEec
Confidence 11112335799988753
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.45 E-value=0.0015 Score=58.38 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=80.7
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+..+.+.+. .+.++.||||--+.+.+++.+. ....+++.|+++.-++.|.+++...++.++++...+ |....-
T Consensus 7 L~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~-dgl~~l--- 80 (226)
T COG2384 7 LTTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLG-DGLAVL--- 80 (226)
T ss_pred HHHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEecc-CCcccc---
Confidence 444555543 5667999999999999999987 456899999999999999999999999999999999 873322
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcccc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAE 290 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkp 290 (381)
..++.+|.|+..+|=... ....+++-.+.|+.
T Consensus 81 ---~~~d~~d~ivIAGMGG~l----I~~ILee~~~~l~~ 112 (226)
T COG2384 81 ---ELEDEIDVIVIAGMGGTL----IREILEEGKEKLKG 112 (226)
T ss_pred ---CccCCcCEEEEeCCcHHH----HHHHHHHhhhhhcC
Confidence 134589999988764433 45666666665553
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.41 E-value=0.026 Score=51.40 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred CCCCEEEEecCCchHHHHHHHH-hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVR-QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~-~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
-.|.+||-+|=..- .++.++. ....+|+.+|+++..+++.++.++..|++ |+.... |.++.-|+. ..++||
T Consensus 43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~-DlR~~LP~~----~~~~fD 114 (243)
T PF01861_consen 43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHY-DLRDPLPEE----LRGKFD 114 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE----TTS---TT----TSS-BS
T ss_pred ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEe-cccccCCHH----HhcCCC
Confidence 35789999996653 2333333 25779999999999999999999999986 999999 998764332 348999
Q ss_pred EEEEc--hhhHhhChhcHHHHHHHHHhccccCc-eEEEEc
Q 047022 262 TVFIC--GMIEAVGHDYMEELFSCCESLLAENG-LSCSTV 298 (381)
Q Consensus 262 ~Ivs~--~~l~~~~~~~~~~~l~~~~~~LkpgG-~~~i~~ 298 (381)
++++. +.++ ...-++.+....||..| ..+++.
T Consensus 115 ~f~TDPPyT~~-----G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 115 VFFTDPPYTPE-----GLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp EEEE---SSHH-----HHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EEEeCCCCCHH-----HHHHHHHHHHHHhCCCCceEEEEE
Confidence 99995 2333 34788999999998777 455554
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.36 E-value=9.9e-05 Score=65.50 Aligned_cols=104 Identities=18% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
....|+|.-||.|+.++..+.+ ++.|+++|++|.-+..|+.+++-.|++++|+|+++ |+.++-.. + .+....+|+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G-D~ld~~~~-l-q~~K~~~~~v 169 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICG-DFLDLASK-L-KADKIKYDCV 169 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEec-hHHHHHHH-H-hhhhheeeee
Confidence 3458999999999999999885 99999999999999999999999999999999999 99876411 0 0112234455
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
+-+.-. -++.....-+-.+...+.|.|.
T Consensus 170 f~sppw--ggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 170 FLSPPW--GGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ecCCCC--CCcchhhhhhhhhhhhcchhHH
Confidence 543211 1122333334445556666654
No 254
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.31 E-value=0.0022 Score=60.52 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=50.9
Q ss_pred CCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCcc-ccCcCCccccCCCccc
Q 047022 185 GQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVN-CLKPTNMTELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~-~l~~~~l~~~~~~~fD 261 (381)
..++||||||.. ...+..++.++.+++|+|+++..++.|++++..+ ++.++|+++.. .-. .+- ..+ ....+.||
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~-~~~~~i~-~~i-~~~~e~~d 179 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ-KNPDNIF-DGI-IQPNERFD 179 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE---ST-SST-TTS-TT--S-EE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc-CCccccc-hhh-hcccceee
Confidence 458999999975 4444445558999999999999999999999999 99999999876 322 221 000 01336899
Q ss_pred EEEEchhhHhh
Q 047022 262 TVFICGMIEAV 272 (381)
Q Consensus 262 ~Ivs~~~l~~~ 272 (381)
+.+|+--++.-
T Consensus 180 ftmCNPPFy~s 190 (299)
T PF05971_consen 180 FTMCNPPFYSS 190 (299)
T ss_dssp EEEE-----SS
T ss_pred EEecCCccccC
Confidence 99998666544
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.29 E-value=0.0013 Score=63.02 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
++..+++||++|+-+|+| .|.++.++|+..+++|+++|.|++-.+.|++.-. -.++...|-.... .
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~-----~- 225 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALE-----A- 225 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhH-----H-
Confidence 455678899999999997 4789999999889999999999999998887632 2223220111111 0
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-.+.||+|+..-. ...+....+.|++||++++..
T Consensus 226 ~~~~~d~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 226 VKEIADAIIDTVG---------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred hHhhCcEEEECCC---------hhhHHHHHHHHhcCCEEEEEC
Confidence 1134999998722 445667788999999966543
No 256
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0057 Score=57.35 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=89.3
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC-------------------------------
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ------------------------------- 233 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~------------------------------- 233 (381)
.-+||--|||.|.++..++.. |..+-|-+.|--|+-...=.+..-..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 458999999999999999984 777777788776653222111000001
Q ss_pred --------CCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCC
Q 047022 234 --------DTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDE 305 (381)
Q Consensus 234 --------~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~ 305 (381)
+....-.+ |+.+.-++. -..+.||+|+.++.+... .|.-++++.+..+|||||+.+=..| -.|..
T Consensus 230 p~~~~~~~~~fsicaG-DF~evy~~s---~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGP-LlYHF 302 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAG-DFLEVYGTS---SGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGP-LLYHF 302 (369)
T ss_pred ccccCCCCCCcccccc-ceeEEecCc---CCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccc-eeeec
Confidence 11111223 333332110 122579999998766655 6789999999999999998442222 11111
Q ss_pred CCCchhhhhhhccC-CCCCCCHHHHHHHHHhcCCcEEEEEEecchhHH
Q 047022 306 HSLGPGFIKEYIFP-SGCLPSLRRVTSAMTSSSRLCVEHLENIETHYY 352 (381)
Q Consensus 306 ~~~~~~~i~~yi~p-gg~lp~~~~~~~~l~~~~Gf~v~~~~~~~~~y~ 352 (381)
... ... .+ .+.-++.+++.. +.+..||++++.+.+...|.
T Consensus 303 ~d~-~g~-----~~~~siEls~edl~~-v~~~~GF~~~ke~~Idt~Y~ 343 (369)
T KOG2798|consen 303 EDT-HGV-----ENEMSIELSLEDLKR-VASHRGFEVEKERGIDTTYG 343 (369)
T ss_pred cCC-CCC-----cccccccccHHHHHH-HHHhcCcEEEEeeeeecccC
Confidence 000 000 00 023356667644 44568999998887766664
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.25 E-value=0.0007 Score=56.56 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=59.7
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhCh---------hcHHH
Q 047022 209 KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH---------DYMEE 279 (381)
Q Consensus 209 ~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~---------~~~~~ 279 (381)
+|.++||.++.++..++++.+.++.++++++.. .-+.+.. ..+.+++|+|+.+. -++|. +....
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~-sHe~l~~----~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILD-SHENLDE----YIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES--GGGGGG----T--S--EEEEEEEE--SB-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEEC-CHHHHHh----hCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHH
Confidence 589999999999999999999999889999998 7776651 11224899988763 23332 23457
Q ss_pred HHHHHHhccccCceEEEEc
Q 047022 280 LFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 280 ~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.+.++|+|||.+.+..
T Consensus 74 Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEEE
Confidence 8899999999999987765
No 258
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.23 E-value=0.0031 Score=61.31 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=86.2
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+.++||.||||..|..|+=+.++|.- -...|++.|.+.+-++..++++...|+. +.-+... |..+++.. .
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~-D~~ef~~~---~ 308 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNY-DGREFPEK---E 308 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEcc-Cccccccc---c
Confidence 34466789999999999999888887765 2358999999999999999999999975 5555566 66665421 1
Q ss_pred cCCCcccEEEE----ch--hh----------------HhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 255 LFLGNFSTVFI----CG--MI----------------EAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 255 ~~~~~fD~Ivs----~~--~l----------------~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
++ ++||.|+. ++ ++ .+. .-..++|.....+++|||+++.++..-.
T Consensus 309 ~~-~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~--~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 309 FP-GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYA--HLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cC-cccceeeecCCCCCCcccccccccccchhHHHHHHhH--HHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 33 48999984 32 11 111 1245788889999999999988876544
No 259
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.0015 Score=64.77 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCCC-EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 183 VKGQ-EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 183 ~~~~-~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.. ++|.+|||.-.++..+-+..-..|+.+|+|+..++....+-.. -..-+.+... |...+. |++.+||
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~-d~~~l~------fedESFd 116 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEM-DMDQLV------FEDESFD 116 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc--CCcceEEEEe-cchhcc------CCCccee
Confidence 3555 9999999999999888775334799999999888877665432 1235788888 998887 7889999
Q ss_pred EEEEchhhHhhChh--------cHHHHHHHHHhccccCce-EEEEc
Q 047022 262 TVFICGMIEAVGHD--------YMEELFSCCESLLAENGL-SCSTV 298 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~--------~~~~~l~~~~~~LkpgG~-~~i~~ 298 (381)
+|+..+.+.++-.. .....+.+++++|+|||+ +.++.
T Consensus 117 iVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 117 IVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999988877422 134568899999999999 34444
No 260
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.15 E-value=0.0037 Score=54.67 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhc--CCEEEEEcCCHHHHH------HHHHHHHHcCCCCCeEEEEecCcccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT--GCKYTGITLSELQLK------YAEIKVKEAGLQDTSDYIFVITVNCL 247 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvDis~~~~~------~a~~~~~~~gl~~~i~~~~~~d~~~l 247 (381)
++....++||++|+|+=.|.|.++..++... ...|++.-..+...- ..+....+. ...+++.+.. +...+
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-~~aN~e~~~~-~~~A~ 117 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-VYANVEVIGK-PLVAL 117 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-hhhhhhhhCC-ccccc
Confidence 4555668999999999999999999998763 346666554433110 011111111 1124444444 33333
Q ss_pred CcCCccccCCCcccEEEEchhhH--h---hChhcHHHHHHHHHhccccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIE--A---VGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~--~---~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. ..+..|++.....-+ | +.......+.+.+++.|||||.+.+..
T Consensus 118 ~-------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 118 G-------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred C-------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 224555555422111 1 113457789999999999999977653
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.0038 Score=52.12 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+.++.++..+.-.+..+.+|+|+|.|......++. | ...+|+++++-.+.+++-+.-..|+..+..|... |..+.+
T Consensus 59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rk-dlwK~d- 135 (199)
T KOG4058|consen 59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRK-DLWKVD- 135 (199)
T ss_pred HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhh-hhhhcc-
Confidence 44556677777677679999999999999999886 5 5789999999999999999888899888999988 887765
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+ ..|.-|+..++=.-+ ..+-.++..-+..|..++..
T Consensus 136 -----l--~dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 136 -----L--RDYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -----c--cccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEE
Confidence 2 345545444322222 33334455556666665544
No 262
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.03 E-value=0.0016 Score=57.31 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEecCccccCcCCccccC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAG------LQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~g------l~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.|||||-|++...++.. ++.-+.|.+|-...-++.++++.... ...++.+... +....-|. .|.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~-namk~lpn---~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRT-NAMKFLPN---FFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeec-cchhhccc---hhh
Confidence 3357899999999999999987 77789999999999999999887654 1234555555 44332211 122
Q ss_pred CCcccEEEEchhhHhhChh------cHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGMIEAVGHD------YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.++.+..+...-=.|+-.. -...++.+..-+|++||.++..+
T Consensus 136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 3344444433222222110 12357788889999999977654
No 263
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.01 E-value=0.02 Score=56.10 Aligned_cols=156 Identities=11% Similarity=0.108 Sum_probs=88.6
Q ss_pred CCEEEEecCCchHHHHHHHHh----------------cCCEEEEEcCCHHHHHHHHHHHHH---------cCC---CCCe
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ----------------TGCKYTGITLSELQLKYAEIKVKE---------AGL---QDTS 236 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~----------------~~~~v~gvDis~~~~~~a~~~~~~---------~gl---~~~i 236 (381)
..+|+|+|||+|..++.+... +..+|..-|+..+-....-+.+.. ..+ ..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 458999999999877665321 124666677654433332222211 000 0011
Q ss_pred EEEE---ecCccccCcCCccccCCCcccEEEEchhhHhhCh------------------------------------hcH
Q 047022 237 DYIF---VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH------------------------------------DYM 277 (381)
Q Consensus 237 ~~~~---~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~------------------------------------~~~ 277 (381)
-|.. + .+..-- |+.++.++++|..++|++.. +|+
T Consensus 144 ~f~~gvpG-SFY~RL------fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~ 216 (386)
T PLN02668 144 YFAAGVPG-SFYRRL------FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADL 216 (386)
T ss_pred eEEEecCc-cccccc------cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHH
Confidence 1222 2 222211 56789999999999888752 023
Q ss_pred HHHHHHHHhccccCceEEEEcCCCCCCCCC-C---chhh---------------------hhhhccCCCCCCCHHHHHHH
Q 047022 278 EELFSCCESLLAENGLSCSTVPDQCYDEHS-L---GPGF---------------------IKEYIFPSGCLPSLRRVTSA 332 (381)
Q Consensus 278 ~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~-~---~~~~---------------------i~~yi~pgg~lp~~~~~~~~ 332 (381)
..+|+.=.+-|+|||+++++....+..... . ...| +..+..|- +.|+.+|+.+.
T Consensus 217 ~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~-Y~ps~eEv~~~ 295 (386)
T PLN02668 217 AGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPV-YAPSLQDFKEV 295 (386)
T ss_pred HHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcc-cCCCHHHHHHH
Confidence 455666677899999988776543321111 0 0001 11222342 57999999888
Q ss_pred HHhcCCcEEEEEEecc
Q 047022 333 MTSSSRLCVEHLENIE 348 (381)
Q Consensus 333 l~~~~Gf~v~~~~~~~ 348 (381)
++++.-|.+.+++.+.
T Consensus 296 Ie~~gsF~I~~le~~~ 311 (386)
T PLN02668 296 VEANGSFAIDKLEVFK 311 (386)
T ss_pred HhhcCCEEeeeeEEee
Confidence 8877778888777544
No 264
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.01 E-value=0.011 Score=55.86 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=73.7
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe-----cCcccc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV-----ITVNCL 247 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~-----~d~~~l 247 (381)
+.++...+++|.+||-+|+|+ |-.+...|+..|+ +|+.+|++++-++.|++ + |.. ...... .++.+.
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~--~~~~~~~~~~~~~~~~~ 233 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT--VTDPSSHKSSPQELAEL 233 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe--EEeeccccccHHHHHHH
Confidence 557788899999999999997 7777777877665 89999999999999998 3 322 111111 011111
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-. .......+|+.+.... .+..++.....+|+||.+++....
T Consensus 234 v~---~~~g~~~~d~~~dCsG--------~~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 234 VE---KALGKKQPDVTFDCSG--------AEVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred HH---hhccccCCCeEEEccC--------chHHHHHHHHHhccCCEEEEeccC
Confidence 00 0122345899888733 345566778899999996665433
No 265
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.96 E-value=0.011 Score=60.14 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT-----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~-----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.....+++.+.+.+..+|+|..||+|++.....+.. ...+.|.++++.....|+.++--.|+...+....+ |..
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~-dtl 251 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG-DTL 251 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc-ccc
Confidence 445567777777788899999999999998887662 26799999999999999999988887643455555 433
Q ss_pred ccCcCCccccCCCcccEEEEchhhH---hhC--------------------hhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIE---AVG--------------------HDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~---~~~--------------------~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.-+.. ......+.||.|+++--+. +.+ ......+++.+...|+|||+..|..|+..
T Consensus 252 ~~~~~-~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 252 SNPKH-DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred cCCcc-cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 32210 0011336799999854331 110 01125789999999999998776666543
No 266
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.87 E-value=0.0085 Score=58.04 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=67.0
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+......++++||-+|||. |.++..+++..|+ +|+++|.+++.++.+++. |...-+..... +..+..
T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~-~~~~~~------ 230 (343)
T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQND-DLDHYK------ 230 (343)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcc-cHHHHh------
Confidence 3445556889999999975 8888888888787 699999999988877653 32210111111 222211
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ...++.+.++|++||+++..
T Consensus 231 ~~~g~~D~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 231 AEKGYFDVSFEV-----SGH---PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ccCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 012459999876 442 34667788899999996654
No 267
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.85 E-value=0.0026 Score=61.98 Aligned_cols=102 Identities=21% Similarity=0.177 Sum_probs=70.7
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
..|||||.|+|.++..+++..+-.|++++.-..|.+.|++....+|..++|+++.. .-.++. -.+....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk-rStev~-----vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK-RSTEVK-----VGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc-ccceee-----ecCcchhhhhhH
Confidence 36899999999999999887445899999999999999999999999999999887 655554 111234666554
Q ss_pred chh-hHhhChhcHHHHHHHHHhccccCce
Q 047022 266 CGM-IEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 266 ~~~-l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
-.. -|-++...++.+=.....+++||-.
T Consensus 142 e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 322 1223322233333334455566655
No 268
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.79 E-value=0.036 Score=53.65 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=81.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh-----------cC------CEEEEEcCCHHHHHHHHHHHHHcC----CCCCeE--E
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ-----------TG------CKYTGITLSELQLKYAEIKVKEAG----LQDTSD--Y 238 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~-----------~~------~~v~gvDis~~~~~~a~~~~~~~g----l~~~i~--~ 238 (381)
....-+|+|+||..|..++.+... .+ .+|.--|+-.+=....-+.+.... -..++- .
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 345569999999999988877543 11 367777775443332222221110 011232 2
Q ss_pred EEecCccccCcCCccccCCCcccEEEEchhhHhhCh-------------------------------------hcHHHHH
Q 047022 239 IFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH-------------------------------------DYMEELF 281 (381)
Q Consensus 239 ~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~-------------------------------------~~~~~~l 281 (381)
+.+ .+..-- ++.++.|+++|..++|++.. +|+..+|
T Consensus 94 vpg-SFy~rL------fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL 166 (334)
T PF03492_consen 94 VPG-SFYGRL------FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFL 166 (334)
T ss_dssp EES--TTS--------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred cCc-hhhhcc------CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 334 443322 56799999999998887752 1233455
Q ss_pred HHHHhccccCceEEEEcCCCCCCCCC-----Cchhhh------------------hhhccCCCCCCCHHHHHHHHHhcCC
Q 047022 282 SCCESLLAENGLSCSTVPDQCYDEHS-----LGPGFI------------------KEYIFPSGCLPSLRRVTSAMTSSSR 338 (381)
Q Consensus 282 ~~~~~~LkpgG~~~i~~~~~~~~~~~-----~~~~~i------------------~~yi~pgg~lp~~~~~~~~l~~~~G 338 (381)
+.=.+-|+|||+++++.......... ...+.+ ..+..|- +.|+.+|+.+.+.++..
T Consensus 167 ~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~-Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 167 KARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPI-YFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp HHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SB-B---HHHHHHHHHHHTS
T ss_pred HHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCc-cCCCHHHHHHHHhcCCC
Confidence 56667789999977765443321111 011111 1112232 57899999888888778
Q ss_pred cEEEEEEecc
Q 047022 339 LCVEHLENIE 348 (381)
Q Consensus 339 f~v~~~~~~~ 348 (381)
|++..++.+.
T Consensus 246 F~I~~le~~~ 255 (334)
T PF03492_consen 246 FEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9887766554
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.67 E-value=0.0052 Score=55.95 Aligned_cols=92 Identities=21% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH---HHHHcCC-----CCCeEEEEecC
Q 047022 174 SVLIEKVKLVKGQ--EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI---KVKEAGL-----QDTSDYIFVIT 243 (381)
Q Consensus 174 ~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~---~~~~~gl-----~~~i~~~~~~d 243 (381)
+.+++.+.++++. +|||.-||.|.-++.++. .|++|++++-||-+....+. +.....- ..+|+++.+ |
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~-~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~-d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLAS-LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG-D 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHH-HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES--
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHc-cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC-C
Confidence 3677788888774 999999999999999987 59999999999987665553 3222111 137899999 8
Q ss_pred ccccCcCCccccCCCcccEEEEchhhHhh
Q 047022 244 VNCLKPTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 244 ~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
..+.-. .++.+||+|..--|+.+-
T Consensus 141 ~~~~L~-----~~~~s~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 141 ALEYLR-----QPDNSFDVVYFDPMFPER 164 (234)
T ss_dssp CCCHCC-----CHSS--SEEEE--S----
T ss_pred HHHHHh-----hcCCCCCEEEECCCCCCc
Confidence 877531 245899999999888773
No 270
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.016 Score=55.71 Aligned_cols=121 Identities=10% Similarity=0.049 Sum_probs=78.2
Q ss_pred HcCCCCCCEEEEecCCchHHHHHHHHh-c----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc-
Q 047022 179 KVKLVKGQEVLEIGCGWGTLAIEIVRQ-T----GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM- 252 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~G~~~~~la~~-~----~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l- 252 (381)
.+.++|+++|||+++..|+=+..+.+. . ...|++-|.++.-+........... ..++.+... |....+...+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~-~~~~~p~~~~~ 227 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNH-DASLFPNIYLK 227 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecc-cceeccccccc
Confidence 456789999999999999988887765 2 1379999999988888777764332 224444444 4443332110
Q ss_pred --cccCCCcccEEEEc------hhhHhhCh---------------hcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 253 --TELFLGNFSTVFIC------GMIEAVGH---------------DYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 253 --~~~~~~~fD~Ivs~------~~l~~~~~---------------~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
.......||.|++- +++.+-+. .-....+.+..++||+||.++.++..-
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 00123579999972 12222111 012357888999999999999887653
No 271
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.62 E-value=0.015 Score=53.44 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=76.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH----HHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI----KVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~----~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
...+|||+|+|+|-.++.++...+.+|+..|+.......... ....+.+...+.+... ++....... +....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L-~Wg~~~~~~---~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAIL-VWGNALDVS---FRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEE-ecCCcccHh---hccCC
Confidence 356799999999988888888778899999987544332221 1122233335666665 665443211 12233
Q ss_pred -ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 260 -FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 260 -fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
||+|++..++.+- +.+..++..+...|..+|.+++..+-++
T Consensus 162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 9999999988776 4578888889999999997777665433
No 272
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.47 E-value=0.021 Score=58.13 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-----------ccCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-----------CLKP 249 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-----------~l~~ 249 (381)
..++++|+-+|||. |..++..++..|++|+++|.+++.++.+++. | .++..- |.. .+..
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i-~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLEL-DFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEe-ccccccccccchhhhcch
Confidence 45789999999997 8888888888899999999999988877763 3 222211 111 1110
Q ss_pred CC----ccccC--CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 250 TN----MTELF--LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 250 ~~----l~~~~--~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+. ...+. .+.+|+|+.......- ..+..+.+++.+.+||||.++.
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEE
Confidence 00 00001 1469999987443221 1233335999999999999554
No 273
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.032 Score=48.69 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=62.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CC-ccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TN-MTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~-l~~~~~ 257 (381)
++|+++|||+||.+|.++.-+.++ +...|.|||+-.-. + . ..++++.+.|+++... .. ...++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p---~-~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------P---P-EGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------C---C-CCcccccccccCCHHHHHHHHHhCCC
Confidence 468999999999999999988887 66789999985321 1 1 1233333214433210 00 012355
Q ss_pred CcccEEEEchh--------hHhhCh-hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGM--------IEAVGH-DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~--------l~~~~~-~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...|+|+|-.. ..|... +--.+++.-....++|+|.++.-+.+
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 78898888532 222110 01123444445667899997776543
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.29 E-value=0.24 Score=48.32 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=65.9
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC--c---cccCcCCccc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT--V---NCLKPTNMTE 254 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d--~---~~l~~~~l~~ 254 (381)
..++.+|+=+|||+ |.++..+++..| .+|+.+|.+++-++.|++..... .+..... + . ..+.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~-~~~~~~~~~~t------ 234 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSE-DDAGAEILELT------ 234 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCcc-ccHHHHHHHHh------
Confidence 34555999999997 888788887766 58999999999999998864211 1111111 1 0 0111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE-EcC
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS-TVP 299 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i-~~~ 299 (381)
....+|+++-. .+ ....+..+.++++|||.+++ .++
T Consensus 235 -~g~g~D~vie~-----~G---~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 235 -GGRGADVVIEA-----VG---SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -CCCCCCEEEEC-----CC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence 12369999876 33 25588899999999999554 444
No 275
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.29 E-value=0.018 Score=57.68 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=93.7
Q ss_pred eeecccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHH
Q 047022 153 YSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVK---GQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAE 224 (381)
Q Consensus 153 ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~---~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~ 224 (381)
+....|+.+.-...+-|...+..+++...-.. -..|+-+|+|-|-+.....+. ...++++++-+|+.+-..+
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 34455665555566667776677777654322 235678899999877655443 2467899999999988777
Q ss_pred HHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhccccCce
Q 047022 225 IKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAENGL 293 (381)
Q Consensus 225 ~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~LkpgG~ 293 (381)
. ....++..+|+++.+ |.++.++ +..+.|++|| +.+..+++.. -++.+..+.+.|||+|+
T Consensus 413 ~-~n~~~W~~~Vtii~~-DMR~w~a------p~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgI 473 (649)
T KOG0822|consen 413 N-RNFECWDNRVTIISS-DMRKWNA------PREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGI 473 (649)
T ss_pred h-hchhhhcCeeEEEec-cccccCC------chhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCce
Confidence 6 444567789999999 9999882 2378897776 4555565433 46789999999999976
No 276
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.19 E-value=0.067 Score=51.54 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+++|++||-.|+|. |.++..+++..|++|++++.+++..+.+++. |.. . .. +..+..
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~----~-vi-~~~~~~-------- 220 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA----S-AG-GAYDTP-------- 220 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc----e-ec-cccccC--------
Confidence 446778999999999874 6777788888899999999998877776653 432 1 11 221111
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+++.... . ...+....+.|++||++++.
T Consensus 221 ~~~~d~~i~~~~---~-----~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 221 PEPLDAAILFAP---A-----GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cccceEEEECCC---c-----HHHHHHHHHhhCCCcEEEEE
Confidence 145887664321 1 24677788999999997654
No 277
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.17 E-value=0.0078 Score=60.06 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=64.1
Q ss_pred CEEEEecCCchHHHHHHHHhcCCEEEEEcC--CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGWGTLAIEIVRQTGCKYTGITL--SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~~~~~v~gvDi--s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..|+|..+|.|+++..+... .+-|.-+-+ .++.+...- +.|+-+ .. . |+.+.-+ .-+.+||+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIy----dRGLIG---~y-h-DWCE~fs-----TYPRTYDLl 431 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIY----DRGLIG---VY-H-DWCEAFS-----TYPRTYDLL 431 (506)
T ss_pred eeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhh----hcccch---hc-c-chhhccC-----CCCcchhhe
Confidence 46999999999999999875 443332222 233333332 235421 11 1 3332210 234899999
Q ss_pred EEchhhHhhChh-cHHHHHHHHHhccccCceEEEE
Q 047022 264 FICGMIEAVGHD-YMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 264 vs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-+.++|.+..+. +...++-++.|+|+|+|.++|-
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 999988876432 5788999999999999998885
No 278
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.12 E-value=0.064 Score=46.51 Aligned_cols=135 Identities=15% Similarity=0.169 Sum_probs=80.6
Q ss_pred ecCCchHHHHHHHHhc--CCEEEEEcCC--HHHHHH---HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 191 IGCGWGTLAIEIVRQT--GCKYTGITLS--ELQLKY---AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 191 iGcG~G~~~~~la~~~--~~~v~gvDis--~~~~~~---a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|=|.=.++..++++. +..++++... ++..+. +.+++.... ...+.+..+.|+.++.... ....+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~--~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHF--RLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCcccccc--cccCCcCCEE
Confidence 5556667777788773 4466555544 333322 223333221 1234554444777775210 1245889999
Q ss_pred EEchhhHhhC------h-------hcHHHHHHHHHhccccCceEEEEcCCCCCCCCCCchhhhhhhccCCCCCCCHHHHH
Q 047022 264 FICGMIEAVG------H-------DYMEELFSCCESLLAENGLSCSTVPDQCYDEHSLGPGFIKEYIFPSGCLPSLRRVT 330 (381)
Q Consensus 264 vs~~~l~~~~------~-------~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~~~~~~~~i~~yi~pgg~lp~~~~~~ 330 (381)
+-+ +.|++ . .-+..+|+.+.++|+++|.+.|+..+... + .. +-+
T Consensus 80 iFN--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--y---~~----------------W~i 136 (166)
T PF10354_consen 80 IFN--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--Y---DS----------------WNI 136 (166)
T ss_pred EEe--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--C---cc----------------ccH
Confidence 987 55665 1 12557999999999999999998765432 0 00 112
Q ss_pred HHHHhcCCcEEEEEEecchhH
Q 047022 331 SAMTSSSRLCVEHLENIETHY 351 (381)
Q Consensus 331 ~~l~~~~Gf~v~~~~~~~~~y 351 (381)
..+++++||.+.....+....
