Query 047027
Match_columns 692
No_of_seqs 323 out of 3656
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-69 4.8E-74 605.2 30.6 446 1-458 214-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.3E-53 1.8E-57 498.3 39.6 565 41-674 290-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-32 4.3E-37 278.8 8.3 227 1-229 53-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 1.3E-20 2.8E-25 224.3 17.7 346 294-676 86-447 (968)
5 PLN03210 Resistant to P. syrin 99.8 1.5E-19 3.3E-24 215.2 19.7 320 301-674 589-947 (1153)
6 PLN00113 leucine-rich repeat r 99.8 2.8E-19 6E-24 212.9 18.4 136 294-431 205-344 (968)
7 KOG0444 Cytoskeletal regulator 99.8 1.8E-20 3.8E-25 191.5 -1.9 282 292-649 94-380 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1E-20 2.2E-25 193.2 -5.1 325 282-673 36-378 (1255)
9 KOG4194 Membrane glycoprotein 99.7 5.3E-19 1.1E-23 179.8 1.7 129 301-432 102-234 (873)
10 KOG4194 Membrane glycoprotein 99.7 7.2E-18 1.6E-22 171.6 6.4 272 301-608 78-357 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3E-19 6.5E-24 173.9 -4.8 354 291-668 127-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.2E-17 6.9E-22 159.9 -5.8 141 290-436 172-314 (565)
13 KOG0617 Ras suppressor protein 99.5 3.3E-16 7.1E-21 135.4 -2.0 157 299-466 31-189 (264)
14 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.4E-20 132.1 -4.2 147 286-436 41-190 (264)
15 KOG0618 Serine/threonine phosp 99.5 2.3E-15 5E-20 161.7 -3.3 346 285-671 52-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 3.7E-13 8E-18 149.4 13.8 114 305-435 205-318 (788)
17 KOG4658 Apoptotic ATPase [Sign 99.4 2.1E-13 4.6E-18 154.7 9.3 125 301-426 545-672 (889)
18 PRK15370 E3 ubiquitin-protein 99.4 2.2E-12 4.7E-17 144.3 12.4 120 303-436 180-300 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 3.1E-12 6.7E-17 143.1 11.9 137 284-436 184-321 (754)
20 PRK15387 E3 ubiquitin-protein 99.4 1E-11 2.2E-16 138.1 15.7 152 282-464 205-356 (788)
21 KOG0618 Serine/threonine phosp 99.3 5.2E-13 1.1E-17 144.0 0.3 314 306-675 3-327 (1081)
22 KOG4237 Extracellular matrix p 99.2 1.7E-12 3.8E-17 127.1 -1.7 127 306-436 51-181 (498)
23 KOG4237 Extracellular matrix p 99.0 2.9E-11 6.2E-16 118.7 -3.8 287 286-600 54-355 (498)
24 KOG0532 Leucine-rich repeat (L 98.9 1.7E-10 3.7E-15 118.4 -2.8 143 288-436 108-251 (722)
25 KOG1259 Nischarin, modulator o 98.8 7.4E-10 1.6E-14 104.9 0.1 133 300-437 283-417 (490)
26 KOG0532 Leucine-rich repeat (L 98.8 9.2E-10 2E-14 113.2 -1.1 172 288-473 85-257 (722)
27 cd00116 LRR_RI Leucine-rich re 98.7 5.4E-09 1.2E-13 108.2 4.0 109 323-432 21-150 (319)
28 cd00116 LRR_RI Leucine-rich re 98.7 5.6E-09 1.2E-13 108.1 4.1 157 300-461 22-204 (319)
29 PF14580 LRR_9: Leucine-rich r 98.7 2.2E-08 4.8E-13 91.4 4.5 125 326-458 20-148 (175)
30 PF14580 LRR_9: Leucine-rich r 98.6 6E-08 1.3E-12 88.6 5.5 121 301-426 19-147 (175)
31 PRK04841 transcriptional regul 98.3 1.2E-05 2.7E-10 95.7 17.4 244 1-276 60-332 (903)
32 COG4886 Leucine-rich repeat (L 98.3 4.4E-07 9.5E-12 96.9 3.9 161 287-459 125-286 (394)
33 PLN03150 hypothetical protein; 98.2 2.6E-06 5.6E-11 95.5 8.7 85 352-436 420-508 (623)
34 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 65.2 3.8 57 326-383 2-59 (61)
35 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 65.7 3.3 58 303-361 3-60 (61)
36 KOG3207 Beta-tubulin folding c 98.2 3.1E-07 6.8E-12 92.1 0.5 160 298-464 118-285 (505)
37 KOG1259 Nischarin, modulator o 98.2 4.7E-07 1E-11 86.2 1.1 122 326-458 285-407 (490)
38 COG4886 Leucine-rich repeat (L 98.1 2.5E-06 5.4E-11 91.1 4.1 151 301-463 116-268 (394)
39 PRK15386 type III secretion pr 98.1 1.4E-05 2.9E-10 82.3 9.1 79 347-436 49-132 (426)
40 KOG3207 Beta-tubulin folding c 98.1 4.7E-07 1E-11 90.9 -1.7 136 300-436 171-318 (505)
41 KOG2120 SCF ubiquitin ligase, 98.0 1.5E-07 3.3E-12 89.6 -6.0 85 325-409 185-273 (419)
42 PLN03150 hypothetical protein; 98.0 1.9E-05 4E-10 88.7 8.2 104 326-430 419-526 (623)
43 KOG4341 F-box protein containi 97.9 3E-07 6.4E-12 91.8 -5.5 124 528-672 317-441 (483)
44 KOG2120 SCF ubiquitin ligase, 97.9 1.1E-06 2.3E-11 84.0 -1.7 184 374-643 186-375 (419)
45 PRK15386 type III secretion pr 97.8 6.5E-05 1.4E-09 77.4 8.1 114 301-429 52-187 (426)
46 PF12799 LRR_4: Leucine Rich r 97.6 4.9E-05 1.1E-09 51.9 3.3 33 351-383 2-34 (44)
47 PF12799 LRR_4: Leucine Rich r 97.6 4.4E-05 9.6E-10 52.1 2.9 40 396-435 1-40 (44)
48 KOG3665 ZYG-1-like serine/thre 97.6 3.4E-05 7.3E-10 86.3 2.7 129 301-431 122-262 (699)
49 KOG3665 ZYG-1-like serine/thre 97.4 9.1E-05 2E-09 83.0 3.8 139 324-464 121-264 (699)
50 KOG0531 Protein phosphatase 1, 97.4 2.5E-05 5.5E-10 83.6 -1.1 129 301-434 72-201 (414)
51 KOG1859 Leucine-rich repeat pr 97.4 8.3E-06 1.8E-10 87.0 -4.8 130 301-436 164-296 (1096)
52 KOG1859 Leucine-rich repeat pr 97.4 6.4E-06 1.4E-10 87.8 -5.9 125 326-462 165-291 (1096)
53 KOG4341 F-box protein containi 97.4 7.6E-06 1.6E-10 82.0 -5.2 261 326-672 139-416 (483)
54 KOG0531 Protein phosphatase 1, 97.4 4.6E-05 9.9E-10 81.6 0.1 105 300-410 94-200 (414)
55 COG2909 MalT ATP-dependent tra 97.2 0.011 2.4E-07 65.6 16.4 241 1-278 68-340 (894)
56 KOG2982 Uncharacterized conser 97.2 0.00016 3.4E-09 69.5 1.4 21 629-649 247-267 (418)
57 KOG1909 Ran GTPase-activating 97.1 0.00018 3.9E-09 70.8 1.4 42 417-461 155-196 (382)
58 KOG4579 Leucine-rich repeat (L 96.9 0.00011 2.4E-09 62.4 -1.6 86 302-390 54-139 (177)
59 KOG4579 Leucine-rich repeat (L 96.9 0.00011 2.5E-09 62.3 -1.6 84 351-435 54-139 (177)
60 KOG2982 Uncharacterized conser 96.7 0.0012 2.6E-08 63.6 3.4 83 323-407 69-157 (418)
61 KOG1644 U2-associated snRNP A' 96.6 0.006 1.3E-07 55.7 7.0 99 326-428 43-149 (233)
62 KOG1644 U2-associated snRNP A' 96.6 0.0036 7.7E-08 57.2 5.5 103 300-406 41-150 (233)
63 TIGR03015 pepcterm_ATPase puta 96.6 0.05 1.1E-06 54.5 14.2 143 7-150 80-242 (269)
64 PF05729 NACHT: NACHT domain 95.9 0.017 3.7E-07 52.9 6.2 72 43-114 77-163 (166)
65 KOG1909 Ran GTPase-activating 95.9 0.0015 3.2E-08 64.5 -1.1 133 300-432 156-311 (382)
66 KOG2123 Uncharacterized conser 95.4 0.00084 1.8E-08 64.0 -4.5 81 302-387 20-102 (388)
67 KOG2739 Leucine-rich acidic nu 95.4 0.014 2.9E-07 55.8 3.3 35 348-382 63-100 (260)
68 PRK00411 cdc6 cell division co 95.3 0.71 1.5E-05 49.1 16.7 236 2-256 90-358 (394)
69 PRK06893 DNA replication initi 95.2 0.015 3.2E-07 56.6 3.0 96 48-146 92-203 (229)
70 KOG2739 Leucine-rich acidic nu 95.1 0.011 2.4E-07 56.4 1.9 79 302-383 44-126 (260)
71 PF00560 LRR_1: Leucine Rich R 95.0 0.0082 1.8E-07 34.0 0.4 21 351-371 1-21 (22)
72 PF01637 Arch_ATPase: Archaeal 94.9 0.08 1.7E-06 51.6 7.6 110 33-145 103-233 (234)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.01 2.2E-07 33.6 0.6 21 397-417 1-21 (22)
74 TIGR02928 orc1/cdc6 family rep 94.4 4.1 8.8E-05 42.8 19.5 237 2-256 79-350 (365)
75 KOG2123 Uncharacterized conser 94.4 0.0025 5.4E-08 60.9 -4.3 98 323-425 17-123 (388)
76 KOG1947 Leucine rich repeat pr 94.2 0.012 2.5E-07 64.7 -0.3 107 323-429 186-305 (482)
77 PF13306 LRR_5: Leucine rich r 94.1 0.13 2.9E-06 44.7 6.2 102 318-426 5-110 (129)
78 COG5238 RNA1 Ran GTPase-activa 93.8 0.053 1.2E-06 52.0 3.2 44 392-435 88-136 (388)
79 KOG3864 Uncharacterized conser 93.7 0.0081 1.7E-07 55.0 -2.3 74 555-645 116-190 (221)
80 PF13306 LRR_5: Leucine rich r 93.6 0.19 4E-06 43.7 6.3 115 299-421 10-128 (129)
81 PRK00080 ruvB Holliday junctio 93.3 0.47 1E-05 49.0 9.7 158 75-259 151-313 (328)
82 PF13504 LRR_7: Leucine rich r 92.9 0.078 1.7E-06 27.8 1.6 17 657-674 1-17 (17)
83 COG5238 RNA1 Ran GTPase-activa 92.7 0.2 4.4E-06 48.2 5.1 19 418-436 156-174 (388)
84 PF13504 LRR_7: Leucine rich r 92.4 0.08 1.7E-06 27.7 1.3 16 397-412 2-17 (17)
85 TIGR00635 ruvB Holliday juncti 92.1 5.2 0.00011 40.8 15.4 158 75-259 130-292 (305)
86 KOG3864 Uncharacterized conser 91.0 0.061 1.3E-06 49.4 -0.2 90 566-672 102-191 (221)
87 COG3903 Predicted ATPase [Gene 90.4 0.26 5.5E-06 50.7 3.5 225 39-277 81-315 (414)
88 KOG1947 Leucine rich repeat pr 89.6 0.077 1.7E-06 58.2 -0.9 139 508-667 188-331 (482)
89 smart00369 LRR_TYP Leucine-ric 88.2 0.36 7.7E-06 28.4 1.7 20 396-415 2-21 (26)
90 smart00370 LRR Leucine-rich re 88.2 0.36 7.7E-06 28.4 1.7 20 396-415 2-21 (26)
91 PRK09087 hypothetical protein; 88.1 1.2 2.6E-05 43.0 6.3 94 49-145 89-194 (226)
92 PF13401 AAA_22: AAA domain; P 84.3 1.6 3.4E-05 37.9 4.6 82 1-84 41-125 (131)
93 smart00370 LRR Leucine-rich re 84.1 0.82 1.8E-05 26.8 1.8 20 350-369 2-21 (26)
94 smart00369 LRR_TYP Leucine-ric 84.1 0.82 1.8E-05 26.8 1.8 20 350-369 2-21 (26)
95 KOG0473 Leucine-rich repeat pr 83.8 0.046 1E-06 51.2 -5.5 80 301-383 42-121 (326)
96 PF13173 AAA_14: AAA domain 82.5 1 2.2E-05 39.2 2.5 61 46-106 60-127 (128)
97 TIGR03420 DnaA_homol_Hda DnaA 82.5 1.3 2.8E-05 42.8 3.6 97 48-147 91-202 (226)
98 KOG0473 Leucine-rich repeat pr 80.7 0.077 1.7E-06 49.7 -5.3 84 323-409 40-124 (326)
99 COG3899 Predicted ATPase [Gene 78.7 19 0.00041 42.4 11.8 159 95-276 212-386 (849)
100 PRK13342 recombination factor 77.6 8.1 0.00018 41.3 8.0 100 45-147 90-197 (413)
101 PRK05564 DNA polymerase III su 76.6 5.9 0.00013 40.6 6.4 91 47-144 93-188 (313)
102 PRK07471 DNA polymerase III su 76.6 4.7 0.0001 42.1 5.7 95 46-147 140-239 (365)
103 TIGR00678 holB DNA polymerase 76.1 5.4 0.00012 37.2 5.5 87 46-141 95-186 (188)
104 PRK08727 hypothetical protein; 74.9 4.7 0.0001 39.3 4.8 93 48-143 94-201 (233)
105 PRK06645 DNA polymerase III su 74.8 7.9 0.00017 42.3 6.9 96 46-144 127-227 (507)
106 PRK09112 DNA polymerase III su 74.7 10 0.00022 39.4 7.4 97 46-147 140-241 (351)
107 PRK05642 DNA replication initi 73.6 3.7 8E-05 40.0 3.7 93 50-145 100-207 (234)
108 smart00367 LRR_CC Leucine-rich 73.6 2 4.3E-05 25.3 1.1 17 656-672 1-17 (26)
109 KOG2543 Origin recognition com 73.4 31 0.00067 35.6 10.0 112 1-115 59-194 (438)
110 PF00308 Bac_DnaA: Bacterial d 72.7 2.9 6.3E-05 40.2 2.8 94 48-144 98-206 (219)
111 PRK08084 DNA replication initi 72.1 4.4 9.5E-05 39.5 3.9 94 49-145 99-208 (235)
112 TIGR02903 spore_lon_C ATP-depe 69.9 20 0.00044 40.5 9.0 109 37-149 283-398 (615)
113 PRK14087 dnaA chromosomal repl 68.6 16 0.00034 39.6 7.5 99 48-147 207-320 (450)
114 PRK07003 DNA polymerase III su 68.4 13 0.00028 42.2 6.9 93 46-141 118-215 (830)
115 KOG0989 Replication factor C, 67.8 4.4 9.5E-05 40.2 2.7 87 50-139 132-223 (346)
116 PRK14961 DNA polymerase III su 67.4 13 0.00028 39.0 6.5 96 46-144 118-218 (363)
117 PTZ00112 origin recognition co 65.7 51 0.0011 38.4 10.7 140 9-150 828-986 (1164)
118 PRK14963 DNA polymerase III su 65.3 14 0.0003 40.6 6.3 95 46-143 115-214 (504)
119 PRK12402 replication factor C 65.1 11 0.00023 39.0 5.3 96 47-145 125-225 (337)
120 KOG2227 Pre-initiation complex 64.2 91 0.002 33.3 11.4 140 11-150 219-376 (529)
121 TIGR02397 dnaX_nterm DNA polym 62.8 14 0.0003 38.6 5.7 99 46-147 116-219 (355)
122 PRK06620 hypothetical protein; 62.5 11 0.00024 36.1 4.4 92 48-143 86-186 (214)
123 smart00364 LRR_BAC Leucine-ric 62.5 5.3 0.00011 23.5 1.3 17 351-367 3-19 (26)
124 PRK12323 DNA polymerase III su 61.6 22 0.00047 39.9 6.9 99 45-146 122-225 (700)
125 TIGR01242 26Sp45 26S proteasom 60.0 16 0.00035 38.3 5.6 91 46-140 214-328 (364)
126 PF14516 AAA_35: AAA-like doma 58.0 1.3E+02 0.0028 31.0 11.7 49 98-153 198-246 (331)
127 PRK14949 DNA polymerase III su 57.8 29 0.00063 40.4 7.3 99 45-146 117-220 (944)
128 PRK07940 DNA polymerase III su 57.1 24 0.00051 37.3 6.1 92 46-145 116-212 (394)
129 COG1474 CDC6 Cdc6-related prot 56.4 2.4E+02 0.0053 29.5 13.3 142 3-146 78-238 (366)
130 PRK14956 DNA polymerase III su 56.2 37 0.00081 36.7 7.4 98 45-145 119-221 (484)
131 cd01128 rho_factor Transcripti 54.8 15 0.00032 36.1 3.9 59 1-59 49-115 (249)
132 COG1373 Predicted ATPase (AAA+ 54.6 25 0.00054 37.3 5.8 63 47-110 94-163 (398)
133 PRK08903 DnaA regulatory inact 54.0 20 0.00043 34.6 4.7 100 48-150 91-203 (227)
134 PRK14955 DNA polymerase III su 53.7 34 0.00074 36.3 6.8 97 46-145 126-227 (397)
135 smart00365 LRR_SD22 Leucine-ri 52.3 11 0.00024 22.2 1.6 14 396-409 2-15 (26)
136 PRK05707 DNA polymerase III su 52.0 44 0.00095 34.4 7.0 93 47-146 106-203 (328)
137 PRK14959 DNA polymerase III su 52.0 39 0.00084 37.9 6.9 101 46-149 118-224 (624)
138 COG2256 MGS1 ATPase related to 51.1 3.2E+02 0.0069 28.8 12.9 154 36-192 93-264 (436)
139 PRK14960 DNA polymerase III su 50.5 43 0.00093 37.7 6.9 97 46-145 117-218 (702)
140 PLN03025 replication factor C 49.2 21 0.00046 36.6 4.3 95 46-143 98-197 (319)
141 PRK08691 DNA polymerase III su 48.6 48 0.001 37.6 7.0 98 46-146 118-220 (709)
142 PRK14957 DNA polymerase III su 48.5 56 0.0012 36.2 7.5 93 46-141 118-215 (546)
143 PRK07994 DNA polymerase III su 47.4 45 0.00098 37.6 6.6 100 45-147 117-221 (647)
144 PRK00440 rfc replication facto 47.2 27 0.00058 35.7 4.7 94 47-143 102-200 (319)
145 PRK04195 replication factor C 45.7 1.4E+02 0.0031 32.7 10.2 94 47-145 98-201 (482)
146 PRK14086 dnaA chromosomal repl 45.1 58 0.0013 36.4 6.9 92 49-143 379-485 (617)
147 PRK14962 DNA polymerase III su 45.0 72 0.0016 34.7 7.6 100 46-148 116-221 (472)
148 PRK08451 DNA polymerase III su 44.5 50 0.0011 36.4 6.3 98 46-146 116-218 (535)
149 PF13516 LRR_6: Leucine Rich r 43.7 11 0.00024 21.4 0.7 13 350-362 2-14 (24)
150 PRK07764 DNA polymerase III su 43.7 60 0.0013 38.0 7.1 96 46-144 119-219 (824)
151 PRK14970 DNA polymerase III su 40.1 57 0.0012 34.2 5.9 95 46-143 107-206 (367)
152 PRK14951 DNA polymerase III su 40.0 63 0.0014 36.4 6.3 98 46-146 123-225 (618)
153 PF05621 TniB: Bacterial TniB 38.8 1.3E+02 0.0029 30.2 7.7 140 3-143 101-258 (302)
154 PRK06305 DNA polymerase III su 38.8 90 0.0019 33.8 7.2 95 46-143 120-219 (451)
155 PRK14954 DNA polymerase III su 38.8 1.1E+02 0.0024 34.6 8.0 93 46-141 126-223 (620)
156 PRK13341 recombination factor 38.2 55 0.0012 37.7 5.6 95 46-143 108-214 (725)
157 PRK14971 DNA polymerase III su 37.4 62 0.0014 36.5 5.9 95 46-143 120-219 (614)
158 PRK14950 DNA polymerase III su 36.3 61 0.0013 36.5 5.6 98 46-146 119-221 (585)
159 PRK14969 DNA polymerase III su 35.9 69 0.0015 35.5 5.8 96 46-144 118-218 (527)
160 PRK14964 DNA polymerase III su 35.5 61 0.0013 35.3 5.2 96 46-144 115-215 (491)
161 smart00368 LRR_RI Leucine rich 35.2 31 0.00067 20.6 1.7 14 350-363 2-15 (28)
162 TIGR00362 DnaA chromosomal rep 34.6 43 0.00092 35.7 3.9 92 49-143 201-307 (405)
163 PRK07133 DNA polymerase III su 31.9 1.5E+02 0.0032 34.1 7.6 97 46-145 117-218 (725)
164 PRK09111 DNA polymerase III su 31.4 1.3E+02 0.0028 33.9 7.0 98 46-146 131-233 (598)
165 PF05725 FNIP: FNIP Repeat; I 30.5 64 0.0014 21.7 2.9 14 560-573 29-42 (44)
166 PRK08769 DNA polymerase III su 30.1 83 0.0018 32.2 4.9 92 46-146 112-208 (319)
167 PRK07399 DNA polymerase III su 28.7 94 0.002 31.7 5.1 94 46-145 123-220 (314)
168 PRK04132 replication factor C 28.6 2.2E+02 0.0048 33.5 8.4 95 47-144 630-729 (846)
169 TIGR00767 rho transcription te 28.5 78 0.0017 33.4 4.4 58 1-58 201-266 (415)
170 PRK14953 DNA polymerase III su 28.1 1.2E+02 0.0025 33.3 5.9 99 46-147 118-221 (486)
171 PF06144 DNA_pol3_delta: DNA p 27.6 97 0.0021 28.1 4.6 95 46-143 56-163 (172)
172 PRK14958 DNA polymerase III su 26.8 97 0.0021 34.1 5.0 97 46-145 118-219 (509)
173 PRK00149 dnaA chromosomal repl 26.2 63 0.0014 35.0 3.5 93 48-143 212-319 (450)
174 PRK06871 DNA polymerase III su 25.7 2.4E+02 0.0051 29.0 7.3 90 46-143 106-200 (325)
175 PRK05896 DNA polymerase III su 25.6 1.1E+02 0.0023 34.3 5.1 94 47-143 119-217 (605)
176 cd00561 CobA_CobO_BtuR ATP:cor 25.3 65 0.0014 29.1 2.8 46 41-86 89-139 (159)
177 PRK09376 rho transcription ter 25.0 92 0.002 32.8 4.1 58 1-58 202-267 (416)
178 PRK14088 dnaA chromosomal repl 24.8 83 0.0018 33.9 4.0 93 48-143 195-302 (440)
179 TIGR02880 cbbX_cfxQ probable R 24.5 1.3E+02 0.0028 30.3 5.1 69 48-116 122-210 (284)
180 PRK06964 DNA polymerase III su 24.4 2.6E+02 0.0056 29.0 7.3 90 46-146 131-225 (342)
181 PF02463 SMC_N: RecF/RecN/SMC 24.2 24 0.00052 33.8 -0.2 45 47-91 158-205 (220)
182 PRK07993 DNA polymerase III su 24.2 2.6E+02 0.0057 28.8 7.4 102 35-144 92-202 (334)
183 PRK06647 DNA polymerase III su 23.8 1.8E+02 0.0038 32.6 6.4 97 46-145 118-219 (563)
184 PRK14948 DNA polymerase III su 22.7 1.6E+02 0.0035 33.4 5.9 98 46-146 120-222 (620)
185 cd00009 AAA The AAA+ (ATPases 22.7 99 0.0021 26.5 3.6 41 46-86 83-131 (151)
186 PRK14952 DNA polymerase III su 22.0 2.9E+02 0.0062 31.1 7.6 94 46-142 117-215 (584)
187 COG3267 ExeA Type II secretory 20.6 5.9E+02 0.013 25.1 8.3 139 9-147 90-246 (269)
188 PRK12422 chromosomal replicati 20.1 4.4E+02 0.0095 28.5 8.3 89 48-139 203-306 (445)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-69 Score=605.15 Aligned_cols=446 Identities=38% Similarity=0.611 Sum_probs=373.9
Q ss_pred CEEEecCCCCHHHHHHHHHHHhhhhhhccch--HHHHHHHHHHHHHhCCeEEEEecCccCcCCcccccCCCCCCCCCeEE
Q 047027 1 IWVTVSQPLDLFKLQTEIATALKQSLLENED--KVRRAGRLLGMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCKL 78 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~--~~~~~~~~~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I 78 (692)
|||+||+.|+..+++++|+..++........ .......+. .++++|||+||+||||++.+|+.+..++|....||+|
T Consensus 214 iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~-~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~Kv 292 (889)
T KOG4658|consen 214 IWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLL-NLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKV 292 (889)
T ss_pred EEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHH-HHhccCceEEEEecccccccHHhcCCCCCCccCCeEE
Confidence 7999999999999999999998764333222 234444444 4448899999999999999999999999988899999
Q ss_pred EEEecchhhhcc-cccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcCH
Q 047027 79 VITTRSHTVCRS-MKCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEI 156 (692)
Q Consensus 79 ivTTR~~~v~~~-~~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~ 156 (692)
++|||++.|+.. +++...+ ++.|+.+|||.||++.||.......+.++++|++|+++|+|+|||++++|+.|+.+.+.
T Consensus 293 vlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~ 372 (889)
T KOG4658|consen 293 VLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTV 372 (889)
T ss_pred EEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcH
Confidence 999999999998 7776777 99999999999999999988544445699999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccC-CCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHcCCcccchhhhh
Q 047027 157 HEWRNALNELRGLVRSR-NGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQA 235 (692)
Q Consensus 157 ~~w~~~~~~l~~~~~~~-~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~ 235 (692)
++|+++.+.+....... ..+.+.+..++.+|||.|+ +++|.||+|||+||+|+.|++..++.+|+||||+.+...+..
T Consensus 373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~ 451 (889)
T KOG4658|consen 373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGET 451 (889)
T ss_pred HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccc
Confidence 99999999887663332 3457789999999999999 999999999999999999999999999999999998777888
Q ss_pred HHHhHHHHHHHHHhhccccccCC---CCEEEehHHHHHHHHHHhc-----CCCeEEEecCcceeecCCcccccccccEEE
Q 047027 236 KYDRGHTILNRLVNCCLLESAED---GSCVKMHDLIRDMALRITS-----ESPLFMVKAGLRLLKFPGEQEWEENLERVS 307 (692)
Q Consensus 236 ~~~~~~~~l~~L~~~~ll~~~~~---~~~~~mhdl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 307 (692)
++++|.+++++|++++|+....+ ...|+|||++|++|.+++. +++ .++..+......|.... ...+|+++
T Consensus 452 ~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~-~~~~rr~s 529 (889)
T KOG4658|consen 452 AEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKS-WNSVRRMS 529 (889)
T ss_pred hhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccc-hhheeEEE
Confidence 99999999999999999998753 3789999999999999998 666 55555544445554433 36789999
Q ss_pred eecCCccccCCCCCCCCCCccEEEccCCCc-cCCCchhHhhcCCCCcEEEccCCC-CccCCccccCCCCCcEEEccCCCC
Q 047027 308 LMRNNIEEIPSNMSPHCEILSTLLLQRNGL-LQRIPECFFVHMHGLKVLNLSRTN-IEVLPSSVSDLTNLRSLLLGMCGR 385 (692)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~l~~c~~ 385 (692)
+.++.+..++... .+++|++|.+.+|.. +..++..+|..|+.||+|||++|. +..+|.+|+.|.|||||++++ +.
