Query 047027
Match_columns 692
No_of_seqs 323 out of 3656
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-33 5E-38 311.1 17.3 258 1-280 188-472 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.1E-27 3.6E-32 267.2 14.0 230 1-272 185-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-26 4.4E-31 283.1 16.4 252 1-279 183-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 3E-23 1E-27 232.2 17.7 249 1-276 183-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 4.9E-22 1.7E-26 223.6 26.6 353 285-682 18-425 (606)
6 4ecn_A Leucine-rich repeat pro 99.9 5.3E-23 1.8E-27 235.6 18.8 349 289-677 436-825 (876)
7 4fmz_A Internalin; leucine ric 99.9 1.4E-21 4.9E-26 203.6 23.9 301 301-668 44-344 (347)
8 4fmz_A Internalin; leucine ric 99.9 2.1E-21 7.3E-26 202.3 22.6 297 323-685 42-340 (347)
9 4eco_A Uncharacterized protein 99.9 4E-22 1.4E-26 224.4 16.3 160 293-463 198-390 (636)
10 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 4E-26 207.7 18.6 304 299-668 43-350 (390)
11 1o6v_A Internalin A; bacterial 99.9 1.6E-20 5.3E-25 203.8 26.7 220 289-542 57-276 (466)
12 3vq2_A TLR4, TOLL-like recepto 99.9 7.2E-21 2.5E-25 214.0 24.8 148 287-435 41-197 (606)
13 2z63_A TOLL-like receptor 4, v 99.9 1.2E-20 4.1E-25 210.6 26.1 155 287-452 16-175 (570)
14 2z7x_B TOLL-like receptor 1, v 99.9 9.1E-21 3.1E-25 209.0 22.6 141 284-431 6-150 (520)
15 3t6q_A CD180 antigen; protein- 99.9 1.3E-20 4.3E-25 212.0 24.0 166 286-462 20-191 (606)
16 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-21 1.5E-25 213.0 20.0 143 288-433 15-162 (549)
17 4eco_A Uncharacterized protein 99.9 2.8E-21 9.7E-26 217.5 17.9 314 341-684 198-569 (636)
18 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-20 4.4E-25 203.0 21.0 255 298-608 39-303 (457)
19 4ecn_A Leucine-rich repeat pro 99.9 9.4E-21 3.2E-25 217.0 20.9 330 293-671 481-841 (876)
20 3oja_B Anopheles plasmodium-re 99.9 6.7E-21 2.3E-25 213.2 17.6 303 300-668 50-356 (597)
21 3v47_A TOLL-like receptor 5B a 99.8 3.5E-20 1.2E-24 200.8 22.7 349 286-674 18-412 (455)
22 2id5_A Lingo-1, leucine rich r 99.8 4E-20 1.4E-24 201.5 23.0 306 287-668 20-331 (477)
23 2z63_A TOLL-like receptor 4, v 99.8 1.6E-20 5.4E-25 209.6 19.1 147 288-435 38-193 (570)
24 3rgz_A Protein brassinosteroid 99.8 2.3E-20 8E-25 215.0 21.0 343 298-682 197-563 (768)
25 3rgz_A Protein brassinosteroid 99.8 1.3E-20 4.5E-25 217.0 18.8 154 299-461 267-429 (768)
26 4fcg_A Uncharacterized protein 99.8 1.1E-20 3.8E-25 194.6 15.7 133 301-436 81-223 (328)
27 1o6v_A Internalin A; bacterial 99.8 7.6E-20 2.6E-24 198.4 23.0 310 287-668 77-386 (466)
28 1ziw_A TOLL-like receptor 3; i 99.8 1.8E-19 6.2E-24 205.4 26.8 169 286-463 12-184 (680)
29 3t6q_A CD180 antigen; protein- 99.8 1.5E-19 5E-24 203.3 25.3 344 297-682 125-525 (606)
30 3j0a_A TOLL-like receptor 5; m 99.8 2.5E-19 8.7E-24 208.5 27.3 346 284-675 10-398 (844)
31 3o6n_A APL1; leucine-rich repe 99.8 5.6E-20 1.9E-24 194.7 19.7 295 284-642 51-350 (390)
32 2z7x_B TOLL-like receptor 1, v 99.8 3.2E-19 1.1E-23 196.6 26.4 143 304-462 3-150 (520)
33 2z81_A CD282 antigen, TOLL-lik 99.8 3.5E-20 1.2E-24 205.8 18.4 168 289-464 37-210 (549)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-19 4.7E-24 201.3 22.5 143 282-431 35-181 (562)
35 3oja_B Anopheles plasmodium-re 99.8 5.8E-20 2E-24 205.6 19.5 295 284-642 57-356 (597)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.4E-19 2.5E-23 195.5 25.5 146 301-462 31-181 (562)
37 4fcg_A Uncharacterized protein 99.8 1.1E-19 3.9E-24 187.0 16.9 102 561-684 203-304 (328)
38 1ziw_A TOLL-like receptor 3; i 99.8 5.7E-19 2E-23 201.3 21.6 149 287-436 34-188 (680)
39 3bz5_A Internalin-J, INLJ; leu 99.8 7.6E-19 2.6E-23 189.1 19.2 301 323-690 40-340 (457)
40 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-18 1.3E-22 192.9 23.3 145 288-436 41-190 (635)
41 3v47_A TOLL-like receptor 5B a 99.8 1.1E-18 3.8E-23 188.9 16.4 336 304-683 13-397 (455)
42 2id5_A Lingo-1, leucine rich r 99.8 5.4E-18 1.9E-22 184.6 21.3 295 303-675 13-313 (477)
43 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-18 1.4E-22 176.0 18.6 289 301-668 33-331 (332)
44 2ft3_A Biglycan; proteoglycan, 99.8 8E-18 2.7E-22 173.9 20.5 278 287-642 42-331 (332)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-18 5.2E-23 177.5 13.0 134 301-436 50-192 (313)
46 1jl5_A Outer protein YOPM; leu 99.8 2E-17 6.8E-22 177.9 22.1 121 301-435 91-211 (454)
47 1xku_A Decorin; proteoglycan, 99.8 1.4E-17 4.7E-22 172.0 19.4 149 302-462 32-183 (330)
48 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-17 3.7E-22 185.5 19.0 265 302-678 41-305 (622)
49 1xku_A Decorin; proteoglycan, 99.7 4.7E-17 1.6E-21 168.0 20.9 284 287-667 40-329 (330)
50 1jl5_A Outer protein YOPM; leu 99.7 1.1E-16 3.6E-21 172.2 24.4 306 286-681 99-422 (454)
51 3j0a_A TOLL-like receptor 5; m 99.7 3E-17 1E-21 191.0 20.4 327 304-675 7-379 (844)
52 1ogq_A PGIP-2, polygalacturona 99.7 4.4E-18 1.5E-22 174.1 8.6 128 325-460 50-184 (313)
53 2z80_A TOLL-like receptor 2, v 99.7 2.8E-17 9.6E-22 171.4 14.4 165 287-462 40-210 (353)
54 3zyi_A Leucine-rich repeat-con 99.7 1.4E-16 4.7E-21 172.0 19.5 128 303-435 56-188 (452)
55 3zyj_A Leucine-rich repeat-con 99.7 1.4E-16 4.8E-21 171.3 19.4 121 303-428 45-169 (440)
56 4g8a_A TOLL-like receptor 4; l 99.7 4.5E-16 1.6E-20 175.8 22.0 129 283-412 57-189 (635)
57 3zyi_A Leucine-rich repeat-con 99.7 1.7E-16 5.9E-21 171.3 17.3 165 286-463 62-231 (452)
58 3zyj_A Leucine-rich repeat-con 99.7 1.7E-16 5.8E-21 170.7 17.2 165 286-463 51-220 (440)
59 2z66_A Variable lymphocyte rec 99.7 7.1E-17 2.4E-21 164.8 13.1 125 304-433 10-140 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.3E-15 4.4E-20 168.9 21.4 151 283-464 45-195 (622)
61 2z80_A TOLL-like receptor 2, v 99.7 2.8E-16 9.6E-21 163.8 15.0 171 286-464 60-236 (353)
62 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-15 3.7E-20 154.2 17.2 146 304-460 14-163 (285)
63 1ozn_A Reticulon 4 receptor; N 99.7 3.9E-16 1.3E-20 157.5 13.2 167 286-462 19-189 (285)
64 2z66_A Variable lymphocyte rec 99.7 5.1E-16 1.8E-20 158.4 14.0 163 287-462 16-187 (306)
65 2xwt_C Thyrotropin receptor; s 99.7 4.9E-16 1.7E-20 152.3 13.2 108 326-435 32-147 (239)
66 3o53_A Protein LRIM1, AGAP0063 99.7 8.4E-18 2.9E-22 172.4 0.3 145 304-463 13-157 (317)
67 2z62_A TOLL-like receptor 4, v 99.6 4.3E-15 1.5E-19 149.0 18.4 144 289-436 18-166 (276)
68 1h6u_A Internalin H; cell adhe 99.6 9.1E-15 3.1E-19 148.9 16.5 143 299-458 39-181 (308)
69 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-15 8.9E-20 153.8 12.1 246 327-679 12-260 (317)
70 1h6u_A Internalin H; cell adhe 99.6 7E-15 2.4E-19 149.8 15.1 125 323-462 39-163 (308)
71 2xwt_C Thyrotropin receptor; s 99.6 4.7E-15 1.6E-19 145.3 12.6 85 351-435 32-121 (239)
72 2o6q_A Variable lymphocyte rec 99.6 3E-14 1E-18 142.3 18.0 128 303-435 18-149 (270)
73 4ay9_X Follicle-stimulating ho 99.6 9.6E-15 3.3E-19 151.8 14.3 128 304-435 12-145 (350)
74 2o6q_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 141.8 17.8 146 286-435 24-173 (270)
75 2z62_A TOLL-like receptor 4, v 99.6 2.7E-14 9.1E-19 143.2 16.6 148 305-464 11-163 (276)
76 3ogk_B Coronatine-insensitive 99.6 2.7E-15 9.1E-20 168.1 8.8 332 299-668 162-524 (592)
77 1p9a_G Platelet glycoprotein I 99.6 3.6E-14 1.2E-18 143.0 16.2 151 299-462 8-160 (290)
78 1z7x_W Ribonuclease inhibitor; 99.6 4E-16 1.4E-20 169.0 1.7 338 299-668 26-409 (461)
79 1z7x_W Ribonuclease inhibitor; 99.5 3.1E-16 1.1E-20 169.9 -1.3 349 301-683 3-400 (461)
80 3oja_A Leucine-rich immune mol 99.5 2.4E-14 8.1E-19 155.4 12.3 123 323-460 32-154 (487)
81 1wwl_A Monocyte differentiatio 99.5 2.6E-15 8.7E-20 153.5 3.8 242 301-600 43-305 (312)
82 3m19_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 135.5 16.1 167 286-463 22-192 (251)
83 3oja_A Leucine-rich immune mol 99.5 3.7E-15 1.3E-19 161.7 4.9 236 299-599 32-270 (487)
84 2ast_B S-phase kinase-associat 99.5 1.1E-14 3.7E-19 150.7 7.4 80 350-429 70-152 (336)
85 1wwl_A Monocyte differentiatio 99.5 7.2E-15 2.4E-19 150.1 5.5 132 300-433 94-242 (312)
86 4ay9_X Follicle-stimulating ho 99.5 9.3E-14 3.2E-18 144.3 13.6 237 328-666 12-255 (350)
87 2p1m_B Transport inhibitor res 99.5 1.1E-14 3.7E-19 163.2 5.8 228 300-540 104-347 (594)
88 3ogk_B Coronatine-insensitive 99.5 1.1E-14 3.8E-19 163.0 5.4 323 302-668 139-499 (592)
89 3e6j_A Variable lymphocyte rec 99.5 5.1E-13 1.8E-17 129.6 15.2 130 301-432 40-172 (229)
90 3rfs_A Internalin B, repeat mo 99.5 6.3E-13 2.2E-17 132.7 16.1 152 299-463 39-194 (272)
91 1p9a_G Platelet glycoprotein I 99.5 3.8E-13 1.3E-17 135.5 14.5 168 286-466 18-188 (290)
92 4ezg_A Putative uncharacterize 99.5 3.6E-13 1.2E-17 127.4 13.0 150 298-462 41-193 (197)
93 1h6t_A Internalin B; cell adhe 99.5 6.2E-13 2.1E-17 134.0 15.4 149 299-464 44-192 (291)
94 2ast_B S-phase kinase-associat 99.5 2.4E-14 8.2E-19 148.0 4.6 128 301-430 70-206 (336)
95 2v9t_B SLIT homolog 2 protein 99.5 7.5E-13 2.6E-17 127.5 14.7 129 301-431 32-164 (220)
96 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 128.8 16.5 151 301-463 14-168 (251)
97 2p1m_B Transport inhibitor res 99.4 5.8E-14 2E-18 157.2 7.2 153 299-460 154-324 (594)
98 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 127.1 14.3 149 303-463 21-172 (229)
99 3rfs_A Internalin B, repeat mo 99.4 2.1E-12 7.1E-17 129.0 16.3 162 289-462 52-217 (272)
100 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.2E-17 125.3 14.4 148 304-463 14-166 (220)
101 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.8E-17 135.3 15.4 168 285-462 25-201 (361)
102 1h6t_A Internalin B; cell adhe 99.4 2.7E-12 9.1E-17 129.4 16.3 160 287-464 55-214 (291)
103 2o6s_A Variable lymphocyte rec 99.4 4.5E-12 1.5E-16 121.0 16.6 141 289-433 18-162 (208)
104 4glp_A Monocyte differentiatio 99.4 7.5E-13 2.6E-17 135.0 11.6 133 302-434 92-239 (310)
105 2v70_A SLIT-2, SLIT homolog 2 99.4 1.9E-12 6.3E-17 124.7 13.4 146 285-433 18-167 (220)
106 2v9t_B SLIT homolog 2 protein 99.4 1.9E-12 6.5E-17 124.6 13.1 148 304-463 14-165 (220)
107 4ezg_A Putative uncharacterize 99.4 1.7E-12 6E-17 122.7 12.1 142 286-432 52-194 (197)
108 1m9s_A Internalin B; cell inva 99.4 2.9E-12 9.8E-17 141.9 14.8 149 299-464 41-189 (605)
109 1xeu_A Internalin C; cellular 99.4 3.1E-12 1.1E-16 126.8 13.6 150 297-464 37-186 (263)
110 1m9s_A Internalin B; cell inva 99.4 1.1E-12 3.9E-17 145.1 11.2 125 323-462 41-165 (605)
111 2o6s_A Variable lymphocyte rec 99.3 1.4E-11 4.9E-16 117.5 15.1 146 304-461 10-159 (208)
112 2ell_A Acidic leucine-rich nuc 99.3 2.7E-12 9.2E-17 118.0 9.1 132 300-436 23-164 (168)
113 2ca6_A RAN GTPase-activating p 99.3 6.1E-13 2.1E-17 140.3 4.1 38 394-431 92-134 (386)
114 2ca6_A RAN GTPase-activating p 99.3 7.3E-13 2.5E-17 139.6 4.4 162 297-462 28-228 (386)
115 1xeu_A Internalin C; cellular 99.3 2.8E-12 9.6E-17 127.1 8.3 147 300-464 18-164 (263)
116 3cvr_A Invasion plasmid antige 99.3 2.7E-11 9.2E-16 132.6 15.9 134 302-463 60-193 (571)
117 1w8a_A SLIT protein; signaling 99.3 2.1E-11 7.3E-16 114.5 12.9 125 304-433 11-140 (192)
118 2wfh_A SLIT homolog 2 protein 99.3 3.6E-11 1.2E-15 112.9 14.0 124 304-433 13-140 (193)
119 3goz_A Leucine-rich repeat-con 99.3 1.5E-12 5.3E-17 135.8 4.2 131 301-433 22-181 (362)
120 2xot_A Amphoterin-induced prot 99.3 2.2E-11 7.6E-16 126.8 12.9 155 303-466 20-179 (361)
121 4glp_A Monocyte differentiatio 99.3 5.3E-12 1.8E-16 128.7 7.8 174 298-486 114-305 (310)
122 2ell_A Acidic leucine-rich nuc 99.2 2E-11 7E-16 112.0 10.0 135 323-464 22-161 (168)
123 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.8E-15 107.4 15.2 129 303-436 9-141 (177)
124 2je0_A Acidic leucine-rich nuc 99.2 1.5E-11 5E-16 110.5 7.8 121 301-426 17-147 (149)
125 2je0_A Acidic leucine-rich nuc 99.2 2.5E-11 8.4E-16 109.0 8.3 129 323-457 15-147 (149)
126 3goz_A Leucine-rich repeat-con 99.2 1E-11 3.6E-16 129.4 6.5 260 306-642 3-295 (362)
127 3cvr_A Invasion plasmid antige 99.2 1.7E-10 5.9E-15 126.2 15.1 117 301-435 80-196 (571)
128 4b8c_D Glucose-repressible alc 99.2 3.8E-11 1.3E-15 136.4 9.9 116 317-435 216-332 (727)
129 1a9n_A U2A', U2A'; complex (nu 99.2 8.9E-11 3E-15 108.6 10.4 134 323-464 17-154 (176)
130 4b8c_D Glucose-repressible alc 99.2 4.7E-11 1.6E-15 135.6 10.1 152 301-464 173-330 (727)
131 1a9n_A U2A', U2A'; complex (nu 99.1 5.5E-11 1.9E-15 110.0 7.2 128 300-432 18-153 (176)
132 1dce_A Protein (RAB geranylger 99.1 1.6E-10 5.3E-15 127.2 10.5 107 326-436 442-550 (567)
133 2wfh_A SLIT homolog 2 protein 99.1 4.7E-10 1.6E-14 105.3 11.7 125 327-463 12-139 (193)
134 1dce_A Protein (RAB geranylger 99.1 3E-10 1E-14 124.9 12.0 119 302-426 442-567 (567)
135 1w8a_A SLIT protein; signaling 99.1 8.5E-10 2.9E-14 103.5 12.0 122 285-409 15-139 (192)
136 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.2E-14 99.4 13.2 121 287-411 16-139 (177)
137 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 100.7 10.5 104 328-436 15-122 (174)
138 2r9u_A Variable lymphocyte rec 99.0 2E-09 6.8E-14 99.1 11.2 109 303-416 14-125 (174)
139 3g39_A Variable lymphocyte rec 98.9 6E-09 2E-13 95.5 12.7 105 327-436 11-119 (170)
140 1ds9_A Outer arm dynein; leuci 98.9 1E-11 3.5E-16 117.5 -6.1 148 303-456 25-180 (198)
141 3g39_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 96.0 11.6 106 303-413 11-119 (170)
142 1ds9_A Outer arm dynein; leuci 98.7 1.9E-10 6.5E-15 108.7 -5.0 129 326-464 24-154 (198)
143 3sb4_A Hypothetical leucine ri 98.6 7.7E-08 2.6E-12 98.6 10.3 80 300-381 48-156 (329)
144 2ifg_A High affinity nerve gro 98.6 1.4E-07 4.9E-12 97.4 10.6 104 329-435 12-119 (347)
145 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.5E-11 93.6 10.0 102 304-410 11-117 (347)
146 4fdw_A Leucine rich hypothetic 98.4 2.5E-06 8.5E-11 89.4 15.1 119 301-428 113-235 (401)
147 3sb4_A Hypothetical leucine ri 98.4 6.6E-07 2.2E-11 91.5 8.8 36 300-336 100-135 (329)
148 3un9_A NLR family member X1; l 98.3 1.1E-07 3.8E-12 98.7 0.2 160 301-464 72-253 (372)
149 4fdw_A Leucine rich hypothetic 98.2 2.4E-05 8.3E-10 81.9 16.4 120 323-457 111-233 (401)
150 2qen_A Walker-type ATPase; unk 98.1 3.3E-05 1.1E-09 79.4 13.9 197 47-272 128-348 (350)
151 1w5s_A Origin recognition comp 98.1 1.1E-05 3.8E-10 85.2 10.3 234 2-256 91-371 (412)
152 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.4E-11 77.0 4.2 90 532-647 62-155 (176)
153 3e4g_A ATP synthase subunit S, 98.0 2E-06 7E-11 77.6 3.4 89 566-672 62-154 (176)
154 3un9_A NLR family member X1; l 98.0 7.6E-07 2.6E-11 92.4 0.0 130 301-432 101-252 (372)
155 2fna_A Conserved hypothetical 97.9 7.5E-05 2.6E-09 76.9 12.5 197 47-271 137-355 (357)
156 4fs7_A Uncharacterized protein 97.7 0.00059 2E-08 71.3 15.2 79 562-664 295-373 (394)
157 2ra8_A Uncharacterized protein 97.5 7.8E-05 2.7E-09 76.6 5.9 60 372-431 251-319 (362)
158 4gt6_A Cell surface protein; l 97.2 0.0059 2E-07 63.6 16.2 119 303-426 66-189 (394)
159 3rw6_A Nuclear RNA export fact 97.2 0.00024 8.3E-09 69.1 5.1 78 347-425 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.2 0.00058 2E-08 66.4 7.2 79 323-403 168-258 (267)
161 1io0_A Tropomodulin; LRR prote 97.2 0.00015 5.2E-09 66.8 2.7 84 347-431 62-163 (185)
162 2ra8_A Uncharacterized protein 97.1 0.0017 5.8E-08 66.6 10.5 13 299-311 137-149 (362)
163 4fs7_A Uncharacterized protein 97.1 0.0027 9.4E-08 66.2 12.4 125 298-428 68-217 (394)
164 1io0_A Tropomodulin; LRR prote 97.1 0.00037 1.3E-08 64.2 4.9 116 345-464 31-165 (185)