T Consensus 137 ~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 137 EELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred HHHHHhcCCEEEEEecCCHHH
Confidence 455566899999888776543
No 279
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.11 E-value=0.05 Score=51.98 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=66.5
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccccC
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~~ 256 (381)
...+.++.+||..|||. |..+..+++..|.+|++++.+++..+.+++. |+. .... ..+... ..+....
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~----~~~~--~~~~~~~~~~~~~~ 229 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD----EVLN--SLDDSPKDKKAAGL 229 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC----EEEc--CCCcCHHHHHHHhc
Confidence 34567889999999874 8888999988899999999999988877542 331 1111 111000 0000013
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+|+.. ++ ....++++.+.|+++|.++..
T Consensus 230 ~~~~D~vid~-----~g---~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDF-----VG---TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEEC-----CC---CHHHHHHHHHHhhcCCEEEEE
Confidence 3679999875 22 144677889999999997654
No 280
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.10 E-value=0.032 Score=52.39 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
.++..++.+.++|+...+|.--|-|+.+..+.++.+ .+++|+|-++..++.|+++....+ ++++++.. ++.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~-~F~~l~~ 87 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHG-NFANLAE 87 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeC-cHHHHHH
Confidence 456788899999999999999999999999999843 679999999999999999987654 68999998 8876631
Q ss_pred CCccccCCCcccEEEE
Q 047022 250 TNMTELFLGNFSTVFI 265 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs 265 (381)
.+.....+++|-|+.
T Consensus 88 -~l~~~~i~~vDGiL~ 102 (314)
T COG0275 88 -ALKELGIGKVDGILL 102 (314)
T ss_pred -HHHhcCCCceeEEEE
Confidence 111122357777775
No 281
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.01 E-value=0.024 Score=54.64 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=65.8
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+..+.+.++++||=+|+|. |.++..+++..|++ |++++.+++..+.+++. |.. .+. +..+...+.+..
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i---~~~~~~~~~~~~ 225 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVI---NSGQDDVQEIRE 225 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEE---cCCcchHHHHHH
Confidence 4556778899999999875 77778888888888 99999999888777543 331 111 111100000000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. ....+|+|+.. ++. ...+....+.|+++|++++.
T Consensus 226 ~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 226 LTSGAGADVAIEC-----SGN---TAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred HhCCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 1 22469999865 332 34456677889999996643
No 282
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.95 E-value=0.07 Score=51.85 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=63.1
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITL---SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDi---s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....++.+||-+|||. |.++..+++..|++|++++. ++..++.+++ .|.. .+..... +..+..
T Consensus 167 ~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~-~~~~~~------ 234 (355)
T cd08230 167 RLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKT-PVAEVK------ 234 (355)
T ss_pred hcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCcc-chhhhh------
Confidence 33456889999999985 88888888888889999986 5666665543 2331 1111111 111100
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.+|+|+.. ++. ...+....++|++||.+++
T Consensus 235 -~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 235 -LVGEFDLIIEA-----TGV---PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred -hcCCCCEEEEC-----cCC---HHHHHHHHHHccCCcEEEE
Confidence 12569999886 432 3467788899999999654
No 283
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=95.88 E-value=0.035 Score=52.14 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=64.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcC
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPT 250 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~ 250 (381)
++.....++++||-+|+|. |.++..+++..|++ |+++|.+++.++.+++. |.. ..+... +. ..+.
T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~--~~i~~~-~~~~~~~~~~-- 183 (280)
T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT--ALAEPE-VLAERQGGLQ-- 183 (280)
T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc--EecCch-hhHHHHHHHh--
Confidence 3445556899999999975 77888888878876 89999998877776653 321 111011 11 1111
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+-. ++. ...++.+.+.|+|+|++++.
T Consensus 184 -----~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 184 -----NGRGVDVALEF-----SGA---TAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred -----CCCCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEe
Confidence 22469999875 332 45677788999999996653
No 284
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.87 E-value=0.061 Score=52.39 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...++++++||-.|||. |..+..+++..|+ +|+++|.+++..+.+++. |...-+..... +..+. +..
T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~----i~~ 239 (358)
T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GATHTVNSSGT-DPVEA----IRA 239 (358)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCceEEcCCCc-CHHHH----HHH
Confidence 3445678899999999975 7888888888887 499999999988887543 33100111111 11100 000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. ....+|+|+-. ++. ...++...+.|++||++++.
T Consensus 240 ~~~~~g~d~vid~-----~g~---~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 240 LTGGFGADVVIDA-----VGR---PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HhCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 1 22468999875 332 34566678899999997654
No 285
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.80 E-value=0.029 Score=54.99 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=66.9
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+...++++++||=.|+|. |.++..+++..|+ +|+++|.+++.++.+++. |...-+..... +..+ .+.
T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~-~~~~----~i~ 253 (371)
T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GATATVNAGDP-NAVE----QVR 253 (371)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCceEeCCCch-hHHH----HHH
Confidence 34556678999999999975 7788888888888 699999999988877653 33100111111 1100 000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+.+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 254 ~~~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 254 ELTGGGVDYAFEM-----AGS---VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 0112368999875 322 34566778899999996653
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.78 E-value=0.022 Score=56.14 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||.+|||. |..+..+++..+. ++++++.+++..+.+++.. +. ..+..... + ... ..+..+
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~-~--~~~-~~l~~~ 249 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEV-D--DVV-EALREL 249 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcc-h--HHH-HHHHHH
Confidence 455677899999999998 9999999998786 5999999999888887652 11 01111111 1 000 000001
Q ss_pred -CCCcccEEEEchhh-----------Hhh--ChhcHHHHHHHHHhccccCceEEEEc
Q 047022 256 -FLGNFSTVFICGMI-----------EAV--GHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 256 -~~~~fD~Ivs~~~l-----------~~~--~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
....+|+|+..-.- .|. +..+....++++.++|+|+|.+++..
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 22469999875211 111 11123567888999999999976543
No 287
>PRK11524 putative methyltransferase; Provisional
Probab=95.72 E-value=0.038 Score=52.27 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
..+++++.... .+|+.|||.-||+|+.+..+.+ .|-+.+|+|++++.++.|++++..
T Consensus 196 ~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 196 ALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 44556666554 6899999999999999887766 699999999999999999999853
No 288
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.65 E-value=0.041 Score=54.09 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+.+|||.=||+|.=++..+.. .+ .+|+.-|+|++.++..+++++.+++.+ ++++... |+..+-. .....|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~-DAn~ll~-----~~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNM-DANVLLY-----SRQERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES--HHHHHC-----HSTT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehh-hHHHHhh-----hccccC
Confidence 3468999999999999999887 33 589999999999999999999999987 7899998 8876530 134789
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+|=.- -+| .+..|+..+.+.++.||.+.+|.-+
T Consensus 123 D~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 123 DVIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEEE------SS----HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CEEEeC----CCC--CccHhHHHHHHHhhcCCEEEEeccc
Confidence 987653 122 3678999999999999999988543
No 289
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.61 E-value=0.018 Score=54.73 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 173 VSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 173 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
++.+++.+.++++..++|.--|.|+.+..++++ ++++++|+|.++++++.+++++... .+++.+... ++.++.. .
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~-~F~~l~~-~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHG-NFSNLDE-Y 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES--GGGHHH-H
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEec-cHHHHHH-H
Confidence 457788888889999999999999999999987 5689999999999999998887543 468999999 8877641 1
Q ss_pred cccc-CCCcccEEEEc
Q 047022 252 MTEL-FLGNFSTVFIC 266 (381)
Q Consensus 252 l~~~-~~~~fD~Ivs~ 266 (381)
+... ...++|.|+.-
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 1112 23578888863
No 290
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.54 E-value=0.034 Score=49.67 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=56.6
Q ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
+.++-.++ | +.|+|+|.-.|+-++..|.. ..++|+|+|+...... ++......+.++|+++++ |..+..
T Consensus 25 qeli~~~k--P-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G-ds~d~~ 98 (206)
T PF04989_consen 25 QELIWELK--P-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG-DSIDPE 98 (206)
T ss_dssp HHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES--SSSTH
T ss_pred HHHHHHhC--C-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC-CCCCHH
Confidence 34555553 4 59999999998888877653 3479999999543221 222223345579999999 876542
Q ss_pred cC-Ccccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 249 PT-NMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~-~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.- .+... ......+|+-- + .|.- ++....|+....+++||+++++.
T Consensus 99 ~~~~v~~~~~~~~~vlVilD-s-~H~~-~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILD-S-SHTH-EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HHHTSGSS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHHHhhccCCceEEEEC-C-CccH-HHHHHHHHHhCccCCCCCEEEEE
Confidence 00 00001 11223344432 2 2221 24577788899999999998774
No 291
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.48 E-value=0.041 Score=46.87 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=62.4
Q ss_pred CCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSD-YIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~-~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+++++-+|+..=..-..+.++...+|..++.++- ++-.+ ..+++. +... |+..-- ....++||.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L--~i~~~------~~dr~ssi~p~-df~~~~-----~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKL--EIQEE------FRDRLSSILPV-DFAKNW-----QKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeeccc--ccCcc------cccccccccHH-HHHHHH-----HHhhccchhh
Confidence 5678888887544433334432346888886542 11111 111221 1112 221100 0123789999
Q ss_pred EEchhhHhhChh---------cHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 264 FICGMIEAVGHD---------YMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 264 vs~~~l~~~~~~---------~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.|..++||++-. .....+.++.++|||||.+++++|-..
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 999999999731 234678889999999999999998654
No 292
>PLN02740 Alcohol dehydrogenase-like
Probab=95.43 E-value=0.11 Score=51.06 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=65.3
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe-cCccccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV-ITVNCLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~-~d~~~l~~~~l~ 253 (381)
.+...+++|++||=+|||. |..+..+++..|+ +|+++|.+++.++.+++. |...-+..... .++.+. +.
T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~----v~ 262 (381)
T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GITDFINPKDSDKPVHER----IR 262 (381)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCcEEEecccccchHHHH----HH
Confidence 3456678999999999985 7888888888888 699999999988887653 43211111100 001100 00
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...++.....+++| |++++
T Consensus 263 ~~~~~g~dvvid~-----~G~---~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 263 EMTGGGVDYSFEC-----AGN---VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHhhhcCCCEEEE
Confidence 1112369999875 432 34566777888886 88554
No 293
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.42 E-value=0.047 Score=49.08 Aligned_cols=53 Identities=28% Similarity=0.326 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
..++++++.. ..+|+.|||.-||+|+.+..+.+ .|-+.+|+|++++..+.|++
T Consensus 179 ~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh-hccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 4455666655 47899999999999999988776 69999999999999998874
No 294
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.37 E-value=0.011 Score=57.57 Aligned_cols=87 Identities=15% Similarity=0.289 Sum_probs=66.4
Q ss_pred CCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH
Q 047022 150 SMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE 229 (381)
Q Consensus 150 ~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~ 229 (381)
.+.|+..||.+. |..-.. + +.. -.++|..|.|+-||-|-+++.++++ +|+|++-|++++++++.+.+++.
T Consensus 224 k~DfskVYWnsR---L~~Ehe----r-lsg-~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 224 KFDFSKVYWNSR---LSHEHE----R-LSG-LFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred EEecceEEeecc---chhHHH----H-Hhh-ccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccc
Confidence 356788899742 211111 1 222 2579999999999999999999996 89999999999999999999887
Q ss_pred cCCCCC-eEEEEecCcccc
Q 047022 230 AGLQDT-SDYIFVITVNCL 247 (381)
Q Consensus 230 ~gl~~~-i~~~~~~d~~~l 247 (381)
+-+.+. |++... |+.+.
T Consensus 294 Nkv~~~~iei~Nm-da~~F 311 (495)
T KOG2078|consen 294 NKVDPSAIEIFNM-DAKDF 311 (495)
T ss_pred cccchhheeeecc-cHHHH
Confidence 776655 888888 76543
No 295
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.37 E-value=0.033 Score=52.01 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=80.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEecCccccCcCCccccCC
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEA--GL-QDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~--gl-~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
+...++||-||.|.|+.....+++.. ..+.-+|+....++..++..+.. |. ..++.+..+ |...+-. ....
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iG-DG~~fl~----~~~~ 193 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIG-DGFLFLE----DLKE 193 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEec-cHHHHHH----Hhcc
Confidence 44567999999999999999888733 37899999999999888877643 22 247899999 8765421 1235
Q ss_pred CcccEEEEch--hhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 258 GNFSTVFICG--MIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 258 ~~fD~Ivs~~--~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++||+|+.-- .+--........+++.+.+.||++|++++.
T Consensus 194 ~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 194 NPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred CCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 8999998632 111111124678999999999999997654
No 296
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.27 E-value=0.16 Score=46.40 Aligned_cols=99 Identities=23% Similarity=0.228 Sum_probs=62.6
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~~~~~~ 259 (381)
+.++.+||..|+|. |..+..+++..|.+|++++.+++..+.+++. +.. .+. +...... ..+.....+.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVI---DYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eec---cCCcCCHHHHHHHhcCCC
Confidence 37899999999985 7777888887889999999998877766443 211 111 1111100 0000012367
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+|+|+.. ++. ...+..+.+.|+++|.++...
T Consensus 202 ~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDA-----VGG---PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEEc
Confidence 9999976 321 145666788899999966543
No 297
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.23 E-value=0.071 Score=48.34 Aligned_cols=111 Identities=14% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCHHH----HHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSELQ----LKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~~~----~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+.++||.+||-+|+++|....++..- +..-|.+++.|+.. +..|+++ .||--+.. |++...
T Consensus 149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiE-DArhP~-- 218 (317)
T KOG1596|consen 149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIE-DARHPA-- 218 (317)
T ss_pred ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeec-cCCCch--
Confidence 45677899999999999999988888765 45678999988643 3444443 46666667 776542
Q ss_pred CccccCCCcccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEEEEcCCCCC
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSCSTVPDQCY 303 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~~~~ 303 (381)
.. ...-+..|+|++. +.+. +...+.-+.+-.||+||-++|++-....
T Consensus 219 KY-RmlVgmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 219 KY-RMLVGMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred he-eeeeeeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEecccc
Confidence 00 0122578888886 4333 3344456778899999999988755443
No 298
>PRK13699 putative methylase; Provisional
Probab=95.21 E-value=0.083 Score=48.24 Aligned_cols=57 Identities=23% Similarity=0.339 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 172 KVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 172 ~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
.++.++.... .+|+.|||.-||+|+.+..+.+ .+.+.+|+|++++..+.+.+++...
T Consensus 152 l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHH
Confidence 3445555443 6899999999999999888776 5999999999999999999998654
No 299
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.086 Score=50.39 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=65.2
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe---cCccccCcCCccccCCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV---ITVNCLKPTNMTELFLG 258 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~---~d~~~l~~~~l~~~~~~ 258 (381)
..++|||+|.|.|.-+..+-.- +. ..++.++.|+..-+........... .+...... .|-..++ ..+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp-------~ad 184 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLP-------AAD 184 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCC-------ccc
Confidence 3467999999998766544332 22 2577788888766555544332221 12222222 0222333 346
Q ss_pred cccEEEEchhhHhhChh-cHHHHHHHHHhccccCceEEEEcCC
Q 047022 259 NFSTVFICGMIEAVGHD-YMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.|++|+...-+-+.+.+ .+..+++.+..++.|||.++|.-+.
T Consensus 185 ~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 185 LYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred eeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 67877776655555432 3445889999999999998887554
No 300
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.20 E-value=0.14 Score=49.53 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=61.2
Q ss_pred cCCCCCCEEEEecCCc-hHHHHHHHHh-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 180 VKLVKGQEVLEIGCGW-GTLAIEIVRQ-T-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~-G~~~~~la~~-~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
+.+++|++||-+|||. |.++..++++ . +.+|+++|.+++.++.+++ .+. . .... + +. .
T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~-~---~~-------~ 219 (341)
T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLID-D---IP-------E 219 (341)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehh-h---hh-------h
Confidence 4457899999999986 6677777765 3 4689999999887777754 121 1 1111 1 11 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+|+-. ++.......+....++|++||++++
T Consensus 220 ~~g~d~viD~-----~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 220 DLAVDHAFEC-----VGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred ccCCcEEEEC-----CCCCccHHHHHHHHHhCcCCcEEEE
Confidence 1248998865 3311124577888899999999654
No 301
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.13 E-value=0.2 Score=48.59 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=40.5
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
....++++++||-+|||. |..+..+++..|++|+++|.+++.++.+++
T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 346678899999999976 888888888888899999999998887765
No 302
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=95.03 E-value=0.11 Score=50.17 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=69.3
Q ss_pred HHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+.+...+++|++||-.|+ |-|.+++++|+..|..++++.-+++..+.+++. |...-+.+... |+.+--
T Consensus 132 ~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~-~~~~~v--- 203 (326)
T COG0604 132 LALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREE-DFVEQV--- 203 (326)
T ss_pred HHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcc-cHHHHH---
Confidence 34455677889999999995 468999999999887777777777666555443 43222333333 332211
Q ss_pred cccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+. ....+|+|+.. ++ ...+......|+++|+++..
T Consensus 204 -~~~t~g~gvDvv~D~-----vG----~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 204 -RELTGGKGVDVVLDT-----VG----GDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred -HHHcCCCCceEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 011 22469999987 54 45566688899999996653
No 303
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.95 E-value=0.22 Score=48.78 Aligned_cols=104 Identities=18% Similarity=0.277 Sum_probs=65.5
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|||. |.++..+|+..|+ +|+++|.+++.++.+++. |...-+.. . +.. ... +.+.
T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~--~-~~~~~~~-~~v~ 249 (368)
T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNP--N-DYDKPIQ-EVIV 249 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcc--c-ccchhHH-HHHH
Confidence 3456778999999999975 7888888888888 799999999988887653 43211111 1 100 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.++++ |++++
T Consensus 250 ~~~~~g~d~vid~-----~G~---~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 250 EITDGGVDYSFEC-----IGN---VNVMRAALECCHKGWGESII 285 (368)
T ss_pred HHhCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCCeEEE
Confidence 0112368998875 432 34567778889886 88553
No 304
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.88 E-value=0.094 Score=50.68 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||=.|||. |..+..+++..|++ |++++.+++..+.+++. |...-+..... +...+. ...
T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~~----~~~ 224 (347)
T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAMQTFNSREM-SAPQIQ----SVL 224 (347)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCceEecCccc-CHHHHH----HHh
Confidence 445667899999999975 77888888888886 78999998877766442 32100111111 101110 001
Q ss_pred CCCccc-EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFS-TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD-~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+| +|+-. ++. ...+....++|++||++++.
T Consensus 225 ~~~~~d~~v~d~-----~G~---~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 225 RELRFDQLILET-----AGV---PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred cCCCCCeEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 224577 66543 432 45677788999999996654
No 305
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.87 E-value=0.2 Score=49.79 Aligned_cols=98 Identities=11% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++.+++..++ .+|++|+-+|||+ |......++..|++|+.+|.++.....|++. |. +. . +..+.-
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~--~-~~~e~v-- 255 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EV--M-TMEEAV-- 255 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EE--c-cHHHHH--
Confidence 3455555443 4799999999998 6666667776899999999998876666542 32 11 1 221211
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHH-HHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSC-CESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~-~~~~LkpgG~~~i~~ 298 (381)
...|+|+.. .+. ...+.. ..+.+|+||+++...
T Consensus 256 -------~~aDVVI~a-----tG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 256 -------KEGDIFVTT-----TGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -------cCCCEEEEC-----CCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 357999875 322 334444 488999999976543
No 306
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.77 E-value=0.099 Score=47.18 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEA-GLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~-gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.++||||.|--..=-.+-.+ +|.+.+|.|+++..++.|+..+..+ ++...|+.....|-..+-+.- .-..+.||
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gi--ig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGI--IGKNERYD 155 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccc--ccccceee
Confidence 5568999998753322222222 7889999999999999999998877 777677776652322221000 01247899
Q ss_pred EEEEchhhHh
Q 047022 262 TVFICGMIEA 271 (381)
Q Consensus 262 ~Ivs~~~l~~ 271 (381)
++.|+--++.
T Consensus 156 ~tlCNPPFh~ 165 (292)
T COG3129 156 ATLCNPPFHD 165 (292)
T ss_pred eEecCCCcch
Confidence 9999876654
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.76 E-value=0.11 Score=42.36 Aligned_cols=87 Identities=24% Similarity=0.258 Sum_probs=58.4
Q ss_pred CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcccc-CCCcccEEEEchhhHh
Q 047022 194 GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTEL-FLGNFSTVFICGMIEA 271 (381)
Q Consensus 194 G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~-~~~~fD~Ivs~~~l~~ 271 (381)
|.|.++..+++..|++|+++|.++..++.+++. |.. .+. |+.+.. .+.+... ....+|+|+-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga~---~~~---~~~~~~~~~~i~~~~~~~~~d~vid~----- 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GAD---HVI---DYSDDDFVEQIRELTGGRGVDVVIDC----- 65 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TES---EEE---ETTTSSHHHHHHHHTTTSSEEEEEES-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----ccc---ccc---cccccccccccccccccccceEEEEe-----
Confidence 468899999998889999999999988887764 311 111 222210 0011111 22479999887
Q ss_pred hChhcHHHHHHHHHhccccCceEEEEc
Q 047022 272 VGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 272 ~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. ...++....+|+|+|++++..
T Consensus 66 ~g~---~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 66 VGS---GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp SSS---HHHHHHHHHHEEEEEEEEEES
T ss_pred cCc---HHHHHHHHHHhccCCEEEEEE
Confidence 442 567888999999999976654
No 308
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=94.65 E-value=0.6 Score=44.28 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=66.8
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
+++...+.++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++. |.. . .. ++....
T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~----~-~~-~~~~~~------ 210 (319)
T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL----GVE----T-VL-PDEAES------ 210 (319)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc----E-Ee-Cccccc------
Confidence 34566778899999998864 7777777887899999999999888877762 432 1 11 222212
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. .+. ...++.+.+.|+++|.+++
T Consensus 211 -~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 -EGGGFDVVVEA-----TGS---PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred -cCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 23569999986 322 3456677888999999765
No 309
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=94.63 E-value=0.12 Score=49.73 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=65.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~ 255 (381)
....+.++++||-.|+|. |..+..+|+..|.++++++.+++..+.+++. +...-+..... +. ..+. ...
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~-~~~~~l~----~~~ 223 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDE-DVAARLR----ELT 223 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCccc-CHHHHHH----HHh
Confidence 455677899999999875 8888889988899999999898888777543 22100111111 11 0010 001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 224 ~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 DGEGADVVIDA-----TGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEE
Confidence 23469999986 221 3456778889999999654
No 310
>PLN02827 Alcohol dehydrogenase-like
Probab=94.55 E-value=0.27 Score=48.40 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcccc--C-cCCc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCL--K-PTNM 252 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l--~-~~~l 252 (381)
+...++++++||-+|+|. |.++..+++..|. .|+++|.+++..+.+++. |.. .++ +..+. + .+.+
T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i---~~~~~~~~~~~~v 256 (378)
T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFI---NPNDLSEPIQQVI 256 (378)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEE---cccccchHHHHHH
Confidence 345677899999999975 7788888887787 588999998877777543 432 111 21110 0 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
.....+.+|+|+-. ++. ...+....+.|++| |++++
T Consensus 257 ~~~~~~g~d~vid~-----~G~---~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 257 KRMTGGGADYSFEC-----VGD---TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HHHhCCCCCEEEEC-----CCC---hHHHHHHHHhhccCCCEEEE
Confidence 01112369999875 432 34566778889998 99654
No 311
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.50 E-value=0.38 Score=46.71 Aligned_cols=102 Identities=19% Similarity=0.275 Sum_probs=66.5
Q ss_pred HHHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc---ccCcCC
Q 047022 177 IEKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN---CLKPTN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~---~l~~~~ 251 (381)
.+...+++|++||=.|+ | .|.++..+|+..|++|++++.+++..+.+++.+ |.. .+. |+. +.. +.
T Consensus 151 ~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l---Ga~---~vi---~~~~~~~~~-~~ 220 (348)
T PLN03154 151 YEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL---GFD---EAF---NYKEEPDLD-AA 220 (348)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc---CCC---EEE---ECCCcccHH-HH
Confidence 34456789999999998 4 588999999988999999999988777665332 332 111 111 110 00
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+.....+.+|+|+.. ++ ...+..+.++|+++|++++.
T Consensus 221 i~~~~~~gvD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 221 LKRYFPEGIDIYFDN-----VG----GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred HHHHCCCCcEEEEEC-----CC----HHHHHHHHHHhccCCEEEEE
Confidence 000112468999875 43 23567788999999996653
No 312
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.43 E-value=0.34 Score=46.49 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=62.4
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec--CccccCcCCccc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI--TVNCLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~--d~~~l~~~~l~~ 254 (381)
.+...++++||-.|||. |..+..+++..|. ++++++.++...+.+++. +.. .+.... +.....
T Consensus 160 ~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~------ 226 (339)
T cd08232 160 RAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYA------ 226 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhh------
Confidence 34434789999999886 7888888888887 799999998887765543 321 111110 111111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+... +. ...++.+.+.|+++|+++.
T Consensus 227 ~~~~~vd~vld~~-----g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 227 ADKGDFDVVFEAS-----GA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ccCCCccEEEECC-----CC---HHHHHHHHHHHhcCCEEEE
Confidence 0124599999762 11 2356778899999999664
No 313
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.37 E-value=0.038 Score=44.00 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=30.8
Q ss_pred cccEEEEchhhH--hh--ChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 259 NFSTVFICGMIE--AV--GHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 259 ~fD~Ivs~~~l~--~~--~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+||+|+|..+.- |+ +++.+..+|+.+++.|+|||.+++.-.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999876543 33 566788999999999999999988753
No 314
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.36 E-value=0.44 Score=45.50 Aligned_cols=105 Identities=20% Similarity=0.321 Sum_probs=66.3
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
+.+...+++|++||=.|+ |.|..+..+++..|+++++++.+++..+.+++ .|.. .+ +... +..... +.+.
T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~-~v-i~~~-~~~~~~-~~~~ 201 (325)
T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD-VA-FNYK-TVKSLE-ETLK 201 (325)
T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-EE-Eecc-ccccHH-HHHH
Confidence 345567789999999984 46889999999889999999999887777754 2431 11 1111 100100 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+.+|+|+.. ++. ..+....++|+++|+++..
T Consensus 202 ~~~~~gvdvv~d~-----~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 202 KASPDGYDCYFDN-----VGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HhCCCCeEEEEEC-----CCH----HHHHHHHHHhCcCcEEEEe
Confidence 0122469999875 432 2357788999999997643
No 315
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.23 E-value=0.039 Score=51.32 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHH-------HH----HHHcCCCCCeEEEEecCccccCcCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAE-------IK----VKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~-------~~----~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
..+++|||+|||.|-..+.+..+..+.++..|.|.+.++.-. -. ..+... -..+... .+.+..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~--~~~i~~s-~l~dg~--- 188 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHK--VDEILNS-LLSDGV--- 188 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhccc--ceecccc-ccccch---
Confidence 368899999999999999998863378888888877663211 00 011000 0111111 111111
Q ss_pred ccccCCC--cccEEEEchhhHhhChhcHHHH-HHHHHhccccCceEEEEc
Q 047022 252 MTELFLG--NFSTVFICGMIEAVGHDYMEEL-FSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~--~fD~Ivs~~~l~~~~~~~~~~~-l~~~~~~LkpgG~~~i~~ 298 (381)
....+ .||+|.++.++.... ..... ......+++++|.+++..
