BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047026
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHN|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|2XHN|B Chain B, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Active Site Mutant
pdb|3NJV|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a
Substrate Complex
Length = 508
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 337 QFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPL 395
Q+W T S G+FT + PG Y + + G+Y + + VT+SAGS T N++ +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTM----VYYQGEYAVATSSVTVSAGSTTTK-NIS-GSV 336
Query: 396 RNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFF 455
+ G T+++IG D G F N+ + R + R + P + +
Sbjct: 337 KTGTTIFKIGEWDGQPTG--------------FRNAANQLRMHPSDSRMSSWGPLT---Y 379
Query: 456 TVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-SATRSDLE 514
TVG + D+ A K + TIKF S G LR+ S +
Sbjct: 380 TVG-SSALTDFPMAVF-------KSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQ 431
Query: 515 IFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSR 572
+N G NL V R GL +++ + + S ++ G N++ + +
Sbjct: 432 ATINSY-TGSAPAAPTNLD-SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGS 489
Query: 573 SGD 575
SGD
Sbjct: 490 SGD 492
>pdb|3NJX|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant
H210a
Length = 508
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 337 QFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPL 395
Q+W T S G+FT + PG Y + + G+Y + + VT+SAGS T N++ +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTM----VYYQGEYAVATSSVTVSAGSTTTK-NIS-GSV 336
Query: 396 RNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFF 455
+ G T+++IG D G F N+ + R + R + P + +
Sbjct: 337 KTGTTIFKIGEWDGQPTG--------------FRNAANQLRMHPSDSRMSSWGPLT---Y 379
Query: 456 TVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-SATRSDLE 514
TVG + D+ A K + TIKF S G LR+ S +
Sbjct: 380 TVG-SSALTDFPMAVF-------KSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQ 431
Query: 515 IFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSR 572
+N G NL V R GL +++ + + S ++ G N++ + +
Sbjct: 432 ATINSY-TGSAPAAPTNLD-SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGS 489
Query: 573 SGD 575
SGD
Sbjct: 490 SGD 492
>pdb|1NKG|A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus
Length = 508
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 99/243 (40%), Gaps = 37/243 (15%)
Query: 337 QFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPL 395
Q+W T S G+FT + PG Y + + G+Y + + VT+SAGS T N++ +
Sbjct: 283 QYWTYTSSSGSFTSPAMKPGTYTM----VYYQGEYAVATSSVTVSAGSTTTK-NIS-GSV 336
Query: 396 RNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFF 455
+ G T+++IG D G F N+ + R + R + P + +
Sbjct: 337 KTGTTIFKIGEWDGQPTG--------------FRNAANQLRMHPSDSRMSSWGPLT---Y 379
Query: 456 TVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-SATRSDLE 514
TVG + D+ A K + TIKF S G LR+ S +
Sbjct: 380 TVG-SSALTDFPMAVF-------KSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQ 431
Query: 515 IFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSR 572
+N G NL V R GL +++ + + S ++ G N++ + +
Sbjct: 432 ATINSY-TGSAPAAPTNLD-SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGS 489
Query: 573 SGD 575
SGD
Sbjct: 490 SGD 492
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 212 PTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLN--------------STSDASK 257
P + + H Y N AH+ EGEA R +F P FVY S ++
Sbjct: 278 PWLIVLVHAPLY--NSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNV 335
Query: 258 AYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATG 297
AYN+ ++AK + E+A P Y+T + G++ G
Sbjct: 336 AYNI-VNAKCTPVSDESA--------PVYITIGDGGNSEG 366
>pdb|2YA4|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA4|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
pdb|2YA5|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA5|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Sialic Acid
pdb|2YA6|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA6|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Dana
pdb|2YA7|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA7|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Zanamivir
pdb|2YA8|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
pdb|2YA8|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
In Complex With Oseltamivir Carboxylate
Length = 493
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 197 RNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDAS 256
RNG P K + + P L GT ++A E +G I + + + D
Sbjct: 35 RNGNPNKDGIKSYRIPALLKTDKGT------LIAGADERRLHSSDWGDIGMVIRRSEDNG 88
Query: 257 KAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDK-----FVSSSLI 311
K + + R +A+ P + SP + VQD F +
Sbjct: 89 KTWGDRVTITNLRDNPKASDPS--IGSPVNIDM---------VLVQDPETKRIFSIYDMF 137
Query: 312 PAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVK 351
P G+SS + E + + K YQ + KG +T++
Sbjct: 138 PEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIR 177
>pdb|3H72|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H72|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Nana
pdb|3H73|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
pdb|3H73|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
Neuraminidase A Precursor (Nana) In Complex With Dana
Length = 477
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 197 RNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDAS 256
RNG P K + + P L GT ++A E +G I + + + D
Sbjct: 18 RNGKPNKDGIKSYRIPALLKTDKGT------LIAGADERRLHSSDWGDIGMVIRRSEDNG 71
Query: 257 KAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDK-----FVSSSLI 311
K + + R +A+ P + SP + VQD F +
Sbjct: 72 KTWGDRVTITNLRDNPKASDPS--IGSPVNIDM---------VLVQDPETKRIFSIYDMF 120
Query: 312 PAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVK 351
P G+SS + E + + K YQ + KG +T++
Sbjct: 121 PEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIR 160
>pdb|2VVZ|A Chain A, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
pdb|2VVZ|B Chain B, Structure Of The Catalytic Domain Of Streptococcus
Pneumoniae Sialidase Nana
Length = 504
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 197 RNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDAS 256
RNG P K + + P L GT ++A E +G I + + + D
Sbjct: 16 RNGKPNKDGIKSYRIPALLKTDKGT------LIAGADERRLHSSDWGDIGMVIRRSEDNG 69
Query: 257 KAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDK-----FVSSSLI 311
K + + R +A+ P + SP + VQD F +
Sbjct: 70 KTWGDRVTITNLRDNPKASDPS--IGSPVNIDM---------VLVQDPETKRIFSIYDMF 118
Query: 312 PAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVK 351
P G+SS + E + + K YQ + KG +T++
Sbjct: 119 PEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIR 158
>pdb|2W20|A Chain A, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
pdb|2W20|B Chain B, Structure Of The Catalytic Domain Of The Native Nana
Sialidase From Streptococcus Pneumoniae
Length = 471
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 197 RNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDAS 256
RNG P K + + P L GT ++A E +G I + + + D
Sbjct: 14 RNGKPNKDGIKSYRIPALLKTDKGT------LIAGADERRLHSSDWGDIGMVIRRSEDNG 67
Query: 257 KAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATGRFFVQDK-----FVSSSLI 311
K + + R +A+ P + SP + VQD F +
Sbjct: 68 KTWGDRVTITNLRDNPKASDPS--IGSPVNIDM---------VLVQDPETKRIFSIYDMF 116
Query: 312 PAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVK 351
P G+SS + E + + K YQ + KG +T++
Sbjct: 117 PEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIR 156
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 460 NDPKKDWFFAHVDRRGPDNKYLPTTWTIK 488
NDP ++ A ++R G DN+Y+ T T K
Sbjct: 66 NDPFGEYLLAELERLGVDNQYVATDQTFK 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,867,576
Number of Sequences: 62578
Number of extensions: 906588
Number of successful extensions: 1677
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1674
Number of HSP's gapped (non-prelim): 12
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)