BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047023
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LFJ5|T112A_ARATH TRM112-like protein At1g22270 OS=Arabidopsis thaliana
GN=At1g22270 PE=2 SV=1
Length = 124
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 73/83 (87%), Gaps = 1/83 (1%)
Query: 1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
MRL+THNMLS NIKGV +GFPL IE VIEK+VDFNPDF++++F KIEW+ALV+ +RSM
Sbjct: 1 MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60
Query: 61 GYAELPEESPESSMLDSDD-FLR 82
GYAELPEESP++++L SD+ FL+
Sbjct: 61 GYAELPEESPDAAVLKSDEPFLK 83
>sp|Q9C9R3|T112B_ARATH TRM112-like protein At1g78190 OS=Arabidopsis thaliana
GN=At1g78190 PE=2 SV=1
Length = 124
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60
MRL+ HNMLS NIKGV N FPL IE EKV K+VDFNPDFL+ +F KI+W+ALV +RSM
Sbjct: 1 MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60
Query: 61 GYAELPEESPESSMLDSDD-FLR 82
Y ELP+ +P+++ L+SD+ FLR
Sbjct: 61 EYTELPDNAPDTTTLESDETFLR 83
>sp|Q9DCG9|TR112_MOUSE tRNA methyltransferase 112 homolog OS=Mus musculus GN=Trmt112
PE=2 SV=1
Length = 125
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+LLTHN+LSS+++GV GFPL ++ +V V+FNP+F+ + PK+EW ALVQA+ +
Sbjct: 1 MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60
Query: 60 MGYAELPEESPESSMLDSDDFLR 82
+ AE+P+E E D + FLR
Sbjct: 61 LNLAEVPKEPTEGYEHD-ETFLR 82
>sp|Q2KIA2|TR112_BOVIN tRNA methyltransferase 112 homolog OS=Bos taurus GN=TRMT112 PE=2
SV=1
Length = 125
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 1 MRLLTHNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
MRLLTHN+LSS+++GV GFPL ++ +V V+FNPDF+ + PK+EW AL++A+
Sbjct: 1 MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADH 60
Query: 60 MGYAELPEESPESSMLDSDDFLR 82
+ ++P+E P +++FLR
Sbjct: 61 LHLIQVPKE-PIQGYEHNEEFLR 82
>sp|Q9UI30|TR112_HUMAN tRNA methyltransferase 112 homolog OS=Homo sapiens GN=TRMT112
PE=1 SV=1
Length = 125
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 1 MRLLTHNMLSSNIKGVAN-GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+LLTHN+LSS+++GV + GFPL ++ +V V+FNP+F+ + PK+EW A ++A+ +
Sbjct: 1 MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60
Query: 60 MGYAELPEESPESSMLDSDDFLR 82
+ ++P + P ++++FLR
Sbjct: 61 LRLIQVP-KGPVEGYEENEEFLR 82
>sp|Q09723|TR112_SCHPO Multifunctional methyltransferase subunit trm112
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm112 PE=3 SV=1
Length = 126
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 1 MRLLTHNMLSSNIKGVAN---GFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
M+LLT N L+ + K + FPL + K+ +Q++ P+FL I P+I+W AL++ +
Sbjct: 1 MKLLTANFLNCSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTT 60
Query: 58 RSMGYAELPEESPESSMLDSDDFL 81
R +G LP+E P+ + DSD+ L
Sbjct: 61 RQLGNYSLPDEKPD-LVDDSDEVL 83
>sp|Q8X0S4|TR112_NEUCR Protein trm-112 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=trm-112 PE=3 SV=1
Length = 127
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 1 MRLLTHNMLSS---NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
M+++T N L+ N K + FPL + ++ + ++ NP L N+ P+I+W AL S