T Consensus 189 --~~~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 189 --FNHTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred --hhhccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 01113 799999999887763 33443 566677889999966543
No 316
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.17 E-value=0.23 Score=47.93 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
-..+-++.+.+..++.-.++|||.|.|.++..+++.. .+++..|++|++..+.=+++++..
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3444455666665566789999999999999887652 478999999999887777766543
No 317
>PHA01634 hypothetical protein
Probab=94.16 E-value=0.14 Score=41.89 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=44.5
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL 232 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl 232 (381)
...+++ .+.+|+|||++-|.-+++++.+....|+++++++...+..++.++...+
T Consensus 22 Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 22 YGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred hhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 444443 4679999999999999999986334799999999999999998776543
No 318
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=94.13 E-value=0.45 Score=46.44 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=65.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|+|. |.++..+++..|+ +|++++.+++.++.+++. |.. ..+... +.. +.. +.+.
T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~--~~i~~~-~~~~~~~-~~v~ 250 (368)
T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT--DCVNPK-DHDKPIQ-QVLV 250 (368)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC--EEEccc-ccchHHH-HHHH
Confidence 4456678999999999875 7777888888888 799999999988877542 432 111111 110 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.|+++ |+++.
T Consensus 251 ~~~~~g~d~vid~-----~g~---~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 251 EMTDGGVDYTFEC-----IGN---VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred HHhCCCCcEEEEC-----CCC---hHHHHHHHHhhccCCCeEEE
Confidence 1112469999875 332 34667778889997 88654
No 319
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=1.1 Score=41.01 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHh-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCC
Q 047022 183 VKGQEVLEIGCGWGTLAIEIVRQ-----TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 183 ~~~~~VLDiGcG~G~~~~~la~~-----~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
..+..++|+|+|+..-+..+... .-.+++.+|+|...++...+.+...-..-.+.-..+ |++..- +..+.
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~-~~~~~L----a~~~~ 151 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG-DYELAL----AELPR 151 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh-hHHHHH----hcccC
Confidence 34789999999998777666544 225899999999988765554443322223555667 765321 11222
Q ss_pred CcccE-EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFST-VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~-Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+--+ ++...++..+.+.+...++..+...|+||-.+.+.+.-
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 22222 33344677777777889999999999999998887654
No 320
>PTZ00357 methyltransferase; Provisional
Probab=94.10 E-value=0.28 Score=50.93 Aligned_cols=112 Identities=15% Similarity=0.293 Sum_probs=71.5
Q ss_pred EEEEecCCchHHHHHHHHh---cC--CEEEEEcCCHHHHHHHHHHH-HHcCC-------CCCeEEEEecCccccCcCC--
Q 047022 187 EVLEIGCGWGTLAIEIVRQ---TG--CKYTGITLSELQLKYAEIKV-KEAGL-------QDTSDYIFVITVNCLKPTN-- 251 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~---~~--~~v~gvDis~~~~~~a~~~~-~~~gl-------~~~i~~~~~~d~~~l~~~~-- 251 (381)
.|+-+|+|-|.+.....+. .+ .+|.+|+-++....+...+. ....+ .++|+++.. |.+......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~s-DMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVA-DGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeC-ccccccccccc
Confidence 5899999999887665443 33 57999999966444444442 22234 346999999 999885210
Q ss_pred --cc-ccCCCcccEEEEchhhHhhChhc-HHHHHHHHHhcccc----Cce----EEEEcCC
Q 047022 252 --MT-ELFLGNFSTVFICGMIEAVGHDY-MEELFSCCESLLAE----NGL----SCSTVPD 300 (381)
Q Consensus 252 --l~-~~~~~~fD~Ivs~~~l~~~~~~~-~~~~l~~~~~~Lkp----gG~----~~i~~~~ 300 (381)
+. ...-+++|+||| +.|..+|+.+ -++-|..+.+.||+ +|+ ..|++|.
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPq 841 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQ 841 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhccccccccCCcceecch
Confidence 00 001147998887 3455555433 35778888888887 786 4566665
No 321
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.07 E-value=0.67 Score=43.24 Aligned_cols=129 Identities=13% Similarity=0.100 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCcccc
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVNCL 247 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~~l 247 (381)
.+.++..+...--.....|+.+|||-=.-...+....+.++.=+|. |+.++.-++.+...+. ..+.+++.. |+.+-
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~-Dl~~~ 144 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPV-DLRQD 144 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEecc-Cchhh
Confidence 3445555554322223469999999877666664323456666665 5566666666665432 357788888 87621
Q ss_pred CcCCc--cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNM--TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l--~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
-.+.+ ..+..+.--++++-+++.+++.+....+++.+.+...||+.+++....
T Consensus 145 w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 145 WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 00001 012234455788888999999888999999999998899998887543
No 322
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.05 E-value=0.18 Score=48.79 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCC-CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 167 VGQIRKVSVLIEKVKLV-KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~-~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
+.+.+.+..++..+... +-+.|+|+|.|.|+++..+.-++|..|.+||-|....+.|++
T Consensus 135 qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 135 QHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 44555555666665433 447899999999999999998899999999999766655543
No 323
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.03 E-value=0.31 Score=46.38 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=58.0
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.++++||=+|||. |.++..+++..|++ |.++|.+++.++.+.+. . .- |..+.. ...+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~i-~~~~~~--------~~g~ 201 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------VL-DPEKDP--------RRDY 201 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------cc-Chhhcc--------CCCC
Confidence 3577899999985 88888888887876 66788887766554321 1 11 221111 2468
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+-. ++. ...++.+.+.|+|+|++++.
T Consensus 202 Dvvid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 202 RAIYDA-----SGD---PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred CEEEEC-----CCC---HHHHHHHHHhhhcCcEEEEE
Confidence 999876 442 44667788999999996643
No 324
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=0.5 Score=45.70 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=78.1
Q ss_pred CCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|||-=||+|.=++.++...+. +++.-|+||..++.+++++..+... +...... |+..+-- .....||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~-DAN~lm~-----~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINK-DANALLH-----ELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecc-hHHHHHH-----hcCCCccEE
Confidence 579999999999999999988555 8999999999999999999887333 4555557 7765531 112678876
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
=.- - +| .+..|+....+.++.||.+.+|--+
T Consensus 126 DiD-P---FG--SPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 126 DID-P---FG--SPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred ecC-C---CC--CCchHHHHHHHHhhcCCEEEEEecc
Confidence 442 1 22 3678888999999999998887543
No 325
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=93.94 E-value=0.53 Score=45.89 Aligned_cols=106 Identities=21% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...++++++||=+|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+..... +. .+. +.+..
T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~-~~-~~~-~~~~~ 249 (365)
T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDS-DK-PVS-EVIRE 249 (365)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccc-cc-hHH-HHHHH
Confidence 3456678999999999875 7777888888888 799999999888877542 33111111110 00 000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i~ 297 (381)
...+.+|+|+.. ++. ...+....+.|+|+ |++++.
T Consensus 250 ~~~~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 250 MTGGGVDYSFEC-----TGN---ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred HhCCCCCEEEEC-----CCC---hHHHHHHHHhcccCCCEEEEE
Confidence 112469999865 332 34566778889885 886543
No 326
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.90 E-value=0.48 Score=45.04 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=66.2
Q ss_pred HHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCc
Q 047022 176 LIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNM 252 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l 252 (381)
+.+...+.+|++||=.|+ |.|..+..+++..|++|++++.+++..+.+++. |.. .+. |+.+.. .+.+
T Consensus 135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi---~~~~~~~~~~v 204 (329)
T cd08294 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVF---NYKTVSLEEAL 204 (329)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEE---eCCCccHHHHH
Confidence 345566789999999984 458899999998899999999998877777652 432 111 111100 0000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+.+|+|+.. ++ ...++...+.|+++|+++.
T Consensus 205 ~~~~~~gvd~vld~-----~g----~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 205 KEAAPDGIDCYFDN-----VG----GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHHCCCCcEEEEEC-----CC----HHHHHHHHHhhccCCEEEE
Confidence 01122569999875 33 2346778899999999664
No 327
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.90 E-value=0.17 Score=46.88 Aligned_cols=88 Identities=18% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHHHHcC-CCCCCEEEEecCCchHHHHHHHHhc---------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCCeEEE
Q 047022 175 VLIEKVK-LVKGQEVLEIGCGWGTLAIEIVRQT---------GCKYTGITLSELQLKYAEIKVKEA-----GLQDTSDYI 239 (381)
Q Consensus 175 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~---------~~~v~gvDis~~~~~~a~~~~~~~-----gl~~~i~~~ 239 (381)
...+.+. ....-+|+|+|+|.|.++..+++.. ..+++.||+|+.+.+.-++++... ....+|.+
T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252)
T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252)
T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-
T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-
Confidence 3444443 2223699999999999999988751 258999999999888777776442 12334554
Q ss_pred EecCccccCcCCccccCCCcccEEEEchhhHhhCh
Q 047022 240 FVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGH 274 (381)
Q Consensus 240 ~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~ 274 (381)
.. +..+.+ ..-+|++++.+..+|-
T Consensus 87 ~~-~l~~~p----------~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 87 LD-DLEEVP----------FPGFIIANELFDALPV 110 (252)
T ss_dssp ES-SGGCS-----------CCEEEEEESSGGGS--
T ss_pred hh-hhhccc----------CCEEEEEeeehhcCce
Confidence 22 333322 3567889999988863
No 328
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=93.88 E-value=0.76 Score=45.70 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=63.3
Q ss_pred HcCCCCCCEEEEec-CC-chHHHHHHHHhcCC---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc---cCcC
Q 047022 179 KVKLVKGQEVLEIG-CG-WGTLAIEIVRQTGC---KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC---LKPT 250 (381)
Q Consensus 179 ~l~~~~~~~VLDiG-cG-~G~~~~~la~~~~~---~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~---l~~~ 250 (381)
...++++++||=+| || .|.++..+++..|. +|+++|.+++.++.+++...............- +..+ +. +
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i-~~~~~~~~~-~ 247 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYV-NPATIDDLH-A 247 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEE-CCCccccHH-H
Confidence 45677899999997 45 48888888887543 799999999988888775211100001111111 2111 00 0
Q ss_pred Ccccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 251 NMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 251 ~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+... ....+|+|+.. .+. ...+....+.++++|.+++
T Consensus 248 ~v~~~t~g~g~D~vid~-----~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 248 TLMELTGGQGFDDVFVF-----VPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHHHHhCCCCCCEEEEc-----CCC---HHHHHHHHHHhccCCeEEE
Confidence 00001 22469988864 221 3466778889999887543
No 329
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=93.72 E-value=0.81 Score=42.36 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=63.8
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||-.|||. |..+..+++..|.+ |++++.+++..+.+++. |..+.+. ... + ...
T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~-~~~-~--~~~------- 155 (277)
T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVA-ADT-A--DEI------- 155 (277)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCcccc-ccc-h--hhh-------
Confidence 356677899999999986 77888888888888 99999999887766653 3111111 001 1 111
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+....+.|+++|.++.
T Consensus 156 ~~~~~d~vl~~-----~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 156 GGRGADVVIEA-----SGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred cCCCCCEEEEc-----cCC---hHHHHHHHHHhcCCcEEEE
Confidence 22569999865 211 3356677888999999654
No 330
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=93.72 E-value=0.24 Score=47.89 Aligned_cols=102 Identities=23% Similarity=0.242 Sum_probs=64.4
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~ 254 (381)
....++++.+||=.|+|. |..+..+++..|+ +|++++.+++..+.+++. |...-+..... ++.+ +. ..
T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~-~~~~~l~----~~ 236 (351)
T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEV-DVVAEVR----KL 236 (351)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCcc-CHHHHHH----HH
Confidence 556678899999998864 7777888888888 899999998888777542 33211111111 1110 10 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+.. .+. ...++.+.+.|+++|.++.
T Consensus 237 ~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 237 TGGGGVDVSFDC-----AGV---QATLDTAIDALRPRGTAVN 270 (351)
T ss_pred hCCCCCCEEEEC-----CCC---HHHHHHHHHhccCCCEEEE
Confidence 122459999976 221 3356778889999999554
No 331
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=93.68 E-value=0.27 Score=47.25 Aligned_cols=101 Identities=20% Similarity=0.188 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-cc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT-EL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~-~~ 255 (381)
...+.++.+||-.|+|. |..+..+++..|.+ +++++-+++..+.+++. +.. .+. +........+. ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~---~~~---~~~~~~~~~~~~~~ 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GAD---DTI---NPKEEDVEKVRELT 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC---EEe---cCccccHHHHHHHh
Confidence 45567899999999876 78888888888886 99999888877766432 321 111 11110000000 01
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. .+. ...+..+.++|+++|+++..
T Consensus 224 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 224 EGRGADLVIEA-----AGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 22459999976 321 34567788999999996543
No 332
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.55 E-value=0.25 Score=50.34 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-----------cCcC
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-----------LKPT 250 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-----------l~~~ 250 (381)
.++.+|+-+|||. |..+..+++..|+.|+++|.+++.++.+++. |. ++..- |..+ +..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----Ga----~~v~v-~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----GA----EFLEL-DFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEec-cccccccccccceeecCHH
Confidence 3678999999996 7777777877899999999999977766652 22 22222 2110 0000
Q ss_pred Cc------cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 251 NM------TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 251 ~l------~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.. .......+|+|+..-.+.-- ..+.-..+++.+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEE
Confidence 00 00012569999887544332 233456788899999999855
No 333
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.47 E-value=0.068 Score=50.93 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHH-------HHHHHHHcCCCC-CeEEEEecCccccC
Q 047022 177 IEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKY-------AEIKVKEAGLQD-TSDYIFVITVNCLK 248 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~-------a~~~~~~~gl~~-~i~~~~~~d~~~l~ 248 (381)
.....++||+-|+|--.|||++....|. .|+.|.|.||+-.++.. .+.++++.|..+ -+.+..+ |....+
T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~-D~sn~~ 278 (421)
T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA-DFSNPP 278 (421)
T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee-cccCcc
Confidence 3445578999999999999999998887 69999999999888872 355667777433 3577788 887665
Q ss_pred cCCccccCCCcccEEEEch------h------------------hHhhChhc-------HHHHHHHHHhccccCceEEEE
Q 047022 249 PTNMTELFLGNFSTVFICG------M------------------IEAVGHDY-------MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~------~------------------l~~~~~~~-------~~~~l~~~~~~LkpgG~~~i~ 297 (381)
-. ..-.||.|+|.- . ..|.|... ....+.-..+.|..||++++-
T Consensus 279 ~r-----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 279 LR-----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred hh-----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 11 245799999832 1 11222111 224566677889999998877
Q ss_pred cC
Q 047022 298 VP 299 (381)
Q Consensus 298 ~~ 299 (381)
.|
T Consensus 354 ~p 355 (421)
T KOG2671|consen 354 LP 355 (421)
T ss_pred cC
Confidence 66
No 334
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.40 E-value=0.84 Score=44.52 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=59.1
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~~~~~ 259 (381)
++++++||-.|||. |.++..+++..|.++++++.+++....+.+ ..|.. .+.. . +...+. ... +.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~---~~Ga~---~vi~~~-~~~~~~-----~~~-~~ 247 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAIN---RLGAD---SFLVST-DPEKMK-----AAI-GT 247 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHH---hCCCc---EEEcCC-CHHHHH-----hhc-CC
Confidence 46889999999985 888888888889999888887654332221 22331 1111 1 111111 011 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+-. ++. ...++.+.+.|++||+++..
T Consensus 248 ~D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 248 MDYIIDT-----VSA---VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHHhcCCcEEEEe
Confidence 8988865 332 34567788999999996643
No 335
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.39 E-value=0.74 Score=44.89 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=64.2
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~ 253 (381)
.+...++++++||=+|+|. |.++..+++..|+ +|++++.+++..+.+++. |.. ..+... +.. ... +.+.
T Consensus 180 ~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~--~~i~~~-~~~~~~~-~~v~ 251 (369)
T cd08301 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT--EFVNPK-DHDKPVQ-EVIA 251 (369)
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc--eEEccc-ccchhHH-HHHH
Confidence 3446678999999999875 7777888888888 799999999888877542 432 111111 100 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~~~i 296 (381)
....+.+|+|+-. ++. ...+....+.+++| |++++
T Consensus 252 ~~~~~~~d~vid~-----~G~---~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 252 EMTGGGVDYSFEC-----TGN---IDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCCEEEE
Confidence 0122468988865 332 34566677888996 88654
No 336
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.38 E-value=0.26 Score=47.70 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=64.1
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~ 254 (381)
....++++++||-.|+|. |..+..+++..|. .+++++.+++..+.+++. |...-+..... +.. .+. ..
T Consensus 160 ~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~i~----~~ 230 (351)
T cd08285 160 ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVDYKNG-DVVEQIL----KL 230 (351)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEecCCCC-CHHHHHH----HH
Confidence 455678899999999874 7788888888787 589999998877766642 43211111111 110 000 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. .+. ...+..+.+.|+++|+++.
T Consensus 231 ~~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 231 TGGKGVDAVIIA-----GGG---QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred hCCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 122469999865 321 3467788899999999653
No 337
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.36 E-value=0.61 Score=46.60 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.|++|+=+|+|+ |......++..|++|+.+|.++.....+.. .|. + .. +..+.- ..+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G~----~--v~-~l~eal---------~~aDV 270 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DGF----R--VM-TMEEAA---------ELGDI 270 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cCC----E--ec-CHHHHH---------hCCCE
Confidence 789999999997 655555666679999999999865433322 121 2 22 332222 46899
Q ss_pred EEEchhhHhhChhcHHHHHH-HHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFS-CCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~ 297 (381)
|+.. .+. ...+. .....+|+|++++..
T Consensus 271 VI~a-----TG~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 271 FVTA-----TGN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EEEC-----CCC---HHHHHHHHHhcCCCCCEEEEc
Confidence 9875 222 33454 677889999986543
No 338
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.35 E-value=0.23 Score=48.89 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=41.9
Q ss_pred HHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 047022 176 LIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
-.+.|++.|+++||-|.+|......++.+. ..+|++||+||.|....+-+..
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 356778899999999988876666666663 6799999999999988876654
No 339
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.35 E-value=0.35 Score=46.56 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTN 251 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~ 251 (381)
....+.++.+||-.|+|. |..+..+++..|.+ +++++.+++..+.+++. +...-+..... +. ..+.
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~-~~~~~~~~~~--- 227 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTE-DTPESAEKIA--- 227 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccc-cchhHHHHHH---
Confidence 566778999999998876 88888888888887 89998888877776543 32110111111 10 0110
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.......+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 228 -~~~~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 228 -ELLGGKGPDVVIEC-----TGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred -HHhCCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE
Confidence 00123569999976 221 23566778899999996644
No 340
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.23 E-value=0.13 Score=46.32 Aligned_cols=99 Identities=10% Similarity=0.118 Sum_probs=65.2
Q ss_pred CEEEEecCCchHHHHHHHHh-cC------C---EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC--cc
Q 047022 186 QEVLEIGCGWGTLAIEIVRQ-TG------C---KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN--MT 253 (381)
Q Consensus 186 ~~VLDiGcG~G~~~~~la~~-~~------~---~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~--l~ 253 (381)
.+|+|+.+..|.++..+.++ +. . ++++||+.+- + .++ .|.-+++ |+....-.+ +.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------a---PI~-GV~qlq~-DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------A---PIE-GVIQLQG-DITSASTAEAIIE 109 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------C---ccC-ceEEeec-ccCCHhHHHHHHH
Confidence 58999999999999999887 21 1 3999999763 1 122 4556677 776543110 12
Q ss_pred ccCCCcccEEEEchh-----hHh----hChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGM-----IEA----VGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~-----l~~----~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.|...+.|+|+|-+. +|. +..+-+...|.-...+|||||.++.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 345568999999663 222 22223446677788999999997653
No 341
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.23 E-value=1.6 Score=39.21 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=64.9
Q ss_pred CCCEEEEecCCch----HHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCC
Q 047022 184 KGQEVLEIGCGWG----TLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFL 257 (381)
Q Consensus 184 ~~~~VLDiGcG~G----~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~ 257 (381)
.-+.++++.|+.| .+++.+|.+ .|.++++|-..++-+...++.+...++.+.++|+.+ +. +++-+ .-
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg-~~~e~~~~------~~ 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVG-EAPEEVMP------GL 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEec-CCHHHHHh------hc
Confidence 3457888866533 344444433 889999999998888888888888888877899998 74 33321 23
Q ss_pred CcccEEEEchhhHhhChhcHH-HHHHHHHhccccCceEEEEc
Q 047022 258 GNFSTVFICGMIEAVGHDYME-ELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~-~~l~~~~~~LkpgG~~~i~~ 298 (381)
...|.++..-- .++.. .+|+.+. +.|.|-+++..
T Consensus 114 ~~iDF~vVDc~-----~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 114 KGIDFVVVDCK-----REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred cCCCEEEEeCC-----chhHHHHHHHHhc--cCCCceEEEEe
Confidence 57898887521 22333 4444433 44567666543
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.12 E-value=1.7 Score=41.44 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=65.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc-CCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP-TNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~-~~l~~ 254 (381)
+...+.++.+||-+|+|. |..+..+++..|++ +++++.+++..+.+++. +.. .+. +...... .. ..
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~-~~ 221 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETV---DPSREDPEAQ-KE 221 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEe---cCCCCCHHHH-HH
Confidence 556678899999999874 77888888888877 89999998887776443 321 111 1111100 00 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 222 ~~~~~vd~v~~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 222 DNPYGFDVVIEA-----TGV---PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred hcCCCCcEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE
Confidence 123569999975 321 34667778899999996643
No 343
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.88 E-value=1 Score=43.31 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=66.6
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+++|++||=.|+ |.|.++..+++..|+++++++.+++..+.+++.+ |...-+......+..+. +..
T Consensus 144 ~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~----i~~ 216 (338)
T cd08295 144 YEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAA----LKR 216 (338)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHH----HHH
Confidence 34456789999999997 4588889999988999999999888777776532 33211111100011110 000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+.. ++ ...+..+.++|+++|+++.
T Consensus 217 ~~~~gvd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 217 YFPNGIDIYFDN-----VG----GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred hCCCCcEEEEEC-----CC----HHHHHHHHHHhccCcEEEE
Confidence 112568999875 43 2456778899999999664
No 344
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=92.86 E-value=1 Score=41.46 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHH------HHHHHHcCCCCCCEEEEec--CCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC
Q 047022 162 HEDLEVGQIRKV------SVLIEKVKLVKGQEVLEIG--CGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ 233 (381)
Q Consensus 162 ~~~l~~aq~~~~------~~l~~~l~~~~~~~VLDiG--cG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~ 233 (381)
..++..+..-.+ ..+.+..+++||++||--. .|-|.++.++++..+++++++..+.+-.+.|+++ |..
T Consensus 118 ~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~ 193 (336)
T KOG1197|consen 118 AITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAE 193 (336)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCc
Confidence 455665554333 3445667889999988664 3678899999988899999999888877777765 554
Q ss_pred CCeEEEEecCccccCcCCcccc-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 234 DTSDYIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 234 ~~i~~~~~~d~~~l~~~~l~~~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
.-|..... |+.+-- ..+ .....|+++-+ ++ ...++.-..+|||.|.++
T Consensus 194 h~I~y~~e-D~v~~V----~kiTngKGVd~vyDs-----vG----~dt~~~sl~~Lk~~G~mV 242 (336)
T KOG1197|consen 194 HPIDYSTE-DYVDEV----KKITNGKGVDAVYDS-----VG----KDTFAKSLAALKPMGKMV 242 (336)
T ss_pred ceeeccch-hHHHHH----HhccCCCCceeeecc-----cc----chhhHHHHHHhccCceEE
Confidence 45666666 654321 011 24668888876 65 345666778999999955
No 345
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.75 E-value=0.99 Score=43.32 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=63.2
Q ss_pred HHcCCCCC--CEEEEecC--CchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 178 EKVKLVKG--QEVLEIGC--GWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 178 ~~l~~~~~--~~VLDiGc--G~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
+...++++ ++||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. . +... .-.++. +.+
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~-~--vi~~-~~~~~~-~~i 217 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD-A--AINY-KTDNVA-ERL 217 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc-E--EEEC-CCCCHH-HHH
Confidence 34445655 89999986 468899999998898 8999999988777766532 432 1 1111 101110 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+.+|+|+.. ++. . .+..+.++|+++|+++.
T Consensus 218 ~~~~~~gvd~vid~-----~g~---~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 218 RELCPEGVDVYFDN-----VGG---E-ISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHCCCCceEEEEC-----CCc---H-HHHHHHHHhccCCEEEE
Confidence 01112569999875 332 1 24677889999999664
No 346
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=92.70 E-value=0.99 Score=43.75 Aligned_cols=101 Identities=20% Similarity=0.120 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~~~~ 259 (381)
.++.+||=.|+|. |..+..+++..|. +|++++.+++..+.+++ .|...-+..... +..+.. ..+.. .....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~-~~~~~~-~~i~~~~~~~~ 249 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDEL-PDPQRR-AIVRDITGGRG 249 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCccc-ccHHHH-HHHHHHhCCCC
Confidence 4888999999874 7777888888888 99999998887666543 243210111111 110000 00000 12246
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 250 ~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 250 ADVVIEA-----SGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred CcEEEEC-----CCC---hHHHHHHHHHhccCCEEEEE
Confidence 9999865 221 33566778899999997654
No 347
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=92.66 E-value=0.82 Score=43.57 Aligned_cols=99 Identities=18% Similarity=0.173 Sum_probs=63.9
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.++.+||-+||| .|..+..+++..|.+|++++.+++..+.+++. +.. .+... .-..... . .
T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~-~~~~~~~----~-~ 222 (330)
T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDS-GAELDEQ----A-A 222 (330)
T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEecc-CCcchHH----h-c
Confidence 33567888999999997 68888888888899999999999887776432 321 11111 1001100 0 1
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+++.. ++. ...+..+.+.|+++|.++..
T Consensus 223 ~~~~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 223 AGGADVILVT-----VVS---GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred cCCCCEEEEC-----CCc---HHHHHHHHHhcccCCEEEEE
Confidence 2468998875 221 23566778899999986654
No 348
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.56 E-value=0.34 Score=47.97 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=64.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++++||=.|+|. |.++..+++..|++ ++.+|.+++.++.+++. |.. .+... .-.+.. +.+..
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~-~~~~~~-~~v~~~ 249 (393)
T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLS-KDATLP-EQIEQI 249 (393)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecC-CcccHH-HHHHHH
Confidence 345677899998899975 77888888877876 56678888777777653 431 11111 000000 00000
Q ss_pred cCCCcccEEEEchhhHh------hChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEA------VGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~------~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+-.-.... ....+....++...+++++||++++
T Consensus 250 ~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 250 LGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred cCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 12246899986522110 0001123578888999999999654
No 349
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=92.03 E-value=0.99 Score=43.25 Aligned_cols=99 Identities=20% Similarity=0.150 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
..+.+.++++||=.|||. |..+..+++..|.+++.++.+++..+.+++. |...-+..... +... +.
T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~-~~~~~~~------- 224 (333)
T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAHHYIDTSKE-DVAEALQ------- 224 (333)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCcEEecCCCc-cHHHHHH-------
Confidence 445677899999999874 7788888888899999999998877777442 32100111111 1111 11
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+++.. .+. ...+..+.+.|+++|.++.
T Consensus 225 ~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 225 ELGGAKLILAT-----APN---AKAISALVGGLAPRGKLLI 257 (333)
T ss_pred hcCCCCEEEEC-----CCc---hHHHHHHHHHcccCCEEEE
Confidence 11358998864 221 3456777889999999654
No 350
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=92.00 E-value=0.54 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=63.9
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~ 253 (381)
.....+.++.+||-.|+| .|..+..+++..|.. |++++.++...+.+++. |.. .+. +..... ...+.
T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~~---~vv---~~~~~~~~~~l~ 244 (363)
T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GAT---HTV---NASEDDAVEAVR 244 (363)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CCe---EEe---CCCCccHHHHHH
Confidence 344567788999999886 477888888888885 99999988877766432 321 111 111100 00000
Q ss_pred c-cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 E-LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~-~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. .....+|+++.. ++. ...+..+.+.|+++|+++..
T Consensus 245 ~~~~~~~vd~vld~-----~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 245 DLTDGRGADYAFEA-----VGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HHcCCCCCCEEEEc-----CCC---hHHHHHHHHHhhcCCeEEEE
Confidence 0 123569999865 221 34567788899999996643
No 351
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=91.98 E-value=3.4 Score=39.22 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=62.7
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
....+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++ .|. +... +....+
T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~--~~~~~~-------- 222 (329)
T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG--DSDDLP-------- 222 (329)
T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe--ccCccC--------
Confidence 556678889999998875 666677777789999999998877766643 232 1111 222212
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+++... + ....++.+.+.|+++|.++..