T Consensus 530 ~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~ 606 (889)
T KOG4658|consen 530 LMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TG 606 (889)
T ss_pred EeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CC
Confidence 9999998876653 677899999999974 788888888999999999999876 789999999999999999998 67
Q ss_pred CcCCC-cccccccCCEEecccC-CCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 386 LKRVP-SVAKLLALQYLDLEAT-GIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 386 ~~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
+..+| ++++|+.|++|++..+ .+..+|..+..|.+|++|.+....... - .....++.+|+ .|+.+...
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~---~~~l~el~~Le-~L~~ls~~ 676 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-D---KLLLKELENLE-HLENLSIT 676 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-c---hhhHHhhhccc-chhhheee
Confidence 89999 8999999999999998 555665555669999999996654111 0 12234455555 55555553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.3e-53 Score=498.29 Aligned_cols=565 Identities=20% Similarity=0.256 Sum_probs=407.7
Q ss_pred HHHHhCCeEEEEecCccCcCCcccccCCCCCCCCCeEEEEEecchhhhcccccccee-eccCChHhHHHHHHhhhcCCCC
Q 047027 41 GMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVITTRSHTVCRSMKCKQVV-VELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 41 ~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
+..+++||+||||||||+.++|+.+.....++++||+||||||+++++..++...+| ++.++++|||+||+++||+...
T Consensus 290 ~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~ 369 (1153)
T PLN03210 290 EERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS 369 (1153)
T ss_pred HHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 334478999999999999999999988778889999999999999999877777888 9999999999999999998744
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQC 199 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~ 199 (692)
+ ++.+.+++++|+++|+|+|||++++|++|+++ +..+|+.++++++.. ...++.+++++||+.|+++..|.|
T Consensus 370 ~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~------~~~~I~~~L~~SYd~L~~~~~k~~ 441 (1153)
T PLN03210 370 P-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG------LDGKIEKTLRVSYDGLNNKKDKAI 441 (1153)
T ss_pred C-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC------ccHHHHHHHHHhhhccCccchhhh
Confidence 3 45788999999999999999999999999985 789999999998752 246799999999999984569999
Q ss_pred HhHhcCCCCCCccCHHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHHHhhccccccCCCCEEEehHHHHHHHHHHhcCC
Q 047027 200 FLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVKMHDLIRDMALRITSES 279 (692)
Q Consensus 200 fl~la~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mhdl~~~~~~~~~~~~ 279 (692)
|+++|+||.++.++ .+..|++.+.... +..++.|++++|++... ..+.|||++++|++.+++++
T Consensus 442 Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 442 FRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhh
Confidence 99999999997553 3666777664432 22388999999998753 46999999999999998654
Q ss_pred C------eEEEec------------Cccee-------------ecCCcccccccccEEEeecCCcc-------ccCCCCC
Q 047027 280 P------LFMVKA------------GLRLL-------------KFPGEQEWEENLERVSLMRNNIE-------EIPSNMS 321 (692)
Q Consensus 280 ~------~~~~~~------------~~~~~-------------~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~ 321 (692)
. .+.+.. ...+. .-+.....+.+++.|.+..+... .+|..+.
T Consensus 506 ~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~ 585 (1153)
T PLN03210 506 SNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD 585 (1153)
T ss_pred cCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchh
Confidence 2 111110 00000 00111345677777777654321 3455544
Q ss_pred CCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEE
Q 047027 322 PHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYL 401 (692)
Q Consensus 322 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L 401 (692)
.-..+|+.|.+.++. +..+|..+ .+.+|+.|+++++.+..+|.++..+.+|++|++++|+.++.+|.++.+++|++|
T Consensus 586 ~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L 662 (1153)
T PLN03210 586 YLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETL 662 (1153)
T ss_pred hcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEE
Confidence 223469999998875 78888765 578999999999999999999999999999999999889999999999999999
Q ss_pred ecccC-CCcccCccccCCCCCCEEEccC-CCCCCCChhHHhhHHHhhhhhccccceeEEecC-ccchhhhhhcccCCCcc
Q 047027 402 DLEAT-GIEEVPEGMEMLENLSHLYLYL-PLLKKFPAALRETVEEAASLSDRLDSFEGHFFK-LKDFNIYVKSADGRGSK 478 (692)
Q Consensus 402 ~l~~~-~l~~lp~~i~~l~~L~~L~l~~-~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~-~~~~~~~~~~~~~~~l~ 478 (692)
++.+| .+..+|..++++++|+.|++++ +.++.+|. .+ +++ +|+.|.+..+. +..++. ...+++
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-------~i-~l~-sL~~L~Lsgc~~L~~~p~-----~~~nL~ 728 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-------GI-NLK-SLYRLNLSGCSRLKSFPD-----ISTNIS 728 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC-------cC-CCC-CCCEEeCCCCCCcccccc-----ccCCcC
Confidence 99998 7889999999999999999975 46778885 22 567 78887775432 111111 112344
Q ss_pred eEEEeecccccccccccccccccchhhhhcccceEEeecccccCC---C-----Cccccccccccceeccccchhhhhhc
Q 047027 479 DYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICER---E-----EPIVLPEDVQFLQMNRVHDVASLNDV 550 (692)
Q Consensus 479 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~---~-----~~~~~~~~L~~L~l~~~~~~~~~~~~ 550 (692)
.+.+.-+.... .+. .. .+..+..+.+.++..... . .....+++|+.|.+.+|..+
T Consensus 729 ~L~L~~n~i~~--lP~-----~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l------ 791 (1153)
T PLN03210 729 WLDLDETAIEE--FPS-----NL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL------ 791 (1153)
T ss_pred eeecCCCcccc--ccc-----cc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc------
Confidence 44443222111 110 00 122333344433221110 0 01234567888888887643
Q ss_pred CCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchh-----hhhhcccce
Q 047027 551 LPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEET-----EKELATNTI 624 (692)
Q Consensus 551 ~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~-----~~~~~~~~~ 624 (692)
..+|. ++.++ +|+.|+|++|..++.+|... ++++|+.|++++|+.+..++....... +..+ ...+
T Consensus 792 ----~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-~~iP 862 (1153)
T PLN03210 792 ----VELPSSIQNLH-KLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-EEVP 862 (1153)
T ss_pred ----cccChhhhCCC-CCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccccccccCEeECCCCCC-ccCh
Confidence 33444 66777 88888888888888775432 577888888888888776653211100 0000 0112
Q ss_pred eeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccC
Q 047027 625 VNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLS 674 (692)
Q Consensus 625 ~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP 674 (692)
.....+++|+.|.+.+|++|+.++. ....+++|+.|.+.+|++|..++
T Consensus 863 ~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 863 WWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred HHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 2345688899999999999998877 66778889999999999888654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=2e-32 Score=278.81 Aligned_cols=227 Identities=34% Similarity=0.650 Sum_probs=176.2
Q ss_pred CEEEecCCCCHHHHHHHHHHHhhhhhh---ccchHHHHHHHHHHHHHhCCeEEEEecCccCcCCcccccCCCCCCCCCeE
Q 047027 1 IWVTVSQPLDLFKLQTEIATALKQSLL---ENEDKVRRAGRLLGMLKAKEKFVLILDDTWEAFPLEEVGIPEPNEENGCK 77 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ 77 (692)
+||.+++..+..++++.|+++++.... ...+.......+.+.+ +++++||||||||+..+|+.+...++.+..|++
T Consensus 53 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~k 131 (287)
T PF00931_consen 53 IWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSK 131 (287)
T ss_dssp EEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-E
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccc
Confidence 599999999999999999999987633 2233444555555554 778999999999999999998888877778999
Q ss_pred EEEEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcC
Q 047027 78 LVITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEE 155 (692)
Q Consensus 78 IivTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~ 155 (692)
||||||+..++..++. ...+ +++|+.+||++||++.++......++..++.+++|+++|+|+|+|++++|++|+.+.+
T Consensus 132 ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~ 211 (287)
T PF00931_consen 132 ILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST 211 (287)
T ss_dssp EEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987764 4455 9999999999999999987642223456788999999999999999999999977667
Q ss_pred HHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHcCCccc
Q 047027 156 IHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEE 229 (692)
Q Consensus 156 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~~~~~~ 229 (692)
..+|+.+++.+.............++.++.+||+.|+ +++|+||+|||+||+++.|++..++++|+++|++..
T Consensus 212 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 212 VDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP-DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH-TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccccccccccccccccccccccceechhcCC-ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 7899999988876664433356789999999999999 799999999999999999999999999999999876
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.3e-20 Score=224.34 Aligned_cols=346 Identities=16% Similarity=0.179 Sum_probs=215.0
Q ss_pred CCcccccccccEEEeecCCcc-ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCccccC
Q 047027 294 PGEQEWEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSSVSD 371 (692)
Q Consensus 294 ~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~ 371 (692)
+.....+++++.|++++|.+. .+|..++..+++|++|++++|.....+|. +.+++|++|++++|.+. .+|..++.
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhc
Confidence 334455678888888888876 67777666788888888888875555664 45778888888888876 56777888
Q ss_pred CCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCc-ccCccccCCCCCCEEEccCCCCC-CCChhHHhhHHHhhhh
Q 047027 372 LTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE-EVPEGMEMLENLSHLYLYLPLLK-KFPAALRETVEEAASL 448 (692)
Q Consensus 372 l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~l~~~~~~l~~L 448 (692)
+.+|++|++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|+++.|.+. .+|. .++++
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l 235 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-------EIGGL 235 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-------hHhcC
Confidence 8888888888876666777 6888888888888888765 67788888888888888877765 4554 56777
Q ss_pred hccccceeEEecCccch-hhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCC-Cc
Q 047027 449 SDRLDSFEGHFFKLKDF-NIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICERE-EP 526 (692)
Q Consensus 449 ~~~L~~L~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~-~~ 526 (692)
+ +|+.|++..+.+... +.. .....+|+.+.+..+...+. ....+..+..++.+++.++.+.+.. ..
T Consensus 236 ~-~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~---------~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 236 T-SLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGP---------IPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred C-CCCEEECcCceeccccChh--HhCCCCCCEEECcCCeeecc---------CchhHhhccCcCEEECcCCeeccCCChh
Confidence 7 888887766554421 111 12234455555543322110 1123445666777778777765432 23
Q ss_pred cccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccch
Q 047027 527 IVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIE 605 (692)
Q Consensus 527 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~ 605 (692)
+..+++|+.|++.++.... ..|. +..++ +|+.|++++|.....+|. .+..+++|+.|++++|.-..
T Consensus 304 ~~~l~~L~~L~l~~n~~~~----------~~~~~~~~l~-~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTG----------KIPVALTSLP-RLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred HcCCCCCcEEECCCCccCC----------cCChhHhcCC-CCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCeeEe
Confidence 5566778888877765321 1222 55666 788888877654434432 35566777777777753222
Q ss_pred hhhccCcc--------hhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccCCc
Q 047027 606 EIVAVDDE--------ETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSLS 676 (692)
Q Consensus 606 ~l~~~~~~--------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~~ 676 (692)
.++..-.. .....+....+.....+++|+.|.+.++.--..++. ....+++|+.|++++|.-...+|..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCccChh
Confidence 22110000 000000001112233567777777777754434443 5666778888888877644455543
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=1.5e-19 Score=215.22 Aligned_cols=320 Identities=19% Similarity=0.288 Sum_probs=189.6
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC-CccCCccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN-IEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~ 379 (692)
.+++.|.+.++.+..+|..+ ...+|+.|++.+|. +..++..+ ..+++|++|+++++. +..+| .++.+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC--CccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 45788888888888887765 45778888888875 66677665 678888888888765 55666 467788888888
Q ss_pred ccCCCCCcCCC-cccccccCCEEecccC-CCcccCccccCCCCCCEEEccCC-CCCCCChhHHhhHHHhhhhhcccccee
Q 047027 380 LGMCGRLKRVP-SVAKLLALQYLDLEAT-GIEEVPEGMEMLENLSHLYLYLP-LLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 380 l~~c~~~~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~-~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
+++|..+..+| .++++++|++|++++| .++.+|..+ ++++|+.|+++++ .+..+|. ... +|+.|.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----------~~~-nL~~L~ 731 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----------IST-NISWLD 731 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----------ccC-CcCeee
Confidence 88888888888 7888888888888887 677788765 6778888887655 2334442 012 455555
Q ss_pred EEecCccchhhhhhcccCCCcceEEEeecccccccccccc------------------------cccccchhhhhcccce
Q 047027 457 GHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHL------------------------IPKNYTHLEKLYKHKS 512 (692)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~------------------------~~~~~~~l~~l~~l~~ 512 (692)
+..+.+..++... ...+|..+.+.... ........ ...-...+..+..|+.
T Consensus 732 L~~n~i~~lP~~~---~l~~L~~L~l~~~~--~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 732 LDETAIEEFPSNL---RLENLDELILCEMK--SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred cCCCccccccccc---cccccccccccccc--hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 5444433332211 11122222211000 00000000 0000011233444445
Q ss_pred EEeecccccCCCCccccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcC
Q 047027 513 VCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQN 592 (692)
Q Consensus 513 l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~ 592 (692)
|.+.+|......+....+++|+.|.+++|..+ ..+|. .+++|+.|+|+++ .++.+|. .+..+++
T Consensus 807 L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L----------~~~p~---~~~nL~~L~Ls~n-~i~~iP~--si~~l~~ 870 (1153)
T PLN03210 807 LEIENCINLETLPTGINLESLESLDLSGCSRL----------RTFPD---ISTNISDLNLSRT-GIEEVPW--WIEKFSN 870 (1153)
T ss_pred EECCCCCCcCeeCCCCCccccCEEECCCCCcc----------ccccc---cccccCEeECCCC-CCccChH--HHhcCCC
Confidence 55544432222111123445555555554422 22221 1126666666653 4444432 3567889
Q ss_pred cceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCc-----------eeecCCcce
Q 047027 593 LEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNG-----------VLVCNSLQE 661 (692)
Q Consensus 593 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~-----------~~~~~~L~~ 661 (692)
|+.|++++|++++.++. ....+++|+.+.+++|++|..++.... ...+|+...
T Consensus 871 L~~L~L~~C~~L~~l~~----------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~ 934 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSL----------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVC 934 (1153)
T ss_pred CCEEECCCCCCcCccCc----------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhc
Confidence 99999999999998762 334688999999999999987754211 123556677
Q ss_pred EEEcCCCCccccC
Q 047027 662 IKVYGCPKLKRLS 674 (692)
Q Consensus 662 L~i~~C~~L~~lP 674 (692)
+.+.+|.+|..-+
T Consensus 935 l~f~nC~~L~~~a 947 (1153)
T PLN03210 935 INFINCFNLDQEA 947 (1153)
T ss_pred cccccccCCCchh
Confidence 7888998887543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=2.8e-19 Score=212.93 Aligned_cols=136 Identities=27% Similarity=0.336 Sum_probs=70.7
Q ss_pred CCcccccccccEEEeecCCcc-ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCccccC
Q 047027 294 PGEQEWEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSSVSD 371 (692)
Q Consensus 294 ~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~ 371 (692)
|.....+.+++.|++.+|.+. .+|..+ ..+++|++|++++|.....+|..+ +.+++|++|++++|.+. .+|.++.+
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeeccCchhHhh
Confidence 333344455555555555554 233333 255555555555554333444433 55555555555555544 34555555
Q ss_pred CCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCc-ccCccccCCCCCCEEEccCCCC
Q 047027 372 LTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE-EVPEGMEMLENLSHLYLYLPLL 431 (692)
Q Consensus 372 l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~ 431 (692)
+.+|++|++++|.....+| .+.++++|++|++.+|.+. .+|..++.+++|+.|++.+|.+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 5555555555554444455 4555555555555555443 4445555555555555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.8e-20 Score=191.50 Aligned_cols=282 Identities=21% Similarity=0.283 Sum_probs=199.3
Q ss_pred ecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccC
Q 047027 292 KFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSD 371 (692)
Q Consensus 292 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 371 (692)
.+|..+..+..++.|++++|.+.++|..+. ..+++-+|+|++|+ +..+|.++|.++..|-+|||++|.++.+|+.+..
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE-~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR 171 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLE-YAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR 171 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhh-hhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence 567788889999999999999999998875 88999999999997 9999999999999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCcCCC--cccccccCCEEecccCC--CcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhh
Q 047027 372 LTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATG--IEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAAS 447 (692)
Q Consensus 372 l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~--l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~ 447 (692)
|.+|++|+|++|+ +.... .+..+++|++|+++++. +..+|.++-.|.+|+.+++++|.+..+|. .+-+
T Consensus 172 L~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-------cly~ 243 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE-------CLYK 243 (1255)
T ss_pred HhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH-------HHhh
Confidence 9999999999964 33333 56678899999999983 45899999999999999999999999886 6778
Q ss_pred hhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCcc
Q 047027 448 LSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPI 527 (692)
Q Consensus 448 L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~ 527 (692)
+. +|+.|+++.+.++.+...... ...++.|+|+...+...+..+
T Consensus 244 l~-~LrrLNLS~N~iteL~~~~~~-----------------------------------W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 244 LR-NLRRLNLSGNKITELNMTEGE-----------------------------------WENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred hh-hhheeccCcCceeeeeccHHH-----------------------------------HhhhhhhccccchhccchHHH
Confidence 88 888888876666554322211 112334444444433333334
Q ss_pred ccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchh
Q 047027 528 VLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEE 606 (692)
Q Consensus 528 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~ 606 (692)
..++.|+.|...++.- .++++|+ ++.+. +|+.+...+ +++.-+ |. .+-.++.|+.|.++. +.+-.
T Consensus 288 cKL~kL~kLy~n~NkL---------~FeGiPSGIGKL~-~Levf~aan-N~LElV-PE-glcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKL---------TFEGIPSGIGKLI-QLEVFHAAN-NKLELV-PE-GLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred hhhHHHHHHHhccCcc---------cccCCccchhhhh-hhHHHHhhc-cccccC-ch-hhhhhHHHHHhcccc-cceee
Confidence 4556666665554432 3456665 66666 666666655 333333 22 233444555555544 44444
Q ss_pred hhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceecc
Q 047027 607 IVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCS 649 (692)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~ 649 (692)
+| ..+.-+|-|+.|++.+.|+|.--|.
T Consensus 354 LP----------------eaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 354 LP----------------EAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ch----------------hhhhhcCCcceeeccCCcCccCCCC
Confidence 43 1222356666666666666655444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1e-20 Score=193.24 Aligned_cols=325 Identities=20% Similarity=0.246 Sum_probs=203.0
Q ss_pred EEEecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCc-cCCCchhHhhcCCCCcEEEccCC
Q 047027 282 FMVKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGL-LQRIPECFFVHMHGLKVLNLSRT 360 (692)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 360 (692)
+.......+..+|.+...+.++.+|++.+|.+..+-..+. .++.||.+.+..|+. ...+|+.+| ++..|.+|||++|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 4455566677888888888899999999999887766665 888999999988863 345788874 7899999999999
Q ss_pred CCccCCccccCCCCCcEEEccCCCCCcCCC-c-ccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhH
Q 047027 361 NIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAAL 438 (692)
Q Consensus 361 ~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l 438 (692)
.+.+.|..+..-.++-.|+|++ +.+..+| + +-+|+.|-.||+++|+++.+|+.+.+|..|++|.+++|++..+
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf---- 188 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF---- 188 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH----
Confidence 9999999888889999999998 5788888 4 7789999999999999999999999999999999988876421
Q ss_pred HhhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecc
Q 047027 439 RETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFAC 518 (692)
Q Consensus 439 ~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~ 518 (692)
....+..++ .|++|.++...-+-.. -.+.++.+.++..++|+..
T Consensus 189 --QLrQLPsmt-sL~vLhms~TqRTl~N---------------------------------~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 189 --QLRQLPSMT-SLSVLHMSNTQRTLDN---------------------------------IPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred --HHhcCccch-hhhhhhcccccchhhc---------------------------------CCCchhhhhhhhhcccccc
Confidence 122333444 5555555432211100 0112334444445555544
Q ss_pred cccCCCCccccccccccceeccccchh------------hhhhcCCcccCCcc-cccccCceeEEEEeccCCccc--cch
Q 047027 519 KICEREEPIVLPEDVQFLQMNRVHDVA------------SLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKN--LFS 583 (692)
Q Consensus 519 ~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~--l~~ 583 (692)
.+...++.+-.+++|+.|.++++.... ++.-+-..+..+|. +..++ .|+.|.+.+. +++. +|.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~-kL~kLy~n~N-kL~FeGiPS 310 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLT-KLTKLYANNN-KLTFEGIPS 310 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhH-HHHHHHhccC-cccccCCcc
Confidence 444444444445566666666544210 00000001223333 33444 4555544432 2211 211
Q ss_pred hchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEE
Q 047027 584 LRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIK 663 (692)
Q Consensus 584 ~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~ 663 (692)
.+.+|..|+.+...+ +.++-+| ..+..++.|+.|.+. |..|-.+|. ++..+|.|+.|+
T Consensus 311 --GIGKL~~Levf~aan-N~LElVP----------------EglcRC~kL~kL~L~-~NrLiTLPe--aIHlL~~l~vLD 368 (1255)
T KOG0444|consen 311 --GIGKLIQLEVFHAAN-NKLELVP----------------EGLCRCVKLQKLKLD-HNRLITLPE--AIHLLPDLKVLD 368 (1255)
T ss_pred --chhhhhhhHHHHhhc-cccccCc----------------hhhhhhHHHHHhccc-ccceeechh--hhhhcCCcceee
Confidence 234444555555444 3443333 233456677777765 345656655 666677777777
Q ss_pred EcCCCCcccc
Q 047027 664 VYGCPKLKRL 673 (692)
Q Consensus 664 i~~C~~L~~l 673 (692)
+.+.|+|.--
T Consensus 369 lreNpnLVMP 378 (1255)
T KOG0444|consen 369 LRENPNLVMP 378 (1255)
T ss_pred ccCCcCccCC
Confidence 7777777643
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=5.3e-19 Score=179.77 Aligned_cols=129 Identities=26% Similarity=0.345 Sum_probs=55.2
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 379 (692)
++++.+++..|.++.+|.... ...+++.|+|.+|. +..+..+-+.-++.||.|||+.|.|.++|. ++..=.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~-~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGH-ESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred Ccceeeeeccchhhhcccccc-cccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 344444444444444443322 33344444444442 333333333444444444444444444432 222233444444
Q ss_pred ccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCC
Q 047027 380 LGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 380 l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 432 (692)
|++ +.++.+. .|..+.+|.+|.++.|+++.+|.. +.+|++|+.|+|..|.+.
T Consensus 180 La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 180 LAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred ecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 444 2333333 244444444444444444444432 233444444444444443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=7.2e-18 Score=171.60 Aligned_cols=272 Identities=19% Similarity=0.215 Sum_probs=182.4
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 379 (692)
...+.|++++|.+..+....+.++++|+.+++..|. +..+|... ...-+|..|+|.+|.|.++ .+++..++-||.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 456789999999988776667789999999999986 88888743 5556799999999998877 45688889999999
Q ss_pred ccCCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcccccee
Q 047027 380 LGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 380 l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
|+. +.+.++| ++..-.++++|++.+|+|+.+-. .+..+.+|..|.|+.|.++.+|. ..+++|. +|+.|+
T Consensus 156 LSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~------r~Fk~L~-~L~~Ld 227 (873)
T KOG4194|consen 156 LSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ------RSFKRLP-KLESLD 227 (873)
T ss_pred hhh-chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH------HHhhhcc-hhhhhh
Confidence 998 5778887 68888899999999999998764 46778899999999999999985 3566777 888888
Q ss_pred EEecCccchhhhhhcccCCCcceEEEeecc---cccccccccccccccchhhhhcccceEEeecccccCCCC-ccccccc
Q 047027 457 GHFFKLKDFNIYVKSADGRGSKDYCLWLSA---SGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREE-PIVLPED 532 (692)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~---~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~-~~~~~~~ 532 (692)
+..+.++-. +.+.+.+...++.+.+.-+. +.+..|. .+.+.+.++|+...+..... .+-.++.
T Consensus 228 LnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy------------~l~kme~l~L~~N~l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 228 LNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFY------------GLEKMEHLNLETNRLQAVNEGWLFGLTS 294 (873)
T ss_pred ccccceeee-hhhhhcCchhhhhhhhhhcCcccccCccee------------eecccceeecccchhhhhhcccccccch
Confidence 765544332 12223333334444333222 2222221 34445566666555433221 2444566
Q ss_pred cccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhh
Q 047027 533 VQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIV 608 (692)
Q Consensus 533 L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~ 608 (692)
|+.|+++.+..- .+ ....| +|.++|++|+|++ +.++.+ +.+.+..|..|++|.++. +++..+-
T Consensus 295 L~~L~lS~NaI~-ri-----h~d~W----sftqkL~~LdLs~-N~i~~l-~~~sf~~L~~Le~LnLs~-Nsi~~l~ 357 (873)
T KOG4194|consen 295 LEQLDLSYNAIQ-RI-----HIDSW----SFTQKLKELDLSS-NRITRL-DEGSFRVLSQLEELNLSH-NSIDHLA 357 (873)
T ss_pred hhhhccchhhhh-ee-----ecchh----hhcccceeEeccc-cccccC-ChhHHHHHHHhhhhcccc-cchHHHH
Confidence 666666553311 00 01222 2334788888876 566666 334566777777777777 5666553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=3e-19 Score=173.89 Aligned_cols=354 Identities=18% Similarity=0.209 Sum_probs=173.3
Q ss_pred eecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcccc
Q 047027 291 LKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVS 370 (692)
Q Consensus 291 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~ 370 (692)
...+.++..+..+..++..+|.+..+|..++ .+.++..+++.+|. ++.+|+..+. |+.|+.||...|.++.+|+.++
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHH-HHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCChhhc
Confidence 3444444445555555556666666666554 55556666666664 5555555433 6666666666666666666666
Q ss_pred CCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCcccc-CCCCCCEEEccCCCCCCCChhHHhhHHHhhhhh
Q 047027 371 DLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGME-MLENLSHLYLYLPLLKKFPAALRETVEEAASLS 449 (692)
Q Consensus 371 ~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~ 449 (692)
.+..|.-|+++. +++..+|+|+.+..|.+|++..|.++.+|++++ ++++|..|++..|+++++|. ++..|+
T Consensus 204 ~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-------e~clLr 275 (565)
T KOG0472|consen 204 GLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-------EICLLR 275 (565)
T ss_pred chhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-------HHHHhh
Confidence 666666666665 345555555544444444444444444444443 44444444444444444443 344444
Q ss_pred ccccceeEEecCccchhhhhhcccCCCcceEEEeeccc--------------------------------cccccccccc
Q 047027 450 DRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSAS--------------------------------GKRRFLTHLI 497 (692)
Q Consensus 450 ~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~--------------------------------~~~~~~~~~~ 497 (692)
+|+.|+++.+.++.++..+... +++.+.+..+++ ++........