165 2v1u_A Cell division control p 96.9 0.0035 1.2E-07 65.0 10.8 231 2-256 83-351 (387)
166 4h09_A Hypothetical leucine ri 96.8 0.012 4E-07 61.0 13.4 78 300-382 45-122 (379)
167 2qby_B CDC6 homolog 3, cell di 96.6 0.032 1.1E-06 57.7 15.1 226 2-256 86-339 (384)
168 1njg_A DNA polymerase III subu 96.6 0.0019 6.6E-08 62.0 5.3 102 46-150 125-231 (250)
169 1fnn_A CDC6P, cell division co 96.5 0.016 5.6E-07 60.0 12.5 235 2-257 78-352 (389)
170 2qby_A CDC6 homolog 1, cell di 96.0 0.039 1.3E-06 56.9 11.7 230 3-255 82-347 (386)
171 4gt6_A Cell surface protein; l 95.1 0.06 2E-06 55.9 9.2 108 315-428 255-366 (394)
172 1hqc_A RUVB; extended AAA-ATPa 95.0 0.034 1.2E-06 55.9 6.8 73 75-150 138-214 (324)
173 3rfe_A Platelet glycoprotein I 94.8 0.049 1.7E-06 46.4 6.4 53 305-361 12-66 (130)
174 4h09_A Hypothetical leucine ri 94.8 0.075 2.6E-06 54.8 9.0 120 301-426 217-340 (379)
175 2chg_A Replication factor C sm 94.2 0.038 1.3E-06 51.8 4.7 99 46-147 101-204 (226)
176 1sxj_B Activator 1 37 kDa subu 92.7 0.13 4.6E-06 51.3 6.1 97 45-144 105-206 (323)
177 3rfe_A Platelet glycoprotein I 92.4 0.26 8.9E-06 41.8 6.5 34 398-431 33-67 (130)
178 1iqp_A RFCS; clamp loader, ext 87.3 0.51 1.7E-05 47.1 5.0 101 46-149 109-214 (327)
179 2chq_A Replication factor C sm 83.3 2.8 9.6E-05 41.3 8.2 98 46-146 101-203 (319)
180 1jr3_A DNA polymerase III subu 82.6 1.1 3.9E-05 45.5 5.1 99 46-147 118-221 (373)
181 1d2n_A N-ethylmaleimide-sensit 82.3 13 0.00045 35.5 12.4 124 37-169 114-264 (272)
182 3te6_A Regulatory protein SIR3 79.5 6.2 0.00021 38.9 8.8 143 7-150 90-283 (318)
183 1pgv_A TMD-1, tropomodulin TMD 78.9 4 0.00014 37.0 6.7 34 396-429 98-136 (197)
184 3bos_A Putative DNA replicatio 72.7 1.2 4.2E-05 41.8 1.6 98 47-147 104-217 (242)
185 1pgv_A TMD-1, tropomodulin TMD 67.6 3.9 0.00013 37.1 3.7 82 348-430 68-168 (197)
186 1a5t_A Delta prime, HOLB; zinc 65.6 7.8 0.00027 38.6 5.9 103 35-145 92-203 (334)
187 3h4m_A Proteasome-activating n 59.4 14 0.00046 35.6 6.2 107 35-145 98-229 (285)
188 1sxj_E Activator 1 40 kDa subu 57.9 5.2 0.00018 40.2 2.9 98 47-147 134-237 (354)
189 1sxj_D Activator 1 41 kDa subu 54.8 13 0.00044 37.1 5.3 98 47-147 133-235 (353)
190 2z4s_A Chromosomal replication 54.7 4.7 0.00016 42.1 2.0 96 47-145 194-304 (440)
191 3eie_A Vacuolar protein sortin 52.7 55 0.0019 32.0 9.5 110 35-147 98-228 (322)
192 3d8b_A Fidgetin-like protein 1 49.9 52 0.0018 32.8 8.9 109 36-147 165-295 (357)
193 1xwi_A SKD1 protein; VPS4B, AA 49.5 65 0.0022 31.5 9.4 110 35-147 93-223 (322)
194 2lz0_A Uncharacterized protein 46.7 18 0.00062 28.5 3.8 48 312-361 7-54 (100)
195 2qp9_X Vacuolar protein sortin 46.3 70 0.0024 31.8 9.2 108 37-147 133-261 (355)
196 1jr3_D DNA polymerase III, del 44.5 38 0.0013 33.5 6.9 98 45-145 74-183 (343)
197 1sxj_A Activator 1 95 kDa subu 41.2 16 0.00054 39.0 3.5 96 46-146 147-252 (516)
198 2zan_A Vacuolar protein sortin 41.1 1.3E+02 0.0044 31.0 10.5 107 38-147 218-345 (444)
199 3pvs_A Replication-associated 39.2 1.1E+02 0.0039 31.5 9.7 101 45-146 104-214 (447)
200 3vfd_A Spastin; ATPase, microt 36.6 1.2E+02 0.0041 30.5 9.3 107 37-146 197-325 (389)
201 2qz4_A Paraplegin; AAA+, SPG7, 34.7 89 0.003 29.1 7.5 109 36-146 87-221 (262)
202 3uk6_A RUVB-like 2; hexameric 31.3 46 0.0016 33.2 5.0 45 98-145 256-301 (368)
203 1l8q_A Chromosomal replication 26.9 31 0.0011 33.8 2.7 90 48-142 99-203 (324)
204 2l82_A Designed protein OR32; 26.9 2.3E+02 0.0077 22.1 7.1 66 74-139 78-155 (162)
205 3syl_A Protein CBBX; photosynt 26.5 34 0.0012 33.2 2.9 68 47-116 130-219 (309)
206 3b9p_A CG5977-PA, isoform A; A 26.5 2.7E+02 0.0093 26.3 9.6 109 36-147 102-233 (297)
207 3u61_B DNA polymerase accessor 26.1 33 0.0011 33.6 2.7 96 47-144 105-213 (324)
208 1sxj_C Activator 1 40 kDa subu 21.2 1.1E+02 0.0038 30.0 5.6 94 47-143 110-208 (340)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-33 Score=311.07 Aligned_cols=258 Identities=18% Similarity=0.239 Sum_probs=196.4
Q ss_pred CEEEecCCC--CHHHHHHHHHHHhhhhhh-------ccchHHHHHHHHHHHHHhCC-eEEEEecCccCcCCcccccCCCC
Q 047027 1 IWVTVSQPL--DLFKLQTEIATALKQSLL-------ENEDKVRRAGRLLGMLKAKE-KFVLILDDTWEAFPLEEVGIPEP 70 (692)
Q Consensus 1 ~wv~vs~~~--~~~~l~~~i~~~l~~~~~-------~~~~~~~~~~~~~~~l~~~k-r~LlVlDdv~~~~~~~~l~~~~~ 70 (692)
+||+|++.+ ++.+++++|+++++.... +..+.......+.+.+ +++ ||||||||||+.+++ .+.
T Consensus 188 ~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~---- 261 (549)
T 2a5y_B 188 VWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWA---- 261 (549)
T ss_dssp EEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHH----
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-ccc----
Confidence 599999985 899999999999976421 1112233344555555 675 999999999998765 111
Q ss_pred CCCCCeEEEEEecchhhhcccc-cccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHH
Q 047027 71 NEENGCKLVITTRSHTVCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAA 148 (692)
Q Consensus 71 ~~~~gs~IivTTR~~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~ 148 (692)
..+||+||||||++.++..++ ....+ +++|+.+|||+||.+.++.... ++.+++++.+|+++|+|+||||+++|+
T Consensus 262 -~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~ 338 (549)
T 2a5y_B 262 -QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFK 338 (549)
T ss_dssp -HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred -ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHH
Confidence 127999999999999998775 44556 9999999999999999987632 357889999999999999999999999
Q ss_pred HhcCCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHh-----------HhcCCCCCCccCHHHH
Q 047027 149 SMSGEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFL-----------YCALYPEDFAIPKDEL 217 (692)
Q Consensus 149 ~L~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl-----------~la~fp~~~~i~~~~l 217 (692)
.|+.+ + |+.+ +.+....... ...++..++.+||+.|+ +++|.||+ |||+||+++.|+
T Consensus 339 ~l~~~-~---w~~~-~~l~~~l~~~--~~~~i~~~l~~Sy~~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~---- 406 (549)
T 2a5y_B 339 SCEPK-T---FEKM-AQLNNKLESR--GLVGVECITPYSYKSLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP---- 406 (549)
T ss_dssp TCCSS-S---HHHH-HHHHHHHHHH--CSSTTCCCSSSSSSSHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----
T ss_pred Hhccc-h---HHHH-HHhHHHhhcc--cHHHHHHHHhccccccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----
Confidence 99875 3 4433 3332221110 13568999999999999 89999999 999999999998
Q ss_pred HHHHHHc--CCcccchhhhhHHHhHHHHHHHHHhhccccccCC--CCEEEehHHHHHHHHHHhcCCC
Q 047027 218 IDYWIAE--GFIEEVKDVQAKYDRGHTILNRLVNCCLLESAED--GSCVKMHDLIRDMALRITSESP 280 (692)
Q Consensus 218 ~~~w~a~--~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mhdl~~~~~~~~~~~~~ 280 (692)
+..|+|+ ||+.........++.++ ++++|++++|++.... ...|+|||++|++++.++.+++
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 8899999 99986543445566776 9999999999998643 3679999999999998877653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=1.1e-27 Score=267.16 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=178.5
Q ss_pred CEEEecCCCCHHHHHHHHHHHhhhhh---hcc-------chH-HHHHHHHHHHH--HhCCeEEEEecCccCcCCcccccC
Q 047027 1 IWVTVSQPLDLFKLQTEIATALKQSL---LEN-------EDK-VRRAGRLLGML--KAKEKFVLILDDTWEAFPLEEVGI 67 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~~l~~~~---~~~-------~~~-~~~~~~~~~~l--~~~kr~LlVlDdv~~~~~~~~l~~ 67 (692)
+||+|++.++...++..|++.+.... ... ... ......+.+.+ ..+||+||||||||+.++|+.+.
T Consensus 185 ~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~- 263 (1221)
T 1vt4_I 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN- 263 (1221)
T ss_dssp EEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-
Confidence 59999999999899888888654321 100 011 12222333322 25799999999999998887752
Q ss_pred CCCCCCCCeEEEEEecchhhhcccccccee-ec------cCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCch
Q 047027 68 PEPNEENGCKLVITTRSHTVCRSMKCKQVV-VE------LLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLP 140 (692)
Q Consensus 68 ~~~~~~~gs~IivTTR~~~v~~~~~~~~~~-l~------~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 140 (692)
+||+||||||++.++..+.....+ ++ .|+.+|||+||++..... ..+++.++ |+|+|
T Consensus 264 ------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLP 327 (1221)
T 1vt4_I 264 ------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNP 327 (1221)
T ss_dssp ------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCH
T ss_pred ------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCH
Confidence 799999999999998755444345 77 899999999999985332 12233333 99999
Q ss_pred hHHHHHHHHhcCCc-CHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhh-hHHHhHhcCCCCCCccCHHHHH
Q 047027 141 LAIVTVAASMSGEE-EIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKL-QQCFLYCALYPEDFAIPKDELI 218 (692)
Q Consensus 141 lal~~~g~~L~~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~~fl~la~fp~~~~i~~~~l~ 218 (692)
|||+++|++|+++. +.++|+.. ...++..++.+||+.|+ ++. |.||++||+||+++.|++..++
T Consensus 328 LALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa 393 (1221)
T 1vt4_I 328 RRLSIIAESIRDGLATWDNWKHV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLS 393 (1221)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 99999999999863 67788752 13679999999999999 678 9999999999999999999999
Q ss_pred HHHHHcCCcccchhhhhHHHhHHHHHHHHHhhccccccCCCCEEEehHHHHHHH
Q 047027 219 DYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVKMHDLIRDMA 272 (692)
Q Consensus 219 ~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mhdl~~~~~ 272 (692)
.+|+++| . +.++.++++|++++|++.......|+|||++++++
T Consensus 394 ~LW~aeG---e--------edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 394 LIWFDVI---K--------SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHCSSC---S--------HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHhcCCC---H--------HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9998887 1 34778899999999999865557899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=1.3e-26 Score=283.09 Aligned_cols=252 Identities=23% Similarity=0.366 Sum_probs=195.8
Q ss_pred CEEEecCCCC--HHHHHHHHHHHhhhhhhc----cchHHHHHHHHHHHHHhCC--eEEEEecCccCcCCcccccCCCCCC
Q 047027 1 IWVTVSQPLD--LFKLQTEIATALKQSLLE----NEDKVRRAGRLLGMLKAKE--KFVLILDDTWEAFPLEEVGIPEPNE 72 (692)
Q Consensus 1 ~wv~vs~~~~--~~~l~~~i~~~l~~~~~~----~~~~~~~~~~~~~~l~~~k--r~LlVlDdv~~~~~~~~l~~~~~~~ 72 (692)
+||++++..+ ....++.++..+...... ..........+ +..+.++ |+||||||||+.++|..+
T Consensus 183 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~~LlvlDd~~~~~~~~~~------- 254 (1249)
T 3sfz_A 183 HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRL-RVLMLRKHPRSLLILDDVWDPWVLKAF------- 254 (1249)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHH-HHHTSSSSCSCEEEEESCCCHHHHTTT-------
T ss_pred EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHH-HHHHhccCCCEEEEEecCCCHHHHHhh-------
Confidence 4999998654 445567777777653221 12233333344 4444555 999999999999888765
Q ss_pred CCCeEEEEEecchhhhcc-cccccee-ecc-CChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHH
Q 047027 73 ENGCKLVITTRSHTVCRS-MKCKQVV-VEL-LSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAAS 149 (692)
Q Consensus 73 ~~gs~IivTTR~~~v~~~-~~~~~~~-l~~-l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~ 149 (692)
++||+||||||++.++.. .+....+ +.+ |+.+||++||...++... +.+.+.+++|+++|+|+||||+++|++
T Consensus 255 ~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~ 330 (1249)
T 3sfz_A 255 DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGAL 330 (1249)
T ss_dssp CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHH
Confidence 479999999999999854 3445555 875 999999999999986542 244567999999999999999999999
Q ss_pred hcCCcCHHHHHHHHHHHhhccccC-----CCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHc
Q 047027 150 MSGEEEIHEWRNALNELRGLVRSR-----NGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAE 224 (692)
Q Consensus 150 L~~~~~~~~w~~~~~~l~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~ 224 (692)
|+.+. ..|+..++.+....... .....++..++.+||+.|+ ++.|.||+|||+||+++.|++..++..|.++
T Consensus 331 l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 331 LRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 98754 46999988886544221 1223579999999999999 8999999999999999999999999999554
Q ss_pred CCcccchhhhhHHHhHHHHHHHHHhhccccccCCC--CEEEehHHHHHHHHHHhcCC
Q 047027 225 GFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDG--SCVKMHDLIRDMALRITSES 279 (692)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~--~~~~mhdl~~~~~~~~~~~~ 279 (692)
.+.++.++++|++++|++...++ ..|+||+++|++++....++
T Consensus 408 ------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 ------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 25678889999999999987544 36999999999999886654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=232.24 Aligned_cols=249 Identities=23% Similarity=0.330 Sum_probs=183.4
Q ss_pred CEEEecCCCCHHHHHHHHHH---Hhhhhh----hccchHHHHHHHHHHHHHhC-CeEEEEecCccCcCCcccccCCCCCC
Q 047027 1 IWVTVSQPLDLFKLQTEIAT---ALKQSL----LENEDKVRRAGRLLGMLKAK-EKFVLILDDTWEAFPLEEVGIPEPNE 72 (692)
Q Consensus 1 ~wv~vs~~~~~~~l~~~i~~---~l~~~~----~~~~~~~~~~~~~~~~l~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~ 72 (692)
+||+++.. +...++..+.. .++... ............+.+.+.+. +++||||||||+.++++.+
T Consensus 183 ~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l------- 254 (591)
T 1z6t_A 183 HWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF------- 254 (591)
T ss_dssp EEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------
T ss_pred EEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------
Confidence 59999876 44444444433 333110 11122333444444444322 7899999999997666543
Q ss_pred CCCeEEEEEecchhhhcccccccee---eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHH
Q 047027 73 ENGCKLVITTRSHTVCRSMKCKQVV---VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAAS 149 (692)
Q Consensus 73 ~~gs~IivTTR~~~v~~~~~~~~~~---l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~ 149 (692)
++|++||||||+..++..++...+. +++|+.+||++||...++... ....+.+.+|+++|+|+|+||..+|++
T Consensus 255 ~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~ 330 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGAL 330 (591)
T ss_dssp CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4789999999999998765432222 358999999999999987531 123467899999999999999999999
Q ss_pred hcCCcCHHHHHHHHHHHhhccccC-----CCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHc
Q 047027 150 MSGEEEIHEWRNALNELRGLVRSR-----NGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAE 224 (692)
Q Consensus 150 L~~~~~~~~w~~~~~~l~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~ 224 (692)
++.+ ...|+..++.+....... ......+..++..||+.|+ ++.|.||+++|+||+++.|+...+...|.++
T Consensus 331 l~~~--~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 331 LRDF--PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp HHHS--TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HhcC--chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 9875 346998888876543211 1223578999999999999 7899999999999999999999999999543
Q ss_pred CCcccchhhhhHHHhHHHHHHHHHhhccccccCCC--CEEEehHHHHHHHHHHh
Q 047027 225 GFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDG--SCVKMHDLIRDMALRIT 276 (692)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~--~~~~mhdl~~~~~~~~~ 276 (692)
.+.+..++++|++++|++...++ ..|+||+++++++....