T Consensus 223 ~~~vD~vi~~~-----~---~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 223 PEPLDAAIIFA-----P---VGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred CCcccEEEEcC-----C---cHHHHHHHHHHhhcCCEEEEE
Confidence 24589887541 1 124577789999999997653
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.82 E-value=0.5 Score=45.36 Aligned_cols=102 Identities=20% Similarity=0.173 Sum_probs=61.5
Q ss_pred HcCCCCCCEEEEecCC-chHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGCG-WGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
...++++.+||-.|+| .|..+..+++..|. .+++++.++...+.+++. |...-+..... +..+ +. ...
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~-~~~~~i~----~~~ 232 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNG-DIVEQIL----ELT 232 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcc-hHHHHHH----HHc
Confidence 3456788999998886 47888888888785 888888887766665542 21100111111 1101 00 001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.+|+|+.. ++. ...+....+.|+++|+++..
T Consensus 233 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 233 GGRGVDCVIEA-----VGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCCCcEEEEc-----cCC---HHHHHHHHHHhhcCCEEEEE
Confidence 23569999875 221 24667778899999996643
No 353
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.71 E-value=0.97 Score=42.89 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT 253 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~ 253 (381)
......++||++|.-+|+|. |.....-++..| .+++|+|++++-.+.|++. |.. +++...|..+.-.+-+.
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f----GaT---e~iNp~d~~~~i~evi~ 256 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF----GAT---EFINPKDLKKPIQEVII 256 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc----Ccc---eecChhhccccHHHHHH
Confidence 34556678999999999997 444444455555 4899999999999988876 322 22221022220000011
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC-ce-EEEEcCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN-GL-SCSTVPD 300 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~-~~i~~~~ 300 (381)
+..++.+|.-+-. ++. .+.++++....+.| |. +++.++.
T Consensus 257 EmTdgGvDysfEc-----~G~---~~~m~~al~s~h~GwG~sv~iGv~~ 297 (375)
T KOG0022|consen 257 EMTDGGVDYSFEC-----IGN---VSTMRAALESCHKGWGKSVVIGVAA 297 (375)
T ss_pred HHhcCCceEEEEe-----cCC---HHHHHHHHHHhhcCCCeEEEEEecC
Confidence 2335778876643 433 55666667777788 77 5555544
No 354
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=91.59 E-value=1.4 Score=42.96 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++++||-.|+|. |..+..+++..|. .+++++.++...+.+++. +.. .+... +-.... +.+...
T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~~---~~i~~-~~~~~~-~~v~~~ 250 (365)
T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GAT---HVINP-KEEDLV-AAIREI 250 (365)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCc---EEecC-CCcCHH-HHHHHH
Confidence 345667899999999875 7888888888888 699999998877766542 321 11111 100100 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 251 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 251 TGGGVDYALDT-----TGV---PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred hCCCCcEEEEC-----CCC---cHHHHHHHHHhccCCEEEEe
Confidence 13569999875 322 34567788899999996653
No 355
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.46 E-value=1.3 Score=47.16 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCEEEEecCCchHHHHHHHHh--------c-----CCEEEEEcCCH---HHHHHHH-----------HHHHH-----cC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ--------T-----GCKYTGITLSE---LQLKYAE-----------IKVKE-----AG 231 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~--------~-----~~~v~gvDis~---~~~~~a~-----------~~~~~-----~g 231 (381)
+.-+|+|+|-|+|...+...+. + ..++++++..| +.+..+. +.... .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999876655532 1 13788888533 3333322 22111 12
Q ss_pred C------CC--CeEEEEecCccccCcCCccccCCCcccEEEEchhhHh-hChhcHHHHHHHHHhccccCceEE
Q 047022 232 L------QD--TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEA-VGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 232 l------~~--~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~-~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+ .+ .+++..+ |+++.-+. ....+|+++.-..-.. -|.---..+|+.+.++++|||++.
T Consensus 137 ~~~~~~~~~~~~l~l~~g-d~~~~~~~-----~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFG-DANELLPQ-----LDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEec-CHHHHHHh-----ccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 1 11 2446667 87654311 1256999997542221 111123689999999999999865
No 356
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=91.44 E-value=2.5 Score=41.10 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=59.5
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
.+++++||-+|+|. |..+..+++..|+++++++.+++....+.+. .|.. . .+... +...+. . ....+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~-~-~i~~~-~~~~~~-----~-~~~~~ 245 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD-D-YLVSS-DAAEMQ-----E-AADSL 245 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc-E-EecCC-ChHHHH-----H-hcCCC
Confidence 35889999888875 8888888888888998888887655444332 2431 1 11111 111111 0 11358
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|+|+-. ++. ...++.+.+.|+++|+++..
T Consensus 246 D~vid~-----~g~---~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 246 DYIIDT-----VPV---FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred cEEEEC-----CCc---hHHHHHHHHHhccCCEEEEE
Confidence 988865 332 34567778899999996543
No 357
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.44 E-value=1.4 Score=43.74 Aligned_cols=97 Identities=13% Similarity=0.231 Sum_probs=59.9
Q ss_pred HHHHHHcC-CCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVK-LVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~-~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++..+ ...|++|+-+|+|+ |......++..|++|+++|.++.....+.. .|. . .. +..+.-
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~----~--v~-~leeal--- 248 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGF----R--VM-TMEEAA--- 248 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCC----E--eC-CHHHHH---
Confidence 34444433 24789999999998 666666666689999999998864333321 121 1 12 222221
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHH-HHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFS-CCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~-~~~~~LkpgG~~~i~~ 298 (381)
...|+|++. .+. ...+. +....+|+|++++...
T Consensus 249 ------~~aDVVIta-----TG~---~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 249 ------KIGDIFITA-----TGN---KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ------hcCCEEEEC-----CCC---HHHHHHHHHhcCCCCcEEEEEC
Confidence 356998875 221 34443 4778899999876543
No 358
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.35 E-value=1.9 Score=41.43 Aligned_cols=99 Identities=22% Similarity=0.206 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTN 251 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~ 251 (381)
....+.++.+||=.|+|. |..+..+++..| .++++++.++.....+++. |...-+..... +. ....
T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~i~~~~--- 231 (345)
T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKG-DAIEQVLELT--- 231 (345)
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccc-cHHHHHHHHh---
Confidence 344567888988888864 677777888778 7899999888776666542 33211121111 11 1111
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 232 ----~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 232 ----DGRGVDVVIEA-----VGI---PATFELCQELVAPGGHIAN 264 (345)
T ss_pred ----CCCCCCEEEEC-----CCC---HHHHHHHHHhccCCcEEEE
Confidence 23469999875 332 3356778899999999664
No 359
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=91.27 E-value=0.78 Score=42.98 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=47.5
Q ss_pred ecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH
Q 047022 155 CAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK 228 (381)
Q Consensus 155 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~ 228 (381)
+-.|+++..+++..| +.+|.+|+-||+|.-.+..++++. ..+|.+||+++.++...+-++.
T Consensus 46 pqiwEDp~Vdmeam~------------~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 46 PQIWEDPSVDMEAMQ------------LGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred ccccCCccccHHHHh------------cCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHH
Confidence 445666665555544 568899999999988888888885 7899999999999987766554
No 360
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.15 E-value=1.1 Score=35.70 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhh
Q 047022 193 CGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMI 269 (381)
Q Consensus 193 cG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l 269 (381)
||+|.++..+++. .+..|+.+|.+++..+.+++. .+.+..+ |..+.. .+....-.+.|.|++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~g-d~~~~~--~l~~a~i~~a~~vv~~--- 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYG-DATDPE--VLERAGIEKADAVVIL--- 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES--TTSHH--HHHHTTGGCESEEEEE---
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccc-cchhhh--HHhhcCccccCEEEEc---
Confidence 5667777777665 344899999999987776654 2678888 887642 1111223678888886
Q ss_pred HhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 270 EAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 270 ~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
.+++.....+....+-+.|...++....
T Consensus 70 --~~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 70 --TDDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp --SSSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred --cCCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 3333333344455566777777766553
No 361
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.13 E-value=0.083 Score=49.46 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=71.8
Q ss_pred CCCEEEEecCCchHHHH-HHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAI-EIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~-~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+..|+|+=+|-|++++ .+.......|.++|.+|..++..+..+..+++.++..+..+ |-+... +....|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~g-d~R~~~-------~~~~Adr 265 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEG-DNRNPK-------PRLRADR 265 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhc-cccccC-------ccccchh
Confidence 45789999999999999 55554234799999999999999999998888888888888 877665 4578888
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
|.... +... ++-.-.+.++|||.|-
T Consensus 266 VnLGL-lPSs-----e~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 266 VNLGL-LPSS-----EQGWPTAIKALKPEGG 290 (351)
T ss_pred eeecc-cccc-----ccchHHHHHHhhhcCC
Confidence 87642 2111 2333345778888766
No 362
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=91.13 E-value=0.19 Score=39.86 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHhcCCEEEEEcCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLS 216 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis 216 (381)
+...-+|||||.|-+..-+.+. |..-.|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4568999999999998888775 8888999974
No 363
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.10 E-value=1.1 Score=39.38 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCEEEEecCCchHHHHHHHHh---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC-CccccCCC
Q 047022 185 GQEVLEIGCGWGTLAIEIVRQ---TG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT-NMTELFLG 258 (381)
Q Consensus 185 ~~~VLDiGcG~G~~~~~la~~---~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~-~l~~~~~~ 258 (381)
.+.|+|+|.-+|+-++..|.. .| .+|+++|++-..++-+... . .+|.|+.+ +-.+.... +.... .+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~eg-ss~dpai~eqi~~~-~~ 141 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEG-SSTDPAIAEQIRRL-KN 141 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeC-CCCCHHHHHHHHHH-hc
Confidence 358999999999988888765 45 7899999987665443322 2 47999999 77654210 00011 12
Q ss_pred cccEEEE-chhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFI-CGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs-~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|-.|+. ..+-||. +..-+.++....+|..|-++++..
T Consensus 142 ~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 142 EYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEec
Confidence 3334443 3344444 334677788889999999877643
No 364
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.89 E-value=0.22 Score=49.82 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=83.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++-+|||.=|++|.-++..++. .+ .+|++.|.+++.++..++++..++..+.++.... |+..+--+. ......||
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~-DA~~lM~~~--~~~~~~FD 185 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHS-DANVLMYEH--PMVAKFFD 185 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccc-hHHHHHHhc--cccccccc
Confidence 5678999999999999999988 44 3799999999999999999999888888888888 876542110 01247799
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+|=.- -.| ....|+..+.+.++.||.+.+|.-+
T Consensus 186 vIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 186 VIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred eEecC----CCC--CccHHHHHHHHHhhcCCEEEEEecc
Confidence 87543 111 2578889999999999998887543
No 365
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.83 E-value=1.2 Score=43.75 Aligned_cols=92 Identities=22% Similarity=0.242 Sum_probs=58.0
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHH-HHHHHHHHHHcCCCCCeEEE-EecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQ-LKYAEIKVKEAGLQDTSDYI-FVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~-~~~a~~~~~~~gl~~~i~~~-~~~d~~~l~~~~l~~~~~~~ 259 (381)
+++++||-.|||. |..+..+|+..|+++++++.+++. .+.++ ..|.. .++ .. +...+. ... +.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~-~~~~v~-----~~~-~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTT-DSQKMK-----EAV-GT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCc-CHHHHH-----Hhh-CC
Confidence 5789999999975 788888888889999999887653 33332 23431 111 11 111111 011 35
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+|+-. ++. ...+..+.+.|+++|.++.
T Consensus 243 ~D~vid~-----~G~---~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 243 MDFIIDT-----VSA---EHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CcEEEEC-----CCc---HHHHHHHHHhhcCCCEEEE
Confidence 8998875 332 3456777889999999654
No 366
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=90.48 E-value=0.52 Score=46.41 Aligned_cols=79 Identities=10% Similarity=0.049 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce
Q 047022 214 TLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL 293 (381)
Q Consensus 214 Dis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 293 (381)
+..|..++.-.-..-..++ ++++++.+ ++.+.-. ..+++++|.++....+.+++++...+.++++.+.++|||+
T Consensus 256 ~~~P~YL~~e~f~~lr~~~-drv~i~t~-si~~~L~----~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaR 329 (380)
T PF11899_consen 256 DCCPPYLRPENFEALRARL-DRVRIHTD-SIEEVLR----RLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGAR 329 (380)
T ss_pred CCCChhhcHhHHHHHhcCC-CeEEEEec-cHHHHHH----hCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCE
Confidence 4445444322211223355 79999999 8876531 1346999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047022 294 SCSTV 298 (381)
Q Consensus 294 ~~i~~ 298 (381)
+++-.
T Consensus 330 V~~Rs 334 (380)
T PF11899_consen 330 VLWRS 334 (380)
T ss_pred EEEee
Confidence 88744
No 367
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.42 E-value=0.91 Score=44.19 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=61.7
Q ss_pred cCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-ccC
Q 047022 180 VKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT-ELF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~-~~~ 256 (381)
..+.++.+||-.|+| .|..+..+++..|.+ +++++.+++..+.+++. +.. .+... +-.... +.+. ...
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~~---~v~~~-~~~~~~-~~l~~~~~ 253 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GAT---HTVNA-AKEDAV-AAIREITG 253 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---eEecC-CcccHH-HHHHHHhC
Confidence 344688899888876 477778888878887 99999888877766432 321 11111 100000 0000 012
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+|+.. ++. ...++.+.++|+++|.++..
T Consensus 254 ~~~~d~vld~-----vg~---~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 254 GRGVDVVVEA-----LGK---PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCCCCEEEEe-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 3569999875 432 13567788999999996644
No 368
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=90.39 E-value=1.1 Score=43.70 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=63.7
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...+.++.+||=+|+|. |..+..+++..|.. +++++.+++..+.+++. |...-+..... |. +.. +.+..
T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~-~~~-~~l~~ 248 (365)
T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQ-DK-PIV-EVLTE 248 (365)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccc-cc-hHH-HHHHH
Confidence 4455678899999999874 77777788877874 88888888888777542 33211111100 00 000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccc-cCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA-ENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~~i~ 297 (381)
...+.+|+|+.. .+. ...+....+.|+ ++|+++..
T Consensus 249 ~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 249 MTDGGVDYAFEV-----IGS---ADTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred HhCCCCcEEEEC-----CCC---HHHHHHHHHHhccCCCEEEEE
Confidence 112569999875 321 345667788899 99996654
No 369
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.26 E-value=1 Score=43.19 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=68.5
Q ss_pred HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
..+..+++++|++|.-+|||. |-.++.-|+..++ +++++|+++.-++.|++. |.. +++...+..++. +.+
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GAT---~~vn~~~~~~vv-~~i 247 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GAT---HFVNPKEVDDVV-EAI 247 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CCc---eeecchhhhhHH-HHH
Confidence 457778889999999999986 6666666666554 899999999999998876 322 222220111000 000
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCce-EEEEcCC
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGL-SCSTVPD 300 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~~i~~~~ 300 (381)
....++..|.++-. .+. ...++.....+.++|. +++..+.
T Consensus 248 ~~~T~gG~d~~~e~-----~G~---~~~~~~al~~~~~~G~~v~iGv~~ 288 (366)
T COG1062 248 VELTDGGADYAFEC-----VGN---VEVMRQALEATHRGGTSVIIGVAG 288 (366)
T ss_pred HHhcCCCCCEEEEc-----cCC---HHHHHHHHHHHhcCCeEEEEecCC
Confidence 01223467777543 432 3466777777778998 4444544
No 370
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.10 E-value=2.5 Score=40.56 Aligned_cols=99 Identities=20% Similarity=0.171 Sum_probs=59.8
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 182 LVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 182 ~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
..++.+||-.|+|. |..+..+++..|. ++++++-+++..+.+++. |...-+..... +...+. .....+.
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~----~~~~~~~ 231 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREE-DVVEVK----SVTDGTG 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccc-cHHHHH----HHcCCCC
Confidence 46788888888875 7788888888888 788887777666655542 32111111111 111000 0012357
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. ......+.+.|+++|.++..
T Consensus 232 vd~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEM-----SGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 9999975 221 33466778899999996654
No 371
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=90.07 E-value=0.62 Score=43.79 Aligned_cols=68 Identities=9% Similarity=0.136 Sum_probs=49.5
Q ss_pred EEEEecCCchHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+|+|+.||.|+++.-+.+. |.+ +.++|+++..++..+.+... .+..+ |+.++.+.. . ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~-Di~~~~~~~---~-~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEG-DITKIDEKD---F-IPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccC-ccccCchhh---c-CCCCCEEEe
Confidence 6999999999998888764 665 68899999988887776531 14566 777775321 0 356999987
Q ss_pred ch
Q 047022 266 CG 267 (381)
Q Consensus 266 ~~ 267 (381)
..
T Consensus 69 gp 70 (275)
T cd00315 69 GF 70 (275)
T ss_pred CC
Confidence 43
No 372
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.01 E-value=0.88 Score=40.83 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=73.6
Q ss_pred cccccCCCCceeecccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcC---CEEEEEcCCHHH
Q 047022 143 FFLFLDKSMTYSCAIFKSKHEDLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTG---CKYTGITLSELQ 219 (381)
Q Consensus 143 y~~~l~~~~~ys~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~---~~v~gvDis~~~ 219 (381)
|+-+......||..=|.... ..-| ...+++.+..+.-+.+-++-|-+||.|+++--+.--.+ ..|.+.|+++++
T Consensus 13 y~DfAsG~VL~sApG~p~FP--VRLA-sEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~a 89 (246)
T PF11599_consen 13 YEDFASGRVLYSAPGFPAFP--VRLA-SEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDA 89 (246)
T ss_dssp -CCCSTTTSS--BTTB------HHHH-HHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHH
T ss_pred hhhhcCCeEEecCCCCCCcc--HHHH-HHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHH
Confidence 45455555555544333322 1111 12223333444334556899999999998877654322 479999999999
Q ss_pred HHHHHHHHHH-----------------------------------------cCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 220 LKYAEIKVKE-----------------------------------------AGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 220 ~~~a~~~~~~-----------------------------------------~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
++.|++++.- .|-.....+... |..+..+.... ....
T Consensus 90 L~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~a-Dvf~~~~~~~~-~~~~ 167 (246)
T PF11599_consen 90 LELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRA-DVFDPSPLAVL-DAGF 167 (246)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE---TT-HHHHHHH-HTT-
T ss_pred HHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheee-cccCCchhhhh-ccCC
Confidence 9999986521 011112456666 66552210000 0224
Q ss_pred cccEEEEch----hhHhhC---hhcHHHHHHHHHhccccCceEEEEc
Q 047022 259 NFSTVFICG----MIEAVG---HDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 259 ~fD~Ivs~~----~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..|+|+.-- +..+-+ ..-...+++.++.+|-++++++++.
T Consensus 168 ~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 168 TPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp --SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 469998732 333333 1235688999999995555566644
No 373
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=89.91 E-value=1.1 Score=42.84 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCcc-
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMT- 253 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~- 253 (381)
..+.+.++.+||=.|+| .|..+..+++..|.+ +++++.+++..+.+++ .+.. .+. +..+.. .+.+.
T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~---~~~---~~~~~~~~~~i~~ 228 (343)
T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD---YTI---DAAEEDLVEKVRE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEe---cCCccCHHHHHHH
Confidence 44567889999999986 578888888888888 8899989887776643 2321 111 111100 00000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
......+|+|+.. ++. ...+..+.+.|+++|+++.
T Consensus 229 ~~~~~~vd~vld~-----~~~---~~~~~~~~~~l~~~g~~v~ 263 (343)
T cd08235 229 LTDGRGADVVIVA-----TGS---PEAQAQALELVRKGGRILF 263 (343)
T ss_pred HhCCcCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 0123459999875 221 2356667788999999654
No 374
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.78 E-value=1.2 Score=42.64 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=61.5
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc----cccCcCCc
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV----NCLKPTNM 252 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~----~~l~~~~l 252 (381)
...+.++.+||=.|||. |..+..+++..|.+ +++++.+++..+.+++ .|...-+..... +. ..+.
T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~~v~~~~~~-~~~~~i~~~~---- 233 (345)
T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGATDIVAERGE-EAVARVRELT---- 233 (345)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCceEecCCcc-cHHHHHHHhc----
Confidence 45667888888899874 77778888888875 8888888765554443 233100111100 11 1111
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 234 ---~~~~~d~il~~-----~g~---~~~~~~~~~~l~~~g~~v~~ 267 (345)
T cd08287 234 ---GGVGADAVLEC-----VGT---QESMEQAIAIARPGGRVGYV 267 (345)
T ss_pred ---CCCCCCEEEEC-----CCC---HHHHHHHHHhhccCCEEEEe
Confidence 23468999875 322 44677888999999996653
No 375
>PRK10083 putative oxidoreductase; Provisional
Probab=89.70 E-value=2.2 Score=40.77 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=61.5
Q ss_pred HHHHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCC
Q 047022 176 LIEKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTN 251 (381)
Q Consensus 176 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~ 251 (381)
+.....+.++++||=+|+|. |..+..+++. .|++ +++++.+++..+.+++. |...-+..... +..+ +.
T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~-~~~~~~~--- 223 (339)
T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQE-PLGEALE--- 223 (339)
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccc-cHHHHHh---
Confidence 34455678899999999875 6777777775 4874 88899888877776653 33111111111 1111 11
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
. ....+|+|+.. .+. ...+....+.|+++|+++.
T Consensus 224 --~-~g~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 224 --E-KGIKPTLIIDA-----ACH---PSILEEAVTLASPAARIVL 257 (339)
T ss_pred --c-CCCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 0 11235677764 221 3456777899999999664
No 376
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=89.51 E-value=3.4 Score=39.71 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccccCCCc
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~~~~~~ 259 (381)
.++.+||-.|+|. |..+..+++..|+ +|++++.+++..+.+++. |.. .+. +..+.. .+.+.....+.
T Consensus 174 ~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~---~~~~~~~~~~~~~~~~~~ 243 (350)
T cd08240 174 VADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVV---NGSDPDAAKRIIKAAGGG 243 (350)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEe---cCCCccHHHHHHHHhCCC
Confidence 4788999998874 7788888888888 789999988877777442 331 111 111110 00000011236
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 244 ~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 244 VDAVIDF-----VNN---SATASLAFDILAKGGKLVL 272 (350)
T ss_pred CcEEEEC-----CCC---HHHHHHHHHHhhcCCeEEE
Confidence 8999875 321 3457778899999999664
No 377
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.43 E-value=1.6 Score=40.69 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=74.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.|..|+-+| -.-..++.++.. ...+|..+|+++..++..++.+.+.|+. +++...- |.++.-|+. ...+||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~-Dlr~plpe~----~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVF-DLRNPLPED----LKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheee-hhcccChHH----HHhhCCe
Confidence 466799998 434444555443 4568999999999999999999998885 7888888 888765432 3488998
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccC---ceEEEEcCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAEN---GLSCSTVPD 300 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg---G~~~i~~~~ 300 (381)
++.- -.+.+ ..+..++.+=...||.- |++.++...
T Consensus 225 fiTD-PpeTi--~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 225 FITD-PPETI--KALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred eecC-chhhH--HHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 7764 22223 23466776666777766 557777643
No 378
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=89.31 E-value=1.8 Score=40.65 Aligned_cols=103 Identities=20% Similarity=0.235 Sum_probs=61.5
Q ss_pred HHcCCCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++.+||=.|+| .|..+..+++..|++ +++++-+++..+.+++ .|.. .+... .-..+. +.+..
T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~l~~~ 193 (312)
T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTD-DSEAIV-ERVREL 193 (312)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecC-CCcCHH-HHHHHH
Confidence 35567788999888875 377777778878888 9998888876664433 2331 11111 111110 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+++.. .+. ...+....+.|+++|.++..
T Consensus 194 ~~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~g~~~~~ 228 (312)
T cd08269 194 TGGAGADVVIEA-----VGH---QWPLDLAGELVAERGRLVIF 228 (312)
T ss_pred cCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 123569999875 221 33566678889999996643
No 379
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=88.99 E-value=1.4 Score=42.39 Aligned_cols=102 Identities=20% Similarity=0.224 Sum_probs=63.7
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++. |...-+.... . +.... +...
T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~-~~~~~----~~~~ 229 (345)
T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELAREL----GAVATVNASEVE-DVAAA----VRDL 229 (345)
T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHh----CCCEEEccccch-hHHHH----HHHH
Confidence 445567889999999864 7777888888899999999998887777432 4310011111 1 11100 0001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.+|+|+.. ++. ...+..+.+.|+++|.++.
T Consensus 230 ~~~~~d~vi~~-----~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 230 TGGGAHVSVDA-----LGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred hCCCCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 11369999876 321 3456677889999999654
No 380
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.96 E-value=1.2 Score=42.65 Aligned_cols=98 Identities=28% Similarity=0.293 Sum_probs=59.3
Q ss_pred CCCCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc-CC
Q 047022 181 KLVKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL-FL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~-~~ 257 (381)
.+.++.+||=.|+|. |..+..+++..| .++++++-+++..+.+++ .|.. .+. +......+.+... ..
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~---~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVL---NASDDVVEEVRELTGG 233 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEE---cCCccHHHHHHHHhCC
Confidence 356788999999764 666677777767 799999988887666643 2331 111 1111000000001 22
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+|+|+.. ++. ...++.+.+.|+++|+++.
T Consensus 234 ~~~dvvld~-----~g~---~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 234 RGADAVIDF-----VGS---DETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE
Confidence 469999875 321 3456777888999999664
No 381
>PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2. This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A ....
Probab=88.88 E-value=1.7 Score=33.79 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.4
Q ss_pred eeEEEecCCeEEEecCCCCCCCCceEEEEeChHHHHHhhhcCCcchhHhhhcCceEeccchhhH
Q 047022 9 IHSFLEESGIIYTFEGARKNCTLKTILRIHNPHFYWNVMIEADLGLADSYINGDFSFVHKYEGL 72 (381)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~e~y~~g~~~~~~~~~~l 72 (381)
.-.+.+.+|......+.. ..+.++|+.... .|.++ ..|.+.+.+++|.|...++||...+
T Consensus 35 ~~~l~~~~g~~~~~~~~~--~~~d~~i~~~~~-~~~~l-~~g~~~~~~a~~~gklki~Gd~~~~ 94 (102)
T PF02036_consen 35 AWYLDIKDGKLRVGEGDD--EEADVTITGSYE-DLLKL-LTGELDPMQAFMSGKLKIEGDLMLA 94 (102)
T ss_dssp EEEEEETTTTEEEEESSS--SS-SEEEEEEHH-HHHHH-HTTSS-HHHHHHTTSSEEEESHHHH
T ss_pred EEEEEEECCEEEEecCCC--CCCcEEEEEeHH-HHHHH-HcCCCCchhhhhCCcEEEEcCHHHH
Confidence 344555566544432222 235566666533 33344 4678999999999999999964333
No 382
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.65 E-value=3.1 Score=39.70 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=63.6
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EecCcc-ccCcCCcc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYI-FVITVN-CLKPTNMT 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~-~~~d~~-~l~~~~l~ 253 (381)
+....+.||++|--+|.| -|.++..+|+..|.+|+++|-+..-.+.+-+++ |...-+.+. .. |.. ++.
T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~-d~~~~~~----- 244 (360)
T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDP-DIMKAIM----- 244 (360)
T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCH-HHHHHHH-----
Confidence 344556799998888875 699999999999999999999976555554443 332112211 11 111 111
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE-EEcCCC
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC-STVPDQ 301 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~-i~~~~~ 301 (381)
.-.++-.|-|.+. - ...++.+.++||++|.++ +..|..
T Consensus 245 ~~~dg~~~~v~~~--a--------~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 245 KTTDGGIDTVSNL--A--------EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred HhhcCcceeeeec--c--------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 0112334444432 1 233556788999999954 556654
No 383
>PLN02494 adenosylhomocysteinase
Probab=88.65 E-value=2.1 Score=43.15 Aligned_cols=99 Identities=12% Similarity=0.186 Sum_probs=60.9
Q ss_pred HHHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcC
Q 047022 173 VSVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPT 250 (381)
Q Consensus 173 ~~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~ 250 (381)
++-+++..++ -.|++|+-+|+|+ |......++..|++|+++|.++.....+... |. .+ . +..+.-
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~v--v-~leEal-- 307 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QV--L-TLEDVV-- 307 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----ee--c-cHHHHH--
Confidence 4455555443 4689999999997 6665566665799999999988644333221 22 11 1 222221
Q ss_pred CccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 251 NMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 251 ~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...|+|++. .+ +...+.......+||||+++...
