Query 047025
Match_columns 85
No_of_seqs 179 out of 1178
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 06:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.3E-31 2.8E-36 182.1 9.3 73 1-74 2-74 (371)
2 KOG0713 Molecular chaperone (D 100.0 1.2E-28 2.5E-33 165.0 7.8 70 2-72 15-84 (336)
3 PRK14288 chaperone protein Dna 99.9 4.3E-27 9.4E-32 161.2 8.9 71 1-72 1-71 (369)
4 PRK14296 chaperone protein Dna 99.9 2.4E-26 5.1E-31 157.7 8.6 70 1-72 2-71 (372)
5 KOG0712 Molecular chaperone (D 99.9 1.2E-25 2.7E-30 151.4 7.2 69 2-74 3-71 (337)
6 PRK14279 chaperone protein Dna 99.9 1.6E-25 3.5E-30 154.5 7.3 69 1-70 7-75 (392)
7 PRK14285 chaperone protein Dna 99.9 5.9E-25 1.3E-29 150.6 8.4 71 1-72 1-71 (365)
8 PRK14282 chaperone protein Dna 99.9 8.6E-25 1.9E-29 149.9 8.5 71 2-72 3-73 (369)
9 PRK14291 chaperone protein Dna 99.9 7.4E-25 1.6E-29 150.8 8.2 70 1-72 1-70 (382)
10 PRK14278 chaperone protein Dna 99.9 7.1E-25 1.5E-29 150.7 7.8 69 1-71 1-69 (378)
11 PRK14286 chaperone protein Dna 99.9 9.5E-25 2.1E-29 149.8 8.3 70 2-72 3-72 (372)
12 PRK14290 chaperone protein Dna 99.9 3E-24 6.6E-29 147.0 9.5 73 1-73 1-73 (365)
13 PRK14295 chaperone protein Dna 99.9 1.5E-24 3.3E-29 149.5 8.0 67 1-68 7-73 (389)
14 PRK14301 chaperone protein Dna 99.9 2.9E-24 6.2E-29 147.5 8.7 70 2-72 3-72 (373)
15 PRK14287 chaperone protein Dna 99.9 2.4E-24 5.2E-29 147.8 8.2 69 2-72 3-71 (371)
16 PRK14276 chaperone protein Dna 99.9 2.2E-24 4.8E-29 148.3 8.0 69 2-72 3-71 (380)
17 PRK14299 chaperone protein Dna 99.9 3.1E-24 6.8E-29 143.3 8.0 68 2-71 3-70 (291)
18 PF00226 DnaJ: DnaJ domain; I 99.9 5.2E-24 1.1E-28 113.8 7.1 64 4-67 1-64 (64)
19 PRK14281 chaperone protein Dna 99.9 4.1E-24 8.8E-29 147.7 8.1 71 1-72 1-71 (397)
20 PRK14283 chaperone protein Dna 99.9 3.7E-24 7.9E-29 147.2 7.8 68 2-71 4-71 (378)
21 PRK14298 chaperone protein Dna 99.9 4.2E-24 9E-29 146.9 7.8 69 2-72 4-72 (377)
22 PTZ00037 DnaJ_C chaperone prot 99.9 3.5E-24 7.7E-29 148.8 7.2 67 2-73 27-93 (421)
23 PRK14294 chaperone protein Dna 99.9 7.8E-24 1.7E-28 145.1 8.5 69 3-72 4-72 (366)
24 PRK14277 chaperone protein Dna 99.9 7.4E-24 1.6E-28 146.0 8.2 69 2-71 4-72 (386)
25 PRK14280 chaperone protein Dna 99.9 6.9E-24 1.5E-28 145.8 8.0 69 2-72 3-71 (376)
26 PRK14297 chaperone protein Dna 99.9 9.1E-24 2E-28 145.3 8.5 70 2-72 3-72 (380)
27 KOG0717 Molecular chaperone (D 99.9 2.4E-24 5.1E-29 148.8 5.0 72 1-72 6-77 (508)
28 PRK14300 chaperone protein Dna 99.9 1.3E-23 2.9E-28 144.2 7.3 69 1-71 1-69 (372)
29 PRK14284 chaperone protein Dna 99.9 2.4E-23 5.3E-28 143.6 8.6 69 3-72 1-69 (391)
30 PRK10767 chaperone protein Dna 99.9 2.9E-23 6.4E-28 142.4 8.8 70 2-72 3-72 (371)
31 PRK14293 chaperone protein Dna 99.9 2.4E-23 5.2E-28 143.0 8.1 70 1-72 1-70 (374)
32 KOG0718 Molecular chaperone (D 99.9 1.8E-23 4E-28 144.8 6.1 72 3-74 9-82 (546)
33 KOG0715 Molecular chaperone (D 99.9 4.2E-23 9.2E-28 137.7 6.8 74 4-79 44-117 (288)
34 TIGR02349 DnaJ_bact chaperone 99.9 8.5E-23 1.8E-27 139.4 7.9 67 4-72 1-67 (354)
35 PRK14289 chaperone protein Dna 99.9 1.7E-22 3.6E-27 139.3 8.4 69 2-71 4-72 (386)
36 KOG0716 Molecular chaperone (D 99.9 7.9E-23 1.7E-27 133.7 6.0 69 2-71 30-98 (279)
37 PRK10266 curved DNA-binding pr 99.9 9.9E-23 2.2E-27 136.9 6.7 66 3-70 4-69 (306)
38 PRK14292 chaperone protein Dna 99.9 1.6E-22 3.6E-27 138.7 7.7 68 3-72 2-69 (371)
39 KOG0691 Molecular chaperone (D 99.9 1.9E-22 4.2E-27 134.5 7.3 70 2-72 4-73 (296)
40 PTZ00341 Ring-infected erythro 99.9 6.6E-22 1.4E-26 146.1 8.4 70 2-73 572-641 (1136)
41 smart00271 DnaJ DnaJ molecular 99.9 1.6E-21 3.6E-26 102.7 6.9 59 3-61 1-59 (60)
42 KOG0719 Molecular chaperone (D 99.8 3.7E-21 8E-26 123.9 7.0 73 1-73 12-85 (264)
43 cd06257 DnaJ DnaJ domain or J- 99.8 9.7E-21 2.1E-25 98.1 7.1 55 4-59 1-55 (55)
44 TIGR03835 termin_org_DnaJ term 99.8 8.2E-21 1.8E-25 137.9 8.4 78 3-82 2-79 (871)
45 KOG0624 dsRNA-activated protei 99.8 4.9E-20 1.1E-24 125.3 7.6 66 3-68 394-461 (504)
46 COG2214 CbpA DnaJ-class molecu 99.8 1.2E-19 2.5E-24 114.6 8.2 68 2-69 5-72 (237)
47 PHA03102 Small T antigen; Revi 99.8 1.1E-19 2.4E-24 111.6 7.2 65 4-73 6-72 (153)
48 PRK05014 hscB co-chaperone Hsc 99.8 2E-19 4.3E-24 112.5 7.6 65 3-67 1-71 (171)
49 KOG0721 Molecular chaperone (D 99.8 1.7E-19 3.6E-24 115.1 6.6 69 3-72 99-167 (230)
50 PRK01356 hscB co-chaperone Hsc 99.8 6.5E-19 1.4E-23 109.7 7.5 65 3-67 2-70 (166)
51 PRK00294 hscB co-chaperone Hsc 99.8 2.9E-18 6.4E-23 107.4 7.8 66 2-67 3-74 (173)
52 PRK03578 hscB co-chaperone Hsc 99.8 4.3E-18 9.3E-23 106.9 7.6 66 2-67 5-76 (176)
53 KOG0550 Molecular chaperone (D 99.7 1.3E-17 2.9E-22 114.9 6.1 67 3-69 373-439 (486)
54 KOG0714 Molecular chaperone (D 99.7 2.5E-17 5.5E-22 108.0 6.9 75 1-75 1-75 (306)
55 KOG0720 Molecular chaperone (D 99.7 1.9E-17 4.2E-22 114.8 5.8 66 2-69 234-299 (490)
56 KOG0722 Molecular chaperone (D 99.7 8.4E-18 1.8E-22 110.0 3.4 64 3-68 33-96 (329)
57 PTZ00100 DnaJ chaperone protei 99.7 3.1E-16 6.7E-21 92.3 6.1 51 3-58 65-115 (116)
58 PRK09430 djlA Dna-J like membr 99.6 3E-16 6.4E-21 104.0 5.9 57 3-59 200-262 (267)
59 PRK01773 hscB co-chaperone Hsc 99.6 9.2E-16 2E-20 96.1 7.8 65 3-67 2-72 (173)
60 PHA02624 large T antigen; Prov 99.6 5.5E-16 1.2E-20 111.4 7.2 59 3-66 11-71 (647)
61 KOG1150 Predicted molecular ch 99.6 3.9E-15 8.5E-20 94.5 6.4 64 2-65 52-115 (250)
62 COG5407 SEC63 Preprotein trans 99.5 7.2E-14 1.6E-18 97.5 6.3 69 3-71 98-170 (610)
63 TIGR00714 hscB Fe-S protein as 99.5 3.2E-13 7E-18 83.5 7.0 55 15-69 3-61 (157)
64 COG5269 ZUO1 Ribosome-associat 99.2 2.1E-11 4.7E-16 80.9 4.9 70 3-72 43-116 (379)
65 KOG0568 Molecular chaperone (D 99.1 1.2E-10 2.6E-15 76.0 4.7 56 3-60 47-103 (342)
66 KOG0723 Molecular chaperone (D 98.9 5.6E-09 1.2E-13 60.4 5.4 49 7-60 60-108 (112)
67 KOG1789 Endocytosis protein RM 98.8 1.4E-08 3E-13 77.5 6.0 52 4-59 1282-1337(2235)
68 KOG3192 Mitochondrial J-type c 98.5 3.1E-07 6.8E-12 56.5 5.1 65 3-67 8-78 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.9 1.3E-05 2.8E-10 50.4 3.6 64 4-67 2-71 (174)
70 KOG0431 Auxilin-like protein a 97.8 3.1E-05 6.6E-10 55.1 4.5 49 10-58 395-449 (453)
71 COG1076 DjlA DnaJ-domain-conta 97.8 1.8E-05 4E-10 49.7 2.9 55 3-57 113-173 (174)
72 PF03656 Pam16: Pam16; InterP 97.5 0.00057 1.2E-08 41.1 5.8 51 6-61 61-111 (127)
73 PF13446 RPT: A repeated domai 96.3 0.023 4.9E-07 29.7 5.2 26 4-29 6-31 (62)
74 PF14687 DUF4460: Domain of un 94.8 0.1 2.2E-06 30.7 4.7 49 13-61 4-55 (112)
75 PF11833 DUF3353: Protein of u 93.9 0.33 7.1E-06 31.2 5.9 38 12-58 1-38 (194)
76 KOG0724 Zuotin and related mol 93.4 0.11 2.3E-06 35.6 3.3 54 14-67 3-59 (335)
77 COG5552 Uncharacterized conser 91.9 1.3 2.7E-05 24.4 5.8 38 1-38 1-38 (88)
78 KOG3442 Uncharacterized conser 88.1 0.97 2.1E-05 27.2 3.4 33 6-38 62-94 (132)
79 PF10041 DUF2277: Uncharacteri 87.9 3.1 6.6E-05 22.9 7.0 58 2-59 2-61 (78)
80 PF07709 SRR: Seven Residue Re 77.4 1.6 3.5E-05 16.0 0.9 13 46-58 2-14 (14)
81 KOG2320 RAS effector RIN1 (con 68.5 14 0.00031 27.9 4.7 37 11-57 397-433 (651)
82 KOG3960 Myogenic helix-loop-he 67.9 4 8.7E-05 27.5 1.7 14 45-58 128-141 (284)
83 PF08447 PAS_3: PAS fold; Int 66.6 1.8 3.9E-05 23.1 -0.1 30 2-35 5-35 (91)
84 cd01388 SOX-TCF_HMG-box SOX-TC 66.2 15 0.00033 19.2 3.6 39 22-66 14-52 (72)
85 PF12434 Malate_DH: Malate deh 62.8 12 0.00027 16.4 2.2 18 16-33 9-26 (28)
86 cd01389 MATA_HMG-box MATA_HMG- 58.7 25 0.00055 18.6 3.6 38 21-64 13-50 (77)