T Consensus 276 -sL~rLDlSNN~is~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 276 -SLERLDLSNNDISSLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred -hhhhhcccCCccccCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 4444444443333333222211 111111111110 0000000011
Q ss_pred ccccchhhhhcccceEEeecccccCCCCc---cccccccccceeccccc-------------hhhhhhcCCcccCCcc--
Q 047027 498 PKNYTHLEKLYKHKSVCLFACKICEREEP---IVLPEDVQFLQMNRVHD-------------VASLNDVLPREQGLVN-- 559 (692)
Q Consensus 498 ~~~~~~l~~l~~l~~l~L~~~~~~~~~~~---~~~~~~L~~L~l~~~~~-------------~~~~~~~~~~l~~l~~-- 559 (692)
+.+....-+....+.++++...+...+.. .+.-.-.....++.+.- .+.+.-.. +.-+|+.
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn-n~isfv~~~ 430 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN-NKISFVPLE 430 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc-CccccchHH
Confidence 11111122222334444433333222211 00000011111111110 00000000 1123333
Q ss_pred cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchh--------hhhhcccceeeeeccC
Q 047027 560 IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEET--------EKELATNTIVNTVTLP 631 (692)
Q Consensus 560 l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~--------~~~~~~~~~~~~~~~~ 631 (692)
+..++ +|..|++++ +.+.++|. . +..+..|+.|+++. +.+..+|..--..+ .-++...++.....+.
T Consensus 431 l~~l~-kLt~L~L~N-N~Ln~LP~-e-~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 431 LSQLQ-KLTFLDLSN-NLLNDLPE-E-MGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred HHhhh-cceeeeccc-chhhhcch-h-hhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 67888 999999998 56677743 2 56788899999998 57766653210000 0112222333456778
Q ss_pred CcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 632 RLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 632 ~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
+|..|++.+. .+..+|. +.+.+.+|++|.+.|.|
T Consensus 506 nL~tLDL~nN-dlq~IPp--~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 506 NLTTLDLQNN-DLQQIPP--ILGNMTNLRHLELDGNP 539 (565)
T ss_pred hcceeccCCC-chhhCCh--hhccccceeEEEecCCc
Confidence 8888888764 5788877 88889999999998876
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=3.2e-17 Score=159.90 Aligned_cols=141 Identities=30% Similarity=0.399 Sum_probs=86.4
Q ss_pred eeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccc
Q 047027 290 LLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSV 369 (692)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i 369 (692)
++..|...-.++.+++++...|.+..+|+.+. .+.+|.-|++..|. +..+|+ |+++..|..++++.|.|+.+|.++
T Consensus 172 l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg-~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 172 LKALPENHIAMKRLKHLDCNSNLLETLPPELG-GLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred hhhCCHHHHHHHHHHhcccchhhhhcCChhhc-chhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHHhhHHHH
Confidence 33444433335556666666666666666654 56666666666664 555653 366666666666666666666655
Q ss_pred c-CCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 370 S-DLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 370 ~-~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+ ++.++.+||++. +++++.| .+..+++|.+||+++|.++.+|.++|++ .|+.|.+.+|++..+.+
T Consensus 248 ~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred hcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHH
Confidence 5 566666666666 4566666 5666666666666666666666666666 66666666666554443
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=3.3e-16 Score=135.37 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=138.9
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.++++++|.+++|++..+|+.+. .+.+|++|++.+|+ +..+|.++ +.+++||.|+++.|.+..+|.+++.++-|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 45778899999999999998886 89999999999886 89999987 89999999999999999999999999999999
Q ss_pred EccCCCCC-cCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcccccee
Q 047027 379 LLGMCGRL-KRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 379 ~l~~c~~~-~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
|+++++.- ..+| .|..++.|+.|+++.|.++-+|.+++++++|+.|.+..|.+-++|+ +++.|+ +|++|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk-------eig~lt-~lrelh 179 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK-------EIGDLT-RLRELH 179 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH-------HHHHHH-HHHHHh
Confidence 99986533 4678 7888999999999999999999999999999999999999998997 889999 999998
Q ss_pred EEecCccchh
Q 047027 457 GHFFKLKDFN 466 (692)
Q Consensus 457 ~~~~~~~~~~ 466 (692)
+..+.+.-.+
T Consensus 180 iqgnrl~vlp 189 (264)
T KOG0617|consen 180 IQGNRLTVLP 189 (264)
T ss_pred cccceeeecC
Confidence 8776665444
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.1e-15 Score=132.12 Aligned_cols=147 Identities=31% Similarity=0.422 Sum_probs=134.4
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc--
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-- 363 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-- 363 (692)
+..++..+|..++.+.+++.|++++|.++.+|..++ .+++|+.|++.-|. +..+|..| +.++.|.+||+.+|++.
T Consensus 41 SHNKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnr-l~~lprgf-gs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 41 SHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNR-LNILPRGF-GSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred ccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhh-hhcCcccc-CCCchhhhhhccccccccc
Confidence 345566778888999999999999999999999987 99999999999886 77888886 99999999999999976
Q ss_pred cCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 364 VLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 364 ~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
.+|..+..+..|+.|.++. +..+.+| +++++++||.|.++.|.+-++|.+++.++.|+.|++.+|.+..+|+
T Consensus 118 ~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred cCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 7898898999999999998 5678888 8999999999999999999999999999999999999999999998
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=2.3e-15 Score=161.74 Aligned_cols=346 Identities=19% Similarity=0.214 Sum_probs=178.4
Q ss_pred ecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc
Q 047027 285 KAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV 364 (692)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 364 (692)
........+|..+....+++.+.++.|.+..+|..+. .+.+|..|+|.+|. +..+|.++ ..+++|++|++++|.+..
T Consensus 52 lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~-~~~~l~~lnL~~n~-l~~lP~~~-~~lknl~~LdlS~N~f~~ 128 (1081)
T KOG0618|consen 52 LSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCS-NMRNLQYLNLKNNR-LQSLPASI-SELKNLQYLDLSFNHFGP 128 (1081)
T ss_pred ccccccccCCchhhhHHHHhhcccchhhHhhCchhhh-hhhcchhheeccch-hhcCchhH-HhhhcccccccchhccCC
Confidence 3445555677777777888888888888888887765 78888888888775 77888876 788889999988887766
Q ss_pred CCccccCCCCCcE-----------------------------------------EEccCCCCCcCCCcccccccC-----
Q 047027 365 LPSSVSDLTNLRS-----------------------------------------LLLGMCGRLKRVPSVAKLLAL----- 398 (692)
Q Consensus 365 lp~~i~~l~~L~~-----------------------------------------L~l~~c~~~~~lp~~~~l~~L----- 398 (692)
.|.-+..+..+.. |+|+.|... .+ .+.++.+|
T Consensus 129 ~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~-dls~~~~l~~l~c 206 (1081)
T KOG0618|consen 129 IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VL-DLSNLANLEVLHC 206 (1081)
T ss_pred CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hh-hhhhccchhhhhh
Confidence 6643332222222 333332221 00 01111111
Q ss_pred ---------------CEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCcc
Q 047027 399 ---------------QYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 399 ---------------~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
+.|+...|.+..+- -...-.+|++++++.+.+..+|. -++.+. +|+.++...+.+.
T Consensus 207 ~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~~lp~-------wi~~~~-nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 207 ERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLSNLPE-------WIGACA-NLEALNANHNRLV 277 (1081)
T ss_pred hhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhhcchH-------HHHhcc-cceEecccchhHH
Confidence 11111111111000 00111244455555555555553 234444 4444444443332
Q ss_pred chhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCc-----------------
Q 047027 464 DFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEP----------------- 526 (692)
Q Consensus 464 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~----------------- 526 (692)
........ ...+..+....+.+. .....++.+..++.|+|....+...++.
T Consensus 278 ~lp~ri~~--~~~L~~l~~~~nel~----------yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 278 ALPLRISR--ITSLVSLSAAYNELE----------YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred hhHHHHhh--hhhHHHHHhhhhhhh----------hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 22211100 000111111000000 0001122233344445544444332221
Q ss_pred ---------cccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceee
Q 047027 527 ---------IVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLK 597 (692)
Q Consensus 527 ---------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~ 597 (692)
-...+.|+.|.+.++.-. -..||.+.+++ +|+.|+|++ +.++.+ |-..+.+|..|+.|+
T Consensus 346 ~l~~lp~~~e~~~~~Lq~LylanN~Lt---------d~c~p~l~~~~-hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 346 KLSTLPSYEENNHAALQELYLANNHLT---------DSCFPVLVNFK-HLKVLHLSY-NRLNSF-PASKLRKLEELEELN 413 (1081)
T ss_pred cccccccccchhhHHHHHHHHhcCccc---------ccchhhhcccc-ceeeeeecc-cccccC-CHHHHhchHHhHHHh
Confidence 111233444444333211 14577788898 999999998 567766 556788999999999
Q ss_pred ccccccchhhhccCcchhhh---hhcc---cceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCcc
Q 047027 598 VEGCDSIEEIVAVDDEETEK---ELAT---NTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLK 671 (692)
Q Consensus 598 l~~c~~l~~l~~~~~~~~~~---~~~~---~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 671 (692)
+++ ++++.++..-.....- ..++ ...++...+|.|+.++++ |.+|..+..+. ...-|+|+.|++.|..++.
T Consensus 414 LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 414 LSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence 999 7888887321110000 0000 011244456777888887 55777775522 2223789999998887654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=3.7e-13 Score=149.45 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=49.7
Q ss_pred EEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCC
Q 047027 305 RVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCG 384 (692)
Q Consensus 305 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~ 384 (692)
.|+++.+.+..+|..+. ++|+.|.+.+|. +..+|. .+++|++|++++|.++.+|.. ..+|+.|++.+|
T Consensus 205 ~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N- 272 (788)
T PRK15387 205 VLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN- 272 (788)
T ss_pred EEEcCCCCCCcCCcchh---cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC-
Confidence 44444444444444332 234445555443 344442 134455555555555444432 234444555443
Q ss_pred CCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 385 RLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 385 ~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
.+..+|.+ +.+|+.|++.+|+++.+|.. +++|+.|++++|.+..+|
T Consensus 273 ~L~~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 273 PLTHLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLP 318 (788)
T ss_pred chhhhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCccccCC
Confidence 23333321 13344455555555444432 234555555555444443
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.44 E-value=2.1e-13 Score=154.70 Aligned_cols=125 Identities=31% Similarity=0.430 Sum_probs=102.9
Q ss_pred ccccEEEeecCC--ccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 301 ENLERVSLMRNN--IEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 301 ~~l~~l~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
+++++|-+..|. +..++..+|..++.|++|++++|..+..+|.++ +.+-+||||+++++.+..+|.++++|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 468999999886 677877778889999999999999899999987 99999999999999999999999999999999
Q ss_pred EccCCCCCcCCCc-ccccccCCEEecccCCCcccCccccCCCCCCEEEc
Q 047027 379 LLGMCGRLKRVPS-VAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYL 426 (692)
Q Consensus 379 ~l~~c~~~~~lp~-~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 426 (692)
++..+..+..+|. ...|++|++|.+.......-...++.+.+|++|..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 9999888888884 56699999999988753222223344444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=2.2e-12 Score=144.33 Aligned_cols=120 Identities=27% Similarity=0.464 Sum_probs=72.7
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccC
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGM 382 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 382 (692)
...|.+.++.+..+|..+. ++++.|++++|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---EQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---cCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 4556666666666665432 356666776664 556665442 456777777766666665443 3566777766
Q ss_pred CCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 383 CGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 383 c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
| .+..+| .+. .+|++|++++|++..+|..+. .+|+.|++++|.+..+|.
T Consensus 251 N-~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~ 300 (754)
T PRK15370 251 N-RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPA 300 (754)
T ss_pred C-ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcc
Confidence 4 345566 443 366777777666666666553 367777777776666653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=3.1e-12 Score=143.08 Aligned_cols=137 Identities=24% Similarity=0.383 Sum_probs=111.0
Q ss_pred EecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 284 VKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
......+..+|..+ .++++.|++++|.+..+|..++ ++|+.|++++|. +..+|..+ ..+|+.|++++|.+.
T Consensus 184 ~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 184 RLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRIT 254 (754)
T ss_pred EeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCccC
Confidence 33445566677543 4679999999999999988754 589999999996 77888765 357999999999999
Q ss_pred cCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 364 VLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 364 ~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
.+|..+. .+|++|++++ +.+..+| .+. .+|++|++++|+++.+|..+. .+|+.|++++|.+..+|.
T Consensus 255 ~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 255 ELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred cCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCc
Confidence 9998765 5899999996 5677888 564 589999999999999987654 478999999998888774
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=1e-11 Score=138.06 Aligned_cols=152 Identities=21% Similarity=0.252 Sum_probs=112.7
Q ss_pred EEEecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 282 FMVKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
.+..+...+..+|... ..+++.|.+..|.+..+|.. .++|++|++++|. +..+|.. .++|+.|++++|.
T Consensus 205 ~LdLs~~~LtsLP~~l--~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~-LtsLP~l----p~sL~~L~Ls~N~ 273 (788)
T PRK15387 205 VLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQ-LTSLPVL----PPGLLELSIFSNP 273 (788)
T ss_pred EEEcCCCCCCcCCcch--hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCCc-cCcccCc----ccccceeeccCCc
Confidence 3444555667778644 35789999999999988753 5789999999996 7777752 4688999999999
Q ss_pred CccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 362 IEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 362 ~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
++.+|... .+|+.|++++| .+..+|.. +++|++|++++|.+..+|... .+|+.|++.+|.++.+|..
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~--p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---- 340 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---- 340 (788)
T ss_pred hhhhhhch---hhcCEEECcCC-cccccccc--ccccceeECCCCccccCCCCc---ccccccccccCcccccccc----
Confidence 88887633 56888999985 67777742 468999999999998887633 3577788888888877741
Q ss_pred HHHhhhhhccccceeEEecCccc
Q 047027 442 VEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
.. +|+.|+++.+.+..
T Consensus 341 ------p~-~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 341 ------PS-GLQELSVSDNQLAS 356 (788)
T ss_pred ------cc-ccceEecCCCccCC
Confidence 13 67777776555544
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=5.2e-13 Score=143.97 Aligned_cols=314 Identities=21% Similarity=0.238 Sum_probs=184.1
Q ss_pred EEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCC
Q 047027 306 VSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGR 385 (692)
Q Consensus 306 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~ 385 (692)
++++...++.||..++.. ..+..|++..|. +...|-.+..+.-+|+.|++++|.+..+|..|..+.+|+.|+++. +.
T Consensus 3 vd~s~~~l~~ip~~i~~~-~~~~~ln~~~N~-~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNN-EALQILNLRRNS-LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NY 79 (1081)
T ss_pred cccccccCcccchhhccH-HHHHhhhccccc-cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hh
Confidence 455666677777777633 348888888886 445556666777779999999999999999999999999999997 67
Q ss_pred CcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHH-----HhhhhhccccceeEEe
Q 047027 386 LKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVE-----EAASLSDRLDSFEGHF 459 (692)
Q Consensus 386 ~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~-----~l~~L~~~L~~L~~~~ 459 (692)
++..| +++++.+|++|.|.+|.+..+|.++..+.+|+.|+++.|.+..+|..+..... .-++ . +++.++...
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N-~-~~~~lg~~~ 157 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN-E-KIQRLGQTS 157 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcc-h-hhhhhcccc
Confidence 88899 89999999999999999999999999999999999999999988864311111 1111 1 111121111
Q ss_pred cCccchhhhhh----cccCCCcc-eEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccc
Q 047027 460 FKLKDFNIYVK----SADGRGSK-DYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQ 534 (692)
Q Consensus 460 ~~~~~~~~~~~----~~~~~~l~-~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~ 534 (692)
...-.+..... ......+. .+.++-+.+. ...+..+..++.+......+. ...-.-++|+
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~------------~~dls~~~~l~~l~c~rn~ls---~l~~~g~~l~ 222 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME------------VLDLSNLANLEVLHCERNQLS---ELEISGPSLT 222 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhheeeecccchhh------------hhhhhhccchhhhhhhhcccc---eEEecCcchh
Confidence 00000000000 00000000 0111111100 000111111111111111100 0011124455
Q ss_pred cceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcch
Q 047027 535 FLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEE 614 (692)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~ 614 (692)
.|....+...+.. ..-.|.+|++++++. +.+.++| .+...+++|+.+++.. +.+..++.
T Consensus 223 ~L~a~~n~l~~~~------------~~p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~-N~l~~lp~----- 281 (1081)
T KOG0618|consen 223 ALYADHNPLTTLD------------VHPVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANH-NRLVALPL----- 281 (1081)
T ss_pred eeeeccCcceeec------------cccccccceeeecch-hhhhcch--HHHHhcccceEecccc-hhHHhhHH-----
Confidence 5555444422110 112345889999987 5677774 6778888899988888 67766652
Q ss_pred hhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccCC
Q 047027 615 TEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSL 675 (692)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~ 675 (692)
......+|+.|.+..+ .++.++. ....+.+|+.|++.. .+|.++|.
T Consensus 282 -----------ri~~~~~L~~l~~~~n-el~yip~--~le~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 282 -----------RISRITSLVSLSAAYN-ELEYIPP--FLEGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred -----------HHhhhhhHHHHHhhhh-hhhhCCC--cccccceeeeeeehh-ccccccch
Confidence 2224566777776665 4666665 445567777777764 35666665
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-12 Score=127.10 Aligned_cols=127 Identities=28% Similarity=0.417 Sum_probs=94.8
Q ss_pred EEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccCCC
Q 047027 306 VSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGMCG 384 (692)
Q Consensus 306 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~c~ 384 (692)
.+-.+..+.++|..+. +....+.|..|. +..+|+..|+.+++||.|||+.|.|+.+ |..+.++..|-.|-+.+++
T Consensus 51 VdCr~~GL~eVP~~LP---~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP---PETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC---CcceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4444555666776554 345667788876 7888888888888888888888888866 7778888888777777777
Q ss_pred CCcCCC--cccccccCCEEecccCCCcccC-ccccCCCCCCEEEccCCCCCCCCh
Q 047027 385 RLKRVP--SVAKLLALQYLDLEATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 385 ~~~~lp--~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+++.+| .|++|..|+-|.+.-|++..++ ..+..|++|..|.++.|.+..++.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 888888 4888888888888877777665 346778888888888877776664
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.96 E-value=2.9e-11 Score=118.70 Aligned_cols=287 Identities=19% Similarity=0.204 Sum_probs=178.9
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccC-CCCcc
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSR-TNIEV 364 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~ 364 (692)
.+..+..+|... ......+.+..|.|..+|+..|+.+++||.|+|++|. +..|.+..|.+++.|-.|-+.+ |.|+.
T Consensus 54 r~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 455567777643 4677889999999999999999999999999999997 7777777779999887766655 88999
Q ss_pred CCcc-ccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCC---CCChh
Q 047027 365 LPSS-VSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLK---KFPAA 437 (692)
Q Consensus 365 lp~~-i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~---~lp~~ 437 (692)
+|.. +++|..|+-|.+.-| .+.-++ .+..+++|..|.+..|.+..++. .+..+.+++++++..|..- .+|-.
T Consensus 131 l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 9865 888999999988875 444455 58999999999999999999987 6788999999998666531 22210
Q ss_pred ---HHhhHHHhhhhhccccceeEEecCccchhhhhhcccCCC-cceEEEeecccccccccccccccccchhhhhcccceE
Q 047027 438 ---LRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRG-SKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSV 513 (692)
Q Consensus 438 ---l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l 513 (692)
+....-+.+..+ ...-..+ ......+.+..+ +..+.-..+...+..++... -+..-+..|..++.+
T Consensus 210 a~~~a~~~ietsgar-c~~p~rl-------~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~--cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 210 ADDLAMNPIETSGAR-CVSPYRL-------YYKRINQEDARKFLCSLESLPSRLSSEDFPDSI--CPAKCFKKLPNLRKL 279 (498)
T ss_pred hhHHhhchhhcccce-ecchHHH-------HHHHhcccchhhhhhhHHhHHHhhccccCcCCc--ChHHHHhhcccceEe
Confidence 000000011111 0000000 000000000000 11100000011111122111 222336777888888
Q ss_pred EeecccccCCCCc-cccccccccceeccccchhhhhhcCCcccCCcc--cccccCceeEEEEeccCCccccchhchHHhh
Q 047027 514 CLFACKICEREEP-IVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN--IGKFSHDLKVIRFIYCGNLKNLFSLRLLPAL 590 (692)
Q Consensus 514 ~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~--l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L 590 (692)
+|++..+....+. +.....++.|.+.++.. +.+.. +..+. .|+.|+|++ +.++.+.| +.+..+
T Consensus 280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l-----------~~v~~~~f~~ls-~L~tL~L~~-N~it~~~~-~aF~~~ 345 (498)
T KOG4237|consen 280 NLSNNKITRIEDGAFEGAAELQELYLTRNKL-----------EFVSSGMFQGLS-GLKTLSLYD-NQITTVAP-GAFQTL 345 (498)
T ss_pred ccCCCccchhhhhhhcchhhhhhhhcCcchH-----------HHHHHHhhhccc-cceeeeecC-CeeEEEec-cccccc
Confidence 8888877664433 56667777777766542 22222 45566 888888887 45665534 356677
Q ss_pred cCcceeeccc
Q 047027 591 QNLEVLKVEG 600 (692)
Q Consensus 591 ~~L~~L~l~~ 600 (692)
.+|.+|.+-.
T Consensus 346 ~~l~~l~l~~ 355 (498)
T KOG4237|consen 346 FSLSTLNLLS 355 (498)
T ss_pred ceeeeeehcc
Confidence 7777777653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.7e-10 Score=118.45 Aligned_cols=143 Identities=27% Similarity=0.364 Sum_probs=122.6
Q ss_pred cceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc
Q 047027 288 LRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367 (692)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 367 (692)
.++..+|..+..+..++.++++.|.+..+|..++ .++ |++|.+++|+ ++.+|+.+ +...+|..||.++|.+..+|+
T Consensus 108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slps 183 (722)
T KOG0532|consen 108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPS 183 (722)
T ss_pred ccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchH
Confidence 3445667777788888999999999998888875 555 8999999886 88899887 688899999999999999999
Q ss_pred cccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 368 SVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 368 ~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
.++.+..|+.|+++. +.+..+| .++ --.|..||++.|++..+|-.+.+|+.|++|.|.+|.+.+-|.
T Consensus 184 ql~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRR-NHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HhhhHHHHHHHHHhh-hhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 999999999999998 5677777 777 456889999999999999999999999999999999998876
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=7.4e-10 Score=104.93 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=114.8
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 379 (692)
.+.++.+++++|.+..+..++. -.|.+|.|++++|+ +..+.. +..+.+|+.|||++|.+.++-.+-.+|-|.++|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVK-LAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchhhhhhhhh-hccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 4678899999999998887764 78999999999997 555544 4789999999999999888766667788999999
Q ss_pred ccCCCCCcCCCcccccccCCEEecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChh
Q 047027 380 LGMCGRLKRVPSVAKLLALQYLDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAA 437 (692)
Q Consensus 380 l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~ 437 (692)
+.+ +.++.+..+++|.+|..||+++|+|+++- .+||+|+.|.++.+.+|++..+|..
T Consensus 359 La~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 359 LAQ-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhh-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 999 67888888999999999999999998665 5799999999999999999888864
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=9.2e-10 Score=113.21 Aligned_cols=172 Identities=23% Similarity=0.322 Sum_probs=114.3
Q ss_pred cceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc
Q 047027 288 LRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367 (692)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 367 (692)
.++..+|.....+..+..+.+..|.+..+|..+. .+..|..++++.|+ +..+|..+ +.++ |++|-+++|+++.+|+
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-~L~~lt~l~ls~Nq-lS~lp~~l-C~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAIC-NLEALTFLDLSSNQ-LSHLPDGL-CDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhh-hhhHHHHhhhccch-hhcCChhh-hcCc-ceeEEEecCccccCCc
Confidence 3344555555555556666777777777766654 66777777777775 66666665 4444 7777777777777777
Q ss_pred cccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhh
Q 047027 368 SVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAA 446 (692)
Q Consensus 368 ~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~ 446 (692)
.|+.+.+|..|+.+.| .+..+| .++.+.+|+.|.++.|++..+|+++..|+ |..|++++|++..+|- .+.
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv-------~fr 231 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPV-------DFR 231 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecch-------hhh
Confidence 7777777777777763 455566 67777777777777777777777777553 7777777777777775 566
Q ss_pred hhhccccceeEEecCccchhhhhhccc
Q 047027 447 SLSDRLDSFEGHFFKLKDFNIYVKSAD 473 (692)
Q Consensus 447 ~L~~~L~~L~~~~~~~~~~~~~~~~~~ 473 (692)
+|+ .|++|-+..+.+..-+..+...+
T Consensus 232 ~m~-~Lq~l~LenNPLqSPPAqIC~kG 257 (722)
T KOG0532|consen 232 KMR-HLQVLQLENNPLQSPPAQICEKG 257 (722)
T ss_pred hhh-hheeeeeccCCCCCChHHHHhcc
Confidence 677 77777766665555444444333
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=5.4e-09 Score=108.23 Aligned_cols=109 Identities=25% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCccEEEccCCCcc----CCCchhHhhcCCCCcEEEccCCCCcc-------CCccccCCCCCcEEEccCCCCCcCCC-
Q 047027 323 HCEILSTLLLQRNGLL----QRIPECFFVHMHGLKVLNLSRTNIEV-------LPSSVSDLTNLRSLLLGMCGRLKRVP- 390 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~-------lp~~i~~l~~L~~L~l~~c~~~~~lp- 390 (692)
.+.+|+.+.+.+|... ..++.. +...+.++.|+++++.+.. ++..+..+++|+.|++++|......+
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 4556777777777521 122222 2455667777777766542 23345566677777777765443333
Q ss_pred ccccccc---CCEEecccCCCc-----ccCccccCC-CCCCEEEccCCCCC
Q 047027 391 SVAKLLA---LQYLDLEATGIE-----EVPEGMEML-ENLSHLYLYLPLLK 432 (692)
Q Consensus 391 ~~~~l~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~ 432 (692)
.+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 3444443 777777777655 122344555 67777777776665
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=5.6e-09 Score=108.10 Aligned_cols=157 Identities=19% Similarity=0.138 Sum_probs=101.3
Q ss_pred cccccEEEeecCCcc-----ccCCCCCCCCCCccEEEccCCCccC------CCchhHhhcCCCCcEEEccCCCCc-cCCc
Q 047027 300 EENLERVSLMRNNIE-----EIPSNMSPHCEILSTLLLQRNGLLQ------RIPECFFVHMHGLKVLNLSRTNIE-VLPS 367 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~-~lp~ 367 (692)
..+++.+++.++.+. .++..+ ...++++.+++.++.... .++ ..+..+++|+.|++++|.+. ..+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHH
Confidence 455788888888863 344333 266778999998875321 122 23467889999999999876 3444
Q ss_pred cccCCCC---CcEEEccCCCCCc----CCC-ccccc-ccCCEEecccCCCc-----ccCccccCCCCCCEEEccCCCCCC
Q 047027 368 SVSDLTN---LRSLLLGMCGRLK----RVP-SVAKL-LALQYLDLEATGIE-----EVPEGMEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 368 ~i~~l~~---L~~L~l~~c~~~~----~lp-~~~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~ 433 (692)
.+..+.+ |++|++++|.... .+. .+..+ ++|+.|++++|.+. .++..+..+++|++|++..+.++.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 4555554 9999999875431 122 35566 89999999999877 344556777889999998887763
Q ss_pred CChhHHhhHHHhhhhhccccceeEEecC
Q 047027 434 FPAALRETVEEAASLSDRLDSFEGHFFK 461 (692)
Q Consensus 434 lp~~l~~~~~~l~~L~~~L~~L~~~~~~ 461 (692)
- .+......+..+. .|+.|.+..+.