T Consensus 308 -------~~ADVVI~t-----TG--t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 308 -------SEADIFVTT-----TG--NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -------hhCCEEEEC-----CC--CccchHHHHHhcCCCCCEEEEcC
Confidence 357999874 21 12223467788999999976543
No 384
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.55 E-value=2.1 Score=41.99 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=62.3
Q ss_pred cCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc--cccCcCCcc-c
Q 047022 180 VKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV--NCLKPTNMT-E 254 (381)
Q Consensus 180 l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~--~~l~~~~l~-~ 254 (381)
..++++++||=.|||. |..++.+++..|+ ++++++.+++..+.+++. |+. .+ +... +. .... ..+. .
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~----g~~-~~-v~~~-~~~~~~~~-~~v~~~ 270 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEM----GAD-YV-FNPT-KMRDCLSG-EKVMEV 270 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCC-EE-Eccc-ccccccHH-HHHHHh
Confidence 4677899999889875 7777788888888 799999888765555542 432 11 1111 10 0000 0000 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. .+. ....+..+.+.|+++|+++..
T Consensus 271 ~~g~gvDvvld~-----~g~--~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 271 TKGWGADIQVEA-----AGA--PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred cCCCCCCEEEEC-----CCC--cHHHHHHHHHHHHcCCEEEEE
Confidence 123469999875 321 234567778889999996643
No 385
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=88.41 E-value=3.5 Score=39.47 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
..+.+.++.+||=.|||. |..+..+++..|.++++++.+++..+.+++. +.. .+... .-.... . ..
T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~-~~~~~~-~----~~ 229 (337)
T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIAT-KDPEAM-K----KA 229 (337)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecC-cchhhh-h----hc
Confidence 445677888888888864 7777778887889999999998877776432 321 11111 100110 0 01
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+.+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 230 ~~~~d~v~~~-----~g~---~~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 230 AGSLDLIIDT-----VSA---SHDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred cCCceEEEEC-----CCC---cchHHHHHHHhcCCCEEEEE
Confidence 3568999865 332 22456778899999996543
No 386
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=88.41 E-value=1.4 Score=42.40 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=59.0
Q ss_pred CCCCCEEEEecCC-chHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccccCCC
Q 047022 182 LVKGQEVLEIGCG-WGTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTELFLG 258 (381)
Q Consensus 182 ~~~~~~VLDiGcG-~G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~~~~~ 258 (381)
..++.+||-.|+| .|..+..+++..|.+ |++++-++...+.+++. +...-+..... +.. .+. ......
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~-~~~~~l~----~~~~~~ 229 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKE-DVVKEVA----DLTDGE 229 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEccccc-CHHHHHH----HhcCCC
Confidence 4578888888876 377778888878886 88888777666655443 32100111111 110 000 001235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 230 ~~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEM-----SGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHhhcCCCEEEEE
Confidence 69999876 221 34567788899999996543
No 387
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=88.07 E-value=4.5 Score=38.18 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=61.3
Q ss_pred HHHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-
Q 047022 177 IEKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT- 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~- 253 (381)
.+...+.++.+||-.|++ .|..+..+++..|.+++.++.+++..+.++.. +.. ..+... +..... .+.
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~--~~~~~~-~~~~~~--~~~~ 229 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GAD--YVIDYR-KEDFVR--EVRE 229 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--eEEecC-ChHHHH--HHHH
Confidence 345567788999998875 57777777777899999999988776665432 221 111111 110000 000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
......+|.++....- ..+..+.+.|+++|.++..
T Consensus 230 ~~~~~~~d~~i~~~g~---------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 230 LTGKRGVDVVVEHVGA---------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred HhCCCCCcEEEECCcH---------HHHHHHHHHhhcCCEEEEE
Confidence 0122468999876321 2345567788999996543
No 388
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=88.02 E-value=1.8 Score=42.12 Aligned_cols=113 Identities=26% Similarity=0.291 Sum_probs=65.9
Q ss_pred HHHHHHHHHc------CCCCCCEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEec
Q 047022 171 RKVSVLIEKV------KLVKGQEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVI 242 (381)
Q Consensus 171 ~~~~~l~~~l------~~~~~~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~ 242 (381)
..+.-+.... ..++|..||=+|.+. |.+++++|+..+...+....|.+-++.+++. |...-+++...
T Consensus 138 tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~vvdy~~~- 212 (347)
T KOG1198|consen 138 TALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEVVDYKDE- 212 (347)
T ss_pred HHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEeecCCCH-
Confidence 3344555555 678899999998764 7899999998775666677778877777665 42211222222
Q ss_pred CccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 243 TVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 243 d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
|+.+.. .......||+|+-+ ++. ......+...+++|+..+++...
T Consensus 213 ~~~e~~----kk~~~~~~DvVlD~-----vg~---~~~~~~~~~l~~~g~~~~i~~~~ 258 (347)
T KOG1198|consen 213 NVVELI----KKYTGKGVDVVLDC-----VGG---STLTKSLSCLLKGGGGAYIGLVG 258 (347)
T ss_pred HHHHHH----HhhcCCCccEEEEC-----CCC---CccccchhhhccCCceEEEEecc
Confidence 222221 01114679999986 432 12223345555666666665443
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.88 E-value=4.8 Score=38.26 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+|+=||+|. |......++..|++|+.+|.++...+.++. .|. ++. ++.++. ..-..+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G~----~~~---~~~~l~------~~l~~aDi 213 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MGL----SPF---HLSELA------EEVGKIDI 213 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC----eee---cHHHHH------HHhCCCCE
Confidence 578999999986 555555555578999999999875544432 232 221 222221 01256999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+.. ++. ...-+++.+.++||+.++
T Consensus 214 VI~t-----~p~---~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 214 IFNT-----IPA---LVLTKEVLSKMPPEALII 238 (296)
T ss_pred EEEC-----CCh---hhhhHHHHHcCCCCcEEE
Confidence 9985 221 223355667789988755
No 390
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.76 E-value=6.9 Score=36.60 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=63.6
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
...+.++++||=.|+ +.|..+..+++..|++|++++.+++..+.+++ .|.. .+ . . +..+.. ..+...
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~~--~-~-~~~~~~-~~i~~~- 205 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD-EV--V-I-DDGAIA-EQLRAA- 205 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc-EE--E-e-cCccHH-HHHHHh-
Confidence 344678899999986 46888899999889999999999887666643 2331 11 1 1 110110 001112
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+|+|+.. ++ ...+..+.+.|+++|+++..
T Consensus 206 ~~~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 206 PGGFDKVLEL-----VG----TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CCCceEEEEC-----CC----hHHHHHHHHHhccCCEEEEE
Confidence 3569999875 32 23466778999999996543
No 391
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=87.66 E-value=2.6 Score=39.33 Aligned_cols=100 Identities=24% Similarity=0.284 Sum_probs=60.5
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCcccc
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTEL 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~~ 255 (381)
...+.++.+||-.|| +.|..+..+++..|+++++++.++...+.+++. +...-+..... +..+ +. ...
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~~~~i~----~~~ 204 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GADHVIDYRDP-DLRERVK----ALT 204 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCceeeecCCc-cHHHHHH----HHc
Confidence 455678899999998 357777788887899999999998877766432 32110111111 1100 00 000
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|.++.. ++ ...+..+.+.++++|.++.
T Consensus 205 ~~~~~d~v~~~-----~g----~~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 205 GGRGVDVVYDP-----VG----GDVFEASLRSLAWGGRLLV 236 (323)
T ss_pred CCCCcEEEEEC-----cc----HHHHHHHHHhhccCCEEEE
Confidence 22468988875 22 1234556788899998554
No 392
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.09 E-value=4.8 Score=35.20 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=59.5
Q ss_pred EEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCC---------CCCeEEEEecCccccC
Q 047022 187 EVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGL---------QDTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl---------~~~i~~~~~~d~~~l~ 248 (381)
+|--||+|+ | .++..++. .|.+|+.+|.+++.++.+++++.. .+. ..++++. . |+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~-dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-T-DLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-S-SGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-c-CHHHHh
Confidence 466789987 3 44455555 599999999999999888877654 111 1234422 2 444332
Q ss_pred cCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
..|+|+-. +.|.+ +-..++|+++.+.+.|+-.+...+..
T Consensus 78 ----------~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 78 ----------DADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp ----------TESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred ----------hhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 57888765 12333 23578999999999999887765443
No 393
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.08 E-value=1.3 Score=41.93 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=69.5
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|.-||.|. |..+..+|--.|+.|+.+|+|..-++.....+. .+++..-. +...+. ..-.+.|+||
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~s-t~~~ie------e~v~~aDlvI 236 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYS-TPSNIE------EAVKKADLVI 236 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEc-CHHHHH------HHhhhccEEE
Confidence 4788899885 888877777689999999999887777766542 35666665 554443 1236789998
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..-.+. +.+.+.-..+++.+.+|||+.++
T Consensus 237 gaVLIp--gakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIP--GAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEec--CCCCceehhHHHHHhcCCCcEEE
Confidence 753332 22456778899999999999954
No 394
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.59 E-value=1.5 Score=41.75 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCCEEEEe--cCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cCCCc
Q 047022 184 KGQEVLEI--GCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LFLGN 259 (381)
Q Consensus 184 ~~~~VLDi--GcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~~~~ 259 (381)
++.++|=+ |+| .|..+..+++..|+++++++.+++..+.+++. |.. .+... +-.+.. +.+.. .....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~-~~~~~~-~~v~~~~~~~~ 212 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI----GAE---YVLNS-SDPDFL-EDLKELIAKLN 212 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEEEC-CCccHH-HHHHHHhCCCC
Confidence 34444443 655 48888888888899999999999877777652 322 11211 111110 00000 12246
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. ++. .......+.|+++|+++..
T Consensus 213 ~d~vid~-----~g~----~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 213 ATIFFDA-----VGG----GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CcEEEEC-----CCc----HHHHHHHHhhCCCCEEEEE
Confidence 8999864 332 1234457778999996543
No 395
>PLN02702 L-idonate 5-dehydrogenase
Probab=86.46 E-value=6.1 Score=38.30 Aligned_cols=105 Identities=18% Similarity=0.291 Sum_probs=63.2
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEE--EecCccc-cCcCCc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYI--FVITVNC-LKPTNM 252 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~--~~~d~~~-l~~~~l 252 (381)
....+.++.+||-+|+|. |..+..+++..|+. +++++.++...+.+++. |....+.+. .. +..+ +. .+
T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~-~~~~~~~--~~ 247 (364)
T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIE-DVESEVE--EI 247 (364)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccc-cHHHHHH--HH
Confidence 456677899999999864 77788888887874 78899887766655542 432111111 01 1110 00 00
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+.+|+|+.. ++. ...+..+.+.|+++|+++..
T Consensus 248 ~~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364)
T PLN02702 248 QKAMGGGIDVSFDC-----VGF---NKTMSTALEATRAGGKVCLV 284 (364)
T ss_pred hhhcCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 00112468999876 331 34577788899999996543
No 396
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.42 E-value=3.3 Score=40.52 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHH-------HHHHHHcCC-CC
Q 047022 164 DLEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYA-------EIKVKEAGL-QD 234 (381)
Q Consensus 164 ~l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a-------~~~~~~~gl-~~ 234 (381)
.+-+-+.+.+..+++.+.+.+++.-.|+|+|-|.+...++...++ .-+|+++...--+.+ ++..+..|- ..
T Consensus 172 ~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~ 251 (419)
T KOG3924|consen 172 TYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPN 251 (419)
T ss_pred chhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcC
Confidence 344455666778999999999999999999999999998876444 456777654322222 222233333 33
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.++.+.+ ++.+.. ... .-....++|+++++... +++.--+.++..-+++|-+++-+
T Consensus 252 ~~~~i~g-sf~~~~--~v~-eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 252 KIETIHG-SFLDPK--RVT-EIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred ceeeccc-ccCCHH--HHH-HHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEecc
Confidence 5667777 664422 000 11256788888876432 23333445777778888776543
No 397
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=86.34 E-value=2.2 Score=40.91 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=59.1
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc-cCCC
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE-LFLG 258 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~-~~~~ 258 (381)
.++++||-.|+|. |..+..+++..|. ++++++.+++..+.+++. |.. .+. ++.+.+ .+.+.. ....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~---~~~~~~~~~~~~~~~~~~ 231 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAV---NVAKEDLRDVMAELGMTE 231 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEe---cCccccHHHHHHHhcCCC
Confidence 4788888888875 7788888888887 688888888776665543 321 111 111100 000000 1235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+|+.. .+. ...+..+.+.|+++|.++..
T Consensus 232 ~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 232 GFDVGLEM-----SGA---PSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred CCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE
Confidence 68999874 221 34566678899999996654
No 398
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=86.33 E-value=12 Score=35.52 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=75.3
Q ss_pred HHHHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCc
Q 047022 175 VLIEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 175 ~l~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l 252 (381)
-+++.-.+++|++|+--|+ +.|...-++|+..|++|+|+--+++-.+++.+.+ |...-|++... |+.+. |
T Consensus 141 gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD~~idyk~~-d~~~~----L 212 (340)
T COG2130 141 GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFDAGIDYKAE-DFAQA----L 212 (340)
T ss_pred HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCceeeecCcc-cHHHH----H
Confidence 5566667788998887665 3689999999988999999999999888887643 43323444444 44221 1
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
++--.+..|+.+-+ ++ ...+..+...|++.+++.++
T Consensus 213 ~~a~P~GIDvyfeN-----VG----g~v~DAv~~~ln~~aRi~~C 248 (340)
T COG2130 213 KEACPKGIDVYFEN-----VG----GEVLDAVLPLLNLFARIPVC 248 (340)
T ss_pred HHHCCCCeEEEEEc-----CC----chHHHHHHHhhccccceeee
Confidence 11123778988876 65 45677788999999997665
No 399
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=86.26 E-value=7.6 Score=37.05 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=60.7
Q ss_pred HcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-c
Q 047022 179 KVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-L 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~ 255 (381)
...+.++.+||=.|+|. |..+..+++..|+ ++++++.+++....+++ .|.. .... +-.+.. ..+.. .
T Consensus 162 ~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~-~~~~~~-~~l~~~~ 231 (344)
T cd08284 162 RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE----PINF-EDAEPV-ERVREAT 231 (344)
T ss_pred hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe----EEec-CCcCHH-HHHHHHh
Confidence 35567889999888764 6777778887886 89999888766655544 2321 1111 111110 00000 1
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. .+. ...+....+.|+++|+++..
T Consensus 232 ~~~~~dvvid~-----~~~---~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 232 EGRGADVVLEA-----VGG---AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEE
Confidence 23569999875 221 34567778889999996643
No 400
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=86.23 E-value=6.5 Score=38.44 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=38.4
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHH
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEI 225 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~ 225 (381)
.....++++++||=+|+|. |..+..+++..|. +|+.++.++...+.+++
T Consensus 183 ~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~ 233 (373)
T cd08299 183 VNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE 233 (373)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4456678899999998874 6677777777888 79999999887777744
No 401
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.19 E-value=3.5 Score=39.23 Aligned_cols=130 Identities=13% Similarity=0.140 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCcc
Q 047022 168 GQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVN 245 (381)
Q Consensus 168 aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~ 245 (381)
+..+.++..+...-...-..|+-+|||-=+-+-.+-.-.+.+|.-+|. |+.++.=++.+++.+. +...+++.. |++
T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~-Dl~ 153 (297)
T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAV-DLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEec-ccc
Confidence 344556665555432335789999999755444443323467777776 5666766666666653 336788888 887
Q ss_pred ccC-cCCcc--ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 246 CLK-PTNMT--ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 246 ~l~-~~~l~--~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+-. +..|. ++....--++++-+++.+++.+...++|+.+.....||-.++...+
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 322 11111 2234455678899999999998999999999999999999877754
No 402
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.17 E-value=6.2 Score=37.52 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=52.0
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
.+|.=||+|. | .++..+.+ .+ .+|+++|.+++..+.+++ .|+.+ . ... +..+.. ...|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~-~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~-~~~~~~---------~~aD 68 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR-LGLAGEIVGADRSAETRARARE----LGLGD--R-VTT-SAAEAV---------KGAD 68 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh-cCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecC-CHHHHh---------cCCC
Confidence 5799999996 3 34444444 35 489999999887665543 23211 1 112 222211 4579
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
+|+.. ++......+++.+...++||..++
T Consensus 69 vViia-----vp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 69 LVILC-----VPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred EEEEC-----CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 98887 443334566777777788887543
No 403
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=86.05 E-value=2.7 Score=40.10 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=61.6
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....++++++||=.|||. |..+..+++. .|.++++++-+++..+.+++. |.. .+ +... +..... +.+...
T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~-~v-~~~~-~~~~~~-~~v~~~ 227 (338)
T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD-LT-INSK-RVEDVA-KIIQEK 227 (338)
T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc-EE-eccc-ccccHH-HHHHHh
Confidence 455678999999999864 7778888886 499999999999888887542 331 11 1110 000000 000001
Q ss_pred CCCcccE-EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFST-VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~-Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. +.+|. +++. .. ...++.+.+.|+++|.++..
T Consensus 228 ~-~~~d~vi~~~-----~~----~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 228 T-GGAHAAVVTA-----VA----KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred c-CCCcEEEEeC-----CC----HHHHHHHHHhccCCCEEEEE
Confidence 1 24784 4433 11 34577788899999996643
No 404
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.00 E-value=5 Score=37.81 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=58.0
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCCC---------CCeEEEEecCccccC
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGLQ---------DTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl~---------~~i~~~~~~d~~~l~ 248 (381)
+|.=||+|. +.++..+++ .|.+|+.+|.+++.++.+.++... .+.- .++++. . ++.+.-
T Consensus 3 ~V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~~~~~~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-L-DLKAAV 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C-cHHHhh
Confidence 688899985 344555555 488999999999999887764321 1100 112211 2 332221
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEEEcC
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...|+|+.. ++.. -...++.++.+.++|+..+.+.+.
T Consensus 80 ---------~~aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~tS 118 (288)
T PRK09260 80 ---------ADADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNTS 118 (288)
T ss_pred ---------cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 457988865 3322 134677888888988876655443
No 405
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=85.99 E-value=5 Score=37.63 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=53.7
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
+|.=||+|. |.++..+.+ .|.+|+++|.+++.++.+.+. |. +..... +.. . ....|+|+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~-~~~-~---------~~~aDlVi 62 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRESTCERAIER----GL---VDEAST-DLS-L---------LKDCDLVI 62 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHC----CC---cccccC-CHh-H---------hcCCCEEE
Confidence 577789985 456666666 488999999998877666543 32 111111 221 1 14579998
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
.. ++......+++++...++|+..+
T Consensus 63 la-----vp~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 63 LA-----LPIGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred Ec-----CCHHHHHHHHHHHHHhCCCCcEE
Confidence 87 55445567788888888777543
No 406
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=85.74 E-value=3.6 Score=40.24 Aligned_cols=108 Identities=17% Similarity=0.080 Sum_probs=64.9
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~ 254 (381)
....+.++++||-.|||. |..+..+++..|. +++++|.+++..+.+++. |.. -+..... +. ..+. .
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~~-~v~~~~~-~~~~~i~-----~ 238 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GAI-PIDFSDG-DPVEQIL-----G 238 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCe-EeccCcc-cHHHHHH-----H
Confidence 455677899998899874 7777888887786 788999988777666543 321 0111111 11 0110 0
Q ss_pred cCCCcccEEEEchhh---HhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMI---EAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l---~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+..-.- ++.+..+....+..+.++|+++|.+..
T Consensus 239 ~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 239 LEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred hhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 112468999875221 111111234567888999999999754
No 407
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.50 E-value=11 Score=38.59 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCEEEEecCCchHHHHHHHHhc--C---CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEecCccccCcCCccccCC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT--G---CKYTGITLSELQLKYAEIKVKEAGLQD-TSDYIFVITVNCLKPTNMTELFL 257 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~--~---~~v~gvDis~~~~~~a~~~~~~~gl~~-~i~~~~~~d~~~l~~~~l~~~~~ 257 (381)
|+..|.|..||+|++.....+.. + ..++|.+..+.+...++.++.-.+... ......+ |....+ . ....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~-dtl~~~-d---~~~~ 291 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA-DTLTTK-E---WENE 291 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC-CcCCCc-c---cccc
Confidence 66899999999999987655431 2 468999999999999998865555431 2333333 322111 0 0122
Q ss_pred CcccEEEEchhhH--------------------hh-Ch--hcHHHHHHHHHhccccCceEEEEcCC
Q 047022 258 GNFSTVFICGMIE--------------------AV-GH--DYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 258 ~~fD~Ivs~~~l~--------------------~~-~~--~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.+||.|+++--+. |+ ++ ..-..++..+...|++||+..+..+.
T Consensus 292 ~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 292 NGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred ccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 4578877643111 11 10 11235778889999999996665554
No 408
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.87 E-value=13 Score=34.54 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=57.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHhc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQT------GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~~------~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+.+...++|+|||.|.++.++++.. ...++.||-...-. .+..++........++=... |++++....+...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~ri-DI~dl~l~~~~~~ 93 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRI-DIKDLDLSKLPEL 93 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEE-Eeeccchhhcccc
Confidence 4677899999999999999998863 35789999865433 33333433321123444455 6666652221111
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccc
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLA 289 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lk 289 (381)
. ....-++.+ --|+.-...+-.++.+.+..+
T Consensus 94 ~-~~~~~vv~i--sKHLCG~ATDlaLRcl~~~~~ 124 (259)
T PF05206_consen 94 Q-NDEKPVVAI--SKHLCGAATDLALRCLLNSQK 124 (259)
T ss_pred c-CCCCcEEEE--EccccccchhHHHHhhccCcc
Confidence 1 122223322 124433345666777766665
No 409
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=84.65 E-value=2.2 Score=40.31 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
....+.++.+||=.|+ | .|..+..+|+..|++++.+.-+++..+.+++. |.. .+... +-.... +.+..
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~-~~~~~~-~~i~~~ 203 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL----GIG---PVVST-EQPGWQ-DKVREA 203 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc----CCC---EEEcC-CCchHH-HHHHHH
Confidence 3456778999999886 3 58888889988999998888777766655432 331 11111 100000 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.....+|+|+.. ++. ..+..+.+.|+++|+++..
T Consensus 204 ~~~~~~d~v~d~-----~g~----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 204 AGGAPISVALDS-----VGG----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred hCCCCCcEEEEC-----CCC----hhHHHHHHhhcCCcEEEEE
Confidence 122469999875 432 2346778899999996643
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.41 E-value=2 Score=42.20 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=56.1
Q ss_pred CCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
++.+|+=+|+|. |..+...++..|++|+.+|.+++.++.+.... + ..+..... +...+. . .-..+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~-~~~~l~-----~-~l~~aDv 233 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYS-NAYEIE-----D-AVKRADL 233 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccC-CHHHHH-----H-HHccCCE
Confidence 346799999984 77777777778899999999987655544332 1 11221112 222221 0 1146899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|++.-.+. +...+.-+-+++.+.++|++.++
T Consensus 234 VI~a~~~~--g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 234 LIGAVLIP--GAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred EEEccccC--CCCCCcCcCHHHHhcCCCCCEEE
Confidence 99753211 11111112355667789998855
No 411
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.34 E-value=14 Score=34.40 Aligned_cols=92 Identities=22% Similarity=0.229 Sum_probs=61.6
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.+...++.+||=.|+ +.|..+..+++..|+++++++.+++..+.+++. |.. ... . +..++.
T Consensus 127 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~-~-~~~~~~-------- 189 (305)
T cd08270 127 RGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLREL----GAA---EVV-V-GGSELS-------- 189 (305)
T ss_pred HhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCc---EEE-e-cccccc--------
Confidence 334446899999988 357888888888899999999888877776542 332 111 1 222222
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.+.+|+++.. ++. ..+....+.|+++|+++.
T Consensus 190 ~~~~d~vl~~-----~g~----~~~~~~~~~l~~~G~~v~ 220 (305)
T cd08270 190 GAPVDLVVDS-----VGG----PQLARALELLAPGGTVVS 220 (305)
T ss_pred CCCceEEEEC-----CCc----HHHHHHHHHhcCCCEEEE
Confidence 2468999875 332 246778899999999654
No 412
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.25 E-value=12 Score=34.97 Aligned_cols=92 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred EEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHH-------HHcCCC---------CCeEEEEecCccccC
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKV-------KEAGLQ---------DTSDYIFVITVNCLK 248 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~-------~~~gl~---------~~i~~~~~~d~~~l~ 248 (381)
+|-=||+|. +.++..+++. |.+|+++|++++.++.+++++ .+.+.- .++++ .. |+..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~-~~~~~- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TT-DLDDL- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eC-CHHHh-
Confidence 688899996 4555666664 889999999999887665432 222211 02221 12 33221
Q ss_pred cCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEE
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. +++. -...+++++.+.++|+..+..
T Consensus 81 ---------~~aDlVi~a-----v~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 ---------KDADLVIEA-----ATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ---------ccCCeeeec-----ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888876 3321 235889999999999877643
No 413
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.24 E-value=9.8 Score=35.76 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=53.5
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEecCccccCcCCccccCCCccc
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ---DTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~---~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+|+=||||. |. ++..+++ .|.+|+.++.+++.++..++. ++. ........ -..+.. ....+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~-~~~~~~-------~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVL-AADDPA-------ELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeeccc-CCCChh-------HcCCCC
Confidence 688899986 33 4444555 488999999877665544432 331 11110000 011111 126789
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+|+.. ++..+...+++.+...+.++..++.
T Consensus 69 ~vila-----~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 69 LVILA-----VKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEEEe-----cccccHHHHHHHHhhhcCCCCEEEE
Confidence 98886 4444567888888888877765443
No 414
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.19 E-value=8.7 Score=36.70 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=60.0
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||=.|+ | .|..+..+++..|+++++++.+. ..+.+++ .|.. .+... +-.... + ....
T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~~---~~~~~-~~~~~~-~-~~~~ 239 (350)
T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGAD---TVILR-DAPLLA-D-AKAL 239 (350)
T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCCe---EEEeC-CCccHH-H-HHhh
Confidence 4556788999999997 3 47888888888899998888554 4444432 2431 11111 110000 0 0001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+|+.. ++ ...+..+.+.|+++|.++.
T Consensus 240 ~~~~~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 240 GGEPVDVVADV-----VG----GPLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred CCCCCcEEEec-----CC----HHHHHHHHHHhccCCEEEE
Confidence 23569999875 32 1246677889999999653
No 415
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.04 E-value=3.4 Score=39.49 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=61.9
Q ss_pred cCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc-c
Q 047022 180 VKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE-L 255 (381)
Q Consensus 180 l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~-~ 255 (381)
+.+.++.+||=.|++ .|..+..+++..|.+++.++.+++..+.+++ .|.. .+. +..... ...+.. .
T Consensus 161 ~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~---~~~~~~~~~~~~~~~ 230 (341)
T cd08297 161 AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFV---DFKKSDDVEAVKELT 230 (341)
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEE---cCCCccHHHHHHHHh
Confidence 467789999999885 5888888888889999999999877666533 2321 111 111100 000000 1
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..+.+|+|+... . -...+..+.+.|+++|+++..
T Consensus 231 ~~~~vd~vl~~~----~----~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 GGGGAHAVVVTA----V----SAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred cCCCCCEEEEcC----C----chHHHHHHHHHhhcCCEEEEe
Confidence 235699998521 1 133456678889999996644
No 416
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=83.87 E-value=5.4 Score=37.69 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=58.8
Q ss_pred CCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 184 KGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 184 ~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
++.+||=+|+ | .|..+..+|+..|.++++++.+++..+.+++. |.. .+. +..+...+.+.......+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~---~~~~~~~~~~~~~~~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL----GAK---EVI---PREELQEESIKPLEKQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc----CCC---EEE---cchhHHHHHHHhhccCCcC
Confidence 4679999987 4 47888888888899999999998877766432 331 111 1111100000011235689
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+.. ++ ...++...+.|+++|+++..