87 PF03820 Mtc: Tricarboxylate c 57.7 43 0.00093 23.2 5.3 52 13-64 46-122 (308)
88 PF12725 DUF3810: Protein of u 56.6 14 0.00031 25.4 2.9 57 4-60 83-149 (318)
89 PF12057 DUF3538: Domain of un 56.1 25 0.00053 21.0 3.5 16 44-59 52-67 (120)
90 cd01390 HMGB-UBF_HMG-box HMGB- 56.1 25 0.00055 17.6 3.4 35 24-64 15-49 (66)
91 cd00084 HMG-box High Mobility 55.5 25 0.00055 17.4 3.5 38 21-64 12-49 (66)
92 PF11126 Phage_DsbA: Transcrip 54.7 33 0.00072 18.5 3.5 32 22-57 35-66 (69)
93 CHL00185 ycf59 magnesium-proto 54.5 24 0.00052 24.8 3.6 56 3-58 250-305 (351)
94 KOG0527 HMG-box transcription 53.4 19 0.00041 25.2 3.1 40 22-67 75-114 (331)
95 cd01047 ACSF Aerobic Cyclase S 50.9 36 0.00079 23.7 4.0 55 3-57 234-288 (323)
96 PRK13654 magnesium-protoporphy 49.0 34 0.00074 24.1 3.7 55 3-57 254-308 (355)
97 cd01780 PLC_epsilon_RA Ubiquit 47.8 21 0.00045 20.4 2.1 34 3-36 11-44 (93)
98 TIGR02029 AcsF magnesium-proto 46.0 41 0.00088 23.6 3.7 55 3-57 244-298 (337)
99 COG0089 RplW Ribosomal protein 45.4 20 0.00043 20.5 1.8 20 8-27 25-44 (94)
100 COG2879 Uncharacterized small 43.6 52 0.0011 17.5 3.5 16 23-38 27-42 (65)
101 PF15178 TOM_sub5: Mitochondri 43.0 45 0.00097 16.6 3.1 24 6-29 2-25 (51)
102 PF00076 RRM_1: RNA recognitio 42.3 20 0.00044 17.7 1.5 21 8-28 3-23 (70)
103 PF04949 Transcrip_act: Transc 42.1 45 0.00096 20.8 3.1 25 41-65 62-86 (159)
104 CHL00030 rpl23 ribosomal prote 42.0 25 0.00054 20.0 1.9 20 8-27 23-42 (93)
105 PLN02508 magnesium-protoporphy 39.8 59 0.0013 23.0 3.8 53 3-55 250-302 (357)
106 PRK00810 nifW nitrogenase stab 39.7 61 0.0013 19.1 3.4 62 4-66 20-88 (113)
107 PF04282 DUF438: Family of unk 39.2 17 0.00036 19.7 0.9 27 8-34 6-32 (71)
108 PF00505 HMG_box: HMG (high mo 39.0 40 0.00086 17.0 2.4 36 22-63 13-48 (69)
109 PF10475 DUF2450: Protein of u 39.0 81 0.0017 21.3 4.3 31 19-60 183-213 (291)
110 TIGR03636 L23_arch archaeal ri 38.0 32 0.0007 18.8 1.9 20 8-27 18-37 (77)
111 PF03206 NifW: Nitrogen fixati 37.8 84 0.0018 18.3 5.6 64 3-66 15-85 (105)
112 COG3755 Uncharacterized protei 36.6 68 0.0015 19.4 3.3 42 17-66 50-92 (127)
113 PRK05738 rplW 50S ribosomal pr 35.9 35 0.00076 19.2 1.9 20 8-27 24-43 (92)
114 smart00398 HMG high mobility g 35.9 61 0.0013 16.1 3.1 35 24-64 16-50 (70)
115 PRK10613 hypothetical protein; 35.8 15 0.00032 20.0 0.3 11 16-26 64-74 (74)
116 PF10769 DUF2594: Protein of u 35.5 15 0.00033 20.0 0.3 11 16-26 64-74 (74)
117 PRK15321 putative type III sec 35.3 94 0.002 18.1 5.1 48 7-54 25-73 (120)
118 smart00427 H2B Histone H2B. 35.0 88 0.0019 17.7 4.1 37 25-63 8-45 (89)
119 PF04967 HTH_10: HTH DNA bindi 34.8 21 0.00045 18.1 0.8 18 9-26 33-50 (53)
120 KOG2577 Transcription factor E 34.5 46 0.001 23.6 2.6 36 20-68 76-111 (354)
121 cd08071 MPN_DUF2466 Mov34/MPN/ 33.7 79 0.0017 18.3 3.2 28 31-58 68-95 (113)
122 KOG3767 Sideroflexin [General 33.6 58 0.0013 22.8 2.9 27 10-36 61-87 (328)
123 smart00360 RRM RNA recognition 33.0 54 0.0012 15.5 2.2 20 8-27 1-20 (71)
124 smart00362 RRM_2 RNA recogniti 31.9 56 0.0012 15.5 2.2 20 8-27 4-23 (72)
125 PF14606 Lipase_GDSL_3: GDSL-l 31.3 32 0.0007 21.9 1.4 52 8-59 64-133 (178)
126 KOG3354 Gluconate kinase [Carb 30.8 10 0.00022 24.2 -0.9 42 17-58 91-132 (191)
127 PF07739 TipAS: TipAS antibiot 30.7 1E+02 0.0023 17.2 4.6 48 10-67 51-99 (118)
128 smart00335 ANX Annexin repeats 29.6 28 0.0006 16.8 0.7 21 8-28 10-30 (53)
129 PRK10141 DNA-binding transcrip 29.5 61 0.0013 19.1 2.3 20 48-67 4-23 (117)
130 PF01388 ARID: ARID/BRIGHT DNA 28.6 93 0.002 16.8 2.9 10 24-33 60-69 (92)
131 PRK14548 50S ribosomal protein 28.6 56 0.0012 18.2 1.9 20 8-27 25-44 (84)
132 PF14893 PNMA: PNMA 28.3 55 0.0012 22.9 2.2 27 1-27 13-42 (331)
133 PF00276 Ribosomal_L23: Riboso 27.6 57 0.0012 18.2 1.8 21 8-28 24-44 (91)
134 PF12840 HTH_20: Helix-turn-he 27.6 58 0.0012 16.3 1.8 16 52-67 2-17 (61)
135 PF05370 DUF749: Domain of unk 27.4 62 0.0013 18.3 1.9 33 2-34 46-78 (87)
136 PF11608 Limkain-b1: Limkain b 27.3 84 0.0018 17.8 2.4 26 7-32 6-31 (90)
137 cd00590 RRM RRM (RNA recogniti 26.9 77 0.0017 15.1 2.2 20 8-27 4-23 (74)
138 PLN00158 histone H2B; Provisio 26.1 1.5E+02 0.0033 17.6 4.3 37 25-63 34-71 (116)
139 PRK13798 putative OHCU decarbo 26.0 1.7E+02 0.0038 18.2 6.0 44 13-56 41-110 (166)
140 PF11590 DNAPolymera_Pol: DNA 25.6 93 0.002 15.0 2.5 16 42-57 25-40 (41)
141 cd04869 ACT_GcvR_2 ACT domains 25.4 1.1E+02 0.0024 15.8 2.8 23 9-31 51-73 (81)
142 PRK12547 RNA polymerase sigma 25.3 49 0.0011 19.9 1.4 26 8-33 137-162 (164)
143 PF09938 DUF2170: Uncharacteri 24.8 83 0.0018 19.3 2.3 26 2-27 98-124 (140)
144 smart00143 PI3K_p85B PI3-kinas 24.5 98 0.0021 17.0 2.4 23 8-30 3-25 (78)
145 PF14259 RRM_6: RNA recognitio 24.3 52 0.0011 16.4 1.3 18 10-27 5-22 (70)
146 PF00427 PBS_linker_poly: Phyc 23.6 64 0.0014 19.5 1.6 17 18-34 12-28 (131)
147 PRK10455 periplasmic protein; 23.5 1.5E+02 0.0033 18.4 3.4 21 46-67 119-139 (161)
148 TIGR03180 UraD_2 OHCU decarbox 23.4 1.9E+02 0.0042 17.8 6.0 24 13-36 31-65 (158)
149 PTZ00463 histone H2B; Provisio 23.4 1.8E+02 0.0038 17.4 4.2 37 25-63 35-72 (117)
150 PF09907 DUF2136: Uncharacteri 23.3 36 0.00078 18.5 0.5 24 4-27 8-31 (76)
151 PF06975 DUF1299: Protein of u 23.2 17 0.00038 17.6 -0.7 11 51-61 10-20 (47)
152 PF06767 Sif: Sif protein; In 22.6 2.9E+02 0.0062 19.5 4.8 41 21-66 44-84 (337)
153 PF04328 DUF466: Protein of un 22.4 1.1E+02 0.0023 16.1 2.2 17 22-38 26-42 (65)
154 TIGR00824 EIIA-man PTS system, 22.3 1.7E+02 0.0037 16.8 3.3 31 5-35 29-59 (116)
155 PRK09649 RNA polymerase sigma 22.2 56 0.0012 20.1 1.3 28 7-34 154-181 (185)
156 PF02319 E2F_TDP: E2F/DP famil 22.0 56 0.0012 17.3 1.1 40 16-67 5-48 (71)
157 PRK15372 pathogenicity island 21.8 1.6E+02 0.0034 20.1 3.3 10 27-36 23-32 (292)
158 PF02216 B: B domain; InterPr 21.7 1.3E+02 0.0029 15.3 4.4 30 4-36 12-41 (54)
159 PLN02560 enoyl-CoA reductase 21.3 65 0.0014 22.2 1.5 28 8-35 17-44 (308)
160 KOG0906 Phosphatidylinositol 3 21.0 1.8E+02 0.004 22.8 3.8 57 2-58 623-693 (843)
161 PF09124 Endonuc-dimeris: T4 r 20.9 1.4E+02 0.003 15.3 2.7 20 11-30 32-51 (54)
162 PRK09636 RNA polymerase sigma 20.8 2.3E+02 0.0049 18.9 4.0 24 7-30 139-162 (293)
163 PTZ00191 60S ribosomal protein 20.8 89 0.0019 19.3 1.9 20 8-27 86-105 (145)
164 PF01099 Uteroglobin: Uteroglo 20.7 1.5E+02 0.0031 15.4 2.9 34 22-61 17-50 (67)
165 PF01929 Ribosomal_L14e: Ribos 20.4 1.4E+02 0.0031 16.2 2.5 20 8-27 16-35 (77)
166 smart00872 Alpha-mann_mid Alph 20.3 1.6E+02 0.0034 15.6 4.0 23 16-38 43-65 (79)
167 PF08726 EFhand_Ca_insen: Ca2+ 20.2 50 0.0011 17.6 0.7 13 15-27 3-15 (69)
168 PF01890 CbiG_C: Cobalamin syn 20.1 1.1E+02 0.0024 17.9 2.1 26 9-34 6-31 (121)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=182.13 Aligned_cols=73 Identities=41% Similarity=0.686 Sum_probs=68.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 74 (85)
|.+|||+||||+++||.+|||+|||+|+++||||+++.+ ++|+++|++|++||+||+||.+|+.||+++...+
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~-~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD-KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 578999999999999999999999999999999999942 8999999999999999999999999998888765
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=164.98 Aligned_cols=70 Identities=41% Similarity=0.690 Sum_probs=66.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
++|||+||||+.+|+..|||+|||+||+++|||+||++ +.|.+.|+.|+.||+||+||.+|+.||..+..
