BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047025
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVR 62
A+YY++LGV +AS +D+KKAY K+A +W+PDK PDNK+EAE K V EAYE++SD +
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 63 CKL 65
L
Sbjct: 69 RSL 71
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 47/63 (74%)
Query: 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVR 62
A YY+IL V R+AS DD+KKAY + A +W+PDK PDNK+ AE K V EAYE++SD+ +
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 63 CKL 65
++
Sbjct: 62 REI 64
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59
DYY++L V R AS + +KKAY K+A KW+PDK P+NK+EAE + +V EAYE++SD
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD 65
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63
DYY+ILGV RNAS ++KKAY ++A K++PD D+ K A+ K +++ EAYE++SD+V+
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKR 66
Query: 64 K 64
K
Sbjct: 67 K 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQV 61
G Y +LG+D+NA+ DD+KK+Y K+A K++PDK PDN EA K + A+ I++D
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDAT 74
Query: 62 R 62
+
Sbjct: 75 K 75
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63
DYY+ILGV + A +++KAY+++A K++PD+ KEAEAK + EAYE+++D
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEAEAKFKEIKEAYEVLTDS--- 59
Query: 64 KLQKGPRLNPYG 75
QK + YG
Sbjct: 60 --QKRAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63
DYY+ILGV + A +++KAY+++A K++PD+ KEAEAK + EAYE+++D
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEAEAKFKEIKEAYEVLTDS--- 59
Query: 64 KLQKGPRLNPYG 75
QK + YG
Sbjct: 60 --QKRAAYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63
DYY+ILGV + A +++KAY+++A K++PD+ KEAEAK + EAYE+++D
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR-NQGDKEAEAKFKEIKEAYEVLTDS--- 59
Query: 64 KLQKGPRLNPYG 75
QK + YG
Sbjct: 60 --QKRAAYDQYG 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 5 YYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64
YY ILGV ++AS +KKA+ K+A K++PDK + +AEAK + EAYE +SD R K
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDK--NKSPDAEAKFREIAEAYETLSDANRRK 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 5 YYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64
YY +LGV +AS ++LKKAY KMA K++PDK PD ++ ++ +AYE++SD+ + +
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ----FKQISQAYEVLSDEKKRQ 65
Query: 65 L 65
+
Sbjct: 66 I 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60
D Y++LGV R AS D+KKAY+K+A +W+PDK D AE + ++ +AYEI+S++
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNE 72
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVR 62
YY +LGV NA+ ++LKKAY K+A K++PDK P+ E E K ++ +AYE++SD +
Sbjct: 6 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN---EGE-KFKQISQAYEVLSDAKK 61
Query: 63 CKL 65
+L
Sbjct: 62 REL 64
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59
G DYY+ LG+ R AS +++K+AY + A +++PDK + + AE K + EAY+++SD
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDK--NKEPGAEEKFKEIAEAYDVLSD 57
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59
DYY+ILGV R AS +DLKKAY ++A K++PDK ++ A + AY ++S+
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK--NHAPGATEAFKAIGTAYAVLSN 61
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVR 62
DYY ILGV +K AY ++A K++PD +N +AEAK + EA+E++ D+ R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQR 85
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60
++Y +LGV + AS ++++A++K+A K +PDK P+N A ++ AYE++ D+
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDE 77
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPD--KYPDNKKEAEAKLNRVCEAYEIVSDQV 61
DYY I+GV +K AY ++A K++PD K PD AEA+ V EA+E++SD+
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD----AEARFKEVAEAWEVLSDEQ 61
Query: 62 R 62
R
Sbjct: 62 R 62
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60
++Y +LGV + AS ++++A++K+A K +PDK P+N A ++ AYE++ D+
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDE 58
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD 38
DYYKILGV RNA ++ KAY K+A +W+PD + +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD 38
DYYKILGV RNA ++ KAY K+A +W+PD + +
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 6 YKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59
Y +LGV +A+ +LKK Y K A K++PDK P E K + EA+EI++D
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK-PTGDTE---KFKEISEAFEILND 60
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60
DYY +LG D +S + + ++ A + +PDK+P+N K E ++ +A EI++++
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNE 76
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYP-----DNKKEAEAKLNRVCEAYEIVS 58
D+Y ILG D +A+ DLK+ Y+K+ ++PDK +E K + +A++I+
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 59 DQVRCKLQKGPRLNPYGG 76
++ K R P G
Sbjct: 77 NEETKKKYDLQRSGPSSG 94
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDK 35
D+Y ILG D +A+ DLK+ Y+K+ ++PDK
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDK 42
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 6 YKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV-SDQVRCK 64
Y +LGV A+ +K AY + ++PD+ + + AE + R+ +AY ++ S +R K
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSATLRRK 78
Query: 65 LQKG 68
+G
Sbjct: 79 YDRG 82
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDK 35
D + +LGV AS D++ KAY K+A +PDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 6 YKILGVDRNA-SCDDLKKAYEKMAAKWNPDKYPDNKKE---AEAKLNRVCEAYEIVSD 59
Y +L V+R L KAY +A K +PD+ NK+E AE + + AYE + D
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRVIATAYETLKD 74
>pdb|3KS7|A Chain A, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|B Chain B, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|C Chain C, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
pdb|3KS7|D Chain D, Crystal Structure Of Putative Peptide:n-Glycosidase F
(Pngase F) (Yp_210507.1) From Bacteroides Fragilis Nctc
9343 At 2.30 A Resolution
Length = 397
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 24 YEKMAAKWNPDKYPDNKKEAEA 45
+E + +++PD YPDN EA+
Sbjct: 19 FENVNVRFSPDTYPDNYNEADG 40
>pdb|1YLK|A Chain A, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|B Chain B, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|C Chain C, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
pdb|1YLK|D Chain D, Crystal Structure Of Rv1284 From Mycobacterium
Tuberculosis In Complex With Thiocyanate
Length = 172
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 18 DDLKKAYEK---MAAKWNPDKYPDNKKEAEAKLNRV 50
DD K+A + + W+P+ YPD ++ L R+
Sbjct: 108 DDFKRAIQDETGIRPTWSPESYPDAVEDVRQSLRRI 143
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 17 CDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74
CD Y+K + D + +++ E ++NR E E +++VR K+++ ++ Y
Sbjct: 176 CDPGHPIYQKWIGTYGGDWF---RQQVEEQINRFDELAENSTEEVRAKMKENFVISSY 230
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 17 CDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74
CD Y+K + D + +++ E ++NR E E +++VR K+++ ++ Y
Sbjct: 176 CDPGHPIYQKWIGTYGGDWF---RQQVEEQINRFDELAENSTEEVRAKMKENFVISSY 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,043,009
Number of Sequences: 62578
Number of extensions: 110915
Number of successful extensions: 302
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 44
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 45 (21.9 bits)