T Consensus 216 ~vld~-----~g----~~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 216 GAVDP-----VG----GKTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred EEEEC-----Cc----HHHHHHHHHHhhcCCEEEEE
Confidence 88865 32 23456778889999996543
No 417
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.83 E-value=6.5 Score=37.87 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=60.0
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEecCccccCcCC
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGLQ-----DTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl~-----~~i~~~~~~d~~~l~~~~ 251 (381)
.+|--||+|+ ..++..++. .|.+|+..|++++.++.+++++.. .++. .++++. . ++.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~-~l~~a---- 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-A-TIEAC---- 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-C-CHHHH----
Confidence 5788999996 345555665 599999999999988776654431 2211 122221 1 22211
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
-...|+|+-. +.|.+ +-...+++++.+.++|+..+..++
T Consensus 81 -----v~~aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 81 -----VADADFIQES-APERE--ALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred -----hcCCCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEECC
Confidence 1456888775 22222 124578899999999997555443
No 418
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.50 E-value=7 Score=37.46 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=55.9
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH------cCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKE------AGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~------~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.=||||. |. ++..+++ .|..|+.++.+++.++..++.-.. ..++.++.+. . |..+. ..+
T Consensus 2 kI~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~-~~~~~--------~~~ 70 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-KKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-S-AIDEV--------LSD 70 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-C-CHHHH--------HhC
Confidence 578899984 54 5555555 478899999888766655542100 0011112221 1 22111 114
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHh-ccccCceEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCES-LLAENGLSCS 296 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~-~LkpgG~~~i 296 (381)
.+|+|+.. +++.+...+++++.. .++++..+++
T Consensus 71 ~~Dliiia-----vks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 71 NATCIILA-----VPTQQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CCCEEEEE-----eCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 68988887 666667888888887 8887765443
No 419
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=83.38 E-value=3.2 Score=39.93 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=60.3
Q ss_pred HHcCCCCCCEEEEecCCc-hHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-cCCccc
Q 047022 178 EKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-PTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~~~l~~ 254 (381)
+...+.++.+||=.|+|. |..+..+++..|+ .+++++-+++..+.+.+. |.. . +. +..... .+.+..
T Consensus 168 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~-~--v~---~~~~~~~~~~~~~ 237 (350)
T cd08256 168 DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKF----GAD-V--VL---NPPEVDVVEKIKE 237 (350)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHc----CCc-E--Ee---cCCCcCHHHHHHH
Confidence 455677888888888764 7777888888776 478888887766555432 331 1 11 111100 000000
Q ss_pred c-CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 L-FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~-~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
. ....+|+|+.. ++. ...+..+.+.|+++|+++.
T Consensus 238 ~~~~~~vdvvld~-----~g~---~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 238 LTGGYGCDIYIEA-----TGH---PSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred HhCCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEE
Confidence 1 12458999875 432 2346778899999999654
No 420
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.34 E-value=3.1 Score=38.75 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=61.9
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE- 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~- 254 (381)
+...+.++.+||=.|+ | .|..+..+++..|.++++++.+++..+.+++ .|.. .+... +-.... +.+..
T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~~ 200 (320)
T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINY-RDEDFV-ERVREI 200 (320)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeC-CchhHH-HHHHHH
Confidence 3455678899999994 3 5788888888889999999998887776643 2331 11111 100100 00000
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. ++. ..+..+.+.|+++|.++.
T Consensus 201 ~~~~~~d~vl~~-----~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 201 TGGRGVDVVYDG-----VGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred cCCCCeeEEEEC-----CCc----HhHHHHHHhhccCcEEEE
Confidence 123469999875 321 245567788999999553
No 421
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.22 E-value=6.4 Score=37.08 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=55.2
Q ss_pred CEEEEecCCc--hHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|+=+|.|- |.++..+.++ ....+++.|.+....+.+.+. |+.+ ....+... . .....|+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv~d----~~~~~~~~-~-------~~~~aD~ 67 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GVID----ELTVAGLA-E-------AAAEADL 67 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cccc----ccccchhh-h-------hcccCCE
Confidence 5788899885 5555555554 334578899888877666543 3321 11101101 1 2256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
|+.. +|-.....+++++...|+||..+
T Consensus 68 Viva-----vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 68 VIVA-----VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEEe-----ccHHHHHHHHHHhcccCCCCCEE
Confidence 9887 55556688888888888888664
No 422
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=83.06 E-value=3 Score=41.03 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=37.9
Q ss_pred cCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHH
Q 047022 180 VKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEI 225 (381)
Q Consensus 180 l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~ 225 (381)
..+.++++||=.|+ | .|..+..+++..|+++++++.+++..+.+++
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 35678899999997 4 4788888888889999999999988887765
No 423
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.63 E-value=9.9 Score=35.81 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=56.6
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEecCc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA----------GL---------QDTSDYIFVITV 244 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~----------gl---------~~~i~~~~~~d~ 244 (381)
.+|.=||||. | .++..++. .|.+|+.+|.+++.++.+++++... +. ..++.+. . |.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~-~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-T-SY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-C-CH
Confidence 4788899995 3 44555555 4889999999999988776644321 11 0111111 1 22
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEE
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~ 295 (381)
..+ ...|+|+.. ++.. ....+++++.+.++|+..++
T Consensus 81 ~~~----------~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 ESL----------SDADFIVEA-----VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred HHh----------CCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 111 346888876 4322 24678888888888887654
No 424
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=82.38 E-value=11 Score=36.98 Aligned_cols=118 Identities=14% Similarity=0.211 Sum_probs=68.8
Q ss_pred HHHHHHcCCCCCCEEEEecCCchH----HHHHHHHhc----CCEEEEEcC----CHHHHHHHHHHH----HHcCCCCCeE
Q 047022 174 SVLIEKVKLVKGQEVLEIGCGWGT----LAIEIVRQT----GCKYTGITL----SELQLKYAEIKV----KEAGLQDTSD 237 (381)
Q Consensus 174 ~~l~~~l~~~~~~~VLDiGcG~G~----~~~~la~~~----~~~v~gvDi----s~~~~~~a~~~~----~~~gl~~~i~ 237 (381)
+.|++.+.-.+.-+|+|+|.|.|. +...++.++ ..++|+|+. +...++.+.+++ +..|++ .+
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE
Confidence 367777776777899999999885 444455542 258999999 776676666554 344654 44
Q ss_pred EEE---ecCccccCcCCccccCCCcccEEEEchhhHhhChh-----c-HHHHHHHHHhccccCceEEE
Q 047022 238 YIF---VITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHD-----Y-MEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 238 ~~~---~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~-----~-~~~~l~~~~~~LkpgG~~~i 296 (381)
|.. . +.+++.+..+. ...+..=+|-|...++|+.++ + ...+++. .+.|+|.-.+++
T Consensus 178 f~~v~~~-~~e~l~~~~l~-~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~ 242 (374)
T PF03514_consen 178 FHPVVVE-SLEDLDPSMLR-LRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLV 242 (374)
T ss_pred EEecccC-chhhCCHHHhC-ccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEE
Confidence 444 2 44444322211 122333344456677888632 2 2345554 457899955433
No 425
>PRK13699 putative methylase; Provisional
Probab=82.22 E-value=5.4 Score=36.31 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.5
Q ss_pred HHHHHHHHHhccccCceEEEE
Q 047022 277 MEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 277 ~~~~l~~~~~~LkpgG~~~i~ 297 (381)
...+++++.|+|||||.+++.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEE
Confidence 467889999999999987653
No 426
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=81.97 E-value=11 Score=35.98 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=61.8
Q ss_pred HHHcCCCCCCEEEEecCCc-hHHHHHHHHhcCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC-c--CC
Q 047022 177 IEKVKLVKGQEVLEIGCGW-GTLAIEIVRQTGCK-YTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK-P--TN 251 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~-v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~-~--~~ 251 (381)
+....++++.+||=.|+|. |..+..+++..|++ +++++.+++..+.+++. +.. .+... +-.+.. . .-
T Consensus 154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~i~~-~~~~~~~~~~~~ 225 (341)
T cd08262 154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAM----GAD---IVVDP-AADSPFAAWAAE 225 (341)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEEcC-CCcCHHHHHHHH
Confidence 3456678899999998764 67777778777875 78888888877766543 321 11111 100000 0 00
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
......+.+|+|+.. ++. ...+..+.+.|+++|.++..
T Consensus 226 ~~~~~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~g~~v~~ 263 (341)
T cd08262 226 LARAGGPKPAVIFEC-----VGA---PGLIQQIIEGAPPGGRIVVV 263 (341)
T ss_pred HHHhCCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEE
Confidence 000123569999865 321 23566678889999996654
No 427
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.70 E-value=4.8 Score=33.83 Aligned_cols=52 Identities=6% Similarity=0.129 Sum_probs=32.6
Q ss_pred EecCCch--HHHHHHHH--h-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCCeEEEEe
Q 047022 190 EIGCGWG--TLAIEIVR--Q-TGCKYTGITLSELQLKYAEIK--VKEAGLQDTSDYIFV 241 (381)
Q Consensus 190 DiGcG~G--~~~~~la~--~-~~~~v~gvDis~~~~~~a~~~--~~~~gl~~~i~~~~~ 241 (381)
|||+..| .....+.. . ++.+|+++|++|...+..+++ +.-......+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 66655542 2 568999999999999998888 554433334666665
No 428
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=81.67 E-value=3.3 Score=39.02 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=59.0
Q ss_pred CCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc-cccCcCCccccCC
Q 047022 181 KLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV-NCLKPTNMTELFL 257 (381)
Q Consensus 181 ~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~-~~l~~~~l~~~~~ 257 (381)
.+.++.+||=.|++ .|..+..+++..|+++++++-+++..+.+++ .|...-+..... +. ..+. .....
T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~----~~~~~ 205 (323)
T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGADEVIDSSPE-DLAQRVK----EATGG 205 (323)
T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCCEEecccch-hHHHHHH----HHhcC
Confidence 45688999998873 5888888888889999999888877666643 233100011100 11 0010 00123
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+|+|+.. ++. . ....+.+.|+++|+++.
T Consensus 206 ~~~d~vl~~-----~g~---~-~~~~~~~~l~~~g~~v~ 235 (323)
T cd05282 206 AGARLALDA-----VGG---E-SATRLARSLRPGGTLVN 235 (323)
T ss_pred CCceEEEEC-----CCC---H-HHHHHHHhhCCCCEEEE
Confidence 469999876 332 1 23455688999999653
No 429
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.48 E-value=4.8 Score=37.36 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred HHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcH
Q 047022 199 AIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYM 277 (381)
Q Consensus 199 ~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~ 277 (381)
+..+.++ +..+|+|+|.++..++.|.+. |+.+ -... +...+ ..+|+|+.. +|....
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~-~~~~~----------~~~Dlvvla-----vP~~~~ 58 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EAST-DIEAV----------EDADLVVLA-----VPVSAI 58 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEES-HHHHG----------GCCSEEEE------S-HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccC-CHhHh----------cCCCEEEEc-----CCHHHH
Confidence 4455554 348999999999988777654 4432 1222 21111 457999987 454556
Q ss_pred HHHHHHHHhccccCceEE
Q 047022 278 EELFSCCESLLAENGLSC 295 (381)
Q Consensus 278 ~~~l~~~~~~LkpgG~~~ 295 (381)
..+++++...+++|+.+.
T Consensus 59 ~~~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHHCGS-TTSEEE
T ss_pred HHHHHHhhhhcCCCcEEE
Confidence 788888888888877644
No 430
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=81.41 E-value=4.1 Score=38.40 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=63.1
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.....+.++.+||=.|+ +.|..+..+++..|.++++++.+++..+.+++ .+.. .+... .-.... +.+..
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~ 205 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDY-TRPDWP-DQVRE 205 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEec-CCccHH-HHHHH
Confidence 44556778899999984 45888888888889999999988887776643 2331 11111 100100 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+|+.. ++. . ....+.+.|+++|.++.
T Consensus 206 ~~~~~~~d~vl~~-----~g~---~-~~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 206 ALGGGGVTVVLDG-----VGG---A-IGRAALALLAPGGRFLT 239 (324)
T ss_pred HcCCCCceEEEEC-----CCh---H-hHHHHHHHhccCcEEEE
Confidence 122469999876 332 1 34677889999999654
No 431
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=81.23 E-value=11 Score=39.91 Aligned_cols=98 Identities=7% Similarity=-0.013 Sum_probs=62.5
Q ss_pred CCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ...+..+ |..+.. -+.+..-++.|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~G-Dat~~~--~L~~agi~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYG-DATRMD--LLESAGAAKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEE-eCCCHH--HHHhcCCCcCCEE
Confidence 35899999985 6555444444578999999999988887652 3567888 887653 1111123578888
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. .++++.....-...+.+.|+-.++...
T Consensus 469 vv~-----~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 469 INA-----IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred EEE-----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 876 443333344444555567776665544
No 432
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=81.19 E-value=13 Score=35.22 Aligned_cols=96 Identities=23% Similarity=0.262 Sum_probs=62.6
Q ss_pred HHcCCCCCCEEEEecCC--chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGCG--WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGcG--~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
..+.+.++.+||=.|++ .|..+..+++..|.++++++.+++..+.+++. ...-+..+ . ....+. ..
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~-~~~~v~-----~~ 223 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-----K-FSEEVK-----KI 223 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-----h-HHHHHH-----hc
Confidence 33467789999999983 58888888888899999999998888877553 21111100 1 111111 11
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
+.+|+++.. .+. ..+..+.+.|+++|.++.
T Consensus 224 --~~~d~~ld~-----~g~----~~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 224 --GGADIVIET-----VGT----PTLEESLRSLNMGGKIIQ 253 (334)
T ss_pred --CCCcEEEEc-----CCh----HHHHHHHHHHhcCCEEEE
Confidence 258988875 321 235677888999999554
No 433
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=81.19 E-value=8.5 Score=36.33 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcC--CHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCc
Q 047022 177 IEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITL--SELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNM 252 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDi--s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l 252 (381)
.....+.++.+||-.|+| .|..+..+++..|.+++.+.. +.+..+.+++. |+. .+..... ++.+ +.
T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~----g~~-~~~~~~~-~~~~~l~---- 226 (306)
T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKEL----GAD-AVNGGEE-DLAELVN---- 226 (306)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHh----CCc-ccCCCcC-CHHHHHH----
Confidence 344566788888887765 477777888888888877643 33334433332 331 1111111 2111 10
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.......+|+++.. ++. ...+....+.|+++|.++..
T Consensus 227 ~~~~~~~vd~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 263 (306)
T cd08258 227 EITDGDGADVVIEC-----SGA---VPALEQALELLRKGGRIVQV 263 (306)
T ss_pred HHcCCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEE
Confidence 00123569999876 221 34667778889999996643
No 434
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.03 E-value=6 Score=41.56 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=61.4
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|+=+|+|. |........+.+.+++.+|.+++.++.+++. ...+..+ |..+.. -+..-.-++.|.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~G-Dat~~~--~L~~agi~~A~~vv 469 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYG-DATQLE--LLRAAGAEKAEAIV 469 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEe-eCCCHH--HHHhcCCccCCEEE
Confidence 4688777774 4443333333578999999999988877652 3567888 887642 11112236788888
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
+. .++++.....-...+.+.|...++....+
T Consensus 470 ~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 470 IT-----CNEPEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred EE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 86 44333333344445567788877765544
No 435
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=80.95 E-value=9.2 Score=36.32 Aligned_cols=95 Identities=24% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCEEEEecC--CchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 185 GQEVLEIGC--GWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 185 ~~~VLDiGc--G~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
+.+||=.|+ +.|..+..+++.. |++|++++-+++..+.+++ .|.. .+... + .... ..+.....+.+|
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~---~~~~~-~-~~~~-~~i~~~~~~~vd 218 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAH---HVIDH-S-KPLK-AQLEKLGLEAVS 218 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----cCCC---EEEEC-C-CCHH-HHHHHhcCCCCC
Confidence 889999885 4588888888876 8999999988887766643 2331 11211 1 0110 000011234699
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+.. ++. ...+..+.++|+++|+++..
T Consensus 219 ~vl~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 219 YVFSL-----THT---DQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred EEEEc-----CCc---HHHHHHHHHHhccCCEEEEE
Confidence 98864 211 34466778899999996643
No 436
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.73 E-value=7.3 Score=34.41 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccC
Q 047022 170 IRKVSVLIEKVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLK 248 (381)
Q Consensus 170 ~~~~~~l~~~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~ 248 (381)
..|.+.+........+..||-+|+- ||.+...+..+ .++|+.+|+.|.+... ++.+++|... ..
T Consensus 30 ~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~---~~-- 94 (254)
T COG4017 30 KKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL---LK-- 94 (254)
T ss_pred HHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh---cC--
Confidence 3444455544555677899999996 78888777765 8899999999986543 3445666654 11
Q ss_pred cCCccccCCCcccEEEEchhhHhh
Q 047022 249 PTNMTELFLGNFSTVFICGMIEAV 272 (381)
Q Consensus 249 ~~~l~~~~~~~fD~Ivs~~~l~~~ 272 (381)
+..+.+|+|+-.-.+.-+
T Consensus 95 ------~~~G~~DlivDlTGlGG~ 112 (254)
T COG4017 95 ------FIRGEVDLIVDLTGLGGI 112 (254)
T ss_pred ------CCCCceeEEEeccccCCC
Confidence 244889999987665555
No 437
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=80.64 E-value=8 Score=30.05 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCC
Q 047022 223 AEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQC 302 (381)
Q Consensus 223 a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~ 302 (381)
.++.+...|++ +++... +..+.. .....||+|+.. .+....+.++.+.+.+.+.-+...+...
T Consensus 19 i~~~~~~~~~~--~~v~~~-~~~~~~------~~~~~~Diil~~--------Pqv~~~~~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 19 MKKAAEKRGID--AEIEAV-PESELE------EYIDDADVVLLG--------PQVRYMLDEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHCCCc--eEEEEe-cHHHHH------HhcCCCCEEEEC--------hhHHHHHHHHHHHhccCCCcEEEcChHh
Confidence 45556666764 777777 766654 123679999986 3456667778877777777566666555
Q ss_pred CCC
Q 047022 303 YDE 305 (381)
Q Consensus 303 ~~~ 305 (381)
|..
T Consensus 82 Y~~ 84 (96)
T cd05564 82 YGM 84 (96)
T ss_pred ccc
Confidence 543
No 438
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.53 E-value=6.4 Score=33.46 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=56.5
Q ss_pred EEEEecCCchHHHHH--HHHhcCCEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGWGTLAIE--IVRQTGCKYTGITLSELQLKYAEIKVKEA------GLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~--la~~~~~~v~gvDis~~~~~~a~~~~~~~------gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.-||+|.++.++. ++. .+.+|+..+.+++.++..++.-... .++.++.+ .. |..+.- .
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~-dl~~a~---------~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TT-DLEEAL---------E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ES-SHHHHH---------T
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-cc-CHHHHh---------C
Confidence 467789996554443 344 4779999999998887776643211 11223332 23 443322 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
..|+|+.. +|....+.+++++...|+++-.+++.
T Consensus 69 ~ad~Iiia-----vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 69 DADIIIIA-----VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp T-SEEEE------S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred cccEEEec-----ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 56888876 66566788999999999666555543
No 439
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=80.47 E-value=17 Score=34.60 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=53.1
Q ss_pred EEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CCC-----CCeEEEEecCccccCcCCccccCCC
Q 047022 187 EVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GLQ-----DTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 187 ~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl~-----~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
+|.=||+|. | .++..+++ .|..|+.++.++..++..++..... ... .++.. .. +..+.. .
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---------~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TT-DLAEAL---------A 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eC-CHHHHH---------h
Confidence 688889985 3 44445555 4789999999987766555431000 000 01111 11 221111 4
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..|+|+.. ++......+++.+...++|+..++
T Consensus 71 ~~D~vi~~-----v~~~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 71 DADLILVA-----VPSQALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred CCCEEEEe-----CCHHHHHHHHHHHHhhcCCCCEEE
Confidence 57998887 444456777888888888876543
No 440
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=80.36 E-value=4.1 Score=41.20 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=57.9
Q ss_pred HHHHHHcCC-CCCCEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC
Q 047022 174 SVLIEKVKL-VKGQEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN 251 (381)
Q Consensus 174 ~~l~~~l~~-~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~ 251 (381)
+.+++.-+. -.|.+|+=+|+|+ |......++..|++|+++|.++.....+.. .| ++ .. +..++-
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~--~~-~leell--- 307 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQ--VV-TLEDVV--- 307 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ce--ec-cHHHHH---
Confidence 344444322 3688999999997 555555555578999999888764322221 12 22 22 333332
Q ss_pred ccccCCCcccEEEEchhhHhhChhcHHHHH-HHHHhccccCceEEEE
Q 047022 252 MTELFLGNFSTVFICGMIEAVGHDYMEELF-SCCESLLAENGLSCST 297 (381)
Q Consensus 252 l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l-~~~~~~LkpgG~~~i~ 297 (381)
...|+|++. .+. ..++ .+....+|||++++-+
T Consensus 308 ------~~ADIVI~a-----tGt---~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 308 ------ETADIFVTA-----TGN---KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred ------hcCCEEEEC-----CCc---ccccCHHHHhccCCCcEEEEc
Confidence 468999885 221 2234 4677889999996644
No 441
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=80.35 E-value=5.6 Score=32.68 Aligned_cols=88 Identities=7% Similarity=0.080 Sum_probs=45.8
Q ss_pred CCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 185 GQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 185 ~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
..+|+|+|-|.= ..+..+.+ .|..|+++|+.+. .+. ..+.+... |..+...+ --...|+|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~-~G~dV~~tDi~~~-------~a~-----~g~~~v~D-Dif~P~l~-----iY~~a~lI 74 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKE-RGFDVIATDINPR-------KAP-----EGVNFVVD-DIFNPNLE-----IYEGADLI 74 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHH-HS-EEEEE-SS-S----------------STTEE----SSS--HH-----HHTTEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHH-cCCcEEEEECccc-------ccc-----cCcceeee-cccCCCHH-----HhcCCcEE
Confidence 349999999974 45555555 5899999999987 111 24678887 88764311 11568999
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|.. |+.++...+-++.+.+ |.-++|..
T Consensus 75 YSiR-----PP~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 75 YSIR-----PPPELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp EEES-------TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred EEeC-----CChHHhHHHHHHHHHh--CCCEEEEC
Confidence 9973 3334455555555433 33355543
No 442
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=80.30 E-value=23 Score=33.38 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred cCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cC
Q 047022 180 VKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LF 256 (381)
Q Consensus 180 l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~ 256 (381)
..+.++.+||=.|+ +.|..+..+++..|++++.++-+++..+.+++ .|.. ..+... +..... +.+.. ..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~-~~~~~~-~~~~~~~~ 207 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAI--ILIRYP-DEEGFA-PKVKKLTG 207 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EEEecC-ChhHHH-HHHHHHhC
Confidence 45678899999884 46888888888889888888888887777743 2331 111111 110000 00000 12
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+++.. ++ ...+..+.+.|+++|.++.
T Consensus 208 ~~~~d~~i~~-----~~----~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 208 EKGVNLVLDC-----VG----GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred CCCceEEEEC-----Cc----hHHHHHHHHHhccCCeEEE
Confidence 3568999875 22 2355677888999999654
No 443
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.26 E-value=11 Score=39.19 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=57.1
Q ss_pred CEEEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEE
Q 047022 186 QEVLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVF 264 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Iv 264 (381)
.+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ......+ |..+.. -+.+-.-++.|.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~G-D~~~~~--~L~~a~i~~a~~vi 486 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLG-NAANEE--IMQLAHLDCARWLL 486 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEc-CCCCHH--HHHhcCccccCEEE
Confidence 5788888875 4433333333578999999999987777642 3678888 887642 11112236789776
Q ss_pred EchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 265 ICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 265 s~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
+. .++++-...+-.+.+...|+..++...
T Consensus 487 v~-----~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 487 LT-----IPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred EE-----cCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 54 332222223333445566776655443
No 444
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.18 E-value=14 Score=35.13 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=55.0
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-CC----------CCCeEEEEecCccccCcCCc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-GL----------QDTSDYIFVITVNCLKPTNM 252 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-gl----------~~~i~~~~~~d~~~l~~~~l 252 (381)
.+|.=||+|. +.++..+++ .|.+|+++|.+++.++.+++..... +. ..++++ .. |..+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~-~~~~~~---- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR-KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EA-GLAAAV---- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eC-CHHHHh----
Confidence 4788899996 344455555 4889999999999888777643211 10 011221 12 322211
Q ss_pred cccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLS 294 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~ 294 (381)
...|+|+.. +++. ....++.++..+++++..+
T Consensus 78 -----~~aDlVi~a-----v~~~~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 78 -----SGADLVIEA-----VPEKLELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred -----ccCCEEEEe-----ccCcHHHHHHHHHHHHHhCCCCcEE
Confidence 457988876 4432 2466788888877766543
No 445
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=80.11 E-value=2.2 Score=44.01 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHh--cCCEEEEEcCCH
Q 047022 182 LVKGQEVLEIGCGWGTLAIEIVRQ--TGCKYTGITLSE 217 (381)
Q Consensus 182 ~~~~~~VLDiGcG~G~~~~~la~~--~~~~v~gvDis~ 217 (381)
+.++..|||+||.+|++..-+++. .+.-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 457889999999999999988887 466899999865
No 446
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=79.94 E-value=16 Score=34.38 Aligned_cols=102 Identities=21% Similarity=0.247 Sum_probs=62.3
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....+.++.+||=.|+ +.|..+..+++..|+++++++.++...+.+++.. +.. .+... +-.+.. ..+...
T Consensus 139 ~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~-~~~~~~-~~v~~~ 210 (329)
T cd05288 139 EIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINY-KTPDLA-EALKEA 210 (329)
T ss_pred hccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEec-CChhHH-HHHHHh
Confidence 3345678899998884 3588888888888999999998888777665532 321 11111 100000 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.+|+++.. ++ ...++...+.|+++|.++.
T Consensus 211 ~~~~~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 211 APDGIDVYFDN-----VG----GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred ccCCceEEEEc-----ch----HHHHHHHHHhcCCCceEEE
Confidence 12568988875 32 2356777888999999653
No 447
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.86 E-value=21 Score=33.60 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=57.9
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------GL-Q--------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------gl-~--------~~i~~~~~~d~~~l 247 (381)
.+|.=||+|. | .++..++. .|.+|+.+|.+++.++.+.+++... +. + .++++. . |+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~~~~~ 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-T-DLEDL 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-C-CHHHh
Confidence 4788899996 3 44555555 4889999999999888765543221 21 0 122221 2 33221
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChh--cHHHHHHHHHhccccCceEEE
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHD--YMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i 296 (381)
...|+|+.. ++.. -...+++++...++|+..++.
T Consensus 82 ----------~~aD~Viea-----vpe~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 82 ----------ADCDLVIEA-----ATEDETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred ----------cCCCEEEEc-----CcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 457888876 4321 245778889999999877653
No 448
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.54 E-value=11 Score=30.32 Aligned_cols=87 Identities=9% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCEEEEecCCch-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWG-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+| +|+|+|-|-= ..+..+++ .|+.++++|+++. +.. ..+++... |..+...+ --...|+
T Consensus 14 ~g-kVvEVGiG~~~~VA~~L~e-~g~dv~atDI~~~-------~a~-----~g~~~v~D-DitnP~~~-----iY~~A~l 73 (129)
T COG1255 14 RG-KVVEVGIGFFLDVAKRLAE-RGFDVLATDINEK-------TAP-----EGLRFVVD-DITNPNIS-----IYEGADL 73 (129)
T ss_pred CC-cEEEEccchHHHHHHHHHH-cCCcEEEEecccc-------cCc-----ccceEEEc-cCCCccHH-----HhhCccc
Confidence 44 9999999863 45556666 5899999999876 111 24788888 88765411 1256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
|.|. =|+.++..++-.+.+.++-. ++|.
