Query 047025
Match_columns 85
No_of_seqs 179 out of 1178
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 100.0 1.4E-28 4.8E-33 135.3 6.9 72 1-74 1-72 (77)
2 2ej7_A HCG3 gene; HCG3 protein 99.9 2.8E-27 9.7E-32 131.3 7.6 73 2-74 8-80 (82)
3 2dmx_A DNAJ homolog subfamily 99.9 4.9E-27 1.7E-31 132.9 6.8 73 3-75 9-81 (92)
4 2ctp_A DNAJ homolog subfamily 99.9 1.2E-26 4.2E-31 127.7 7.6 70 2-73 6-75 (78)
5 2dn9_A DNAJ homolog subfamily 99.9 1.4E-26 4.8E-31 127.8 7.7 71 2-73 6-76 (79)
6 2cug_A Mkiaa0962 protein; DNAJ 99.9 8.1E-27 2.8E-31 131.2 6.8 70 2-73 16-85 (88)
7 2ctr_A DNAJ homolog subfamily 99.9 8E-27 2.7E-31 131.2 6.1 70 2-73 6-75 (88)
8 2lgw_A DNAJ homolog subfamily 99.9 1.6E-26 5.4E-31 132.6 5.6 69 3-71 2-70 (99)
9 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.1E-26 3.9E-31 133.9 4.7 72 1-73 1-72 (103)
10 1wjz_A 1700030A21RIK protein; 99.9 1.9E-26 6.5E-31 130.8 4.3 72 2-73 15-91 (94)
11 2yua_A Williams-beuren syndrom 99.9 1.1E-25 3.9E-30 128.9 7.0 69 2-71 16-84 (99)
12 2och_A Hypothetical protein DN 99.9 2E-25 6.8E-30 121.6 7.4 65 2-70 7-71 (73)
13 2ctw_A DNAJ homolog subfamily 99.9 3.2E-25 1.1E-29 129.0 7.9 69 2-71 16-84 (109)
14 2ctq_A DNAJ homolog subfamily 99.9 5E-25 1.7E-29 128.7 6.6 69 2-71 19-87 (112)
15 2o37_A Protein SIS1; HSP40, J- 99.9 1.2E-24 4.1E-29 123.2 6.7 65 2-70 7-71 (92)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 3.1E-24 1.1E-28 124.7 6.3 72 2-73 14-88 (109)
17 2ys8_A RAB-related GTP-binding 99.9 3.3E-24 1.1E-28 121.0 5.2 62 2-65 26-87 (90)
18 3apq_A DNAJ homolog subfamily 99.9 1.1E-23 3.8E-28 132.9 6.8 69 3-72 2-70 (210)
19 2l6l_A DNAJ homolog subfamily 99.9 1.3E-23 4.4E-28 128.5 6.8 67 2-68 9-80 (155)
20 3hho_A CO-chaperone protein HS 99.9 9.8E-23 3.4E-27 126.8 6.9 68 2-69 3-76 (174)
21 1fpo_A HSC20, chaperone protei 99.9 6.9E-23 2.4E-27 127.2 6.1 68 3-70 1-74 (171)
22 1iur_A KIAA0730 protein; DNAJ 99.9 9.7E-23 3.3E-27 114.6 5.0 62 3-64 16-77 (88)
23 1faf_A Large T antigen; J doma 99.9 2.1E-22 7.2E-27 111.2 5.7 60 3-67 11-72 (79)
24 1gh6_A Large T antigen; tumor 99.9 1.6E-23 5.5E-28 122.6 0.9 63 3-70 8-72 (114)
25 3lz8_A Putative chaperone DNAJ 99.9 1.2E-23 4.1E-28 141.6 0.0 65 3-69 28-92 (329)
26 3bvo_A CO-chaperone protein HS 99.9 5.7E-22 2E-26 126.2 7.2 67 2-68 42-114 (207)
27 2pf4_E Small T antigen; PP2A, 99.8 5.4E-23 1.9E-27 127.8 0.3 64 3-71 11-76 (174)
28 1n4c_A Auxilin; four helix bun 99.8 3.9E-22 1.3E-26 124.6 3.2 64 3-66 117-182 (182)
29 2qwo_B Putative tyrosine-prote 99.8 2.7E-21 9.3E-26 109.3 2.9 57 3-59 33-91 (92)
30 3uo3_A J-type CO-chaperone JAC 99.8 4.5E-21 1.5E-25 120.0 3.5 64 2-69 10-80 (181)
31 2guz_A Mitochondrial import in 99.8 8E-21 2.7E-25 102.9 3.7 56 3-63 14-70 (71)
32 3apo_A DNAJ homolog subfamily 99.8 3.2E-21 1.1E-25 139.7 2.2 71 2-73 20-90 (780)
33 3ag7_A Putative uncharacterize 99.8 5.2E-21 1.8E-25 110.7 2.0 59 2-61 40-104 (106)
34 2y4t_A DNAJ homolog subfamily 99.5 1.7E-14 5.9E-19 96.4 5.2 66 3-68 382-449 (450)
35 2guz_B Mitochondrial import in 99.4 9.4E-13 3.2E-17 69.8 5.6 51 5-60 6-59 (65)
36 2pzi_A Probable serine/threoni 94.3 0.031 1E-06 40.2 3.0 45 3-56 629-675 (681)
37 1qqr_A Streptokinase domain B; 70.5 2.6 8.9E-05 24.8 2.0 30 6-35 35-64 (138)
38 4a3n_A Transcription factor SO 62.7 9.1 0.00031 19.0 3.0 38 21-64 14-51 (71)
39 1hry_A Human SRY; DNA, DNA-bin 60.0 15 0.00052 18.5 4.3 37 21-63 16-52 (76)
40 3nm9_A HMG-D, high mobility gr 58.5 12 0.00042 18.8 3.1 33 21-59 15-47 (73)
41 3f27_D Transcription factor SO 56.6 16 0.00054 18.8 3.4 38 21-64 18-55 (83)
42 1wz6_A HMG-box transcription f 56.2 19 0.00065 18.5 4.3 37 21-63 19-55 (82)
43 2crj_A SWI/SNF-related matrix- 53.2 18 0.00062 19.1 3.3 38 21-64 19-56 (92)
44 1ug2_A 2610100B20RIK gene prod 51.1 10 0.00036 20.8 2.1 21 15-35 68-88 (95)
45 1hme_A High mobility group pro 50.5 22 0.00074 17.9 3.3 37 22-64 19-55 (77)
46 2lxi_A RNA-binding protein 10; 50.3 16 0.00056 18.9 2.8 20 9-28 7-26 (91)
47 1wgf_A Upstream binding factor 50.1 16 0.00055 19.3 2.8 38 21-64 32-69 (90)
48 1i11_A Transcription factor SO 49.1 15 0.0005 18.9 2.5 37 22-64 17-53 (81)
49 1k99_A Upstream binding factor 48.2 31 0.0011 18.5 3.9 37 22-64 23-59 (99)
50 3u2b_C Transcription factor SO 46.9 22 0.00076 17.9 3.0 37 21-63 14-50 (79)
51 2e6o_A HMG box-containing prot 46.3 22 0.00075 18.5 2.9 37 21-63 29-65 (87)
52 2cs1_A PMS1 protein homolog 1; 45.3 19 0.00064 19.0 2.6 37 22-64 20-56 (92)
53 2b7e_A PRE-mRNA processing pro 41.2 34 0.0012 17.1 4.6 46 18-67 3-53 (59)
54 2lr8_A CAsp8-associated protei 47.0 5.8 0.0002 20.7 0.0 21 15-35 48-68 (70)
55 1gt0_D Transcription factor SO 40.6 18 0.0006 18.5 1.9 37 22-64 15-51 (80)
56 2d7l_A WD repeat and HMG-box D 40.4 18 0.00061 18.9 1.9 42 21-67 17-58 (81)
57 1iqt_A AUF1, heterogeneous nuc 40.4 30 0.001 16.7 2.8 19 9-27 5-23 (75)
58 1j46_A SRY, sex-determining re 40.2 23 0.00078 18.4 2.4 36 22-63 17-52 (85)
59 2lef_A LEF-1 HMG, protein (lym 39.8 24 0.00081 18.3 2.4 36 22-63 15-50 (86)
60 1vq8_S 50S ribosomal protein L 39.8 18 0.00062 19.4 1.9 21 8-28 26-46 (85)
61 4euw_A Transcription factor SO 39.3 23 0.00079 19.3 2.4 38 21-64 41-78 (106)
62 3r8s_T 50S ribosomal protein L 38.0 20 0.00069 19.5 2.0 20 8-27 31-50 (93)
63 2zjr_Q 50S ribosomal protein L 37.7 20 0.00069 19.6 1.9 21 8-28 26-46 (95)
64 2co9_A Thymus high mobility gr 36.0 26 0.00088 18.9 2.2 36 22-63 30-65 (102)
65 2qlc_A DNA repair protein RADC 35.8 46 0.0016 18.9 3.3 28 31-58 76-103 (126)
66 2nqb_D Histone H2B; nucleosome 35.5 57 0.002 18.8 3.6 37 25-63 40-77 (123)
67 3j21_T 50S ribosomal protein L 35.3 24 0.0008 19.0 1.9 20 8-27 27-46 (86)
68 3tve_T 50S ribosomal protein L 35.2 23 0.0008 19.2 1.9 20 8-27 25-44 (92)
