BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047026
(596 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1
Length = 660
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 136/540 (25%), Positives = 226/540 (41%), Gaps = 79/540 (14%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F+ D + ++ T ++ + PL
Sbjct: 123 WFLRDGETGLHMFSRLAYYNETTPFLR--NLQEFRTLFRPNTDLWTHL--TSSELQTAPL 178
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGW-----I 179
P D GKQ++V ++ N D E KY +S +D +HG
Sbjct: 179 PSD--EAVGKQVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNAWRDNNVHGLYADGST 236
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
S+G G W++ + + GGP +LTV G Y N I++ H EG
Sbjct: 237 SNGTTFGAWLVMNTKDTYYGGPLHSDLTVD----------GIVY--NYIVSNHHGEGTPN 284
Query: 236 --EAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YLT 288
+ + FGP F YL + +S L +A+ L + +W +F S Y+
Sbjct: 285 ITNGFDRTFGPQF-YLFNGGGSSSLNELRSEAES---LADPSWNVEFYDSIAKHVVGYVP 340
Query: 289 ANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNF 348
+++RGS G Q K + P + + + + YQ+WV+ D+ G F
Sbjct: 341 SSKRGSVQG----QIKLPRGATRPIAILTVDGQYFQDN---SVDPRSYQYWVEMDANGKF 393
Query: 349 TVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPD 408
+ +VV G Y L + G GDY+ + G +T N ++ P G VW +G PD
Sbjct: 394 QLDHVVEGKYRLTVYADGIFGDYVRDGVQV--RGRKTTRINDSWQPESAGVEVWRLGTPD 451
Query: 409 RTALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDW 466
+++ G ++ V +P + L+ PE +G +D D + +T+G +DP D+
Sbjct: 452 KSS-GEFLHGVARDPTHP----LHPPEYLIYWGAYDWQQDFPNGVN--YTIGSSDPATDF 504
Query: 467 FFAHVDRRG-----PDNKYLPT-TWTIKFHLDSI---IKGTYNLRLAIASATRSDLEIFV 517
H G PD +Y T W I F L + T L + +A A + V
Sbjct: 505 NTVHWSVFGPTPDNPDVEYDTTHDWAINFSLTKKQLQKRKTATLTIQLAGAKTASGNTDV 564
Query: 518 NYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSRSGDPV 577
D+ + NL +++ + + L L + SS +++ S + V+SR P
Sbjct: 565 YKPDEPY-----TNLALESYINQQE-EPLTMLIGFNQSSSCIVRSAVSCYQVRSRMTFPA 618
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE
PE=1 SV=1
Length = 578
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 195/474 (41%), Gaps = 75/474 (15%)
Query: 40 VINMSNDSVEVSFRSSYDPSIQSTKLPLSVDIRYILRSGVSGFHCYSIYERPPGCRAFDL 99
VI + D V +++ I L ++ I+ VSG + Y + G +
Sbjct: 101 VIKQTPDQVHLAY-------IDDQNGKLRLEYHLIMTRDVSGLYSYVVAANT-GSAPVTV 152
Query: 100 AQTRLAFKLRRDKFHYMAITDAKQRIMPLPEDLLPGRGKQLIVPESVLLVNPINPDLKGE 159
++ R ++ D + ++ +R PL D L K + E+ L PD G
Sbjct: 153 SELRNVYRF--DATRLDTLFNSIRRGTPLLYDELEQLPK--VQDETWRL-----PD--GS 201
Query: 160 VDDKYQYSMDNKDGGLHGWISSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFH 219
V KY ++ ++ G + +G G W++ S E+ +G KQ L VH L
Sbjct: 202 VYSKYDFAGYQRESRYWGVMGNG--YGAWMVPASGEYYSGDALKQELLVHQDAIILNYLT 259
Query: 220 GTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYD 279
G+H+ +++A + K++GP +Y+N +D L D ++ + A+WPY
Sbjct: 260 GSHFGTPDMVAQ----PGFEKLYGPWLLYINQGNDRE----LVADVSRRAEHERASWPYR 311
Query: 280 FVSSPYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFW 339
++ Y +R + +GR + A +A + L+S+ QT Y F
Sbjct: 312 WLDDARY--PRQRATVSGRLRTE----------APHATVVLNSSAENFDIQTTG--YLFS 357
Query: 340 VQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGP 399
+T+ G F++ NV PG Y L + G L G +T LG + + P
Sbjct: 358 ARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGLLAQQTVRVEGKKTRLGQID--ARQPAP 415
Query: 400 TVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGV 459
W IG DR A F + P +YR W T+V +D F +G
Sbjct: 416 LAWAIGQADRRADEFR------------FGDKPRQYR----WQ--TEV--PADLTFEIGK 455
Query: 460 NDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIASATRSDL 513
+ +KDW++A P +W I F+ + + Y L +AIA+A+ + +
Sbjct: 456 SRERKDWYYAQTQ---------PGSWHILFNTRT-PEQPYTLNIAIAAASNNGM 499
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB
PE=2 SV=2
Length = 660