T Consensus 74 IYSi-----RpppEl~~~ildva~aVga~--l~I~ 101 (129)
T COG1255 74 IYSI-----RPPPELQSAILDVAKAVGAP--LYIK 101 (129)
T ss_pred eeec-----CCCHHHHHHHHHHHHhhCCC--EEEE
Confidence 9997 33334444444444443322 5554
No 449
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=79.22 E-value=16 Score=33.75 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHH---h---cCCEEEEEcCCH---------------------
Q 047022 167 VGQIRKVSVLIEKVK--LVKGQEVLEIGCGWGTLAIEIVR---Q---TGCKYTGITLSE--------------------- 217 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~---~---~~~~v~gvDis~--------------------- 217 (381)
......+..+++.+. --|| .|+|+||-.|+.++.++. . .+-++.+.|-=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpG-divE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~ 134 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPG-DIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEY 134 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-S-EEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGC
T ss_pred HHHHHHHHHHHHHHHhcCCCe-EEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhc
Confidence 344455566666653 1244 899999988876655432 1 234677766311
Q ss_pred -----HHHHHHHHHHHHcCC-CCCeEEEEecCccccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 218 -----LQLKYAEIKVKEAGL-QDTSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 218 -----~~~~~a~~~~~~~gl-~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
..++..++++...|+ .++++++.+ .+.+.-|. .+..++-++..-.-+. +-....|+.+...|.||
T Consensus 135 ~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG-~F~dTLp~----~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~G 205 (248)
T PF05711_consen 135 NGYLAVSLEEVRENFARYGLLDDNVRFVKG-WFPDTLPD----APIERIALLHLDCDLY----ESTKDALEFLYPRLSPG 205 (248)
T ss_dssp CHHCTHHHHHHHHCCCCTTTSSTTEEEEES--HHHHCCC-----TT--EEEEEE---SH----HHHHHHHHHHGGGEEEE
T ss_pred ccccccCHHHHHHHHHHcCCCcccEEEECC-cchhhhcc----CCCccEEEEEEeccch----HHHHHHHHHHHhhcCCC
Confidence 123334444444443 458999999 88654321 2223332222211111 12467889999999999
Q ss_pred ceEEEEc
Q 047022 292 GLSCSTV 298 (381)
Q Consensus 292 G~~~i~~ 298 (381)
|++++..
T Consensus 206 GiIi~DD 212 (248)
T PF05711_consen 206 GIIIFDD 212 (248)
T ss_dssp EEEEESS
T ss_pred eEEEEeC
Confidence 9998864
No 450
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.10 E-value=17 Score=34.13 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=57.1
Q ss_pred CEEEEecCCch--HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc--------CCC---------CCeEEEEecCccc
Q 047022 186 QEVLEIGCGWG--TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA--------GLQ---------DTSDYIFVITVNC 246 (381)
Q Consensus 186 ~~VLDiGcG~G--~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~--------gl~---------~~i~~~~~~d~~~ 246 (381)
.+|.=||+|.- .++..+++ .|.+|+.+|.+++.++.+++++... .+. .++++ .. |+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~-d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TT-DLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eC-CHHH
Confidence 47888999963 34444455 4889999999999888877653211 110 12222 12 3332
Q ss_pred cCcCCccccCCCcccEEEEchhhHhhCh--hcHHHHHHHHHhccccCceEEE
Q 047022 247 LKPTNMTELFLGNFSTVFICGMIEAVGH--DYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 247 l~~~~l~~~~~~~fD~Ivs~~~l~~~~~--~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.- ...|+|+.. ++. +-...+++++...++++-.+..
T Consensus 81 a~---------~~aDlViea-----vpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 AV---------KDADLVIEA-----VPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred Hh---------cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 21 456888876 332 1246778888888877765533
No 451
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.91 E-value=11 Score=35.64 Aligned_cols=101 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred HcCCCCCCEEEEecCC-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-cC
Q 047022 179 KVKLVKGQEVLEIGCG-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-LF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~~ 256 (381)
...++++.+|+=.|+| .|..+..+++..|++++.++.+++..+.+++. +.. ..+... +..+.. +.+.. ..
T Consensus 155 ~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~--~~~~~~-~~~~~~-~~~~~~~~ 226 (336)
T cd08276 155 LGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL----GAD--HVINYR-TTPDWG-EEVLKLTG 226 (336)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC--EEEcCC-cccCHH-HHHHHHcC
Confidence 3456788888877775 46666777777899999999998877776652 321 111111 100000 00000 12
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+|+++.. ++ ...+..+.+.|+++|.++.
T Consensus 227 ~~~~d~~i~~-----~~----~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 227 GRGVDHVVEV-----GG----PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred CCCCcEEEEC-----CC----hHHHHHHHHhhcCCCEEEE
Confidence 2569999875 22 2346667899999999664
No 452
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.79 E-value=24 Score=33.23 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=60.3
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH-------cCCC---------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE-------AGLQ---------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~-------~gl~---------~~i~~~~~~d~~~l 247 (381)
.+|--||+|+ +.++..++. .|.+|+..|.+++.++.+.+++.. .|.- .++++ .. |+..+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~-~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TT-DLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eC-CHHHh
Confidence 3788899996 455556666 499999999999999887766432 1210 12221 12 33222
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhcc-ccCceEEEEc
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLL-AENGLSCSTV 298 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~L-kpgG~~~i~~ 298 (381)
...|+|+-. +.+.. +-...+|..+.+.+ +|+..+..++
T Consensus 83 ----------~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 83 ----------ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ----------CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 456888876 23322 22457788888888 7776665443
No 453
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=78.62 E-value=30 Score=32.17 Aligned_cols=42 Identities=33% Similarity=0.519 Sum_probs=32.1
Q ss_pred CCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHH
Q 047022 181 KLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYA 223 (381)
Q Consensus 181 ~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a 223 (381)
.+.++.+||-.|| +.|..+..+++..|+++++++.+ ...+.+
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~ 183 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELV 183 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHH
Confidence 3678999999997 35788888888889999988854 544444
No 454
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=78.53 E-value=13 Score=34.97 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=59.2
Q ss_pred HcCCCCCC-EEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc-ccCcCCccc
Q 047022 179 KVKLVKGQ-EVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN-CLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~-~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~-~l~~~~l~~ 254 (381)
...+.++. +||=.|+ | .|..+..+|+..|++++.++-+++..+.+++ .|.. .+ +... +.. .+. .
T Consensus 139 ~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~-~~~~-~~~~~~~-----~ 206 (323)
T TIGR02823 139 RNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKE----LGAS-EV-IDRE-DLSPPGK-----P 206 (323)
T ss_pred hcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh----cCCc-EE-Eccc-cHHHHHH-----H
Confidence 33467888 9999997 4 4788888888889998888877776655532 2331 11 1111 111 010 0
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
...+.+|+|+.. ++. ..+..+.+.|+++|+++.
T Consensus 207 ~~~~~~d~vld~-----~g~----~~~~~~~~~l~~~G~~v~ 239 (323)
T TIGR02823 207 LEKERWAGAVDT-----VGG----HTLANVLAQLKYGGAVAA 239 (323)
T ss_pred hcCCCceEEEEC-----ccH----HHHHHHHHHhCCCCEEEE
Confidence 112358988775 321 235677888999999654
No 455
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=78.51 E-value=26 Score=33.45 Aligned_cols=38 Identities=32% Similarity=0.394 Sum_probs=26.1
Q ss_pred CCCCEEEEecCCc-hHHHHHHHHhcC-CEEEEEcCCHHHH
Q 047022 183 VKGQEVLEIGCGW-GTLAIEIVRQTG-CKYTGITLSELQL 220 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G~~~~~la~~~~-~~v~gvDis~~~~ 220 (381)
.++.+|+-+|||. |......+...+ .+|+.++.+++..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4688999999975 544444333334 5799999987644
No 456
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=78.50 E-value=12 Score=34.00 Aligned_cols=104 Identities=17% Similarity=0.136 Sum_probs=61.1
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~ 254 (381)
.+...++++++|+=+|+ +.|..+..+++..|+++++++.++...+.+++... ... .+... .-.+.. +.+..
T Consensus 101 ~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~--~~~---~~~~~-~~~~~~-~~~~~ 173 (293)
T cd05195 101 VDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGG--PVD---HIFSS-RDLSFA-DGILR 173 (293)
T ss_pred HHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCC--Ccc---eEeec-CchhHH-HHHHH
Confidence 34456778999998864 35777788888889999999888877666654310 000 11111 000000 00000
Q ss_pred -cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 -LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 -~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+++.. ++. ..+..+.+.|+++|.++.
T Consensus 174 ~~~~~~~d~vi~~-----~~~----~~~~~~~~~l~~~g~~v~ 207 (293)
T cd05195 174 ATGGRGVDVVLNS-----LSG----ELLRASWRCLAPFGRFVE 207 (293)
T ss_pred HhCCCCceEEEeC-----CCc----hHHHHHHHhcccCceEEE
Confidence 022468988864 432 256677899999999664
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.46 E-value=8.3 Score=38.05 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=48.5
Q ss_pred CEEEEecCCc-hHHHHHH-HHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 186 QEVLEIGCGW-GTLAIEI-VRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 186 ~~VLDiGcG~-G~~~~~l-a~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
.+||=||||. |....+. +++...+|+..|-|++..+.+..... .+++..+. |+.+.+. +.+ .-..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~v-D~~d~~a--l~~-li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQV-DAADVDA--LVA-LIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEe-cccChHH--HHH-HHhcCCEE
Confidence 4799999975 5555444 44433799999999987777765532 26888888 8876531 101 12456999
Q ss_pred EEc
Q 047022 264 FIC 266 (381)
Q Consensus 264 vs~ 266 (381)
++.
T Consensus 73 In~ 75 (389)
T COG1748 73 INA 75 (389)
T ss_pred EEe
Confidence 987
No 458
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=78.34 E-value=4.2 Score=40.89 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=54.5
Q ss_pred CCCEEEEecCCchHHHHHHHHh-cCCEEE------EEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ-TGCKYT------GITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~-~~~~v~------gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.+++|+-||||.=+.+..+--+ .|..|+ ++|.+....+.|. ..|+. .. +..+.-
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~----~dGF~------v~-~~~Ea~-------- 95 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKAT----ENGFK------VG-TYEELI-------- 95 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHH----hcCCc------cC-CHHHHH--------
Confidence 5789999999973332222111 344444 4444444443333 33442 23 444433
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
...|+|++. +|+.....+.+++...||||..+.++.
T Consensus 96 -~~ADvVviL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 96 -PQADLVINL-----TPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred -HhCCEEEEc-----CChHHHHHHHHHHHhhCCCCCEEEecC
Confidence 568999997 555555666799999999999977764
No 459
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.21 E-value=9.2 Score=35.89 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA 230 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~ 230 (381)
..+.+++.. ...+++.|||-=+|+|..+..+.+ .+-..+|++++++.++.+.+++...
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh
Confidence 334455555 457899999999999998887766 6889999999999999999998753
No 460
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=77.79 E-value=24 Score=33.28 Aligned_cols=100 Identities=23% Similarity=0.371 Sum_probs=60.9
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
+...+.++++||=+|+ +.|..+..+++..|.++++++-+++..+.+++ .|.. . +... +-.... ..+...
T Consensus 133 ~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~--v~~~-~~~~~~-~~~~~~ 203 (329)
T cd08250 133 EVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD-R--PINY-KTEDLG-EVLKKE 203 (329)
T ss_pred HhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc-e--EEeC-CCccHH-HHHHHh
Confidence 3345678999999984 35888888888889999999888877666643 2321 1 1111 111110 000001
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..+.+|+|+.. ++ ...+..+.+.|+++|.++
T Consensus 204 ~~~~vd~v~~~-----~g----~~~~~~~~~~l~~~g~~v 234 (329)
T cd08250 204 YPKGVDVVYES-----VG----GEMFDTCVDNLALKGRLI 234 (329)
T ss_pred cCCCCeEEEEC-----Cc----HHHHHHHHHHhccCCeEE
Confidence 12468999875 32 234667788899999955
No 461
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.78 E-value=5.1 Score=36.18 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc
Q 047022 171 RKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC 246 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~ 246 (381)
+..+.++.+...-..+-|.+||.|.|+.+..+....-.+...+++++..+.-.+-..+.+ +.+..++.+ |+..
T Consensus 37 ~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~-D~LR 109 (326)
T KOG0821|consen 37 RLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHG-DVLR 109 (326)
T ss_pred HHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecc-ccce
Confidence 334567777776677899999999999999998763347888888877766555443322 346777777 7643
No 462
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=77.75 E-value=10 Score=35.80 Aligned_cols=101 Identities=20% Similarity=0.200 Sum_probs=60.8
Q ss_pred HcCCCCCCEEEEec-C-CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-c
Q 047022 179 KVKLVKGQEVLEIG-C-GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-L 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiG-c-G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~ 255 (381)
...+.++.+||=.| + +.|..+..+++..|+++++++.++...+.+++ .|.. .+... +-.+.. +.+.. .
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~~~ 205 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKK----AGAW---QVINY-REENIV-ERVKEIT 205 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEEcC-CCCcHH-HHHHHHc
Confidence 34567889998886 3 35888888888889999999998887776643 2431 11111 111110 00000 1
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
....+|+|+.. ++ ...+....+.|+++|+++..
T Consensus 206 ~~~~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 238 (327)
T PRK10754 206 GGKKVRVVYDS-----VG----KDTWEASLDCLQRRGLMVSF 238 (327)
T ss_pred CCCCeEEEEEC-----Cc----HHHHHHHHHHhccCCEEEEE
Confidence 22468988864 32 12455677889999996643
No 463
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=77.71 E-value=6.9 Score=29.83 Aligned_cols=83 Identities=16% Similarity=0.049 Sum_probs=49.3
Q ss_pred EEEecCCch--HHHHHHHHhcC---CEEE-EEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCccc
Q 047022 188 VLEIGCGWG--TLAIEIVRQTG---CKYT-GITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFS 261 (381)
Q Consensus 188 VLDiGcG~G--~~~~~la~~~~---~~v~-gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD 261 (381)
|-=||||.- .++..+.+ .+ .++. +.+.+++..+...+.. .+.+... +..+.- +..|
T Consensus 2 I~iIG~G~mg~al~~~l~~-~g~~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~~-~~~~~~---------~~ad 63 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLA-SGIKPHEVIIVSSRSPEKAAELAKEY-------GVQATAD-DNEEAA---------QEAD 63 (96)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTS-GGEEEEEEESSHHHHHHHHHHC-------TTEEESE-EHHHHH---------HHTS
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCceeEEeeccCcHHHHHHHHHhh-------ccccccC-ChHHhh---------ccCC
Confidence 445677652 22233333 46 6888 5599998777665543 2444443 444433 4579
Q ss_pred EEEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 262 TVFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 262 ~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
+|+.. +++.....+++++ ..+.++..+
T Consensus 64 vvila-----v~p~~~~~v~~~i-~~~~~~~~v 90 (96)
T PF03807_consen 64 VVILA-----VKPQQLPEVLSEI-PHLLKGKLV 90 (96)
T ss_dssp EEEE------S-GGGHHHHHHHH-HHHHTTSEE
T ss_pred EEEEE-----ECHHHHHHHHHHH-hhccCCCEE
Confidence 99987 7777788888888 656666543
No 464
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=77.62 E-value=7.1 Score=32.98 Aligned_cols=120 Identities=16% Similarity=0.068 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 167 VGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQ-TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 167 ~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
.+|+.-++..++.....+| -|||+|=|.|..--++.+. ++.+|.++|-.-.... ...++.-.++++ |++
T Consensus 12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~ilG-di~ 81 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLILG-DIR 81 (160)
T ss_dssp HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEEES--HH
T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHheeec-cHH
Confidence 4788888999998876665 7999999999998888877 7889999995322111 112233456777 765
Q ss_pred ccCcCCccccCCCcccEEEEchhhHhhChhc---HHHHHHHHHhccccCceEEEEcC
Q 047022 246 CLKPTNMTELFLGNFSTVFICGMIEAVGHDY---MEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 246 ~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~---~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
+.-+. ++ ....+.-++-+-... +...++ ...+-.-+..+|.|||+++-..|
T Consensus 82 ~tl~~-~~-~~g~~a~laHaD~G~-g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 82 ETLPA-LA-RFGAGAALAHADIGT-GDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp HHHHH-HH-HH-S-EEEEEE-----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred HHhHH-HH-hcCCceEEEEeecCC-CCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 54211 00 111222222222111 111111 11122346789999999776544
No 465
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=77.45 E-value=32 Score=31.61 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCC
Q 047022 181 KLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLG 258 (381)
Q Consensus 181 ~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~ 258 (381)
.+.++.+||=.|+ | .|..+..+++..|.++++++.++ ..+.+++ .+.. .+... .-.+... .....
T Consensus 141 ~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~~---~~~~~-~~~~~~~----~~~~~ 207 (309)
T cd05289 141 GLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGAD---EVIDY-TKGDFER----AAAPG 207 (309)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCCC---EEEeC-CCCchhh----ccCCC
Confidence 3678899999986 3 47777777877899998888766 5554432 2321 11111 1111100 01235
Q ss_pred cccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 259 NFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 259 ~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.+|+++.. .+. .....+.+.|+++|.++..
T Consensus 208 ~~d~v~~~-----~~~----~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 208 GVDAVLDT-----VGG----ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred CceEEEEC-----Cch----HHHHHHHHHHhcCcEEEEE
Confidence 68988875 321 1556677889999996643
No 466
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=77.37 E-value=9.4 Score=36.39 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCCEEEEecCCchHHHHHHHHhc---------------------CCEEEEEcCCH--HHHHHHHHHHHHc----------
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQT---------------------GCKYTGITLSE--LQLKYAEIKVKEA---------- 230 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~~---------------------~~~v~gvDis~--~~~~~a~~~~~~~---------- 230 (381)
+..+||.||.|-|.=...++... ...++.||+.+ ..+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34699999999975444433221 13799999975 3444444443322
Q ss_pred --CC--C--CCeEEEEecCccccCcCCcccc-CCCcccEEEEchhhHhhC---hhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 231 --GL--Q--DTSDYIFVITVNCLKPTNMTEL-FLGNFSTVFICGMIEAVG---HDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 231 --gl--~--~~i~~~~~~d~~~l~~~~l~~~-~~~~fD~Ivs~~~l~~~~---~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
.. + -+++|.+. |+..+..+++... .....|+|...+.+.-+- .....+++.++...++||-.++|....
T Consensus 166 ~~~~~~~~~~~~~F~~~-DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQ-DVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred ccccCCccceeeeEEec-ccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 00 1 14688888 8887764332211 122567777655543221 124568999999999999997776655
Q ss_pred CCCCC
Q 047022 301 QCYDE 305 (381)
Q Consensus 301 ~~~~~ 305 (381)
..|..
T Consensus 245 GSYS~ 249 (315)
T PF11312_consen 245 GSYSE 249 (315)
T ss_pred CCchh
Confidence 55543
No 467
>PRK08507 prephenate dehydrogenase; Validated
Probab=76.78 E-value=14 Score=34.38 Aligned_cols=82 Identities=29% Similarity=0.401 Sum_probs=50.2
Q ss_pred EEEEecCCc--hHHHHHHHHhcC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 187 EVLEIGCGW--GTLAIEIVRQTG--CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 187 ~VLDiGcG~--G~~~~~la~~~~--~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
+|.=||+|. |.++..+.+. | .+|+++|.+++..+.+.+ .|..+. .. +..+.. + .|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-g~~~~v~~~d~~~~~~~~~~~----~g~~~~----~~-~~~~~~---------~-aD~ 61 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-GLISKVYGYDHNELHLKKALE----LGLVDE----IV-SFEELK---------K-CDV 61 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCCEEEEEcCCHHHHHHHHH----CCCCcc----cC-CHHHHh---------c-CCE
Confidence 577789886 3455555553 4 479999999887665532 233211 11 222211 3 799
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLS 294 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~ 294 (381)
|+.. ++......+++++.. ++|+..+
T Consensus 62 Vila-----vp~~~~~~~~~~l~~-l~~~~iv 87 (275)
T PRK08507 62 IFLA-----IPVDAIIEILPKLLD-IKENTTI 87 (275)
T ss_pred EEEe-----CcHHHHHHHHHHHhc-cCCCCEE
Confidence 8887 565556777788877 7777643
No 468
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=76.57 E-value=13 Score=28.80 Aligned_cols=84 Identities=12% Similarity=0.188 Sum_probs=52.2
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEEc
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFIC 266 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~ 266 (381)
+|| +-||+|.-+..++++ .++.+.+.|++ +++... +..++.. ....+|+|+..
T Consensus 5 ~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi~--~~v~a~-~~~~~~~------~~~~~Dvill~ 57 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGVP--VKIAAG-SYGAAGE------KLDDADVVLLA 57 (95)
T ss_pred EEE-EECCCchhHHHHHHH-----------------HHHHHHHCCCc--EEEEEe-cHHHHHh------hcCCCCEEEEC
Confidence 555 668888655555443 34444555764 777777 7666541 22568999987
Q ss_pred hhhHhhChhcHHHHHHHHHhccccCceEEEEcCCCCCCC
Q 047022 267 GMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQCYDE 305 (381)
Q Consensus 267 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~~~~~ 305 (381)
.+....++++.+.+.+-|.-+..++...|..
T Consensus 58 --------pqi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~ 88 (95)
T TIGR00853 58 --------PQVAYMLPDLKKETDKKGIPVEVINGAQYGK 88 (95)
T ss_pred --------chHHHHHHHHHHHhhhcCCCEEEeChhhccc
Confidence 3445567777887777777555565555543
No 469
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=76.46 E-value=24 Score=33.42 Aligned_cols=101 Identities=18% Similarity=0.319 Sum_probs=62.4
Q ss_pred HHcCCCC-----CCEEEEecC--CchHHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCc
Q 047022 178 EKVKLVK-----GQEVLEIGC--GWGTLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKP 249 (381)
Q Consensus 178 ~~l~~~~-----~~~VLDiGc--G~G~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~ 249 (381)
+...+.+ +.+||=+|+ +-|..+..+++..| .++++++.+++..+.+++ .|.. .+... . ....
T Consensus 138 ~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~-~~~~- 207 (336)
T cd08252 138 DRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE----LGAD---HVINH-H-QDLA- 207 (336)
T ss_pred HhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh----cCCc---EEEeC-C-ccHH-
Confidence 3444555 889999985 35778888888888 999999999887777643 2321 11111 1 0110
Q ss_pred CCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 250 TNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 250 ~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
..+.....+.+|+++.. ++. ...++.+.+.|+++|.++.
T Consensus 208 ~~i~~~~~~~~d~vl~~-----~~~---~~~~~~~~~~l~~~g~~v~ 246 (336)
T cd08252 208 EQLEALGIEPVDYIFCL-----TDT---DQHWDAMAELIAPQGHICL 246 (336)
T ss_pred HHHHhhCCCCCCEEEEc-----cCc---HHHHHHHHHHhcCCCEEEE
Confidence 00000122468988875 321 3467778899999999664
No 470
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.09 E-value=31 Score=28.65 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCEEEEecCCc-h-HHHHHHHHhcC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 183 VKGQEVLEIGCGW-G-TLAIEIVRQTG-CKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 183 ~~~~~VLDiGcG~-G-~~~~~la~~~~-~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
..+.+|+-+|||. | .++..+++ .+ ..++.+|.+++..+...+...... +..... +..+.. ..
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~---------~~ 81 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAERFGELG----IAIAYL-DLEELL---------AE 81 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeec-chhhcc---------cc
Confidence 3467999999974 2 23333333 33 689999998876655444332211 112223 332222 56
Q ss_pred ccEEEEch
Q 047022 260 FSTVFICG 267 (381)
Q Consensus 260 fD~Ivs~~ 267 (381)
.|+|++.-
T Consensus 82 ~Dvvi~~~ 89 (155)
T cd01065 82 ADLIINTT 89 (155)
T ss_pred CCEEEeCc
Confidence 89999863
No 471
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.88 E-value=37 Score=32.26 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=30.3
Q ss_pred CEEEEecCCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHH
Q 047022 186 QEVLEIGCGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIK 226 (381)
Q Consensus 186 ~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~ 226 (381)
.+|.-||+|. | .++..+++ .|.+|+++|.+++.++.++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~~~~~~~~~~ 44 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADPAAAAAAPAY 44 (308)
T ss_pred cEEEEECccHHHHHHHHHHHH-CCCeeEEEeCCHHHHHHHHHH
Confidence 3688899985 3 45555666 488999999999888876654
No 472
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=75.84 E-value=16 Score=30.40 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=53.0
Q ss_pred EEEecCCc-hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC-------ccccCcCCccccCCCc
Q 047022 188 VLEIGCGW-GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT-------VNCLKPTNMTELFLGN 259 (381)
Q Consensus 188 VLDiGcG~-G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d-------~~~l~~~~l~~~~~~~ 259 (381)
|+=+|+|. |.+..+...+.+.+|+.++-++ .++..++. | +++... + ......+ ....+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~-~~~~~~~~~~~~~~~---~~~~~~ 67 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ----G----LTITGP-DGDETVQPPIVISAP---SADAGP 67 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH----C----EEEEET-TEEEEEEEEEEESSH---GHHHST
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe----e----EEEEec-ccceecccccccCcc---hhccCC
Confidence 46678885 4444333333689999999877 55543332 3 222222 1 0001100 012478
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
+|+|+.. +...+....++.+...+.|+..+++.
T Consensus 68 ~D~viv~-----vKa~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 68 YDLVIVA-----VKAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp ESEEEE------SSGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred CcEEEEE-----ecccchHHHHHHHhhccCCCcEEEEE
Confidence 9999886 43345688999999999999765544
No 473
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=75.35 E-value=9.4 Score=33.33 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCC-EEEEecCCchHHHHHHHHhc-CCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEecCccccCc-CCcc--ccC
Q 047022 184 KGQ-EVLEIGCGWGTLAIEIVRQT-GCKYTGITLSELQLKYAEIKVKEAGL--QDTSDYIFVITVNCLKP-TNMT--ELF 256 (381)
Q Consensus 184 ~~~-~VLDiGcG~G~~~~~la~~~-~~~v~gvDis~~~~~~a~~~~~~~gl--~~~i~~~~~~d~~~l~~-~~l~--~~~ 256 (381)
++. .|+.+|||-=+....+.... +.++.-+|. |++++.-++.+...+. +.+.+++.. |+.+... +.|. .+.
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~-Dl~~~~~~~~L~~~g~~ 154 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPA-DLRDDSWIDALPKAGFD 154 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES--TTSHHHHHHHHHCTT-
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEec-cccchhhHHHHHHhCCC
Confidence 444 89999999988888887753 667788887 4556655555554421 123567888 8875210 0000 123
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHH
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCC 284 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~ 284 (381)
.+.--++++-+++.+++++....+++.+
T Consensus 155 ~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 155 PDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4556678888889999877777777654
No 474
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=75.18 E-value=11 Score=35.00 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=60.4
Q ss_pred HHHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcc-
Q 047022 177 IEKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMT- 253 (381)
Q Consensus 177 ~~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~- 253 (381)
.+...+.++.+||=.|+ +.|..+..+++..|++++.++.+++..+.+++ .++. ..+... .. +.. ..+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~~~-~~-~~~-~~~~~ 202 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEA----LGAD--IAINYR-EE-DFV-EVVKA 202 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EEEecC-ch-hHH-HHHHH
Confidence 44556778899998885 45777777777789999999988887665532 2331 111111 10 000 0000
Q ss_pred ccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 254 ELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 254 ~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+.+|+++.. ++ ...+..+.+.++++|.++.
T Consensus 203 ~~~~~~~d~~i~~-----~~----~~~~~~~~~~l~~~g~~v~ 236 (325)
T TIGR02824 203 ETGGKGVDVILDI-----VG----GSYLNRNIKALALDGRIVQ 236 (325)
T ss_pred HcCCCCeEEEEEC-----Cc----hHHHHHHHHhhccCcEEEE
Confidence 0122468998875 22 1245566788899999664
No 475
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=75.14 E-value=33 Score=32.57 Aligned_cols=96 Identities=14% Similarity=0.022 Sum_probs=54.1
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-ecCccccCcCCccccCCCcccE
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIF-VITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~-~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+|+=+|||. |.++.++++ .|..|+.++-+++.++..++. .|+ .+.. + .....+.........+.||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~~~~~~i~~~---~Gl----~i~~~g-~~~~~~~~~~~~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDRQRLAAYQQA---GGL----TLVEQG-QASLYAIPAETADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEechHHHHHHhhc---CCe----EEeeCC-cceeeccCCCCcccccccCE
Confidence 4799999995 445666666 588999999887655544432 122 1110 1 10000000000012357999
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
|+.. +-..+....++.+...+.|+..++
T Consensus 74 viv~-----vK~~~~~~al~~l~~~l~~~t~vv 101 (305)
T PRK05708 74 LLLA-----CKAYDAEPAVASLAHRLAPGAELL 101 (305)
T ss_pred EEEE-----CCHHhHHHHHHHHHhhCCCCCEEE
Confidence 8875 211234677888888888887644
No 476
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.91 E-value=44 Score=31.42 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=56.3
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-------HcCCC---------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVK-------EAGLQ---------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~-------~~gl~---------~~i~~~~~~d~~~l 247 (381)
.+|-=||+|. ..++..++. .|.+|+++|.+++.++.+++++. ..+.- .++.+ .. +...+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TT-NLEEL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eC-CHHHh
Confidence 4688899986 344455555 48899999999998877665432 12210 01111 12 22211
Q ss_pred CcCCccccCCCcccEEEEchhhHhhC--hhcHHHHHHHHHhccccCceEE
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVG--HDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~--~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
...|+|+.. ++ .+....+++++...++|+..++
T Consensus 82 ----------~~aD~Viea-----v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 82 ----------RDADFIIEA-----IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ----------CCCCEEEEc-----CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 346888876 43 2234677888888888887654
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=74.85 E-value=46 Score=33.24 Aligned_cols=72 Identities=8% Similarity=0.000 Sum_probs=46.4
Q ss_pred CCCEEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+..+|+=+|||. ++..+++. .+..++.+|.+++.++.+++.. ..+.+..+ |..+.. .|....-..+
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~g-d~~~~~--~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHG-DGTDQE--LLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEEC-CCCCHH--HHHhcCCccC
Confidence 357899998865 33333333 5789999999999877666542 24677888 875432 1111233678
Q ss_pred cEEEEc
Q 047022 261 STVFIC 266 (381)
Q Consensus 261 D~Ivs~ 266 (381)
|.|++.