T Consensus 408 ------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 ------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 13467789999999999865433 47999999999998773
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=4.9e-22 Score=223.57 Aligned_cols=353 Identities=17% Similarity=0.130 Sum_probs=230.9
Q ss_pred ecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc
Q 047027 285 KAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV 364 (692)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 364 (692)
-.+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|++++|.++.
T Consensus 18 c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 18 CMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp CTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred ccCCCcccCCCCC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccc
Confidence 3445567777643 4789999999999999888777799999999999997 666766566999999999999999997
Q ss_pred C-CccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCc--ccCccccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 365 L-PSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE--EVPEGMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 365 l-p~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
+ |..++++++|++|++++|......| .++++++|++|++++|.+. .+|..++++++|++|++++|.+..++..
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--- 171 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN--- 171 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT---
T ss_pred cChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh---
Confidence 7 7889999999999999965444343 6999999999999999887 5799999999999999999998877541
Q ss_pred hHHHhhhhhcccc----ceeEEecCccchhhhhh-----------------------cccCCCcceEEEeeccccccccc
Q 047027 441 TVEEAASLSDRLD----SFEGHFFKLKDFNIYVK-----------------------SADGRGSKDYCLWLSASGKRRFL 493 (692)
Q Consensus 441 ~~~~l~~L~~~L~----~L~~~~~~~~~~~~~~~-----------------------~~~~~~l~~l~l~~~~~~~~~~~ 493 (692)
.++.+. +|+ .+.+..+.+........ ......++.+.+...........
T Consensus 172 ---~~~~l~-~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 172 ---DLQFLR-ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp ---TTHHHH-HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ---hhhhhh-ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 233333 333 44444333332221111 11111222222222221111000
Q ss_pred cccc-----------------------ccccchhhhhcccceEEeecccccCCCCccccccccccceeccccchhhhhhc
Q 047027 494 THLI-----------------------PKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDV 550 (692)
Q Consensus 494 ~~~~-----------------------~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 550 (692)
.... ......+..+..++.+.+.++.+...+ .+..+++|+.|.+.+|..
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l------- 319 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL------- 319 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-------
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-------
Confidence 0000 000111445566667777766665443 455566777777777652
Q ss_pred CCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeecc
Q 047027 551 LPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTL 630 (692)
Q Consensus 551 ~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (692)
..+|.+ .++ +|++|++++|...... .+..+++|++|++++| .++.+.... .....+
T Consensus 320 ----~~lp~~-~l~-~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n-~l~~~~~~~-------------~~~~~~ 375 (606)
T 3vq2_A 320 ----KQFPTL-DLP-FLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN-ALSFSGCCS-------------YSDLGT 375 (606)
T ss_dssp ----SSCCCC-CCS-SCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS-CEEEEEECC-------------HHHHCC
T ss_pred ----cccccC-CCC-ccceeeccCCcCccch----hhccCCCCCEEECcCC-ccCCCcchh-------------hhhccC
Confidence 333444 666 7888888777555443 2345667888888874 443331100 123368
Q ss_pred CCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccC-CccccccC
Q 047027 631 PRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLS-LSLPLLDN 682 (692)
Q Consensus 631 ~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP-~~l~~L~~ 682 (692)
++|+.|+++++. +..++. ....+++|+.|++.+|.-....| ..+..+++
T Consensus 376 ~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 376 NSLRHLDLSFNG-AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp SCCCEEECCSCS-EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred CcccEeECCCCc-cccchh--hccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 899999999875 777764 67788999999999885444444 34444433
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=5.3e-23 Score=235.60 Aligned_cols=349 Identities=13% Similarity=0.145 Sum_probs=216.0
Q ss_pred ceeecCCcccccccccEEEeecCCccc------------------cCCCC-CCCCCCccEEEccCCCccCCCchhHhhcC
Q 047027 289 RLLKFPGEQEWEENLERVSLMRNNIEE------------------IPSNM-SPHCEILSTLLLQRNGLLQRIPECFFVHM 349 (692)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 349 (692)
.+..+|.....+++++.|++++|.+.. +|..+ +..+++|++|++++|.....+|..+ .++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCC
Confidence 344478778888999999999999987 88776 3478999999999998788888665 899
Q ss_pred CCCcEEEccCCC-Ccc--CCccccCCC-------CCcEEEccCCCCCcCCCc---ccccccCCEEecccCCCcccCcccc
Q 047027 350 HGLKVLNLSRTN-IEV--LPSSVSDLT-------NLRSLLLGMCGRLKRVPS---VAKLLALQYLDLEATGIEEVPEGME 416 (692)
Q Consensus 350 ~~L~~L~l~~~~-~~~--lp~~i~~l~-------~L~~L~l~~c~~~~~lp~---~~~l~~L~~L~l~~~~l~~lp~~i~ 416 (692)
++|++|++++|. ++. +|..++.+. +|++|++++|. +..+|. ++++++|++|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 999999999998 874 787776665 99999999865 447775 889999999999999988999 889
Q ss_pred CCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcc-ccceeEEecCccchhhhhhcccCCCcceEEEeeccccccccccc
Q 047027 417 MLENLSHLYLYLPLLKKFPAALRETVEEAASLSDR-LDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTH 495 (692)
Q Consensus 417 ~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~-L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 495 (692)
.+++|+.|++++|.+..+|. .+.++. + |+.|.+..+.+...+..........|+.+.+..+.+.+.. +.
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~-------~l~~l~-~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~- 662 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPE-------DFCAFT-DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG-RN- 662 (876)
T ss_dssp TTSEESEEECCSSCCSCCCT-------TSCEEC-TTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS-SS-
T ss_pred CCCcceEEECcCCccccchH-------HHhhcc-ccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc-cc-
Confidence 99999999999999988886 578888 7 9999888777765543333222333666666544432210 00
Q ss_pred ccccccchhhhhcccceEEeecccccCCCCc-cccccccccceeccccchhhhhhcCCcccCC-cccccccCceeEEEEe
Q 047027 496 LIPKNYTHLEKLYKHKSVCLFACKICEREEP-IVLPEDVQFLQMNRVHDVASLNDVLPREQGL-VNIGKFSHDLKVIRFI 573 (692)
Q Consensus 496 ~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~l~~l~~~L~~L~l~ 573 (692)
.+.....+ .+..++.+.|+++.+...+.. ...+++|+.|+++++... .+.... +... +....++ +|+.|+|+
T Consensus 663 -l~~~l~~~-~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~--~~~~~~~l~nl~-~L~~L~Ls 736 (876)
T 4ecn_A 663 -ISCSMDDY-KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS--LKPKDGNYKNTY-LLTTIDLR 736 (876)
T ss_dssp -CSSCTTTC-CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS--SSCTTSCCTTGG-GCCEEECC
T ss_pred -chhhhccc-cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH--hccccccccccC-CccEEECC
Confidence 00000000 122456666666665543322 224566666666665321 111000 0000 0122344 66666666
Q ss_pred ccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC------Cccee
Q 047027 574 YCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP------EFKSV 647 (692)
Q Consensus 574 ~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~L~~~ 647 (692)
+| .++.+|..-....+++|+.|++++| .++.++ .....+++|+.|.+++++ -...+
T Consensus 737 ~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp----------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 737 FN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP----------------TQPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp SS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCC----------------CGGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred CC-CCccchHHhhhccCCCcCEEEeCCC-CCCccc----------------hhhhcCCCCCEEECCCCCCcccccccccC
Confidence 64 3344432110125566666666663 444332 122245555555554422 12233
Q ss_pred ccCCceeecCCcceEEEcCCCCccccCCcc
Q 047027 648 CSNNGVLVCNSLQEIKVYGCPKLKRLSLSL 677 (692)
Q Consensus 648 ~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l 677 (692)
|. .+..+++|+.|++++|.- ..+|..+
T Consensus 799 p~--~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 799 PT--GITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp CT--TGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred hH--HHhcCCCCCEEECCCCCC-CccCHhh
Confidence 32 444555555555555533 5555543
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.4e-21 Score=203.63 Aligned_cols=301 Identities=15% Similarity=0.181 Sum_probs=141.9
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
+++++|+++++.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccchh--hhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 445555555555544432 2245555555555553 344443 345555555555555554443 3455555555555
Q ss_pred cCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEec
Q 047027 381 GMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFF 460 (692)
Q Consensus 381 ~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~ 460 (692)
++| .+..+|.+.++++|++|++++|.....+..+..+++|++|+++++.+..++. +..++ +|+.|.+..+
T Consensus 118 ~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~~l~-~L~~L~l~~n 187 (347)
T 4fmz_A 118 NED-NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--------IANLT-DLYSLSLNYN 187 (347)
T ss_dssp TTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--------GGGCT-TCSEEECTTS
T ss_pred cCC-cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--------hccCC-CCCEEEccCC
Confidence 543 2333444455555555555555222222234555555555555555444431 44444 4555544433
Q ss_pred CccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceecc
Q 047027 461 KLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNR 540 (692)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~ 540 (692)
.+..... ......++.+.+..+.... ...+..+..++.+.+.++.+..... +..+++|+.|++.+
T Consensus 188 ~l~~~~~---~~~l~~L~~L~l~~n~l~~-----------~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 188 QIEDISP---LASLTSLHYFTAYVNQITD-----------ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ccccccc---ccCCCccceeecccCCCCC-----------CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCC
Confidence 3322211 1111122222221111110 0013344445666666665544333 45556666666666
Q ss_pred ccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhc
Q 047027 541 VHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELA 620 (692)
Q Consensus 541 ~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~ 620 (692)
+.. ..++.+..++ +|++|++++| .++.++ .+..+++|+.|++++| .++....
T Consensus 253 n~l-----------~~~~~~~~l~-~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~L~~n-~l~~~~~----------- 304 (347)
T 4fmz_A 253 NQI-----------SDINAVKDLT-KLKMLNVGSN-QISDIS---VLNNLSQLNSLFLNNN-QLGNEDM----------- 304 (347)
T ss_dssp SCC-----------CCCGGGTTCT-TCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCGGGH-----------
T ss_pred Ccc-----------CCChhHhcCC-CcCEEEccCC-ccCCCh---hhcCCCCCCEEECcCC-cCCCcCh-----------
Confidence 532 2233455566 6777777665 344432 3455666677777665 3332211
Q ss_pred ccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 621 TNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 621 ~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
.....+++|+.|.+++++ +..++. ...+++|+.|++.+|+
T Consensus 305 ----~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 305 ----EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp ----HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ----hHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 112246667777776664 444432 4456666666666654
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=2.1e-21 Score=202.28 Aligned_cols=297 Identities=16% Similarity=0.180 Sum_probs=225.5
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEe
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLD 402 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~ 402 (692)
.+++++.|++.++. +..++. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+|.++++++|++|+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEE
T ss_pred hcccccEEEEeCCc-cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEE
Confidence 67889999999996 677765 5889999999999999998876 999999999999996 677788899999999999
Q ss_pred cccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEE
Q 047027 403 LEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCL 482 (692)
Q Consensus 403 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l 482 (692)
+++|.+..+|. +..+++|++|++++|.....+. .+..+. +|+.|.+..+....... ......++.+.+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-------~~~~l~-~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l 184 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-------PLSNMT-GLNYLTVTESKVKDVTP---IANLTDLYSLSL 184 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-------GGTTCT-TCCEEECCSSCCCCCGG---GGGCTTCSEEEC
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCccccc-------chhhCC-CCcEEEecCCCcCCchh---hccCCCCCEEEc
Confidence 99999998887 8999999999999884433332 478888 99999988776665443 234456777776
Q ss_pred eecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceeccccchhhhhhcCCcccCCccccc
Q 047027 483 WLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGK 562 (692)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~ 562 (692)
..+.... ...+..+..++.+.+..+.+..... +..+++|+.|++.++.. ..++.+..
T Consensus 185 ~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l-----------~~~~~~~~ 241 (347)
T 4fmz_A 185 NYNQIED-----------ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKI-----------TDLSPLAN 241 (347)
T ss_dssp TTSCCCC-----------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-----------CCCGGGTT
T ss_pred cCCcccc-----------cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCcc-----------CCCcchhc
Confidence 5443321 1125667778899998887766544 67788999999988753 34444777
Q ss_pred ccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 563 FSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 563 l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
++ +|++|++++| .++.+ ..+..+++|++|++++| .++.++ ....+++|+.|.+++|.
T Consensus 242 l~-~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~-----------------~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 242 LS-QLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSN-QISDIS-----------------VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CT-TCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSS-CCCCCG-----------------GGGGCTTCSEEECCSSC
T ss_pred CC-CCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCC-ccCCCh-----------------hhcCCCCCCEEECcCCc
Confidence 88 9999999997 45554 34677889999999996 566553 23368999999999996
Q ss_pred CcceeccCCceeecCCcceEEEcCCCCccccCC--ccccccCCCC
Q 047027 643 EFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSL--SLPLLDNGQP 685 (692)
Q Consensus 643 ~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~--~l~~L~~l~~ 685 (692)
+..... .....+++|+.|++++|+ +..+|. .+++|+.+..
T Consensus 299 -l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l 340 (347)
T 4fmz_A 299 -LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADF 340 (347)
T ss_dssp -CCGGGH-HHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESS
T ss_pred -CCCcCh-hHhhccccCCEEEccCCc-cccccChhhhhccceeeh
Confidence 443322 146678999999999997 555544 3344444433
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4e-22 Score=224.39 Aligned_cols=160 Identities=16% Similarity=0.235 Sum_probs=76.6
Q ss_pred cCCcccccccccEEEeecCCccc------------------cCCCCC-CCCCCccEEEccCCCccCCCchhHhhcCCCCc
Q 047027 293 FPGEQEWEENLERVSLMRNNIEE------------------IPSNMS-PHCEILSTLLLQRNGLLQRIPECFFVHMHGLK 353 (692)
Q Consensus 293 ~~~~~~~~~~l~~l~l~~~~~~~------------------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 353 (692)
+|.....++++++|++++|.+.. +|..+. ..+++|++|++++|.....+|..+ .++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCC
Confidence 44444444555555555555544 444431 144555555555554444444433 4555555
Q ss_pred EEEccCCC-Ccc--CCccccCC------CCCcEEEccCCCCCcCCCc---ccccccCCEEecccCCCc-ccCccccCCCC
Q 047027 354 VLNLSRTN-IEV--LPSSVSDL------TNLRSLLLGMCGRLKRVPS---VAKLLALQYLDLEATGIE-EVPEGMEMLEN 420 (692)
Q Consensus 354 ~L~l~~~~-~~~--lp~~i~~l------~~L~~L~l~~c~~~~~lp~---~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~ 420 (692)
+|++++|. ++. +|..++.+ ++|++|++++|. +..+|. ++++++|++|++++|.+. .+| .++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 55555554 442 44444443 455555555432 224442 445555555555555554 455 4445555
Q ss_pred CCEEEccCCCCCCCChhHHhhHHHhhhhhcc-ccceeEEecCcc
Q 047027 421 LSHLYLYLPLLKKFPAALRETVEEAASLSDR-LDSFEGHFFKLK 463 (692)
Q Consensus 421 L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~-L~~L~~~~~~~~ 463 (692)
|++|++++|.+..+|. .+..+. + |+.|.+..+.+.
T Consensus 355 L~~L~L~~N~l~~lp~-------~l~~l~-~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 355 LASLNLAYNQITEIPA-------NFCGFT-EQVENLSFAHNKLK 390 (636)
T ss_dssp ESEEECCSSEEEECCT-------TSEEEC-TTCCEEECCSSCCS
T ss_pred CCEEECCCCccccccH-------hhhhhc-ccCcEEEccCCcCc
Confidence 5555555554444443 344444 4 555544444333
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.2e-21 Score=207.70 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=201.6
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRS 377 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 377 (692)
.+.+++++++.++.+..+|...+..+++|++|++++|. +..++...+..+++|++|++++|.++.+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35788999999999999988877789999999999997 67777656689999999999999998775 45889999999
Q ss_pred EEccCCCCCcCCC-c-ccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccc
Q 047027 378 LLLGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDS 454 (692)
Q Consensus 378 L~l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~ 454 (692)
|++++| .+..+| . ++++++|++|++++|.+..++. .++.+++|++|++++|.+..++ ++.+. +|+.
T Consensus 122 L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~-~L~~ 190 (390)
T 3o6n_A 122 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIP-SLFH 190 (390)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GGGCT-TCSE
T ss_pred EECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------ccccc-ccce
Confidence 999985 566777 4 6899999999999999887764 5889999999999999888665 45666 7888
Q ss_pred eeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccc
Q 047027 455 FEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQ 534 (692)
Q Consensus 455 L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~ 534 (692)
+.+..+.+.... ....++.+.+.-+.+..... .....++.+.+.++.+.+. ..+..+++|+
T Consensus 191 L~l~~n~l~~~~------~~~~L~~L~l~~n~l~~~~~------------~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~ 251 (390)
T 3o6n_A 191 ANVSYNLLSTLA------IPIAVEELDASHNSINVVRG------------PVNVELTILKLQHNNLTDT-AWLLNYPGLV 251 (390)
T ss_dssp EECCSSCCSEEE------CCSSCSEEECCSSCCCEEEC------------CCCSSCCEEECCSSCCCCC-GGGGGCTTCS
T ss_pred eecccccccccC------CCCcceEEECCCCeeeeccc------------cccccccEEECCCCCCccc-HHHcCCCCcc
Confidence 777655444321 11234444433222211100 0113356666666665543 3455566677
Q ss_pred cceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcch
Q 047027 535 FLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEE 614 (692)
Q Consensus 535 ~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~ 614 (692)
.|+++++.... .....+..++ +|++|++++| .++.++.. ...+++|++|++++| .++.++.