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 117/484 (24%), Positives = 191/484 (39%), Gaps = 81/484 (16%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +GFH +S E P R +L + R F+ D + ++ +D + PL
Sbjct: 123 WFLRDGETGFHMFSRLAYYNETTPFLR--NLQELRTLFRPNTDLWTHLTSSDLQ--TAPL 178
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGW-----I 179
P D +Q++V ++ +N D E KY +S +D +HG
Sbjct: 179 PSD--EAIAEQIVVQDATWRLNNTPDDAYYQQFSEYFTKYTFSNHWRDNDVHGLYADGST 236
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
S G G W++ + + GGP +LTV I N I++ H EG
Sbjct: 237 SDGTTYGAWLVMNTKDTYYGGPLHSDLTVD------------GIIYNYIVSNHHGEGTPN 284
Query: 236 --EAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YLT 288
+ + FGP F N +S L + R L +W DF S Y+
Sbjct: 285 ITNGFDRTFGPQFYLFNGGGSSS----LEELRDEARSLASPSWNADFYDSIAKHVIGYVP 340
Query: 289 ANERGSATGRFFVQDKFVSS-SLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGN 347
+++RGS G + S +++ Y +SA +Q+W D G
Sbjct: 341 SSQRGSVKGTIKLPKNAKSPIAVLTVDGHYFQDNSAV--------PSSHQYWADIDKNGR 392
Query: 348 FTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFP 407
F++ VV G Y L + G GD+ +V + A T + T+ P G +W +G P
Sbjct: 393 FSIDRVVAGKYRLTVYADGIFGDFTRDGIV-VKARKSTSIKE-TWKPESAGTEIWRLGTP 450
Query: 408 DRTA----LGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPK 463
D+++ G +P + PE +G +D +D D + +G +DP
Sbjct: 451 DKSSGEFRHGAARDPTHPRH-------PPEYLIYWGAYDWQSDFPGGID--YMIGESDPA 501
Query: 464 KDWFFAHVDRRG--PDNKYLPTT----WTIKF-----HLDSIIKGTYNLRLAIASATRSD 512
D+ H G PDN + W I+F L + T ++LA A A +
Sbjct: 502 TDFNTVHWAVFGPTPDNPVAESNTTHDWRIRFDLSAKQLHARKTATLTIQLAGAKAASGN 561
Query: 513 LEIF 516
+++
Sbjct: 562 TDVY 565
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1
Length = 706
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 124/536 (23%), Positives = 223/536 (41%), Gaps = 79/536 (14%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F+ + + +++ ++ + PL
Sbjct: 124 WFLRDGETGLHTFSRLAYYNETTPYLR--NLQEFRTLFRPNTELWTHLSSSEVQ--TAPL 179
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGW-----I 179
P ++++V ++ N D + KY +S +D +HG
Sbjct: 180 PSK--KAVEEEVVVQDATWTFNNTPTDEYYVQFADYFTKYTFSNAWRDNSVHGMYADGST 237
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWR 239
S+G G W++ + + GGP +LTV G + H G + + +
Sbjct: 238 SNGSTFGAWLVMNTKDTYYGGPLHSDLTVD-GIVYNYLVSNHHGEGTPNITY-----GFD 291
Query: 240 KVFGPIFVYLNSTSDASKAYN-LWIDAKKQRLLQEAAWPYDFVSSPY-----YLTANERG 293
+ FGP + + N ++ + L DA+ L + +W DF S Y +++RG
Sbjct: 292 RTFGPQYYHFNGGKGSTASLQELKSDAET---LADPSWNVDFYDSIAKHVVGYTPSSQRG 348
Query: 294 SATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGW----QTESKDYQFWVQTDSKGNFT 349
S G+ + K A ++ +G + S YQ+W + D G+F+
Sbjct: 349 SVQGKIKL-----------PKGATRPIAVLTVDGQYFQDNSVNSSSYQYWAEIDDSGHFS 397
Query: 350 VKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDR 409
V +V G Y L + G GD++ V + AG +T + T+ G +W +G PD+
Sbjct: 398 VDHVKEGPYRLTVYADGIFGDFVRDG-VQVKAGKKTTIQE-TWEAESAGTEIWRLGTPDK 455
Query: 410 TALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWF 467
++ G + V +P + L+ PE +G +D +D P+ +T+G +DP D
Sbjct: 456 SS-GEFRHGVARDPTHP----LHPPEYLIYWGAYDWQSDF-PDGIN-YTIGTSDPATDLN 508
Query: 468 FAHVDRRGPDN-----KYLPT-TWTIKFHL--DSII---KGTYNLRLAIASATRSDLEIF 516
H GP +Y T WTI F L D + K T ++LA A A + +++
Sbjct: 509 TVHWSVFGPTPNDPRVEYDTTHDWTINFPLSEDDLAERSKATLTIQLAGAKAASGNTDVY 568
Query: 517 VNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSR 572
+ NL +++ + L L + SS +++ S + V+SR
Sbjct: 569 -------NASEPYTNLALESYINDQA-EPLTLLIGFNQSSSCIVRSAVSCYQVRSR 616
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglB PE=3 SV=1
Length = 663
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 214/532 (40%), Gaps = 71/532 (13%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F+ + + ++ ++A+ +P
Sbjct: 124 WFLRDGETGLHTFSRLAYYNETTPFLR--NLQEFRTLFRPNTELWTHLTSSEAQTAPLPS 181