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 58999999999999999999999999999999999987 88999999999999999999999999977653
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=4.3e-27 Score=161.22 Aligned_cols=71 Identities=35% Similarity=0.605 Sum_probs=66.0
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|+.|||+||||+++||.+|||+|||+|+++||||+++.+ +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 1 ~~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999753 56899999999999999999999999987654
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=2.4e-26 Score=157.74 Aligned_cols=70 Identities=29% Similarity=0.483 Sum_probs=64.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
-.+|||+||||+++|+.++||+|||+|+++||||++++ +.|+++|++|++||+||+||.+|+.||..+..
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 04799999999999999999999999999999999986 67899999999999999999999999987643
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-25 Score=151.42 Aligned_cols=69 Identities=38% Similarity=0.626 Sum_probs=64.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 74 (85)
++.+|+||+|+++|+.+|||+|||+|+++||||++++ +.++|++|++||+||+||++|.+||..+....
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 6789999999999999999999999999999999988 78999999999999999999999998877543
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=1.6e-25 Score=154.48 Aligned_cols=69 Identities=38% Similarity=0.633 Sum_probs=64.4
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
|.+|||+||||+++|+.++||+|||+|+++||||+++.+ +.++++|++|++||+||+||.+|+.||+.+
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 468999999999999999999999999999999999753 678999999999999999999999999864
No 7
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=5.9e-25 Score=150.56 Aligned_cols=71 Identities=42% Similarity=0.634 Sum_probs=65.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|..|||+||||+++|+.++||+|||+|+++||||+++.. +.+.++|++|++||+||+||.+|..||+.+..
T Consensus 1 m~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 678999999999999999999999999999999998754 56889999999999999999999999987654
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=8.6e-25 Score=149.89 Aligned_cols=71 Identities=41% Similarity=0.781 Sum_probs=65.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
.+|||+||||+++|+.+|||+|||+|+++||||+++.....++++|++|++||+||+||.+|+.||..+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 47999999999999999999999999999999999865567899999999999999999999999987653
No 9
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=7.4e-25 Score=150.78 Aligned_cols=70 Identities=41% Similarity=0.659 Sum_probs=65.8
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|.+|||+||||+++|+.++||+|||+|++++|||++++ +.+.++|+.|++||+||+||.+|+.||..+..
T Consensus 1 ~~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 67899999999999999999999999999999999986 67889999999999999999999999987654
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=7.1e-25 Score=150.71 Aligned_cols=69 Identities=41% Similarity=0.664 Sum_probs=65.5
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
|.+|||+||||+++|+.++||+|||+|++++|||++++ +.++++|+.|++||+||+||.+|+.||..+.
T Consensus 1 m~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~ 69 (378)
T PRK14278 1 MARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69 (378)
T ss_pred CCCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhhhhhccCC
Confidence 77899999999999999999999999999999999986 7789999999999999999999999998764
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=9.5e-25 Score=149.83 Aligned_cols=70 Identities=39% Similarity=0.609 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+.|||+||||+++|+.++||+|||+|+++||||+++.+ +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 48999999999999999999999999999999998753 56889999999999999999999999987653
No 12
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=3e-24 Score=147.04 Aligned_cols=73 Identities=49% Similarity=0.793 Sum_probs=67.5
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
|..|||+||||+++|+.+||++|||+|++++|||+++.+...+.++|+.|++||++|+|+.+|..||..+...
T Consensus 1 m~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 6789999999999999999999999999999999998765578999999999999999999999999876543
No 13
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1.5e-24 Score=149.53 Aligned_cols=67 Identities=36% Similarity=0.691 Sum_probs=63.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
|+.|||+||||+++|+.++||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 578999999999999999999999999999999998753 5689999999999999999999999997
No 14
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.9e-24 Score=147.51 Aligned_cols=70 Identities=43% Similarity=0.696 Sum_probs=64.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
..|||+||||+++|+.++||+|||+|++++|||+++.. +.++++|++|++||+||+||.+|+.||..+..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 58999999999999999999999999999999999764 56889999999999999999999999987654
No 15
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.4e-24 Score=147.79 Aligned_cols=69 Identities=43% Similarity=0.640 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|+.|++||++|+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 4799999999999999999999999999999999875 67889999999999999999999999987654
No 16
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.2e-24 Score=148.33 Aligned_cols=69 Identities=38% Similarity=0.567 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+.|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 4899999999999999999999999999999999986 67889999999999999999999999987653
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=3.1e-24 Score=143.34 Aligned_cols=68 Identities=40% Similarity=0.619 Sum_probs=64.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|||+||||+++|+.++||+|||+|++++|||++++ +.++++|+.|++||++|+||.+|+.||..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999985 6789999999999999999999999997654
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.91 E-value=5.2e-24 Score=113.82 Aligned_cols=64 Identities=41% Similarity=0.691 Sum_probs=60.4
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
|||+||||+++++.++|+++|+++++.+|||+++.....+.+.|..|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987754578999999999999999999999997
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=4.1e-24 Score=147.73 Aligned_cols=71 Identities=46% Similarity=0.729 Sum_probs=65.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|..|||+||||+++|+.++||+|||+|++++|||+++.. +.++++|+.|++||++|+||.+|+.||..+..
T Consensus 1 ~~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 678999999999999999999999999999999999754 56889999999999999999999999986653
No 20
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=3.7e-24 Score=147.18 Aligned_cols=68 Identities=40% Similarity=0.647 Sum_probs=64.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
++|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||++|+||.+|+.||..+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 5799999999999999999999999999999999986 6789999999999999999999999997654
No 21
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=4.2e-24 Score=146.89 Aligned_cols=69 Identities=39% Similarity=0.659 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
.+|||+||||+++|+.+|||+|||+|++++|||++++ +.++++|++|++||++|+||.+|+.||+.+..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 4799999999999999999999999999999999976 67889999999999999999999999987653
No 22
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.90 E-value=3.5e-24 Score=148.83 Aligned_cols=67 Identities=30% Similarity=0.522 Sum_probs=61.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||..+...
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 5799999999999999999999999999999999864 479999999999999999999999876543
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.8e-24 Score=145.05 Aligned_cols=69 Identities=42% Similarity=0.714 Sum_probs=64.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
.|||+||||+++|+.++||+|||+|+++||||+++.. +.+++.|+.|++||+||+||.+|+.||..+..
T Consensus 4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence 7999999999999999999999999999999999754 56889999999999999999999999987654
No 24
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.4e-24 Score=146.01 Aligned_cols=69 Identities=46% Similarity=0.726 Sum_probs=64.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|||+||||+++|+.++||+|||+|+++||||+++.. +.++++|++|++||+||+||.+|+.||..+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 57999999999999999999999999999999999854 5688999999999999999999999998654
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=6.9e-24 Score=145.76 Aligned_cols=69 Identities=36% Similarity=0.624 Sum_probs=64.3
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
..|||+||||+++|+.++||+|||+|++++|||++++ +.++++|++|++||+||+||.+|+.||+.+..
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 3799999999999999999999999999999999986 66889999999999999999999999987653
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=9.1e-24 Score=145.31 Aligned_cols=70 Identities=40% Similarity=0.656 Sum_probs=64.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
..|||+||||+++|+.++||+|||+|+++||||+++.. +.++++|+.|++||+||+||.+|+.||+.+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 47999999999999999999999999999999999754 56889999999999999999999999987654
No 27
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-24 Score=148.83 Aligned_cols=72 Identities=36% Similarity=0.608 Sum_probs=68.1
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|.+.||+||||...|+..+||++||+|+++||||++|....++.+.|+.|+.||+|||||..|+.||+++..
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 457899999999999999999999999999999999998899999999999999999999999999987663
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=1.3e-23 Score=144.18 Aligned_cols=69 Identities=39% Similarity=0.622 Sum_probs=64.7
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
|.+|||+||||+++|+.++||+|||++++++|||+++. ..++++|++|++||++|+|+.+|+.||..+.
T Consensus 1 ~~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 78999999999999999999999999999999999875 5688899999999999999999999998654
No 29
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.4e-23 Score=143.63 Aligned_cols=69 Identities=43% Similarity=0.716 Sum_probs=64.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+|||+||||+++|+.++||+|||++++++|||++++. +.++++|+.|++||++|+||.+|+.||+.+..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 5899999999999999999999999999999999864 56889999999999999999999999987653
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.9e-23 Score=142.40 Aligned_cols=70 Identities=46% Similarity=0.723 Sum_probs=64.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
..|||+||||+++|+.++||+|||+|++++|||+++.. +.++++|++|++||++|+||.+|..||..+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence 57999999999999999999999999999999998753 56889999999999999999999999976653
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=2.4e-23 Score=142.99 Aligned_cols=70 Identities=39% Similarity=0.617 Sum_probs=65.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|..|||+||||+++|+.++|++|||++++++|||++++ +.+.++|+.|++||++|+||.+|+.||..+..
T Consensus 1 ~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 1 MAADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CCCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 67899999999999999999999999999999999876 56889999999999999999999999986653
No 32
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.8e-23 Score=144.76 Aligned_cols=72 Identities=31% Similarity=0.548 Sum_probs=65.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYP--DNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~--~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 74 (85)
.|||.+|+|+++||.+||++|||++++.+||||.. +.+..|++.|+.|++||+||+||.+|++||..+..+.