T Consensus 180 ~--~~~~l~~~l~~~~-~L~~L~L~~n~ 204 (319)
T cd00116 180 A--GIRALAEGLKANC-NLEVLDLNNNG 204 (319)
T ss_pred H--HHHHHHHHHHhCC-CCCEEeccCCc
Confidence 1 0111222344444 56666554433
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=2.2e-08 Score=91.39 Aligned_cols=125 Identities=25% Similarity=0.282 Sum_probs=37.1
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cc-cccccCCEEec
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SV-AKLLALQYLDL 403 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~-~~l~~L~~L~l 403 (692)
+++.|+|.+|. +..+.. .-..+.+|+.|++++|.|+.++ .+..+.+|++|++++ +.+..++ .+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccc-cccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence 45556666554 333321 1113455666666666665553 455566666666665 3444454 33 24566666666
Q ss_pred ccCCCcccC--ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 404 EATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 404 ~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
++|++..+- ..+..+++|+.|++.+|++...+. .-..-+..++ +|+.|+..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~---YR~~vi~~lP-~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN---YRLFVIYKLP-SLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT---HHHHHHHH-T-T-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhh---HHHHHHHHcC-hhheeCCE
Confidence 666555433 234556666666666666654442 1222344555 55555554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=6e-08 Score=88.58 Aligned_cols=121 Identities=25% Similarity=0.341 Sum_probs=50.4
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccc-cCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSV-SDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~ 379 (692)
..++.|++.++.++.+. .+...+.+|+.|++++|. +..+.. +..++.|+.|++++|.|+++++.+ ..+++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 35688899999888763 343357788999999886 666654 477888999999999988886655 3588999999
Q ss_pred ccCCCCCcCCC---cccccccCCEEecccCCCcccCc----cccCCCCCCEEEc
Q 047027 380 LGMCGRLKRVP---SVAKLLALQYLDLEATGIEEVPE----GMEMLENLSHLYL 426 (692)
Q Consensus 380 l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l 426 (692)
+++ +.+..+. .++.+++|++|++.+|.+..-+. -+..+++|+.|+-
T Consensus 95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 987 4565555 46778889999999887776553 2577888888885
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=1.2e-05 Score=95.75 Aligned_cols=244 Identities=14% Similarity=0.191 Sum_probs=146.3
Q ss_pred CEEEec-CCCCHHHHHHHHHHHhhhhhhcc-------------chHHHHHHHHHHHHHh-CCeEEEEecCccCcCC--cc
Q 047027 1 IWVTVS-QPLDLFKLQTEIATALKQSLLEN-------------EDKVRRAGRLLGMLKA-KEKFVLILDDTWEAFP--LE 63 (692)
Q Consensus 1 ~wv~vs-~~~~~~~l~~~i~~~l~~~~~~~-------------~~~~~~~~~~~~~l~~-~kr~LlVlDdv~~~~~--~~ 63 (692)
+|+++. .+-+...+...++..+....... .........+...+.. +.+++|||||+...++ ..
T Consensus 60 ~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~ 139 (903)
T PRK04841 60 GWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIH 139 (903)
T ss_pred EEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHH
Confidence 599996 55577777777777774321110 1112233344455433 5789999999976431 11
Q ss_pred -cccCCCCCCCCCeEEEEEecchhhhcc--cc-cccee-ec----cCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHH
Q 047027 64 -EVGIPEPNEENGCKLVITTRSHTVCRS--MK-CKQVV-VE----LLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVE 134 (692)
Q Consensus 64 -~l~~~~~~~~~gs~IivTTR~~~v~~~--~~-~~~~~-l~----~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 134 (692)
.+..-+.....+-++|||||...-... .. ..... +. +++.+|+..+|....+.. -..+.+.++.+
T Consensus 140 ~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~ 213 (903)
T PRK04841 140 EAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCD 213 (903)
T ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHH
Confidence 222112222367789899998532211 11 11122 44 899999999998776543 12456788999
Q ss_pred HhCCchhHHHHHHHHhcCCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhc-cccCCChhhhHHHhHhcCCCCCCccC
Q 047027 135 ECGRLPLAIVTVAASMSGEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFS-YHRLKDEKLQQCFLYCALYPEDFAIP 213 (692)
Q Consensus 135 ~c~glPlal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s-y~~L~~~~~k~~fl~la~fp~~~~i~ 213 (692)
.|+|.|+++..++..+....... ......+.. ....++...+.-. |+.|| +..+..+...|++++ ++
T Consensus 214 ~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~~---~~ 281 (903)
T PRK04841 214 DVEGWATALQLIALSARQNNSSL--HDSARRLAG------INASHLSDYLVEEVLDNVD-LETRHFLLRCSVLRS---MN 281 (903)
T ss_pred HhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC------CCchhHHHHHHHHHHhcCC-HHHHHHHHHhccccc---CC
Confidence 99999999999888775532100 011111100 0112355544433 78999 899999999999873 33
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHHHhhcccccc--CCCCEEEehHHHHHHHHHHh
Q 047027 214 KDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA--EDGSCVKMHDLIRDMALRIT 276 (692)
Q Consensus 214 ~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~--~~~~~~~mhdl~~~~~~~~~ 276 (692)
. .+.. .+... +.+...+++|.+.+++... .++..|+.|++++++.....
T Consensus 282 ~-~l~~-----~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 282 D-ALIV-----RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred H-HHHH-----HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 2 2222 11111 2346678999999986542 33357889999999998765
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.29 E-value=4.4e-07 Score=96.88 Aligned_cols=161 Identities=26% Similarity=0.345 Sum_probs=106.5
Q ss_pred CcceeecCCcccccc-cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 287 GLRLLKFPGEQEWEE-NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
...+..++....... +++.+++..|.+..+|.... .+++|+.|++..|. +..+|... ...+.|+.|++++|.+..+
T Consensus 125 ~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred CcccccCccccccchhhcccccccccchhhhhhhhh-ccccccccccCCch-hhhhhhhh-hhhhhhhheeccCCccccC
Confidence 344445554444443 67777777777777654443 67777777777775 66666543 3667777777777777777
Q ss_pred CccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHh
Q 047027 366 PSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEA 445 (692)
Q Consensus 366 p~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l 445 (692)
|..+..+.+|++|.++++..+..+..+.++.++..+.+.++.+..++..++.+.+++.|++++|.+..++. +
T Consensus 202 ~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--------~ 273 (394)
T COG4886 202 PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--------L 273 (394)
T ss_pred chhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--------c
Confidence 77666666777777776433333336777777777777777766667777777777777777777776662 5
Q ss_pred hhhhccccceeEEe
Q 047027 446 ASLSDRLDSFEGHF 459 (692)
Q Consensus 446 ~~L~~~L~~L~~~~ 459 (692)
+.+. .++.+.+..
T Consensus 274 ~~~~-~l~~L~~s~ 286 (394)
T COG4886 274 GSLT-NLRELDLSG 286 (394)
T ss_pred cccC-ccCEEeccC
Confidence 5666 666666644
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.6e-06 Score=95.49 Aligned_cols=85 Identities=27% Similarity=0.433 Sum_probs=50.6
Q ss_pred CcEEEccCCCCc-cCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCc-ccCccccCCCCCCEEEccC
Q 047027 352 LKVLNLSRTNIE-VLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE-EVPEGMEMLENLSHLYLYL 428 (692)
Q Consensus 352 L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 428 (692)
++.|+|+++.+. .+|..++.+.+|+.|++++|.....+| .++.+++|++|++++|.+. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455666666655 455566666666666666654444555 5666666666666666555 5566666666666666665
Q ss_pred CCCC-CCCh
Q 047027 429 PLLK-KFPA 436 (692)
Q Consensus 429 ~~~~-~lp~ 436 (692)
|.+. .+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 5553 4454
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.3e-06 Score=65.18 Aligned_cols=57 Identities=37% Similarity=0.494 Sum_probs=32.7
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEEccCC
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLLGMC 383 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~c 383 (692)
+|++|++.+|. +..+|...|..+++|++|++++|.++.++ ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45556666553 55555555556666666666666655553 34556666666666654
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=1.1e-06 Score=65.74 Aligned_cols=58 Identities=36% Similarity=0.501 Sum_probs=29.0
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
++.|++++|.+..+|...+..+++|++|++++|. +..+++..|.++++|++|++++|.
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 4445555555555554444455555555555443 444444444555555555555543
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.1e-07 Score=92.10 Aligned_cols=160 Identities=23% Similarity=0.208 Sum_probs=101.0
Q ss_pred cccccccEEEeecCCccccCC-CCCCCCCCccEEEccCCCccCCC--chhHhhcCCCCcEEEccCCCCccCCcc--ccCC
Q 047027 298 EWEENLERVSLMRNNIEEIPS-NMSPHCEILSTLLLQRNGLLQRI--PECFFVHMHGLKVLNLSRTNIEVLPSS--VSDL 372 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l 372 (692)
...++++.+++.++.+...+. ...+.|++++.|+|++|- +... -..+...+++|+.|+++.|.+....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 345678888888888765543 455688999999999884 2221 124457889999999999887643322 2357
Q ss_pred CCCcEEEccCCCCCcC-CC-cccccccCCEEecccCC-CcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhh
Q 047027 373 TNLRSLLLGMCGRLKR-VP-SVAKLLALQYLDLEATG-IEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLS 449 (692)
Q Consensus 373 ~~L~~L~l~~c~~~~~-lp-~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~ 449 (692)
.+|+.|.+++|..-.. +- -....++|+.|++.+|. +..--.....+..|+.|+|++|++-.++. +..++.++
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~-----~~~~~~l~ 271 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ-----GYKVGTLP 271 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc-----cccccccc
Confidence 7888888888854321 11 24567788888888873 32211223345678888888877766653 12345555
Q ss_pred ccccceeEEecCccc
Q 047027 450 DRLDSFEGHFFKLKD 464 (692)
Q Consensus 450 ~~L~~L~~~~~~~~~ 464 (692)
.|+.|.+..+++.+
T Consensus 272 -~L~~Lnls~tgi~s 285 (505)
T KOG3207|consen 272 -GLNQLNLSSTGIAS 285 (505)
T ss_pred -chhhhhccccCcch
Confidence 55555555444443
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=4.7e-07 Score=86.23 Aligned_cols=122 Identities=25% Similarity=0.267 Sum_probs=52.9
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCc-ccccccCCEEecc
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPS-VAKLLALQYLDLE 404 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~-~~~l~~L~~L~l~ 404 (692)
.|+.+++++|. +..+.+++ .-.+.+|+|++++|.+..+- .+..|++|+.||+++| .+..+.. -.+|-|.++|.+.
T Consensus 285 ~LtelDLS~N~-I~~iDESv-KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNL-ITQIDESV-KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccc-hhhhhhhh-hhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 34444444443 44444433 33444555555555444332 2444444555555442 2333221 1233444444454
Q ss_pred cCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 405 ATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 405 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
+|.++.+ .++++|-+|..|++++|++..+- ...++++|. .|+++.+.
T Consensus 361 ~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ld-----eV~~IG~LP-CLE~l~L~ 407 (490)
T KOG1259|consen 361 QNKIETL-SGLRKLYSLVNLDLSSNQIEELD-----EVNHIGNLP-CLETLRLT 407 (490)
T ss_pred hhhHhhh-hhhHhhhhheeccccccchhhHH-----Hhccccccc-HHHHHhhc
Confidence 4444443 24445555555555555444322 133444444 44444443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.08 E-value=2.5e-06 Score=91.07 Aligned_cols=151 Identities=30% Similarity=0.419 Sum_probs=92.8
Q ss_pred ccccEEEeecCCccccCCCCCCCCC-CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCE-ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 379 (692)
..++.+.+.++.+..++.... ... +|+.|++.+|. +..+|..+ ..++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccc-cchhhcccccccccc-hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 446666666676666665543 332 67777777665 55554333 667777777777777777666655666777777
Q ss_pred ccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 380 LGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 380 l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
+++ +.+..+| .++.+..|+++.+.+|.+..++..+.++.++..+.+.++.+..++. .++.+. .++.|.+.
T Consensus 193 ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~-------~~~~l~-~l~~L~~s 263 (394)
T COG4886 193 LSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE-------SIGNLS-NLETLDLS 263 (394)
T ss_pred ccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccc-------hhcccc-ccceeccc
Confidence 776 4566666 4456666777777766555566666666666666666666554443 345555 56666555
Q ss_pred ecCcc
Q 047027 459 FFKLK 463 (692)
Q Consensus 459 ~~~~~ 463 (692)
.+.+.
T Consensus 264 ~n~i~ 268 (394)
T COG4886 264 NNQIS 268 (394)
T ss_pred ccccc
Confidence 44443
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.4e-05 Score=82.26 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=59.1
Q ss_pred hcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccC-CCcccCccccCCCCCCEE
Q 047027 347 VHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEAT-GIEEVPEGMEMLENLSHL 424 (692)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L 424 (692)
..++++..|++++|.++.+|. -..+|+.|.+++|+.+..+| .+ ..+|++|++++| .+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 456889999999998888882 23469999999999998888 45 368999999998 78788754 5666
Q ss_pred EccCCC---CCCCCh
Q 047027 425 YLYLPL---LKKFPA 436 (692)
Q Consensus 425 ~l~~~~---~~~lp~ 436 (692)
.+.++. +..+|+
T Consensus 118 ~L~~n~~~~L~~LPs 132 (426)
T PRK15386 118 EIKGSATDSIKNVPN 132 (426)
T ss_pred EeCCCCCcccccCcc
Confidence 665543 455554
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=4.7e-07 Score=90.88 Aligned_cols=136 Identities=24% Similarity=0.299 Sum_probs=65.9
Q ss_pred cccccEEEeecCCccccC-CCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC-CccCCccccCCCCCcE
Q 047027 300 EENLERVSLMRNNIEEIP-SNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN-IEVLPSSVSDLTNLRS 377 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~ 377 (692)
+++++.|+++.|.+.... +.....+++++.|.+++|+....--..+...++.|..|+|.+|. +..--.+..-+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 345555555555543211 11111344555555555553211111223455566666666653 2111112233555666
Q ss_pred EEccCCCCCcCCC---cccccccCCEEecccCCCccc--Ccc-----ccCCCCCCEEEccCCCCCCCCh
Q 047027 378 LLLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEV--PEG-----MEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 378 L~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~l--p~~-----i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
|+|++|+.+ ..+ ..+.++.|..|++..|++.++ |+. .....+|+.|++..|++..+++
T Consensus 251 LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 251 LDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 666664333 333 356666666666666666532 322 2345666667766666655553
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.5e-07 Score=89.58 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred CCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCccccCCCCCcEEEccCCCCCcCCC-c--ccccccCCE
Q 047027 325 EILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSSVSDLTNLRSLLLGMCGRLKRVP-S--VAKLLALQY 400 (692)
Q Consensus 325 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~c~~~~~lp-~--~~~l~~L~~ 400 (692)
+.++.|+|+.......-...+++++.+|+.|.+.|+.+. .+-..|.+=.+|+.|++++|+.++... . +.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357777777665444444556678888888888888865 334456667788888888888887665 2 677888888
Q ss_pred EecccCCCc
Q 047027 401 LDLEATGIE 409 (692)
Q Consensus 401 L~l~~~~l~ 409 (692)
|++++|.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 888887543
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.95 E-value=1.9e-05 Score=88.66 Aligned_cols=104 Identities=24% Similarity=0.341 Sum_probs=88.0
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEec
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDL 403 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l 403 (692)
.++.|+|.+|.....+|..+ ..+++|+.|+|++|.+. .+|..++.+.+|++|++++|.....+| .++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 47789999998666778775 89999999999999987 788889999999999999987777888 7999999999999
Q ss_pred ccCCCc-ccCccccCC-CCCCEEEccCCC
Q 047027 404 EATGIE-EVPEGMEML-ENLSHLYLYLPL 430 (692)
Q Consensus 404 ~~~~l~-~lp~~i~~l-~~L~~L~l~~~~ 430 (692)
++|.+. .+|..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 999887 888887654 467778887664
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=3e-07 Score=91.79 Aligned_cols=124 Identities=17% Similarity=0.326 Sum_probs=82.3
Q ss_pred ccccccccceeccccchhhhhhcCCcccCCcccc-cccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchh
Q 047027 528 VLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIG-KFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEE 606 (692)
Q Consensus 528 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~-~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~ 606 (692)
+..++|+.|.+.+|...+.. ++..++ +.+ .|+.+++..|....+-.....-++.+.|+.|.++.|..++.
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~--------~ft~l~rn~~-~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDR--------GFTMLGRNCP-HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred cCCCceEEEeccccchhhhh--------hhhhhhcCCh-hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 34578888888888865432 233333 344 78889998887666542222345678899999999877765
Q ss_pred hhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccc
Q 047027 607 IVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKR 672 (692)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 672 (692)
--..... ....+...|+.+++.+||.+.+-..+ ....+++|+.+++.+|....+
T Consensus 388 ~gi~~l~-----------~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 388 EGIRHLS-----------SSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhh-----------hccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhh
Confidence 4111000 12235778899999999987766541 344578899999999987765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.1e-06 Score=83.96 Aligned_cols=184 Identities=17% Similarity=0.128 Sum_probs=115.1
Q ss_pred CCcEEEccCCCCCcCC--C-cccccccCCEEecccCCCc-ccCccccCCCCCCEEEccCC-CCCCCChhHHhhHHHhhhh
Q 047027 374 NLRSLLLGMCGRLKRV--P-SVAKLLALQYLDLEATGIE-EVPEGMEMLENLSHLYLYLP-LLKKFPAALRETVEEAASL 448 (692)
Q Consensus 374 ~L~~L~l~~c~~~~~l--p-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~-~~~~lp~~l~~~~~~l~~L 448 (692)
.|++|||+. ..++.- - -++.+.+|+.|.+.|..+. .+-..|.+=.+|+.|+++.+ .+++.. .-.-+.++
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-----~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-----LQLLLSSC 259 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-----HHHHHHhh
Confidence 488888886 333321 1 2667788888888888766 44456677778888888543 333211 11234666
Q ss_pred hccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccc
Q 047027 449 SDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIV 528 (692)
Q Consensus 449 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~ 528 (692)
+ .|..|+++|+.+......+.- ..
T Consensus 260 s-~L~~LNlsWc~l~~~~Vtv~V-------------------------------------------------------~h 283 (419)
T KOG2120|consen 260 S-RLDELNLSWCFLFTEKVTVAV-------------------------------------------------------AH 283 (419)
T ss_pred h-hHhhcCchHhhccchhhhHHH-------------------------------------------------------hh
Confidence 6 777888877766543211100 11
Q ss_pred cccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhh
Q 047027 529 LPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEI 607 (692)
Q Consensus 529 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l 607 (692)
.-++|..|.++||...-.. ..+.. ....| +|.+|+|++|..+++ ..+..+-+++.|++|.++.|+.+.--
T Consensus 284 ise~l~~LNlsG~rrnl~~-------sh~~tL~~rcp-~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQK-------SHLSTLVRRCP-NLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPE 354 (419)
T ss_pred hchhhhhhhhhhhHhhhhh-------hHHHHHHHhCC-ceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChH
Confidence 2256777778777632111 12222 24566 999999999988877 24555677889999999999876432
Q ss_pred hccCcchhhhhhcccceeeeeccCCcceeecCCCCC
Q 047027 608 VAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPE 643 (692)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 643 (692)
.. ......|+|.+|++.+|-.
T Consensus 355 ~~---------------~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 355 TL---------------LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred He---------------eeeccCcceEEEEeccccC
Confidence 21 2444688899999888753
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=6.5e-05 Score=77.35 Aligned_cols=114 Identities=25% Similarity=0.390 Sum_probs=69.2
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCC-CCccCCccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRT-NIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~ 379 (692)
.++++|+++++.+..+|. + -++|++|.+.+|..+..+|..+ ..+|++|++++| .+..+|.+ |+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 456778888777777762 1 2357788887776666666543 356778888777 46666654 34444
Q ss_pred ccC--CCCCcCCC-ccccc------------------ccCCEEecccCCCcccCccccCCCCCCEEEccCC
Q 047027 380 LGM--CGRLKRVP-SVAKL------------------LALQYLDLEATGIEEVPEGMEMLENLSHLYLYLP 429 (692)
Q Consensus 380 l~~--c~~~~~lp-~~~~l------------------~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 429 (692)
+.+ |..+..+| ++..| .+|++|++.+|....+|..+. .+|+.|.++.+
T Consensus 119 L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 443 23345555 33322 367778877776555555444 46777776544
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=4.9e-05 Score=51.92 Aligned_cols=33 Identities=39% Similarity=0.528 Sum_probs=19.0
Q ss_pred CCcEEEccCCCCccCCccccCCCCCcEEEccCC
Q 047027 351 GLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMC 383 (692)
Q Consensus 351 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c 383 (692)
+|++|++++|.|+.+|+.+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456666666666666555666666666666654
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=4.4e-05 Score=52.13 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=26.6
Q ss_pred ccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 396 LALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 396 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
++|++|++++|+++.+|..+++|++|+.|++++|+++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3567777777777777766777777777777777766554
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.4e-05 Score=86.35 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=89.0
Q ss_pred ccccEEEeecCCcc--ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 301 ENLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 301 ~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.++++|++++...- ..|..+...+|.|++|.+.+-.....--...+.++++|+.||+++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46778888775422 223334456889999999876432222223457889999999999999888 689999999999
Q ss_pred EccCCCCCcCCC---cccccccCCEEecccCCCcccCc-------cccCCCCCCEEEccCCCC
Q 047027 379 LLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEVPE-------GMEMLENLSHLYLYLPLL 431 (692)
Q Consensus 379 ~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~~~~ 431 (692)
.+++ -.++.-+ .+.+|++|++||++......-+. --..|++||.|+.+++.+
T Consensus 201 ~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8886 3344333 57889999999999864333221 112488999999876654
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=9.1e-05 Score=82.97 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=97.9
Q ss_pred CCCccEEEccCCCccC-CCchhHhhcCCCCcEEEccCCCCc--cCCccccCCCCCcEEEccCCCCCcCCCcccccccCCE
Q 047027 324 CEILSTLLLQRNGLLQ-RIPECFFVHMHGLKVLNLSRTNIE--VLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQY 400 (692)
Q Consensus 324 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~ 400 (692)
-.+|+.|+++|...+. .-|..+...+|.|+.|.+++-.+. .+-.-..++++|+.||+++ +++..+-.+++|++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHH
Confidence 3578999998876433 344555567899999999886643 3334456789999999998 67777778999999999
Q ss_pred EecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccc
Q 047027 401 LDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 401 L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
|.+++=.++.-. ..+.+|++|++||++......-+..+.....--..|. +|+-|+++......
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhH
Confidence 999876655433 4678899999999987666555533222222223466 78888887555443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.40 E-value=2.5e-05 Score=83.56 Aligned_cols=129 Identities=26% Similarity=0.339 Sum_probs=75.5
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
..+..+.+..|.+..+-..+ ..+.++..+++.+|. +..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l-~~~~~l~~l~l~~n~-i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHL-SKLKSLEALDLYDNK-IEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhhhhccc-ccccceeeeeccccc-hhhcccc-hhhhhcchheecccccccccc-chhhccchhhhee
Confidence 34444555555555422222 255667777777665 4444332 255667777777777766653 4556666777777
Q ss_pred cCCCCCcCCCcccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCC
Q 047027 381 GMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKF 434 (692)
Q Consensus 381 ~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~l 434 (692)
.+ +.+..++.+..+.+|+.+++.+|.+..+... +..+.+++.+.+..|.+..+
T Consensus 148 ~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 148 SG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 76 4556666666667777777777766655543 35566666666666655533
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=8.3e-06 Score=87.00 Aligned_cols=130 Identities=23% Similarity=0.223 Sum_probs=92.6
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 379 (692)
..+...++++|.+..+...+- -++.++.|+|++|+ +..+. ++..+++|++|||++|.+..+|.- ...+ +|+.|+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ-LLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhh-hhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 356677778887766555443 56788888888886 44443 457888888888888888877653 2233 388888
Q ss_pred ccCCCCCcCCCcccccccCCEEecccCCCcccC--ccccCCCCCCEEEccCCCCCCCCh
Q 047027 380 LGMCGRLKRVPSVAKLLALQYLDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 380 l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+++ +-++.+-++.+|.+|+.||++.|-+.... .-++.|..|+.|.|.+|++..-|.
T Consensus 239 lrn-N~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 239 LRN-NALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred ecc-cHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 887 56777778888888888888888555332 235677788888888888776663
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=6.4e-06 Score=87.83 Aligned_cols=125 Identities=29% Similarity=0.306 Sum_probs=86.6
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEec
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDL 403 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l 403 (692)
.|.+.++++|. +..+..++ .-++.|+.|+|++|.++..- .+..|++|++|||++ +.++.+| +...+. |+.|.+
T Consensus 165 ~L~~a~fsyN~-L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNR-LVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhh-HHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeee
Confidence 34455555554 44444433 66778889999999888764 778888999999988 5788888 333444 899999
Q ss_pred ccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCc
Q 047027 404 EATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 404 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~ 462 (692)
++|.++++ .+|.+|.+|++|+++.|-+..... ..-++.|. .|..|.+..+.+
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs-~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLS-SLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHH-HHHHHhhcCCcc
Confidence 99888877 478889999999998776654432 22355566 666666654433
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.36 E-value=7.6e-06 Score=81.99 Aligned_cols=261 Identities=19% Similarity=0.182 Sum_probs=143.3
Q ss_pred CccEEEccCCCccCCCc-hhHhhcCCCCcEEEccCCC-Cc--cCCccccCCCCCcEEEccCCCCCcCCC-c--ccccccC
Q 047027 326 ILSTLLLQRNGLLQRIP-ECFFVHMHGLKVLNLSRTN-IE--VLPSSVSDLTNLRSLLLGMCGRLKRVP-S--VAKLLAL 398 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~-~~--~lp~~i~~l~~L~~L~l~~c~~~~~lp-~--~~~l~~L 398 (692)
.|+.|.+.||.....-+ ..+..+++++.+|++.++. ++ .+-+.-..+.+|+++++..|..++..- . ...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47788888886544322 2233577888888888876 43 222223457888888888887776554 2 3457788
Q ss_pred CEEecccC-CCcc--cCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccchhhhhhcccCC
Q 047027 399 QYLDLEAT-GIEE--VPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGR 475 (692)
Q Consensus 399 ~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~ 475 (692)
++|++++| .++. +-.-.....+++.+.+.++ .+.+. ..+.... ..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~e~~l------e~l~~~~------------------------~~ 266 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--LELEL------EALLKAA------------------------AY 266 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc--ccccH------HHHHHHh------------------------cc
Confidence 88888877 4443 1111122222333322221 11110 0000000 00
Q ss_pred CcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCc---cccccccccceeccccchhhhhhcCC
Q 047027 476 GSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEP---IVLPEDVQFLQMNRVHDVASLNDVLP 552 (692)
Q Consensus 476 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~ 552 (692)
... +..+++..|........ ...+..|+.|..++|..++.-
T Consensus 267 ~~~-------------------------------i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~----- 310 (483)
T KOG4341|consen 267 CLE-------------------------------ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE----- 310 (483)
T ss_pred ChH-------------------------------hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH-----
Confidence 000 00111111111111000 223466777777777654321
Q ss_pred cccCCccc-ccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccC
Q 047027 553 REQGLVNI-GKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLP 631 (692)
Q Consensus 553 ~l~~l~~l-~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 631 (692)
.+-.+ ...+ +|+.|.+..|..+++.--...-.+.+.|+.+++.+|.....-... .-..+.|
T Consensus 311 ---~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~--------------sls~~C~ 372 (483)
T KOG4341|consen 311 ---VLWALGQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA--------------SLSRNCP 372 (483)
T ss_pred ---HHHHHhcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh--------------hhccCCc
Confidence 11112 3445 999999999988777421111236678999999998776553111 1233689
Q ss_pred CcceeecCCCCCcceec---cCCceeecCCcceEEEcCCCCccc
Q 047027 632 RLKKLRFSKLPEFKSVC---SNNGVLVCNSLQEIKVYGCPKLKR 672 (692)
Q Consensus 632 ~L~~L~l~~~~~L~~~~---~~~~~~~~~~L~~L~i~~C~~L~~ 672 (692)
.|++|.++.|....+-. ...+...+..|+.+.+.+||.+..
