Query 047023
Match_columns 82
No_of_seqs 108 out of 220
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 11:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1avqa_ c.52.1.13 (A:) lambda 66.2 1.5 0.00011 28.7 2.1 58 6-63 162-222 (228)
2 d1q7ha2 d.17.6.2 (A:3-68) Hypo 39.5 5.2 0.00038 22.1 1.1 22 42-63 2-23 (66)
3 d1b77a2 d.131.1.2 (A:111-228) 39.0 5.3 0.00039 24.1 1.2 20 46-65 9-28 (118)
4 d1kyza1 a.4.5.29 (A:13-119) Ca 34.4 2.4 0.00017 25.4 -1.1 19 1-19 69-88 (107)
5 d1umqa_ a.4.1.12 (A:) Photosyn 27.4 9.8 0.00072 19.9 0.9 27 36-63 20-46 (60)
6 d1tf3a2 g.37.1.1 (A:41-70) Tra 27.0 5.5 0.0004 18.8 -0.2 12 10-21 4-15 (30)
7 d2hd9a1 b.122.1.8 (A:1-145) Hy 26.9 19 0.0014 21.8 2.3 27 18-49 86-112 (145)
8 d1k77a_ c.1.15.5 (A:) Hypothet 24.7 25 0.0018 21.1 2.6 18 47-64 218-235 (260)
9 d1fp1d1 a.4.5.29 (D:19-128) Ch 23.4 4.8 0.00035 24.1 -1.1 19 1-19 71-90 (110)
10 d1aisa1 d.129.1.1 (A:1-92) TAT 23.4 1.4 0.0001 25.5 -3.6 35 3-41 9-43 (92)
No 1
>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda [TaxId: 10710]}
Probab=66.16 E-value=1.5 Score=28.75 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=40.5
Q ss_pred hhhhhhcccccc-cCCCceeeeeeEEEeccCCCHHHHHhhccccc--HHHHHHHHHhcCCC
Q 047023 6 HNMLSSNIKGVA-NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIE--WQALVQASRSMGYA 63 (82)
Q Consensus 6 hN~L~c~~k~c~-~gfPL~i~~~~~~~~e~efN~eFi~~mlpkld--W~aL~~aA~~lg~~ 63 (82)
|.|..+...-|. ..|--.+...+..+..++.|.+|+..|++++. |..+.++-+.||+.
T Consensus 162 ~qM~vtg~~~~~fv~~~p~~~~~~~~~~~i~rD~~~i~~l~~~~~~Fw~~v~~~~~~i~~~ 222 (228)
T d1avqa_ 162 YSMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIEKMDEALAEIGFV 222 (228)
T ss_dssp HHHHHHTCSEEEEEEECTTCSSCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCEEEEEEEccCCCCCceEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 455555555554 22222233446777889999999999999987 88888888888863
No 2
>d1q7ha2 d.17.6.2 (A:3-68) Hypothetical protein Ta1423, N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=39.50 E-value=5.2 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=20.2
Q ss_pred HhhcccccHHHHHHHHHhcCCC
Q 047023 42 KNIFPKIEWQALVQASRSMGYA 63 (82)
Q Consensus 42 ~~mlpkldW~aL~~aA~~lg~~ 63 (82)
+|||.|=|...+.+.+.++|+.