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 48999999999999999999999999999999985 4567899999999999999999999999996665543
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.2e-23 Score=137.71 Aligned_cols=74 Identities=43% Similarity=0.689 Sum_probs=67.5
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCCCCCCC
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPYGGIQG 79 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~ 79 (85)
|||+||||+++|+..|||+||++|++++|||.+.+ ..+.++|++|.+||++|+|+.+|..||..+....++.+|
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~--~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g 117 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD--KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGG 117 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC--cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccC
Confidence 89999999999999999999999999999999988 589999999999999999999999999887765434333
No 34
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.88 E-value=8.5e-23 Score=139.36 Aligned_cols=67 Identities=45% Similarity=0.711 Sum_probs=62.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|+.|++||++|+|+.+|..||..+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence 79999999999999999999999999999999974 66889999999999999999999999986654
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.7e-22 Score=139.29 Aligned_cols=69 Identities=41% Similarity=0.678 Sum_probs=64.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|||+||||+++|+.+||++|||+|++++|||+++.. +.++++|+.|++||++|+||.+|+.||..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 67999999999999999999999999999999999764 5689999999999999999999999997654
No 36
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.9e-23 Score=133.74 Aligned_cols=69 Identities=38% Similarity=0.596 Sum_probs=64.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|+|+||||+++|+.++||++||+|++++|||+++++ +++..+|++||+||++|+||.+|..||..+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-PEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 35799999999999999999999999999999999987 8889999999999999999999999996643
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.88 E-value=9.9e-23 Score=136.88 Aligned_cols=66 Identities=35% Similarity=0.597 Sum_probs=62.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
.|||+||||+++++.++||+|||+|++++|||+++. +.++++|++|++||++|+||.+|+.||..+
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 799999999999999999999999999999999876 578999999999999999999999999754
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.6e-22 Score=138.71 Aligned_cols=68 Identities=38% Similarity=0.635 Sum_probs=63.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+|||+||||+++|+.++||+|||++++++|||++++ ..++++|+.|++||++|+||.+|+.||..+..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence 599999999999999999999999999999999986 67899999999999999999999999986653
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.9e-22 Score=134.50 Aligned_cols=70 Identities=36% Similarity=0.635 Sum_probs=65.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+.|||.||||+..++..+|+++|+..++++|||+||+++. |.+.|+.+.+||+||+|+..|..||..+..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 6799999999999999999999999999999999999855 999999999999999999999999965543
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.86 E-value=6.6e-22 Score=146.10 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
+++||+||||+++|+..+||+|||+|++++|||+++. ..+.++|+.|++||+||+||.+|+.||.++..+
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~--~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG--NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 5799999999999999999999999999999999987 357889999999999999999999999877654
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.86 E-value=1.6e-21 Score=102.72 Aligned_cols=59 Identities=56% Similarity=0.932 Sum_probs=54.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChH
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQV 61 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (85)
+|||+||||+++++.++|+++|+++++.+|||+++...+.+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999999999998534788999999999999999985
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-21 Score=123.90 Aligned_cols=73 Identities=33% Similarity=0.555 Sum_probs=66.3
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD-NKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
+.+|+|+||||..+|+..+|++||+++++++|||+++. ....+.+.|+.|+.||.||+|..+|+.||..+.-.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 35799999999999999999999999999999999964 34789999999999999999999999999776644
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.84 E-value=9.7e-21 Score=98.13 Aligned_cols=55 Identities=56% Similarity=0.946 Sum_probs=51.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d 59 (85)
|||+||||+++++.++|+++|+++++++|||+.+.. +.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999998765 6788999999999999986
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.84 E-value=8.2e-21 Score=137.89 Aligned_cols=78 Identities=26% Similarity=0.482 Sum_probs=69.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCCCCCCCccc
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPYGGIQGLKW 82 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~ 82 (85)
.|||+||||+++|+.++||++||+|++++|||+++. +.+.++|+.|++||++|+||.+|..||..+........++.|
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e~gf~f 79 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDREDDFDF 79 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccccccccch
Confidence 689999999999999999999999999999999887 678889999999999999999999999877765554445544
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.82 E-value=4.9e-20 Score=125.26 Aligned_cols=66 Identities=47% Similarity=0.782 Sum_probs=61.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDN--KKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
.|||+||||.++|+..||.+|||+++.+||||...++ +..++.+|..|..|-+||+||.+|+.+|.
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 6999999999999999999999999999999998764 46789999999999999999999999983
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.2e-19 Score=114.63 Aligned_cols=68 Identities=47% Similarity=0.688 Sum_probs=63.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
..+||+||||+++|+..+|+++||++++++|||+++.....+.+.|..|++||++|+|+..|..||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 57999999999999999999999999999999999875335899999999999999999999999975
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.81 E-value=1.1e-19 Score=111.58 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=59.4
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 4 DYYKILGVDRNA--SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 4 d~y~iLgl~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|+||||+++| |.++||+|||++++++|||++++ .++|+.|++||++|+++.+|..||..+...
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 468999999999 99999999999999999999765 479999999999999999999999776544
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.80 E-value=2e-19 Score=112.50 Aligned_cols=65 Identities=17% Similarity=0.415 Sum_probs=57.8
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 3 ADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 3 ~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
+|||+||||++. ++..+|+++|+++++++|||+.... ...+.+.+..||+||++|+||.+|+.|+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHH
Confidence 589999999996 6789999999999999999997643 2346789999999999999999999997
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-19 Score=115.12 Aligned_cols=69 Identities=30% Similarity=0.489 Sum_probs=62.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
-|+|+||||+++++..|||+|||+|+.++||||.+.. ...++.|..|.+||+.|+|+..|..|...+.-
T Consensus 99 fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 99 FDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred CCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 4899999999999999999999999999999998764 56788999999999999999999999855543
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.78 E-value=6.5e-19 Score=109.74 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=57.5
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 3 ADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN--KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 3 ~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.|||+||||++. ++..+|+++|+++++++|||+..+. ...+.+.+..|++||++|+||.+|+.|.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~Yl 70 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYM 70 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 599999999997 6899999999999999999998652 2334567899999999999999999997
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.76 E-value=2.9e-18 Score=107.35 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=59.2
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 2 GADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 2 ~~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
++|||++|||++. .+..+|+++||++++++|||+.... +..+.+.+..||+||+||++|.+|+.|+
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~Yl 74 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYL 74 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 6899999999997 5689999999999999999998543 2456788999999999999999999998
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.75 E-value=4.3e-18 Score=106.90 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=57.7
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 2 GADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 2 ~~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.+|||+||||++. ++..+|+++|+++++++|||+.+.. +..+.+.+..||+||++|++|.+|..|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yl 76 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYL 76 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4799999999996 5789999999999999999998642 2235567899999999999999999998
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-17 Score=114.87 Aligned_cols=67 Identities=49% Similarity=0.705 Sum_probs=64.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
+|||+||||...++..+|+++||++++.+|||++..++.+++.+|++|.+||.+|+||.+|..||+.
T Consensus 373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 5899999999999999999999999999999999887889999999999999999999999999955
No 54
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.5e-17 Score=108.00 Aligned_cols=75 Identities=48% Similarity=0.740 Sum_probs=66.5
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPYG 75 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 75 (85)
|..|+|+||+|.+.|+..+|++||+.+++++|||+++.....+..+|++|.+||++|+|+.+|..||..+.....
T Consensus 1 ~~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 1 MGKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred CcccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 678999999999999999999999999999999998775445666899999999999999999999988764433
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-17 Score=114.77 Aligned_cols=66 Identities=33% Similarity=0.390 Sum_probs=62.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
..|+|.+|||+.+++.++||+.||+++...||||+-. +.|+|.|+.++.||++|+|+.+|..||..
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 4799999999999999999999999999999999986 89999999999999999999999999943
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=8.4e-18 Score=109.95 Aligned_cols=64 Identities=30% Similarity=0.531 Sum_probs=60.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
.|||+||||+++++..+|.+|||+|++++|||++++ +++.+.|+.|..||++|.|...|..||-
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~--~e~k~~F~~iAtayeilkd~e~rt~ydy 96 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD--PESKKLFVKIATAYEILKDNETRTQYDY 96 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC--chhhhhhhhhhcccccccchhhHHhHHH
Confidence 689999999999999999999999999999999988 6677999999999999999999999983
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.66 E-value=3.1e-16 Score=92.31 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=46.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
.++|+||||+++++.++|+++||++++++|||+..+ .+.|.+|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999654 467889999999995
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.65 E-value=3e-16 Score=104.04 Aligned_cols=57 Identities=32% Similarity=0.568 Sum_probs=51.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cHHHHHHHHHHHHHHHHHhcC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD------NKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~------~~~~a~~~f~~i~~Ay~~L~d 59 (85)
.++|+||||++++|.++||++||+|++++|||+... ..+.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999632 235688999999999999974
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.65 E-value=9.2e-16 Score=96.13 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=58.1
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 3 ADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 3 ~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.|||++|||++. .+...++++|+++.+.+|||+.... +..+.+....||+||.+|+||.+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 699999999996 7899999999999999999997542 3456778999999999999999999995
No 60
>PHA02624 large T antigen; Provisional
Probab=99.64 E-value=5.5e-16 Score=111.38 Aligned_cols=59 Identities=27% Similarity=0.463 Sum_probs=55.4
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhh
Q 047025 3 ADYYKILGVDRNA--SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQ 66 (85)
Q Consensus 3 ~d~y~iLgl~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 66 (85)
+++|+||||+++| +.++||+|||++++++|||++++ .++|+.|++||++|+++.+|..|
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 4689999999999 99999999999999999999755 57999999999999999999999
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.9e-15 Score=94.54 Aligned_cols=64 Identities=27% Similarity=0.494 Sum_probs=60.6
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhh
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKL 65 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 65 (85)
+.|+|+||.|.|..+.++|++.||+|+...|||+|+++.+.|..+|-.|.+||..|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999986553
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.49 E-value=7.2e-14 Score=97.51 Aligned_cols=69 Identities=33% Similarity=0.531 Sum_probs=62.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----cHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD----NKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
=|+|+||||+.+++..+||++||+|+.++||||.+. .+++.++.+..|++||..|+|...|+.|-..+.
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 489999999999999999999999999999999764 467889999999999999999999999975543
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.46 E-value=3.2e-13 Score=83.54 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 15 ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 15 a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
.+..+|+++|+++++++|||+.+.. +..+.+.+..||+||++|+||.+|+.|.-.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 4678999999999999999986442 345778999999999999999999999833
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.1e-11 Score=80.88 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=59.6
Q ss_pred CCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDR---NASCDDLKKAYEKMAAKWNPDKYPD-NKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~---~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
.|.|.+|||+. .++..+|.++.++.+.+||||+... -.....+.|+.|+.||+||+|+..|..||+...+
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ 116 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD 116 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence 57899999995 5788999999999999999999721 1145678999999999999999999999976553
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-10 Score=75.98 Aligned_cols=56 Identities=23% Similarity=0.593 Sum_probs=50.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH-HhcCh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYE-IVSDQ 60 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~-~L~d~ 60 (85)
+.||.||||..+++.++++.+|..|++++|||...+ +...+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~--~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE--EADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc--cccHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999887 677889999999999 77653
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.6e-09 Score=60.40 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=42.7
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcCh
Q 047025 7 KILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60 (85)
Q Consensus 7 ~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (85)
.||||+++++.+.||+++|+++...|||+..+ + -.-..||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS--P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGS--P---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCC--H---HHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999988 3 2334599999999754
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-08 Score=77.47 Aligned_cols=52 Identities=37% Similarity=0.595 Sum_probs=44.8
Q ss_pred CchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 047025 4 DYYKILGVDRN----ASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 4 d~y~iLgl~~~----a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d 59 (85)
+-|+||.|+-+ ...+.||++|++|+.+|||||+|+ -.+.|..+++||+.|+.
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHH
Confidence 45899999853 345889999999999999999976 45899999999999984
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.1e-07 Score=56.54 Aligned_cols=65 Identities=20% Similarity=0.398 Sum_probs=53.4
Q ss_pred CCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----cHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 3 ADYYKILGVDR--NASCDDLKKAYEKMAAKWNPDKYPD----NKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 3 ~d~y~iLgl~~--~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.+||.++|... ...+..+...|....+++|||+... ....+.+....+++||.+|.||..|+.|=
T Consensus 8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57999998665 3466667779999999999998522 33577888999999999999999999995
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.3e-05 Score=50.36 Aligned_cols=64 Identities=22% Similarity=0.394 Sum_probs=52.5
Q ss_pred CchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 4 DYYKILGVDRNA--SCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 4 d~y~iLgl~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
+++.++|+++.+ ..+.++..|+.+.+.+|||+.... ...+.+.+..++.||.+|.+|..|..|-
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~ 71 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYL 71 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 567777877754 566799999999999999997542 2346678999999999999999999985
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.83 E-value=3.1e-05 Score=55.13 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=36.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------HHHHHHHHHHHHHHHHHhc
Q 047025 10 GVDRNASCDDLKKAYEKMAAKWNPDKYPDN------KKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 10 gl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~------~~~a~~~f~~i~~Ay~~L~ 58 (85)
.+..-.+.++||++||+.++.+||||.+.. +-.+++.|-.+++||+...