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGWI----- 179
E + +++V ++ N D E KY +S +D +HG
Sbjct: 182 KEAI----ANEVVVQDATWRFNNTPNDAYYTQFSEYFTKYTFSNLWRDNSVHGLYADGTN 237
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAWR 239
S+G G W++ + + GGP +LTV G + H G + + +
Sbjct: 238 SNGTTYGAWLVMNTKDTYYGGPLHSDLTVD-GIVYNYLVSNHHGEGTPNITN-----GFD 291
Query: 240 KVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YLTANERGS 294
+ FGP + YL + SK+ +L + L + W DF S Y +++RGS
Sbjct: 292 RTFGPQY-YLFNGGKGSKS-SLEDLRSEAETLADPGWNADFYDSIAKHVIGYAPSSKRGS 349
Query: 295 ATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKGNFTVKNVV 354
G Q K S P + + E+ +Q+W + G F + +V
Sbjct: 350 VQG----QVKLPKGSTRPIAILTVDGQYFQDN---SVEASSHQYWAEMGQDGTFQLDHVK 402
Query: 355 PGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTA--- 411
G Y L + G GD++ V + AG T++ T+ G VW +G PD+++
Sbjct: 403 EGKYRLTVFADGIFGDFVHDG-VEVQAGKVTKVQE-TWEQESAGVEVWRLGTPDKSSGEF 460
Query: 412 LGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKKDWFFAHV 471
L PD P + L+ P+ + +G +D D + +T+G +DP D+ H
Sbjct: 461 LHGDAPD--PTHP----LHPPQHFIYWGAYDWQQDFPNGVN--YTIGSSDPAVDFNTVHW 512
Query: 472 DRRG-----PDNKYLPT-TWTIKFHLDSI-----IKGTYNLRLAIASATRSDLEIFVNYI 520
G PD +Y T WTI F LD T ++LA A + +++
Sbjct: 513 SVYGPTPANPDVEYDTTHDWTINFSLDKKQLQQRKTATLTIQLAGAKTAAGNTDVY---- 568
Query: 521 DQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFLVQSR 572
+ NL +++ + L L + SS +++ S + V+SR
Sbjct: 569 ---NATEPYANLALESYINEQK-EPLTLLVGFNQSSSCIVRSAVSCYQVRSR 616
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rglB PE=3 SV=1
Length = 658
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 143/580 (24%), Positives = 234/580 (40%), Gaps = 111/580 (19%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F R + + +T ++ + PL
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLR--NLQEFRTLF--RPNTQLWTHLTSSELQTAPL 179
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGWI----- 179
P KQ++V ++ N D E KY +S +D +HG
Sbjct: 180 PSK--NAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTN 237
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
S+G G W++ + GP +LTV G Y N I++ H EG
Sbjct: 238 SNGSTYGAWLVMNTK-----GPLHSDLTVD----------GIVY--NYIVSNHHGEGTPN 280
Query: 236 --EAWRKVFGPIFVYLNS-TSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YL 287
+ + FGP F N S +L +A K L + +W +F S Y+
Sbjct: 281 ITNGFDRTFGPQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYV 337
Query: 288 TANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESK----DYQFWVQTD 343
+++RGS GR + K A ++ +G + ++ YQ+W D
Sbjct: 338 PSSKRGSVDGRIKL-----------PKGASNPIAILTVDGQYFQDNSVVPSSYQYWTDID 386
Query: 344 SKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWE 403
+ G F + VV G Y L + G GD++ VT+ AG T + + G +W
Sbjct: 387 TSGRFRIDRVVEGKYRLTVYADGIFGDFVRDG-VTVRAGKTTTVKE-KWDAESAGKEIWR 444
Query: 404 IGFPDRTALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVND 461
+G PD+++ G + V +P + L+ PE +G +D +D D +T+G +D
Sbjct: 445 LGTPDKSS-GEFRHGVARDPTHP----LHPPEYLIYWGAYDWQSDFPKGID--YTIGSSD 497
Query: 462 PKKDWFFAHVDRRG--PDN---KYLPT-TWTIKF-----HLDSIIKGTYNLRLAIASATR 510
P D+ H G PDN +Y T W I F L + K T ++LA A
Sbjct: 498 PATDFNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTAS 557
Query: 511 SDL------EIFVNYIDQGHLVYQEMNLGM-------DNTVCRHGIHGLYQLFS-IHVSS 556
+ E ++N I + ++ Q+ L + + R + YQ+ S + +
Sbjct: 558 GNTDEYKASEPYINLIHESYINDQKEPLSFVIGFNQSSSCIVRSAV-SCYQVRSRMEFPA 616
Query: 557 LLLIKGDNSMFL-VQSRSGDPVCGVL-------YDYLRLE 588
L G+N++ L + + D +L YD LRLE
Sbjct: 617 DWLKVGENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3
SV=1
Length = 658
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 143/580 (24%), Positives = 234/580 (40%), Gaps = 111/580 (19%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F R + + +T ++ + PL