T Consensus 2 kHfiSKke~K~i~~~m~~~GID 23 (66)
T d1q7ha2 2 KHFISKKEAKRIWEQMSRYGID 23 (66)
T ss_dssp CEECCHHHHHHHHHHHHTTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCcc
Confidence 5899999999999999999975
No 3
>d1b77a2 d.131.1.2 (A:111-228) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=38.98 E-value=5.3 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.2
Q ss_pred ccccHHHHHHHHHhcCCCCC
Q 047023 46 PKIEWQALVQASRSMGYAEL 65 (82)
Q Consensus 46 pkldW~aL~~aA~~lg~~~L 65 (82)
..=||..|.+||..||+++|
T Consensus 9 ~~ddl~~l~kAa~vl~lpdl 28 (118)
T d1b77a2 9 KAEDLQQLLRVSRGLQIDTI 28 (118)
T ss_dssp CHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHhcCCCcE
Confidence 44578999999999997664
No 4
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=34.35 E-value=2.4 Score=25.40 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=14.2
Q ss_pred Ccccch-hhhhhcccccccC
Q 047023 1 MRLLTH-NMLSSNIKGVANG 19 (82)
Q Consensus 1 MrLlTh-N~L~c~~k~c~~g 19 (82)
||+|+| ++++|..+....|
T Consensus 69 lR~Las~~vf~~~~~~~~dg 88 (107)
T d1kyza1 69 LRLLACYIILTCSVRTQQDG 88 (107)
T ss_dssp HHHHHHTTSEEEEEEECTTS
T ss_pred HHHHHhcCceEEeeecCCCC
Confidence 788885 7999987665544
No 5
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.38 E-value=9.8 Score=19.86 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCHHHHHhhcccccHHHHHHHHHhcCCC
Q 047023 36 FNPDFLKNIFPKIEWQALVQASRSMGYA 63 (82)
Q Consensus 36 fN~eFi~~mlpkldW~aL~~aA~~lg~~ 63 (82)
+-.+.|...|.+=+|+ .-+||+.||++
T Consensus 20 ~Er~~I~~aL~~~~gn-~~~aA~~LGIs 46 (60)
T d1umqa_ 20 VRWEHIQRIYEMCDRN-VSETARRLNMH 46 (60)
T ss_dssp HHHHHHHHHHHHTTSC-HHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHCCC
Confidence 3468999999999999 67899999974
No 6
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=26.96 E-value=5.5 Score=18.79 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.3
Q ss_pred hhcccccccCCC
Q 047023 10 SSNIKGVANGFP 21 (82)
Q Consensus 10 ~c~~k~c~~gfP 21 (82)
-|.-.||..||-
T Consensus 4 pc~~egc~kgf~ 15 (30)
T d1tf3a2 4 PCKEEGCEKGFT 15 (30)
T ss_dssp ECCCSSCCCEES
T ss_pred Ccccccccccch
Confidence 478889988874
No 7
>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.91 E-value=19 Score=21.84 Aligned_cols=27 Identities=11% Similarity=0.560 Sum_probs=20.0
Q ss_pred cCCCceeeeeeEEEeccCCCHHHHHhhccccc
Q 047023 18 NGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIE 49 (82)
Q Consensus 18 ~gfPL~i~~~~~~~~e~efN~eFi~~mlpkld 49 (82)
..||.++....+.+.|+++.| ++++|+
T Consensus 86 ~~~P~R~~v~~~~~~ev~i~~-----l~~~L~ 112 (145)
T d2hd9a1 86 ETYPYRVKIKPIKIGEINFKP-----LINDLK 112 (145)
T ss_dssp CCCCEEEEEEEEEEEEEESGG-----GGGGCT
T ss_pred ceEEEEEEeEEeecccccHHH-----HHhHHH
Confidence 469999999888888888753 555554
No 8
>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}
Probab=24.70 E-value=25 Score=21.13 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHhcCCCC
Q 047023 47 KIEWQALVQASRSMGYAE 64 (82)
Q Consensus 47 kldW~aL~~aA~~lg~~~ 64 (82)
.|||.+++++-++.|+.+
T Consensus 218 ~id~~~i~~~L~~~GY~G 235 (260)
T d1k77a_ 218 EINYPWLFRLFDEVGYQG 235 (260)
T ss_dssp SSCHHHHHHHHHHTTCCS
T ss_pred ccCHHHHHHHHHHhCCCc
Confidence 689999999999999865
No 9
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=23.39 E-value=4.8 Score=24.10 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=13.7
Q ss_pred Ccccc-hhhhhhcccccccC
Q 047023 1 MRLLT-HNMLSSNIKGVANG 19 (82)
Q Consensus 1 MrLlT-hN~L~c~~k~c~~g 19 (82)
||+|+ |++++|.......|
T Consensus 71 LRlLas~~vf~~~~~~~~~g 90 (110)
T d1fp1d1 71 LRLLASYSVLTSTTRTIEDG 90 (110)
T ss_dssp HHHHHHTTSEEEEEEECTTS
T ss_pred HHHHHHcCccccccccCCCC
Confidence 68887 77999986655444
No 10
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=23.36 E-value=1.4 Score=25.53 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=20.7
Q ss_pred ccchhhhhhcccccccCCCceeeeeeEEEeccCCCHHHH
Q 047023 3 LLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFL 41 (82)
Q Consensus 3 LlThN~L~c~~k~c~~gfPL~i~~~~~~~~e~efN~eFi 41 (82)
+=.||+.+ .|.-|||+.+..-......++||||--
T Consensus 9 ~~I~NiVa----s~~l~~~idL~~la~~~~~~~YePe~f 43 (92)
T d1aisa1 9 LRIENIVA----SVDLFAQLDLEKVLDLCPNSKYNPEEF 43 (92)
T ss_dssp EEEEEEEE----EEECCSCCCHHHHTTTSTTCBCCTTTC
T ss_pred EEEEEEEE----EEECCCCccHHHHHhhCCCCEECcccC
Confidence 34566643 244678887766333345688888743
Done!