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 99999999998766541 112455677899999999998764
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.35 E-value=4.6e-05 Score=81.58 Aligned_cols=105 Identities=29% Similarity=0.376 Sum_probs=54.4
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 379 (692)
+.++..+++..|.+..+...+ ..+++|++|++++|. +..+.. +..+..|+.|++++|.+..+. .+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcccch-hhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 445555666666555543321 245566666666654 444332 244555666666666655443 334455566666
Q ss_pred ccCCCCCcCCCc--ccccccCCEEecccCCCcc
Q 047027 380 LGMCGRLKRVPS--VAKLLALQYLDLEATGIEE 410 (692)
Q Consensus 380 l~~c~~~~~lp~--~~~l~~L~~L~l~~~~l~~ 410 (692)
+++| .+..++. ...+.+|+.+++.++.+..
T Consensus 169 l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 169 LSYN-RIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred CCcc-hhhhhhhhhhhhccchHHHhccCCchhc
Confidence 6653 3333333 3555566666665555443
No 55
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.23 E-value=0.011 Score=65.56 Aligned_cols=241 Identities=17% Similarity=0.224 Sum_probs=149.5
Q ss_pred CEEEecCC-CCHHHHHHHHHHHhhhhhhccc-------------hHHHHHHHHHHHHHh-CCeEEEEecCccCcC-----
Q 047027 1 IWVTVSQP-LDLFKLQTEIATALKQSLLENE-------------DKVRRAGRLLGMLKA-KEKFVLILDDTWEAF----- 60 (692)
Q Consensus 1 ~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~~-------------~~~~~~~~~~~~l~~-~kr~LlVlDdv~~~~----- 60 (692)
.|.+.+.+ .+...+..-++..++.-....- +-......++.++-+ .+...+||||..-..
T Consensus 68 ~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~ 147 (894)
T COG2909 68 AWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALH 147 (894)
T ss_pred eEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHH
Confidence 48887654 5677788888777764322211 122334444444422 367899999975421
Q ss_pred -CcccccCCCCCCCCCeEEEEEecchhhhccc--ccc-cee-e----ccCChHhHHHHHHhhhcCCCCCCchhHHHHHHH
Q 047027 61 -PLEEVGIPEPNEENGCKLVITTRSHTVCRSM--KCK-QVV-V----ELLSKQEAFNLFIDGVGNSILQVPALNKEIINE 131 (692)
Q Consensus 61 -~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~--~~~-~~~-l----~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~ 131 (692)
.++.+....| .+-..|||||...-.... ... ... + =.++.+|+-.+|....+.. -.+..++.
T Consensus 148 ~~l~fLl~~~P---~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~ 218 (894)
T COG2909 148 EALRFLLKHAP---ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKA 218 (894)
T ss_pred HHHHHHHHhCC---CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHH
Confidence 1333444444 688999999997543321 111 111 2 2478899999998877543 33567889
Q ss_pred HHHHhCCchhHHHHHHHHhcCCcCHHHHHHHHHHHhhccccCCCchhhhhhhh-hhccccCCChhhhHHHhHhcCCCCCC
Q 047027 132 VVEECGRLPLAIVTVAASMSGEEEIHEWRNALNELRGLVRSRNGVNADVLGRL-EFSYHRLKDEKLQQCFLYCALYPEDF 210 (692)
Q Consensus 132 i~~~c~glPlal~~~g~~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l-~~sy~~L~~~~~k~~fl~la~fp~~~ 210 (692)
+.++..|.+-|+..++=+++++.+.+.--..+... ..-+.+.+ .-=+|.|| +++|..++-+|+++.-.
T Consensus 219 L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~----------~~~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f~ 287 (894)
T COG2909 219 LYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGA----------ASHLSDYLVEEVLDRLP-PELRDFLLQTSVLSRFN 287 (894)
T ss_pred HHhhcccHHHHHHHHHHHccCCCcHHHHhhhccch----------HHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHhh
Confidence 99999999999999888888443433222211111 11122211 12357788 78899888888876531
Q ss_pred ccCHHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHHHhhccccc--cCCCCEEEehHHHHHHHHHHhcC
Q 047027 211 AIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLES--AEDGSCVKMHDLIRDMALRITSE 278 (692)
Q Consensus 211 ~i~~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~--~~~~~~~~mhdl~~~~~~~~~~~ 278 (692)
++|+..- ..++.|..++++|.+++++-. .+.+..|+.|.++.++.+.....
T Consensus 288 ----~eL~~~L-------------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 288 ----DELCNAL-------------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ----HHHHHHH-------------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3333322 223567788999999999874 35568899999999999866544
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00016 Score=69.53 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=13.4
Q ss_pred ccCCcceeecCCCCCcceecc
Q 047027 629 TLPRLKKLRFSKLPEFKSVCS 649 (692)
Q Consensus 629 ~~~~L~~L~l~~~~~L~~~~~ 649 (692)
.||+|..|++.+.|-+..+..
T Consensus 247 ~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 247 GFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCchhheeeccCCcccccccC
Confidence 577777777776665555543
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.12 E-value=0.00018 Score=70.80 Aligned_cols=42 Identities=14% Similarity=-0.101 Sum_probs=21.1
Q ss_pred CCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecC
Q 047027 417 MLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFK 461 (692)
Q Consensus 417 ~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~ 461 (692)
.-++|+++....|++..-+. ......+...+ .|+.+.+..++
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga--~~~A~~~~~~~-~leevr~~qN~ 196 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGA--TALAEAFQSHP-TLEEVRLSQNG 196 (382)
T ss_pred CCcceEEEEeeccccccccH--HHHHHHHHhcc-ccceEEEeccc
Confidence 34566666666666665554 22223333334 55555554433
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.94 E-value=0.00011 Score=62.36 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=70.9
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEcc
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLG 381 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 381 (692)
+++.+++++|.+..+|..+...++-+++|++.+|. +.++|.++ ..|+.||.|+++.|.+...|.-|..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 46778889999998888887788888999999886 88899884 88999999999999988888888888888888877
Q ss_pred CCCCCcCCC
Q 047027 382 MCGRLKRVP 390 (692)
Q Consensus 382 ~c~~~~~lp 390 (692)
+ +-...+|
T Consensus 132 ~-na~~eid 139 (177)
T KOG4579|consen 132 E-NARAEID 139 (177)
T ss_pred C-CccccCc
Confidence 6 3445555
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=0.00011 Score=62.26 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=40.6
Q ss_pred CCcEEEccCCCCccCCccccCC-CCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccC
Q 047027 351 GLKVLNLSRTNIEVLPSSVSDL-TNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYL 428 (692)
Q Consensus 351 ~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 428 (692)
+|...+|++|.+..+|+.+... +.+.+|++.+ +.+..+| .+..++.|+.|+++.|.+...|.-|..|.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 3444455555555554443322 2444455544 3444444 44445555555555555555555454455555555544
Q ss_pred CCCCCCC
Q 047027 429 PLLKKFP 435 (692)
Q Consensus 429 ~~~~~lp 435 (692)
+....+|
T Consensus 133 na~~eid 139 (177)
T KOG4579|consen 133 NARAEID 139 (177)
T ss_pred CccccCc
Confidence 4444444
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.0012 Score=63.63 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCCccEEEccCCCccCCCc--hhHhhcCCCCcEEEccCCCCccCCccc-cCCCCCcEEEccCCCCCc--CCC-cccccc
Q 047027 323 HCEILSTLLLQRNGLLQRIP--ECFFVHMHGLKVLNLSRTNIEVLPSSV-SDLTNLRSLLLGMCGRLK--RVP-SVAKLL 396 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~l~~c~~~~--~lp-~~~~l~ 396 (692)
.+..++.++|.+|. +.... ..++.+|++|++|+++.|.+..--.+. -.+.+|++|-|.+ +.+. ... .+..++
T Consensus 69 ~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence 45566666666664 22211 123456666677777666543211111 2345666666655 2221 111 244455
Q ss_pred cCCEEecccCC
Q 047027 397 ALQYLDLEATG 407 (692)
Q Consensus 397 ~L~~L~l~~~~ 407 (692)
.++.|+++.|+
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 55555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.64 E-value=0.006 Score=55.73 Aligned_cols=99 Identities=22% Similarity=0.331 Sum_probs=52.0
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccC-CCCCcEEEccCCCCCcCCC---cccccccCCEE
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSD-LTNLRSLLLGMCGRLKRVP---SVAKLLALQYL 401 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~c~~~~~lp---~~~~l~~L~~L 401 (692)
+...++|+.|. +..++. |.+++.|..|.+..|.|+.+-+.+.. +++|..|.+.+| .+..+. .+..++.|++|
T Consensus 43 ~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccc-hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 34455555554 333332 34555666666666666655434333 445666666653 333333 34555666666
Q ss_pred ecccCCCcccCc----cccCCCCCCEEEccC
Q 047027 402 DLEATGIEEVPE----GMEMLENLSHLYLYL 428 (692)
Q Consensus 402 ~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 428 (692)
.+-+|.++.-+. -+.++++|+.|+...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666665554332 246667777777543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.63 E-value=0.0036 Score=57.17 Aligned_cols=103 Identities=25% Similarity=0.333 Sum_probs=65.7
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC--ccccCCCCCcE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP--SSVSDLTNLRS 377 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~ 377 (692)
..+...++++.|.+..++ .++.+++|.+|.+..|. +..+.+.+-..+++|..|.|.+|+|..+- ..+..++.|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhcc--cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 345556777777766543 23567777888777775 66665555455667778888877766542 23556777777
Q ss_pred EEccCCCCCcCCC-----cccccccCCEEecccC
Q 047027 378 LLLGMCGRLKRVP-----SVAKLLALQYLDLEAT 406 (692)
Q Consensus 378 L~l~~c~~~~~lp-----~~~~l~~L~~L~l~~~ 406 (692)
|.+-+|. ++..+ -+.++++|++||+.+-
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 7777743 33333 1667777888877653
No 63
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.57 E-value=0.05 Score=54.50 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhccchHHHHHHHH----HHHHHhCCeEEEEecCccCcC--CcccccCC---CCCCCCCeE
Q 047027 7 QPLDLFKLQTEIATALKQSLLENEDKVRRAGRL----LGMLKAKEKFVLILDDTWEAF--PLEEVGIP---EPNEENGCK 77 (692)
Q Consensus 7 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~----~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~---~~~~~~gs~ 77 (692)
...+..++++.|...++..... .........+ ......+++.++|+||++... .++.+... .........
T Consensus 80 ~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~ 158 (269)
T TIGR03015 80 TRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQ 158 (269)
T ss_pred CCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEE
Confidence 4457788888888887654322 2222222222 222335788999999998853 34443321 112223334
Q ss_pred EEEEecchhh--hcc-----cc--cccee-eccCChHhHHHHHHhhhcCCCC-CCchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 78 LVITTRSHTV--CRS-----MK--CKQVV-VELLSKQEAFNLFIDGVGNSIL-QVPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 78 IivTTR~~~v--~~~-----~~--~~~~~-l~~l~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
|++|....-. ... .. ....+ +++++.+|...++...+..... ....-.++....|++.++|.|..+..+
T Consensus 159 vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 159 IFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred EEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 5555543211 110 11 11233 8999999999998877543211 111133578999999999999999988
Q ss_pred HHHh
Q 047027 147 AASM 150 (692)
Q Consensus 147 g~~L 150 (692)
+..+
T Consensus 239 ~~~~ 242 (269)
T TIGR03015 239 CDRL 242 (269)
T ss_pred HHHH
Confidence 8765
No 64
>PF05729 NACHT: NACHT domain
Probab=95.91 E-value=0.017 Score=52.85 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=48.7
Q ss_pred HHhCCeEEEEecCccCcCC---------ccc-ccCCCCC-CCCCeEEEEEecchhh---hcccccccee-eccCChHhHH
Q 047027 43 LKAKEKFVLILDDTWEAFP---------LEE-VGIPEPN-EENGCKLVITTRSHTV---CRSMKCKQVV-VELLSKQEAF 107 (692)
Q Consensus 43 l~~~kr~LlVlDdv~~~~~---------~~~-l~~~~~~-~~~gs~IivTTR~~~v---~~~~~~~~~~-l~~l~~~~~~ 107 (692)
..+.+++++|+|++++... +.. +..-+.. ..++.+||||+|.... .........+ +.++++++..
T Consensus 77 ~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 77 LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHH
Confidence 3356899999999987533 111 1111111 2468999999999776 3333444455 9999999999
Q ss_pred HHHHhhh
Q 047027 108 NLFIDGV 114 (692)
Q Consensus 108 ~Lf~~~~ 114 (692)
+++.++.
T Consensus 157 ~~~~~~f 163 (166)
T PF05729_consen 157 QYLRKYF 163 (166)
T ss_pred HHHHHHh
Confidence 9997765
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.88 E-value=0.0015 Score=64.54 Aligned_cols=133 Identities=23% Similarity=0.234 Sum_probs=88.5
Q ss_pred cccccEEEeecCCccccCC----CCCCCCCCccEEEccCCCccCC---CchhHhhcCCCCcEEEccCCCCc-----cCCc
Q 047027 300 EENLERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNGLLQR---IPECFFVHMHGLKVLNLSRTNIE-----VLPS 367 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~-----~lp~ 367 (692)
.+.+|++...+|.+..-+. ..+...+.|+.+.+..|..-.. ....-+..+++|++|||.+|.++ .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 4578888888888764332 2334567888888888863211 11222478999999999999876 2344
Q ss_pred cccCCCCCcEEEccCCCCCcCCC-cc-----cccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCCC
Q 047027 368 SVSDLTNLRSLLLGMCGRLKRVP-SV-----AKLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 368 ~i~~l~~L~~L~l~~c~~~~~lp-~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~ 432 (692)
.+..+++|+.|++++|..-..=. .+ ...++|++|.+.+|.++. +-..+...+.|..|++++|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 56677889999999885332211 11 236788888888887662 2233555778888888888774
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.00084 Score=64.04 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=40.1
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc--cccCCCCCcEEE
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS--SVSDLTNLRSLL 379 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L~ 379 (692)
+++.|++.++.+..| .+..+++.|++|.|+-|. +..+-+ +..|.+|+.|+|..|.|..+-+ .+.++++||.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445555555555543 222355555666665554 333322 3455555555555555554422 244555555555
Q ss_pred ccCCCCCc
Q 047027 380 LGMCGRLK 387 (692)
Q Consensus 380 l~~c~~~~ 387 (692)
|..|....
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 55544333
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.36 E-value=0.014 Score=55.82 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=16.4
Q ss_pred cCCCCcEEEccCCC--Cc-cCCccccCCCCCcEEEccC
Q 047027 348 HMHGLKVLNLSRTN--IE-VLPSSVSDLTNLRSLLLGM 382 (692)
Q Consensus 348 ~l~~L~~L~l~~~~--~~-~lp~~i~~l~~L~~L~l~~ 382 (692)
.+++|+.|.++.|. +. .++..+..+++|++|++++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 44555555555552 22 3333333445555555555
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.30 E-value=0.71 Score=49.13 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=118.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhhhhhh--ccchHHHHHHHHHHHHHh-CCeEEEEecCccCcC------CcccccCCCCCC
Q 047027 2 WVTVSQPLDLFKLQTEIATALKQSLL--ENEDKVRRAGRLLGMLKA-KEKFVLILDDTWEAF------PLEEVGIPEPNE 72 (692)
Q Consensus 2 wv~vs~~~~~~~l~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~~ 72 (692)
+|......+...++.+|++++..... ...........+.+.+.+ ++..+||||+++... .+..+......
T Consensus 90 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~- 168 (394)
T PRK00411 90 YINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE- 168 (394)
T ss_pred EEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-
Confidence 34444555677888889888864211 112233444455555532 456899999998742 12333222211
Q ss_pred CCCe--EEEEEecchhhhcc--------ccccceeeccCChHhHHHHHHhhhcCC---CCCCchhHHHHHHHHHHHhCCc
Q 047027 73 ENGC--KLVITTRSHTVCRS--------MKCKQVVVELLSKQEAFNLFIDGVGNS---ILQVPALNKEIINEVVEECGRL 139 (692)
Q Consensus 73 ~~gs--~IivTTR~~~v~~~--------~~~~~~~l~~l~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~gl 139 (692)
.+++ .||.++.+..+... .+...+.+.+++.++..+++...+... ..-.+...+.++.......|..
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 1233 36666666543332 222223389999999999999876322 1111222333333333335667
Q ss_pred hhHHHHHHHHhc-----CC--cCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCC--CC
Q 047027 140 PLAIVTVAASMS-----GE--EEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPE--DF 210 (692)
Q Consensus 140 Plal~~~g~~L~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~--~~ 210 (692)
+.|+..+-.+.. +. -+.+..+.+.+... .....-.+..|+ .+.|..+..++...+ ..
T Consensus 249 r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~ 314 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGD 314 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCC
Confidence 777766643321 11 24455555554431 112334567887 454444433332221 12
Q ss_pred ccCHHHHHHH--HHHcCCcccchhhhhHHHhHHHHHHHHHhhcccccc
Q 047027 211 AIPKDELIDY--WIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 256 (692)
Q Consensus 211 ~i~~~~l~~~--w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 256 (692)
.+...++... .+++.+-.. ...+....+++..|.+.+++...
T Consensus 315 ~~~~~~i~~~y~~l~~~~~~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 315 EVTTGEVYEEYKELCEELGYE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cccHHHHHHHHHHHHHHcCCC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 3444554432 222221111 00123345578888888888753
No 69
>PRK06893 DNA replication initiation factor; Validated
Probab=95.16 E-value=0.015 Score=56.64 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=62.8
Q ss_pred eEEEEecCccCc---CCccc-ccCCCCC-CCCCeEEEEEecc----------hhhhcccccccee-eccCChHhHHHHHH
Q 047027 48 KFVLILDDTWEA---FPLEE-VGIPEPN-EENGCKLVITTRS----------HTVCRSMKCKQVV-VELLSKQEAFNLFI 111 (692)
Q Consensus 48 r~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~----------~~v~~~~~~~~~~-l~~l~~~~~~~Lf~ 111 (692)
.-+|||||+|.. .+|+. +...+.. ...|..|||||.+ ..+..+++....+ +++++.++.++++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 458999999873 34542 2221211 1245566555544 3566666666667 99999999999999
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 112 DGVGNSILQVPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
+.+...... --+++..-+++++.|..-++..+
T Consensus 172 ~~a~~~~l~---l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 172 RNAYQRGIE---LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHH
Confidence 988754333 23577888888888877665443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.14 E-value=0.011 Score=56.43 Aligned_cols=79 Identities=30% Similarity=0.351 Sum_probs=34.5
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCC--CccCCCchhHhhcCCCCcEEEccCCCCccC--CccccCCCCCcE
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRN--GLLQRIPECFFVHMHGLKVLNLSRTNIEVL--PSSVSDLTNLRS 377 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--p~~i~~l~~L~~ 377 (692)
.++.+++.+..+.++-. ++.+++|+.|.++.| +....++... ..+++|++|++++|.+..+ -.....+.+|..
T Consensus 44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34444444444433311 234555666666555 2222232222 3445666666666654421 011233444445
Q ss_pred EEccCC
Q 047027 378 LLLGMC 383 (692)
Q Consensus 378 L~l~~c 383 (692)
|++..|
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 555444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.0082 Score=33.96 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=12.8
Q ss_pred CCcEEEccCCCCccCCccccC
Q 047027 351 GLKVLNLSRTNIEVLPSSVSD 371 (692)
Q Consensus 351 ~L~~L~l~~~~~~~lp~~i~~ 371 (692)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 72
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.93 E-value=0.08 Score=51.55 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHh-CCeEEEEecCccCcC-Ccc----------cccCCCCCCCCCeEEEEEecchhhhcc--------cc
Q 047027 33 VRRAGRLLGMLKA-KEKFVLILDDTWEAF-PLE----------EVGIPEPNEENGCKLVITTRSHTVCRS--------MK 92 (692)
Q Consensus 33 ~~~~~~~~~~l~~-~kr~LlVlDdv~~~~-~~~----------~l~~~~~~~~~gs~IivTTR~~~v~~~--------~~ 92 (692)
......+.+.+.+ +++++||+|++.... ... .+........+.+.| +++....+... .+
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v-~~~S~~~~~~~~~~~~~~~~~ 181 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV-ITGSSDSLMEEFLDDKSPLFG 181 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE-EEESSHHHHHHTT-TTSTTTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE-EECCchHHHHHhhcccCcccc
Confidence 3445555566543 356999999998765 211 111221222344444 44444433322 12
Q ss_pred cccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 93 CKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 93 ~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
..... +++++.+++++++...+... ... +..+...++|.+.+||.|..|..
T Consensus 182 ~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 182 RFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp ---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 22234 99999999999999876443 211 12466779999999999987754
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.01 Score=33.59 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=13.9
Q ss_pred cCCEEecccCCCcccCccccC
Q 047027 397 ALQYLDLEATGIEEVPEGMEM 417 (692)
Q Consensus 397 ~L~~L~l~~~~l~~lp~~i~~ 417 (692)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766544
No 74
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.42 E-value=4.1 Score=42.79 Aligned_cols=237 Identities=12% Similarity=0.084 Sum_probs=118.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhhh---hhh-ccchHHHHHHHHHHHHH-hCCeEEEEecCccCcC-C----cccccCC--C
Q 047027 2 WVTVSQPLDLFKLQTEIATALKQ---SLL-ENEDKVRRAGRLLGMLK-AKEKFVLILDDTWEAF-P----LEEVGIP--E 69 (692)
Q Consensus 2 wv~vs~~~~~~~l~~~i~~~l~~---~~~-~~~~~~~~~~~~~~~l~-~~kr~LlVlDdv~~~~-~----~~~l~~~--~ 69 (692)
||......+...++.+|++++.. ... ...+.......+.+.+. .+++++||||+++... . +..+... .
T Consensus 79 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 79 YVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 45555555677888889888842 111 11122333444555543 3467899999998761 1 2222211 0
Q ss_pred CC-CCCCeEEEEEecchhhhc--------cccccceeeccCChHhHHHHHHhhhcCC--CCCCchhHHHHHHHHHHHhCC
Q 047027 70 PN-EENGCKLVITTRSHTVCR--------SMKCKQVVVELLSKQEAFNLFIDGVGNS--ILQVPALNKEIINEVVEECGR 138 (692)
Q Consensus 70 ~~-~~~gs~IivTTR~~~v~~--------~~~~~~~~l~~l~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g 138 (692)
.. .+..-.+|.+|.+..... .+....+++++.+.+|...++..++... .....++..+.+.+++....|
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 11 112234555555443211 1121223389999999999999886421 112223334455667777778
Q ss_pred chhHH-HHHHHHh----c-C--CcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCC--C
Q 047027 139 LPLAI-VTVAASM----S-G--EEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYP--E 208 (692)
Q Consensus 139 lPlal-~~~g~~L----~-~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp--~ 208 (692)
.+..+ ..+-.+. . + .-+.+..+.+.+.+. .....-....|+ .+.+..+..++..- .
T Consensus 239 d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~ 304 (365)
T TIGR02928 239 DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLP-THSKLVLLAIANLAAND 304 (365)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcC
Confidence 87544 3222211 1 1 123444444444331 112234556777 55555444443211 3
Q ss_pred CCccCHHHHHHHHH--HcCCcccchhhhhHHHhHHHHHHHHHhhcccccc
Q 047027 209 DFAIPKDELIDYWI--AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 256 (692)
Q Consensus 209 ~~~i~~~~l~~~w~--a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 256 (692)
+..+...++...+- ++.+ . .....+....+++..|...+++...
T Consensus 305 ~~~~~~~~~~~~y~~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 305 EDPFRTGEVYEVYKEVCEDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred CCCccHHHHHHHHHHHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 33455555555331 1111 1 0112235566778888888888764
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.0025 Score=60.94 Aligned_cols=98 Identities=27% Similarity=0.273 Sum_probs=68.7
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC---cccccccCC
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP---SVAKLLALQ 399 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp---~~~~l~~L~ 399 (692)
.+.+.+.|++.||. +..+ ++..+|+.|.+|.|+-|.|+++. .+..|.+|+.|.|+. +.+..+. -+.++++|+
T Consensus 17 dl~~vkKLNcwg~~-L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCC-ccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence 45677888999987 5655 34678999999999999998874 477888888888887 4555555 266777788
Q ss_pred EEecccCCCc-ccCc-----cccCCCCCCEEE
Q 047027 400 YLDLEATGIE-EVPE-----GMEMLENLSHLY 425 (692)
Q Consensus 400 ~L~l~~~~l~-~lp~-----~i~~l~~L~~L~ 425 (692)
+|-|..|... +-+. -+..|++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8777665222 2221 135567777766
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.22 E-value=0.012 Score=64.67 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCCccEEEccCCCccCCCc-hhHhhcCCCCcEEEccCC-C-Ccc----CCccccCCCCCcEEEccCCCCCcCCC--ccc
Q 047027 323 HCEILSTLLLQRNGLLQRIP-ECFFVHMHGLKVLNLSRT-N-IEV----LPSSVSDLTNLRSLLLGMCGRLKRVP--SVA 393 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~-~~~----lp~~i~~l~~L~~L~l~~c~~~~~lp--~~~ 393 (692)
.+++|+.+.+.++..+.... ..+...+++|+.|+++++ . +.. .+.....+.+|+.|++++|..+...- .+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 35667777777775554422 233456777888887763 1 111 11223445677777777766544433 222
Q ss_pred -ccccCCEEecccCC-Cc--ccCccccCCCCCCEEEccCC
Q 047027 394 -KLLALQYLDLEATG-IE--EVPEGMEMLENLSHLYLYLP 429 (692)
Q Consensus 394 -~l~~L~~L~l~~~~-l~--~lp~~i~~l~~L~~L~l~~~ 429 (692)
.+++|++|.+.+|. ++ .+-....++++|++|+++.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 25677777766663 43 22222345566777777544
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.07 E-value=0.13 Score=44.66 Aligned_cols=102 Identities=20% Similarity=0.356 Sum_probs=35.7
Q ss_pred CCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEccCCCCCcCCC--cccc
Q 047027 318 SNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--SVAK 394 (692)
Q Consensus 318 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~ 394 (692)
...+..+.+|+.+.+... +..++...|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++ .+..