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLR--NLQEFRTLF--RPNTQLWTHLTSSELQTAPL 179
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGWI----- 179
P KQ++V ++ N D E KY +S +D +HG
Sbjct: 180 PSK--NAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTN 237
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
S+G G W++ + GP +LTV G Y N I++ H EG
Sbjct: 238 SNGSTYGAWLVMNTK-----GPLHSDLTVD----------GIVY--NYIVSNHHGEGTPN 280
Query: 236 --EAWRKVFGPIFVYLNS-TSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YL 287
+ + FGP F N S +L +A K L + +W +F S Y+
Sbjct: 281 ITNGFDRTFGPQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYV 337
Query: 288 TANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESK----DYQFWVQTD 343
+++RGS GR + K A ++ +G + ++ YQ+W D
Sbjct: 338 PSSKRGSVDGRIKL-----------PKGASNPIAILTVDGQYFQDNSVVPSSYQYWTDID 386
Query: 344 SKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWE 403
+ G F + VV G Y L + G GD++ VT+ AG T + + G +W
Sbjct: 387 TSGRFRIDRVVEGKYRLTVYADGIFGDFVRDG-VTVRAGKTTTVKE-KWDAESAGKEIWR 444
Query: 404 IGFPDRTALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVND 461
+G PD+++ G + V +P + L+ PE +G +D +D D +T+G +D
Sbjct: 445 LGTPDKSS-GEFRHGVARDPTHP----LHPPEYLIYWGAYDWQSDFPKGID--YTIGSSD 497
Query: 462 PKKDWFFAHVDRRG--PDN---KYLPT-TWTIKF-----HLDSIIKGTYNLRLAIASATR 510
P D+ H G PDN +Y T W I F L + K T ++LA A
Sbjct: 498 PATDFNTVHWSVFGPTPDNPNVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTAS 557
Query: 511 SDL------EIFVNYIDQGHLVYQEMNLGM-------DNTVCRHGIHGLYQLFS-IHVSS 556
+ E ++N I + ++ Q+ L + + R + YQ+ S + +
Sbjct: 558 GNTDEYKASEPYINLIHESYINDQKEPLSFVIGFNQSSSCIVRSAV-SCYQVRSRMEFPA 616
Query: 557 LLLIKGDNSMFL-VQSRSGDPVCGVL-------YDYLRLE 588
L G+N++ L + + D +L YD LRLE
Sbjct: 617 DWLKVGENTLTLHLPYNATDTETAILPATVYVQYDALRLE 656
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=rglB PE=3 SV=1
Length = 658
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 200/497 (40%), Gaps = 85/497 (17%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR G +G H +S E P R +L + R F R + + +T ++ + PL
Sbjct: 124 WFLRDGETGLHMFSRLAYYNETTPFLR--NLQEFRTLF--RPNTQLWTHLTSSELQTAPL 179
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPDLK----GEVDDKYQYSMDNKDGGLHGWI----- 179
P KQ++V ++ N D E KY +S +D +HG
Sbjct: 180 PSK--NAVSKQVVVQDATWRFNNTPDDAYYTQFSEYFTKYTFSNQWRDNDVHGLYGDGTN 237
Query: 180 SSGPIIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILA-HFQEG--- 235
S+G G W++ + GP +LTV G Y N I++ H EG
Sbjct: 238 SNGSTYGAWLVMNTK-----GPLHSDLTVD----------GIVY--NYIVSNHHGEGTPN 280
Query: 236 --EAWRKVFGPIFVYLNS-TSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPY-----YL 287
+ + FGP F N S +L +A K L + +W +F S Y+
Sbjct: 281 ITNGFDRTFGPQFYLFNGGKGSTSSLQDLRSEAAK---LADPSWNAEFYDSIAKHVVGYV 337
Query: 288 TANERGSATGRFFVQDKFVSS-SLIPAKYAYIGLSSARTEGGWQTESKDYQFWVQTDSKG 346
+++RGS GR + + +++ Y +S YQ+W D+ G
Sbjct: 338 PSSKRGSVDGRVKLPKGATNPIAILTVDGQYFQDNSVV--------PSSYQYWTDIDTSG 389
Query: 347 NFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGF 406
F + VV G Y L + G GD++ VT+ AG T + + G VW +G
Sbjct: 390 KFRIDRVVEGKYRLTVYADGIFGDFVRDG-VTVKAGKTTTVKE-KWDAESAGKEVWRLGT 447
Query: 407 PDRTALGCYVPDV--NPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFFTVGVNDPKK 464
PD+++ G + V +P + L+ PE +G +D +D+ D + +G +DP
Sbjct: 448 PDKSS-GEFRHGVARDPTHP----LHPPEYLIYWGAYDWQSDLPKGID--YRIGSSDPAT 500
Query: 465 DWFFAHVDRRG-----PDNKYLPT-TWTIKF-----HLDSIIKGTYNLRLAIASATRSDL 513
D+ H G PD +Y T W I F L + K T ++LA A +
Sbjct: 501 DFNTVHWSVFGPTPDNPDVEYNTTHDWKINFSLTKKQLRNSKKATLTIQLAGAKTASGNT 560
Query: 514 EIFVN---YIDQGHLVY 527
+++ YI+ H Y
Sbjct: 561 DVYNASEPYINLSHESY 577
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rglC PE=3 SV=1
Length = 1041
