Query 047023
Match_columns 82
No_of_seqs 108 out of 220
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:43:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j6a_A Protein TRM112; transla 100.0 2.7E-38 9.3E-43 216.7 6.3 81 1-82 1-94 (141)
2 3q87_A Putative uncharacterize 100.0 2.4E-36 8.1E-41 203.6 -2.8 79 1-82 1-84 (125)
3 3sm4_A Exonuclease; homologous 48.7 9.1 0.00031 26.6 2.1 37 27-63 185-223 (229)
4 1b0n_B Protein (SINI protein); 48.2 9.7 0.00033 21.7 1.8 16 48-63 13-28 (57)
5 3e7l_A Transcriptional regulat 30.3 8.3 0.00028 21.3 -0.5 28 35-63 18-45 (63)
6 3sr3_A Microcin immunity prote 24.7 33 0.0011 25.0 1.8 14 42-55 93-106 (336)
7 2rn7_A IS629 ORFA; helix, all 24.1 51 0.0017 19.2 2.3 28 35-62 6-42 (108)
8 4h1h_A LMO1638 protein; MCCF-l 24.1 35 0.0012 24.7 1.8 14 42-55 92-105 (327)
9 1cmk_I CAMP-dependent protein 23.6 27 0.00094 17.0 0.8 16 6-21 4-19 (26)
10 3tla_A MCCF; serine protease, 23.1 37 0.0013 25.3 1.8 14 42-55 123-136 (371)
11 1ugp_A NitrIle hydratase alpha 21.8 18 0.00061 25.6 -0.2 13 5-17 101-113 (203)
12 4e5s_A MCCFLIKE protein (BA_56 21.2 34 0.0012 24.9 1.3 14 42-55 92-105 (331)
13 1zl0_A Hypothetical protein PA 21.1 39 0.0013 24.6 1.6 14 42-55 94-107 (311)
14 1umq_A Photosynthetic apparatu 20.7 15 0.0005 21.9 -0.7 28 35-63 40-67 (81)
15 3k8u_A Putative ABC transporte 20.3 1E+02 0.0034 19.1 3.3 29 34-62 31-63 (156)
No 1
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=216.66 Aligned_cols=81 Identities=33% Similarity=0.690 Sum_probs=76.4
Q ss_pred Ccccchhhhhhcccccc---cCCCcee--eeeeEEEecc-CCCHHHHHhhcccccHHHHHHHHHhcCCCCCCCCCCCCCC
Q 047023 1 MRLLTHNMLSSNIKGVA---NGFPLLI--EVEKVIEKQV-DFNPDFLKNIFPKIEWQALVQASRSMGYAELPEESPESSM 74 (82)
Q Consensus 1 MrLlThN~L~c~~k~c~---~gfPL~i--~~~~~~~~e~-efN~eFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p~~~~ 74 (82)
|||||||||+|++|||+ +||||++ +++++++.|+ ||||+||++|||||||+||++||++||.++||+++| +++
T Consensus 1 MkLlThN~L~c~vk~c~~~~~gFPL~~~~~~~~~~~~e~~efnpeFi~~mlpkldW~aL~~aA~~lg~~~LP~~~p-e~~ 79 (141)
T 2j6a_A 1 MKFLTTNFLKCSVKACDTSNDNFPLQYDGSKCQLVQDESIEFNPEFLLNIVDRVDWPAVLTVAAELGNNALPPTKP-SFP 79 (141)
T ss_dssp CBGGGGGTCCCCCGGGTTCTTSSSCEECTTTCEEEECTTSCCCHHHHHHHHHHSCHHHHHHHHHHTTCCCSCSSCC-CCC
T ss_pred CceeehhhhhcccccCCcCCCCcceeeccccceeEEcccccCCHHHHHHHHhhcCHHHHHHHHHHhCCccCCCcCC-ccc
Confidence 99999999999999998 8999999 9999999999 999999999999999999999999999999999999 775
Q ss_pred -----CCCch--hhC
Q 047023 75 -----LDSDD--FLR 82 (82)
Q Consensus 75 -----~~dee--fL~ 82 (82)
++||+ |||
T Consensus 80 ~~~~~~~dee~~~Lk 94 (141)
T 2j6a_A 80 SSIQELTDDDMAILN 94 (141)
T ss_dssp SSGGGCCHHHHHHHH
T ss_pred ccccccCchHHHHHH
Confidence 56776 875
No 2
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.4e-36 Score=203.61 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=74.6
Q ss_pred CcccchhhhhhcccccccCCCceeeeeeEEEeccCCC--HHHHHhhcc---cccHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 047023 1 MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFN--PDFLKNIFP---KIEWQALVQASRSMGYAELPEESPESSML 75 (82)
Q Consensus 1 MrLlThN~L~c~~k~c~~gfPL~i~~~~~~~~e~efN--~eFi~~mlp---kldW~aL~~aA~~lg~~~LP~~~p~~~~~ 75 (82)
|||||||||+|++|||++| |+++++++++.|+||| |+||++||| ||||+||++||++||+++||+++| ++++
T Consensus 1 MkLlThN~L~c~vk~~~~g--L~~~~~~~~~~e~efn~~~eFl~~mlp~~~kldW~aL~~aA~~lg~~~LP~~~p-~~~~ 77 (125)
T 3q87_A 1 MKPFLLGLLKCKRCSFMTK--LILECEKAESNDVDTDDVKIFNKHMFTENGGERLKSLVNSLRDFHGRELSEQDI-SSFV 77 (125)