T Consensus 252 ~L~Ls~n~l~~---------~~~~~~~~l~-~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~----- 312 (390)
T 3o6n_A 252 EVDLSYNELEK---------IMYHPFVKMQ-RLERLYISNN-RLVALNLY--GQPIPTLKVLDLSHN-HLLHVER----- 312 (390)
T ss_dssp EEECCSSCCCE---------EESGGGTTCS-SCCEEECCSS-CCCEEECS--SSCCTTCCEEECCSS-CCCCCGG-----
T ss_pred EEECCCCcCCC---------cChhHccccc-cCCEEECCCC-cCcccCcc--cCCCCCCCEEECCCC-cceecCc-----
Confidence 77776654211 0011244556 7777777664 34444321 234567777777774 4544431
Q ss_pred hhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 615 TEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
....+++|+.|.+++++ +..++ ...+++|+.|++.+++
T Consensus 313 -----------~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 -----------NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -----------GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred -----------cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 12246677777777664 44442 3456677777777654
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.6e-20 Score=203.84 Aligned_cols=220 Identities=17% Similarity=0.216 Sum_probs=138.1
Q ss_pred ceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc
Q 047027 289 RLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS 368 (692)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 368 (692)
.+..++. ...++++++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.+|.
T Consensus 57 ~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 57 GIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 3344443 4556788888888888887765 4478888888888886 556655 4788888888888888887764
Q ss_pred ccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhh
Q 047027 369 VSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASL 448 (692)
Q Consensus 369 i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L 448 (692)
+..+++|++|++++| .+..+|.++++++|++|++.+ .+..++. ++++++|++|++++|.+..++ .+..+
T Consensus 130 ~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--------~l~~l 198 (466)
T 1o6v_A 130 LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSDIS--------VLAKL 198 (466)
T ss_dssp GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCCCG--------GGGGC
T ss_pred HcCCCCCCEEECCCC-ccCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCCCh--------hhccC
Confidence 788888888888875 455566677777777777753 3343433 667777777777777776654 35666
Q ss_pred hccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccc
Q 047027 449 SDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIV 528 (692)
Q Consensus 449 ~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~ 528 (692)
. +|+.|.+..+.+..... ......|+.+.+.-+.... ...+..+..++.+++.++.+.+... +.
T Consensus 199 ~-~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~l~~n~l~~~~~-~~ 262 (466)
T 1o6v_A 199 T-NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-----------IGTLASLTNLTDLDLANNQISNLAP-LS 262 (466)
T ss_dssp T-TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred C-CCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-----------chhhhcCCCCCEEECCCCccccchh-hh
Confidence 6 77777666555444322 1223445555554332221 1223445556666666655544332 44
Q ss_pred cccccccceecccc
Q 047027 529 LPEDVQFLQMNRVH 542 (692)
Q Consensus 529 ~~~~L~~L~l~~~~ 542 (692)
.+++|+.|.+.++.
T Consensus 263 ~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 263 GLTKLTELKLGANQ 276 (466)
T ss_dssp TCTTCSEEECCSSC
T ss_pred cCCCCCEEECCCCc
Confidence 45566666665543
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=7.2e-21 Score=214.01 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=103.4
Q ss_pred CcceeecCC-cccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 287 GLRLLKFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 287 ~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
+..+..++. ....++++++|++++|.+..++...+..+++|++|++++|. +..+++..|+++++|++|++++|.+..+
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 119 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASL 119 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccc
Confidence 333444433 45567788888888888888766666688888888888886 5555444458888888888888888877
Q ss_pred C-ccccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCCCcccC-ccccCCCCC----CEEEccCCCCCCCC
Q 047027 366 P-SSVSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATGIEEVP-EGMEMLENL----SHLYLYLPLLKKFP 435 (692)
Q Consensus 366 p-~~i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~~~lp 435 (692)
| ..++++.+|++|++++|.... .+| .++++++|++|++++|.+..++ ..++.+.+| ..|+++.|.+..+|
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeC
Confidence 5 668888888888888865433 467 6888888888888888777654 334444333 25555555554443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=210.64 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=130.2
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|++++|.++.+|
T Consensus 16 ~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 16 ELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccC
Confidence 44566677533 4679999999999998887777799999999999996 77777766799999999999999998775
Q ss_pred -ccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcc--cCccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 367 -SSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEE--VPEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 367 -~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
..++++.+|++|++++| .+..+| .++++++|++|++++|.+.. +|..++++++|++|++++|.+..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~----- 166 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC----- 166 (570)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG-----
T ss_pred HhhhcCcccccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH-----
Confidence 67999999999999996 566666 59999999999999998885 78999999999999999999987764
Q ss_pred HHHhhhhhccc
Q 047027 442 VEEAASLSDRL 452 (692)
Q Consensus 442 ~~~l~~L~~~L 452 (692)
..++.+. +|
T Consensus 167 -~~~~~l~-~L 175 (570)
T 2z63_A 167 -TDLRVLH-QM 175 (570)
T ss_dssp -GGGHHHH-TC
T ss_pred -HHccchh-cc
Confidence 1455555 55
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=9.1e-21 Score=208.98 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=110.0
Q ss_pred EecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 284 VKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
.-.+..+..+|.... +++++|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|++++|.++
T Consensus 6 ~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 6 DRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp ECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee
Confidence 334455666776443 789999999999888775445588999999999997 66665555689999999999999998
Q ss_pred cCCccccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCCCcccCccccCCCCC--CEEEccCCCC
Q 047027 364 VLPSSVSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENL--SHLYLYLPLL 431 (692)
Q Consensus 364 ~lp~~i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~ 431 (692)
.+|.. .+++|++|++++|.... .+| .++++++|++|++++|.+.. ..+..+++| +.|+++.|.+
T Consensus 83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 88876 88999999999865444 356 78999999999999998875 346667777 8888877766
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.3e-20 Score=212.02 Aligned_cols=166 Identities=20% Similarity=0.185 Sum_probs=131.1
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..++++|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|++++|.+..+
T Consensus 20 ~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCSSCCTTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcccCcCCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCccccc
Confidence 344556677543 4579999999999998877666799999999999997 5555555568999999999999999866
Q ss_pred -CccccCCCCCcEEEccCCCCCcCC-C-cccccccCCEEecccCCCcccC-ccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 366 -PSSVSDLTNLRSLLLGMCGRLKRV-P-SVAKLLALQYLDLEATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 366 -p~~i~~l~~L~~L~l~~c~~~~~l-p-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
|..++++++|++|++++|. +..+ | .++++++|++|++++|.+..++ ..+..+++|++|++++|.+..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 170 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK----- 170 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-----
T ss_pred ChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-----
Confidence 7789999999999999965 5555 4 7999999999999999998763 344459999999999999987764
Q ss_pred HHHhhhhhcccc--ceeEEecCc
Q 047027 442 VEEAASLSDRLD--SFEGHFFKL 462 (692)
Q Consensus 442 ~~~l~~L~~~L~--~L~~~~~~~ 462 (692)
..++.+. +|+ .|.+..+.+
T Consensus 171 -~~~~~l~-~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 171 -EDMSSLQ-QATNLSLNLNGNDI 191 (606)
T ss_dssp -HHHHTTT-TCCSEEEECTTCCC
T ss_pred -hhhhhhc-ccceeEEecCCCcc
Confidence 3567777 777 444443333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=4.5e-21 Score=213.00 Aligned_cols=143 Identities=22% Similarity=0.245 Sum_probs=89.1
Q ss_pred cceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc
Q 047027 288 LRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367 (692)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 367 (692)
..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|..+++|++|++++|.++.+|+
T Consensus 15 ~~l~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CccccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCH
Confidence 3445555533 2567777777777766654444567777777777775 444554445667777777777777766654
Q ss_pred c-ccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCC-CcccC-ccccCCCCCCEEEccCCCCCC
Q 047027 368 S-VSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATG-IEEVP-EGMEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 368 ~-i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~ 433 (692)
. ++++++|++|++++|.... ..| .++++++|++|++++|. +..+| ..++++++|++|++++|.+..
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 4 6677777777777653322 233 56677777777777765 55555 356667777777776666554
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.8e-21 Score=217.48 Aligned_cols=314 Identities=12% Similarity=0.136 Sum_probs=164.5
Q ss_pred CchhHhhcCCCCcEEEccCCCCcc------------------CCcccc--CCCCCcEEEccCCCCCcCCC-cccccccCC
Q 047027 341 IPECFFVHMHGLKVLNLSRTNIEV------------------LPSSVS--DLTNLRSLLLGMCGRLKRVP-SVAKLLALQ 399 (692)
Q Consensus 341 ~~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~ 399 (692)
+|..+ +++++|++|++++|.++. +|..++ ++++|++|++++|.....+| .++++++|+
T Consensus 198 ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 55543 677777777777777776 777777 77777777777776666777 677777777
Q ss_pred EEecccCC-Cc--ccCccccCC------CCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCcc-chhhhh
Q 047027 400 YLDLEATG-IE--EVPEGMEML------ENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLK-DFNIYV 469 (692)
Q Consensus 400 ~L~l~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~-~~~~~~ 469 (692)
+|++++|. ++ .+|.+++++ ++|++|++++|.+..+|. ...+++++ +|+.|.+..+.+. ..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-----~~~l~~l~-~L~~L~L~~N~l~g~ip--- 347 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-----ETSLQKMK-KLGMLECLYNQLEGKLP--- 347 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----HHHHTTCT-TCCEEECCSCCCEEECC---
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----hhhhccCC-CCCEEeCcCCcCccchh---
Confidence 77777776 66 377766665 777777777777776663 12356666 7777766655554 222
Q ss_pred hcccCCCcceEEEeecccccccccccccccccchhhhhcc-cceEEeecccccCCCCccccc--cccccceeccccchhh
Q 047027 470 KSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYK-HKSVCLFACKICEREEPIVLP--EDVQFLQMNRVHDVAS 546 (692)
Q Consensus 470 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-l~~l~L~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~ 546 (692)
.......|+.+.+.-+.+. . -...+..+.. ++.+++.++.+...+..+... ++|+.|++.++.....
T Consensus 348 ~~~~l~~L~~L~L~~N~l~--~--------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT--E--------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCEEEEEESEEECCSSEEE--E--------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hhCCCCCCCEEECCCCccc--c--------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 1111223444433322211 0 0012334555 666666666665444333332 2566666666543211
Q ss_pred hhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhh----------
Q 047027 547 LNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETE---------- 616 (692)
Q Consensus 547 ~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~---------- 616 (692)
+...+. +.....-.++ +|++|++++| .++.+| ...+..+++|++|+++++ .++.++........
T Consensus 418 ~p~~l~--~~~~~~~~~~-~L~~L~Ls~N-~l~~lp-~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 418 DGKNFD--PLDPTPFKGI-NVSSINLSNN-QISKFP-KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTCSSC--TTCSSCCCCC-CEEEEECCSS-CCCSCC-THHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCC
T ss_pred chhhhc--ccccccccCC-CCCEEECcCC-ccCcCC-HHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCcc
Confidence 110000 0000000333 5555555553 233332 222334455555555552 33333321100000
Q ss_pred ------hhhcccceeeee--ccCCcceeecCCCCCcceeccCCceeecCCcceEEEcC------CCCccccCCccccccC
Q 047027 617 ------KELATNTIVNTV--TLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYG------CPKLKRLSLSLPLLDN 682 (692)
Q Consensus 617 ------~~~~~~~~~~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~------C~~L~~lP~~l~~L~~ 682 (692)
..+. ..+.... .+++|+.|+++++. +..+|. ....+++|+.|++++ +.-...+|.++.++++
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS-FSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC-CSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCC-CCCcCh--hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 0000 0011222 56778888887763 555654 666778888888854 3334567776665555
Q ss_pred CC
Q 047027 683 GQ 684 (692)
Q Consensus 683 l~ 684 (692)
|+
T Consensus 568 L~ 569 (636)
T 4eco_A 568 LT 569 (636)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=1.3e-20 Score=202.96 Aligned_cols=255 Identities=15% Similarity=0.170 Sum_probs=175.9
Q ss_pred cccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcE
Q 047027 298 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRS 377 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 377 (692)
..++++++|+++++.+..+| .+ ..+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++.+++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l-~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GI-EKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TG-GGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccCh-hh-cccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 34678889999999888876 33 478899999999886 66665 478899999999999988875 888999999
Q ss_pred EEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCC-CCCCCChhHHhhHHHhhhhhcccccee
Q 047027 378 LLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLP-LLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 378 L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~-~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
|++++| .+..+| ++++++|++|++++|.++.+| ++++++|+.|+++.| .++.++ ++.+. +|+.|.
T Consensus 111 L~L~~N-~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---------~~~l~-~L~~L~ 176 (457)
T 3bz5_A 111 LNCDTN-KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---------VTPQT-QLTTLD 176 (457)
T ss_dssp EECCSS-CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---------CTTCT-TCCEEE
T ss_pred EECCCC-cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---------cccCC-cCCEEE
Confidence 999986 455565 888899999999999888875 788889999999887 444432 56677 888888
Q ss_pred EEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccc
Q 047027 457 GHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFL 536 (692)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L 536 (692)
+..+.+...+ ......++.+.+..+.+... .+..+..++.++++++.+.+.+ +..+++|+.|
T Consensus 177 ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L 238 (457)
T 3bz5_A 177 CSFNKITELD----VSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238 (457)
T ss_dssp CCSSCCCCCC----CTTCTTCCEEECCSSCCSCC------------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEE
T ss_pred CCCCccceec----cccCCCCCEEECcCCcCCee------------ccccCCCCCEEECcCCcccccC--ccccCCCCEE
Confidence 8776666543 22334466665544433221 1445566778888887776643 6667788888
Q ss_pred eeccccchhhhhhcCCcccCCccccccc---------CceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhh
Q 047027 537 QMNRVHDVASLNDVLPREQGLVNIGKFS---------HDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEI 607 (692)
Q Consensus 537 ~l~~~~~~~~~~~~~~~l~~l~~l~~l~---------~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l 607 (692)
++.++... +++ .+.++ .+|+.|++++|.....+| ...+++|+.|++++|..+..+
T Consensus 239 ~l~~N~l~-----------~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 239 DCSVNPLT-----------ELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp ECCSSCCS-----------CCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEE
T ss_pred EeeCCcCC-----------CcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCccccee
Confidence 88776421 111 22233 134455555554444442 235667888888887766665
Q ss_pred h
Q 047027 608 V 608 (692)
Q Consensus 608 ~ 608 (692)
+
T Consensus 303 ~ 303 (457)
T 3bz5_A 303 D 303 (457)
T ss_dssp E
T ss_pred c
Confidence 4
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=9.4e-21 Score=217.04 Aligned_cols=330 Identities=14% Similarity=0.115 Sum_probs=240.1
Q ss_pred cCCccc--ccccccEEEeecCCcc-ccCCCCCCCCCCccEEEccCCC-ccC-CCchhHhhcC-------CCCcEEEccCC
Q 047027 293 FPGEQE--WEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNG-LLQ-RIPECFFVHM-------HGLKVLNLSRT 360 (692)
Q Consensus 293 ~~~~~~--~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~l-------~~L~~L~l~~~ 360 (692)
+|.... .++++++|++++|.+. .+|..+ ..+++|+.|++++|. ... .+|..+ +.+ ++|++|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHH-HhhhhcccccCCccEEEeeCC
Confidence 787776 8899999999999865 677555 489999999999997 333 577765 555 49999999999
Q ss_pred CCccCCc--cccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCC-CCEEEccCCCCCCCChh
Q 047027 361 NIEVLPS--SVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLEN-LSHLYLYLPLLKKFPAA 437 (692)
Q Consensus 361 ~~~~lp~--~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~lp~~ 437 (692)
.++.+|. .++++++|++|++++|. +..+|.++++++|++|++++|.+..+|..++++++ |+.|++++|.+..+|.
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~- 636 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN- 636 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCS-
T ss_pred cCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCch-
Confidence 9999999 89999999999999965 55888999999999999999999999999999999 9999999999999986
Q ss_pred HHhhHHHhhhhh-ccccceeEEecCccchhh----hhhcccCCCcceEEEeecccccccccccccccccchhhhhcccce
Q 047027 438 LRETVEEAASLS-DRLDSFEGHFFKLKDFNI----YVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKS 512 (692)
Q Consensus 438 l~~~~~~l~~L~-~~L~~L~~~~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 512 (692)
.+..+. .+|+.|.+..+.+..... .........|+.+.+.-+.+.. .....+..+..++.
T Consensus 637 ------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~---------lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 637 ------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK---------FPTELFATGSPIST 701 (876)
T ss_dssp ------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS---------CCHHHHHTTCCCSE
T ss_pred ------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc---------cCHHHHccCCCCCE
Confidence 344443 038888887766644211 1111122346666655443321 12233456778999
Q ss_pred EEeecccccCCCCcccc--------ccccccceeccccchhhhhhcCCcccCCcc-cc--cccCceeEEEEeccCCcccc
Q 047027 513 VCLFACKICEREEPIVL--------PEDVQFLQMNRVHDVASLNDVLPREQGLVN-IG--KFSHDLKVIRFIYCGNLKNL 581 (692)
Q Consensus 513 l~L~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~--~l~~~L~~L~l~~c~~l~~l 581 (692)
+.|+++.+...+..... +++|+.|+++++.. ..+|. +. .++ +|+.|+|++| .++.+
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-----------~~lp~~l~~~~l~-~L~~L~Ls~N-~L~~l 768 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-----------TSLSDDFRATTLP-YLSNMDVSYN-CFSSF 768 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-----------CCCCGGGSTTTCT-TCCEEECCSS-CCSSC
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCCCC-----------ccchHHhhhccCC-CcCEEEeCCC-CCCcc
Confidence 99999888754443222 23899999998752 23444 43 788 9999999986 45556
Q ss_pred chhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcce
Q 047027 582 FSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQE 661 (692)
Q Consensus 582 ~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~ 661 (692)
|. .+.++++|+.|+++++..+..-.. ....+..+..+++|+.|.++++. +..+|. .. +++|+.