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 344557899999999999999999998652 2345666667777776543
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.8e-05 Score=49.65 Aligned_cols=55 Identities=38% Similarity=0.549 Sum_probs=46.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------cHHHHHHHHHHHHHHHHHh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD------NKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~------~~~~a~~~f~~i~~Ay~~L 57 (85)
.+.|.+|++...++..+|+++|+++....|||+... --..+.+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999998532 1256788999999999754
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.48 E-value=0.00057 Score=41.08 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=35.1
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChH
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQV 61 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (85)
..||||++..+.++|.+.|.+|....+|++..+ . -.=..|..|.+.|....
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS--f---YLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGS--F---YLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---H---HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC--H---HHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999877 2 22234666777766544
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.28 E-value=0.023 Score=29.68 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.6
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHH
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAA 29 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~ 29 (85)
+-|++|||+++.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998877
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=94.78 E-value=0.1 Score=30.68 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC---CcHHHHHHHHHHHHHHHHHhcChH
Q 047025 13 RNASCDDLKKAYEKMAAKWNPDKYP---DNKKEAEAKLNRVCEAYEIVSDQV 61 (85)
Q Consensus 13 ~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (85)
+..+..+++.+.|.+.++.|||... ..+...++-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 3456788999999999999999753 334555667888888878777644
No 75
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=93.88 E-value=0.33 Score=31.21 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 12 DRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 12 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
+++|+.+||.+|+.++..+|--| ++.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd---------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD---------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHH
Confidence 57899999999999999988443 245556889999653
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.11 Score=35.60 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC---cHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 14 NASCDDLKKAYEKMAAKWNPDKYPD---NKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.++..+|+.+|+..+..+||++... ......+.++.|.+||.+|.+...|...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence 3567889999999999999998741 11356778999999999999865554544
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=1.3 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD 38 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~ 38 (85)
|=.|-=+++|+.|-++..||+.+-++.++++.-...|+
T Consensus 1 MCRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS 38 (88)
T COG5552 1 MCRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPS 38 (88)
T ss_pred CccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcc
Confidence 44566688999999999999999999988876655554
No 78
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.11 E-value=0.97 Score=27.18 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=29.8
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD 38 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~ 38 (85)
-.||+|++..+.++|.+.|..|.....+.+..+
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 469999999999999999999999998888765
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=87.91 E-value=3.1 Score=22.89 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=40.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--cHHHHHHHHHHHHHHHHHhcC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD--NKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~--~~~~a~~~f~~i~~Ay~~L~d 59 (85)
=.|--.+.|+.|-++.+||..+-.+.+++..--..|+ +.+.-.+....|..+-..|.+
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455567789999999999999999999987766665 223333445566666666654
No 80
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=77.36 E-value=1.6 Score=16.03 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhc
Q 047025 46 KLNRVCEAYEIVS 58 (85)
Q Consensus 46 ~f~~i~~Ay~~L~ 58 (85)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4566777777663
No 81
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.53 E-value=14 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.439 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 11 VDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 11 l~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
++..+..++|+.+++++.+.|||. ++...+.+|.+.|
T Consensus 397 ~Ps~~~mEqvk~k~~~m~r~YSP~----------kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 397 TPSDVLMEQVKQKFTAMQRRYSPS----------KKLHALLKACKLL 433 (651)
T ss_pred CCcHHHHHHHHHHHHHHHHhhChH----------HHHHHHHHHHHHH
Confidence 344566888999999999999994 4555555555544
No 82
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=67.92 E-value=4 Score=27.51 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhc
Q 047025 45 AKLNRVCEAYEIVS 58 (85)
Q Consensus 45 ~~f~~i~~Ay~~L~ 58 (85)
.+.+.||+||++|.
T Consensus 128 RRLkKVNEAFE~LK 141 (284)
T KOG3960|consen 128 RRLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 46888888888874
No 83
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=66.57 E-value=1.8 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.674 Sum_probs=19.6
Q ss_pred CCCchhhcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 047025 2 GADYYKILGVDRNASCDDL-KKAYEKMAAKWNPDK 35 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~I-k~ayr~l~~~~hPD~ 35 (85)
+.+++++||+++ +++ ......+....|||-
T Consensus 5 s~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 5 SDNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp -THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred eHHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 467889999965 555 455666778889974
No 84
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=66.20 E-value=15 Score=19.22 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQ 66 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 66 (85)
+..+...+.-||+.. ..+..+.|.+.|..|++..+...+
T Consensus 14 ~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK~~y~ 52 (72)
T cd01388 14 KRHRRKVLQEYPLKE------NRAISKILGDRWKALSNEEKQPYY 52 (72)
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555666788753 246788899999999977665443
No 85
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=62.80 E-value=12 Score=16.40 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 047025 16 SCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 16 ~~~~Ik~ayr~l~~~~hP 33 (85)
..++.+.+.|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 357788899999999984
No 86
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=58.73 E-value=25 Score=18.57 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.++..++.-+|+.. ..+..+.|.+.|..|++..+..
T Consensus 13 ~~~~r~~~~~~~p~~~------~~eisk~~g~~Wk~ls~eeK~~ 50 (77)
T cd01389 13 RQDKHAQLKTENPGLT------NNEISRIIGRMWRSESPEVKAY 50 (77)
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhhCCHHHHHH
Confidence 4456677777888763 2467788899999998655443
No 87
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=57.72 E-value=43 Score=23.18 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-------------------------cHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 13 RNASCDDLKKAYEKMAAKWNPDKYPD-------------------------NKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 13 ~~a~~~~Ik~ayr~l~~~~hPD~~~~-------------------------~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
++.+.++|-+|.+..-..+|||.+.. ....+.--.+-+|+.|+.+=|-..|.
T Consensus 46 ~~~~~~~lw~Ak~l~~Sa~HPDTge~i~~~fRmsa~vP~n~~i~~~mL~~~~s~~~~ifwQw~NQS~Na~vNy~Nrn 122 (308)
T PF03820_consen 46 PGLTDDELWKAKKLYDSAFHPDTGEKIPLPFRMSAFVPFNMPITGGMLTPYKSTPAVIFWQWVNQSYNAAVNYTNRN 122 (308)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCCccccccccccccccchHHHHHHhccCcchHHHHHHHHHHhHHHHHHhhhccC
Confidence 44589999999999999999997521 11344556778899999987655544
No 88
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=56.56 E-value=14 Score=25.43 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=36.5
Q ss_pred CchhhcCCCC-CCCHHHHHHHHHHHHHH-------hCCCCCCC--cHHHHHHHHHHHHHHHHHhcCh
Q 047025 4 DYYKILGVDR-NASCDDLKKAYEKMAAK-------WNPDKYPD--NKKEAEAKLNRVCEAYEIVSDQ 60 (85)
Q Consensus 4 d~y~iLgl~~-~a~~~~Ik~ayr~l~~~-------~hPD~~~~--~~~~a~~~f~~i~~Ay~~L~d~ 60 (85)
+.++-||++. ..+.+|+.+-.+.++.+ .++|.... ..-.-.+.++.+.+||+.|.+.
T Consensus 83 pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 83 PLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567789988 77888877766655443 33333211 0012367888899999998753
No 89
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=56.10 E-value=25 Score=21.04 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhcC
Q 047025 44 EAKLNRVCEAYEIVSD 59 (85)
Q Consensus 44 ~~~f~~i~~Ay~~L~d 59 (85)
.+.++.+..||-.|||
T Consensus 52 sEalh~lsHA~hAlSD 67 (120)
T PF12057_consen 52 SEALHYLSHAYHALSD 67 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555556666665
No 90
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=56.07 E-value=25 Score=17.56 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 24 YEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 24 yr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+...+.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 15 ~r~~~~~~~p~~~------~~~i~~~~~~~W~~ls~~eK~~ 49 (66)
T cd01390 15 QRPKLKKENPDAS------VTEVTKILGEKWKELSEEEKKK 49 (66)
T ss_pred HHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 3445566688743 3578888999999999655544
No 91
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=55.51 E-value=25 Score=17.39 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.++...+.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~~k~~ 49 (66)
T cd00084 12 SQEHRAEVKAENPGLS------VGEISKILGEMWKSLSEEEKKK 49 (66)
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 3445566677788743 3467888999999998755443
No 92
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=54.69 E-value=33 Score=18.47 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
+-|.++.+.||.+.. ...+..-..|.+.|+.+
T Consensus 35 k~Fnkl~~lyHk~~R----e~fE~e~ee~~elYD~~ 66 (69)
T PF11126_consen 35 KMFNKLLKLYHKQER----EEFEAENEEVVELYDAV 66 (69)
T ss_pred HHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHH
Confidence 457788888887532 44556666777777765
No 93
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=54.47 E-value=24 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=37.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
.++|+.|||++..=..+|-+.-...+.+.-|-...-+.+.-......+..+...|.
T Consensus 250 ~~Fy~alGld~~~yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 250 SDFYAAIGLDARQFDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred HHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999998765555556667778888887654333555555555555555553
No 94
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=53.45 E-value=19 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
+..|+.+.+-.|+.... |..++|-+-|+.|++.+||-.+|
T Consensus 75 q~~RRkma~qnP~mHNS------EISK~LG~~WK~Lse~EKrPFi~ 114 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKMHNS------EISKRLGAEWKLLSEEEKRPFVD 114 (331)
T ss_pred HHHHHHHHHhCcchhhH------HHHHHHHHHHhhcCHhhhccHHH
Confidence 45566666677776544 79999999999999988887655
No 95
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=50.93 E-value=36 Score=23.68 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=35.5
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
.++|+.|||++..=..+|-+.-.+.+.+.-|-...-+.+.-......+..+...|
T Consensus 234 ~~Fy~alGld~~~yD~~Vi~~Tn~~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 288 (323)
T cd01047 234 PDFYEALGLDTTEFDMHVIRETNETAARVFPAVLDVDNPEFRRGLDRLVDLNLKL 288 (323)
T ss_pred HHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 4789999999876555566666777888888765433344444444444444444
No 96
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=49.03 E-value=34 Score=24.12 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
.++|+.|||++..=..+|-+.-.+.+.+.-|-...-+.+.-......+..+...|
T Consensus 254 ~~Fy~alGlD~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 308 (355)
T PRK13654 254 PDFYEALGLDAREYDQEVIRKTNETSARVFPVVLDVDDPRFYARLERCVENNEKL 308 (355)
T ss_pred hHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCChHHHHHHHHHHHHHHHH
Confidence 4789999999876555666666777888888765433344444444444444444
No 97
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=47.84 E-value=21 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKY 36 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~ 36 (85)
..+|.||.++...|..+|-+.--.-+++-+||-.