69 3nph_B Phycobilisome 32.1 kDa 34.4 55 0.0019 19.4 3.6 27 9-35 4-34 (148)
70 1tzy_B Histone H2B; histone-fo 33.8 63 0.0021 18.7 3.6 38 24-63 42-80 (126)
71 1cf7_A Protein (transcription 33.4 17 0.00059 19.0 1.1 42 14-67 9-50 (76)
72 2eqz_A High mobility group pro 32.9 54 0.0018 16.9 4.4 39 22-64 28-66 (86)
73 4aj5_K Spindle and kinetochore 32.9 72 0.0025 18.3 3.8 44 16-59 20-64 (123)
74 1iqo_A Hypothetical protein MT 32.4 32 0.0011 18.6 2.1 33 2-34 47-79 (88)
75 1ckt_A High mobility group 1 p 32.1 49 0.0017 16.2 4.5 38 23-64 15-52 (71)
76 2hzc_A Splicing factor U2AF 65 32.0 48 0.0016 16.4 2.8 20 9-28 12-31 (87)
77 2mss_A Protein (musashi1); RNA 30.5 37 0.0013 16.4 2.1 19 9-27 5-23 (75)
78 3pru_C Phycobilisome 32.1 kDa 29.6 30 0.001 20.7 1.9 27 9-35 9-39 (154)
79 2cqn_A Formin-binding protein 29.2 65 0.0022 16.7 4.6 53 14-67 5-59 (77)
80 1hkq_A REPA, replication prote 28.4 8.1 0.00028 22.0 -0.8 13 46-58 64-76 (132)
81 1wxl_A Single-strand recogniti 28.3 61 0.0021 16.0 2.8 30 22-57 16-45 (73)
82 2lkz_A RNA-binding protein 5; 28.1 30 0.001 18.3 1.6 19 9-27 15-33 (95)
83 4fxv_A ELAV-like protein 1; RN 27.5 42 0.0014 17.6 2.1 20 8-27 24-43 (99)
84 1zda_A Mini protein A domain, 27.2 16 0.00054 16.6 0.3 11 4-14 13-23 (38)
85 3tq6_A Transcription factor A, 27.2 67 0.0023 19.7 3.3 37 22-64 22-58 (214)
86 2i4r_A V-type ATP synthase sub 27.0 48 0.0016 18.1 2.3 24 6-29 24-50 (102)
87 1xsv_A Hypothetical UPF0122 pr 26.4 37 0.0013 18.6 1.8 43 8-57 50-92 (113)
88 2xpn_B SPT6, chromatin structu 26.3 13 0.00043 15.3 -0.1 9 5-13 5-13 (26)
89 2div_A TRNA selenocysteine ass 26.1 61 0.0021 16.5 2.6 20 8-27 14-33 (99)
90 2dnp_A RNA-binding protein 14; 26.0 69 0.0024 16.0 2.8 20 8-27 14-33 (90)
91 2hvz_A Splicing factor, argini 25.7 67 0.0023 16.5 2.8 20 8-27 5-24 (101)
92 2gzk_A Sex-determining region 25.7 86 0.003 18.0 3.5 34 25-64 20-53 (159)
93 3tmm_A Transcription factor A, 25.5 72 0.0025 20.0 3.2 36 23-64 55-90 (238)
94 2bye_A Phospholipase C, epsilo 25.3 33 0.0011 19.4 1.4 21 2-22 19-39 (110)
95 2dhg_A TRNA selenocysteine ass 25.3 63 0.0022 16.6 2.6 19 8-26 14-32 (104)
96 2cqh_A IGF-II mRNA-binding pro 25.2 60 0.0021 16.4 2.5 20 8-27 13-32 (93)
97 2ov6_A V-type ATP synthase sub 25.1 31 0.0011 18.7 1.3 24 6-29 15-41 (101)
98 2ket_A Cathelicidin-6; antimic 25.0 46 0.0016 13.5 2.8 17 18-34 4-20 (27)
99 2dgp_A Bruno-like 4, RNA bindi 24.9 72 0.0025 16.5 2.8 20 8-27 18-37 (106)
100 1x5s_A Cold-inducible RNA-bind 24.9 73 0.0025 16.3 2.8 20 8-27 17-36 (102)
101 1fj7_A Nucleolin RBD1, protein 24.7 71 0.0024 16.4 2.7 25 8-32 22-46 (101)
102 2ytc_A PRE-mRNA-splicing facto 24.2 52 0.0018 16.2 2.1 20 8-27 17-36 (85)
103 3hm5_A DNA methyltransferase 1 23.9 73 0.0025 17.3 2.7 20 14-33 66-85 (93)
104 1uaw_A Mouse-musashi-1; RNP-ty 23.9 42 0.0014 16.2 1.6 19 9-27 6-24 (77)
105 2dgu_A Heterogeneous nuclear r 23.7 77 0.0026 16.4 2.8 20 8-27 16-35 (103)
106 1uzc_A Hypothetical protein FL 23.5 84 0.0029 16.0 4.6 22 14-35 11-32 (71)
107 2dis_A Unnamed protein product 23.2 78 0.0027 16.4 2.7 21 8-28 13-33 (109)
108 1mdy_A Protein (MYOD BHLH doma 23.1 64 0.0022 16.3 2.2 15 45-59 22-36 (68)
109 2diu_A KIAA0430 protein; struc 23.1 84 0.0029 17.1 2.8 25 8-32 14-38 (96)
110 1dee_G Immunoglobulin G bindin 23.0 14 0.00049 18.1 -0.3 27 4-33 8-34 (54)
111 3bs9_A Nucleolysin TIA-1 isofo 22.8 66 0.0022 15.8 2.3 20 8-27 11-30 (87)
112 2cqi_A Nucleolysin TIAR; RNA r 22.6 79 0.0027 16.2 2.7 20 8-27 20-39 (103)
113 2dgv_A HnRNP M, heterogeneous 22.6 60 0.002 16.3 2.1 20 8-27 13-32 (92)
114 3md1_A Nuclear and cytoplasmic 22.5 67 0.0023 15.6 2.3 20 8-27 6-25 (83)
115 2dgw_A Probable RNA-binding pr 22.4 62 0.0021 16.2 2.2 20 8-27 15-34 (91)
116 2ql2_B Neurod1, neurogenic dif 22.4 49 0.0017 16.3 1.6 15 45-59 12-26 (60)
117 2rq5_A Protein jumonji; develo 22.0 70 0.0024 18.1 2.4 46 22-67 64-110 (121)
118 830c_A MMP-13, MMP-13; matrix 21.9 90 0.0031 18.4 3.0 28 6-33 17-44 (168)
119 3ma2_D Matrix metalloproteinas 21.9 90 0.0031 18.8 3.0 26 6-31 15-40 (181)
120 2e5j_A Methenyltetrahydrofolat 21.8 76 0.0026 16.2 2.5 20 8-27 24-43 (97)
121 3k6g_D Telomeric repeat-bindin 21.8 67 0.0023 14.8 1.9 12 48-59 12-23 (42)
122 1x5t_A Splicing factor 3B subu 21.5 63 0.0022 16.3 2.1 20 8-27 10-29 (96)
123 2jss_A Chimera of histone H2B. 21.5 1.5E+02 0.005 18.0 4.6 37 23-61 8-45 (192)
124 4iej_A DNA methyltransferase 1 21.4 89 0.0031 17.0 2.7 20 14-33 66-85 (93)
125 2dgt_A RNA-binding protein 30; 21.3 67 0.0023 16.2 2.2 20 8-27 15-34 (92)
126 1aab_A High mobility group pro 21.2 55 0.0019 16.6 1.8 39 22-64 20-58 (83)
127 3d2w_A TAR DNA-binding protein 21.2 73 0.0025 16.2 2.3 20 8-27 16-35 (89)
128 1r4v_A Hypothetical protein AQ 21.2 1.5E+02 0.0051 18.0 4.1 17 22-38 140-156 (171)
129 3ucg_A Polyadenylate-binding p 21.1 74 0.0025 15.7 2.3 20 8-27 11-30 (89)
130 2dnq_A RNA-binding protein 4B; 20.8 70 0.0024 16.0 2.2 19 9-27 14-32 (90)
131 3kp1_E D-ornithine aminomutase 20.8 1E+02 0.0035 17.6 2.9 18 14-31 16-33 (121)
132 2cpf_A RNA binding motif prote 20.8 67 0.0023 16.3 2.1 20 8-27 10-29 (98)
133 1why_A Hypothetical protein ri 20.8 63 0.0022 16.5 2.0 20 8-27 22-41 (97)
134 2cqc_A Arginine/serine-rich sp 20.7 65 0.0022 16.2 2.0 20 8-27 20-39 (95)
135 2jvr_A Nucleolar protein 3; RN 20.5 92 0.0031 16.9 2.7 21 8-28 33-53 (111)
136 3p5t_L Cleavage and polyadenyl 20.1 72 0.0025 16.0 2.1 19 9-27 7-25 (90)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.95 E-value=1.4e-28 Score=135.28 Aligned_cols=72 Identities=35% Similarity=0.633 Sum_probs=66.6
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 74 (85)
|+.|||+||||+++++.++|+++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+....