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 132/322 (40%), Gaps = 42/322 (13%)
Query: 163 KYQYSMDNKDGGLHGWISSGPI------IGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLA 216
KY + +D +HG S+G G W++ + E GGP +L V G
Sbjct: 213 KYTLTESWRDHDVHGHFSNGSTSGDGNTYGAWLVHNTRETYYGGPLHADLVVD-GIVYNY 271
Query: 217 MFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAW 276
+ G + N L H + + FGP + + NS + L DA + + A
Sbjct: 272 IVSGHYGAPNPNLTH-----GFDRTFGPQYYHFNSGGPGTTLEELRADAAQYASPEWNAE 326
Query: 277 PYDFVSS--PYYLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTESK 334
YD ++ P Y+ + R + G+ + AK I LS + K
Sbjct: 327 FYDSIAKHIPNYVPSTGRTTFRGKVNLPKG--------AKKPIIVLSENEQDFQLNVFKK 378
Query: 335 D-YQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYV 393
D Q+W + D G FT+ VV G Y + + G ++ + I + + T T+
Sbjct: 379 DSLQYWAEIDGSGAFTIPRVVKGTYRVTIYADEIFGWFIKDNVKVIGSNAHT----FTWK 434
Query: 394 PLRNGPTVWEIGFPDRTA---LGCYVPDVN-PMYVNKLFLNSPEKYRQY-GLWDRYTDVH 448
G +W IG PD+++ L Y PD + P+ PE+YR Y G +D +D
Sbjct: 435 EETAGKEIWRIGVPDKSSGEFLHGYAPDTSKPL--------QPEQYRIYWGKYDYPSDF- 485
Query: 449 PESDQFFTVGVNDPKKDWFFAH 470
PE + VG +DP KD + H
Sbjct: 486 PEGVNYH-VGKSDPAKDLNYIH 506
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1
Length = 695
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 108/453 (23%), Positives = 178/453 (39%), Gaps = 68/453 (15%)
Query: 73 YILRSGVSGFHCYS----IYERPPGCRAFDLAQTRLAFKLRRDKFHYMAITDAKQRIMPL 128
+ LR +G H +S E P R+ L + R F+ D + + + +D PL
Sbjct: 125 FFLRGEETGLHAFSRVTYFNETTPSLRS--LGELRTLFRPSTDLWTHFSTSDGNYGPKPL 182
Query: 129 PEDLLPGRGKQLIVPESVLLVNPINPD-LKGEVDD---KYQYSMDNKDGGLHGWISSGP- 183
G L+V ++ + + D + D KY + ++ +HG S G
Sbjct: 183 ------GSNSGLVVQDATTYIGNVTDDPYVSQYSDYFTKYTLAESWRNHDVHGLFSDGSS 236
Query: 184 -----IIGFWIIFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGNEILAHFQEGEAW 238
G W++ + E GGP +L V G + G H L H +
Sbjct: 237 SSDGSTFGAWLVHNTVETYYGGPLHSDLVVD-GIVYNYLVSGHHGAPTPNLTH-----GF 290
Query: 239 RKVFGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSS--PYYLTANERGSAT 296
+ +GP F Y N + +L DA K + A YD ++ P + + R +
Sbjct: 291 DRTWGPQFYYFNRGDSETTLADLRADAAKYADPEWNAEFYDSIADHIPNFTPSTGRTTFK 350
Query: 297 GRFFVQDKFVSSSLIPAKYAYIGLSSARTE---GGWQTESKDYQFWVQTDSKGNFTVKNV 353
G+ + AK I LS + + TES Q+W + D G+F++ V
Sbjct: 351 GKVSLPKG--------AKRPIIVLSEDGQDFQLNVFNTES--LQYWAEIDKSGSFSIPRV 400
Query: 354 VPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWEIGFPDRTA-- 411
V G Y + + G ++ + + SQ++ + T+ G +W IG PD+++
Sbjct: 401 VEGTYRITIYADEIFGWFIQDHVKVLK--SQSKDYSFTWKEESAGKEIWRIGIPDKSSGE 458
Query: 412 -LGCYVPDVN-PMYVNKLFLNSPEKYRQY-GLWDRYTDVHPESDQFFTVGVNDPKKDWFF 468
L Y PD + P+ PE++R Y G +D D PE F VG +DP +D +
Sbjct: 459 YLHGYAPDTSKPL--------QPEQHRIYWGKYDYPADF-PEGINFH-VGKSDPSQDLNY 508
Query: 469 AHVDRRGPDNKYLPT--------TWTIKFHLDS 493
H +L T WT+ F L +
Sbjct: 509 IHWAFFPSQGNHLRTEPYYDNVNNWTVTFDLTA 541
>sp|B8NCU7|RGLA_ASPFN Probable rhamnogalacturonate lyase A OS=Aspergillus flavus (strain
ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC
167) GN=rglA PE=3 SV=1
Length = 528
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 51/252 (20%)
Query: 335 DYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYV 393
D Q+W T S G+FT + PG Y + + G+Y + + V+++AGS T +V
Sbjct: 301 DAQYWTYTSSDGSFTSPAMKPGDYTM----VYYQGEYKVAETSVSVTAGSSTSKDISGFV 356
Query: 394 PLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQ 453
G T+++IG D T G F N+ + R + R + P +
Sbjct: 357 --ETGDTIFKIGDWDGTPTG--------------FRNAENQLRMHPSDSRMSSWGPLT-- 398
Query: 454 FFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA------- 506
+TVG ++ F +G ++ TIKF S G LR+
Sbjct: 399 -YTVGSSELTD---FPMAAFKGVNDPV-----TIKFTATSAQTGAATLRIGTTLSFAGGR 449
Query: 507 -SATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNS 565
AT +D E G NL V R GL +++ +++ S +++G+N+