T Consensus 769 p~--~l~~L~~L~~L~Ls~N~~ls~N~l----------~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~--~l--~~~L~~ 831 (876)
T 4ecn_A 769 PT--QPLNSSQLKAFGIRHQRDAEGNRI----------LRQWPTGITTCPSLIQLQIGSND-IRKVDE--KL--TPQLYI 831 (876)
T ss_dssp CC--GGGGCTTCCEEECCCCBCTTCCBC----------CCCCCTTGGGCSSCCEEECCSSC-CCBCCS--CC--CSSSCE
T ss_pred ch--hhhcCCCCCEEECCCCCCcccccc----------cccChHHHhcCCCCCEEECCCCC-CCccCH--hh--cCCCCE
Confidence 43 356899999999987541111000 00011234468999999999985 588876 43 479999
Q ss_pred EEEcCCCCcc
Q 047027 662 IKVYGCPKLK 671 (692)
Q Consensus 662 L~i~~C~~L~ 671 (692)
|++++|+-..
T Consensus 832 LdLs~N~l~~ 841 (876)
T 4ecn_A 832 LDIADNPNIS 841 (876)
T ss_dssp EECCSCTTCE
T ss_pred EECCCCCCCc
Confidence 9999998443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.7e-21 Score=213.17 Aligned_cols=303 Identities=13% Similarity=0.110 Sum_probs=202.7
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSL 378 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L 378 (692)
+.+++.+++.++.+..+|..++..+++|++|++++|. +..+++..|..+++|++|+|++|.+..+|+ .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4678899999999888888777788999999999987 666666556889999999999999887755 46889999999
Q ss_pred EccCCCCCcCCC-c-ccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccce
Q 047027 379 LLGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSF 455 (692)
Q Consensus 379 ~l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L 455 (692)
++++| .+..+| . ++++++|++|++++|.+..++. .++.+++|++|++++|.+..++ ++.+. +|+.|
T Consensus 129 ~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~-~L~~L 197 (597)
T 3oja_B 129 VLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LSLIP-SLFHA 197 (597)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---------GGGCT-TCSEE
T ss_pred EeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---------hhhhh-hhhhh
Confidence 99986 566777 4 6899999999999998887664 5888999999999998887665 45566 77777
Q ss_pred eEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCcccccccccc
Q 047027 456 EGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQF 535 (692)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~ 535 (692)
.+..+.+.... ....+..+.+..+.+...... ....++.+.|.++.+.+. ..+..+++|+.
T Consensus 198 ~l~~n~l~~l~------~~~~L~~L~ls~n~l~~~~~~------------~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~ 258 (597)
T 3oja_B 198 NVSYNLLSTLA------IPIAVEELDASHNSINVVRGP------------VNVELTILKLQHNNLTDT-AWLLNYPGLVE 258 (597)
T ss_dssp ECCSSCCSEEE------CCTTCSEEECCSSCCCEEECS------------CCSCCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred hcccCcccccc------CCchhheeeccCCcccccccc------------cCCCCCEEECCCCCCCCC-hhhccCCCCCE
Confidence 77655444321 112344444433222111000 012366677776666542 34556677777
Q ss_pred ceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchh
Q 047027 536 LQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEET 615 (692)
Q Consensus 536 L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~ 615 (692)
|+++++.... .....++.++ +|+.|+|++| .++.++.. ...+++|+.|++++| .+..++.
T Consensus 259 L~Ls~N~l~~---------~~~~~~~~l~-~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~i~~------ 318 (597)
T 3oja_B 259 VDLSYNELEK---------IMYHPFVKMQ-RLERLYISNN-RLVALNLY--GQPIPTLKVLDLSHN-HLLHVER------ 318 (597)
T ss_dssp EECCSSCCCE---------EESGGGTTCS-SCCEEECTTS-CCCEEECS--SSCCTTCCEEECCSS-CCCCCGG------
T ss_pred EECCCCccCC---------CCHHHhcCcc-CCCEEECCCC-CCCCCCcc--cccCCCCcEEECCCC-CCCccCc------
Confidence 7777654211 0011255566 7777777774 44444332 244667777777774 4444431
Q ss_pred hhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 616 EKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 616 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
....+++|+.|+++++. +..++ ...+++|+.|++.+++
T Consensus 319 ----------~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 ----------NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp ----------GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred ----------ccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 22357777777777764 44442 4456777778777765
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=3.5e-20 Score=200.76 Aligned_cols=349 Identities=19% Similarity=0.151 Sum_probs=224.4
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
....+..+|. ..+++++|++++|.+..++...+..+++|++|++++|.....++...|..+++|++|++++|.+..+
T Consensus 18 ~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 18 INRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 3455666775 3478999999999999886666669999999999999755577666679999999999999999866
Q ss_pred -CccccCCCCCcEEEccCCCCCcCCC-c--ccccccCCEEecccCCCccc-Ccc-ccCCCCCCEEEccCCCCCCCChhHH
Q 047027 366 -PSSVSDLTNLRSLLLGMCGRLKRVP-S--VAKLLALQYLDLEATGIEEV-PEG-MEMLENLSHLYLYLPLLKKFPAALR 439 (692)
Q Consensus 366 -p~~i~~l~~L~~L~l~~c~~~~~lp-~--~~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~lp~~l~ 439 (692)
|..++++++|++|++++|......| . ++++++|++|++++|.+..+ |.. ++++++|++|++++|.+..++..
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-- 172 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-- 172 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT--
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh--
Confidence 7789999999999999976544444 4 89999999999999999877 554 78999999999999988766431
Q ss_pred hhHHHhhhh----------------------------------hccccceeEEecCccchhh--hhhcccCCCcceEEEe
Q 047027 440 ETVEEAASL----------------------------------SDRLDSFEGHFFKLKDFNI--YVKSADGRGSKDYCLW 483 (692)
Q Consensus 440 ~~~~~l~~L----------------------------------~~~L~~L~~~~~~~~~~~~--~~~~~~~~~l~~l~l~ 483 (692)
.+..+ . +|+.|++..+.+..... .........++.+.+.
T Consensus 173 ----~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 173 ----DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp ----TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ----hhhccccccccccccccCcccccchhhccccccccccccc-eeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 22222 2 34444433332221110 0011111223333222
Q ss_pred ecccccccc-cccccccccchhhh--hcccceEEeecccccCCC-CccccccccccceeccccchhhhhhcCCcccCCcc
Q 047027 484 LSASGKRRF-LTHLIPKNYTHLEK--LYKHKSVCLFACKICERE-EPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN 559 (692)
Q Consensus 484 ~~~~~~~~~-~~~~~~~~~~~l~~--l~~l~~l~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 559 (692)
......... ...........+.. ...++.+++.++.+.+.. ..+..+++|+.|++.++.... .....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~ 318 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK---------IDDNA 318 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---------ECTTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc---------cChhH
Confidence 111100000 00000011111112 235777777777665532 236667788888887765321 00112
Q ss_pred cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecC
Q 047027 560 IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFS 639 (692)
Q Consensus 560 l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 639 (692)
+..++ +|++|++++| .++.+++ ..+.++++|++|++++| .++.+... ....+++|+.|+++
T Consensus 319 ~~~l~-~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~---------------~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 319 FWGLT-HLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYN-HIRALGDQ---------------SFLGLPNLKELALD 379 (455)
T ss_dssp TTTCT-TCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSS-CCCEECTT---------------TTTTCTTCCEEECC
T ss_pred hcCcc-cCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCC-cccccChh---------------hccccccccEEECC
Confidence 55677 8888888886 4455533 34677888899998885 45544211 23357889999998
Q ss_pred CCCCcceeccCCceeecCCcceEEEcCCCCccccC
Q 047027 640 KLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLS 674 (692)
Q Consensus 640 ~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP 674 (692)
++ +++.++. +....+++|+.|++.+++--...|
T Consensus 380 ~N-~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TN-QLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SS-CCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CC-ccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 86 4777654 134568889999988765444443
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4e-20 Score=201.52 Aligned_cols=306 Identities=15% Similarity=0.205 Sum_probs=221.8
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|... ..+++.|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|++++|.++.+|
T Consensus 20 ~~~l~~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 20 RKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp SCCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCCcCcCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCccC
Confidence 44556667543 4688999999999998877667789999999999996 56664445689999999999999999887
Q ss_pred cc-ccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccC-ccccCCCCCCEEEccCCCCCCCChhHHhhHH
Q 047027 367 SS-VSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRETVE 443 (692)
Q Consensus 367 ~~-i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~ 443 (692)
.. +.++++|++|++++|......| .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+|. .
T Consensus 97 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~ 170 (477)
T 2id5_A 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT------E 170 (477)
T ss_dssp TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH------H
T ss_pred cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh------h
Confidence 64 6889999999999976555556 6899999999999999888664 578899999999999999988875 3
Q ss_pred HhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCC
Q 047027 444 EAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICER 523 (692)
Q Consensus 444 ~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~ 523 (692)
.+..+. +|+.|.+..+.+..... ..+..+..++.+++.++...+.
T Consensus 171 ~l~~l~-~L~~L~l~~n~i~~~~~----------------------------------~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 171 ALSHLH-GLIVLRLRHLNINAIRD----------------------------------YSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp HHTTCT-TCCEEEEESCCCCEECT----------------------------------TCSCSCTTCCEEEEECCTTCCE
T ss_pred HhcccC-CCcEEeCCCCcCcEeCh----------------------------------hhcccCcccceeeCCCCccccc
Confidence 477788 88888887655543221 1122344466666666544322
Q ss_pred CC-ccccccccccceeccccchhhhhhcCCcccCCcc--cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccc
Q 047027 524 EE-PIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN--IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEG 600 (692)
Q Consensus 524 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~--l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~ 600 (692)
.. ......+|+.|++.++.. ..++. +..++ +|+.|+|+++. ++.+++ ..+.++++|+.|++++
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l-----------~~~~~~~~~~l~-~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNL-----------TAVPYLAVRHLV-YLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVG 281 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCC-----------CSCCHHHHTTCT-TCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCS
T ss_pred cCcccccCccccEEECcCCcc-----------cccCHHHhcCcc-ccCeeECCCCc-CCccCh-hhccccccCCEEECCC
Confidence 11 122334788888887642 33442 56777 99999998864 555533 3467788999999998
Q ss_pred cccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 601 CDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 601 c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
+ .++.+... ....+++|+.|+++++ ++..++. ..+..+++|+.|++.+++
T Consensus 282 n-~l~~~~~~---------------~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 282 G-QLAVVEPY---------------AFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp S-CCSEECTT---------------TBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred C-ccceECHH---------------HhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 4 55554321 2336789999999987 5776654 235667899999998876
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=209.65 Aligned_cols=147 Identities=22% Similarity=0.238 Sum_probs=119.4
Q ss_pred cceeecC-CcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 288 LRLLKFP-GEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 288 ~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
..+..++ .....++++++|++++|.+..++...+..+++|++|++++|. +..+++..|..+++|++|++++|.++.+|
T Consensus 38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 38 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCC
Confidence 3344443 245667899999999999998887777789999999999997 66677666799999999999999999886
Q ss_pred c-cccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCCCcccC-ccccCCCCC----CEEEccCCCCCCCC
Q 047027 367 S-SVSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATGIEEVP-EGMEMLENL----SHLYLYLPLLKKFP 435 (692)
Q Consensus 367 ~-~i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~~~lp 435 (692)
. .++++.+|++|++++|.... .+| .++++++|++|++++|.+..++ ..++.+++| +.|+++.|.+..++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 5 68999999999999965443 467 7999999999999999988765 567777777 78888888776554
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=2.3e-20 Score=214.96 Aligned_cols=343 Identities=15% Similarity=0.056 Sum_probs=206.6
Q ss_pred cccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcE
Q 047027 298 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRS 377 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 377 (692)
..+.++++|++++|.+...++. +..+++|++|++++|.....+|.. +..+++|++|++++|.+....+.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL-PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC-CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc-ccCCCCE
Confidence 4567888889888888764444 458888999999888744455554 488888999999888877432222 7888888
Q ss_pred EEccCCCCCcCCC-ccccc-ccCCEEecccCCCc-ccCccccCCCCCCEEEccCCCCC-CCChhHHhhHHHhhhhhcccc
Q 047027 378 LLLGMCGRLKRVP-SVAKL-LALQYLDLEATGIE-EVPEGMEMLENLSHLYLYLPLLK-KFPAALRETVEEAASLSDRLD 453 (692)
Q Consensus 378 L~l~~c~~~~~lp-~~~~l-~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~l~~~~~~l~~L~~~L~ 453 (692)
|++++|.....+| .++.+ ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|. ..++++. +|+
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~------~~l~~l~-~L~ 346 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM------DTLLKMR-GLK 346 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH------HHHTTCT-TCC
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH------HHHhcCC-CCC
Confidence 8888876555777 56554 88888888888777 67778888888888888888775 6664 2367777 888
Q ss_pred ceeEEecCccc-hhhhhhcccCCCcceEEEeecccccccccc-----------------cccccccchhhhhcccceEEe
Q 047027 454 SFEGHFFKLKD-FNIYVKSADGRGSKDYCLWLSASGKRRFLT-----------------HLIPKNYTHLEKLYKHKSVCL 515 (692)
Q Consensus 454 ~L~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~l~~l~~l~L 515 (692)
.|.+..+.+.. .+..+... ...++.+.+.-+.+.+..... .........+..+..++.+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l-~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHH-TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhh-hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEEC
Confidence 88776655441 11111110 013444443322211100000 000001122334445555555
Q ss_pred ecccccCC-CCccccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCc
Q 047027 516 FACKICER-EEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNL 593 (692)
Q Consensus 516 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L 593 (692)
.++.+.+. +..+..+++|+.|.+.++... ..+|. +..++ +|++|++++|.....+|. .+.++++|
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~----------~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L 492 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLE----------GEIPQELMYVK-TLETLILDFNDLTGEIPS--GLSNCTNL 492 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCC----------SCCCGGGGGCT-TCCEEECCSSCCCSCCCG--GGGGCTTC
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCccc----------CcCCHHHcCCC-CceEEEecCCcccCcCCH--HHhcCCCC
Confidence 55555432 222444555555555554421 12222 45566 777777777543333322 35666777
Q ss_pred ceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCcccc
Q 047027 594 EVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRL 673 (692)
Q Consensus 594 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 673 (692)
++|++++|.-...++ .....+++|+.|+++++.-...+|. ....+++|+.|++.+|+-...+
T Consensus 493 ~~L~L~~N~l~~~~p----------------~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 493 NWISLSNNRLTGEIP----------------KWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp CEEECCSSCCCSCCC----------------GGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBC
T ss_pred CEEEccCCccCCcCC----------------hHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcC
Confidence 777777753222222 2233577888888888765556655 6677788888888888766677
Q ss_pred CCccccccC
Q 047027 674 SLSLPLLDN 682 (692)
Q Consensus 674 P~~l~~L~~ 682 (692)
|..+.....
T Consensus 555 p~~~~~~~~ 563 (768)
T 3rgz_A 555 PAAMFKQSG 563 (768)
T ss_dssp CGGGGTTTT
T ss_pred ChHHhcccc
Confidence 776655444
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.3e-20 Score=217.01 Aligned_cols=154 Identities=27% Similarity=0.336 Sum_probs=88.2
Q ss_pred ccccccEEEeecCCcc-ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCcc-ccCCCCC
Q 047027 299 WEENLERVSLMRNNIE-EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSS-VSDLTNL 375 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~-i~~l~~L 375 (692)
.++++++|++++|.+. .+|..++..+++|++|++++|.....+|..+ +.+++|++|++++|.+. .+|.. ++++++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 3456677777776665 5565555444667777777665434445443 66666666666666665 55554 6666666
Q ss_pred cEEEccCCCCCcCCC-cccccc-cCCEEecccCCCc-ccCccccC--CCCCCEEEccCCCCC-CCChhHHhhHHHhhhhh
Q 047027 376 RSLLLGMCGRLKRVP-SVAKLL-ALQYLDLEATGIE-EVPEGMEM--LENLSHLYLYLPLLK-KFPAALRETVEEAASLS 449 (692)
Q Consensus 376 ~~L~l~~c~~~~~lp-~~~~l~-~L~~L~l~~~~l~-~lp~~i~~--l~~L~~L~l~~~~~~-~lp~~l~~~~~~l~~L~ 449 (692)
++|++++|.....+| .++++. +|++|++++|.+. .+|..+.. +++|+.|++++|.+. .+|. .+.+++
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-------~l~~l~ 418 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-------TLSNCS 418 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-------GGGGCT
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-------HHhcCC
Confidence 666666654444555 555555 5666666666544 34444444 455555555555543 3343 345555
Q ss_pred ccccceeEEecC
Q 047027 450 DRLDSFEGHFFK 461 (692)
Q Consensus 450 ~~L~~L~~~~~~ 461 (692)
+|+.|.+..+.
T Consensus 419 -~L~~L~Ls~N~ 429 (768)
T 3rgz_A 419 -ELVSLHLSFNY 429 (768)
T ss_dssp -TCCEEECCSSE
T ss_pred -CCCEEECcCCc
Confidence 55555554433
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.1e-20 Score=194.59 Aligned_cols=133 Identities=28% Similarity=0.473 Sum_probs=118.5
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
.+++.|+++++.+..+|..++ .+++|++|++++|. +..+|..+ +.+++|++|++++|.++.+|..++++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 568899999999999998876 69999999999997 55888765 8999999999999999999999999999999999
Q ss_pred cCCCCCcCCC-cccc---------cccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCCh
Q 047027 381 GMCGRLKRVP-SVAK---------LLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 381 ~~c~~~~~lp-~~~~---------l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
++|+....+| .++. +++|++|++++|.++.+|..++++++|++|++++|.+..+|.
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~ 223 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch
Confidence 9999999998 6654 899999999999988999889999999999999888877764
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=7.6e-20 Score=198.40 Aligned_cols=310 Identities=17% Similarity=0.216 Sum_probs=239.1
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..++. ...+.++++|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.+..++
T Consensus 77 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 77 NNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp SSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEEEEEEEECCCG
T ss_pred CCccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC-CCCChH--HcCCCCCCEEECCCCccCCCh
Confidence 334445554 5667899999999999988776 4589999999999996 777765 589999999999999988876
Q ss_pred ccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhh
Q 047027 367 SSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAA 446 (692)
Q Consensus 367 ~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~ 446 (692)
.++.+.+|++|++++ .+..++.++++++|++|++++|.+..++ .+.++++|++|++++|.+..++. ++
T Consensus 151 -~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--------~~ 218 (466)
T 1o6v_A 151 -ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--------LG 218 (466)
T ss_dssp -GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--------GG
T ss_pred -hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--------cc
Confidence 589999999999963 4555567899999999999999988875 48899999999999998887763 66
Q ss_pred hhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCc
Q 047027 447 SLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEP 526 (692)
Q Consensus 447 ~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~ 526 (692)
.+. +|+.|.+..+.+..... ......|+.+.+..+...+. ..+..+..++.+.+.++.+.....