T ss_dssp CCGGGGGTBCCSSCSSCCC--EEEEEEEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHHTTTCCSSCCCHHHH-HHHH
T ss_pred CcccccchhhhcccccCCC--ceEEeeEEEEecccCCccHHHHHHHcCCccccCHHHHHHHHHHhCCccCCCCCC-Cccc
Confidence 9999999999999999988 9999999999999999 999999999 999999999999999988999999 8888
Q ss_pred CCchhhC
Q 047023 76 DSDDFLR 82 (82)
Q Consensus 76 ~deefL~ 82 (82)
+||+|||
T Consensus 78 ~deefLr 84 (125)
T 3q87_A 78 ENPGDDE 84 (125)
T ss_dssp HCTTCCH
T ss_pred CCHHHHH
Confidence 9999985
No 3
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=48.74 E-value=9.1 Score=26.59 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=32.0
Q ss_pred eeEEEeccCCCHHHHHhhccccc--HHHHHHHHHhcCCC
Q 047023 27 EKVIEKQVDFNPDFLKNIFPKIE--WQALVQASRSMGYA 63 (82)
Q Consensus 27 ~~~~~~e~efN~eFi~~mlpkld--W~aL~~aA~~lg~~ 63 (82)
.+..+..++.|++|+..|++++. |..+-++-+.+|+.
T Consensus 185 ~~~~i~rI~RD~~~i~~l~~~~~~Fw~~v~~~~~~~~~~ 223 (229)
T 3sm4_A 185 EGLHYVVIERDEKYMASFDEIVPEFIEKMDEALAEIGFV 223 (229)
T ss_dssp CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 35678889999999999999887 88888888889874
No 4
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=48.20 E-value=9.7 Score=21.70 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHhcCCC
Q 047023 48 IEWQALVQASRSMGYA 63 (82)
Q Consensus 48 ldW~aL~~aA~~lg~~ 63 (82)
++|-.|...|+++|++
T Consensus 13 ~ewl~LI~~Ak~lGls 28 (57)
T 1b0n_B 13 QEWVELMVEAKEANIS 28 (57)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5799999999999975
No 5
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=30.34 E-value=8.3 Score=21.26 Aligned_cols=28 Identities=14% Similarity=0.471 Sum_probs=22.8
Q ss_pred CCCHHHHHhhcccccHHHHHHHHHhcCCC
Q 047023 35 DFNPDFLKNIFPKIEWQALVQASRSMGYA 63 (82)
Q Consensus 35 efN~eFi~~mlpkldW~aL~~aA~~lg~~ 63 (82)
+|-.++|.+.|.+-+|+ ..+||+.||++
T Consensus 18 ~~E~~~i~~aL~~~~gn-~~~aA~~LGis 45 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYD-LKRTAEEIGID 45 (63)
T ss_dssp HHHHHHHHHHHHHTTTC-HHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHCcC
Confidence 45678899999998887 56899999964
No 6
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=24.75 E-value=33 Score=25.05 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=11.9
Q ss_pred HhhcccccHHHHHH
Q 047023 42 KNIFPKIEWQALVQ 55 (82)
Q Consensus 42 ~~mlpkldW~aL~~ 55 (82)
.++||.|||+++.+
T Consensus 93 ~rlL~~lD~~~i~~ 106 (336)
T 3sr3_A 93 NSLLPYIDYDAFQN 106 (336)
T ss_dssp GGGGGGSCHHHHHH
T ss_pred HHHhhhcChhHHhh
Confidence 58999999998764
No 7
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=24.11 E-value=51 Score=19.23 Aligned_cols=28 Identities=18% Similarity=0.560 Sum_probs=21.7
Q ss_pred CCCHHHHHhhcccc-c--------HHHHHHHHHhcCC
Q 047023 35 DFNPDFLKNIFPKI-E--------WQALVQASRSMGY 62 (82)
Q Consensus 35 efN~eFi~~mlpkl-d--------W~aL~~aA~~lg~ 62 (82)
-|.++|-..++..+ + |..+.++|+.+|+
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gI 42 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGC 42 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCc
Confidence 47888888887754 2 5788899999995
No 8
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=24.10 E-value=35 Score=24.71 Aligned_cols=14 Identities=7% Similarity=0.586 Sum_probs=12.0
Q ss_pred HhhcccccHHHHHH
Q 047023 42 KNIFPKIEWQALVQ 55 (82)
Q Consensus 42 ~~mlpkldW~aL~~ 55 (82)
.++||.|||+++.+