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 72 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL 72 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence 89999999999999999999999999999999999987 5688999999999999999999999997665443
No 2
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=2.8e-27 Score=131.35 Aligned_cols=73 Identities=45% Similarity=0.764 Sum_probs=67.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPY 74 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~ 74 (85)
..|||+||||+++++.++||++|+++++++|||+++...+.+.+.|+.|++||++|+||.+|..||..+..+.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 3689999999999999999999999999999999988767889999999999999999999999997765543
No 3
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=132.93 Aligned_cols=73 Identities=48% Similarity=0.814 Sum_probs=67.2
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNPYG 75 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 75 (85)
.|||+||||+++++.++||++|+++++++|||+++...+.+.+.|+.|++||++|+||.+|..||..+...+.
T Consensus 9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 81 (92)
T 2dmx_A 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWR 81 (92)
T ss_dssp CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSC
T ss_pred cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence 6899999999999999999999999999999999876678899999999999999999999999977665543
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=127.73 Aligned_cols=70 Identities=39% Similarity=0.597 Sum_probs=65.1
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||+++++.++|+++|+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999987 778999999999999999999999999766544
No 5
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=127.76 Aligned_cols=71 Identities=44% Similarity=0.724 Sum_probs=64.7
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 57999999999999999999999999999999998754 467899999999999999999999999766544
No 6
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=8.1e-27 Score=131.17 Aligned_cols=70 Identities=40% Similarity=0.644 Sum_probs=65.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
+.|||+||||+++++.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS--TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 6799999999999999999999999999999999987 568899999999999999999999999766544
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=8e-27 Score=131.19 Aligned_cols=70 Identities=41% Similarity=0.608 Sum_probs=65.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||+++++.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 75 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRKEYDTLGHSA 75 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 4799999999999999999999999999999999986 788999999999999999999999999776544
No 8
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=132.57 Aligned_cols=69 Identities=49% Similarity=0.778 Sum_probs=64.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
.|||+||||+++++.++||++||++++++|||+++...+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 689999999999999999999999999999999987667889999999999999999999999996543
No 9
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.93 E-value=1.1e-26 Score=133.88 Aligned_cols=72 Identities=36% Similarity=0.623 Sum_probs=66.0
Q ss_pred CCCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 1 MGADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 1 ~~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
|..|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 72 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA 72 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence 789999999999999999999999999999999998753 457889999999999999999999999776644
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.93 E-value=1.9e-26 Score=130.82 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=65.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----cHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD-----NKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||+++++.++||++||++++++|||+++. ..+.+.+.|+.|++||++|+||.+|..||.....+
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 91 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence 4699999999999999999999999999999999863 23678899999999999999999999999766554
No 11
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.92 E-value=1.1e-25 Score=128.90 Aligned_cols=69 Identities=23% Similarity=0.416 Sum_probs=63.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||....
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 57899999999999999999999999999999999754 5688999999999999999999999997544
No 12
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.92 E-value=2e-25 Score=121.55 Aligned_cols=65 Identities=40% Similarity=0.728 Sum_probs=60.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
+.|||+||||+++++.++|+++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..+
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~g 71 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQIYDQGG 71 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 57999999999999999999999999999999999763 578999999999999999999999654
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.92 E-value=3.2e-25 Score=129.01 Aligned_cols=69 Identities=39% Similarity=0.683 Sum_probs=63.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
+.|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999864 5788999999999999999999999996553
No 14
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=5e-25 Score=128.70 Aligned_cols=69 Identities=26% Similarity=0.413 Sum_probs=63.2
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
..|||+||||+++++.++||++||++++++|||+++.. +.+.+.|+.|++||++|+||.+|..||..+.
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 47999999999999999999999999999999999853 4688999999999999999999999996543
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-24 Score=123.17 Aligned_cols=65 Identities=32% Similarity=0.554 Sum_probs=60.0
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
+.|||+||||+++++.++|+++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..+
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~ 71 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKREIYDQYG 71 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHHHHHHHC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHHHHHHHC
Confidence 57999999999999999999999999999999999764 469999999999999999999999543
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.90 E-value=3.1e-24 Score=124.69 Aligned_cols=72 Identities=28% Similarity=0.378 Sum_probs=64.9
Q ss_pred CCCchhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC--cHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNA-SCDDLKKAYEKMAAKWNPDKYPD--NKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a-~~~~Ik~ayr~l~~~~hPD~~~~--~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
..|||+||||++++ +.++||++||++++++|||+++. ..+.+.+.|+.|++||++|+||.+|..||..+..+
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~ 88 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 88 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence 57999999999999 99999999999999999999875 34678899999999999999999999999665443
No 17
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=3.3e-24 Score=120.98 Aligned_cols=62 Identities=29% Similarity=0.442 Sum_probs=57.8
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhh
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKL 65 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~ 65 (85)
..|||+||||+++++.++||++||++++++|||+++. +.+.+.|+.|++||++|+||.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC--TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCcccccC
Confidence 4799999999999999999999999999999999987 5678899999999999999998764
No 18
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.89 E-value=1.1e-23 Score=132.85 Aligned_cols=69 Identities=30% Similarity=0.556 Sum_probs=63.4
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLN 72 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 72 (85)
+|||+||||+++|+.++||+|||++++++|||+++.. +.+.+.|+.|++||++|+||.+|+.||..+..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence 5899999999999999999999999999999999754 46889999999999999999999999976554
No 19
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=128.49 Aligned_cols=67 Identities=28% Similarity=0.484 Sum_probs=61.4
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----HHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDN-----KKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
..|||+||||+++++.++||++||++++++|||+++.. ...+.+.|+.|++||++|+||.+|+.||.
T Consensus 9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~ 80 (155)
T 2l6l_A 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDL 80 (155)
T ss_dssp CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHH
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46999999999999999999999999999999998653 24578999999999999999999999994
No 20
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.88 E-value=9.8e-23 Score=126.81 Aligned_cols=68 Identities=15% Similarity=0.340 Sum_probs=60.6
Q ss_pred CCCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcH----HHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 2 GADYYKILGVDRNAS--CDDLKKAYEKMAAKWNPDKYPDNK----KEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
.+|||+||||+++++ ..+|+++||++++++|||+++... ..+.+.|..|++||+||+||.+|..||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 479999999999887 999999999999999999987542 23778999999999999999999999943
No 21
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.88 E-value=6.9e-23 Score=127.21 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=61.2
Q ss_pred CCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcH----HHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 3 ADYYKILGVDRNA--SCDDLKKAYEKMAAKWNPDKYPDNK----KEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 3 ~d~y~iLgl~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~----~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
+|||+||||++++ +..+|+++||++++++|||+++... ..+.+.|..|++||+||+||.+|..||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 4899999999999 9999999999999999999987642 356789999999999999999999999543
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=9.7e-23 Score=114.56 Aligned_cols=62 Identities=18% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.++|+||||+++++.++||++||++++++|||+++...+.+.+.|+.|++||++|++...|.
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 57899999999999999999999999999999998876778999999999999999987763
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.87 E-value=2.1e-22 Score=111.16 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=55.5
Q ss_pred CCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 3 ADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 3 ~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
.++|+||||+++ ++.++||++||++++++|||++++ .+.|+.|++||++|+++.+|..++
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 368999999999 999999999999999999999876 479999999999999999998855
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.87 E-value=1.6e-23 Score=122.65 Aligned_cols=63 Identities=29% Similarity=0.420 Sum_probs=58.6
Q ss_pred CCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCC
Q 047025 3 ADYYKILGVDRNASC--DDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPR 70 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 70 (85)
.++|+||||+++++. ++||++||++++++|||++++ .++|+.|++||+||+||.+|+.||..+
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence 579999999999998 999999999999999999876 479999999999999999999999654
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.86 E-value=1.2e-23 Score=141.57 Aligned_cols=65 Identities=35% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
+|||+||||+++|+.++||+|||+|++++|||+++. +.+.++|++|++||++|+||.+|+.||..
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE--NDAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC--hHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 699999999999999999999999999999999986 57889999999999999999999999976
No 26
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=126.22 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=60.0
Q ss_pred CCCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 2 GADYYKILGVDRN--ASCDDLKKAYEKMAAKWNPDKYPDN----KKEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 2 ~~d~y~iLgl~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
..|||+||||+++ ++..+||++||+|++++|||+++.. +..+.+.|+.|++||+||+||.+|..||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4689999999986 7899999999999999999998753 23567899999999999999999999983
No 27
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.85 E-value=5.4e-23 Score=127.76 Aligned_cols=64 Identities=28% Similarity=0.395 Sum_probs=56.5
Q ss_pred CCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCC
Q 047025 3 ADYYKILGVDRNAS--CDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRL 71 (85)
Q Consensus 3 ~d~y~iLgl~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 71 (85)
.|+|+||||+++|+ .++||+|||++++++|||++++ .+.|+.|++||++|+||.+|+.||..+.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 58999999999998 6999999999999999999876 3789999999999999999999997663
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.84 E-value=3.9e-22 Score=124.62 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHHHHHHHHHHhcChHHHhhh
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNK--KEAEAKLNRVCEAYEIVSDQVRCKLQ 66 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Y 66 (85)
.|+|+||||++.++.++||++||++++++|||+++... ..+.+.|+.|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999999999999999999999999987532 24889999999999999999999876
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.82 E-value=2.7e-21 Score=109.29 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHHHHHHHHHHhcC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNK--KEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--~~a~~~f~~i~~Ay~~L~d 59 (85)
.++|++|||++.++.++||+|||++++++|||++++.. ..+++.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999987642 3588999999999999974
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.82 E-value=4.5e-21 Score=119.96 Aligned_cols=64 Identities=17% Similarity=0.335 Sum_probs=58.2
Q ss_pred CCCchhhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCC
Q 047025 2 GADYYKIL------GVDR-NASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGP 69 (85)
Q Consensus 2 ~~d~y~iL------gl~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 69 (85)
.+|||+|| |+++ +++..+||++||++++++|||+++. +.+.|..|++||+||+||.+|..||..