T Consensus 219 ~l~-~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~-----------~~~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 219 ILT-NLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISNL-----------APLSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp GCT-TCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCC-----------GGGTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccC-CCCEEECCCCCcccchh---hhcCCCCCEEECCCCccccc-----------hhhhcCCCCCEEECCCCccCcccc-
Confidence 788 89999888776665432 22345677777655443221 125667789999999988876544
Q ss_pred cccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchh
Q 047027 527 IVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEE 606 (692)
Q Consensus 527 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~ 606 (692)
+..+++|+.|++.++. +..++.+..++ +|+.|++++|. +...++ +..+++|+.|++++| .++.
T Consensus 283 ~~~l~~L~~L~L~~n~-----------l~~~~~~~~l~-~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~ 345 (466)
T 1o6v_A 283 LAGLTALTNLELNENQ-----------LEDISPISNLK-NLTYLTLYFNN-ISDISP---VSSLTKLQRLFFYNN-KVSD 345 (466)
T ss_dssp GTTCTTCSEEECCSSC-----------CSCCGGGGGCT-TCSEEECCSSC-CSCCGG---GGGCTTCCEEECCSS-CCCC
T ss_pred ccCCCccCeEEcCCCc-----------ccCchhhcCCC-CCCEEECcCCc-CCCchh---hccCccCCEeECCCC-ccCC
Confidence 6778999999998875 24455577888 99999999974 555544 567889999999996 5655
Q ss_pred hhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCC
Q 047027 607 IVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
++ ....+++|+.|.++++. +..++. ...+++|+.|.+.+|+
T Consensus 346 ~~-----------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 346 VS-----------------SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CG-----------------GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred ch-----------------hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 42 23368999999999985 555542 5678999999999885
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.8e-19 Score=205.44 Aligned_cols=169 Identities=22% Similarity=0.277 Sum_probs=135.5
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..++++|++++|.+..++...+..+++|++|++++|. +..+++..+.++++|++|++++|.++.+
T Consensus 12 s~~~L~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCSCS--CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcccccccc--CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCcc
Confidence 345566777644 3789999999999998888767789999999999997 6666666679999999999999999999
Q ss_pred Cc-cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 366 PS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 366 p~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
|. .++++.+|++|++++|. +..+| .++++++|++|++++|.+..+ |..++++++|++|+++.|.+..++..
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---- 163 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE---- 163 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH----
T ss_pred ChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH----
Confidence 86 59999999999999975 45555 699999999999999988855 45678999999999999999887751
Q ss_pred HHHhhhhhccccceeEEecCcc
Q 047027 442 VEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
......+. +|+.|.+..+.+.
T Consensus 164 ~~~~~~~~-~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 164 ELDIFANS-SLKKLELSSNQIK 184 (680)
T ss_dssp HHGGGTTC-EESEEECTTCCCC
T ss_pred Hhhccccc-cccEEECCCCccc
Confidence 11223446 7888877655443
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.5e-19 Score=203.31 Aligned_cols=344 Identities=17% Similarity=0.101 Sum_probs=182.5
Q ss_pred ccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCc--EEEccCCCCccCCccccCCC-
Q 047027 297 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLK--VLNLSRTNIEVLPSSVSDLT- 373 (692)
Q Consensus 297 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~lp~~i~~l~- 373 (692)
...++++++|++++|.+..++...+..+++|++|++++|. +..++...++.+++|+ .|++++|.+..+++......
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 3445667777777777665532222246777777777775 4555444456777777 67777777665543332222
Q ss_pred ---------------------------------------------------CCcEEEccCCCCCcCCC--cccccccCCE
Q 047027 374 ---------------------------------------------------NLRSLLLGMCGRLKRVP--SVAKLLALQY 400 (692)
Q Consensus 374 ---------------------------------------------------~L~~L~l~~c~~~~~lp--~~~~l~~L~~ 400 (692)
+|+.|++++| .+..++ .++++++|++
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCE
Confidence 3445555553 333444 3777888888
Q ss_pred EecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceE
Q 047027 401 LDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDY 480 (692)
Q Consensus 401 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l 480 (692)
|++++|.++.+|.+++++++|++|++++|.+..++. ..+..+. +|+.|.+..+................|+.+
T Consensus 283 L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ------ISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp EECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG------GCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred EeccCCccCCCChhhcccccCCEEECccCCcCcCch------hhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 888888888888888888888888888887776542 2456667 777777765443311111112223445555
Q ss_pred EEeecccccccccccccccccchhhhhcccceEEeecccccCCC-CccccccccccceeccccchhhhhhcCCcccCCcc
Q 047027 481 CLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICERE-EPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN 559 (692)
Q Consensus 481 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 559 (692)
.+..+...... .....+..+..++.+.+.++.+.... ..+..+++|+.|++.++..... ..-..
T Consensus 356 ~l~~n~l~~~~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~ 420 (606)
T 3t6q_A 356 DLSHDDIETSD-------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK--------DAQSP 420 (606)
T ss_dssp ECCSSCCCEEE-------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC--------TTCCT
T ss_pred ECCCCcccccc-------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc--------ccchh
Confidence 55433332111 00122445556667777666554332 2345566677777766543210 00011
Q ss_pred cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecC
Q 047027 560 IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFS 639 (692)
Q Consensus 560 l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 639 (692)
+..++ +|+.|++++|. +...++ ..+.++++|++|++++| .+....... ......+++|+.|+++
T Consensus 421 ~~~l~-~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~------------~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 421 FQNLH-LLKVLNLSHSL-LDISSE-QLFDGLPALQHLNLQGN-HFPKGNIQK------------TNSLQTLGRLEILVLS 484 (606)
T ss_dssp TTTCT-TCCEEECTTCC-CBTTCT-TTTTTCTTCCEEECTTC-BCGGGEECS------------SCGGGGCTTCCEEECT
T ss_pred hhCcc-cCCEEECCCCc-cCCcCH-HHHhCCCCCCEEECCCC-CCCcccccc------------chhhccCCCccEEECC
Confidence 44555 66666666653 222211 23455666666666664 232211000 0112245666666666
Q ss_pred CCCCcceeccCCceeecCCcceEEEcCCCCccccCCccccccC
Q 047027 640 KLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSLSLPLLDN 682 (692)
Q Consensus 640 ~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l~~L~~ 682 (692)
++. +..++. ..+..+++|+.|++++|.--...|..+.++++
T Consensus 485 ~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 485 FCD-LSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TSC-CCEECT-TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred CCc-cCccCh-hhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 653 443321 13445566666666665433334444444443
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=2.5e-19 Score=208.51 Aligned_cols=346 Identities=18% Similarity=0.139 Sum_probs=221.4
Q ss_pred EecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 284 VKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
.-....+..+|. ..+++++|++++|.+..++...+..+++|++|++++|.....+++..|.++++|++|+|++|.+.
T Consensus 10 dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 10 FYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 344556677775 46889999999999998876667799999999999997677776666799999999999999998
Q ss_pred cC-CccccCCCCCcEEEccCCCCCcCCC-c--ccccccCCEEecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChh
Q 047027 364 VL-PSSVSDLTNLRSLLLGMCGRLKRVP-S--VAKLLALQYLDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAA 437 (692)
Q Consensus 364 ~l-p~~i~~l~~L~~L~l~~c~~~~~lp-~--~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~ 437 (692)
.+ |..++++.+|++|++++|......| . ++++++|++|++++|.+..++ ..++++++|++|++++|.+..+..
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~- 165 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE- 165 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS-
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH-
Confidence 76 8889999999999999976555555 4 999999999999999988653 578999999999999998876542
Q ss_pred HHhhHHHhhhh--hccccceeEEecCccchhhhh-h----cccCCCcceEEEeeccccccc---cc--------------
Q 047027 438 LRETVEEAASL--SDRLDSFEGHFFKLKDFNIYV-K----SADGRGSKDYCLWLSASGKRR---FL-------------- 493 (692)
Q Consensus 438 l~~~~~~l~~L--~~~L~~L~~~~~~~~~~~~~~-~----~~~~~~l~~l~l~~~~~~~~~---~~-------------- 493 (692)
..+..+ . +|+.|.+..+.+....... . ......++.+.+..+...... +.
T Consensus 166 -----~~l~~l~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 166 -----HELEPLQGK-TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp -----GGGHHHHHC-SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred -----HHcccccCC-ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 134444 5 7888887665544311100 0 001112444443322111100 00
Q ss_pred ----------ccccccccchhhhh--cccceEEeecccccCCC-CccccccccccceeccccchhhhhhcCCcccCCccc
Q 047027 494 ----------THLIPKNYTHLEKL--YKHKSVCLFACKICERE-EPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNI 560 (692)
Q Consensus 494 ----------~~~~~~~~~~l~~l--~~l~~l~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l 560 (692)
..........+..+ ..++.+++.++.+.... ..+..+++|+.|++.++.... ..-..+
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---------~~~~~~ 310 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK---------IADEAF 310 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE---------ECTTTT
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC---------CChHHh
Confidence 00000111122222 34666777666554432 235566777777777654211 000124
Q ss_pred ccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCC
Q 047027 561 GKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSK 640 (692)
Q Consensus 561 ~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 640 (692)
..++ +|++|++++|. ++.+++ ..+..+++|+.|+++++ .+..++.. ....+++|+.|.+++
T Consensus 311 ~~l~-~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~---------------~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 311 YGLD-NLQVLNLSYNL-LGELYS-SNFYGLPKVAYIDLQKN-HIAIIQDQ---------------TFKFLEKLQTLDLRD 371 (844)
T ss_dssp TTCS-SCCEEEEESCC-CSCCCS-CSCSSCTTCCEEECCSC-CCCCCCSS---------------CSCSCCCCCEEEEET
T ss_pred cCCC-CCCEEECCCCC-CCccCH-HHhcCCCCCCEEECCCC-CCCccChh---------------hhcCCCCCCEEECCC
Confidence 5566 78888887753 344322 24566777888888774 45444321 233567777777776
Q ss_pred CCCcceeccCCceeecCCcceEEEcCCCCccccCC
Q 047027 641 LPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSL 675 (692)
Q Consensus 641 ~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~ 675 (692)
+. +..++ .+++|+.|.+.+| ++..+|.
T Consensus 372 N~-l~~i~------~~~~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 372 NA-LTTIH------FIPSIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp CC-SCCCS------SCCSCSEEEEESC-CCCCCCC
T ss_pred CC-CCccc------CCCCcchhccCCC-Ccccccc
Confidence 53 44332 2666777777665 3334444
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5.6e-20 Score=194.73 Aligned_cols=295 Identities=18% Similarity=0.152 Sum_probs=225.4
Q ss_pred EecCcceeecCCc-ccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCC
Q 047027 284 VKAGLRLLKFPGE-QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362 (692)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 362 (692)
...+..+..+|.. ...++++++|++++|.+..++...+..+++|++|++++|. +..+++..+..+++|++|++++|.+
T Consensus 51 ~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 129 (390)
T 3o6n_A 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 129 (390)
T ss_dssp EEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCcc
Confidence 3344556667765 3567899999999999999887667799999999999997 7777777679999999999999999
Q ss_pred ccCCcc-ccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 363 EVLPSS-VSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 363 ~~lp~~-i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
+.+|.. +.++++|++|++++|......| .++++++|++|++++|.++.++ ++.+++|++|+++.|.+..++
T Consensus 130 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~----- 202 (390)
T 3o6n_A 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----- 202 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEE-----
T ss_pred CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccC-----
Confidence 999877 4899999999999975444444 5999999999999999998875 678899999999999887433
Q ss_pred hHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccc
Q 047027 441 TVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKI 520 (692)
Q Consensus 441 ~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~ 520 (692)
... .|+.|.+..+.+..... .....++.+.+.-+.+.+ ...+..+..++.++++++.+
T Consensus 203 ------~~~-~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~-----------~~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 203 ------IPI-AVEELDASHNSINVVRG----PVNVELTILKLQHNNLTD-----------TAWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp ------CCS-SCSEEECCSSCCCEEEC----CCCSSCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCC
T ss_pred ------CCC-cceEEECCCCeeeeccc----cccccccEEECCCCCCcc-----------cHHHcCCCCccEEECCCCcC
Confidence 234 78888877666554422 122457777665544432 13466778899999999988
Q ss_pred cCC-CCccccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeec
Q 047027 521 CER-EEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKV 598 (692)
Q Consensus 521 ~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l 598 (692)
.+. +..+..+++|+.|.+.++.. ..++. ...++ +|++|++++| .++.+++ .+..+++|++|++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l-----------~~~~~~~~~l~-~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L 325 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRL-----------VALNLYGQPIP-TLKVLDLSHN-HLLHVER--NQPQFDRLENLYL 325 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCC-----------CEEECSSSCCT-TCCEEECCSS-CCCCCGG--GHHHHTTCSEEEC
T ss_pred CCcChhHccccccCCEEECCCCcC-----------cccCcccCCCC-CCCEEECCCC-cceecCc--cccccCcCCEEEC
Confidence 765 33477789999999998753 22222 35677 9999999997 5666643 3678999999999
Q ss_pred cccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 599 EGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 599 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
++| .++.++ ...+++|+.|++++++
T Consensus 326 ~~N-~i~~~~------------------~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 326 DHN-SIVTLK------------------LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSS-CCCCCC------------------CCTTCCCSEEECCSSC
T ss_pred CCC-ccceeC------------------chhhccCCEEEcCCCC
Confidence 995 565542 2368999999999875
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.2e-19 Score=196.58 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=123.0
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGM 382 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 382 (692)
++++++++.+..+|..+. +++++|++++|. +..+++..+..+++|++|++++|.++.+ |..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999999998765 899999999997 6777766679999999999999999977 77899999999999999
Q ss_pred CCCCcCCCcccccccCCEEecccCCCcc--cCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccc--cceeEE
Q 047027 383 CGRLKRVPSVAKLLALQYLDLEATGIEE--VPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRL--DSFEGH 458 (692)
Q Consensus 383 c~~~~~lp~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L--~~L~~~ 458 (692)
| .++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. ..+..++ +| +.|.+.
T Consensus 79 N-~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~-~L~L~~L~l~ 146 (520)
T 2z7x_B 79 N-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---------SSVLPIA-HLNISKVLLV 146 (520)
T ss_dssp S-CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---------GGGGGGT-TSCEEEEEEE
T ss_pred C-ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---------hhccccc-cceeeEEEee
Confidence 5 56788844 89999999999999885 67899999999999999998763 1466777 77 888887
Q ss_pred ecCc
Q 047027 459 FFKL 462 (692)
Q Consensus 459 ~~~~ 462 (692)
.+.+
T Consensus 147 ~n~l 150 (520)
T 2z7x_B 147 LGET 150 (520)
T ss_dssp ECTT
T ss_pred cccc
Confidence 7655
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.5e-20 Score=205.78 Aligned_cols=168 Identities=23% Similarity=0.267 Sum_probs=138.1
Q ss_pred ceeec-CCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc--C
Q 047027 289 RLLKF-PGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV--L 365 (692)
Q Consensus 289 ~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l 365 (692)
.+..+ +.....++++++|++++|.+..++...+..+++|++|++++|. +..+++..++.+++|++|++++|.++. .
T Consensus 37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccch
Confidence 34443 3456678899999999999998887666799999999999997 777777767999999999999999984 4
Q ss_pred CccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcc-cCccccCCCCCCEEEccCCCCCCCChhHHhhH
Q 047027 366 PSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEE-VPEGMEMLENLSHLYLYLPLLKKFPAALRETV 442 (692)
Q Consensus 366 p~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~ 442 (692)
|..++++++|++|++++|..+..+| .++++++|++|++++|.+.. .|..++.+++|++|++..+....+|..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~----- 190 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI----- 190 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH-----
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh-----
Confidence 6789999999999999987677777 69999999999999998884 778899999999999988887766642
Q ss_pred HHhhhhhccccceeEEecCccc
Q 047027 443 EEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 443 ~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
-...+. +|+.|.+..+.+..
T Consensus 191 -~~~~l~-~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 191 -FADILS-SVRYLELRDTNLAR 210 (549)
T ss_dssp -HHHSTT-TBSEEEEESCBCTT
T ss_pred -hHhhcc-cccEEEccCCcccc
Confidence 234566 78888777655543
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.4e-19 Score=201.34 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=109.5
Q ss_pred EEEecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 282 FMVKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
.+.-.+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..+++..|..+++|++|++++|.