T Consensus 92 ~rlL~~LD~~~i~~ 105 (327)
T 4h1h_A 92 NQLLPYLDYDLISE 105 (327)
T ss_dssp GGGGGGCCHHHHHH
T ss_pred HHHhhhcchhhhcc
Confidence 58999999998865
No 9
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=23.55 E-value=27 Score=17.04 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=12.7
Q ss_pred hhhhhhcccccccCCC
Q 047023 6 HNMLSSNIKGVANGFP 21 (82)
Q Consensus 6 hN~L~c~~k~c~~gfP 21 (82)
-+|++|...||.|.-|
T Consensus 4 ~~F~~~~RtGRRNAlp 19 (26)
T 1cmk_I 4 ADFIASGRTGRRNAIH 19 (26)
T ss_pred HHHhhcCccccccccc
Confidence 3789999999986654
No 10
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.10 E-value=37 Score=25.35 Aligned_cols=14 Identities=14% Similarity=0.700 Sum_probs=11.9
Q ss_pred HhhcccccHHHHHH
Q 047023 42 KNIFPKIEWQALVQ 55 (82)
Q Consensus 42 ~~mlpkldW~aL~~ 55 (82)
.++||.|||+++.+
T Consensus 123 ~rlLp~LD~~~i~~ 136 (371)
T 3tla_A 123 NSLLPFLDYDAIIA 136 (371)
T ss_dssp GGGGGGSCHHHHHH
T ss_pred HHHHhhcChhhHHh
Confidence 58999999998863
No 11
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=21.75 E-value=18 Score=25.63 Aligned_cols=13 Identities=8% Similarity=0.278 Sum_probs=11.3
Q ss_pred chhhhhhcccccc
Q 047023 5 THNMLSSNIKGVA 17 (82)
Q Consensus 5 ThN~L~c~~k~c~ 17 (82)
+||+..|...+|-
T Consensus 101 vHNvvVCTLCSCY 113 (203)
T 1ugp_A 101 VHHVVVCTLASCY 113 (203)
T ss_dssp EEEEEECTTSCCC
T ss_pred ceeEEEeecccCc
Confidence 6999999997775
No 12
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=21.18 E-value=34 Score=24.94 Aligned_cols=14 Identities=0% Similarity=0.361 Sum_probs=11.8
Q ss_pred HhhcccccHHHHHH
Q 047023 42 KNIFPKIEWQALVQ 55 (82)
Q Consensus 42 ~~mlpkldW~aL~~ 55 (82)
.++||.|||+++.+
T Consensus 92 ~rlL~~lD~~~i~~ 105 (331)
T 4e5s_A 92 NGLLKYLDYDLIRE 105 (331)
T ss_dssp GGGGGGCCHHHHHT
T ss_pred HHHHhhcChhHHHh
Confidence 58999999998763
No 13
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=21.14 E-value=39 Score=24.57 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=12.4
Q ss_pred HhhcccccHHHHHH
Q 047023 42 KNIFPKIEWQALVQ 55 (82)
Q Consensus 42 ~~mlpkldW~aL~~ 55 (82)
.++||.|||+++.+
T Consensus 94 ~rlLp~LD~~~i~~ 107 (311)
T 1zl0_A 94 GQLLPGLDWGRLQA 107 (311)
T ss_dssp GGGTTTCCHHHHHH
T ss_pred HHHhhccchhhhhc
Confidence 58999999999886
No 14
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.66 E-value=15 Score=21.94 Aligned_cols=28 Identities=7% Similarity=0.253 Sum_probs=23.2
Q ss_pred CCCHHHHHhhcccccHHHHHHHHHhcCCC
Q 047023 35 DFNPDFLKNIFPKIEWQALVQASRSMGYA 63 (82)
Q Consensus 35 efN~eFi~~mlpkldW~aL~~aA~~lg~~ 63 (82)
+|..++|...|.+-+|+ ..+||+.||+.
T Consensus 40 ~~Er~~I~~aL~~~~GN-~s~AA~~LGIS 67 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRN-VSETARRLNMH 67 (81)
T ss_dssp HHHHHHHHHHHHHTTSC-HHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHhCCC
Confidence 45678899999999988 57899999974
No 15
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=20.32 E-value=1e+02 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.445 Sum_probs=23.9
Q ss_pred cCCCHHHHHhhcc----cccHHHHHHHHHhcCC
Q 047023 34 VDFNPDFLKNIFP----KIEWQALVQASRSMGY 62 (82)
Q Consensus 34 ~efN~eFi~~mlp----kldW~aL~~aA~~lg~ 62 (82)
..++++-|++.++ .+....|..+|+.+|+
T Consensus 31 ~~~s~~~L~~~~~~~~~g~s~~~l~~~a~~~Gl 63 (156)
T 3k8u_A 31 SNYSIAYLRELSKTNKQGTTALGIVEAAKKLGF 63 (156)
T ss_dssp CCCCHHHHHHHTTCBTTBCCHHHHHHHHHHTTE
T ss_pred CCCCHHHHHHHcCCCCCCcCHHHHHHHHHHCCC
Confidence 4567888888775 5789999999999995
Done!