T Consensus 5 ~~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred HHHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccc
Confidence 334444445555554421 34444444455545555555442 333322 233444455555532 223333 2444
Q ss_pred cccCCEEecccCCCcccCcc-ccCCCCCCEEEc
Q 047027 395 LLALQYLDLEATGIEEVPEG-MEMLENLSHLYL 426 (692)
Q Consensus 395 l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 426 (692)
+.+|+.+++..+ +..++.. +.+. +|+.+.+
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 555555555432 3333322 2333 4555544
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.79 E-value=0.053 Score=51.96 Aligned_cols=44 Identities=30% Similarity=0.276 Sum_probs=30.7
Q ss_pred ccccccCCEEecccCCCc-ccCc----cccCCCCCCEEEccCCCCCCCC
Q 047027 392 VAKLLALQYLDLEATGIE-EVPE----GMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 392 ~~~l~~L~~L~l~~~~l~-~lp~----~i~~l~~L~~L~l~~~~~~~lp 435 (692)
+-++++|++.+++.|.+. +.|+ -|.+-+.|.||.+.+|.++.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 456677788888877554 4443 3566788888888888887554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.0081 Score=54.98 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=44.9
Q ss_pred cCCcccccccCceeEEEEeccCCccccchhchHH-hhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCc
Q 047027 555 QGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLP-ALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRL 633 (692)
Q Consensus 555 ~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~-~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 633 (692)
+++..+..++ .++.|.+.+|..+.+. .+..+. -.++|+.|+|++|+++++--. ..+..|++|
T Consensus 116 eGle~L~~l~-~i~~l~l~~ck~~dD~-~L~~l~~~~~~L~~L~lsgC~rIT~~GL---------------~~L~~lknL 178 (221)
T KOG3864|consen 116 EGLEHLRDLR-SIKSLSLANCKYFDDW-CLERLGGLAPSLQDLDLSGCPRITDGGL---------------ACLLKLKNL 178 (221)
T ss_pred HHHHHHhccc-hhhhheeccccchhhH-HHHHhcccccchheeeccCCCeechhHH---------------HHHHHhhhh
Confidence 3444455666 7777777777777664 222222 346777788887777765310 133457777
Q ss_pred ceeecCCCCCcc
Q 047027 634 KKLRFSKLPEFK 645 (692)
Q Consensus 634 ~~L~l~~~~~L~ 645 (692)
+.|.|.+++...
T Consensus 179 r~L~l~~l~~v~ 190 (221)
T KOG3864|consen 179 RRLHLYDLPYVA 190 (221)
T ss_pred HHHHhcCchhhh
Confidence 777777766543
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.64 E-value=0.19 Score=43.72 Aligned_cols=115 Identities=20% Similarity=0.360 Sum_probs=64.1
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRS 377 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 377 (692)
.+.+++.+.+.. .+..++...+..+.+++.+.+..+ +..++...|.+++.|+.+.+.. .+..++. .+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 345778888764 677888888888889999999875 7888888888998899999976 5555543 4566899999
Q ss_pred EEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCC
Q 047027 378 LLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENL 421 (692)
Q Consensus 378 L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L 421 (692)
+.+.. .+..++ .+.+. +|+.+.+.. .+..++.. +.+.++|
T Consensus 86 i~~~~--~~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPS--NITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETT--T-BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCc--cccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99865 355666 47776 888888765 44555543 3333343
No 81
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.32 E-value=0.47 Score=49.01 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=87.2
Q ss_pred CeEEEEEecchhhhcccc--cccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhc
Q 047027 75 GCKLVITTRSHTVCRSMK--CKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMS 151 (692)
Q Consensus 75 gs~IivTTR~~~v~~~~~--~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~ 151 (692)
.+-|..|||...+..... ..... +++++.++..+++.+.+...... -.++.+..|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 455667777554433221 12334 89999999999999887655333 2346789999999999975554443321
Q ss_pred CCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHh-HhcCCCCCCccCHHHHHHHHHHcCCcccc
Q 047027 152 GEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFL-YCALYPEDFAIPKDELIDYWIAEGFIEEV 230 (692)
Q Consensus 152 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-~la~fp~~~~i~~~~l~~~w~a~~~~~~~ 230 (692)
.|.... ....-.........+.+...+..|+ +..+..+. ....|..+ .+..+.+-... -.
T Consensus 228 ------~~a~~~----~~~~I~~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~-- 288 (328)
T PRK00080 228 ------DFAQVK----GDGVITKEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GE-- 288 (328)
T ss_pred ------HHHHHc----CCCCCCHHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CC--
Confidence 111110 0000000111233344567777887 56666664 55556554 34444432211 11
Q ss_pred hhhhhHHHhHHHHHH-HHHhhccccccCCC
Q 047027 231 KDVQAKYDRGHTILN-RLVNCCLLESAEDG 259 (692)
Q Consensus 231 ~~~~~~~~~~~~~l~-~L~~~~ll~~~~~~ 259 (692)
..+..++.++ .|++.+|++....+
T Consensus 289 -----~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 289 -----ERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred -----CcchHHHHhhHHHHHcCCcccCCch
Confidence 1233444456 89999999765433
No 82
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.88 E-value=0.078 Score=27.76 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=9.3
Q ss_pred CCcceEEEcCCCCccccC
Q 047027 657 NSLQEIKVYGCPKLKRLS 674 (692)
Q Consensus 657 ~~L~~L~i~~C~~L~~lP 674 (692)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777776 66665
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.66 E-value=0.2 Score=48.18 Aligned_cols=19 Identities=11% Similarity=-0.146 Sum_probs=10.8
Q ss_pred CCCCCEEEccCCCCCCCCh
Q 047027 418 LENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 418 l~~L~~L~l~~~~~~~lp~ 436 (692)
-+.|+......|++...|.
T Consensus 156 kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 156 KPKLEVVICGRNRLENGSK 174 (388)
T ss_pred CCCceEEEeccchhccCcH
Confidence 3456666666666655554
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.42 E-value=0.08 Score=27.71 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=5.8
Q ss_pred cCCEEecccCCCcccC
Q 047027 397 ALQYLDLEATGIEEVP 412 (692)
Q Consensus 397 ~L~~L~l~~~~l~~lp 412 (692)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3445555555444443
No 85
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.07 E-value=5.2 Score=40.76 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=85.0
Q ss_pred CeEEEEEecchhhhccc--ccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhc
Q 047027 75 GCKLVITTRSHTVCRSM--KCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMS 151 (692)
Q Consensus 75 gs~IivTTR~~~v~~~~--~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~ 151 (692)
..-|.+|||...+.... .....+ +++++.+|..+++.+.+...... -.++.+..|++.|+|.|-.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~ 206 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVR 206 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 55666777765443321 112344 89999999999999887644322 2345678899999999977655554321
Q ss_pred CCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHh-HhcCCCCCCccCHHHHHHHHHHcCCcccc
Q 047027 152 GEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFL-YCALYPEDFAIPKDELIDYWIAEGFIEEV 230 (692)
Q Consensus 152 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-~la~fp~~~~i~~~~l~~~w~a~~~~~~~ 230 (692)
... ........ ...........+..+|..++ ++.+..+. .++.+..+ .+.... +|.-+ ..
T Consensus 207 --------~~a-~~~~~~~i-t~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~-----ia~~l-g~- 267 (305)
T TIGR00635 207 --------DFA-QVRGQKII-NRDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKT-----LAAAL-GE- 267 (305)
T ss_pred --------HHH-HHcCCCCc-CHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHH-----HHHHh-CC-
Confidence 110 00000000 00001112222566788888 66666555 44555433 333322 22211 11
Q ss_pred hhhhhHHHhHHHHHH-HHHhhccccccCCC
Q 047027 231 KDVQAKYDRGHTILN-RLVNCCLLESAEDG 259 (692)
Q Consensus 231 ~~~~~~~~~~~~~l~-~L~~~~ll~~~~~~ 259 (692)
.....+..++ .|++++++.....+
T Consensus 268 -----~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 268 -----DADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred -----CcchHHHhhhHHHHHcCCcccCCch
Confidence 1234455567 69999999765444
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.061 Score=49.39 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=61.1
Q ss_pred ceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcc
Q 047027 566 DLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFK 645 (692)
Q Consensus 566 ~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 645 (692)
.++.++-++|.-.. . -+..+..+++++.|.+.+|..+...-... -.+.+|+|+.|+|++|+.++
T Consensus 102 ~IeaVDAsds~I~~-e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~--------------l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMY-E-GLEHLRDLRSIKSLSLANCKYFDDWCLER--------------LGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHH-H-HHHHHhccchhhhheeccccchhhHHHHH--------------hcccccchheeeccCCCeec
Confidence 36666666643211 1 44567777888888999998776654221 12268999999999999887
Q ss_pred eeccCCceeecCCcceEEEcCCCCccc
Q 047027 646 SVCSNNGVLVCNSLQEIKVYGCPKLKR 672 (692)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~i~~C~~L~~ 672 (692)
+--. .....+++|+.|.|++.|....
T Consensus 166 ~~GL-~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 166 DGGL-ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHH-HHHHHhhhhHHHHhcCchhhhc
Confidence 7633 1345688899998888776553
No 87
>COG3903 Predicted ATPase [General function prediction only]
Probab=90.41 E-value=0.26 Score=50.66 Aligned_cols=225 Identities=18% Similarity=0.128 Sum_probs=134.4
Q ss_pred HHHHHHhCCeEEEEecCccCc-CCcccccCCCCCCCCCeEEEEEecchhhhcccccccee-eccCCh-HhHHHHHHhhhc
Q 047027 39 LLGMLKAKEKFVLILDDTWEA-FPLEEVGIPEPNEENGCKLVITTRSHTVCRSMKCKQVV-VELLSK-QEAFNLFIDGVG 115 (692)
Q Consensus 39 ~~~~l~~~kr~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~-l~~l~~-~~~~~Lf~~~~~ 115 (692)
+.... .++|.++|+||..+. ++-..+...+..+...=.|+.|+|+..... + +..+ +..++. +++..+|...+.
T Consensus 81 ~~~~~-~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--g-e~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 81 LVRRI-GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--G-EVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred HHHHH-hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--c-cccccCCccccCCchhHHHHHHHH
Confidence 33444 568999999998764 222222222223334457888888876543 2 2333 666664 489999987764
Q ss_pred CC--CCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcCHHH---HHHHHHHHhhccccCCCchhhhhhhhhhcccc
Q 047027 116 NS--ILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEIHE---WRNALNELRGLVRSRNGVNADVLGRLEFSYHR 190 (692)
Q Consensus 116 ~~--~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~---w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~ 190 (692)
.. ...........+..|.++.+|.|++|...++..+.-...+. ...-...+.................+.+||--
T Consensus 157 ~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 157 LVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred HhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 33 22222345678889999999999999999988876422221 11111122221111112345678889999999
Q ss_pred CCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHHHhhccccccCCC--CEEEehHHH
Q 047027 191 LKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDG--SCVKMHDLI 268 (692)
Q Consensus 191 L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~--~~~~mhdl~ 268 (692)
|. ...+--|-.++.|...+.-+ -..|.+.|-... .....+-.-+..++++++....... ..++.-+..
T Consensus 237 Lt-gwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~ 306 (414)
T COG3903 237 LT-GWERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETG 306 (414)
T ss_pred hh-hHHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHH
Confidence 99 78899999999998887544 233444443221 1123344456778888887654322 345555666
Q ss_pred HHHHHHHhc
Q 047027 269 RDMALRITS 277 (692)
Q Consensus 269 ~~~~~~~~~ 277 (692)
+.|+.....
T Consensus 307 r~YalaeL~ 315 (414)
T COG3903 307 RRYALAELH 315 (414)
T ss_pred HHHHHHHHH
Confidence 666665443
No 88
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.65 E-value=0.077 Score=58.17 Aligned_cols=139 Identities=18% Similarity=0.229 Sum_probs=72.1
Q ss_pred cccceEEeecccccCC---CCccccccccccceeccc-cchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccch
Q 047027 508 YKHKSVCLFACKICER---EEPIVLPEDVQFLQMNRV-HDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFS 583 (692)
Q Consensus 508 ~~l~~l~L~~~~~~~~---~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~ 583 (692)
..++.+.+..|..... .......+.|+.|.+.++ ...+... ..........+ +|++|++++|..+++. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~-~L~~l~l~~~~~isd~-~ 260 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP-----LLLLLLLSICR-KLKSLDLSGCGLVTDI-G 260 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch-----hHhhhhhhhcC-CcCccchhhhhccCch-h
Confidence 3455555555543332 122456678888888773 2211100 00011123344 8888888888766654 2
Q ss_pred hchHH-hhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceE
Q 047027 584 LRLLP-ALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEI 662 (692)
Q Consensus 584 ~~~l~-~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L 662 (692)
+..+. .+++|+.|.+.+|..++.--.. .....+|+|+.|.++.|..+.+-........+++|+.|
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~--------------~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l 326 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLV--------------SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL 326 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHH--------------HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence 22222 3678888888888764332110 12235778888888888876332111122235555554
Q ss_pred EEcCC
Q 047027 663 KVYGC 667 (692)
Q Consensus 663 ~i~~C 667 (692)
.+.++
T Consensus 327 ~~~~~ 331 (482)
T KOG1947|consen 327 KLLSL 331 (482)
T ss_pred hhhhc
Confidence 44433
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.20 E-value=0.36 Score=28.44 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=12.0
Q ss_pred ccCCEEecccCCCcccCccc
Q 047027 396 LALQYLDLEATGIEEVPEGM 415 (692)
Q Consensus 396 ~~L~~L~l~~~~l~~lp~~i 415 (692)
++|++|++.+|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666543
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.20 E-value=0.36 Score=28.44 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=12.0
Q ss_pred ccCCEEecccCCCcccCccc
Q 047027 396 LALQYLDLEATGIEEVPEGM 415 (692)
Q Consensus 396 ~~L~~L~l~~~~l~~lp~~i 415 (692)
++|++|++.+|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666543
No 91
>PRK09087 hypothetical protein; Validated
Probab=88.10 E-value=1.2 Score=43.04 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=59.2
Q ss_pred EEEEecCccCcCC-cccccCCCCC-CCCCeEEEEEecc---------hhhhcccccccee-eccCChHhHHHHHHhhhcC
Q 047027 49 FVLILDDTWEAFP-LEEVGIPEPN-EENGCKLVITTRS---------HTVCRSMKCKQVV-VELLSKQEAFNLFIDGVGN 116 (692)
Q Consensus 49 ~LlVlDdv~~~~~-~~~l~~~~~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~-l~~l~~~~~~~Lf~~~~~~ 116 (692)
-+|++||+..... -+++..-+.. ...|..||+|++. .++..++.+...+ +++++.++-.+++.+.+..
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 3788899965311 1112211110 1246678888873 3444445555666 9999999999999988754
Q ss_pred CCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 117 SILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
.... --+++..-|++++.|..-++..
T Consensus 169 ~~~~---l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 169 RQLY---VDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred cCCC---CCHHHHHHHHHHhhhhHHHHHH
Confidence 4222 2357788888888887766653
No 92
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.26 E-value=1.6 Score=37.90 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=54.9
Q ss_pred CEEEecCCCCHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHhCCeEEEEecCccCc-C--CcccccCCCCCCCCCeE
Q 047027 1 IWVTVSQPLDLFKLQTEIATALKQSLLENEDKVRRAGRLLGMLKAKEKFVLILDDTWEA-F--PLEEVGIPEPNEENGCK 77 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~gs~ 77 (692)
+||.++...+...+.++|+.+++...............+.+.+.+.+..+||+|+++.. . .++.+..... ..+-+
T Consensus 41 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~ 118 (131)
T PF13401_consen 41 IYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIK 118 (131)
T ss_dssp EEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCe
Confidence 36777777789999999999998765553445556677777776666679999999875 2 2333332222 46667
Q ss_pred EEEEecc
Q 047027 78 LVITTRS 84 (692)
Q Consensus 78 IivTTR~ 84 (692)
||++.+.
T Consensus 119 vvl~G~~ 125 (131)
T PF13401_consen 119 VVLVGTP 125 (131)
T ss_dssp EEEEESS
T ss_pred EEEEECh
Confidence 7777665
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.10 E-value=0.82 Score=26.84 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=13.5
Q ss_pred CCCcEEEccCCCCccCCccc
Q 047027 350 HGLKVLNLSRTNIEVLPSSV 369 (692)
Q Consensus 350 ~~L~~L~l~~~~~~~lp~~i 369 (692)
.+|++|+|++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45677777777777776543
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.10 E-value=0.82 Score=26.84 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=13.5
Q ss_pred CCCcEEEccCCCCccCCccc
Q 047027 350 HGLKVLNLSRTNIEVLPSSV 369 (692)
Q Consensus 350 ~~L~~L~l~~~~~~~lp~~i 369 (692)
.+|++|+|++|.++.+|..+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45677777777777776543
No 95
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.82 E-value=0.046 Score=51.16 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=41.7
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
..++.|+++.|....+...+. .+..+..|+++.|. +..+|..+ +....++.+++..|+.+..|.+.+.+++++++++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s-~~t~~~rl~~sknq-~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFS-ILTRLVRLDLSKNQ-IKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHHhhccchH-HHHHHHHHhccHhh-HhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344555555555444433322 34445555555553 45555544 5555555555555555555555555555555555
Q ss_pred cCC
Q 047027 381 GMC 383 (692)
Q Consensus 381 ~~c 383 (692)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 543
No 96
>PF13173 AAA_14: AAA domain
Probab=82.53 E-value=1 Score=39.18 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=42.5
Q ss_pred CCeEEEEecCccCcCCcccccCCCCCCCCCeEEEEEecchhhhcc-----c-ccccee-eccCChHhH
Q 047027 46 KEKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVITTRSHTVCRS-----M-KCKQVV-VELLSKQEA 106 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~-----~-~~~~~~-l~~l~~~~~ 106 (692)
.+..+|+||++....+|......+-+.++..+|++|+........ . |-...+ |.|++..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 367899999999988887655555444456799999998766532 1 222233 888887764
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.47 E-value=1.3 Score=42.84 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=57.0
Q ss_pred eEEEEecCccCcC---Ccc-cccCCCCC-CCCCeEEEEEecchh---------hhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAF---PLE-EVGIPEPN-EENGCKLVITTRSHT---------VCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+|||||++... .|. .+...+.. ...+.+||+||+... +...+.....+ +.+++.++...++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 3489999998753 222 23222111 113347888887532 11122212344 999999999999887
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
.+...... --++..+.+++.++|.|..+..+-
T Consensus 171 ~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 171 RAARRGLQ---LPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHH
Confidence 65332222 224566778888899888776554
No 98
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.65 E-value=0.077 Score=49.72 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=60.5
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEE
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYL 401 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L 401 (692)
.+...++|+++.|. +..+...+ ..+..|..|+++.+.+..+|..++.+..++.+++.. +.....| +++.+++++++
T Consensus 40 ~~kr~tvld~~s~r-~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR-LVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhH-HHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 56677788888776 44444333 556667778888888888888888777777777765 5677778 78888888888
Q ss_pred ecccCCCc
Q 047027 402 DLEATGIE 409 (692)
Q Consensus 402 ~l~~~~l~ 409 (692)
+..++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88777543
No 99
>COG3899 Predicted ATPase [General function prediction only]
Probab=78.66 E-value=19 Score=42.38 Aligned_cols=159 Identities=16% Similarity=0.216 Sum_probs=101.8
Q ss_pred cee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCC------cCHHHHHHHHHHHh
Q 047027 95 QVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGE------EEIHEWRNALNELR 167 (692)
Q Consensus 95 ~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~------~~~~~w~~~~~~l~ 167 (692)
..+ +.||+..+...+-......... ...+....|+++.+|.|+-+.-+-..+... .+...|..-...+.
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~~----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~ 287 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTKL----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG 287 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCccc----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC
Confidence 445 9999999999998877766311 235678999999999999998888887663 34455554333332
Q ss_pred hccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHH
Q 047027 168 GLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRL 247 (692)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L 247 (692)
.. ...+++...+..-.+.|| ...|...-..|++...+ +.+.|-..+-. .....+...++.|
T Consensus 288 ~~-----~~~~~vv~~l~~rl~kL~-~~t~~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al 348 (849)
T COG3899 288 IL-----ATTDAVVEFLAARLQKLP-GTTREVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDAL 348 (849)
T ss_pred Cc-----hhhHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHh
Confidence 22 223446667888999999 88999999999998665 55555554421 1234455556666
Q ss_pred Hhhcccccc-----CCC-CEE---EehHHHHHHHHHHh
Q 047027 248 VNCCLLESA-----EDG-SCV---KMHDLIRDMALRIT 276 (692)
Q Consensus 248 ~~~~ll~~~-----~~~-~~~---~mhdl~~~~~~~~~ 276 (692)
....++-.. ... ..- -.||.+++.+-...
T Consensus 349 ~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 349 QEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 665555422 111 111 35777777665433
No 100
>PRK13342 recombination factor protein RarA; Reviewed
Probab=77.58 E-value=8.1 Score=41.33 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=59.3
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEE--ecchh--hhccc-ccccee-eccCChHhHHHHHHhhhcC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVIT--TRSHT--VCRSM-KCKQVV-VELLSKQEAFNLFIDGVGN 116 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivT--TR~~~--v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~ 116 (692)
.+++.+|+||+++.. .+.+.+...+. .|..++|. |.+.. +.... .-...+ +.+++.++.+.++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 457889999999875 34445544443 35555553 33322 11111 111344 9999999999999886533
Q ss_pred CCCCCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 117 SILQVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
.......-.++....+++.|+|.+..+..+-
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1100001235667889999999987765443
No 101
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=76.64 E-value=5.9 Score=40.55 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=58.6
Q ss_pred CeEEEEecCccC--cCCcccccCCCCCCCCCeEEEEEecchhhh-ccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWE--AFPLEEVGIPEPNEENGCKLVITTRSHTVC-RSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
++=++|+|+++. .+.++++...+..-..++.+|++|.+.+.. +.... ...+ +.+++.++....+.+...+
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~----- 167 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND----- 167 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC-----
Confidence 444666676644 456777777776656788999888765432 22211 2344 8899999988777655421
Q ss_pred chhHHHHHHHHHHHhCCchhHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~ 144 (692)
..++.+.+++.+++|.|..+.
T Consensus 168 --~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 --IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 113447788999999886554
No 102
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=76.63 E-value=4.7 Score=42.08 Aligned_cols=95 Identities=7% Similarity=0.062 Sum_probs=59.0
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchh-hhcccc--ccceeeccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHT-VCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|+++... ....+...+..-..+..+|++|.+.+ +..... +..+.+.+++.++..+++.......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 456789999997753 34444443333234666777776653 333222 2223399999999999998764321
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
. +.....+++.++|.|.....+.
T Consensus 217 ---~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 ---P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ---C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1222678999999998665443
No 103
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=76.09 E-value=5.4 Score=37.24 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=56.7
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecch-hhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSH-TVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+.+-++|+||+... ++++.+...+....+.+.+|++|++. .+.+.... ...+ +.+++.++..+.+.+. + ..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC
Confidence 45668999999764 33555555554444566777777653 33222211 2344 9999999998888776 1 11
Q ss_pred CchhHHHHHHHHHHHhCCchh
Q 047027 121 VPALNKEIINEVVEECGRLPL 141 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPl 141 (692)
++.+..+++.++|.|.
T Consensus 171 -----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 171 -----EEAAELLLALAGGSPG 186 (188)
T ss_pred -----HHHHHHHHHHcCCCcc
Confidence 4568899999999885
No 104
>PRK08727 hypothetical protein; Validated
Probab=74.86 E-value=4.7 Score=39.26 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=56.4
Q ss_pred eEEEEecCccCcC---Cccc-ccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAF---PLEE-VGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~---~~~~-l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+|||||+.... +|.. +...+.. ..+|..||+||+.. ++..++.....+ +++++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 4599999997542 2322 2111111 12456799999852 333333334455 999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
.+...... -.++....++++++|-.-++
T Consensus 174 ~a~~~~l~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLA---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCC---CCHHHHHHHHHhCCCCHHHH
Confidence 76543222 23567778888887665544
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=74.75 E-value=7.9 Score=42.29 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=62.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEE-EEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLV-ITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|+++.. .+++.+...+......+++| +||+...+...... ...+ +.+++.++....+.+.+......
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ 206 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK 206 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46678999999874 44666665555444565655 45555555443322 2344 99999999999998887554322
Q ss_pred CchhHHHHHHHHHHHhCCchhHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
-..+....|++.++|.+..+.
T Consensus 207 ---ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 207 ---TDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 124556778889998775543
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=74.65 E-value=10 Score=39.44 Aligned_cols=97 Identities=9% Similarity=0.039 Sum_probs=58.5
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeE-EEEEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCK-LVITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~-IivTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|+++... ..+.+...+..-..+.. |++|++-..+...... ...+ +.+++.++....+.+......
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--
Confidence 466789999998753 23444433332223444 4555444444433321 1344 999999999999987432211
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
..++.+..+++.++|.|.....+.
T Consensus 218 ---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 ---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 114457789999999998765443
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=73.61 E-value=3.7 Score=40.01 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEEecCccCc---CCccc-ccCCCCC-CCCCeEEEEEecchh---------hhcccccccee-eccCChHhHHHHHHhhh
Q 047027 50 VLILDDTWEA---FPLEE-VGIPEPN-EENGCKLVITTRSHT---------VCRSMKCKQVV-VELLSKQEAFNLFIDGV 114 (692)
Q Consensus 50 LlVlDdv~~~---~~~~~-l~~~~~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~-l~~l~~~~~~~Lf~~~~ 114 (692)
+||+||+... .+|+. +..-+.. ...|.+||+||+... +..++++...+ +++++.++-.+++.+++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999743 34533 2222211 124667888887532 12222333455 89999999999988665
Q ss_pred cCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 115 GNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
...... --+++..-+++++.|..-++..
T Consensus 180 ~~~~~~---l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 180 SRRGLH---LTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHcCCC---CCHHHHHHHHHhcCCCHHHHHH
Confidence 433222 1246777778877776655543
No 108
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.58 E-value=2 Score=25.27 Aligned_cols=17 Identities=29% Similarity=0.890 Sum_probs=13.2
Q ss_pred cCCcceEEEcCCCCccc
Q 047027 656 CNSLQEIKVYGCPKLKR 672 (692)
Q Consensus 656 ~~~L~~L~i~~C~~L~~ 672 (692)
+|+|++|++++|+++..
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46788888888887764
No 109
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=73.35 E-value=31 Score=35.61 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=63.4
Q ss_pred CEEEecCCCCHHHHHHHHHHHhhhhhhccchH---HHHHHHHHHHHH-------hCCeEEEEecCccCcCCccccc----
Q 047027 1 IWVTVSQPLDLFKLQTEIATALKQSLLENEDK---VRRAGRLLGMLK-------AKEKFVLILDDTWEAFPLEEVG---- 66 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~---~~~~~~~~~~l~-------~~kr~LlVlDdv~~~~~~~~l~---- 66 (692)
+||++-..|+.+.++..|+.+.+....+.... .......+..+. +++.++|||||++...+.++..