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 36999999 4665 8999999999999999999999876 568999999999999999999999963
No 31
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8e-21 Score=102.87 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 3 ADYYKILGVDR-NASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 3 ~d~y~iLgl~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
.++|+||||++ +++.++|+++||++++++|||++.+ .+.|+.|++||++|+++..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence 47899999999 7999999999999999999999765 36999999999999987544
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.81 E-value=3.2e-21 Score=139.68 Aligned_cols=71 Identities=30% Similarity=0.534 Sum_probs=40.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhcCCCCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQKGPRLNP 73 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 73 (85)
+.|||+||||+++|+.++||+|||++++++|||+++.. +.+.+.|+.|++||++|+||.+|+.||..+...
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence 57999999999999999999999999999999998653 568899999999999999999999999876543
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.81 E-value=5.2e-21 Score=110.73 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=51.9
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c---HHHHHHHHHHHHHHHHHhcChH
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPD---N---KKEAEAKLNRVCEAYEIVSDQV 61 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~---~~~a~~~f~~i~~Ay~~L~d~~ 61 (85)
+.|||+||+++. |+.++||+|||++++++|||+++. . ...+.++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 569999999996 999999999999999999999753 1 2357899999999999999974
No 34
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.50 E-value=1.7e-14 Score=96.43 Aligned_cols=66 Identities=42% Similarity=0.700 Sum_probs=56.9
Q ss_pred CCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHHHHHHHHHHhcChHHHhhhcC
Q 047025 3 ADYYKILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNK--KEAEAKLNRVCEAYEIVSDQVRCKLQKG 68 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~ 68 (85)
.++|++||+...++.++|+++|+++++++|||+.+... ..+.+.|+.|.+||++|+||.+|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 48999999999999999999999999999999998743 5688999999999999999999999995
No 35
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.38 E-value=9.4e-13 Score=69.83 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=45.3
Q ss_pred chhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcCh
Q 047025 5 YYKILGVDRN---ASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQ 60 (85)
Q Consensus 5 ~y~iLgl~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~ 60 (85)
-|.||||+++ ++.++|+++||+|+..+|||++.+ ......|++|.++|...
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHH
Confidence 4789999999 999999999999999999999877 45677899999999754
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.26 E-value=0.031 Score=40.16 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=34.9
Q ss_pred CCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Q 047025 3 ADYYKILGVDRNASC--DDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEI 56 (85)
Q Consensus 3 ~d~y~iLgl~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~ 56 (85)
.+||.+||++-+... .+|+++||++++..+++ .+++..|..|..|
T Consensus 629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~---------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ---------RHRYTLVDMANKV 675 (681)
T ss_dssp CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH---------HHHHHHHHHHHHH
T ss_pred CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHhccc
Confidence 568999999776544 67999999999965553 3678888888766
No 37
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=70.54 E-value=2.6 Score=24.83 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=26.4
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
+..|.|....+.++++++-..+..+.||+-
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 566778888899999999999999999984
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=62.73 E-value=9.1 Score=18.99 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 14 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~ 51 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEKRP 51 (71)
T ss_dssp HHHHHHHHHTTCTTSC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Confidence 3455666777788754 2467888999999998655443
No 39
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=60.00 E-value=15 Score=18.49 Aligned_cols=37 Identities=8% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
.+..|..++.-||+.... +..+.|.+.|..|++..+.
T Consensus 16 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK~ 52 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS------EISKQLGYQWKMLTEAEKW 52 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS------HHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH------HHHHHHHhHHHhCCHHHHH
Confidence 345566667779987654 5677888899988855443
No 40
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=58.48 E-value=12 Score=18.80 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d 59 (85)
.+..|..++.-||+... .+..+.|.+.|..|++
T Consensus 15 ~~~~r~~~~~~~p~~~~------~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 15 LNSARESIKRENPGIKV------TEVAKRGGELWRAMKD 47 (73)
T ss_dssp HHHHHHHHHHHSSSCCH------HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHCCCCCH------HHHHHHHHHHHHcCCc
Confidence 34456666777887642 4678889999999986
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=56.62 E-value=16 Score=18.77 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 18 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp HHHHHHHHHHHCSSSC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Confidence 4556667777888764 2467888899999998655443
No 42
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=56.20 E-value=19 Score=18.46 Aligned_cols=37 Identities=5% Similarity=0.068 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
.+.+|..++.-||+.... +..+.|.+.|..|++..+.
T Consensus 19 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK~ 55 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR------GATKILADWWAVLDPKEKQ 55 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT------HHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCHH------HHHHHHHHHHhhCCHHHHH
Confidence 345666677788986544 5677888889988865443
No 43
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=53.24 E-value=18 Score=19.09 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 19 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2crj_A 19 LNERREQIRTRHPDLP------FPEITKMLGAEWSKLQPAEKQR 56 (92)
T ss_dssp HHHHHHHHHHHCTTCC------HHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 3445666677788754 3467788888999988766544
No 44
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=51.12 E-value=10 Score=20.81 Aligned_cols=21 Identities=0% Similarity=0.129 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q 047025 15 ASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 15 a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
-+.++|+.+|++|++.+|.-.
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 477889999999988887644
No 45
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=50.52 E-value=22 Score=17.91 Aligned_cols=37 Identities=8% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 19 ~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS------IGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHCTTCC------HHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 445555666788753 3467888999999999765443
No 46
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=50.30 E-value=16 Score=18.93 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l~ 28 (85)
=||+.+++.++|++.+.+.-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999988763
No 47
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=50.08 E-value=16 Score=19.27 Aligned_cols=38 Identities=8% Similarity=0.129 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 32 ~~~~r~~~k~~~P~~~------~~eisk~lg~~Wk~ls~eeK~~ 69 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS------ESELTRLLARMWNDLSEKKKAK 69 (90)
T ss_dssp HHHTHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 3445666677788743 3467888999999998665544
No 48
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=49.11 E-value=15 Score=18.89 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+.++..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 17 ~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~ 53 (81)
T 1i11_A 17 KDERRKILQAFPDMH------NSNISKILGSRWKAMTNLEKQP 53 (81)
T ss_dssp HHHHHHHHTTCSSCC------HHHHHHHHHHHHTTSCSGGGHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHhhhhhCCHHHHHH
Confidence 445556666678653 3467788999999998766544
No 49
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=48.25 E-value=31 Score=18.53 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+... .+..+.|.+.|..|++..+..
T Consensus 23 ~~~r~~ik~~~P~~~~------~eisk~lg~~Wk~ls~eeK~~ 59 (99)
T 1k99_A 23 MEKRAKYAKLHPEMSN------LDLTKILSKKYKELPEKKKMK 59 (99)
T ss_dssp HHHHHHHHTTCTTSCS------HHHHHHHHHHHHHSCSTTHHH
T ss_pred HHHHHHHHHHCCCCCH------HHHHHHHHHHHHhCCHHHHHH
Confidence 4455566667887543 367788999999998765544
No 50
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=46.87 E-value=22 Score=17.93 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+.
T Consensus 14 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK~ 50 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH------NAEISKRLGKRWKLLKDSDKI 50 (79)
T ss_dssp HHHHHHHHHTTSTTSC------HHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHHH
Confidence 3455666666778654 246778888899988865443
No 51
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=46.31 E-value=22 Score=18.53 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
.+.+|..++.-||+.. ..+..+.|.+.|..|++..+.
T Consensus 29 ~~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~ 65 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD------NRAISVILGDRWKKMKNEERR 65 (87)
T ss_dssp HHHTHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhhCCHHHHH
Confidence 3455666677788753 246778899999999865544
No 52
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.34 E-value=19 Score=19.03 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.5
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 20 ~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2cs1_A 20 QDHRPQFLIENPKTS------LEDATLQIEELWKTLSEEEKLK 56 (92)
T ss_dssp HHHHHHHHHHCCSSC------HHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Confidence 445666677788764 2467788888999888655443
No 53
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.19 E-value=34 Score=17.05 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH---HHHHHHhcC-hH-HHhhhc
Q 047025 18 DDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRV---CEAYEIVSD-QV-RCKLQK 67 (85)
Q Consensus 18 ~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i---~~Ay~~L~d-~~-~R~~Yd 67 (85)
+|..++|.+|.+...-+..-+ -++..+.| ..-|.+|.| |. ++..|+
T Consensus 3 eEae~aF~~lL~~~~V~s~ws----weqamr~i~i~DPrY~al~d~~~eRK~~Fe 53 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS----FSRIISELGTRDPRYWMVDDDPLWKKEMFE 53 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC----HHHHHHHHHHHCTHHHHSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc----HHHHHHHhccCCCccccccCCHHHHHHHHH
Confidence 567889999998876665543 34555556 458999996 76 444554
No 54
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=46.96 E-value=5.8 Score=20.67 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q 047025 15 ASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 15 a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
-+.++|+.+|++|++.+|-.+
T Consensus 48 ks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 48 KNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 356667777777777666543
No 55
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=40.59 E-value=18 Score=18.46 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 15 ~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~eeK~~ 51 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH------NSEISKRLGAEWKLLSETEKRP 51 (80)
T ss_dssp HHHHHHHHTTSTTSC------HHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 345555666778743 2467788888888888654433
No 56
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.44 E-value=18 Score=18.92 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
-+.+|..++.-||+.. + ..+..+.|.+.|..|++..+....+
T Consensus 17 ~~e~R~~ik~~~P~~~-~----~~eisK~lge~Wk~ls~eeK~~y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D----EADIIKEGMIRFRVLSTEERKVWAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S----HHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-h----hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456677778899864 1 3477889999999999766655443
No 57
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=40.36 E-value=30 Score=16.68 Aligned_cols=19 Identities=5% Similarity=0.288 Sum_probs=16.4
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=+|+.+++.++|++.+.+.