Sbjct: 450 PQATINDYE--------GSAPSAPTNLN-SRGVTRGAYRGLGEVYDVNIPSGTIVEGENT 500
Query: 566 MFL--VQSRSGD 575
+ + + SGD
Sbjct: 501 ITISVISGSSGD 512
>sp|Q5AX45|RGLA_EMENI Rhamnogalacturonate lyase A OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglA
PE=2 SV=1
Length = 527
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 120/316 (37%), Gaps = 75/316 (23%)
Query: 286 YLTANERGSATGRFFVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTE--SKDYQFWVQTD 343
Y+ AN RG+ TG+ S A + W + D Q+W T
Sbjct: 271 YVAANGRGTVTGK---------------------ASGADSSMDWVVHWYNNDAQYWTYTA 309
Query: 344 SKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVPLRNGPTVWE 403
S G+FT + PG Y + + F + + VT+SAGS T N++ ++ G T+++
Sbjct: 310 SDGSFTSPAMKPGTYTMKYYQGEFP---VAETTVTVSAGSSTTK-NIS-GSVKTGTTIFK 364
Query: 404 IGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQF------FTV 457
IG D G F N+ ++ R +HP + +TV
Sbjct: 365 IGEWDGQPTG--------------FRNADKQLR----------MHPSDSRMDSWSSTYTV 400
Query: 458 GVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLA--IASATRSDLEI 515
G + D+ A K + TIKF S G LR+ ++ A
Sbjct: 401 G-SSSLSDFPMAVF-------KSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQAT 452
Query: 516 FVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSRS 573
+Y +N V R GL +++ + V + ++ G+N++ + + S
Sbjct: 453 INSYTGPAPSAPTNLN---SRGVTRGAYRGLGEVYDVSVPAGTIVTGENTITISVISGSS 509
Query: 574 GDPVCG--VLYDYLRL 587
GD V++D + L
Sbjct: 510 GDAFLSPNVVFDCIEL 525
>sp|Q2U0Q1|RGLA_ASPOR Probable rhamnogalacturonate lyase A OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=rglA PE=3 SV=1
Length = 528
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 51/252 (20%)
Query: 335 DYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYV 393
D Q+W T S G+FT + PG Y + + G+Y + + V+++ GS T
Sbjct: 301 DAQYWTYTSSDGSFTSPAMKPGDYTM----VYYQGEYKVAETSVSVTVGSSTS--KDISG 354
Query: 394 PLRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQ 453
+ G T+++IG D T G F N+ + R + R + P +
Sbjct: 355 SVETGDTIFKIGDWDGTPTG--------------FRNAENQLRMHPSDSRMSSWGPLT-- 398
Query: 454 FFTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA------- 506
+TVG ++ F +G ++ TIKF S G LR+
Sbjct: 399 -YTVGSSELTD---FPMAAFKGVNDPV-----TIKFTATSAQTGAATLRIGTTLSFAGGR 449
Query: 507 -SATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNS 565
AT +D E G NL V R GL +++ +++ S +++G+N+
Sbjct: 450 PQATINDYE--------GSAPSAPTNLN-SRGVTRGAYRGLGEVYDVNIPSGTIVEGENT 500
Query: 566 MFL--VQSRSGD 575
+ + + SGD
Sbjct: 501 ITISVISGSSGD 512
>sp|Q0CVU1|RGLA_ASPTN Probable rhamnogalacturonate lyase A OS=Aspergillus terreus (strain
NIH 2624 / FGSC A1156) GN=rglA PE=3 SV=2
Length = 531
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 97/243 (39%), Gaps = 37/243 (15%)
Query: 337 QFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPL 395
Q+W T S G+FT + PG Y + + G+Y + + VT+SAGS T N++ +
Sbjct: 303 QYWTYTASDGSFTSPAMKPGTYTM----AYYQGEYRVAETSVTVSAGSSTTK-NIS-GSV 356
Query: 396 RNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFF 455
+ G T+++IG D G FLN+ ++ R + R + P +
Sbjct: 357 KTGTTIFKIGDWDGQPTG--------------FLNADKQLRMHPSDSRMSSWGPVTYTVG 402
Query: 456 TVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-SATRSDLE 514
+ V F K + + TIKF S G LR+ S +
Sbjct: 403 SSSVGSFPMALF-----------KSVNSPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQ 451
Query: 515 IFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSR 572
+N G NL V R GL +++ + + + ++ G N++ + +
Sbjct: 452 ATINSY-TGPTPSAPTNLN-SRGVTRGAYRGLGEVYDVSIPAGTIVAGTNTITINVISGS 509
Query: 573 SGD 575
SGD
Sbjct: 510 SGD 512
>sp|A2R2L1|RGLA_ASPNC Probable rhamnogalacturonate lyase A OS=Aspergillus niger (strain
CBS 513.88 / FGSC A1513) GN=rglA PE=3 SV=2
Length = 531
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 335 DYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVP 394
