BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047027
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRT 360
+NLE + + N ++ +P + L+ L L RN L+ +P F + L L+L
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN 143
Query: 361 NIEVLPSSVSD-LTNLRSLLLGMCGRLKRVPSVA--KLLALQYLDLEATGIEEVPEG-ME 416
++ LP V D LT+L+ L L +LKRVP A KL L+ L L+ ++ VPEG +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 417 MLENL 421
LE L
Sbjct: 203 SLEKL 207
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 45/288 (15%)
Query: 2 WVTVSQPLD---LFKLQT-----EIATALKQSLLENEDKVRRAGRLLGMLKAKEKFVLIL 53
WV+V + L KLQ + + Q L N ++ + R+L ML+ + +LIL
Sbjct: 184 WVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLIL 242
Query: 54 DDTWEAFPLEEVGIPEPNEENGCKLVITTRSHTVCRSMKCKQVVVEL---LSKQEAFNLF 110
DD W+++ L+ ++ C++++TTR +V S+ + VV + L K++ +
Sbjct: 243 DDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEIL 295
Query: 111 IDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEIHEWRNALNELRG-- 168
V +P E + +++EC PL + + A + + + W L +L+
Sbjct: 296 SLFVNMKKADLP----EQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQ 349
Query: 169 --LVRSRNGVNADVLGR-LEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEG 225
+R + + + L + S L+ E ++ + ++ +D +P L W E
Sbjct: 350 FKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME- 407
Query: 226 FIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVK--MHDLIRDM 271
EEV+D IL VN LL +G + +HDL D
Sbjct: 408 -TEEVED----------ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 351 GLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSV----------AKLLALQY 400
GL+ L L+R + LP+S++ L LR L + C L +P L+ LQ
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 401 LDLEATGIEEVPEGMEMLENL 421
L LE TGI +P + L+NL
Sbjct: 188 LRLEWTGIRSLPASIANLQNL 208
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 270 DMALRITSESPLFMVKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILST 329
D A R++ + AGL + P + LE ++L RN + +P++++ L
Sbjct: 98 DQAFRLSHLQHXTIDAAGL--XELPDTXQQFAGLETLTLARNPLRALPASIA-SLNRLRE 154
Query: 330 LLLQRNGLLQRIPECF--------FVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLG 381
L ++ L +PE + L+ L L T I LP+S+++L NL+SL +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 382 MCGRLKRVPSVAKLLALQYLDLEA-TGIEEVP 412
P++ L L+ LDL T + P
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 37/261 (14%)
Query: 21 ALKQSLLENEDKVRRAGRLLGMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVI 80
+ Q L N ++ + R+L ML+ + +LILDD W+++ L+ ++ C++++
Sbjct: 217 SFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILL 268
Query: 81 TTRSHTVCRSMKCKQVVVEL---LSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECG 137
TTR +V S+ + VV + L K++ + V +P E + +++EC
Sbjct: 269 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLP----EQAHSIIKECK 324
Query: 138 RLPLAIVTVAASMSGEEEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRLK 192
PL + + A + + + W L +L+ +R + + + L + S L+
Sbjct: 325 GSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 382
Query: 193 DEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCL 252
E ++ + ++ +D +P L W E EEV+D IL VN L
Sbjct: 383 -EDIKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVED----------ILQEFVNKSL 429
Query: 253 LESAEDGSCVK--MHDLIRDM 271
L +G + +HDL D
Sbjct: 430 LFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 37/261 (14%)
Query: 21 ALKQSLLENEDKVRRAGRLLGMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVI 80
+ Q L N ++ + R+L ML+ + +LILDD W+ + L+ +N C++++
Sbjct: 211 SFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILL 262
Query: 81 TTRSHTVCRSMKCKQVVVEL---LSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECG 137
TTR +V S+ + VV + L +++ + V +PA II +EC
Sbjct: 263 TTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII----KECK 318
Query: 138 RLPLAIVTVAASMSGEEEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRLK 192
PL + + A + + + W L +L+ +R + + + L + S L+
Sbjct: 319 GSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376
Query: 193 DEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCL 252
E ++ + ++ +D +P L W E EEV+D IL VN L
Sbjct: 377 -EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKSL 423
Query: 253 LESAEDGS--CVKMHDLIRDM 271
L +G C +HDL D
Sbjct: 424 LFCNRNGKSFCYYLHDLQVDF 444
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 306 VSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365
+ L N+++ +P+ + L+ L L N L Q +P F + L LNLS ++ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 366 PSSVSD-LTNLRSLLLGMCGRLKRVPS--VAKLLALQYLDLEATGIEEVPEGM 415
P+ V D LT L+ L L +L+ +P KL L+ L L ++ VP+G+
Sbjct: 92 PNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361
NL + L N ++ +P+ + L L+L N L Q +P+ F + L LNL+