T Consensus 299 ~~vi~~ 304 (453)
T PRK09496 299 DAFIAL 304 (453)
T ss_pred CEEEEC
Confidence 988875
No 478
>PLN02256 arogenate dehydrogenase
Probab=74.76 E-value=24 Score=33.60 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=50.8
Q ss_pred HcCCCCCCEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccC
Q 047022 179 KVKLVKGQEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELF 256 (381)
Q Consensus 179 ~l~~~~~~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~ 256 (381)
.+.-..+.+|.=||+|. |.++..+.+ .|.+|+++|.++. .+.+. ..|. .. .. +..+..
T Consensus 30 ~~~~~~~~kI~IIG~G~mG~slA~~L~~-~G~~V~~~d~~~~-~~~a~----~~gv----~~-~~-~~~e~~-------- 89 (304)
T PLN02256 30 ELEKSRKLKIGIVGFGNFGQFLAKTFVK-QGHTVLATSRSDY-SDIAA----ELGV----SF-FR-DPDDFC-------- 89 (304)
T ss_pred hhccCCCCEEEEEeeCHHHHHHHHHHHh-CCCEEEEEECccH-HHHHH----HcCC----ee-eC-CHHHHh--------
Confidence 33334567899999985 334445544 4779999998863 22222 2232 21 22 333321
Q ss_pred CCcccEEEEchhhHhhChhcHHHHHHHH-HhccccCce
Q 047022 257 LGNFSTVFICGMIEAVGHDYMEELFSCC-ESLLAENGL 293 (381)
Q Consensus 257 ~~~fD~Ivs~~~l~~~~~~~~~~~l~~~-~~~LkpgG~ 293 (381)
....|+|+.. ++......+++++ ...++|+..
T Consensus 90 ~~~aDvVila-----vp~~~~~~vl~~l~~~~l~~~~i 122 (304)
T PLN02256 90 EEHPDVVLLC-----TSILSTEAVLRSLPLQRLKRSTL 122 (304)
T ss_pred hCCCCEEEEe-----cCHHHHHHHHHhhhhhccCCCCE
Confidence 1346888876 4444456666666 455667654
No 479
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.69 E-value=28 Score=34.32 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=60.3
Q ss_pred EEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDT-SDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~-i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+||-++=..|.+++.++.. +.. ...| |--.....++++..++++.. +++... ..+++ +.+|+|+.
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~~---------~~~d~vl~ 112 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KPY-SIGD-SYISELATRENLRLNGIDESSVKFLDS--TADYP---------QQPGVVLI 112 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CCC-eeeh-HHHHHHHHHHHHHHcCCCcccceeecc--ccccc---------CCCCEEEE
Confidence 8999999999999999864 332 1123 22223345667777777543 444433 12233 66999888
Q ss_pred chhhHhhChh--cHHHHHHHHHhccccCceEEEEc
Q 047022 266 CGMIEAVGHD--YMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 266 ~~~l~~~~~~--~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
. +|.. .....+..+.++|.||+.+++..
T Consensus 113 ~-----~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 113 K-----VPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred E-----eCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 6 4432 35667888899999999976543
No 480
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.49 E-value=17 Score=33.94 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=58.9
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccc-c
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTE-L 255 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~-~ 255 (381)
...+.++.+||-.|+ +.|..+..+++..|++++.++.++...+.+++ .+.. .+... +-.... ..+.. .
T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~-~~~~~~-~~~~~~~ 209 (328)
T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGAA---HVIVT-DEEDLV-AEVLRIT 209 (328)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCC---EEEec-CCccHH-HHHHHHh
Confidence 445668889998887 34677777777788999999998876666533 2321 11111 111110 00000 0
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
....+|+++.. ++. .....+.+.++++|.++.
T Consensus 210 ~~~~~d~vi~~-----~~~----~~~~~~~~~l~~~g~~v~ 241 (328)
T cd08268 210 GGKGVDVVFDP-----VGG----PQFAKLADALAPGGTLVV 241 (328)
T ss_pred CCCCceEEEEC-----Cch----HhHHHHHHhhccCCEEEE
Confidence 12468999875 221 234566788999999653
No 481
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=74.04 E-value=21 Score=33.61 Aligned_cols=95 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred HHcCCCCCCEEEEecC-C-chHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCcccc
Q 047022 178 EKVKLVKGQEVLEIGC-G-WGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTEL 255 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc-G-~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~ 255 (381)
....++++.+||=+|+ | .|..+..+++..|.++++++.+ +.+ +..|.. .+... .+. .+.+...
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~----~~~g~~---~~~~~---~~~-~~~l~~~ 220 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWL----KEFGAD---EVVDY---DEV-EEKVKEI 220 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHH----HHhCCC---eeecc---hHH-HHHHHHH
Confidence 3466789999999997 4 4888888888889998887621 222 222321 11111 110 0001011
Q ss_pred CCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 256 FLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 256 ~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
. +.+|+|+.. .+ ...+....+.|+++|.++..
T Consensus 221 ~-~~~d~vl~~-----~g----~~~~~~~~~~l~~~g~~v~~ 252 (325)
T cd08264 221 T-KMADVVINS-----LG----SSFWDLSLSVLGRGGRLVTF 252 (325)
T ss_pred h-CCCCEEEEC-----CC----HHHHHHHHHhhccCCEEEEE
Confidence 2 568998875 32 23567889999999996643
No 482
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.91 E-value=33 Score=34.30 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=55.2
Q ss_pred EEEEecCCchHHHHHHHHh---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQ---TGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTV 263 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~---~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~I 263 (381)
+|+=+||| .++..+++. .|..|+.+|.+++.++.+++. ..+.+..+ |..+.. .+....-..+|.|
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~g-d~~~~~--~l~~~~~~~a~~v 69 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVG-NGSSPD--VLREAGAEDADLL 69 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEe-CCCCHH--HHHHcCCCcCCEE
Confidence 57778875 455444443 578999999999877765542 13677788 876432 1111123578988
Q ss_pred EEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 264 FICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 264 vs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
++. .++......+....+.+.|.-.+++..
T Consensus 70 i~~-----~~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 70 IAV-----TDSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred EEe-----cCChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 886 332333444444555554554444433
No 483
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.83 E-value=31 Score=32.42 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=50.3
Q ss_pred EEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecC-------ccccCcCCccccCC
Q 047022 187 EVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVIT-------VNCLKPTNMTELFL 257 (381)
Q Consensus 187 ~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d-------~~~l~~~~l~~~~~ 257 (381)
+|+=||+|. |. ++..+++ .|..|+.++. ++.++..++ .++. +....+ + ..+.. ...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~-~g~~V~~~~r-~~~~~~~~~----~g~~--~~~~~~-~~~~~~~~~~~~~------~~~ 66 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE-AGRDVTFLVR-PKRAKALRE----RGLV--IRSDHG-DAVVPGPVITDPE------ELT 66 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCceEEEec-HHHHHHHHh----CCeE--EEeCCC-eEEecceeecCHH------Hcc
Confidence 688899986 33 4444555 4788999988 555554332 2321 111000 0 00110 012
Q ss_pred CcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 258 GNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 258 ~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
..+|+|+.. ++....+.+++.+...+.++..++
T Consensus 67 ~~~d~vila-----vk~~~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 67 GPFDLVILA-----VKAYQLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred CCCCEEEEE-----ecccCHHHHHHHHHhhcCCCCEEE
Confidence 578988776 444456788888888887775543
No 484
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=73.82 E-value=9 Score=36.55 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCCCCCE--EEEecCCchHHHHHHHH---hcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCcc
Q 047022 171 RKVSVLIEKVKLVKGQE--VLEIGCGWGTLAIEIVR---QTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVN 245 (381)
Q Consensus 171 ~~~~~l~~~l~~~~~~~--VLDiGcG~G~~~~~la~---~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~ 245 (381)
..++.++..-...++.. =+|||.|.- +++.+. ..+...+++|+.+-.+..|..++.++++.+.+.++.- ...
T Consensus 87 hwI~DLLss~q~~k~~i~~GiDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~-~~~ 163 (419)
T KOG2912|consen 87 HWIEDLLSSQQSDKSTIRRGIDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKV-EPQ 163 (419)
T ss_pred HHHHHHhhcccCCCcceeeeeeccCchh--hhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEe-cch
Confidence 33444444433223322 378877653 444332 2567889999999999999999999999888877665 331
Q ss_pred c-cCcCCccccCCCcccEEEEch
Q 047022 246 C-LKPTNMTELFLGNFSTVFICG 267 (381)
Q Consensus 246 ~-l~~~~l~~~~~~~fD~Ivs~~ 267 (381)
+ +-.+.+....+..||.+.|+-
T Consensus 164 ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 164 KTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred hhcchhhhccCccceeeEEecCC
Confidence 1 110101111235689888864
No 485
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=73.39 E-value=4 Score=38.71 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=48.6
Q ss_pred EEEEecCCchHHHHHHHHhcCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 187 EVLEIGCGWGTLAIEIVRQTGC-KYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 187 ~VLDiGcG~G~~~~~la~~~~~-~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
+++|+-||-|+++.-+.+. |. .+.++|+++...+.-+.+.. ....+ |+.++.... ++. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~-Di~~~~~~~---l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP--------EVICG-DITEIDPSD---LPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT--------EEEES-HGGGCHHHH---HHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc--------ccccc-ccccccccc---ccc-cceEEEe
Confidence 7999999999999988774 65 57999999998887777763 66777 888776332 222 5898887
Q ss_pred c
Q 047022 266 C 266 (381)
Q Consensus 266 ~ 266 (381)
.
T Consensus 68 g 68 (335)
T PF00145_consen 68 G 68 (335)
T ss_dssp E
T ss_pred c
Confidence 4
No 486
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=73.39 E-value=19 Score=38.78 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=64.4
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------GL-Q--------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------gl-~--------~~i~~~~~~d~~~l 247 (381)
.+|--||+|+ ++++..++. .|..|+.+|.+++.++.+.+++... +. . .+++.. . |+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~-~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-L-SYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-C-CHHHh
Confidence 4789999997 345555566 4999999999999998877665321 10 0 123222 1 22221
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...|+|+-. ++|.+ +-..++|+++.++++|+.++.-.+.
T Consensus 391 ----------~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasnTS 429 (714)
T TIGR02437 391 ----------DNVDIVVEA-VVENP--KVKAAVLAEVEQHVREDAILASNTS 429 (714)
T ss_pred ----------cCCCEEEEc-CcccH--HHHHHHHHHHHhhCCCCcEEEECCC
Confidence 457888765 44444 3357899999999999988765443
No 487
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.31 E-value=17 Score=33.86 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCc
Q 047022 165 LEVGQIRKVSVLIEKVKLVKGQEVLEIGCGWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITV 244 (381)
Q Consensus 165 l~~aq~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~ 244 (381)
|++|-...+..--..-.+.+|...+|+|+-.|+++-.+.++ +..|++||--+- |.... .. +.|+-... |.
T Consensus 192 LEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~m----a~sL~-dt---g~v~h~r~-DG 261 (358)
T COG2933 192 LEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPM----AQSLM-DT---GQVTHLRE-DG 261 (358)
T ss_pred HHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc-ceEEEEeccchh----hhhhh-cc---cceeeeec-cC
Confidence 55655444333223344679999999999999999999996 899999997553 22221 11 35777777 77
Q ss_pred cccCcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccC
Q 047022 245 NCLKPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAEN 291 (381)
Q Consensus 245 ~~l~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~Lkpg 291 (381)
....| .....|-.||.. + +.+..+-..+...|..|
T Consensus 262 fk~~P------~r~~idWmVCDm----V--EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 262 FKFRP------TRSNIDWMVCDM----V--EKPARVAALIAKWLVNG 296 (358)
T ss_pred ccccc------CCCCCceEEeeh----h--cCcHHHHHHHHHHHHcc
Confidence 66653 236788888752 2 34566666667776655
No 488
>PRK11524 putative methyltransferase; Provisional
Probab=73.30 E-value=3.8 Score=38.62 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=36.3
Q ss_pred CeEEEEecCccccCcCCccccCCCcccEEEEchhhH----------------hhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 235 TSDYIFVITVNCLKPTNMTELFLGNFSTVFICGMIE----------------AVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 235 ~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs~~~l~----------------~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
..+++.+ |..+... .+++++||+|++.--.. +. .....++.++.++|||||.+++..
T Consensus 8 ~~~i~~g-D~~~~l~----~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHG-DALTELK----KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFI--DWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEec-cHHHHHH----hcccCcccEEEECCCcccccccccccccccHHHHH--HHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3456777 7666320 13457888888842110 11 123578999999999999987754
No 489
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=73.10 E-value=17 Score=33.09 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEecCccc-cCcCCc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQ--DTSDYIFVITVNC-LKPTNM 252 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~--~~i~~~~~~d~~~-l~~~~l 252 (381)
+...+.++++|+=.|. +.|..+..+++..|+++++++.+++..+.+++ .|.. .-+..... +... +.
T Consensus 98 ~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~---- 168 (288)
T smart00829 98 DLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRE----LGIPDDHIFSSRDL-SFADEIL---- 168 (288)
T ss_pred HHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCChhheeeCCCc-cHHHHHH----
Confidence 4455678899998873 35777778888789999999999888777643 2331 00111111 1100 00
Q ss_pred cccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEE
Q 047022 253 TELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCST 297 (381)
Q Consensus 253 ~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~ 297 (381)
.......+|+++.. ++ ...+....+.|+++|.++..
T Consensus 169 ~~~~~~~~d~vi~~-----~~----~~~~~~~~~~l~~~g~~v~~ 204 (288)
T smart00829 169 RATGGRGVDVVLNS-----LA----GEFLDASLRCLAPGGRFVEI 204 (288)
T ss_pred HHhCCCCcEEEEeC-----CC----HHHHHHHHHhccCCcEEEEE
Confidence 00122458888864 32 12345567889999986643
No 490
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.63 E-value=38 Score=33.83 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=26.9
Q ss_pred CEEEEecCCch--HHHHHHHHhcCCEEEEEcCCHHHHHH
Q 047022 186 QEVLEIGCGWG--TLAIEIVRQTGCKYTGITLSELQLKY 222 (381)
Q Consensus 186 ~~VLDiGcG~G--~~~~~la~~~~~~v~gvDis~~~~~~ 222 (381)
.+|-=||.|.. .++..+++ .|.+|+++|.+++.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHHHHHH
Confidence 46888899974 34444555 48999999999987765
No 491
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.63 E-value=15 Score=34.73 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=55.5
Q ss_pred CCCEEEEecCCch---HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCC-cc---ccC
Q 047022 184 KGQEVLEIGCGWG---TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTN-MT---ELF 256 (381)
Q Consensus 184 ~~~~VLDiGcG~G---~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~-l~---~~~ 256 (381)
.|..||==|.|.| .++.++|++ |++++..|++++-.+...+.++..| ++....+ |..+...-. +. ...
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~c-dis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTC-DISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEe-cCCCHHHHHHHHHHHHHh
Confidence 5778999998887 466677775 8899999999888777777776654 6888888 876532000 00 012
Q ss_pred CCcccEEEEchh
Q 047022 257 LGNFSTVFICGM 268 (381)
Q Consensus 257 ~~~fD~Ivs~~~ 268 (381)
-+..|++|.+..
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 367888887664
No 492
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=72.62 E-value=18 Score=39.10 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------C-CC--------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------G-LQ--------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------g-l~--------~~i~~~~~~d~~~l 247 (381)
.+|--||+|+ ++++..++. .|..|+.+|.+++.++.+.+++... + +. .++++. . |+..+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~-~~~~~ 412 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-L-DYSGF 412 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C-CHHHh
Confidence 5799999997 344555555 4999999999999998877765421 1 10 123322 1 33222
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPD 300 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~ 300 (381)
...|+|+-. ++|.+ +-..++|+++.++++|+.++...+..
T Consensus 413 ----------~~aDlViEA-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 413 ----------KNADMVIEA-VFEDL--SLKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred ----------ccCCeehhh-ccccH--HHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 346776654 34444 33578999999999999887665443
No 493
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.62 E-value=25 Score=37.77 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred CEEEEecCCc--hHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHc-------CC-C--------CCeEEEEecCcccc
Q 047022 186 QEVLEIGCGW--GTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEA-------GL-Q--------DTSDYIFVITVNCL 247 (381)
Q Consensus 186 ~~VLDiGcG~--G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~-------gl-~--------~~i~~~~~~d~~~l 247 (381)
.+|.-||+|+ ..++..++...|..|+.+|.+++.++.+.+++... +. . .+|++. . |+..+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~-~~~~~ 387 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-T-DYRGF 387 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-C-ChHHh
Confidence 5799999998 34555555335999999999999988876655321 11 0 133332 1 33222
Q ss_pred CcCCccccCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcC
Q 047022 248 KPTNMTELFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVP 299 (381)
Q Consensus 248 ~~~~l~~~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~ 299 (381)
...|+|+-. +.|.+ +-..++|+++.+.++|+.++.-.+.
T Consensus 388 ----------~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 388 ----------KHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTS 426 (708)
T ss_pred ----------ccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCC
Confidence 457887765 34444 3357899999999999988765443
No 494
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=72.30 E-value=16 Score=30.06 Aligned_cols=92 Identities=20% Similarity=0.229 Sum_probs=48.0
Q ss_pred CCCEEEEecCCc-h-HHHHHHHHhcCCEEEEEcC-CHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcc
Q 047022 184 KGQEVLEIGCGW-G-TLAIEIVRQTGCKYTGITL-SELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNF 260 (381)
Q Consensus 184 ~~~~VLDiGcG~-G-~~~~~la~~~~~~v~gvDi-s~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~f 260 (381)
+..+|-=||+|. | .++..+.+ .|..|.++-- +++..+.+.+.+. ... .. +..+.. ...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~-ag~~v~~v~srs~~sa~~a~~~~~------~~~--~~-~~~~~~---------~~a 69 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALAR-AGHEVVGVYSRSPASAERAAAFIG------AGA--IL-DLEEIL---------RDA 69 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHH-TTSEEEEESSCHH-HHHHHHC--T------T--------TTGGG---------CC-
T ss_pred CccEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCCcccccccccccc------ccc--cc-cccccc---------ccC
Confidence 446899999995 4 45555554 5889988864 3333333333221 111 12 333332 568
Q ss_pred cEEEEchhhHhhChhcHHHHHHHHHhc--cccCceEEEEcC
Q 047022 261 STVFICGMIEAVGHDYMEELFSCCESL--LAENGLSCSTVP 299 (381)
Q Consensus 261 D~Ivs~~~l~~~~~~~~~~~l~~~~~~--LkpgG~~~i~~~ 299 (381)
|+++.. ++++....+.+++... ++||-.++-+..
T Consensus 70 Dlv~ia-----vpDdaI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 70 DLVFIA-----VPDDAIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp SEEEE------S-CCHHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred CEEEEE-----echHHHHHHHHHHHHhccCCCCcEEEECCC
Confidence 999987 8877777787788776 677755555443
No 495
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.66 E-value=35 Score=32.99 Aligned_cols=94 Identities=16% Similarity=0.020 Sum_probs=54.3
Q ss_pred CCCEEEEecCCc-hH-HHHHHHHhcCCEEEEEcCCHHHHHHHHHHHH-HcCCC------CCeEEEEecCccccCcCCccc
Q 047022 184 KGQEVLEIGCGW-GT-LAIEIVRQTGCKYTGITLSELQLKYAEIKVK-EAGLQ------DTSDYIFVITVNCLKPTNMTE 254 (381)
Q Consensus 184 ~~~~VLDiGcG~-G~-~~~~la~~~~~~v~gvDis~~~~~~a~~~~~-~~gl~------~~i~~~~~~d~~~l~~~~l~~ 254 (381)
...+|.=||+|. |. ++..+++ .+ .++....+++..+..++.-. ...++ .++.+ .. |..+.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~-~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~-d~~~a------- 74 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICAR-RG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TT-DFAEA------- 74 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-EC-CHHHH-------
Confidence 346899999995 44 3344454 35 57777788877666654311 00111 11111 11 22111
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSC 295 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~ 295 (381)
....|+|+.. ++......+++++...++++..++
T Consensus 75 --~~~aDlVila-----vps~~~~~vl~~i~~~l~~~~~vI 108 (341)
T PRK12439 75 --ANCADVVVMG-----VPSHGFRGVLTELAKELRPWVPVV 108 (341)
T ss_pred --HhcCCEEEEE-----eCHHHHHHHHHHHHhhcCCCCEEE
Confidence 1457888876 555567889999999998876543
No 496
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=71.39 E-value=18 Score=33.67 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=57.9
Q ss_pred HcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEe-cCc-cccCcCCccc
Q 047022 179 KVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFV-ITV-NCLKPTNMTE 254 (381)
Q Consensus 179 ~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~-~d~-~~l~~~~l~~ 254 (381)
...+.++++||=.|+ +.|..+..+++..|.+++.++.+++..+.+.+ .+.. . .+... .+. ..+. ..
T Consensus 139 ~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~-~~~~~~~~~~~~~~----~~ 208 (325)
T cd08253 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQ----AGAD-A-VFNYRAEDLADRIL----AA 208 (325)
T ss_pred HhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC-E-EEeCCCcCHHHHHH----HH
Confidence 356678899998886 34667777777788999999998877766643 2331 1 11111 011 0010 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+++... +. ..+....+.++++|.++.
T Consensus 209 ~~~~~~d~vi~~~-----~~----~~~~~~~~~l~~~g~~v~ 241 (325)
T cd08253 209 TAGQGVDVIIEVL-----AN----VNLAKDLDVLAPGGRIVV 241 (325)
T ss_pred cCCCceEEEEECC-----ch----HHHHHHHHhhCCCCEEEE
Confidence 1234699998752 21 123445678899998553
No 497
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=70.94 E-value=60 Score=29.07 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=51.1
Q ss_pred EEEEec-CCc-h-HHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHH----cCCCCCeEEEEecCccccCcCCccccCCCc
Q 047022 187 EVLEIG-CGW-G-TLAIEIVRQTGCKYTGITLSELQLKYAEIKVKE----AGLQDTSDYIFVITVNCLKPTNMTELFLGN 259 (381)
Q Consensus 187 ~VLDiG-cG~-G-~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~----~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~ 259 (381)
+|.=|| +|. | .++..+++ .|.+|+..+.+++..+...+.... .+.. ++.... +..+.. ..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~--~~~~~~-~~~ea~---------~~ 68 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDLEKAEEAAAKALEELGHGGSD--IKVTGA-DNAEAA---------KR 68 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCHHHHHHHHHHHHhhccccCCC--ceEEEe-ChHHHH---------hc
Confidence 577786 773 4 45555555 478888889888766554432211 1111 122222 222211 45
Q ss_pred ccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEEEc
Q 047022 260 FSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTV 298 (381)
Q Consensus 260 fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~ 298 (381)
.|+|+.. ++.......++.+...++ +.++++.
T Consensus 69 aDvVila-----vp~~~~~~~l~~l~~~l~--~~vvI~~ 100 (219)
T TIGR01915 69 ADVVILA-----VPWDHVLKTLESLRDELS--GKLVISP 100 (219)
T ss_pred CCEEEEE-----CCHHHHHHHHHHHHHhcc--CCEEEEe
Confidence 7998887 544445667777766554 3556654
No 498
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.88 E-value=7.9 Score=37.11 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=44.1
Q ss_pred EEEecCCchHHHHHHHHhcCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccEEEE
Q 047022 188 VLEIGCGWGTLAIEIVRQTGCKY-TGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFSTVFI 265 (381)
Q Consensus 188 VLDiGcG~G~~~~~la~~~~~~v-~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~Ivs 265 (381)
|+|+-||.|+++.-+-+ .|.++ .++|+++...+.-+.+... .+..+ |+.++.+.. ...+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~-Di~~~~~~~-----~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN-------KVPFG-DITKISPSD-----IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC-------CCCcc-Chhhhhhhh-----CCCcCEEEe
Confidence 68999999999988876 47765 5799999887777666421 33456 776665221 134677764
No 499
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=70.82 E-value=14 Score=34.12 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHcCCCCCCEEEEecC--CchHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccc-cCcCCccc
Q 047022 178 EKVKLVKGQEVLEIGC--GWGTLAIEIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNC-LKPTNMTE 254 (381)
Q Consensus 178 ~~l~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~-l~~~~l~~ 254 (381)
....++++.+||=.|. +.|..+..+++..|+++++++.++...+.+++ .|...-+..... +... +. ..
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~-~~~~~i~----~~ 184 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQ----LGVPHVINYVEE-DFEEEIM----RL 184 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCCCEEEeCCCc-cHHHHHH----HH
Confidence 4566778889887653 35777778888889999999998887776643 243211111111 1100 00 00
Q ss_pred cCCCcccEEEEchhhHhhChhcHHHHHHHHHhccccCceEEE
Q 047022 255 LFLGNFSTVFICGMIEAVGHDYMEELFSCCESLLAENGLSCS 296 (381)
Q Consensus 255 ~~~~~fD~Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i 296 (381)
.....+|+++.. ++ ...+....+.|+++|.++.
T Consensus 185 ~~~~~~d~v~~~-----~~----~~~~~~~~~~l~~~g~~v~ 217 (303)
T cd08251 185 TGGRGVDVVINT-----LS----GEAIQKGLNCLAPGGRYVE 217 (303)
T ss_pred cCCCCceEEEEC-----Cc----HHHHHHHHHHhccCcEEEE
Confidence 123568988875 32 2345566788999999654
No 500
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=70.41 E-value=49 Score=25.77 Aligned_cols=88 Identities=23% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCEEEEecCCchHHHH-HHHHhcCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEecCccccCcCCccccCCCcccE
Q 047022 184 KGQEVLEIGCGWGTLAI-EIVRQTGCKYTGITLSELQLKYAEIKVKEAGLQDTSDYIFVITVNCLKPTNMTELFLGNFST 262 (381)
Q Consensus 184 ~~~~VLDiGcG~G~~~~-~la~~~~~~v~gvDis~~~~~~a~~~~~~~gl~~~i~~~~~~d~~~l~~~~l~~~~~~~fD~ 262 (381)
.+.+||=||.|.-.... ......|++|+.+.... +..+ +.+++... .++.. -..+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~---------~~i~~~~~-~~~~~---------l~~~~l 63 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE---------GLIQLIRR-EFEED---------LDGADL 63 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH---------TSCEEEES-S-GGG---------CTTESE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh---------hHHHHHhh-hHHHH---------HhhheE
Confidence 46799999997633322 22222688999988875 1111 35777777 66422 256899
Q ss_pred EEEchhhHhhChhcHHHHHHHHHhccccCceEEEEcCCC
Q 047022 263 VFICGMIEAVGHDYMEELFSCCESLLAENGLSCSTVPDQ 301 (381)
Q Consensus 263 Ivs~~~l~~~~~~~~~~~l~~~~~~LkpgG~~~i~~~~~ 301 (381)
|++. .+ -+..-+.+.+..+.-|.++-....+
T Consensus 64 V~~a-----t~---d~~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 64 VFAA-----TD---DPELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp EEE------SS----HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred EEec-----CC---CHHHHHHHHHHHhhCCEEEEECCCc
Confidence 9986 32 2444556666667777766555433
Done!