D Q+W T S G+FT + PG Y + + ++ + + VT+SAGS T
Sbjct: 301 DAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYV---VATSEVTVSAGSSTS--KDISGS 355
Query: 395 LRNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQF 454
+ G T+++IG D G F N+ + R + R +D P +
Sbjct: 356 VETGTTIFKIGDWDGQPTG--------------FRNAENQLRMHPSDSRMSDWGPLT--- 398
Query: 455 FTVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-------- 506
+TVG + D+ A K + + TIKF S G LR+
Sbjct: 399 YTVG-SSSLTDFPMAIF-------KSVNSPVTIKFTATSDQTGAATLRIGTTLSFAGGRP 450
Query: 507 SATRSDLEIFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSM 566
AT +D E G NL V R G ++ + V +++G+N++
Sbjct: 451 QATINDYE--------GSAPSAPTNLD-SRGVTRGAYRGYGDVYDVSVPEGTIVEGENTI 501
Query: 567 FL--VQSRSGD 575
+ + SGD
Sbjct: 502 TISVISGSSGD 512
>sp|Q9SE00|PPAF1_IPOBA Purple acid phosphatase 1 OS=Ipomoea batatas GN=PAP1 PE=1 SV=1
Length = 473
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 212 PTCLAMFHGTHYIGNEILAHFQEGEAWRKVFGPIFVYLN--------------STSDASK 257
P + + H Y N AH+ EGEA R +F P FVY S ++
Sbjct: 316 PWLIVLVHAPLY--NSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNV 373
Query: 258 AYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERGSATG 297
AYN+ ++AK + E+A P Y+T + G++ G
Sbjct: 374 AYNI-VNAKCTPVSDESA--------PVYITIGDGGNSEG 404
>sp|Q00019|RGLA_ASPAC Rhamnogalacturonate lyase A OS=Aspergillus aculeatus GN=rglA PE=1
SV=1
Length = 527
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 37/243 (15%)
Query: 337 QFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPL 395
Q+W T S G+FT + PG Y + + G+Y + + VT+SAGS T N++ +
Sbjct: 302 QYWTYTSSSGSFTSPAMKPGTYTM----VYYQGEYAVATSSVTVSAGSTTTK-NIS-GSV 355
Query: 396 RNGPTVWEIGFPDRTALGCYVPDVNPMYVNKLFLNSPEKYRQYGLWDRYTDVHPESDQFF 455
+ G T+++IG D G F N+ + R + R + P + +
Sbjct: 356 KTGTTIFKIGEWDGQPTG--------------FRNAANQLRMHPSDSRMSSWGPLT---Y 398
Query: 456 TVGVNDPKKDWFFAHVDRRGPDNKYLPTTWTIKFHLDSIIKGTYNLRLAIA-SATRSDLE 514
TVG + A D K + TIKF S G LR+ S +
Sbjct: 399 TVGSS--------ALTDFPMAVFKSVNNPVTIKFTATSAQTGAATLRIGTTLSFAGGRPQ 450
Query: 515 IFVNYIDQGHLVYQEMNLGMDNTVCRHGIHGLYQLFSIHVSSLLLIKGDNSMFL--VQSR 572
+N G NL V R GL +++ + + S ++ G N++ + +
Sbjct: 451 ATINSY-TGSAPAAPTNLD-SRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGS 508
Query: 573 SGD 575
SGD
Sbjct: 509 SGD 511
>sp|Q8NJK5|RGLA_ASPNG Rhamnogalacturonate lyase A (Fragment) OS=Aspergillus niger GN=rglA
PE=3 SV=1
Length = 499
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 335 DYQFWVQTDSKGNFTVKNVVPGVYGLHGWVPGFIGDYLDKALVTISAGSQTELGNLTYVP 394
D Q+W T S G+FT + PG Y + + ++ + + VT+SAGS T
Sbjct: 300 DAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYV---VATSEVTVSAGSSTS--KDISGS 354
Query: 395 LRNGPTVWEIG 405
+ G T+++IG
Sbjct: 355 VETGTTIFKIG 365
>sp|Q2FJ97|RPOC_STAA3 DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain USA300) GN=rpoC PE=3 SV=2
Length = 1207
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|P60286|RPOC_STAAW DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MW2) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q6GBU4|RPOC_STAAS DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MSSA476) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|P60285|RPOC_STAAN DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain N315) GN=rpoC PE=1 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|P60284|RPOC_STAAM DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=rpoC PE=1 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q5HID2|RPOC_STAAC DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain COL) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q2YSB8|RPOC_STAAB DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q2G0N5|RPOC_STAA8 DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain NCTC 8325) GN=rpoC PE=3 SV=2