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 4789999999999988775
No 58
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=40.22 E-value=23 Score=18.35 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+.
T Consensus 17 ~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~ 52 (85)
T 1j46_A 17 RDQRRKMALENPRMR------NSEISKQLGYQWKMLTEAEKW 52 (85)
T ss_dssp HHHHHHHHHHSTTSC------HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHHCCHHHHH
Confidence 445566667788754 236677888888888865443
No 59
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=39.84 E-value=24 Score=18.28 Aligned_cols=36 Identities=11% Similarity=-0.004 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+.
T Consensus 15 ~~~r~~~~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~ 50 (86)
T 2lef_A 15 KEMRANVVAESTLKE------SAAINQILGRRWHALSREEQA 50 (86)
T ss_dssp HHHHHHHHHHSSCCC------HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHHH
Confidence 445566667788753 246777888888888865443
No 60
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.77 E-value=18 Score=19.37 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
++-|++.|+..+||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567889999999999987773
No 61
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=39.28 E-value=23 Score=19.31 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 21 KKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 21 k~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
.+.+|..++.-||+... .+..+.|.+.|..|++..+..
T Consensus 41 ~~~~r~~~k~~~P~~~~------~eisk~lg~~Wk~ls~eeK~~ 78 (106)
T 4euw_A 41 AQAARRKLADQYPHLHN------AELSKTLGKLWRLLNESEKRP 78 (106)
T ss_dssp HHHHHHHHHHHCTTSCH------HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCH------HHHHHHHHHHHHcCCHHHHHH
Confidence 45556667777887542 367778888888888655433
No 62
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=38.03 E-value=20 Score=19.50 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=15.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
+|-|++.|+..+||+|-..+
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 35677888888888887766
No 63
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=37.73 E-value=20 Score=19.58 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=17.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
+|-|++.|+..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 577888999999998877763
No 64
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.96 E-value=26 Score=18.91 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHH
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 63 (85)
+..|..++.-||+.. ..+..+.|.+.|..|++..+.
T Consensus 30 ~~~r~~i~~~~P~~~------~~eisk~lg~~Wk~ls~eeK~ 65 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT------FGEVSKIVASMWDGLGEEQKQ 65 (102)
T ss_dssp HHHHHHHHHHCTTSC------HHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHccCCHHHHH
Confidence 445555666788753 246677788888888755443
No 65
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=35.79 E-value=46 Score=18.94 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=22.5
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 047025 31 WNPDKYPDNKKEAEAKLNRVCEAYEIVS 58 (85)
Q Consensus 31 ~hPD~~~~~~~~a~~~f~~i~~Ay~~L~ 58 (85)
.||.-.+....+..+..++|.+|-+.|.
T Consensus 76 NHPSG~~~PS~~D~~~T~~l~~a~~ll~ 103 (126)
T 2qlc_A 76 NHPSGDVQPSNADKQVTSILKKAGDLLQ 103 (126)
T ss_dssp ECSSSCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 5998776655777888999999999875
No 66
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=35.51 E-value=57 Score=18.75 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHHHHHhCCCCCCCcHHHHHH-HHHHHHHHHHHhcChHHH
Q 047025 25 EKMAAKWNPDKYPDNKKEAEA-KLNRVCEAYEIVSDQVRC 63 (85)
Q Consensus 25 r~l~~~~hPD~~~~~~~~a~~-~f~~i~~Ay~~L~d~~~R 63 (85)
.++.++.|||..-+ ..+.. .-..|+..++-+.....+
T Consensus 40 yKVLKQVhpd~gIS--skAm~ImnSfvnDiferIA~EAs~ 77 (123)
T 2nqb_D 40 YTVLKQVHPDTGIS--SKAMSIMNSFVNDIFERIAAEASR 77 (123)
T ss_dssp HHHHHHHCTTCEEC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899997655 33332 222345555555444333
No 67
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.33 E-value=24 Score=18.97 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=16.1
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
+|-|.+.|+..+||+|-.++
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~l 46 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEI 46 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 36678888999999887776
No 68
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=35.16 E-value=23 Score=19.20 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
++-|++.|+..+||+|-..+
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 46788899999999987776
No 69
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=34.39 E-value=55 Score=19.42 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=17.4
Q ss_pred cCCCCCCCH----HHHHHHHHHHHHHhCCCC
Q 047025 9 LGVDRNASC----DDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 9 Lgl~~~a~~----~~Ik~ayr~l~~~~hPD~ 35 (85)
+.+.++++. .-|+++||++.-..|+-.
T Consensus 4 ~el~~~~s~~~~~~vI~AaYrQVfgn~~~~~ 34 (148)
T 3nph_B 4 LELRSRSTEEEVDAVILAVYRQVLGNDHLMS 34 (148)
T ss_dssp -CBCSSSCSHHHHHHHHHHHHHHHSCSCCCT
T ss_pred ccccCCCCHHHHHHHHHHHHHHHhCCccccc
Confidence 345555543 448999999987766543
No 70
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=33.82 E-value=63 Score=18.66 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHH-HHHHHHHHHhcChHHH
Q 047025 24 YEKMAAKWNPDKYPDNKKEAEAKL-NRVCEAYEIVSDQVRC 63 (85)
Q Consensus 24 yr~l~~~~hPD~~~~~~~~a~~~f-~~i~~Ay~~L~d~~~R 63 (85)
-.++.++.|||..-+ ..+...+ ..|+..++-+.....+
T Consensus 42 IyKVLKQVhpd~gIS--skAm~ImnSfvnDiferIA~EAs~ 80 (126)
T 1tzy_B 42 VYKVLKQVHPDTGIS--SKAMGIMNSFVNDIFERIAGEASR 80 (126)
T ss_dssp HHHHHHHHCTTCEEC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788899997655 3333222 2345555555444333
No 71
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=33.35 E-value=17 Score=18.97 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 14 NASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
..+...+.+.|-.+... +|+..-+ |++|-+.|.-..+|+.||
T Consensus 9 ~~SL~~lt~kFi~l~~~-~~~~~i~-----------l~~aa~~L~v~~kRRiYD 50 (76)
T 1cf7_A 9 EKSLGLLTTKFVSLLQE-AKDGVLD-----------LKLAADTLAVRQKRRIYD 50 (76)
T ss_dssp TTCHHHHHHHHHHHHHH-SSTTEEE-----------HHHHHHHTTTCCTHHHHH
T ss_pred cCcHHHHHHHHHHHHHh-CCCCcCc-----------HHHHHHHhCCccceehhh
Confidence 44677778888887653 4544333 667777776436889998
No 72
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=54 Score=16.86 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+...+ ..+..+.|.+.|..|++..+..
T Consensus 28 ~~~r~~~k~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK~~ 66 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN----FAEFSKKCSERWKTMSGKEKSK 66 (86)
T ss_dssp HHHHHHHHHHCTTSCCC----HHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc----HHHHHHHHHHHHHhCCHHHHHH
Confidence 44555566778886542 2467888999999998655433
No 73
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=32.89 E-value=72 Score=18.32 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHHHhcC
Q 047025 16 SCDDLKKAYEKMAAKWNPDKYPD-NKKEAEAKLNRVCEAYEIVSD 59 (85)
Q Consensus 16 ~~~~Ik~ayr~l~~~~hPD~~~~-~~~~a~~~f~~i~~Ay~~L~d 59 (85)
+.+-|..+..--.+..|||.... ++...-+....|..-|.+|..
T Consensus 20 DLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~ 64 (123)
T 4aj5_K 20 DLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYA 64 (123)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677889998532 334555666677777766643
No 74
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=32.38 E-value=32 Score=18.62 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.5
Q ss_pred CCCchhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Q 047025 2 GADYYKILGVDRNASCDDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hPD 34 (85)
+++.|.||=|+...+.++|++-.+++--++.-|
T Consensus 47 gT~Sy~v~FLd~~~~ieeIk~eL~~~~a~lN~d 79 (88)
T 1iqo_A 47 GTQSNHVLFLSSYNSVDEIRKELEEAGAKINHT 79 (88)
T ss_dssp TTTCCEEEECSCCCSCHHHHHHHHHHHHCSSCC
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHcCcccccc
Confidence 567888999999999999999988876555443
No 75
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=32.12 E-value=49 Score=16.16 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 23 AYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 23 ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
..|..++.-||+...+ ..+..+.|.+.|..|++..+..