Sbjct: 1 MKVMTLNFLTCAVKNCKSSNDSFPLHPKEAELAKDDIEINPQLLINVLPRIDWAALRTTS 60
Query: 58 RSMGYAELPEESPESSMLDSDDFL 81
+G+ LPE+ P L SD+ L
Sbjct: 61 TELGFPTLPEQPPSPEDLQSDEAL 84
>sp|Q9VP65|TR112_DROME TRM112-like protein OS=Drosophila melanogaster GN=CG12975 PE=2
SV=1
Length = 124
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 1 MRLLTHNMLSS-NIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+L T+N L+S IKGV GFPL + + K + +FNP F++ I PK++W A+ A++
Sbjct: 1 MKLSTYNFLTSVAIKGVKVGFPLKLTINKKEVVESEFNPTFVERILPKLDWSAVYGAAQ- 59
Query: 60 MGYAELPEESP 70
AEL E+ P
Sbjct: 60 --VAELTEDIP 68
>sp|Q54N57|TR112_DICDI TRM112-like protein OS=Dictyostelium discoideum GN=DDB_G0285489
PE=3 SV=1
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MRLLTHNMLSSNIK-GVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQAS 57
M++LTHNM++ K + GFPL +E + I + +FN +F KNI+PK++W + + S
Sbjct: 1 MKILTHNMMACTKKQCMGKGFPLKVESTEQIVLEQEFNYEFTKNIYPKLDWLGIAEIS 58
>sp|O45241|TR112_CAEEL TRM112-like protein OS=Caenorhabditis elegans GN=C04H5.1 PE=3
SV=1
Length = 125
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 1 MRLLTHNMLSSN-IKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRS 59
M+L HN +SS +K V G+PL + V++ +EK ++F+ D + +I+++AL+ A+ +
Sbjct: 1 MKLFVHNFMSSRFLKNVTVGYPLNLVVKQFVEKDIEFDRDNTIVMLDRIQYEALIVAAAA 60
Query: 60 MGYAE-LPEESPESSMLDSDDFLR 82
+ ++ +P E PE +D+ LR
Sbjct: 61 VNQSDRIPREKPEKWDELTDEQLR 84
>sp|P53738|TR112_YEAST Multifunctional methyltransferase subunit TRM112 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRM112 PE=1
SV=1
Length = 135
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 1 MRLLTHNMLSSNIKGV---ANGFPLLIEVEK---VIEKQVDFNPDFLKNIFPKIEWQALV 54
M+ LT N L ++K + FPL + K V ++ ++FNP+FL NI +++W A++
Sbjct: 1 MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVL 60
Query: 55 QASRSMGYAELPEESP 70
+ +G LP P
Sbjct: 61 TVAAELGNNALPPTKP 76
>sp|B4S277|SYGB_ALTMD Glycine--tRNA ligase beta subunit OS=Alteromonas macleodii (strain
DSM 17117 / Deep ecotype) GN=glyS PE=3 SV=1
Length = 692
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 35 DFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSMLDSDDFL 81
D++ + L+ I +EW ++QA G+ E+P+E+ +M D ++
Sbjct: 241 DYDEELLEEIASLVEWPVVLQAGFDKGFLEVPKEALIYTMKDDQKYV 287
>sp|C5C430|FGD_BEUC1 F420-dependent glucose-6-phosphate dehydrogenase OS=Beutenbergia
cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)
GN=fgd PE=3 SV=1
Length = 336
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 11/88 (12%)
Query: 3 LLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSMGY 62
L T +L + +G A L +++ +IE +V ++PD + + W AL S
Sbjct: 198 LYTETLLPALAEGAAKSDRTLADLDLMIEMKVSYDPDHARALEATRNWGALALTSEEKVG 257
Query: 63 AE-----------LPEESPESSMLDSDD 79
E LP E S + SDD
Sbjct: 258 VEDPVEMERLADALPTERTASRWIVSDD 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,959,200
Number of Sequences: 539616
Number of extensions: 983972
Number of successful extensions: 3043
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3021
Number of HSP's gapped (non-prelim): 20
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)