T Consensus 35 ~l~ls~~~L~~ip~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCSCCTTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCccCCCCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc
Confidence 3444555667777644 3788999999999988876666689999999999996 666655556889999999999999
Q ss_pred CccCCccccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCCCcccCccccCCCCC--CEEEccCCCC
Q 047027 362 IEVLPSSVSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENL--SHLYLYLPLL 431 (692)
Q Consensus 362 ~~~lp~~i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~ 431 (692)
++.+|.. .+++|++|++++|.... ..| .++++++|++|++++|.+... .+..+++| ++|+++.|.+
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 9988876 88999999999865333 234 688999999999999887752 34555555 8888877765
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.8e-20 Score=205.57 Aligned_cols=295 Identities=18% Similarity=0.146 Sum_probs=226.0
Q ss_pred EecCcceeecCCc-ccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCC
Q 047027 284 VKAGLRLLKFPGE-QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362 (692)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 362 (692)
...+..+..+|.. ...+++++.|++++|.+..++...+..+++|++|++++|. +..+|+..|+.+++|++|++++|.+
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 135 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDL 135 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCCC
Confidence 3444555666654 3456899999999999998887667799999999999997 7778877779999999999999999
Q ss_pred ccCCcc-ccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 363 EVLPSS-VSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 363 ~~lp~~-i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
+.+|.. ++++++|++|++++|......| .++++++|++|++++|.+..++ ++.+++|++|++++|.+..++
T Consensus 136 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~----- 208 (597)
T 3oja_B 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLA----- 208 (597)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEE-----
T ss_pred CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccccc-----
Confidence 999877 5899999999999976555555 6999999999999999998875 677899999999999887433
Q ss_pred hHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccc
Q 047027 441 TVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKI 520 (692)
Q Consensus 441 ~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~ 520 (692)
... .|+.|.+..+.+...... ....|+.+.+.-+.+.+ ...+..+..++.++|+++.+
T Consensus 209 ------~~~-~L~~L~ls~n~l~~~~~~----~~~~L~~L~L~~n~l~~-----------~~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 209 ------IPI-AVEELDASHNSINVVRGP----VNVELTILKLQHNNLTD-----------TAWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp ------CCT-TCSEEECCSSCCCEEECS----CCSCCCEEECCSSCCCC-----------CGGGGGCTTCSEEECCSSCC
T ss_pred ------CCc-hhheeeccCCcccccccc----cCCCCCEEECCCCCCCC-----------ChhhccCCCCCEEECCCCcc
Confidence 334 788888776665543321 12346666665544332 13466778899999999988
Q ss_pred cCCC-CccccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeec
Q 047027 521 CERE-EPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKV 598 (692)
Q Consensus 521 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l 598 (692)
.+.. ..+..+++|+.|.+.++.. ..+|. ...+| +|+.|+|++|. +..+|+ .+..+++|+.|++
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l-----------~~l~~~~~~l~-~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L 331 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRL-----------VALNLYGQPIP-TLKVLDLSHNH-LLHVER--NQPQFDRLENLYL 331 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCC-----------CEEECSSSCCT-TCCEEECCSSC-CCCCGG--GHHHHTTCSEEEC
T ss_pred CCCCHHHhcCccCCCEEECCCCCC-----------CCCCcccccCC-CCcEEECCCCC-CCccCc--ccccCCCCCEEEC
Confidence 7653 3477889999999998753 22333 45578 99999999974 556643 3678999999999
Q ss_pred cccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 599 EGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 599 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
++| .+..++ ...+++|+.|.+++++
T Consensus 332 ~~N-~l~~~~------------------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 332 DHN-SIVTLK------------------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSS-CCCCCC------------------CCTTCCCSEEECCSSC
T ss_pred CCC-CCCCcC------------------hhhcCCCCEEEeeCCC
Confidence 996 455442 3368999999999876
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=7.4e-19 Score=195.45 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=122.2
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 379 (692)
...++++++++.+..+|..+. +++++|++++|. +..++...+..+++|++|++++|.++.+ |..+.++++|++|+
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC---TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 344899999999999998764 789999999997 7777766679999999999999999977 67799999999999
Q ss_pred ccCCCCCcCCCcccccccCCEEecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccc--cce
Q 047027 380 LGMCGRLKRVPSVAKLLALQYLDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRL--DSF 455 (692)
Q Consensus 380 l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L--~~L 455 (692)
+++| .+..+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... .+..+. +| +.|
T Consensus 107 Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~-~L~L~~L 174 (562)
T 3a79_B 107 VSHN-RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVA-HLHLSCI 174 (562)
T ss_dssp CTTS-CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGT-TSCEEEE
T ss_pred CCCC-cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---------chhhhh-hceeeEE
Confidence 9995 57788844 8999999999999998765 7899999999999999988642 355566 66 788
Q ss_pred eEEecCc
Q 047027 456 EGHFFKL 462 (692)
Q Consensus 456 ~~~~~~~ 462 (692)
.+..+.+
T Consensus 175 ~L~~n~l 181 (562)
T 3a79_B 175 LLDLVSY 181 (562)
T ss_dssp EEEESSC
T ss_pred Eeecccc
Confidence 7776554
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.1e-19 Score=186.99 Aligned_cols=102 Identities=20% Similarity=0.292 Sum_probs=52.1
Q ss_pred ccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCC
Q 047027 561 GKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSK 640 (692)
Q Consensus 561 ~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 640 (692)
+.++ +|++|++++|. ++.+++ .+.++++|++|++++|.....++ .....+++|+.|.+++
T Consensus 203 ~~l~-~L~~L~L~~N~-l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p----------------~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 203 ANLQ-NLKSLKIRNSP-LSALGP--AIHHLPKLEELDLRGCTALRNYP----------------PIFGGRAPLKRLILKD 262 (328)
T ss_dssp GGCT-TCCEEEEESSC-CCCCCG--GGGGCTTCCEEECTTCTTCCBCC----------------CCTTCCCCCCEEECTT
T ss_pred cCCC-CCCEEEccCCC-CCcCch--hhccCCCCCEEECcCCcchhhhH----------------HHhcCCCCCCEEECCC
Confidence 3344 55555555532 333322 24445555555555554443332 1222455566666666
Q ss_pred CCCcceeccCCceeecCCcceEEEcCCCCccccCCccccccCCC
Q 047027 641 LPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSLSLPLLDNGQ 684 (692)
Q Consensus 641 ~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l~~L~~l~ 684 (692)
|..+..++. ....+++|+.|++++|+.+..+|.++.+|+++.
T Consensus 263 n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 263 CSNLLTLPL--DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CTTCCBCCT--TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CCchhhcch--hhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 555555554 455556666666666666666666555555543
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=5.7e-19 Score=201.27 Aligned_cols=149 Identities=21% Similarity=0.240 Sum_probs=120.8
Q ss_pred CcceeecCC-cccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 287 GLRLLKFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 287 ~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
+..+..++. ....++++++|++++|.+..++...+..+++|++|++++|. +..+|...|..+++|++|++++|.+..+
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCcc
Confidence 334444443 35667889999999999988776666689999999999996 7788886668999999999999999887
Q ss_pred C-ccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCcc---ccCCCCCCEEEccCCCCCCCCh
Q 047027 366 P-SSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEG---MEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 366 p-~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~---i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
| ..++++++|++|++++|......| .++++++|++|++++|.++.++.. ...+++|++|+++.|.+..++.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred ChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 6 568999999999999976555555 688999999999999998877653 3356889999999998877654
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=7.6e-19 Score=189.09 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=203.8
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEe
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLD 402 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~ 402 (692)
.+++|++|++++|. +..+| . +..+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~-l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSS-ITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSC-CCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCC-cccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEEE
Confidence 67899999999996 66776 3 589999999999999999886 8999999999999964 66665 88999999999
Q ss_pred cccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEE
Q 047027 403 LEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCL 482 (692)
Q Consensus 403 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l 482 (692)
+++|.++.+| ++.+++|++|++++|.+..++ ++.++ +|+.|.+..+...... .......++.+.+
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---------l~~l~-~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 177 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---------VSHNT-QLTELDCHLNKKITKL---DVTPQTQLTTLDC 177 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---------CTTCT-TCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccceec---------cccCC-cCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence 9999999886 899999999999999998765 66778 8888888655221111 1223345666666
Q ss_pred eecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceeccccchhhhhhcCCcccCCccccc
Q 047027 483 WLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGK 562 (692)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~ 562 (692)
..+.+... .+..+..++.+.+..+.+.+. .+..+++|+.|++.++.. .++| +..
T Consensus 178 s~n~l~~l------------~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l-----------~~ip-~~~ 231 (457)
T 3bz5_A 178 SFNKITEL------------DVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL-----------TEID-VTP 231 (457)
T ss_dssp CSSCCCCC------------CCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCC-----------SCCC-CTT
T ss_pred CCCcccee------------ccccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcc-----------cccC-ccc
Confidence 54443321 144556678888888777654 366678888888887652 3344 667
Q ss_pred ccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 563 FSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 563 l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
++ +|+.|+++++ .++.++ ... +++|+.|++++ ++++.+........+. .....+++|+.|++++|+
T Consensus 232 l~-~L~~L~l~~N-~l~~~~-~~~---l~~L~~L~l~~-n~L~~L~l~~n~~~~~-------~~~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 232 LT-QLTYFDCSVN-PLTELD-VST---LSKLTTLHCIQ-TDLLEIDLTHNTQLIY-------FQAEGCRKIKELDVTHNT 297 (457)
T ss_dssp CT-TCSEEECCSS-CCSCCC-CTT---CTTCCEEECTT-CCCSCCCCTTCTTCCE-------EECTTCTTCCCCCCTTCT
T ss_pred cC-CCCEEEeeCC-cCCCcC-HHH---CCCCCEEeccC-CCCCEEECCCCccCCc-------ccccccccCCEEECCCCc
Confidence 77 8899998885 455553 333 34444444443 2333322111110000 112357889999999998
Q ss_pred CcceeccCCceeecCCcceEEEcCCCCccccCCccccccCCCCCCCCC
Q 047027 643 EFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSLSLPLLDNGQPSPPAA 690 (692)
Q Consensus 643 ~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l~~L~~l~~~~~~~ 690 (692)
.++.++. ..++|+.|++++|++|+.+.-+-..++.+..+.+++
T Consensus 298 ~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~ 340 (457)
T 3bz5_A 298 QLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTK 340 (457)
T ss_dssp TCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred ccceecc-----CCCcceEechhhcccCCEEECCCCcccccccccCCc
Confidence 8888764 345566666777766666544333444433333333
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=3.8e-18 Score=192.92 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=125.9
Q ss_pred cceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc
Q 047027 288 LRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS 367 (692)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 367 (692)
..+..+|... ..++++|++++|.+..+|...+..+++|++|++++|. +..+++..|.++++|++|+|++|.++.+|.
T Consensus 41 ~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4566777643 4689999999999999998878899999999999997 788888778999999999999999999975
Q ss_pred -cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcc--cCccccCCCCCCEEEccCCCCCCCCh
Q 047027 368 -SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEE--VPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 368 -~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
.+.++.+|++|++++| .+..+| .++++++|++|++++|.+.. +|..++.+++|++|++++|.+..++.
T Consensus 118 ~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred HHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 4799999999999996 566666 59999999999999998874 57788999999999999998877653
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=1.1e-18 Score=188.90 Aligned_cols=336 Identities=17% Similarity=0.142 Sum_probs=213.4
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cC-CccccCCCCCcEEEcc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VL-PSSVSDLTNLRSLLLG 381 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~ 381 (692)
+.++..++.+..+|. + .+++++|++++|. +..+++..+.++++|++|++++|.+. .+ |..+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L---PAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-C---CTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC-C---CCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 467778888888887 3 2789999999997 56665555699999999999999976 55 5679999999999999
Q ss_pred CCCCCcCCC-cccccccCCEEecccCCCcc-cCcc--ccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeE
Q 047027 382 MCGRLKRVP-SVAKLLALQYLDLEATGIEE-VPEG--MEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEG 457 (692)
Q Consensus 382 ~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~ 457 (692)
+|......| .++++++|++|++++|.+.. +|.. ++.+++|++|++++|.+..++.. .-+.+++ +|+.|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~l~-~L~~L~L 161 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----SFFLNMR-RFHVLDL 161 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----GGGGGCT-TCCEEEC
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----cccCCCC-cccEEeC
Confidence 976555557 79999999999999999884 4544 89999999999999999877320 1267888 9999998
Q ss_pred EecCccchhh-hhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCc----------
Q 047027 458 HFFKLKDFNI-YVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEP---------- 526 (692)
Q Consensus 458 ~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~---------- 526 (692)
..+.+..... .........+..+.+........... +........+..+..++.++++++.+.+....
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY-WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT-CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchh-hccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 7766554322 11111112333333322221110000 00000000111223344444444433210000
Q ss_pred ----------------------------c--ccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEecc
Q 047027 527 ----------------------------I--VLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYC 575 (692)
Q Consensus 527 ----------------------------~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c 575 (692)
+ ...++|+.|++.++.... ..+. ++.++ +|++|++++|
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~----------~~~~~~~~l~-~L~~L~Ls~n 309 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA----------LLKSVFSHFT-DLEQLTLAQN 309 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE----------ECTTTTTTCT-TCCEEECTTS
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc----------cchhhcccCC-CCCEEECCCC
Confidence 0 012456666666544211 1121 56677 8899998886
Q ss_pred CCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceee
Q 047027 576 GNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLV 655 (692)
Q Consensus 576 ~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~ 655 (692)
. ++.+++ ..+.++++|++|++++| .++.++. .....+++|+.|+++++. +..+.. ..+..
T Consensus 310 ~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---------------~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~ 369 (455)
T 3v47_A 310 E-INKIDD-NAFWGLTHLLKLNLSQN-FLGSIDS---------------RMFENLDKLEVLDLSYNH-IRALGD-QSFLG 369 (455)
T ss_dssp C-CCEECT-TTTTTCTTCCEEECCSS-CCCEECG---------------GGGTTCTTCCEEECCSSC-CCEECT-TTTTT
T ss_pred c-ccccCh-hHhcCcccCCEEECCCC-ccCCcCh---------------hHhcCcccCCEEECCCCc-ccccCh-hhccc
Confidence 4 444432 34667888999999985 5544421 123468999999999884 565532 25677
Q ss_pred cCCcceEEEcCCCCccccCCc-cccccCC
Q 047027 656 CNSLQEIKVYGCPKLKRLSLS-LPLLDNG 683 (692)
Q Consensus 656 ~~~L~~L~i~~C~~L~~lP~~-l~~L~~l 683 (692)
+++|+.|++.+| ++..+|.. +..+++|
T Consensus 370 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 370 LPNLKELALDTN-QLKSVPDGIFDRLTSL 397 (455)
T ss_dssp CTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred cccccEEECCCC-ccccCCHhHhccCCcc
Confidence 899999999986 57777753 2444333
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=5.4e-18 Score=184.58 Aligned_cols=295 Identities=20% Similarity=0.172 Sum_probs=226.4
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 381 (692)
-+.++.+++.+..+|..+. +++++|++++|. +..++...|..+++|++|+|++|.++.+ |..+.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~---~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP---TETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC---TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC---CCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 3578888888899988754 579999999997 6777665669999999999999999877 7789999999999999
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
+| .+..+| .++++++|++|++++|.+..+ |..+.++++|++|++++|.+..++. ..+..+. +|+.|.+.
T Consensus 89 ~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~-~L~~L~l~ 160 (477)
T 2id5_A 89 SN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH------RAFSGLN-SLEQLTLE 160 (477)
T ss_dssp SS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT------TSSTTCT-TCCEEEEE
T ss_pred CC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh------hhccCCC-CCCEEECC
Confidence 95 567777 489999999999999999866 4678999999999999998876653 2567788 88888887
Q ss_pred ecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCC-ccccccccccce
Q 047027 459 FFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREE-PIVLPEDVQFLQ 537 (692)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~-~~~~~~~L~~L~ 537 (692)
.+.+..... ..+..+..++.+.+.++.+..... .+..+++|+.|+
T Consensus 161 ~n~l~~~~~----------------------------------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 161 KCNLTSIPT----------------------------------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp SCCCSSCCH----------------------------------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred CCcCcccCh----------------------------------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 665543221 124455667888888877765433 366788999999
Q ss_pred eccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhh
Q 047027 538 MNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETE 616 (692)
Q Consensus 538 l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~ 616 (692)
+.++..+.. ++. ....+ +|++|++++| .++.++ ...+.++++|+.|+++++ .++.++..
T Consensus 207 l~~~~~~~~----------~~~~~~~~~-~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~------ 266 (477)
T 2id5_A 207 ISHWPYLDT----------MTPNCLYGL-NLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSYN-PISTIEGS------ 266 (477)
T ss_dssp EECCTTCCE----------ECTTTTTTC-CCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCSS-CCCEECTT------
T ss_pred CCCCccccc----------cCcccccCc-cccEEECcCC-cccccC-HHHhcCccccCeeECCCC-cCCccChh------
Confidence 998775432 222 33345 8999999996 466663 345788999999999995 56655321
Q ss_pred hhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccCC
Q 047027 617 KELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSL 675 (692)
Q Consensus 617 ~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~ 675 (692)
....+++|+.|.++++. +..+.. ..+..+++|+.|++++| ++..+|.
T Consensus 267 ---------~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 267 ---------MLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp ---------SCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred ---------hccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCC-cCceeCH
Confidence 23468999999999874 666533 26777899999999998 6777775
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=4.2e-18 Score=176.00 Aligned_cols=289 Identities=18% Similarity=0.157 Sum_probs=168.1
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 379 (692)
.+++.++++++.+..+|..+. +++++|++++|. +..++...+..+++|++|++++|.++.+ |..++++++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC---CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 357888888888888877653 578888888886 5666555557888888888888888766 66788888888888
Q ss_pred ccCCCCCcCCC-cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCC---CChhHHhhHHHhhhhhccccc
Q 047027 380 LGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKK---FPAALRETVEEAASLSDRLDS 454 (692)
Q Consensus 380 l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~---lp~~l~~~~~~l~~L~~~L~~ 454 (692)
+++| .+..+| .+. ++|++|++++|.+..+|.. +.++++|++|++++|.+.. .|. .+..+ +|+.
T Consensus 109 L~~n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~~l--~L~~ 176 (332)
T 2ft3_A 109 ISKN-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG-------AFDGL--KLNY 176 (332)
T ss_dssp CCSS-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------SSCSC--CCSC
T ss_pred CCCC-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------cccCC--ccCE
Confidence 8874 566777 444 7888888888888877754 6788888888888877652 121 12221 3444
Q ss_pred eeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCC-Ccccccccc
Q 047027 455 FEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICERE-EPIVLPEDV 533 (692)
Q Consensus 455 L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~-~~~~~~~~L 533 (692)
|.+..+.+...+.. -...++.+.++++.+.... ..+..+++|
T Consensus 177 L~l~~n~l~~l~~~-------------------------------------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L 219 (332)
T 2ft3_A 177 LRISEAKLTGIPKD-------------------------------------LPETLNELHLDHNKIQAIELEDLLRYSKL 219 (332)
T ss_dssp CBCCSSBCSSCCSS-------------------------------------SCSSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred EECcCCCCCccCcc-------------------------------------ccCCCCEEECCCCcCCccCHHHhcCCCCC
Confidence 44433222221100 0012455556665555443 235556677
Q ss_pred ccceeccccchhhhhhcCCcccCCc--ccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccC
Q 047027 534 QFLQMNRVHDVASLNDVLPREQGLV--NIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVD 611 (692)
Q Consensus 534 ~~L~l~~~~~~~~~~~~~~~l~~l~--~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~ 611 (692)
+.|++.++.. ..++ .+..++ +|++|++++| .++.+|. .+..+++|+.|++++ +.++.++...
T Consensus 220 ~~L~L~~N~l-----------~~~~~~~~~~l~-~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~-N~l~~~~~~~ 283 (332)
T 2ft3_A 220 YRLGLGHNQI-----------RMIENGSLSFLP-TLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHT-NNITKVGVND 283 (332)
T ss_dssp SCCBCCSSCC-----------CCCCTTGGGGCT-TCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCS-SCCCBCCTTS
T ss_pred CEEECCCCcC-----------CcCChhHhhCCC-CCCEEECCCC-cCeecCh--hhhcCccCCEEECCC-CCCCccChhH
Confidence 7777766542 1222 245566 7777777764 3445533 255666777777776 3555543221
Q ss_pred cchhhhhhcccceeeeeccCCcceeecCCCCCcc-eeccCCceeecCCcceEEEcCCC
Q 047027 612 DEETEKELATNTIVNTVTLPRLKKLRFSKLPEFK-SVCSNNGVLVCNSLQEIKVYGCP 668 (692)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~~~~~~~~~~~~~L~~L~i~~C~ 668 (692)
.... .....+++|+.|.+.+.+-.. .+. +..+..+++|+.+++.++.