T Consensus 15 ~~r~~~~~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK~~ 52 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN----FSEFSKKCSERWKTMSAKEKGK 52 (71)
T ss_dssp HHHHHHHHHCTTCCCC----HHHHHHHHHHHHHTCCTTTSHH
T ss_pred HHHHHHHHHCCCCCCc----HHHHHHHHHHHHhhCCHHHHHH
Confidence 3455556678986542 2467888999999998765443
No 76
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=31.98 E-value=48 Score=16.41 Aligned_cols=20 Identities=0% Similarity=-0.011 Sum_probs=17.1
Q ss_pred cCCCCCCCHHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l~ 28 (85)
=+|+.+++.++|++.+.+..
T Consensus 12 ~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 12 GNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp ESCCTTCCHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHh
Confidence 37899999999999988774
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=30.51 E-value=37 Score=16.40 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.8
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=+|+++.+.++|+..+.+.
T Consensus 5 ~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTT
T ss_pred ecCCCCCCHHHHHHHHHhc
Confidence 3789999999999887664
No 78
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=29.58 E-value=30 Score=20.72 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=18.6
Q ss_pred cCCCCCCCHHH----HHHHHHHHHHHhCCCC
Q 047025 9 LGVDRNASCDD----LKKAYEKMAAKWNPDK 35 (85)
Q Consensus 9 Lgl~~~a~~~~----Ik~ayr~l~~~~hPD~ 35 (85)
+.+.++.+.++ |+++||++.-..|+-.
T Consensus 9 ~e~~p~~s~~~~~~vI~AaYRQVfgn~~~~~ 39 (154)
T 3pru_C 9 VELRPDFSLDDAKMVIRAVYRQVLGNDYIMD 39 (154)
T ss_dssp SBCCTTCCHHHHHHHHHHHHHHHTTSCCCCG
T ss_pred eeecCCCCHHHHHHHHHHHHHHHhCCccccc
Confidence 45566665544 8999999987766543
No 79
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=29.18 E-value=65 Score=16.67 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHHhcChH-HHhhhc
Q 047025 14 NASCDDLKKAYEKMAAKWNPDKYPDN-KKEAEAKLNRVCEAYEIVSDQV-RCKLQK 67 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~-~R~~Yd 67 (85)
..-...++..++.+.+...|...... =..+...|..-. +|..+.+.. ++.+|+
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFe 59 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFK 59 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHH
Confidence 34566788999999888877665442 234444444444 788886654 444444
No 80
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=28.42 E-value=8.1 Score=22.02 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhc
Q 047025 46 KLNRVCEAYEIVS 58 (85)
Q Consensus 46 ~f~~i~~Ay~~L~ 58 (85)
.+..|.+|.+-|.
T Consensus 64 aY~~lk~a~~~L~ 76 (132)
T 1hkq_A 64 AYAALDDAATKLF 76 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4455555555554
No 81
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=28.27 E-value=61 Score=16.03 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
+..|..++.-||+.. ..+..+.|.+.|..|
T Consensus 16 ~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 16 NDTRESIKRENPGIK------VTEIAKKGGEMWKEL 45 (73)
T ss_dssp HHHHHHHHHHSTTCC------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCCC------HHHHHHHHHHHHHhh
Confidence 345566667788754 246778888888888
No 82
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=28.13 E-value=30 Score=18.28 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=16.4
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=+|++.++.++|++.+.+.
T Consensus 15 ~nL~~~~tee~L~~~F~~~ 33 (95)
T 2lkz_A 15 RNIAPHTVVDSIMTALSPY 33 (95)
T ss_dssp ESCCTTCCHHHHHHHSTTT
T ss_pred eCCCCcCCHHHHHHHHHhh
Confidence 3899999999999998764
No 83
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=27.49 E-value=42 Score=17.64 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=16.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 24 V~nLp~~~te~~L~~~F~~~ 43 (99)
T 4fxv_A 24 VNYLPQNMTQDELRSLFSSI 43 (99)
T ss_dssp EESCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34799999999999988764
No 84
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=27.20 E-value=16 Score=16.64 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=8.3
Q ss_pred CchhhcCCCCC
Q 047025 4 DYYKILGVDRN 14 (85)
Q Consensus 4 d~y~iLgl~~~ 14 (85)
-||+||.++.-
T Consensus 13 aFYevLh~~nL 23 (38)
T 1zda_A 13 RFYEALHDPNL 23 (38)
T ss_dssp HHHHHHSCSSS
T ss_pred HHHHHHcCCCC
Confidence 47999988763
No 85
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=27.16 E-value=67 Score=19.74 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|.-++.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 22 ~~~r~~~k~~~P~~~------~~eisk~lge~Wk~Ls~~EK~~ 58 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK------TTELIRRIAQRWRELPDSKKKI 58 (214)
T ss_dssp HHHHHHHHHHCTTSC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCCCCC------HHHHHHHHHHHHHccCHHhhhH
Confidence 445556677788764 3577788888888888665544
No 86
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.95 E-value=48 Score=18.15 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=18.7
Q ss_pred hhhcCCCC---CCCHHHHHHHHHHHHH
Q 047025 6 YKILGVDR---NASCDDLKKAYEKMAA 29 (85)
Q Consensus 6 y~iLgl~~---~a~~~~Ik~ayr~l~~ 29 (85)
|.+.||.. ..+.+++.+++++++.
T Consensus 24 FrLaGi~~~~~~~~~ee~~~~~~~l~~ 50 (102)
T 2i4r_A 24 FMLAGISDIYEVTSDEEIVKAVEDVLK 50 (102)
T ss_dssp HHHTTCCCEEECCSHHHHHHHHHHHHH
T ss_pred HHHcCCCcccCCCCHHHHHHHHHHHhh
Confidence 66778874 3478889999999876
No 87
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.37 E-value=37 Score=18.65 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=22.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHh
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIV 57 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L 57 (85)
+||+++++-..-+.++.+++...... ....+.|..+.+.++-|
T Consensus 50 ~lgiS~~tV~~~l~ra~~kLr~~l~~-------~~~~~~~~~~~~~~~~~ 92 (113)
T 1xsv_A 50 TFNVSRQAVYDNIRRTGDLVEDYEKK-------LELYQKFEQRREIYDEM 92 (113)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHHHHH-------HhHHhHHHHHHHHHHHH
Confidence 45665554444455555555433321 22345666666666655
No 88
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=26.33 E-value=13 Score=15.31 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=6.6
Q ss_pred chhhcCCCC
Q 047025 5 YYKILGVDR 13 (85)
Q Consensus 5 ~y~iLgl~~ 13 (85)
+|+|+|+..
T Consensus 5 FyEIFGtG~ 13 (26)
T 2xpn_B 5 FFEIFGTGE 13 (26)
T ss_pred EEEEecCCc
Confidence 688888754
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.09 E-value=61 Score=16.52 Aligned_cols=20 Identities=10% Similarity=0.208 Sum_probs=16.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|+..+.+.
T Consensus 14 V~nLp~~~t~~~l~~~F~~~ 33 (99)
T 2div_A 14 MGDLEPYMDENFISRAFATM 33 (99)
T ss_dssp ECSCCTTCCHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHh
Confidence 44789999999999988765
No 90
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.02 E-value=69 Score=16.04 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|+..+.+.
T Consensus 14 V~nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERR 33 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHcC
Confidence 34789999999999888765
No 91
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=25.72 E-value=67 Score=16.46 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.6
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|+..+.+.
T Consensus 5 V~nLp~~~t~~~l~~~F~~~ 24 (101)
T 2hvz_A 5 VGNLGTGAGKGELERAFSYY 24 (101)
T ss_dssp EECCCSSCSHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999988765
No 92
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=25.71 E-value=86 Score=17.97 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 25 EKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 25 r~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+.-+..-||+.. ..+..+.|.+.|..|++..+..
T Consensus 20 ~~ki~~~~P~~~------~~eisk~lg~~Wk~ls~~eK~~ 53 (159)
T 2gzk_A 20 RRKMALENPRMR------NSEISKQLGYQWKMLTEAEKWP 53 (159)
T ss_dssp HHHHHHHCSSCC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHCCCCC------HHHHHHHHHHHHHHhhHHHhcc
Confidence 344456789843 2467788888888888665433
No 93
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=25.46 E-value=72 Score=19.96 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 23 AYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 23 ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
..|.-.+.-||+.. ..+..+.|.+.|..|++..+..
T Consensus 55 e~r~~~k~~~P~~~------~~eisk~lge~Wk~Ls~~EK~~ 90 (238)
T 3tmm_A 55 EQLPIFKAQNPDAK------TTELIRRIAQRWRELPDSKKKI 90 (238)
T ss_dssp HHHHHHHHHSTTSC------HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhCCCCC------HHHHHHHHHHHHHhCCHHHHHH
Confidence 34455566678654 3567788888899998665544
No 94
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.35 E-value=33 Score=19.38 Aligned_cols=21 Identities=10% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCCchhhcCCCCCCCHHHHHH
Q 047025 2 GADYYKILGVDRNASCDDLKK 22 (85)
Q Consensus 2 ~~d~y~iLgl~~~a~~~~Ik~ 22 (85)
+.++|.||.++...+..+|-+
T Consensus 19 ~~ePftI~~~~~~STAkdvl~ 39 (110)
T 2bye_A 19 GPEPFTVFTINGGTKAKQLLQ 39 (110)
T ss_dssp SSSSSEEEECCTTCCHHHHHH
T ss_pred CCCCcEEEEecCCCcHHHHHH
Confidence 467899999999998887544
No 95
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.28 E-value=63 Score=16.64 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEK 26 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~ 26 (85)
|=+|+.+++.++|+..+.+
T Consensus 14 V~nLp~~~t~~~l~~~F~~ 32 (104)
T 2dhg_A 14 VGDLTPDVDDGMLYEFFVK 32 (104)
T ss_dssp EECCCTTCCHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 4489999999999999887
No 96
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.20 E-value=60 Score=16.36 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|+..+.+.