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 362 IEVLPSSVSD-LTNLRSLLLGMCGRLKRVPS--VAKLLALQYLDLEATGIEEVPEGM 415
++ LP V D LTNL L L +L+ +P KL L+ L L ++ VP+G+
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 308 LMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367
L +N I+EI N + + L L L N L+ +P F G +L++SRT I LPS
Sbjct: 161 LNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 368 SVSDLTNLRSLLLGMCGRLKRVPSVAKLLAL 398
L NL+ L LK++P++ KL+AL
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPTLEKLVAL 248
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 111/261 (42%), Gaps = 37/261 (14%)
Query: 21 ALKQSLLENEDKVRRAGRLLGMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVI 80
+ Q L N ++ + R+L ML+ + +LILDD W+ + L+ +N C++++
Sbjct: 218 SFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILL 269
Query: 81 TTRSHTVCRSMKCKQVVVEL---LSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECG 137
TT +V S+ + VV + L +++ + V +PA II +EC
Sbjct: 270 TTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII----KECK 325
Query: 138 RLPLAIVTVAASMSGEEEIHEWRNALNELRG----LVRSRNGVNADVLGR-LEFSYHRLK 192
PL + + A + + + W L +L+ +R + + + L + S L+
Sbjct: 326 GSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 383
Query: 193 DEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCL 252
E ++ + ++ +D +P L W E EEV+D IL VN L
Sbjct: 384 -EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKSL 430
Query: 253 LESAEDGS--CVKMHDLIRDM 271
L +G C +HDL D
Sbjct: 431 LFCNRNGKSFCYYLHDLQVDF 451
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 6/126 (4%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361
NL + L N ++ +P+ + L L+L N L Q +P+ F + L L L
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 362 IEVLPSSVSD-LTNLRSLLLGMCGRLKRVPS--VAKLLALQYLDLEATGIEEVPEGM-EM 417
++ LP V D LTNL L L +L+ +P KL L+ L L ++ VP+G+ +
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 418 LENLSH 423
L +L+H
Sbjct: 204 LTSLTH 209
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 308 LMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367
L +N I+EI N + + L L L N L+ +P F G +L++SRT I LPS
Sbjct: 161 LNKNGIQEI-HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 368 SVSDLTNLRSLLLGMCGRLKRVPSVAKLLAL 398
L NL+ L LK++P++ KL+AL
Sbjct: 220 --YGLENLKKLRARSTYNLKKLPTLEKLVAL 248
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362
L ++L N ++ + + + L TL L N L +P F H+ L L L +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 363 EVLPSSVSD-LTNLRSLLLGMCGRLKRVPSVA--KLLALQYLDLEATGIEEVPEG 414
+ LPS V D LT L+ L L +L+ +P+ A KL LQ L L ++ VP G
Sbjct: 120 KSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362
L ++L N ++ + + + L TL L N L +P F H+ L L L +
Sbjct: 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQL 119
Query: 363 EVLPSSVSD-LTNLRSLLLGMCGRLKRVPSVA--KLLALQYLDLEATGIEEVPEG 414
+ LPS V D LT L+ L L +L+ +P+ A KL LQ L L ++ VP G
Sbjct: 120 KSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 338 LQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSD-LTNLRSLLLGMCGRLKRVP-SVAKL 395
L +P F + L VL+L + VLPS+V D L +L+ L + C +L +P + +L
Sbjct: 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELPRGIERL 134
Query: 396 LALQYLDLEATGIEEVPEG-MEMLENLSH 423
L +L L+ ++ +P G + L +L+H
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTH 163
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361
NL + L N + IP+ + L L L RN ++ IP F + L+ L+L
Sbjct: 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWL-RNNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 362 --IEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEG 414
+ + L+NLR L L MC L+ +P++ L+ L LDL + + G
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPG 225
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361
+LE + L RN+I I L+TL L N L IP FV++ LK L L
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNP 147
Query: 362 IEVLPS-SVSDLTNLRSLLLGMCGRLKRVPSVA--KLLALQYLDLEATGIEEVPE 413
IE +PS + + + +LR L LG RL + A L L+YL+L + E+P
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362
+V +R N+ E+P +S + +L+ L N + Q I F H+ L++L LSR +I
Sbjct: 45 FSKVICVRKNLREVPDGISTNTRLLN---LHENQI-QIIKVNSFKHLRHLEILQLSRNHI 100
Query: 363 EVLP-SSVSDLTNLRSLLLGMCGRLKRVPSVA--KLLALQYLDLEATGIEEVPE 413
+ + + L NL +L L RL +P+ A L L+ L L IE +P
Sbjct: 101 RTIEIGAFNGLANLNTLEL-FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS 153
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL NN+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL NN+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL NN+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL NN+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL NN+ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 193