T Consensus 11 dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 11 DQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 4689999999988877755544444455577654
No 98
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=45.96 E-value=41 Score=23.57 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
.++|+.|||++..=..+|-+.-.+.+.+.-|-...-+.+.-......+..+...|
T Consensus 244 ~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l 298 (337)
T TIGR02029 244 PGFYEALGLDATDFDLQVFRNTNETSGRIFPMTLNTEHPRFRRLLDRMAGYSEKI 298 (337)
T ss_pred HHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999876555555566777788888765433344444444444444444
No 99
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=45.45 E-value=20 Score=20.52 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=16.7
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
+|-|.+.|+..+|++|...+
T Consensus 25 vF~V~~~AtK~~IK~AvE~l 44 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEEL 44 (94)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788889999999988877
No 100
>COG2879 Uncharacterized small protein [Function unknown]
Probab=43.55 E-value=52 Score=17.47 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCCCCC
Q 047025 23 AYEKMAAKWNPDKYPD 38 (85)
Q Consensus 23 ayr~l~~~~hPD~~~~ 38 (85)
.|-+-+++.|||+.+-
T Consensus 27 nYVehmr~~hPd~p~m 42 (65)
T COG2879 27 NYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHhCcCCCcc
Confidence 4666688999999765
No 101
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=43.04 E-value=45 Score=16.63 Aligned_cols=24 Identities=13% Similarity=0.355 Sum_probs=19.0
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHH
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAA 29 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~ 29 (85)
|++=|+.|..+.+|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456688999999999998876543
No 102
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=42.27 E-value=20 Score=17.70 Aligned_cols=21 Identities=5% Similarity=0.308 Sum_probs=17.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
|=+|+++.+.++|++.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g 23 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFG 23 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTS
T ss_pred EcCCCCcCCHHHHHHHHHHhh
Confidence 447899999999999887753
No 103
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=42.09 E-value=45 Score=20.81 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHhh
Q 047025 41 KEAEAKLNRVCEAYEIVSDQVRCKL 65 (85)
Q Consensus 41 ~~a~~~f~~i~~Ay~~L~d~~~R~~ 65 (85)
++.......|.++.++|.||.++..
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 5667788899999999999988763
No 104
>CHL00030 rpl23 ribosomal protein L23
Probab=41.96 E-value=25 Score=19.97 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
++-|++.|+..+||+|...+
T Consensus 23 ~F~V~~~anK~eIK~avE~l 42 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELF 42 (93)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999998777
No 105
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=39.76 E-value=59 Score=22.96 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYE 55 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~ 55 (85)
.++|+.|||++..=..+|-+.-.+.+.+.-|-...-+.+.-......+..+..
T Consensus 250 ~~Fy~alGld~~~yD~~Vi~~Tne~s~rvFP~~Ldvd~P~F~~~L~~~~~~n~ 302 (357)
T PLN02508 250 TAFYEGIGLNTKQFNMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQ 302 (357)
T ss_pred HHHHHHhCCCHHHhhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHH
Confidence 47899999998665555555566777888887643332333333333333333
No 106
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=39.67 E-value=61 Score=19.15 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=31.5
Q ss_pred CchhhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh--cChHHHhhh
Q 047025 4 DYYKILGVDRNA-----SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV--SDQVRCKLQ 66 (85)
Q Consensus 4 d~y~iLgl~~~a-----~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L--~d~~~R~~Y 66 (85)
+|++.|||+-+. ..--|=+.|.+.......... ++.......=..+.+||+.. |+|..-+.+
T Consensus 20 dff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~~~-~e~~~~~~yr~aL~~AY~dF~~Stp~~ekvF 88 (113)
T PRK00810 20 EFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFAGL-PEAEARARCRAVLERAYADFVASSPLDQRVF 88 (113)
T ss_pred HHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHHHHHccCCHhHHHHH
Confidence 577788887543 333455566655544331111 11122234445667788754 555554444
No 107
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=39.20 E-value=17 Score=19.70 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=20.8
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~hPD 34 (85)
|+.|..+.+.++||+.|.++.....|-
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~~ 32 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSAS 32 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCHH
Confidence 345677889999999999987766663
No 108
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=39.03 E-value=40 Score=17.01 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
+..+...+.-||+.. ..+..+.|.+.|.-|++..+.
T Consensus 13 ~~~~~~~k~~~p~~~------~~~i~~~~~~~W~~l~~~eK~ 48 (69)
T PF00505_consen 13 KEKRAKLKEENPDLS------NKEISKILAQMWKNLSEEEKA 48 (69)
T ss_dssp HHHHHHHHHHSTTST------HHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHhcccc------cccchhhHHHHHhcCCHHHHH
Confidence 344555666788765 346778888888888755443
No 109
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.97 E-value=81 Score=21.26 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcCh
Q 047025 19 DLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60 (85)
Q Consensus 19 ~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (85)
.+...+.+++..+.| ..|..|.+||..|++.
T Consensus 183 ~ld~~l~~~~~~Fd~-----------~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 183 QLDSDLSKVCQDFDP-----------DKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHhhh
Confidence 345555556655555 5777889999888864
No 110
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=37.98 E-value=32 Score=18.79 Aligned_cols=20 Identities=45% Similarity=0.601 Sum_probs=17.0
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
++-|++.++..+||++...+
T Consensus 18 ~F~V~~~anK~eIK~avE~l 37 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKL 37 (77)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688999999999998877
No 111
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=37.77 E-value=84 Score=18.25 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCchhhcCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh--cChHHHhhh
Q 047025 3 ADYYKILGVDRNA-----SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV--SDQVRCKLQ 66 (85)
Q Consensus 3 ~d~y~iLgl~~~a-----~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L--~d~~~R~~Y 66 (85)
.+|++.|||+-+. ..--|=+.|.+.....++....++.+.....=..+.+||+.. |+|...+.+
T Consensus 15 EdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvF 85 (105)
T PF03206_consen 15 EDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVTSTPLEEKVF 85 (105)
T ss_pred HHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhhHHH
Confidence 3678889998643 344477788888777766432332233444455678889864 555555443
No 112
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.55 E-value=68 Score=19.38 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhh
Q 047025 17 CDDLKKAYEKMAAKWN-PDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQ 66 (85)
Q Consensus 17 ~~~Ik~ayr~l~~~~h-PD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 66 (85)
..+++++|+.+.+..+ |++. ...+.-+.||=...|-..-...
T Consensus 50 Da~LN~AY~~ll~~l~~~~~~--------~aL~kaQRAWi~fRDadC~~~~ 92 (127)
T COG3755 50 DAELNKAYKALLKRLQDSPRT--------KALQKAQRAWIAFRDADCALIK 92 (127)
T ss_pred HHHHHHHHHHHHHHhccChHH--------HHHHHHHHHHHHHhhHhHHHHh
Confidence 5679999999988877 5431 1577777888887776554443
No 113
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=35.88 E-value=35 Score=19.17 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
+|-|++.++..|||++...+
T Consensus 24 ~F~V~~~a~K~eIK~aie~l 43 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKL 43 (92)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 45688899999999988777
No 114
>smart00398 HMG high mobility group.
Probab=35.86 E-value=61 Score=16.12 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 24 YEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 24 yr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.....-||+.. ..+..+.|.+.|..|++..+..
T Consensus 16 ~r~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~ek~~ 50 (70)
T smart00398 16 NRAKIKAENPDLS------NAEISKKLGERWKLLSEEEKAP 50 (70)
T ss_pred HHHHHHHHCcCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555678753 3467778889999998655443
No 115
>PRK10613 hypothetical protein; Provisional
Probab=35.83 E-value=15 Score=19.99 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.1
Q ss_pred CHHHHHHHHHH
Q 047025 16 SCDDLKKAYEK 26 (85)
Q Consensus 16 ~~~~Ik~ayr~ 26 (85)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 45678888874
No 116
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=35.50 E-value=15 Score=19.96 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=8.1
Q ss_pred CHHHHHHHHHH
Q 047025 16 SCDDLKKAYEK 26 (85)
Q Consensus 16 ~~~~Ik~ayr~ 26 (85)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 45678888874
No 117
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=35.34 E-value=94 Score=18.08 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=30.1
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHHHH
Q 047025 7 KILGVDRNASCDDLKKAYEKMAAKWN-PDKYPDNKKEAEAKLNRVCEAY 54 (85)
Q Consensus 7 ~iLgl~~~a~~~~Ik~ayr~l~~~~h-PD~~~~~~~~a~~~f~~i~~Ay 54 (85)
.+|.|++.++.+.+|.+--++...+. |......-+.-++....|+.+.
T Consensus 25 ~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G~pAF~s~~QQ~~mlq~~l 73 (120)
T PRK15321 25 RLLALPESASSETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQNML 73 (120)
T ss_pred HHHhCCcccCcHHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHHH
Confidence 57899999999999988777777764 4433322233344444444443
No 118
>smart00427 H2B Histone H2B.
Probab=34.98 E-value=88 Score=17.68 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=19.6
Q ss_pred HHHHHHhCCCCCCCcHHHHHHH-HHHHHHHHHHhcChHHH
Q 047025 25 EKMAAKWNPDKYPDNKKEAEAK-LNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 25 r~l~~~~hPD~~~~~~~~a~~~-f~~i~~Ay~~L~d~~~R 63 (85)
.+..++.|||..-. ..+... -..++..++.+.....|
T Consensus 8 ~kvLKqVhpd~giS--~kam~imnSfvnDiferIa~EAs~ 45 (89)
T smart00427 8 YKVLKQVHPDTGIS--SKAMSIMNSFVNDIFERIAAEASK 45 (89)
T ss_pred HHHHHHhCCCcccc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999765 223222 22344445544444333
No 119
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=34.78 E-value=21 Score=18.11 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=7.3
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEK 26 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~ 26 (85)
|||++.+-.+-|+++-++
T Consensus 33 lgis~st~~~~LRrae~k 50 (53)
T PF04967_consen 33 LGISKSTVSEHLRRAERK 50 (53)
T ss_pred hCCCHHHHHHHHHHHHHH
Confidence 344443333334444443
No 120
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=34.54 E-value=46 Score=23.58 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 20 LKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 20 Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
+.+.|-.| ++..||-.-+ |++|-++|. -.+|++||-
T Consensus 76 LTkKFv~L-lq~s~dGvld-----------Ln~aA~~L~-VqKRRIYDI 111 (354)
T KOG2577|consen 76 LTKKFVDL-LQESPDGVLD-----------LNKAAEVLN-VQKRRIYDI 111 (354)
T ss_pred HHHHHHHH-HHhCCCceee-----------HHHHHHHhc-cccceeeeh
Confidence 55555555 3345554444 788888887 459999993
No 121
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=33.70 E-value=79 Score=18.27 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=21.6
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 31 WNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 31 ~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
.||.-.+.......+.++.|.+|-+.|.
T Consensus 68 NHPsG~~~PS~~D~~~T~~l~~~~~~l~ 95 (113)
T cd08071 68 NHPSGDPTPSREDIELTKRLKEAGELLG 95 (113)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 5998776555777788889999988874
No 122
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=33.62 E-value=58 Score=22.79 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 047025 10 GVDRNASCDDLKKAYEKMAAKWNPDKY 36 (85)
Q Consensus 10 gl~~~a~~~~Ik~ayr~l~~~~hPD~~ 36 (85)
.++++.+.+++=+|.+..-..+|||.+
T Consensus 61 ~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 61 KVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred CcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 466677899999999999999999986
No 123
>smart00360 RRM RNA recognition motif.
Probab=32.97 E-value=54 Score=15.50 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=16.2
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|-||+...+.++|++.+...