T Consensus 13 V~nLp~~~t~~~l~~~F~~~ 32 (93)
T 2cqh_A 13 IGNLSPAVTADDLRQLFGDR 32 (93)
T ss_dssp EECCCTTCCHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHc
Confidence 45899999999999887664
No 97
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=25.13 E-value=31 Score=18.74 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=18.2
Q ss_pred hhhcCCC---CCCCHHHHHHHHHHHHH
Q 047025 6 YKILGVD---RNASCDDLKKAYEKMAA 29 (85)
Q Consensus 6 y~iLgl~---~~a~~~~Ik~ayr~l~~ 29 (85)
|.+.|+. +-.+.+++.+++++++.
T Consensus 15 FrLaGi~~v~~v~~~ee~~~~~~~l~~ 41 (101)
T 2ov6_A 15 FRLAGISKVYETPDIPATESAVRSVLE 41 (101)
T ss_dssp HHHHTCCEEEECCSTTTHHHHHHHHHH
T ss_pred HHHcCCCceEecCCHHHHHHHHHHHhh
Confidence 6677877 34477889999999876
No 98
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=25.01 E-value=46 Score=13.49 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 047025 18 DDLKKAYEKMAAKWNPD 34 (85)
Q Consensus 18 ~~Ik~ayr~l~~~~hPD 34 (85)
...++.|+++.++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 34677788888888774
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=24.87 E-value=72 Score=16.47 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 18 V~nlp~~~t~~~l~~~F~~~ 37 (106)
T 2dgp_A 18 IGQIPRNLDEKDLKPLFEEF 37 (106)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34889999999999988876
No 100
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.85 E-value=73 Score=16.31 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.0
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|++.+.+.
T Consensus 17 v~nLp~~~t~~~l~~~f~~~ 36 (102)
T 1x5s_A 17 VGGLSFDTNEQSLEQVFSKY 36 (102)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 44889999999999988776
No 101
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=24.67 E-value=71 Score=16.37 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhC
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWN 32 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~h 32 (85)
|=+|+.+++.++|+..+.+.-....
T Consensus 22 V~nLp~~~t~~~l~~~F~~~G~v~~ 46 (101)
T 1fj7_A 22 IGNLNPNKSVAELKVAISELFAKND 46 (101)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhCCcce
Confidence 3489999999999999988765544
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.22 E-value=52 Score=16.23 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=15.9
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=||+...+.++|++.+.+.
T Consensus 17 V~~l~~~~t~~~l~~~f~~~ 36 (85)
T 2ytc_A 17 VGGLGDTITETDLRNHFYQF 36 (85)
T ss_dssp EECCTTTSCHHHHHHHHHTT
T ss_pred EcCCCCCCCHHHHHHHHHhC
Confidence 34889999999999877653
No 103
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=23.93 E-value=73 Score=17.28 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHhCC
Q 047025 14 NASCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hP 33 (85)
.=|.++||.+|..++++..-
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45899999999998876543
No 104
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.92 E-value=42 Score=16.16 Aligned_cols=19 Identities=11% Similarity=0.338 Sum_probs=15.4
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=||+.+++.++|++.+.+.
T Consensus 6 ~nlp~~~t~~~l~~~F~~~ 24 (77)
T 1uaw_A 6 GGLSWQTTQEGLREYFGQF 24 (77)
T ss_dssp ESCCSSCCSHHHHHHHTTT
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788999999999887654
No 105
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=23.73 E-value=77 Score=16.36 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 16 V~nl~~~~t~~~l~~~F~~~ 35 (103)
T 2dgu_A 16 VRNLANTVTEEILEKAFSQF 35 (103)
T ss_dssp EECCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999888765
No 106
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.52 E-value=84 Score=16.01 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 047025 14 NASCDDLKKAYEKMAAKWNPDK 35 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hPD~ 35 (85)
.++.++.+.+|+.|....+-+.
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~ 32 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPS 32 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHHHcCcCC
Confidence 4689999999999999876443
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.16 E-value=78 Score=16.43 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
|=+|+...+.++|+..+.+.-
T Consensus 13 V~nLp~~~t~~~l~~~f~~~G 33 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVT 33 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHS
T ss_pred EeCCCCcCCHHHHHHHHHHhc
Confidence 447899999999999888763
No 108
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=23.11 E-value=64 Score=16.32 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcC
Q 047025 45 AKLNRVCEAYEIVSD 59 (85)
Q Consensus 45 ~~f~~i~~Ay~~L~d 59 (85)
...+.|++||+.|.+
T Consensus 22 ~R~~~iN~af~~LR~ 36 (68)
T 1mdy_A 22 RRLSKVNEAFETLKR 36 (68)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 467899999999976
No 109
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.08 E-value=84 Score=17.13 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=22.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHhC
Q 047025 8 ILGVDRNASCDDLKKAYEKMAAKWN 32 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~~~~h 32 (85)
|-+|+..++.++|+.+-+++...|=
T Consensus 14 V~NL~~~~~~~~lk~~L~~lF~~yG 38 (96)
T 2diu_A 14 VYNLPANKDGKSVSNRLRRLSDNCG 38 (96)
T ss_dssp EESCCTTSCHHHHHHHHHHHHHTTT
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHcC
Confidence 6689999999999999999988883
No 110
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=23.03 E-value=14 Score=18.14 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=15.5
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCC
Q 047025 4 DYYKILGVDRNASCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 4 d~y~iLgl~~~a~~~~Ik~ayr~l~~~~hP 33 (85)
.||+||.++.-.. +=|.-|..- ++-+|
T Consensus 8 aFYeil~lp~lte--~qrng~i~s-lkddP 34 (54)
T 1dee_G 8 AFYEILNMPNLNE--AQRNGFIQS-LKDDP 34 (54)
T ss_dssp HHHHHHHCSSSCH--HHHHHHHHH-HHHCG
T ss_pred HHHHHHcCCCcch--hhhcccccc-cccCc
Confidence 5899999976432 223444433 44555
No 111
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=22.78 E-value=66 Score=15.85 Aligned_cols=20 Identities=5% Similarity=0.189 Sum_probs=16.2
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 11 v~nlp~~~t~~~l~~~F~~~ 30 (87)
T 3bs9_A 11 VGDLSPEITTAAIAAAFAPF 30 (87)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999888654
No 112
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.57 E-value=79 Score=16.23 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=17.0
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|++.+.+.
T Consensus 20 V~nlp~~~t~~~l~~~F~~~ 39 (103)
T 2cqi_A 20 VGNLSRDVTEVLILQLFSQI 39 (103)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCccCCHHHHHHHHHhc
Confidence 44889999999999988776
No 113
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=22.55 E-value=60 Score=16.26 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.3
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|+..+.+.
T Consensus 13 V~nlp~~~t~~~l~~~f~~~ 32 (92)
T 2dgv_A 13 VRNLPFDFTWKMLKDKFNEC 32 (92)
T ss_dssp ECSCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999888764
No 114
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.49 E-value=67 Score=15.65 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.1
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+.+.++|+..+.+.
T Consensus 6 V~nlp~~~t~~~l~~~f~~~ 25 (83)
T 3md1_A 6 VGDLNVNVDDETLRNAFKDF 25 (83)
T ss_dssp EECCCTTCCHHHHHHHHTTS
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999887654
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.44 E-value=62 Score=16.23 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.4
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=||+..++.++|++.+...
T Consensus 15 v~nLp~~~t~~~l~~~F~~~ 34 (91)
T 2dgw_A 15 LRGAPFNVTEKNVMEFLAPL 34 (91)
T ss_dssp EECCCSSCCHHHHHHHHTTS
T ss_pred EECCCCCCCHHHHHHHHhhC
Confidence 45899999999999887654
No 116
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=22.42 E-value=49 Score=16.30 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcC
Q 047025 45 AKLNRVCEAYEIVSD 59 (85)
Q Consensus 45 ~~f~~i~~Ay~~L~d 59 (85)
...+.|+.||+.|.+
T Consensus 12 ~R~~~iN~af~~LR~ 26 (60)
T 2ql2_B 12 NRMHGLNAALDNLRK 26 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999999964
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=21.98 E-value=70 Score=18.08 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHHHHHHhcChHHHhhhc
Q 047025 22 KAYEKMAAKWNPDKY-PDNKKEAEAKLNRVCEAYEIVSDQVRCKLQK 67 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~-~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd 67 (85)
+.++.++........ ++........+...-.+|+.++...++...+
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~~~~~e~~~l~~ 110 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDSLSPEEHRRLEK 110 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHHCCHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHCcCHHHHhhHHH
Confidence 466677666654332 2222344455666677777777666665543
No 118
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...