T Consensus 59 vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l 138 (438)
T KOG2543|consen 59 VWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCL 138 (438)
T ss_pred eeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHH
Confidence 59999999999999999999985221111000 111122222221 2468999999998876655421
Q ss_pred ----CCCCCCCCCeEEEEEecch---hhhcccccccee---eccCChHhHHHHHHhhhc
Q 047027 67 ----IPEPNEENGCKLVITTRSH---TVCRSMKCKQVV---VELLSKQEAFNLFIDGVG 115 (692)
Q Consensus 67 ----~~~~~~~~gs~IivTTR~~---~v~~~~~~~~~~---l~~l~~~~~~~Lf~~~~~ 115 (692)
...+ .+ ..+|+++.-. .-...+|...+. ...-+.+|-.+++.+.-.
T Consensus 139 ~~L~el~~--~~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 139 FRLYELLN--EP-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred HHHHHHhC--CC-ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 1122 12 3444444332 222223443322 777888999888865543
No 110
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=72.65 E-value=2.9 Score=40.21 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=51.5
Q ss_pred eEEEEecCccCcCC---ccc-ccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAFP---LEE-VGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~~---~~~-l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
-=+|+|||++.... |+. +..-+.. ...|-+||+|++.. .+..++.....+ +++++.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 44889999976422 322 1111110 12466899999653 223333444566 999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
.+...... --++++.-+++++.+..-.+.
T Consensus 178 ~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 178 KAKERGIE---LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHhCCC---CcHHHHHHHHHhhcCCHHHHH
Confidence 88654333 235666777777666555444
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=72.12 E-value=4.4 Score=39.49 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=57.2
Q ss_pred EEEEecCccCc---CCccc-ccCCCCC-CCCC-eEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHh
Q 047027 49 FVLILDDTWEA---FPLEE-VGIPEPN-EENG-CKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 49 ~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
-+|+|||+... .+|+. +...+.. ...| .++|+||+.. ++..++.+...+ ++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 38899999763 33432 1111111 0123 3688888753 334444555666 999999999999877
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
++...... --+++..-+++++.|..-++..
T Consensus 179 ~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 179 RARLRGFE---LPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHcCCC---CCHHHHHHHHHhhcCCHHHHHH
Confidence 66433222 2357788888888876655543
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=69.89 E-value=20 Score=40.45 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEE--Eecchhhhc-cc--cccceeeccCChHhHHHH
Q 047027 37 GRLLGMLKAKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVI--TTRSHTVCR-SM--KCKQVVVELLSKQEAFNL 109 (692)
Q Consensus 37 ~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv--TTR~~~v~~-~~--~~~~~~l~~l~~~~~~~L 109 (692)
..+.+.+ +++++.++-|+.|.. ..|+.++..+....+...|+| ||++..... .. .....++.+++.+|.+.+
T Consensus 283 ~~Ll~~L-e~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 283 NKLLKVL-EDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHH-hhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 3444444 667888887766654 347777665655555655666 666543221 11 112223889999999999
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHH
Q 047027 110 FIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAAS 149 (692)
Q Consensus 110 f~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~ 149 (692)
+.+.+....... .++....|.+++..-+.|+..++..
T Consensus 362 l~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 362 VLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 998765432211 1345555556555445666555543
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=68.59 E-value=16 Score=39.57 Aligned_cols=99 Identities=17% Similarity=0.112 Sum_probs=61.3
Q ss_pred eEEEEecCccCcC---Cc-ccccCCCCC-CCCCeEEEEEecc---------hhhhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAF---PL-EEVGIPEPN-EENGCKLVITTRS---------HTVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~---------~~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+|||||+.... .+ +.+..-+.. ...|..||+|+.. +.+..++.+.... +++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4589999996532 22 222211110 1244468888653 2333344445555 999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
++...... ..-.++...-|++.++|.|..+.-+.
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 87543210 01336788999999999998875544
No 114
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=68.44 E-value=13 Score=42.24 Aligned_cols=93 Identities=5% Similarity=0.008 Sum_probs=60.6
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchhh-hccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHTV-CRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~v-~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
++.-++|||++.... .++.+..-+..-....++|+||++.+- ...... ...+ ++.++.++..+.+.+........
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 345588999998763 366665544443457787877777443 222211 1344 99999999999998876544322
Q ss_pred CchhHHHHHHHHHHHhCCchh
Q 047027 121 VPALNKEIINEVVEECGRLPL 141 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPl 141 (692)
..++..+.|++.++|...
T Consensus 198 ---id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 198 ---FEPQALRLLARAAQGSMR 215 (830)
T ss_pred ---CCHHHHHHHHHHcCCCHH
Confidence 235677888999988554
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=67.80 E-value=4.4 Score=40.20 Aligned_cols=87 Identities=6% Similarity=0.097 Sum_probs=62.0
Q ss_pred EEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchhhhccc---cccceeeccCChHhHHHHHHhhhcCCCCCCchh
Q 047027 50 VLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHTVCRSM---KCKQVVVELLSKQEAFNLFIDGVGNSILQVPAL 124 (692)
Q Consensus 50 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~---~~~~~~l~~l~~~~~~~Lf~~~~~~~~~~~~~~ 124 (692)
.+|||+++.. +.|.++..-..+..+.+|.|..+-........ .+..+..++|..++...-+...+...... -
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~---~ 208 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD---I 208 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC---C
Confidence 7899999875 66988887777777888877777665443222 22233388899999988888887665444 3
Q ss_pred HHHHHHHHHHHhCCc
Q 047027 125 NKEIINEVVEECGRL 139 (692)
Q Consensus 125 ~~~~~~~i~~~c~gl 139 (692)
..+..+.|+++++|-
T Consensus 209 d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 209 DDDALKLIAKISDGD 223 (346)
T ss_pred CHHHHHHHHHHcCCc
Confidence 356788899999884
No 116
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.40 E-value=13 Score=38.96 Aligned_cols=96 Identities=7% Similarity=0.066 Sum_probs=60.1
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecch-hhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSH-TVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++.... .++.+...+.......++|++|.+. .+.+... -...+ +.+++.++..+.+...+......
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345689999998764 3555555554444566777766553 3332221 12344 99999999988887765443222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
-.++.+..|++.++|.|..+.
T Consensus 198 ---i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 198 ---TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 224567788999999886543
No 117
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=65.70 E-value=51 Score=38.40 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHHHh--CCeEEEEecCccCcC---C--cccccCCCCCCCCCeEEEE
Q 047027 9 LDLFKLQTEIATALKQSLLE-NEDKVRRAGRLLGMLKA--KEKFVLILDDTWEAF---P--LEEVGIPEPNEENGCKLVI 80 (692)
Q Consensus 9 ~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~--~kr~LlVlDdv~~~~---~--~~~l~~~~~~~~~gs~Iiv 80 (692)
.+...+...|.+++...... ..........++..+.. +...+||||+|+... | +..+... + ...+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEE
Confidence 45667777777777432221 11223344445544422 224589999998642 1 2222211 1 123455444
Q ss_pred --Eecc--------hhhhccccccceeeccCChHhHHHHHHhhhcCCC-CCCchhHHHHHHHHHHHhCCchhHHHHHHHH
Q 047027 81 --TTRS--------HTVCRSMKCKQVVVELLSKQEAFNLFIDGVGNSI-LQVPALNKEIINEVVEECGRLPLAIVTVAAS 149 (692)
Q Consensus 81 --TTR~--------~~v~~~~~~~~~~l~~l~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPlal~~~g~~ 149 (692)
+|.+ ..+...++...+...+.+.++-..++..++.... .-.+...+-+|+.++..-|-.-.||.++-.+
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 3332 2222233333233789999999999999876431 1223334445555555556666777666555
Q ss_pred h
Q 047027 150 M 150 (692)
Q Consensus 150 L 150 (692)
.
T Consensus 986 g 986 (1164)
T PTZ00112 986 F 986 (1164)
T ss_pred H
Confidence 4
No 118
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.28 E-value=14 Score=40.57 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=60.8
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEec-chhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTR-SHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|+++.. .+++.+...+........+|++|. ...+...... ...+ +.+++.++....+.+.+......
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999764 345566555544334555555554 3444332221 2345 99999999999998877544222
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
-.++.+..|++.++|.+--+
T Consensus 195 ---i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 ---AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 23567888999999988655
No 119
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=65.08 E-value=11 Score=39.04 Aligned_cols=96 Identities=8% Similarity=0.093 Sum_probs=56.3
Q ss_pred CeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
.+-+||+||+.... ..+.+...+.......++|+||.. ..+.+.... .... +.+++.++....+.+.+......
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~- 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD- 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 34589999997642 233333333222345677777754 222222221 1233 88999999988888876443222
Q ss_pred chhHHHHHHHHHHHhCCchhHHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
-..+....++++++|.+-.+..
T Consensus 204 --~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 204 --YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHH
Confidence 2256778888889887655543
No 120
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=64.18 E-value=91 Score=33.26 Aligned_cols=140 Identities=10% Similarity=0.111 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHhCC-eEEEEecCccCcC--CcccccCCCCC-CCCCeEEEEEecch-
Q 047027 11 LFKLQTEIATALKQSLLENEDKVRRAGRLLGMLKAKE-KFVLILDDTWEAF--PLEEVGIPEPN-EENGCKLVITTRSH- 85 (692)
Q Consensus 11 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~k-r~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~IivTTR~~- 85 (692)
...+++.|...+...........+..+.+-+...+.+ -+++|+|.++... .-..+...+.| .-++||+|+.---.
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS 298 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh
Confidence 4567777776663332222222445555555555544 6899999987631 11111122211 12566666544211
Q ss_pred -----hhhccc----cc-ccee-eccCChHhHHHHHHhhhcCCC--CCCchhHHHHHHHHHHHhCCchhHHHHHHHHh
Q 047027 86 -----TVCRSM----KC-KQVV-VELLSKQEAFNLFIDGVGNSI--LQVPALNKEIINEVVEECGRLPLAIVTVAASM 150 (692)
Q Consensus 86 -----~v~~~~----~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L 150 (692)
..+... +. .... .++-+.++..++|.+++.... ...+...+-.|++++.--|.+-.|+.++-+++
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 111111 11 1222 788899999999999976541 11122344445555555566666666655444
No 121
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=62.81 E-value=14 Score=38.60 Aligned_cols=99 Identities=6% Similarity=0.049 Sum_probs=59.7
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh-hhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT-VCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... .....+...+......+.+|++|.+.+ +.+... ....+ +.+++.++....+...+......
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558899998664 334455444444345667667765543 222221 11233 88889999888888766433222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
-.++.+..+++.++|.|..+....
T Consensus 196 ---i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 ---IEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ---CCHHHHHHHHHHcCCChHHHHHHH
Confidence 124677888999999887654433
No 122
>PRK06620 hypothetical protein; Validated
Probab=62.54 E-value=11 Score=36.09 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=52.3
Q ss_pred eEEEEecCccCcCCcccccCCCCC-CCCCeEEEEEecchhh-------hcccccccee-eccCChHhHHHHHHhhhcCCC
Q 047027 48 KFVLILDDTWEAFPLEEVGIPEPN-EENGCKLVITTRSHTV-------CRSMKCKQVV-VELLSKQEAFNLFIDGVGNSI 118 (692)
Q Consensus 48 r~LlVlDdv~~~~~~~~l~~~~~~-~~~gs~IivTTR~~~v-------~~~~~~~~~~-l~~l~~~~~~~Lf~~~~~~~~ 118 (692)
.-++++||+....+ ..+..-+.. ...|..||+|++...- ..++.+...+ +++++.++-..+..+.+....
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 34788999974321 112111100 1256689999875432 2333444456 899998888878777664322
Q ss_pred CCCchhHHHHHHHHHHHhCCchhHH
Q 047027 119 LQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 119 ~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
.. --+++++-+++++.|.--++
T Consensus 165 l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 VT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CC---CCHHHHHHHHHHccCCHHHH
Confidence 22 22567777777776655443
No 123
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.49 E-value=5.3 Score=23.55 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=12.6
Q ss_pred CCcEEEccCCCCccCCc
Q 047027 351 GLKVLNLSRTNIEVLPS 367 (692)
Q Consensus 351 ~L~~L~l~~~~~~~lp~ 367 (692)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 124
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.64 E-value=22 Score=39.89 Aligned_cols=99 Identities=7% Similarity=0.030 Sum_probs=61.4
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeE-EEEEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCK-LVITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~-IivTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
.++.-++|||+++.. ..++.|..-+..-..+.+ |++||....+...... ...+ ++.++.++..+.+.+.+.....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 345668999999875 345555555543334455 4455544555443321 1334 9999999999988876643322
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
. ...+..+.|++.++|.|.....+
T Consensus 202 ~---~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 A---HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 22455688999999998755444
No 125
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=60.03 E-value=16 Score=38.28 Aligned_cols=91 Identities=9% Similarity=0.084 Sum_probs=51.2
Q ss_pred CCeEEEEecCccCcC----------------CcccccCCCCC--CCCCeEEEEEecchhhhc-----ccccccee-eccC
Q 047027 46 KEKFVLILDDTWEAF----------------PLEEVGIPEPN--EENGCKLVITTRSHTVCR-----SMKCKQVV-VELL 101 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs~IivTTR~~~v~~-----~~~~~~~~-l~~l 101 (692)
....+|++|+++... .+..+...+.. ...+.+||.||......+ .......+ +...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 356899999997531 01112111111 124567888887543322 11223344 8999
Q ss_pred ChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCch
Q 047027 102 SKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLP 140 (692)
Q Consensus 102 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 140 (692)
+.++..++|..++........-. ...+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 99999999998876543221112 355666776653
No 126
>PF14516 AAA_35: AAA-like domain
Probab=57.99 E-value=1.3e+02 Score=31.04 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=39.1
Q ss_pred eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCC
Q 047027 98 VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGE 153 (692)
Q Consensus 98 l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~ 153 (692)
+.+++.+|...|..++-... -....+++....||+|.-+..++..+...
T Consensus 198 L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 198 LPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 89999999999987764321 12238999999999999999999888663
No 127
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.81 E-value=29 Score=40.40 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=62.4
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
.+++-++|||++... +..+.|..-+..-....++|.+|.+ ..+...... ...+ +++++.++....+.+.+.....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 356779999999775 4455555444433345566665555 444322211 2344 9999999999888876543322
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
. ...+.+..|++.++|.|..+..+
T Consensus 197 ~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 197 P---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 23567788999999988655444
No 128
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=57.14 E-value=24 Score=37.34 Aligned_cols=92 Identities=9% Similarity=0.073 Sum_probs=56.3
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhcccc--ccceeeccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++++|+++.. ...+.+...+..-.++..+|++|.+ ..+..... +..+++.+++.++....+....+. +
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~ 192 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D 192 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C
Confidence 34557888999875 2334444433333356666666655 34443332 233339999999999888754321 1
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
++.+..+++.++|.|.....
T Consensus 193 -----~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 193 -----PETARRAARASQGHIGRARR 212 (394)
T ss_pred -----HHHHHHHHHHcCCCHHHHHH
Confidence 34577889999999975543
No 129
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=56.39 E-value=2.4e+02 Score=29.50 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=77.1
Q ss_pred EEecCCCCHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHh-CCeEEEEecCccCcCC-----cccccCCCCCCCCCe
Q 047027 3 VTVSQPLDLFKLQTEIATALKQSLLENEDKVRRAGRLLGMLKA-KEKFVLILDDTWEAFP-----LEEVGIPEPNEENGC 76 (692)
Q Consensus 3 v~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~-~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs 76 (692)
|..-.......++.+|+++++..........+....+.+.+.+ ++.+.||||+++.... +..+......+ .+
T Consensus 78 INc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~ 155 (366)
T COG1474 78 INCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KV 155 (366)
T ss_pred EeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ce
Confidence 4444556678888899888863322223444555555555543 5889999999987422 22332222222 44
Q ss_pred EEEE--Eecchhhh--------ccccccceeeccCChHhHHHHHHhhhcCC---CCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 77 KLVI--TTRSHTVC--------RSMKCKQVVVELLSKQEAFNLFIDGVGNS---ILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 77 ~Iiv--TTR~~~v~--------~~~~~~~~~l~~l~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
+|+| ++-+.... ...+...++..+-+.+|-..++..++-.. ..-.+...+-.+...++..|-.-.|+
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ai 235 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAI 235 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHH
Confidence 4333 33333222 22233333378888999999999886433 22222233444444444444445555
Q ss_pred HHH
Q 047027 144 VTV 146 (692)
Q Consensus 144 ~~~ 146 (692)
..+
T Consensus 236 dil 238 (366)
T COG1474 236 DIL 238 (366)
T ss_pred HHH
Confidence 443
No 130
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.21 E-value=37 Score=36.66 Aligned_cols=98 Identities=9% Similarity=-0.016 Sum_probs=61.0
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEE-EEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLV-ITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
.+++-++|||++... ++++++...+........+| .||....+...... ...+ +.+++.++..+.+.+.+.....
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 345668999999874 44666655554333444544 45544444433321 2334 9999999888888877644322
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
. -.++....|++.++|.+.-...
T Consensus 199 ~---~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 199 Q---YDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred C---CCHHHHHHHHHHcCChHHHHHH
Confidence 2 2356778899999998865443
No 131
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=54.84 E-value=15 Score=36.11 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=34.2
Q ss_pred CEEEecCC--CCHHHHHHHHHHHhhhhhhccc-----hHHHHHHHHHHH-HHhCCeEEEEecCccCc
Q 047027 1 IWVTVSQP--LDLFKLQTEIATALKQSLLENE-----DKVRRAGRLLGM-LKAKEKFVLILDDTWEA 59 (692)
Q Consensus 1 ~wv~vs~~--~~~~~l~~~i~~~l~~~~~~~~-----~~~~~~~~~~~~-l~~~kr~LlVlDdv~~~ 59 (692)
+||.+++. +++.+++++|...+-....+.. .....+....+. ...++++++++|++...
T Consensus 49 ~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 49 LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 48997776 8999999998433221111111 111122222232 23579999999999763
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=54.63 E-value=25 Score=37.35 Aligned_cols=63 Identities=22% Similarity=0.110 Sum_probs=46.0
Q ss_pred CeEEEEecCccCcCCcccccCCCCCCCCCeEEEEEecchhhhc-----cc-ccccee-eccCChHhHHHHH
Q 047027 47 EKFVLILDDTWEAFPLEEVGIPEPNEENGCKLVITTRSHTVCR-----SM-KCKQVV-VELLSKQEAFNLF 110 (692)
Q Consensus 47 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IivTTR~~~v~~-----~~-~~~~~~-l~~l~~~~~~~Lf 110 (692)
++.+|+||.|.....|+.....+.+.++. +|++|+-+..... .. |-.... +-|++..|...+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 67899999999999998876666665555 8999988865532 22 222233 9999999887753
No 133
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=54.00 E-value=20 Score=34.61 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=54.4
Q ss_pred eEEEEecCccCcCCc--ccccCCCCC-CCCCe-EEEEEecchhhhc--------ccccccee-eccCChHhHHHHHHhhh
Q 047027 48 KFVLILDDTWEAFPL--EEVGIPEPN-EENGC-KLVITTRSHTVCR--------SMKCKQVV-VELLSKQEAFNLFIDGV 114 (692)
Q Consensus 48 r~LlVlDdv~~~~~~--~~l~~~~~~-~~~gs-~IivTTR~~~v~~--------~~~~~~~~-l~~l~~~~~~~Lf~~~~ 114 (692)
.-+||+||+.....+ +.+...+.. ...|. .||+|++...... .+.....+ +.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999754322 222222211 11344 3666666433221 22222344 99999887666666543
Q ss_pred cCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHh
Q 047027 115 GNSILQVPALNKEIINEVVEECGRLPLAIVTVAASM 150 (692)
Q Consensus 115 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L 150 (692)
...... -.++..+.+++.+.|.+..+..+-..+
T Consensus 171 ~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AERGLQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222222 224677778888888888876655443
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.71 E-value=34 Score=36.33 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=60.1
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEe-cchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITT-RSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... .+++.+...+....+.+.+|++| +-..+.+.... ...+ +.+++.++..+.+...+......
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999765 34666655555444566666555 44444433221 1234 88899999888877765332111
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
-.++.+..++++++|.+--+..
T Consensus 206 ---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 206 ---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2256788999999997754433
No 135
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.26 E-value=11 Score=22.23 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=7.6
Q ss_pred ccCCEEecccCCCc
Q 047027 396 LALQYLDLEATGIE 409 (692)
Q Consensus 396 ~~L~~L~l~~~~l~ 409 (692)
++|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=52.01 E-value=44 Score=34.37 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=56.7
Q ss_pred CeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecch-hhhcccc--ccceeeccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSH-TVCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
++-.+|||+++.. +..+++..-+..-..++.+|.||.+. .+..... +..+.+.+++.+++.+.+.......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~---- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES---- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC----
Confidence 3445578999875 33444444433323566777777664 4443332 3333399999999998887654111
Q ss_pred chhHHHHHHHHHHHhCCchhHHHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
.++.+..++..++|.|.....+
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1344567789999999765544
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.95 E-value=39 Score=37.87 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=61.6
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-+||||++... +..+.|...+..-.....+|++|.+ ..+..... -...+ +.+++.++....+...+......
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~ 197 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD 197 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678999999775 3345555544332345566665554 44433221 11344 99999999998888766443222
Q ss_pred CchhHHHHHHHHHHHhCCch-hHHHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLP-LAIVTVAAS 149 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glP-lal~~~g~~ 149 (692)
-..+.+..|++.++|.. .|+..+...
T Consensus 198 ---id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 198 ---YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22467788899999854 566655543
No 138
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.11 E-value=3.2e+02 Score=28.78 Aligned_cols=154 Identities=13% Similarity=0.086 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchhhhc-----ccccccee-eccCChHhHH
Q 047027 36 AGRLLGMLKAKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHTVCR-----SMKCKQVV-VELLSKQEAF 107 (692)
Q Consensus 36 ~~~~~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~~-----~~~~~~~~-l~~l~~~~~~ 107 (692)
.+.-.+.+..|+|.+|.+|.|... .|-+.+..... .|..|+|-+..++=.- ...-..++ +++|+.+|..
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~ 169 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIK 169 (436)
T ss_pred HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHH
Confidence 333334444578999999999763 45555654444 6888777444432110 01223456 9999999999
Q ss_pred HHHHhhhcCCCCCC----chhHHHHHHHHHHHhCCchhHHHH----HHHHhcCCc--CHHHHHHHHHHHhhccccCCCch
Q 047027 108 NLFIDGVGNSILQV----PALNKEIINEVVEECGRLPLAIVT----VAASMSGEE--EIHEWRNALNELRGLVRSRNGVN 177 (692)
Q Consensus 108 ~Lf~~~~~~~~~~~----~~~~~~~~~~i~~~c~glPlal~~----~g~~L~~~~--~~~~w~~~~~~l~~~~~~~~~~~ 177 (692)
+++.+.+-...... ..-.++....++..++|.-.++-- +..+-+... ..+..+..+.+-....-...+.+
T Consensus 170 ~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~h 249 (436)
T COG2256 170 KLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAH 249 (436)
T ss_pred HHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchH
Confidence 99988432221110 112245667788888886544322 222222211 22333333332111111112334
Q ss_pred hhhhhhhhhccccCC
Q 047027 178 ADVLGRLEFSYHRLK 192 (692)
Q Consensus 178 ~~~~~~l~~sy~~L~ 192 (692)
=++..++.-|....+
T Consensus 250 YdliSA~hKSvRGSD 264 (436)
T COG2256 250 YDLISALHKSVRGSD 264 (436)
T ss_pred HHHHHHHHHhhccCC
Confidence 466777777777665
No 139
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.46 E-value=43 Score=37.71 Aligned_cols=97 Identities=8% Similarity=0.031 Sum_probs=60.7
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh-hhccc-ccccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT-VCRSM-KCKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|||+|... ...+.+...+..-..+.++|++|.+.. +.... .-...+ +.+++.++..+.+.+.+......
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 55668999999875 344555544443335667777776643 22111 112344 99999999998888776543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
...+....|++.++|.+..+..
T Consensus 197 ---id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 197 ---ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2355678889999997755543
No 140
>PLN03025 replication factor C subunit; Provisional
Probab=49.21 E-value=21 Score=36.59 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=56.6
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecch-hhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSH-TVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
++.-+++||+++... +.+.+...+......+++|++|... .+.+.... ...+ +.+++.++....+...+......
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 346699999998752 2233333333333566777776542 22221111 1234 88999999998888776543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
-.++....+++.++|....+
T Consensus 178 ---i~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 178 ---YVPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 12456788899998876443
No 141
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.58 E-value=48 Score=37.62 Aligned_cols=98 Identities=7% Similarity=0.034 Sum_probs=58.9
Q ss_pred CCeEEEEecCccCcCC--cccccCCCCCCCCCeEEEEEecch-hhhccc-ccccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAFP--LEEVGIPEPNEENGCKLVITTRSH-TVCRSM-KCKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|||++..... ...+...+..-....++|++|.+. .+.... +-...+ +.+++.++....+.+.+......
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4567899999976432 333443333222455666666553 332222 111233 88999999988888776544222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-..+....|++.++|.+.-+..+
T Consensus 198 ---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 198 ---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred ---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 23457788999999888655443
No 142
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.53 E-value=56 Score=36.19 Aligned_cols=93 Identities=6% Similarity=0.027 Sum_probs=56.4
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... .+++.+...+.......++|.+|.+ ..+..... -...+ +.+++.++....+.+.+......
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 56679999999764 3455555555443355555544444 44442222 12344 99999999887777654332222
Q ss_pred CchhHHHHHHHHHHHhCCchh
Q 047027 121 VPALNKEIINEVVEECGRLPL 141 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPl 141 (692)
..++....|++.++|.+.
T Consensus 198 ---~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 198 ---SDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred ---CCHHHHHHHHHHcCCCHH
Confidence 235567788999998664
No 143
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=47.44 E-value=45 Score=37.64 Aligned_cols=100 Identities=7% Similarity=0.100 Sum_probs=60.7
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccc--cccceeeccCChHhHHHHHHhhhcCCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSM--KCKQVVVELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~--~~~~~~l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
.+++-++|||++... ...+.+..-+..-....++|.+|.+ ..+.... .+..+.+.+++.++....+.+.......
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999875 3455554444333345555555554 4443322 2223339999999999888876533222
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
. ..++....|++.++|.+..+..+.
T Consensus 197 ~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 197 P---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 224566789999999877554443
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=47.20 E-value=27 Score=35.68 Aligned_cols=94 Identities=6% Similarity=0.021 Sum_probs=55.1
Q ss_pred CeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
.+-+|++|+++... ....+...+......+++|+++.. ..+.+... ....+ +.+++.++....+...+......
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~- 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE- 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-
Confidence 35689999987642 233343333333345667766643 22222111 11234 88999999988888776543222
Q ss_pred chhHHHHHHHHHHHhCCchhHH
Q 047027 122 PALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal 143 (692)
-.++....+++.++|.+.-+
T Consensus 181 --i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 181 --ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 22456788889999887654
No 145
>PRK04195 replication factor C large subunit; Provisional
Probab=45.66 E-value=1.4e+02 Score=32.65 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=55.3
Q ss_pred CeEEEEecCccCcCC------cccccCCCCCCCCCeEEEEEecchh-hhc-ccc-cccee-eccCChHhHHHHHHhhhcC
Q 047027 47 EKFVLILDDTWEAFP------LEEVGIPEPNEENGCKLVITTRSHT-VCR-SMK-CKQVV-VELLSKQEAFNLFIDGVGN 116 (692)
Q Consensus 47 kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IivTTR~~~-v~~-~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~ 116 (692)
++-+||+|+++.... +..+...+.. .+..||+|+.+.. ... ... ..... +.+++.++....+.+.+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 577999999987422 3333333221 2345666664422 111 111 12233 8889999988888877654
Q ss_pred CCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 117 SILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
..... ..+....|++.++|....+..