T Consensus 1 i~~l~~~~~~~~l~~~f~~~ 20 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF 20 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh
Confidence 34788889999999988765
No 124
>smart00362 RRM_2 RNA recognition motif.
Probab=31.89 E-value=56 Score=15.55 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|-||+...+.++|++.+.+.
T Consensus 4 i~~l~~~~~~~~l~~~~~~~ 23 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKF 23 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhc
Confidence 55888999999999888764
No 125
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=31.30 E-value=32 Score=21.86 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=27.9
Q ss_pred hcCCCCCCCHHHHHHHHH---HHHHHhCCCCC---------------CCcHHHHHHHHHHHHHHHHHhcC
Q 047025 8 ILGVDRNASCDDLKKAYE---KMAAKWNPDKY---------------PDNKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr---~l~~~~hPD~~---------------~~~~~~a~~~f~~i~~Ay~~L~d 59 (85)
+|.+-++.+.++++++.. +..+.-||+.. +.......+.=..+.++++.|..
T Consensus 64 ~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~ 133 (178)
T PF14606_consen 64 VLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRK 133 (178)
T ss_dssp EEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466666666554 44566799973 11123444555667778888843
No 126
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=30.83 E-value=10 Score=24.17 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 17 CDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 17 ~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
-..+|+.||.+.+..-||-.+...++++-.|..+.-.+++|.
T Consensus 91 CSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~ 132 (191)
T KOG3354|consen 91 CSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVIL 132 (191)
T ss_pred hHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHH
Confidence 356899999998876665443322333334444444455554
No 127
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=30.70 E-value=1e+02 Score=17.20 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 10 GVDRNA-SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 10 gl~~~a-~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
|++|+. ...+|-+.+..++..+++. ..+.+..|.+.| +.||.-+..|+
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~~--------~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTGG--------DPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-----------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHH--HcCHHHHhhcc
Confidence 445543 3344666666666666651 135666677777 67777777776
No 128
>smart00335 ANX Annexin repeats.
Probab=29.63 E-value=28 Score=16.84 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=13.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
||.-...+....|+.+|+++.
T Consensus 10 il~~rs~~~~~~i~~~Y~~~~ 30 (53)
T smart00335 10 ILASRSNAQLQAIKQAYKKRY 30 (53)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 444445556677888887663
No 129
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=29.48 E-value=61 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcChHHHhhhc
Q 047025 48 NRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 48 ~~i~~Ay~~L~d~~~R~~Yd 67 (85)
..+.+.+.+|+||.++++..
T Consensus 4 ~~~~~~fkaLadptRl~IL~ 23 (117)
T PRK10141 4 LLPLQLFKILSDETRLGIVL 23 (117)
T ss_pred hHHHHHHHHhCCHHHHHHHH
Confidence 45678899999999998875
No 130
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=28.60 E-value=93 Score=16.84 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=5.2
Q ss_pred HHHHHHHhCC
Q 047025 24 YEKMAAKWNP 33 (85)
Q Consensus 24 yr~l~~~~hP 33 (85)
+..++..+..
T Consensus 60 W~~va~~lg~ 69 (92)
T PF01388_consen 60 WREVARKLGF 69 (92)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHhCC
Confidence 5555555533
No 131
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.57 E-value=56 Score=18.16 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=16.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
.|-|++.|+..+|++|...+
T Consensus 25 ~F~V~~~anK~eIK~AvE~l 44 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEEL 44 (84)
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35678899999999998877
No 132
>PF14893 PNMA: PNMA
Probab=28.31 E-value=55 Score=22.92 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=20.4
Q ss_pred CCCCchh---hcCCCCCCCHHHHHHHHHHH
Q 047025 1 MGADYYK---ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 1 ~~~d~y~---iLgl~~~a~~~~Ik~ayr~l 27 (85)
|+.|.++ |+||+.+++.++|..+-+..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHh
Confidence 4555554 67999999999999876653
No 133
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.59 E-value=57 Score=18.19 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=16.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
.+.|++.++..+|+++...+-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 466888999999998877663
No 134
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=27.58 E-value=58 Score=16.30 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=12.7
Q ss_pred HHHHHhcChHHHhhhc
Q 047025 52 EAYEIVSDQVRCKLQK 67 (85)
Q Consensus 52 ~Ay~~L~d~~~R~~Yd 67 (85)
+...+|+||.++.++.
T Consensus 2 ~i~~aL~~p~R~~Il~ 17 (61)
T PF12840_consen 2 EIFKALSDPTRLRILR 17 (61)
T ss_dssp HHHHHHTSHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 4567899999888775
No 135
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=27.35 E-value=62 Score=18.25 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD 34 (85)
+++-|.||=|....+.++|++-.++.--++.-|
T Consensus 46 gTtSy~v~FLd~~~~ieeIk~eL~e~ga~lN~d 78 (87)
T PF05370_consen 46 GTTSYQVFFLDSYNSIEEIKEELKEAGAKLNHD 78 (87)
T ss_dssp TTT-EEEEE-S---S-HHHHHHHHHHHHSSS-S
T ss_pred CCceEEEEEEcCCCCHHHHHHHHHHcCceeccc
Confidence 567788888999999999999988885554443
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=27.27 E-value=84 Score=17.82 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=18.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhC
Q 047025 7 KILGVDRNASCDDLKKAYEKMAAKWN 32 (85)
Q Consensus 7 ~iLgl~~~a~~~~Ik~ayr~l~~~~h 32 (85)
-|.+||.+.+...|+...++|+-.+=
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCG 31 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCG 31 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccC
Confidence 36788989999999999999987653
No 137
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=26.92 E-value=77 Score=15.11 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=16.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|-||+...+.++|+.-+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 45889999999999988775
No 138
>PLN00158 histone H2B; Provisional
Probab=26.05 E-value=1.5e+02 Score=17.61 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHHHhCCCCCCCcHHHHHHH-HHHHHHHHHHhcChHHH
Q 047025 25 EKMAAKWNPDKYPDNKKEAEAK-LNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 25 r~l~~~~hPD~~~~~~~~a~~~-f~~i~~Ay~~L~d~~~R 63 (85)
.+..++.|||..-. ..+... -..|+..++-+.....|
T Consensus 34 ~kVLKQVhPd~gIS--~kaM~ImnSfvnDiferIA~EAs~ 71 (116)
T PLN00158 34 YKVLKQVHPDTGIS--SKAMSIMNSFINDIFEKIATEAGK 71 (116)
T ss_pred HHHHHHhCCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999865 222222 22345555555444433
No 139
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=25.96 E-value=1.7e+02 Score=18.22 Aligned_cols=44 Identities=25% Similarity=0.121 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHH-----------HHHhCCCCCCCc---------------HHHHHHHHHHHHHHHHH
Q 047025 13 RNASCDDLKKAYEKM-----------AAKWNPDKYPDN---------------KKEAEAKLNRVCEAYEI 56 (85)
Q Consensus 13 ~~a~~~~Ik~ayr~l-----------~~~~hPD~~~~~---------------~~~a~~~f~~i~~Ay~~ 56 (85)
|-++.+++..+.... +...||+-.... .+...+.|..+|.+|+-
T Consensus 41 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg~~~~~~~S~~EQ~gl~~l~~~~~~~l~~lN~~Y~~ 110 (166)
T PRK13798 41 PFADHDALLAAADEALAGLSEADIDEALAGHPRIGERPASKASAREQAGVADADEAVMAALAAGNRAYEE 110 (166)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCcccCccccccCHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 344555555555433 566899976310 23456678888888863
No 140
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=25.62 E-value=93 Score=14.96 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 047025 42 EAEAKLNRVCEAYEIV 57 (85)
Q Consensus 42 ~a~~~f~~i~~Ay~~L 57 (85)
..++.-+.++.|+++|
T Consensus 25 ~eeEt~qkL~~AF~iL 40 (41)
T PF11590_consen 25 EEEETRQKLRRAFDIL 40 (41)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhh
Confidence 4456778888888887
No 141
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=25.36 E-value=1.1e+02 Score=15.78 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=17.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHh
Q 047025 9 LGVDRNASCDDLKKAYEKMAAKW 31 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l~~~~ 31 (85)
+.++...+..++++.++.++..+
T Consensus 51 v~~p~~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 51 LALPAGTDLDALREELEELCDDL 73 (81)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 34565667889999998888764
No 142
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=25.31 E-value=49 Score=19.86 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=13.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCC
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~hP 33 (85)
+||++++.-...+.++-+++-..+-|
T Consensus 137 ~lgis~~tV~~~l~Rar~~Lr~~l~~ 162 (164)
T PRK12547 137 ICGCAVGTIKSRVSRARNRLQELLKV 162 (164)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 45565555444555555555444433
No 143
>PF09938 DUF2170: Uncharacterized protein conserved in bacteria (DUF2170); InterPro: IPR019231 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.80 E-value=83 Score=19.28 Aligned_cols=26 Identities=31% Similarity=0.634 Sum_probs=18.3
Q ss_pred CCCchhhcC-CCCCCCHHHHHHHHHHH
Q 047025 2 GADYYKILG-VDRNASCDDLKKAYEKM 27 (85)
Q Consensus 2 ~~d~y~iLg-l~~~a~~~~Ik~ayr~l 27 (85)
+.+||.++| |+...+.++|-.--..|
T Consensus 98 g~~~Yv~FGALS~~S~l~~I~~Ei~tL 124 (140)
T PF09938_consen 98 GEDYYVAFGALSAQSSLEDIVIEIETL 124 (140)
T ss_pred CcEEEEEeeeecccCCHHHHHHHHHHH
Confidence 578999998 66677777766544444
No 144
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=24.48 E-value=98 Score=17.02 Aligned_cols=23 Identities=35% Similarity=0.294 Sum_probs=17.7
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAK 30 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~ 30 (85)
.|.++.++|..+||.---+.++.
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~A~~ 25 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARK 25 (78)
T ss_pred eEEccccccHHHHHHHHHHHHHh
Confidence 46788999999999876665553
No 145
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=24.32 E-value=52 Score=16.43 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=12.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 047025 10 GVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 10 gl~~~a~~~~Ik~ayr~l 27 (85)
||+++++.++|+..+...
T Consensus 5 nlp~~~~~~~l~~~f~~~ 22 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRF 22 (70)
T ss_dssp SSTTT--HHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 788899999998876654
No 146
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=23.61 E-value=64 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhCCC
Q 047025 18 DDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 18 ~~Ik~ayr~l~~~~hPD 34 (85)
.-|+.+||++.-..||-
T Consensus 12 ~vI~AaYrQVf~~~~~~ 28 (131)
T PF00427_consen 12 AVIRAAYRQVFGNDHPM 28 (131)
T ss_dssp HHHHHHHHHHHSSSSSH
T ss_pred HHHHHHHHHHhcCccch
Confidence 34899999998777774
No 147
>PRK10455 periplasmic protein; Reviewed
Probab=23.46 E-value=1.5e+02 Score=18.41 Aligned_cols=21 Identities=10% Similarity=0.204 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhcChHHHhhhc
Q 047025 46 KLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 46 ~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
..+.-++.|.+|+ |+.|..|+
T Consensus 119 ~~~~~~qiy~vLT-PEQr~q~~ 139 (161)
T PRK10455 119 HMETQNKIYNVLT-PEQKKQFN 139 (161)
T ss_pred HHHHHHHHHHhCC-HHHHHHHH
Confidence 4444566788777 77777776
No 148
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=23.39 E-value=1.9e+02 Score=17.84 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHH-----------HHHhCCCCC
Q 047025 13 RNASCDDLKKAYEKM-----------AAKWNPDKY 36 (85)
Q Consensus 13 ~~a~~~~Ik~ayr~l-----------~~~~hPD~~ 36 (85)
|-++.+++..+.... ++..|||-.