Length = 1207
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q49V53|RPOC_STAS1 DNA-directed RNA polymerase subunit beta' OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|P0C1T4|RPOC_STAAU DNA-directed RNA polymerase subunit beta' (Fragment)
OS=Staphylococcus aureus GN=rpoC PE=3 SV=1
Length = 1057
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q6GJC5|RPOC_STAAR DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MRSA252) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.5 bits (75), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|A1C995|RGLA_ASPCL Probable rhamnogalacturonate lyase A OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=rglA PE=3 SV=1
Length = 528
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 26/169 (15%)
Query: 242 FGPIFVYLNSTSDASKAYNLWIDAKKQRLLQEAAWPYDFVSSPYYLTANERG--SATGRF 299
F ++ Y+NS ++ Y + + + + P + + ++ N +G A+GR
Sbjct: 219 FNALYWYMNSGHVQTEPYRMGLHGPYSMVFSRSGMPGTNIDTSFFANLNIKGYVPASGRG 278
Query: 300 FVQDKFVSSSLIPAKYAYIGLSSARTEGGWQTE--SKDYQFWVQTDSKGNFTVKNVVPGV 357
V K S A + W + Q+W T S G+FT + PG
Sbjct: 279 TVTGK---------------ASGADSRMKWVVHWHNTAAQYWTYTASDGSFTSPAMKPGT 323
Query: 358 YGLHGWVPGFIGDY-LDKALVTISAGSQTELGNLTYVPLRNGPTVWEIG 405
Y + + G+Y + + VT+ AGS+ N++ ++ G T+++IG
Sbjct: 324 YTM----VYYQGEYKVAETSVTVRAGSKITK-NIS-GSVKTGKTIFKIG 366
>sp|Q4L3K4|RPOC_STAHJ DNA-directed RNA polymerase subunit beta' OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=rpoC PE=3 SV=1
Length = 1206
Score = 33.1 bits (74), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQ--YGLWDR-----YTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R YG + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q8CQ83|RPOC_STAES DNA-directed RNA polymerase subunit beta' OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=rpoC PE=3 SV=1
Length = 1207
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQ--YGLWDR-----YTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R YG + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q5HRK9|RPOC_STAEQ DNA-directed RNA polymerase subunit beta' OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=rpoC PE=3
SV=1
Length = 1207
Score = 33.1 bits (74), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQ--YGLWDR-----YTDVHPESDQFFTVGVNDPKKDW 466
DVN + K+ L SPEK R YG + Y + PE D F + P KDW
Sbjct: 3 DVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
>sp|Q8ETY7|RPOC_OCEIH DNA-directed RNA polymerase subunit beta' OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=rpoC PE=3 SV=1
Length = 1203
Score = 32.7 bits (73), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQ--YGLWDR-----YTDVHPESDQFFTVGVNDPKKDW 466
DVN K+ L SPEK R YG + Y + PE D F + P+KDW
Sbjct: 3 DVNNFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDW 58
>sp|B1YGU3|RPOC_EXIS2 DNA-directed RNA polymerase subunit beta' OS=Exiguobacterium
sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
GN=rpoC PE=3 SV=1
Length = 1199
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 418 DVNPMYVNKLFLNSPEKYRQYGLWD-------RYTDVHPESDQFFTVGVNDPKKDW 466
DVN K+ L SPEK R + + Y + PE D F + P KDW
Sbjct: 3 DVNRFEYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDW 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,836,103
Number of Sequences: 539616
Number of extensions: 10889408
Number of successful extensions: 18909
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 18857
Number of HSP's gapped (non-prelim): 42
length of query: 596
length of database: 191,569,459
effective HSP length: 123
effective length of query: 473
effective length of database: 125,196,691
effective search space: 59218034843
effective search space used: 59218034843
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)