T Consensus 176 egi~i---~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 176 EGIEC---DDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 43332 246788899999987666543
No 146
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=45.11 E-value=58 Score=36.41 Aligned_cols=92 Identities=10% Similarity=0.070 Sum_probs=54.8
Q ss_pred EEEEecCccCc---CCcc-cccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHhh
Q 047027 49 FVLILDDTWEA---FPLE-EVGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFIDG 113 (692)
Q Consensus 49 ~LlVlDdv~~~---~~~~-~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~~ 113 (692)
=+|||||+... +.|+ .+..-+.. ...|..|||||+.. .+..++.....+ ++..+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 38999999764 2232 12211111 12355688888752 233444555566 9999999999999988
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 114 VGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
+...... --++++.-|++++.+..-.|
T Consensus 459 a~~r~l~---l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 459 AVQEQLN---APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHhcCCC---CCHHHHHHHHHhccCCHHHH
Confidence 7654333 22466667777766544333
No 147
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.04 E-value=72 Score=34.71 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=58.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... ++.+.+...+........+|++|.+ ..+.+.... ...+ +.+++.++....+.+.+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45679999999764 3344554444432334454444433 334332211 2344 89999999988888876443222
Q ss_pred CchhHHHHHHHHHHHhCC-chhHHHHHHH
Q 047027 121 VPALNKEIINEVVEECGR-LPLAIVTVAA 148 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~g-lPlal~~~g~ 148 (692)
-.++....|+++++| ++.|+..+-.
T Consensus 196 ---i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 ---IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 224567778888865 4566655543
No 148
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=44.49 E-value=50 Score=36.39 Aligned_cols=98 Identities=7% Similarity=0.048 Sum_probs=60.1
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecch-hhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSH-TVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... +..+++...+..-.+.+++|++|.+. .+...... ...+ +.+++.++....+.+.+......
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999764 33445544443333567777777663 22221211 2344 99999999888887765443222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-.++.+..|++.++|.+..+..+
T Consensus 196 ---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 196 ---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 22467788999999988655444
No 149
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=43.72 E-value=11 Score=21.38 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=5.3
Q ss_pred CCCcEEEccCCCC
Q 047027 350 HGLKVLNLSRTNI 362 (692)
Q Consensus 350 ~~L~~L~l~~~~~ 362 (692)
++|+.|++++|.|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3445555555543
No 150
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.69 E-value=60 Score=38.02 Aligned_cols=96 Identities=8% Similarity=0.079 Sum_probs=58.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEe-cchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITT-RSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|||++... +..+.|...+..-...+.+|++| ....+...... ...+ +..++.++..+.+.+........
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 44557889999875 34555555555444566656555 44445443322 2344 88899988888877765333222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
...+....|++.++|.+..+.
T Consensus 199 ---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 199 ---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 224566788999999775443
No 151
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.12 E-value=57 Score=34.20 Aligned_cols=95 Identities=5% Similarity=0.063 Sum_probs=54.3
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEe-cchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITT-RSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++++|++.... .++.+...+........+|++| +...+.+... ....+ ..+++.++....+...+......
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 345589999987642 3455443333323445555555 3333332221 12244 88899999888888766443222
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
-..+.+..++++++|.+-.+
T Consensus 187 ---i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 187 ---FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred ---CCHHHHHHHHHhCCCCHHHH
Confidence 12467788888888866533
No 152
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.01 E-value=63 Score=36.38 Aligned_cols=98 Identities=6% Similarity=0.025 Sum_probs=59.8
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
++.-++|||+|+.. ..++.+...+..-....++|++|.+ ..+..... -...+ +++++.++....+.+.+......
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558899999875 3455555544433345566655544 44432221 12344 99999999988888776443222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
...+....|++.++|.+..+..+
T Consensus 203 ---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 203 ---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22456788889999877655443
No 153
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=38.80 E-value=1.3e+02 Score=30.22 Aligned_cols=140 Identities=15% Similarity=0.060 Sum_probs=76.4
Q ss_pred EEecCCCCHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHhCCeEEEEecCccCc------CC---cccccCCCCCCC
Q 047027 3 VTVSQPLDLFKLQTEIATALKQSLLENEDKVRRAGRLLGMLKAKEKFVLILDDTWEA------FP---LEEVGIPEPNEE 73 (692)
Q Consensus 3 v~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv~~~------~~---~~~l~~~~~~~~ 73 (692)
|.+...++..++...|+.+++.................+-+..=+-=+||+|.+.+. +| ++.++ .+.+--
T Consensus 101 vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL 179 (302)
T PF05621_consen 101 VQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNEL 179 (302)
T ss_pred EecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhcc
Confidence 566788899999999999999876554444433334433332223447899999763 11 12221 122223
Q ss_pred CCeEEEEEecchhhhccccc-----ccee-eccCChHhHH-HHHHhhhcCC--CCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 74 NGCKLVITTRSHTVCRSMKC-----KQVV-VELLSKQEAF-NLFIDGVGNS--ILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 74 ~gs~IivTTR~~~v~~~~~~-----~~~~-l~~l~~~~~~-~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
+-+-|.|-|++..-+-.... -..+ +.....++-+ .|+......- ..+..-..++++.+|.+.++|..=.+
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 45567777766433321110 1122 6666654444 4433221110 11112244789999999999986443
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=38.80 E-value=90 Score=33.79 Aligned_cols=95 Identities=7% Similarity=0.051 Sum_probs=56.2
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEec-chhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTR-SHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... +..+.+...+........+|++|. ...+.+.... ...+ +.+++.++....+...+......
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45678899998764 234444444443334556665553 3333332221 2234 88999999888887765432222
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
-.++.+..++++++|.+..+
T Consensus 200 ---i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 200 ---TSREALLPIARAAQGSLRDA 219 (451)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 22467788999999866433
No 155
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.77 E-value=1.1e+02 Score=34.60 Aligned_cols=93 Identities=9% Similarity=0.016 Sum_probs=55.5
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEe-cchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITT-RSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|+++... +.+.|...+..-...+.+|.+| +...+.+... ....+ +.+++.++....+.+.+......
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 445578999987753 3455555444433455655444 4444443322 22344 89999999887777655432211
Q ss_pred CchhHHHHHHHHHHHhCCchh
Q 047027 121 VPALNKEIINEVVEECGRLPL 141 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPl 141 (692)
-..+.+..++++++|..-
T Consensus 206 ---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ---IDADALQLIARKAQGSMR 223 (620)
T ss_pred ---CCHHHHHHHHHHhCCCHH
Confidence 225677889999999554
No 156
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.25 E-value=55 Score=37.72 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=54.3
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh----hhccc-ccccee-eccCChHhHHHHHHhhhcCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT----VCRSM-KCKQVV-VELLSKQEAFNLFIDGVGNS 117 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~----v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~ 117 (692)
+++.+||||+++.. .+++.+...+. .|+.++|+++.+. +.... .-...+ +++++.++...++.+.+...
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 45779999999764 44555554333 4666666433322 11111 112345 99999999999998776410
Q ss_pred ----CCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 118 ----ILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 118 ----~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
......-.++....+++.+.|.-..+
T Consensus 185 ~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 185 ERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 00001123456788888888864433
No 157
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.42 E-value=62 Score=36.54 Aligned_cols=95 Identities=9% Similarity=0.071 Sum_probs=58.8
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEE-Eecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVI-TTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Iiv-TTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++=++|+|++... +.+++|...+..-...+.+|. ||+...+.+.... ...+ +.+++.++....+.+.+......
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558899998775 335555555444335666555 4455555543321 2344 89999999988888766443222
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
...+.+..|++.++|..--+
T Consensus 200 ---i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 200 ---AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred ---CCHHHHHHHHHHcCCCHHHH
Confidence 22456788999999866544
No 158
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.27 E-value=61 Score=36.45 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=59.6
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|||++... +..+.|...+......+.+|++|.+ ..+...... ...+ +..++.++....+.+.+......
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 35668999999764 3355555444433356666666644 333332211 1233 88888888888887776543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-..+.+..+++.++|.+..+...
T Consensus 199 ---i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 199 ---LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22467788999999988755443
No 159
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.85 E-value=69 Score=35.47 Aligned_cols=96 Identities=5% Similarity=0.016 Sum_probs=56.8
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++.... ..+.+...+..-....++|.+|.+ ..+...... ...+ +++++.++..+.+.+.+......
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456689999997653 344444444433345666665544 333322211 1233 88999999888777665432222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
..++....|++.++|.+..+.
T Consensus 198 ---~~~~al~~la~~s~Gslr~al 218 (527)
T PRK14969 198 ---FDATALQLLARAAAGSMRDAL 218 (527)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 224566788889999775443
No 160
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.54 E-value=61 Score=35.34 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=59.3
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEec-chhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTR-SHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR-~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... ++.+++...+..-.+..++|.+|. ...+...... ...+ +.+++.++....+.+.+......
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45568999999764 234555544444345666666554 3444433321 2334 88999999998888877554222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
-.++....|++.++|.+..+.
T Consensus 195 ---i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 195 ---HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHH
Confidence 224567788999988776443
No 161
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=35.19 E-value=31 Score=20.61 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=9.0
Q ss_pred CCCcEEEccCCCCc
Q 047027 350 HGLKVLNLSRTNIE 363 (692)
Q Consensus 350 ~~L~~L~l~~~~~~ 363 (692)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777654
No 162
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=34.57 E-value=43 Score=35.73 Aligned_cols=92 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred EEEEecCccCcCC---cc-cccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHhh
Q 047027 49 FVLILDDTWEAFP---LE-EVGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFIDG 113 (692)
Q Consensus 49 ~LlVlDdv~~~~~---~~-~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~~ 113 (692)
-+|||||++.... +. .+..-+.. ...|..||+||... .+..++...... +++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999975311 11 12211110 01344677777541 122233333344 8899999999999988
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 114 VGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
+...... --+++...|++++.|..-.+
T Consensus 281 ~~~~~~~---l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 281 AEEEGLE---LPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHcCCC---CCHHHHHHHHHhcCCCHHHH
Confidence 7654333 22567788888888766544
No 163
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=31.86 E-value=1.5e+02 Score=34.09 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEE-EEecchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLV-ITTRSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ii-vTTR~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... ..+.++...+..-.....+| +||+...+..... -...+ +.+++.++....+...+......
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999764 34555554443323444544 5554444443221 12344 99999999988887765332222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
...+.+..+++.++|-+.-+..
T Consensus 197 ---id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 197 ---YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2245577899999887654433
No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=31.44 E-value=1.3e+02 Score=33.91 Aligned_cols=98 Identities=8% Similarity=-0.000 Sum_probs=59.7
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEe-cchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITT-RSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++.... ..+.+...+..-..++++|++| ....+..... -...+ +..++.++....+.+.+......
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 345578999997653 3445554444333566665554 4444443322 12344 88999999998888876543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-..+....|++.++|.+..+...
T Consensus 211 ---i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 211 ---VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 22466788899999988665443
No 165
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=30.54 E-value=64 Score=21.69 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=7.5
Q ss_pred cccccCceeEEEEe
Q 047027 560 IGKFSHDLKVIRFI 573 (692)
Q Consensus 560 l~~l~~~L~~L~l~ 573 (692)
.+.+|++|++|.+.
T Consensus 29 ~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 29 PGSLPNSLKSLSFG 42 (44)
T ss_pred CCccCCCceEEEee
Confidence 34455566666554
No 166
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=30.13 E-value=83 Score=32.18 Aligned_cols=92 Identities=12% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCeEEEEecCccCcCC--cccccCCCCCCCCCeEEEEEecc-hhhhcccc--ccceeeccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAFP--LEEVGIPEPNEENGCKLVITTRS-HTVCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++=++|||+++.... -.++..-+..-..++.+|++|.+ ..+..... +..+.+.+++.+++...+.... . +
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-~---~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-V---S 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-C---C
Confidence 4566889999987532 23333333222246666666654 55554443 2333388899999888876531 1 1
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
+..+..++..++|.|.....+
T Consensus 188 -----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 -----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 233677899999999865443
No 167
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=28.75 E-value=94 Score=31.75 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=56.0
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
+++-++|+|+++... +..++...+..-.+..-|++|++-..+.+.... ...+ +.+++.++..+.+.+......
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---
Confidence 456688999987653 344444443322234344455555555554422 2333 999999999999987653221
Q ss_pred chhHHHHHHHHHHHhCCchhHHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
.+.....++..++|.|..+..
T Consensus 200 ---~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ---LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ---chhHHHHHHHHcCCCHHHHHH
Confidence 111235788999999976544
No 168
>PRK04132 replication factor C small subunit; Provisional
Probab=28.59 E-value=2.2e+02 Score=33.48 Aligned_cols=95 Identities=7% Similarity=0.043 Sum_probs=58.7
Q ss_pred CeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
+.-++|||+++... +.+++..-+.......++|.+|.+ ..+...... ...+ +.+++.++....+...+......
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~- 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE- 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-
Confidence 34699999998863 455555444433345566665555 444333221 2344 89999988888877665432222
Q ss_pred chhHHHHHHHHHHHhCCchhHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~ 144 (692)
-.++....|++.|+|.+..+.
T Consensus 709 --i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 709 --LTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 124578899999999885543
No 169
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=28.47 E-value=78 Score=33.36 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=34.7
Q ss_pred CEEEecCC--CCHHHHHHHHHHHhhhhhhccchH-----HHH-HHHHHHHHHhCCeEEEEecCccC
Q 047027 1 IWVTVSQP--LDLFKLQTEIATALKQSLLENEDK-----VRR-AGRLLGMLKAKEKFVLILDDTWE 58 (692)
Q Consensus 1 ~wv~vs~~--~~~~~l~~~i~~~l~~~~~~~~~~-----~~~-~~~~~~~l~~~kr~LlVlDdv~~ 58 (692)
+||.++.. .++.+++++|+..+-....+.... ... .+...+....|++++|++|.+..
T Consensus 201 v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 201 LIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred EEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhH
Confidence 48888855 789999999965443222222111 111 22222223468999999999965
No 170
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.13 E-value=1.2e+02 Score=33.30 Aligned_cols=99 Identities=6% Similarity=0.002 Sum_probs=56.7
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEe-cchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITT-RSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... ...+++...+..-.....+|++| +-..+..... ....+ +.+++.++....+.+.+......
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45669999998764 23444444443333455555555 3333332221 11234 88899998888877765433222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
...+.+..+++.++|.+..+....
T Consensus 198 ---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 198 ---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 224567778888888776554433
No 171
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=27.57 E-value=97 Score=28.07 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCeEEEEecCc------cCcCCcccccCCCCCCCCCeEEEEEec-chh----hhcccccc-cee-eccCChHhHHHHHHh
Q 047027 46 KEKFVLILDDT------WEAFPLEEVGIPEPNEENGCKLVITTR-SHT----VCRSMKCK-QVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 46 ~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~IivTTR-~~~----v~~~~~~~-~~~-l~~l~~~~~~~Lf~~ 112 (692)
+.+-+||+.+. +....++.+...+....+++.+|+.+. ..+ ..+..... .+. ..+++..+.......
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~ 135 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKE 135 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHH
Confidence 35666666666 234556667666666567777777777 211 11222221 222 556666666666665
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
.+...... -..+.++.++++.++...++
T Consensus 136 ~~~~~g~~---i~~~a~~~L~~~~~~d~~~l 163 (172)
T PF06144_consen 136 RAKKNGLK---IDPDAAQYLIERVGNDLSLL 163 (172)
T ss_dssp HHHHTT-E---E-HHHHHHHHHHHTT-HHHH
T ss_pred HHHHcCCC---CCHHHHHHHHHHhChHHHHH
Confidence 55332111 22455666666666666554
No 172
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.83 E-value=97 Score=34.13 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=56.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecch-hhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSH-TVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~-~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
++.-++|||+|... ...+++...+..-....++|.+|.+. .+...... ...+ +.+++.++....+.+.+......
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45568899999874 34454444444333566666665443 33322211 1234 88898888777666555333222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
-.++....|++.++|.+..+..
T Consensus 198 ---~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 198 ---FENAALDLLARAANGSVRDALS 219 (509)
T ss_pred ---CCHHHHHHHHHHcCCcHHHHHH
Confidence 1234567788888887765543
No 173
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=26.15 E-value=63 Score=35.01 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=54.9
Q ss_pred eEEEEecCccCcC---Cc-ccccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAF---PL-EEVGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+|||||++... .+ +.+..-+.. ...|..||+||... .+..++...... +++++.++-..++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 4489999996531 11 122211110 01344577777643 123334443445 899999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
.+...... --+++...|++.+.|..-.+
T Consensus 292 ~~~~~~~~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEGID---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcCCC---CCHHHHHHHHcCcCCCHHHH
Confidence 87643222 22567888888888876644
No 174
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=25.67 E-value=2.4e+02 Score=29.02 Aligned_cols=90 Identities=8% Similarity=0.041 Sum_probs=56.1
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhcccc--ccceeeccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++=.+|+|+++... ...++..-+..-.+++.+|.+|.+ ..+..... +..+.+.+++.+++.+.+.......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~--- 182 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE--- 182 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC---
Confidence 455577899998753 344444444333356677767665 45554433 2333399999999988887654211
Q ss_pred CchhHHHHHHHHHHHhCCchhHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal 143 (692)
...+...+..++|.|...
T Consensus 183 -----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 -----ISEILTALRINYGRPLLA 200 (325)
T ss_pred -----hHHHHHHHHHcCCCHHHH
Confidence 123567788999999643
No 175
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=25.62 E-value=1.1e+02 Score=34.29 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=55.1
Q ss_pred CeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEe-cchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITT-RSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
++-++|+|+++.. .++.++...+..-.....+|.+| .-..+..... -...+ +.+++.++....+...+......
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~- 197 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK- 197 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-
Confidence 3446999999764 34555554443323455555554 4334432221 12234 89999999988888766433222
Q ss_pred chhHHHHHHHHHHHhCCchhHH
Q 047027 122 PALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal 143 (692)
-..+.+..+++.++|.+..+
T Consensus 198 --Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 198 --IEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred --CCHHHHHHHHHHcCCcHHHH
Confidence 12456788899999966543
No 176
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=25.26 E-value=65 Score=29.09 Aligned_cols=46 Identities=26% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHhCCeEEEEecCccCcCC-----cccccCCCCCCCCCeEEEEEecchh
Q 047027 41 GMLKAKEKFVLILDDTWEAFP-----LEEVGIPEPNEENGCKLVITTRSHT 86 (692)
Q Consensus 41 ~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~IivTTR~~~ 86 (692)
+.+..++-=|||||++...-. .+.+...+.....+.-||+|.|+..
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 333344455999999966422 2233333333336779999999954
No 177
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=25.01 E-value=92 Score=32.78 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=34.3
Q ss_pred CEEEecCCC--CHHHHHHHHHHHhhhhhhccchHH-----HHHHHHHHHH-HhCCeEEEEecCccC
Q 047027 1 IWVTVSQPL--DLFKLQTEIATALKQSLLENEDKV-----RRAGRLLGML-KAKEKFVLILDDTWE 58 (692)
Q Consensus 1 ~wv~vs~~~--~~~~l~~~i~~~l~~~~~~~~~~~-----~~~~~~~~~l-~~~kr~LlVlDdv~~ 58 (692)
+||.+++.+ ++.+++++|.-.+-....++.... ..+-...+.+ ..|++++|++|++..
T Consensus 202 ~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 202 LIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred EEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 499999888 888888888643322222221111 1111222222 367999999999965
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=24.80 E-value=83 Score=33.94 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=52.5
Q ss_pred eEEEEecCccCc---CCc-ccccCCCCC-CCCCeEEEEEec-chh--------hhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEA---FPL-EEVGIPEPN-EENGCKLVITTR-SHT--------VCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IivTTR-~~~--------v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+||+||+... ..+ +.+...+.. ...|..||+||. ... +..++...... +++.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 448999999743 111 112111110 013446888874 321 22223333445 899999999999988
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 143 (692)
.+...... --++++..|++.+.|.--.+
T Consensus 275 ~~~~~~~~---l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGE---LPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCC---CCHHHHHHHHhccccCHHHH
Confidence 87543222 22567788888877754433
No 179
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=24.53 E-value=1.3e+02 Score=30.26 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=39.0
Q ss_pred eEEEEecCccCc-----------CCcccccCCCCCCCCCeEEEEEecchhhhcccc--------cccee-eccCChHhHH
Q 047027 48 KFVLILDDTWEA-----------FPLEEVGIPEPNEENGCKLVITTRSHTVCRSMK--------CKQVV-VELLSKQEAF 107 (692)
Q Consensus 48 r~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~v~~~~~--------~~~~~-l~~l~~~~~~ 107 (692)
.-+|+||++... +.++.+...+.....+-+||.+|.....-.... ....+ +++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 468899999632 112333334433345557777765432211111 12233 8889999999
Q ss_pred HHHHhhhcC
Q 047027 108 NLFIDGVGN 116 (692)
Q Consensus 108 ~Lf~~~~~~ 116 (692)
.++.+.+..
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998877643
No 180
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=24.44 E-value=2.6e+02 Score=28.96 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=54.7
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhcccc--ccceeeccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK--CKQVVVELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~--~~~~~l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++=.+|+|+++.. +...++..-+..-.+++.+|.+|.+ ..+..... +..+.+.+++.++..+.+.... . +
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-~---~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-V---A 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-C---C
Confidence 34557789999875 3455555444433456665555555 55554432 3333399999999998887652 1 1
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
. ...++..++|.|.....+
T Consensus 207 ---~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ---D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 181
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=24.24 E-value=24 Score=33.81 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred CeEEEEecCccCcCC---cccccCCCCCCCCCeEEEEEecchhhhccc
Q 047027 47 EKFVLILDDTWEAFP---LEEVGIPEPNEENGCKLVITTRSHTVCRSM 91 (692)
Q Consensus 47 kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IivTTR~~~v~~~~ 91 (692)
..-++|||||...-+ ...+...+....+.+.+||||.++.++...
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344889999987422 222333333334568899999999888755
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=24.16 E-value=2.6e+02 Score=28.82 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHHHHHHH----hCCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecc-hhhhcccc--ccceeeccCChHh
Q 047027 35 RAGRLLGMLK----AKEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRS-HTVCRSMK--CKQVVVELLSKQE 105 (692)
Q Consensus 35 ~~~~~~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~--~~~~~l~~l~~~~ 105 (692)
.++.+.+.+- .+++=.+|||+++... .-.++..-+..-..++.+|.+|.+ ..+..... +..+.+.+++.++
T Consensus 92 qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~ 171 (334)
T PRK07993 92 AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_pred HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHH
Confidence 3444544442 2456688999998753 344444444333357777766665 44554432 3333488999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHH
Q 047027 106 AFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 106 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
+...+....+. + .+.+..++..++|.|....
T Consensus 172 ~~~~L~~~~~~---~-----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 172 ALTWLSREVTM---S-----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHccCC---C-----HHHHHHHHHHcCCCHHHHH
Confidence 88877654221 1 2346788999999996443
No 183
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=23.79 E-value=1.8e+02 Score=32.57 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=58.6
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... .+++++...+..-.....+|.+|.+ ..+.+.... ...+ ..+++.++....+.+.+......
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999765 3355565555443456666655543 333332211 2234 88888888888887766433222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
-.++.+..|++.++|.+..+..
T Consensus 198 ---id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 198 ---YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2246677788899997765443
No 184
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.72 E-value=1.6e+02 Score=33.37 Aligned_cols=98 Identities=8% Similarity=0.038 Sum_probs=57.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecc-hhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRS-HTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~-~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... +.++.|...+..-.....+|.+|.+ ..+...... ...+ +..++.++....+.+.+......
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 34568899999865 3455555544433345555555544 333332211 1233 77888888887777665443212
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-..+.+..+++.++|.+..+..+
T Consensus 200 ---is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 ---IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11356788999999987655443
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=22.71 E-value=99 Score=26.49 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=24.2
Q ss_pred CCeEEEEecCccCc-----CCcccccCCCCC---CCCCeEEEEEecchh
Q 047027 46 KEKFVLILDDTWEA-----FPLEEVGIPEPN---EENGCKLVITTRSHT 86 (692)
Q Consensus 46 ~kr~LlVlDdv~~~-----~~~~~l~~~~~~---~~~gs~IivTTR~~~ 86 (692)
.+..++|+||++.. ..+..+...... ...+.+||+||....
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 46789999999863 112222122211 136778888887655
No 186
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.96 E-value=2.9e+02 Score=31.06 Aligned_cols=94 Identities=11% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEe-cchhhhccccc-ccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITT-RSHTVCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTT-R~~~v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++-++|+|++... ...++|...+..-.....+|.+| ....+...... ...+ +..++.++..+.+.+.+......
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45558899998764 34555554444433455655544 44444433221 2344 88999998888887765443222
Q ss_pred CchhHHHHHHHHHHHhCCchhH
Q 047027 121 VPALNKEIINEVVEECGRLPLA 142 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPla 142 (692)
-..+....|++.++|.+..
T Consensus 197 ---i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 197 ---VDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred ---CCHHHHHHHHHHcCCCHHH
Confidence 1245667788899997753
No 187
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=20.61 E-value=5.9e+02 Score=25.08 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHhhhhhhccc--hHHHHHHHHHHHHHhCCe-EEEEecCccCc--CCccccc---CCCCCCCCCeEEEE
Q 047027 9 LDLFKLQTEIATALKQSLLENE--DKVRRAGRLLGMLKAKEK-FVLILDDTWEA--FPLEEVG---IPEPNEENGCKLVI 80 (692)
Q Consensus 9 ~~~~~l~~~i~~~l~~~~~~~~--~~~~~~~~~~~~l~~~kr-~LlVlDdv~~~--~~~~~l~---~~~~~~~~gs~Iiv 80 (692)
.....+...|..++........ ........+.....+++| +.+++|+..+. ++++.++ ..-.++.+-=+|+.
T Consensus 90 ~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL 169 (269)
T COG3267 90 LSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVL 169 (269)
T ss_pred hhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeee
Confidence 4455666667666655211111 122333445555567888 99999998764 2333222 11111111122333
Q ss_pred Eecch-------hhhccc--ccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 81 TTRSH-------TVCRSM--KCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 81 TTR~~-------~v~~~~--~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
.-.-+ .+.... ....-+ +.|++.++....+.....+...+.+--.++....|.....|.|.++..++
T Consensus 170 ~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 170 IGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred cCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 33211 111111 112215 99999997777777665444222121234567778888899999987665
No 188
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=20.13 E-value=4.4e+02 Score=28.50 Aligned_cols=89 Identities=11% Similarity=0.087 Sum_probs=49.3
Q ss_pred eEEEEecCccCcCC--c--ccccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAFP--L--EEVGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~~--~--~~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.-+|++||+..... + +.+...+.. ...|..||+||... .+..++...... +.+++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34889999876422 1 112211110 01355788887542 223333333455 899999999999988
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCc
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRL 139 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~gl 139 (692)
++....... -+++..-+++.+.|.
T Consensus 283 k~~~~~~~l---~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIRI---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCCC---CHHHHHHHHHhcCCC
Confidence 875443221 245555566666543
Done!