T Consensus 31 Pf~s~~~L~~a~~~~~~~~~~~~~~~~l~~HP~lg 65 (158)
T TIGR03180 31 PFASAEALLAAADQAWQNLSEQDLFEALAGHPRIG 65 (158)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCccc
Confidence 344555555555433 566799976
No 149
>PTZ00463 histone H2B; Provisional
Probab=23.37 E-value=1.8e+02 Score=17.38 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=20.6
Q ss_pred HHHHHHhCCCCCCCcHHHHHHH-HHHHHHHHHHhcChHHH
Q 047025 25 EKMAAKWNPDKYPDNKKEAEAK-LNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 25 r~l~~~~hPD~~~~~~~~a~~~-f~~i~~Ay~~L~d~~~R 63 (85)
.+..++.|||..-+ ..+... -..|+..++-+.....+
T Consensus 35 ~KVLKqVhPd~gIS--~kaM~ImnSfvnDifErIA~EAs~ 72 (117)
T PTZ00463 35 FKVLKQVHPDTGIS--RKSMNIMNSFLVDTFEKIATEASR 72 (117)
T ss_pred HHHHHhhCCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999866 333222 22345555555444443
No 150
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.26 E-value=36 Score=18.53 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=18.1
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHH
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l 27 (85)
.+|.++.-....+.+|||+.|..+
T Consensus 8 ~W~~~~~~a~w~~~~elk~~f~~a 31 (76)
T PF09907_consen 8 AWYREVKKADWKNPAELKQQFPSA 31 (76)
T ss_pred HHHHHHHHccCCCHHHHHHHCcch
Confidence 356677777778888999888665
No 151
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=23.16 E-value=17 Score=17.64 Aligned_cols=11 Identities=55% Similarity=0.643 Sum_probs=8.8
Q ss_pred HHHHHHhcChH
Q 047025 51 CEAYEIVSDQV 61 (85)
Q Consensus 51 ~~Ay~~L~d~~ 61 (85)
++||-+|||..
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 68999999853
No 152
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=22.56 E-value=2.9e+02 Score=19.53 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQ 66 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Y 66 (85)
.+|..-+...+||+..+. .+.+..+-.+...|.-|..|..+
T Consensus 44 aeA~~cI~eLc~~~~~pT-----~~~l~~iF~~LKeLAspg~Kd~F 84 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPT-----RERLEDIFFELKELASPGYKDRF 84 (337)
T ss_dssp HHHHHHHHHHHSSSS--------HHHHHHHHHHHHHHC-HHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcCchhhhce
Confidence 356777788899998766 24445555566678888888763
No 153
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=22.39 E-value=1.1e+02 Score=16.12 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCCCCCC
Q 047025 22 KAYEKMAAKWNPDKYPD 38 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~ 38 (85)
..|-.-....|||..+-
T Consensus 26 e~Yv~H~~~~HP~~p~m 42 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPM 42 (65)
T ss_pred HHHHHHHHHHCcCCCCC
Confidence 45666678899999654
No 154
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=22.32 E-value=1.7e+02 Score=16.82 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=25.3
Q ss_pred chhhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 047025 5 YYKILGVDRNASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 5 ~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
-...+++.++.+.++++++.++......++.
T Consensus 29 ~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~ 59 (116)
T TIGR00824 29 NVGAVPFVPGENAETLQEKYNAALADLDTEE 59 (116)
T ss_pred CeEEEEcCCCcCHHHHHHHHHHHHHhcCCCC
Confidence 3567788888999999999999998886543
No 155
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=22.18 E-value=56 Score=20.14 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=13.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 047025 7 KILGVDRNASCDDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 7 ~iLgl~~~a~~~~Ik~ayr~l~~~~hPD 34 (85)
++||+++++-..-+.++-++|-+-..||
T Consensus 154 ~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 154 AVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 3566655544444555555554434443
No 156
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=21.97 E-value=56 Score=17.25 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhc--Ch--HHHhhhc
Q 047025 16 SCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVS--DQ--VRCKLQK 67 (85)
Q Consensus 16 ~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~--d~--~~R~~Yd 67 (85)
+...+.+.+-.+... +|+..-+ +.++-+.|. +- .+|+.||
T Consensus 5 sL~~lt~~fi~~~~~-~~~~~i~-----------l~~ia~~l~~~~~k~~~RRlYD 48 (71)
T PF02319_consen 5 SLKLLTQRFIQLFES-SPDKSIS-----------LNEIADKLISENVKTQRRRLYD 48 (71)
T ss_dssp HHHHHHHHHHHHHHH-CCCTEEE-----------HHHHHHHCHHHCCHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCccc-----------HHHHHHHHcccccccccchhhH
Confidence 444555555555554 4443323 444444441 33 7888888
No 157
>PRK15372 pathogenicity island 2 effector protein SseI; Provisional
Probab=21.78 E-value=1.6e+02 Score=20.15 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=5.2
Q ss_pred HHHHhCCCCC
Q 047025 27 MAAKWNPDKY 36 (85)
Q Consensus 27 l~~~~hPD~~ 36 (85)
+...+||..+
T Consensus 23 I~~LcHP~~g 32 (292)
T PRK15372 23 IWTICHPPAG 32 (292)
T ss_pred HHHHhCCCCC
Confidence 3445666644
No 158
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=21.74 E-value=1.3e+02 Score=15.34 Aligned_cols=30 Identities=17% Similarity=0.437 Sum_probs=17.8
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNPDKY 36 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~ 36 (85)
-||+||+++.-. ++=|-.|-+- ++-||+..
T Consensus 12 AFY~vl~~~nLt--eeQrn~yI~~-lKddPs~s 41 (54)
T PF02216_consen 12 AFYEVLHMPNLT--EEQRNGYIQS-LKDDPSRS 41 (54)
T ss_dssp HHHHHHCSTTS---HHHHHHHHHH-HHH-GCCH
T ss_pred HHHHHHcCCCcC--HHHHHhHHHH-HhhChHHH
Confidence 379999987632 3335555544 56788764
No 159
>PLN02560 enoyl-CoA reductase
Probab=21.32 E-value=65 Score=22.22 Aligned_cols=28 Identities=39% Similarity=0.479 Sum_probs=20.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
.|.+++++|.++||++..+....+.|++
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~R 44 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSR 44 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhh
Confidence 4788999999999998876644444443
No 160
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=1.8e+02 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCchhhcCCCC---------CCCHHHHHHHHHH---HHHHhCCCCCCC--cHHHHHHHHHHHHHHHHHhc
Q 047025 2 GADYYKILGVDR---------NASCDDLKKAYEK---MAAKWNPDKYPD--NKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 2 ~~d~y~iLgl~~---------~a~~~~Ik~ayr~---l~~~~hPD~~~~--~~~~a~~~f~~i~~Ay~~L~ 58 (85)
...+|+||-..+ +.+...|...|+. ..+.++||.+.. ..+.....|..-...|.|+.
T Consensus 623 kLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVit 693 (843)
T KOG0906|consen 623 KLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVIT 693 (843)
T ss_pred cceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeee
Confidence 346889987664 4578889999976 467899998532 23667778888888888853
No 161
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=20.95 E-value=1.4e+02 Score=15.28 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 047025 11 VDRNASCDDLKKAYEKMAAK 30 (85)
Q Consensus 11 l~~~a~~~~Ik~ayr~l~~~ 30 (85)
.++..+.++|-+.|++..++
T Consensus 32 y~~~~tK~~Lvk~fkKql~k 51 (54)
T PF09124_consen 32 YNEKDTKAQLVKIFKKQLKK 51 (54)
T ss_dssp --TTS-HHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHH
Confidence 34677889999999887654
No 162
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=20.79 E-value=2.3e+02 Score=18.90 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=15.6
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHH
Q 047025 7 KILGVDRNASCDDLKKAYEKMAAK 30 (85)
Q Consensus 7 ~iLgl~~~a~~~~Ik~ayr~l~~~ 30 (85)
++||++.++-..-+.++-++|...
T Consensus 139 ~~lg~s~~tVk~~l~RAr~~Lr~~ 162 (293)
T PRK09636 139 STLGRSPAACRQLASRARKHVRAA 162 (293)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhh
Confidence 467777776666666666666543
No 163
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.75 E-value=89 Score=19.31 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=14.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
+|-|+..|+..+|++|..++
T Consensus 86 vF~Vd~kAnK~qIK~AVEkl 105 (145)
T PTZ00191 86 VFIVDQRANKTQIKKAVEKL 105 (145)
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 34566777888888877766
No 164
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=20.69 E-value=1.5e+02 Score=15.41 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChH
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQV 61 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (85)
..|+.....|.|+ +.+.+...++.+..+.|+...
T Consensus 17 ~~Y~~~l~~y~~~------~~~~~A~~~lK~C~d~ls~e~ 50 (67)
T PF01099_consen 17 EEYKESLQKYNPP------PEAVEAKLELKQCVDKLSNET 50 (67)
T ss_dssp HHHHHHHHCC---------HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhcCCC------HHHHHHHHHHHHHHHhCCHHH
Confidence 4577777777775 667777777888777777543
No 165
>PF01929 Ribosomal_L14e: Ribosomal protein L14; InterPro: IPR002784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry includes the eukaryotic ribosomal protein L14, which binds to the 60S ribosomal subunit, and archaebacterial ribosomal protein L14E, which binds to the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_N 3O5H_N 3O58_N 2KDS_A 2JOY_A 4A1B_F 4A19_F 4A18_F 4A1D_F 3IZR_N.
Probab=20.43 E-value=1.4e+02 Score=16.24 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.3
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
++.|+.++....|++++...
T Consensus 16 ~i~i~r~a~t~~vkka~~~~ 35 (77)
T PF01929_consen 16 VIKIPRGARTKTVKKAWEKA 35 (77)
T ss_dssp ETTTTTTTCHHHHHHHHHHH
T ss_pred EEeccCCCCcHHHHHHHHHc
Confidence 45689999999999998654
No 166
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=20.31 E-value=1.6e+02 Score=15.62 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC
Q 047025 16 SCDDLKKAYEKMAAKWNPDKYPD 38 (85)
Q Consensus 16 ~~~~Ik~ayr~l~~~~hPD~~~~ 38 (85)
..+.|..+++.+++..|-|..+.
T Consensus 43 ~~~~l~~~wk~ll~~q~HD~i~G 65 (79)
T smart00872 43 PSEQLEELWKALLLNQFHDAITG 65 (79)
T ss_pred cHHHHHHHHHHHHHhcCcccCCc
Confidence 56778999999999888888765
No 167
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=20.23 E-value=50 Score=17.65 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHH
Q 047025 15 ASCDDLKKAYEKM 27 (85)
Q Consensus 15 a~~~~Ik~ayr~l 27 (85)
.|.++|..+||.+
T Consensus 3 ~s~eqv~~aFr~l 15 (69)
T PF08726_consen 3 DSAEQVEEAFRAL 15 (69)
T ss_dssp STCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3678889999888
No 168
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=20.06 E-value=1.1e+02 Score=17.93 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=18.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCC
Q 047025 9 LGVDRNASCDDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l~~~~hPD 34 (85)
+|..++++.++|.++..+....++-+
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~~~ 31 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAGLS 31 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT--
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 46778999999999999999985543
Done!