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSR-T 360
+L + L N + +P+ + L L L RN ++ IP F + L+ L+L
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 361 NIEVLP-SSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEG 414
+E + ++ L NLR L LGMC LK +P++ L+ L+ L+L ++ + G
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRPG 196
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 309 MRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS 368
+R NIEE+PS++ E L ++ N L Q +P F M LK LNL+ ++ +P
Sbjct: 154 LRANIEEMPSHLFDDLENLESIEFGSNKLRQ-MPRGIFGKMPKLKQLNLASNQLKSVPDG 212
Query: 369 VSD-LTNLRSLLL 380
+ D LT+L+ + L
Sbjct: 213 IFDRLTSLQKIWL 225
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 27/114 (23%)
Query: 328 STLLLQRNGLLQRIPECFFVHMHGLK-------------------VLNLS----RTNIEV 364
+TL+ + + L I +HGLK + NLS R NIE
Sbjct: 101 TTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEE 160
Query: 365 LPSSV-SDLTNLRSLLLGMCGRLKRVPS--VAKLLALQYLDLEATGIEEVPEGM 415
+PS + DL NL S+ G +L+++P K+ L+ L+L + ++ VP+G+
Sbjct: 161 MPSHLFDDLENLESIEFG-SNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSR-T 360
+L + L N + +P+ + L L L RN ++ IP F + L+ L+L
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 361 NIEVLP-SSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEG 414
+E + ++ L NLR L LGMC LK +P++ L+ L+ L+L ++ + G
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCN-LKDIPNLTALVRLEELELSGNRLDLIRPG 196
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL N++ E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL N + E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL N + E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL N + E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 294 PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFF 346
PG LE++SL N + E+P+ + E L TLLLQ N L IP+ FF
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 31/150 (20%)
Query: 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGL----------------------- 337
N ++LM NNI+ I ++ H L L L RN +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 338 LQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVPSVA--K 394
L IP F ++ L+ L L IE +PS + + + +L L LG +L+ + A
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 395 LLALQYLDLEATGIEEVPE-----GMEMLE 419
L L+YL+L I+++P G+E LE
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELE 224
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 24/120 (20%)
Query: 295 GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKV 354
G E+ L + L N IE IPS R+P + + LK
Sbjct: 141 GAFEYLSKLRELWLRNNPIESIPSYA-----------------FNRVPSLMRLDLGELKK 183
Query: 355 LNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEG 414
L + + L NL+ L LGMC +K +P++ L+ L+ L++ E+ G
Sbjct: 184 LEY------ISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPG 236
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 305 RVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV 364
R+ L N ++ +P + L+ L L +N + Q +P+ F + L +L L ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 365 LPSSVSD-LTNLRSLLLGMCGRLKRVPS--VAKLLALQYLDLEA 405
LP+ V D LT L+ L L +LK VP +L +LQ + L
Sbjct: 91 LPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 133
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 109 LFIDGVGNSILQVPALNKEIINEVVEECGRLPLA 142
L++ G+ +S L+ LN+ ++ E+V+EC +PL+
Sbjct: 223 LWVSGLDSSYLREQXLNEPLVREIVKECSNIPLS 256
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 109 LFIDGVGNSILQVPALNKEIINEVVEECGRLPLA 142
L++ G+ +S L+ LN+ ++ E+V+EC +PL+
Sbjct: 223 LWVSGLDSSYLREQXLNEPLVREIVKECSNIPLS 256
>pdb|4FDW|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Bacova_01565) From Bacteroides Ovatus Atcc 8483 At 2.05
A Resolution
Length = 401
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 338 LQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLA 397
L+++ E F + + LK +LS+T I LP+S + +LL + LK + S A L
Sbjct: 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKT 225
Query: 398 LQYLDLEATGIEEVPEGMEML 418
Q + E+PE + +
Sbjct: 226 SQLKTI------EIPENVSTI 240
>pdb|3H37|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form I
pdb|3H37|B Chain B, The Structure Of Cca-Adding Enzyme Apo Form I
Length = 441
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 290 LLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECF 345
L+F ++ W+E +R SL RN I EI H E + LL+ L +R+P F
Sbjct: 287 FLEFYDDESWKEVRDRYSLRRNLINEI-----RHVEKSAPALLEX--LSERVPASF 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,867,502
Number of Sequences: 62578
Number of extensions: 754730
Number of successful extensions: 1646
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1595
Number of HSP's gapped (non-prelim): 68
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)