Probab=21.94 E-value=90 Score=18.44 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=20.7
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHhCC
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~~~hP 33 (85)
|.|.+.++..+..+++.+.++....|..
T Consensus 17 Y~I~n~t~~l~~~~v~~ai~~A~~~Ws~ 44 (168)
T 830c_A 17 YRIVNYTPDMTHSEVEKAFKKAFKVWSD 44 (168)
T ss_dssp EEECSCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6677777777888888887777777654
No 119
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M
Probab=21.89 E-value=90 Score=18.75 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=16.4
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHh
Q 047025 6 YKILGVDRNASCDDLKKAYEKMAAKW 31 (85)
Q Consensus 6 y~iLgl~~~a~~~~Ik~ayr~l~~~~ 31 (85)
|.|.+.++..+..+++.+.++....|
T Consensus 15 Y~i~n~t~~l~~~~v~~ai~~Af~~W 40 (181)
T 3ma2_D 15 FCIQNYTPKVGEYATYEAIRKAFRVW 40 (181)
T ss_dssp EEECCCCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 56666666666666666666555544
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.85 E-value=76 Score=16.18 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|+..+.+.
T Consensus 24 V~nL~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 24 VGNLPRDARVSDLKRALREL 43 (97)
T ss_dssp EECCCTTCCHHHHHHHHHHT
T ss_pred EeCCCCcCcHHHHHHHHHhc
Confidence 44789999999999888765
No 121
>3k6g_D Telomeric repeat-binding factor 2; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=21.77 E-value=67 Score=14.78 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHHHHHHhcC
Q 047025 48 NRVCEAYEIVSD 59 (85)
Q Consensus 48 ~~i~~Ay~~L~d 59 (85)
..+.+|+.+|++
T Consensus 12 ~tLk~AFK~Ls~ 23 (42)
T 3k6g_D 12 MTLKAAFKTLSG 23 (42)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 446667777765
No 122
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.52 E-value=63 Score=16.31 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|++.+.+.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~ 29 (96)
T 1x5t_A 10 IGNLDPEIDEKLLYDTFSAF 29 (96)
T ss_dssp EECCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44889999999999988765
No 123
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=21.51 E-value=1.5e+02 Score=18.04 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHH-HHHHHHHHHHhcChH
Q 047025 23 AYEKMAAKWNPDKYPDNKKEAEAK-LNRVCEAYEIVSDQV 61 (85)
Q Consensus 23 ayr~l~~~~hPD~~~~~~~~a~~~-f~~i~~Ay~~L~d~~ 61 (85)
.-++..++.|||..-+ ..+... -..++.+++.|....
T Consensus 8 yi~kvLkqv~p~~~iS--~~Am~~m~s~v~di~~rIa~eA 45 (192)
T 2jss_A 8 YIYKVLKQTHPDTGIS--QKSMSILNSFVNDIFERIATEA 45 (192)
T ss_dssp HHHHHHHHHCSSCCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899998765 333332 223444555554443
No 124
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=21.35 E-value=89 Score=17.00 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHhCC
Q 047025 14 NASCDDLKKAYEKMAAKWNP 33 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~hP 33 (85)
.-+.++||.+|-.++.+.-.
T Consensus 66 ~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 66 KRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45899999999988876533
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.33 E-value=67 Score=16.18 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=15.8
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|++.+.+.
T Consensus 15 V~nLp~~~t~~~l~~~F~~~ 34 (92)
T 2dgt_A 15 VGNISPTCTNQELRAKFEEY 34 (92)
T ss_dssp EESCCSSCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 34789999999999877653
No 126
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=21.22 E-value=55 Score=16.64 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHhcChHHHh
Q 047025 22 KAYEKMAAKWNPDKYPDNKKEAEAKLNRVCEAYEIVSDQVRCK 64 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 64 (85)
+..|..++.-||+...+. .+..+.|.+.|..|++..+..
T Consensus 20 ~~~r~~~~~~~p~~~~~~----~eisk~lg~~Wk~ls~~eK~~ 58 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNF----SEFSKKCSERWKTMSAKEKGK 58 (83)
T ss_dssp HHHHHHHTTSCTTTCCCS----SSSHHHHHHHHTTSCTTHHHH
T ss_pred HHHHHHHHHHCCCCCCcH----HHHHHHHHHHHHhCCHHHHHH
Confidence 344555566688764310 245667888888888765443
No 127
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=21.22 E-value=73 Score=16.21 Aligned_cols=20 Identities=5% Similarity=0.253 Sum_probs=16.2
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.|.+.
T Consensus 16 V~~Lp~~~te~~L~~~F~~~ 35 (89)
T 3d2w_A 16 VGRCTEDMTAEELQQFFCQY 35 (89)
T ss_dssp EESCCTTCCHHHHHHHHTTT
T ss_pred EeCCCCCCCHHHHHHHHhcc
Confidence 34789999999999888654
No 128
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=21.15 E-value=1.5e+02 Score=18.00 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCCCCC
Q 047025 22 KAYEKMAAKWNPDKYPD 38 (85)
Q Consensus 22 ~ayr~l~~~~hPD~~~~ 38 (85)
-+.-+..+..||+++|.
T Consensus 140 valARv~K~l~Pernp~ 156 (171)
T 1r4v_A 140 LMHADVIKKATGERKPS 156 (171)
T ss_dssp HHHHHHHHHHCCCSSCC
T ss_pred HHHHHHHHHhCCCCCCC
Confidence 35567788899998776
No 129
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.12 E-value=74 Score=15.72 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.3
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 11 V~nlp~~~t~~~l~~~F~~~ 30 (89)
T 3ucg_A 11 VGNVDYGATAEELEAHFHGC 30 (89)
T ss_dssp EESCCTTCCHHHHHHHHGGG
T ss_pred EeCCCCCCCHHHHHHHHHhC
Confidence 34789999999999888754
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.84 E-value=70 Score=16.02 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=15.3
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=+|+.+.+.++|+..+.+.
T Consensus 14 ~nlp~~~t~~~l~~~F~~~ 32 (90)
T 2dnq_A 14 GNLPREATEQEIRSLFEQY 32 (90)
T ss_dssp ESCCSSCCHHHHHHHHHTS
T ss_pred eCCCCCCCHHHHHHHHHhC
Confidence 3788999999998877653
No 131
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=20.83 E-value=1e+02 Score=17.63 Aligned_cols=18 Identities=33% Similarity=0.411 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 047025 14 NASCDDLKKAYEKMAAKW 31 (85)
Q Consensus 14 ~a~~~~Ik~ayr~l~~~~ 31 (85)
+-|.+|+++++++++.+.
T Consensus 16 ~l~d~el~~rar~LA~kI 33 (121)
T 3kp1_E 16 NLSDEELQTRFWEMAEKI 33 (121)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHH
Confidence 458999999999998764
No 132
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.82 E-value=67 Score=16.31 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.3
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+++.++|++.+.+.
T Consensus 10 V~nLp~~~t~~~l~~~F~~~ 29 (98)
T 2cpf_A 10 IKNLNFSTTEETLKGVFSKV 29 (98)
T ss_dssp EESCCTTCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44789999999999888654
No 133
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.82 E-value=63 Score=16.47 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=16.2
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+.+.+.++|++.+.+.
T Consensus 22 V~nlp~~~t~~~l~~~F~~~ 41 (97)
T 1why_A 22 VGGLGPNTSLAALAREFDRF 41 (97)
T ss_dssp EECCCSSCCHHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHHHhc
Confidence 44789999999999887654
No 134
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.71 E-value=65 Score=16.18 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.5
Q ss_pred hcCCCCCCCHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l 27 (85)
|=+|+..++.++|++.+.+.
T Consensus 20 v~nlp~~~t~~~l~~~f~~~ 39 (95)
T 2cqc_A 20 VFGLSLYTTERDLREVFSKY 39 (95)
T ss_dssp EESCCSSCCHHHHHHHHHTT
T ss_pred EECCCCCCCHHHHHHHHHhc
Confidence 45889999999999888764
No 135
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=20.53 E-value=92 Score=16.89 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.6
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 047025 8 ILGVDRNASCDDLKKAYEKMA 28 (85)
Q Consensus 8 iLgl~~~a~~~~Ik~ayr~l~ 28 (85)
|=+|+.+++.++|+..+.+.-
T Consensus 33 VgnLp~~~te~dL~~~F~~~G 53 (111)
T 2jvr_A 33 MKNLPEGCSWQDLKDLARENS 53 (111)
T ss_dssp EECSSCCCCHHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHHHhC
Confidence 348899999999999888764
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=20.08 E-value=72 Score=16.04 Aligned_cols=19 Identities=16% Similarity=0.157 Sum_probs=15.7
Q ss_pred cCCCCCCCHHHHHHHHHHH
Q 047025 9 LGVDRNASCDDLKKAYEKM 27 (85)
Q Consensus 9 Lgl~~~a~~~~Ik~ayr~l 27 (85)
=+|+.+++.++|+..+.+.
T Consensus 7 ~nL~~~~t~~~l~~~F~~~ 25 (90)
T 3p5t_L 7 GNLTWWTTDEDLTEAVHSL 25 (90)
T ss_dssp ESCCTTCCHHHHHHHHHTT
T ss_pred eCCCCCCCHHHHHHHHHHh
Confidence 3789999999999887654
Done!