T Consensus 284 ~~~~---------~~~~~~~~l~~L~l~~N~~~~~~~~-~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 284 FCPV---------GFGVKRAYYNGISLFNNPVPYWEVQ-PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCS---------SCCSSSCCBSEEECCSSSSCGGGSC-GGGGTTBCCSTTEEC----
T ss_pred cccc---------ccccccccccceEeecCcccccccC-cccccccchhhhhhccccc
Confidence 0000 000124566677776665221 111 1134455666666666654
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=8e-18 Score=173.93 Aligned_cols=278 Identities=16% Similarity=0.203 Sum_probs=200.1
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|... .++++.|++++|.+..++...+..+++|++|++++|. +..+++..+..+++|++|++++|.++.+|
T Consensus 42 ~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 118 (332)
T 2ft3_A 42 DLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIP 118 (332)
T ss_dssp SSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCSCC
T ss_pred CCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCccC
Confidence 34455666543 4689999999999998877666799999999999997 66665555699999999999999999999
Q ss_pred ccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCc---ccCccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 367 SSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIE---EVPEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 367 ~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
..+. .+|++|++++| .+..+| .++++++|++|++++|.++ ..|..+..+ +|++|+++.|.+..+|.
T Consensus 119 ~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~----- 189 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK----- 189 (332)
T ss_dssp SSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-----
T ss_pred cccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-----
Confidence 8776 89999999995 456666 4899999999999999886 345667777 99999999999998885
Q ss_pred HHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeeccccc
Q 047027 442 VEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKIC 521 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~ 521 (692)
.+. . +|+.|.+..+.+.... ...+..+..++.+++.++.+.
T Consensus 190 --~~~--~-~L~~L~l~~n~i~~~~----------------------------------~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 190 --DLP--E-TLNELHLDHNKIQAIE----------------------------------LEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp --SSC--S-SCSCCBCCSSCCCCCC----------------------------------TTSSTTCTTCSCCBCCSSCCC
T ss_pred --ccc--C-CCCEEECCCCcCCccC----------------------------------HHHhcCCCCCCEEECCCCcCC
Confidence 222 4 7777777655443321 112334555777888887776
Q ss_pred CCCC-ccccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHH-----hhcCcc
Q 047027 522 EREE-PIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLP-----ALQNLE 594 (692)
Q Consensus 522 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~-----~L~~L~ 594 (692)
.... .+..+++|+.|++.++.. ..+|. +..++ +|+.|+++++ .++.+++....+ ..++|+
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l-----------~~lp~~l~~l~-~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKL-----------SRVPAGLPDLK-LLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCC-----------CBCCTTGGGCT-TCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBS
T ss_pred cCChhHhhCCCCCCEEECCCCcC-----------eecChhhhcCc-cCCEEECCCC-CCCccChhHcccccccccccccc
Confidence 6554 467789999999998752 23443 67788 9999999985 466654321111 146799
Q ss_pred eeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 595 VLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 595 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
.|++.+++ +....... .....+++|+.+.+.++.
T Consensus 298 ~L~l~~N~-~~~~~~~~-------------~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 298 GISLFNNP-VPYWEVQP-------------ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSS-SCGGGSCG-------------GGGTTBCCSTTEEC----
T ss_pred ceEeecCc-ccccccCc-------------ccccccchhhhhhccccc
Confidence 99999964 33221111 123357888888887764
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.5e-18 Score=177.50 Aligned_cols=134 Identities=21% Similarity=0.361 Sum_probs=110.7
Q ss_pred ccccEEEeecCCcc---ccCCCCCCCCCCccEEEccC-CCccCCCchhHhhcCCCCcEEEccCCCCc-cCCccccCCCCC
Q 047027 301 ENLERVSLMRNNIE---EIPSNMSPHCEILSTLLLQR-NGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPSSVSDLTNL 375 (692)
Q Consensus 301 ~~l~~l~l~~~~~~---~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L 375 (692)
.++++|+++++.+. .+|..+. .+++|++|++++ |.....+|..+ ..+++|++|++++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46889999999887 4666554 889999999995 76555777765 88999999999999987 778889999999
Q ss_pred cEEEccCCCCCcCCC-cccccccCCEEecccCCCc-ccCccccCCC-CCCEEEccCCCCC-CCCh
Q 047027 376 RSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE-EVPEGMEMLE-NLSHLYLYLPLLK-KFPA 436 (692)
Q Consensus 376 ~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~-~lp~ 436 (692)
++|++++|.....+| .++++++|++|++++|.+. .+|..++.++ +|++|++++|.+. .+|.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 999999876555778 7899999999999999888 8888899887 8999999888775 3443
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=2e-17 Score=177.88 Aligned_cols=121 Identities=26% Similarity=0.411 Sum_probs=56.2
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
+++++|++++|.+..+|.. .++|+.|++++|. +..++. ..++|++|++++|.++.+| .++++.+|++|++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL----PQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC----CTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCccccc----cCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 4455555555555554432 2445555555543 333322 0134555555555555444 3555555555555
Q ss_pred cCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 381 GMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 381 ~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
++| .+..+|.. ..+|++|++++|.++.+| +++++++|++|++++|.+..+|
T Consensus 161 ~~N-~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 161 DNN-SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CSS-CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred CCC-cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 543 23334421 124555555555544444 3445555555555554444443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=1.4e-17 Score=172.01 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=101.1
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEc
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLL 380 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l 380 (692)
+++.++++++.+..+|..+. +++++|++++|. +..++...+..+++|++|++++|.++.+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCC---CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56777777777777776543 567788888876 6666665557788888888888887766 667778888888888
Q ss_pred cCCCCCcCCC-cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 381 GMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 381 ~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
++| .+..+| .+. ++|++|++++|.+..++. .+.++++|++|+++.|.+...+. ....+..++ +|+.|.+.
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~-~L~~L~l~ 179 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI----ENGAFQGMK-KLSYIRIA 179 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----CTTGGGGCT-TCCEEECC
T ss_pred CCC-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc----ChhhccCCC-CcCEEECC
Confidence 874 456666 443 678888888887776664 36777888888887777653110 011455566 66666654
Q ss_pred ecCc
Q 047027 459 FFKL 462 (692)
Q Consensus 459 ~~~~ 462 (692)
.+.+
T Consensus 180 ~n~l 183 (330)
T 1xku_A 180 DTNI 183 (330)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 4433
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.1e-17 Score=185.51 Aligned_cols=265 Identities=17% Similarity=0.148 Sum_probs=154.5
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEcc
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLG 381 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 381 (692)
+++.++++++.+..+|..+. ++|+.|++++|. +..+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35666666666666665543 566677777665 555554 35667777777776666665 55667777776
Q ss_pred CCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecC
Q 047027 382 MCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFK 461 (692)
Q Consensus 382 ~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~ 461 (692)
+| .+..+|. .+.+|++|++++|.++.+|.. +++|++|++++|.+..+|. ... +|+.|.+..+.
T Consensus 110 ~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----------~~~-~L~~L~L~~N~ 172 (622)
T 3g06_A 110 SN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----------LPS-ELCKLWAYNNQ 172 (622)
T ss_dssp SC-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----------CCT-TCCEEECCSSC
T ss_pred CC-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----------ccC-CCCEEECCCCC
Confidence 63 4555554 456667777777766666653 3566777776666665553 112 44444444333
Q ss_pred ccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceeccc
Q 047027 462 LKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRV 541 (692)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 541 (692)
+...+. .+..++.+++.++.+...+. .+++|+.|.+.++
T Consensus 173 l~~l~~--------------------------------------~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N 211 (622)
T 3g06_A 173 LTSLPM--------------------------------------LPSGLQELSVSDNQLASLPT---LPSELYKLWAYNN 211 (622)
T ss_dssp CSCCCC--------------------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCcc--------------------------------------cCCCCcEEECCCCCCCCCCC---ccchhhEEECcCC
Confidence 322110 11224445555554443221 2456777777665
Q ss_pred cchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcc
Q 047027 542 HDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELAT 621 (692)
Q Consensus 542 ~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 621 (692)
.. ..+|. .++ +|+.|++++| .++.+| ..+++|+.|+++++ .++.++.
T Consensus 212 ~l-----------~~l~~--~~~-~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~------------ 258 (622)
T 3g06_A 212 RL-----------TSLPA--LPS-GLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM------------ 258 (622)
T ss_dssp CC-----------SSCCC--CCT-TCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC------------
T ss_pred cc-----------cccCC--CCC-CCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc------------
Confidence 42 22222 124 7888888775 455553 23467788888874 5655531
Q ss_pred cceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCCCCccccCCccc
Q 047027 622 NTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGCPKLKRLSLSLP 678 (692)
Q Consensus 622 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~lP~~l~ 678 (692)
.+++|+.|.++++ ++..+|. .+..+++|+.|++.+|+--...|..+.
T Consensus 259 -------~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 259 -------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -------CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred -------ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCCcCHHHHH
Confidence 3577888888776 5666665 667778888888887765444444443
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=4.7e-17 Score=168.01 Aligned_cols=284 Identities=15% Similarity=0.132 Sum_probs=195.2
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|... .++++.|++++|.+..++...+..+++|++|++++|. +..+++..+..+++|++|++++|.++.+|
T Consensus 40 ~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~ 116 (330)
T 1xku_A 40 DLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELP 116 (330)
T ss_dssp TSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred CCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccC
Confidence 34455666533 3689999999999999988767799999999999997 66664444589999999999999999998
Q ss_pred ccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCc---ccCccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 367 SSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIE---EVPEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 367 ~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
..+. .+|++|++++| .+..++ .++++++|++|++++|.+. ..|..+.++++|++|++++|.+..+|..
T Consensus 117 ~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~---- 189 (330)
T 1xku_A 117 EKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---- 189 (330)
T ss_dssp SSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----
T ss_pred hhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc----
Confidence 8765 79999999996 455666 5899999999999999886 4456789999999999999999988851
Q ss_pred HHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeeccccc
Q 047027 442 VEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKIC 521 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~ 521 (692)
+. . +|+.|.+..+.+....
T Consensus 190 ---~~--~-~L~~L~l~~n~l~~~~------------------------------------------------------- 208 (330)
T 1xku_A 190 ---LP--P-SLTELHLDGNKITKVD------------------------------------------------------- 208 (330)
T ss_dssp ---CC--T-TCSEEECTTSCCCEEC-------------------------------------------------------
T ss_pred ---cc--c-cCCEEECCCCcCCccC-------------------------------------------------------
Confidence 11 3 5666655433322210
Q ss_pred CCCCccccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeecccc
Q 047027 522 EREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGC 601 (692)
Q Consensus 522 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c 601 (692)
+..+..+++|+.|++.++.... .....+..++ +|++|++++| .++.+|. .+..+++|++|+++++
T Consensus 209 --~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~-~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 209 --AASLKGLNNLAKLGLSFNSISA---------VDNGSLANTP-HLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN 273 (330)
T ss_dssp --TGGGTTCTTCCEEECCSSCCCE---------ECTTTGGGST-TCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS
T ss_pred --HHHhcCCCCCCEEECCCCcCce---------eChhhccCCC-CCCEEECCCC-cCccCCh--hhccCCCcCEEECCCC
Confidence 1113345566777776654211 0011255667 8888888886 4555543 3567788888888884
Q ss_pred ccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceecc-CCceeecCCcceEEEcCC
Q 047027 602 DSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCS-NNGVLVCNSLQEIKVYGC 667 (692)
Q Consensus 602 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~-~~~~~~~~~L~~L~i~~C 667 (692)
.++.++....... .....+++|+.|.+.+.|- ..+.. +..+..+++++.++++++
T Consensus 274 -~i~~~~~~~f~~~---------~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 -NISAIGSNDFCPP---------GYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -CCCCCCTTSSSCS---------SCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred -cCCccChhhcCCc---------ccccccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 6666543211100 0111357888899988763 32211 136677888999888775
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.1e-16 Score=172.19 Aligned_cols=306 Identities=16% Similarity=0.181 Sum_probs=195.7
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
....+..+|. ...++++|++++|.+..++.. .++|++|++++|. +..+|. ++.+++|++|++++|.++.+
T Consensus 99 ~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~-l~~lp~--~~~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 99 SCNSLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQ-LEKLPE--LQNSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp CSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred cCCcCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCC-CCCCcc--cCCCCCCCEEECCCCcCccc
Confidence 3444445553 247899999999998877642 2689999999997 667883 58999999999999999988
Q ss_pred CccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHh
Q 047027 366 PSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEA 445 (692)
Q Consensus 366 p~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l 445 (692)
|..+ .+|++|++++| .+..+|.++++++|++|++++|.++.+|... .+|++|++++|.+..+|. +
T Consensus 169 p~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~--------~ 233 (454)
T 1jl5_A 169 PDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE--------L 233 (454)
T ss_dssp CCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC--------C
T ss_pred CCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc--------c
Confidence 8654 58999999996 5667889999999999999999999888644 589999999999998883 6
Q ss_pred hhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCC
Q 047027 446 ASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREE 525 (692)
Q Consensus 446 ~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~ 525 (692)
+.+. +|+.|.+..+.+...+.. ...++.+.+.-+.+.+. . . ....++.++++++.+.+.+
T Consensus 234 ~~l~-~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~l--~-----~------~~~~L~~L~ls~N~l~~l~- 293 (454)
T 1jl5_A 234 QNLP-FLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDL--P-----E------LPQSLTFLDVSENIFSGLS- 293 (454)
T ss_dssp TTCT-TCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSCC--C-----C------CCTTCCEEECCSSCCSEES-
T ss_pred CCCC-CCCEEECCCCcCCccccc-----ccccCEEECCCCccccc--C-----c------ccCcCCEEECcCCccCccc-
Confidence 7888 999999877666543321 13455555543332210 0 0 0134677777776655422
Q ss_pred ccccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccch
Q 047027 526 PIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIE 605 (692)
Q Consensus 526 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~ 605 (692)
..+++|+.|++.++... . +..++++|++|+++++ .++.+|.. +++|++|++++| .++
T Consensus 294 --~~~~~L~~L~l~~N~l~-----------~---i~~~~~~L~~L~Ls~N-~l~~lp~~-----~~~L~~L~L~~N-~l~ 350 (454)
T 1jl5_A 294 --ELPPNLYYLNASSNEIR-----------S---LCDLPPSLEELNVSNN-KLIELPAL-----PPRLERLIASFN-HLA 350 (454)
T ss_dssp --CCCTTCCEEECCSSCCS-----------E---ECCCCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSS-CCS
T ss_pred --CcCCcCCEEECcCCcCC-----------c---ccCCcCcCCEEECCCC-cccccccc-----CCcCCEEECCCC-ccc
Confidence 22467788887765421 1 2233348889998885 45555432 468899999885 566
Q ss_pred hhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcce---eccCCceeec-------------CCcceEEEcCCCC
Q 047027 606 EIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKS---VCSNNGVLVC-------------NSLQEIKVYGCPK 669 (692)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~---~~~~~~~~~~-------------~~L~~L~i~~C~~ 669 (692)
.++. .+++|+.|+++++. +.. +|. ....+ ++|+.|++++++-
T Consensus 351 ~lp~-------------------~l~~L~~L~L~~N~-l~~l~~ip~--~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 351 EVPE-------------------LPQNLKQLHVEYNP-LREFPDIPE--SVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp CCCC-------------------CCTTCCEEECCSSC-CSSCCCCCT--TCCEEECCC----------------------
T ss_pred cccc-------------------hhhhccEEECCCCC-CCcCCCChH--HHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 5531 36789999998864 433 333 44444 7899999988765
Q ss_pred cc--ccCCcccccc
Q 047027 670 LK--RLSLSLPLLD 681 (692)
Q Consensus 670 L~--~lP~~l~~L~ 681 (692)
-. .+|.++..|+
T Consensus 409 ~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 409 REFPDIPESVEDLR 422 (454)
T ss_dssp --------------
T ss_pred CccccchhhHhhee
Confidence 55 5776666554
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=191.03 Aligned_cols=327 Identities=17% Similarity=0.161 Sum_probs=218.9
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC-CccC-CccccCCCCCcEEEcc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN-IEVL-PSSVSDLTNLRSLLLG 381 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~~L~l~ 381 (692)
+..+.+++.+..+|. . .+++++|++++|. +..+++..|.++++|++|++++|. +..+ |..++++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~-l---p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V---LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS-S---CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC-C---CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467788888999987 3 4789999999997 566654456999999999999995 5566 7789999999999999
Q ss_pred CCCCCcCCC-cccccccCCEEecccCCCcc-cCcc--ccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeE
Q 047027 382 MCGRLKRVP-SVAKLLALQYLDLEATGIEE-VPEG--MEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEG 457 (692)
Q Consensus 382 ~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~ 457 (692)
+|......| .++++++|++|++++|.+.. +|.. ++++++|++|++++|.+..++. ...+++++ +|+.|++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-----~~~~~~L~-~L~~L~L 155 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-----HPSFGKLN-SLKSIDF 155 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-----CGGGGTCS-SCCEEEE
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-----chhHhhCC-CCCEEEC
Confidence 976555557 79999999999999998884 5655 8999999999999999877642 12588999 9999999
Q ss_pred EecCccchh-hhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCc-cc---c---
Q 047027 458 HFFKLKDFN-IYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEP-IV---L--- 529 (692)
Q Consensus 458 ~~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~-~~---~--- 529 (692)
..+.+.... ..+.......++.+.+..+............. ...+.. ..++.++++++.+...... +. .
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~--~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~ 232 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC--MNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQ 232 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS--SCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc--CCcccc-CceeEEecCCCcCchhHHHHHHhhcCccc
Confidence 877664421 11111112456666666554433211100000 001111 1367778877654432211 00 0
Q ss_pred --------------------------------ccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCC
Q 047027 530 --------------------------------PEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGN 577 (692)
Q Consensus 530 --------------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~ 577 (692)
+++|+.|++.++.... .....+..++ +|+.|+++++ .
T Consensus 233 l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~---------~~~~~~~~l~-~L~~L~L~~n-~ 301 (844)
T 3j0a_A 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---------LNSRVFETLK-DLKVLNLAYN-K 301 (844)
T ss_dssp BSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE---------ECSCCSSSCC-CCCEEEEESC-C
T ss_pred ccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc---------cChhhhhcCC-CCCEEECCCC-c
Confidence 1345555555443110 0011256677 8999999885 4
Q ss_pred ccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecC
Q 047027 578 LKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCN 657 (692)
Q Consensus 578 l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~ 657 (692)
+..+++ ..+.++++|++|+++++ .++.+.. .....+++|+.|+++++ ++..++. ..+..++
T Consensus 302 i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---------------~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~ 362 (844)
T 3j0a_A 302 INKIAD-EAFYGLDNLQVLNLSYN-LLGELYS---------------SNFYGLPKVAYIDLQKN-HIAIIQD-QTFKFLE 362 (844)
T ss_dssp CCEECT-TTTTTCSSCCEEEEESC-CCSCCCS---------------CSCSSCTTCCEEECCSC-CCCCCCS-SCSCSCC
T ss_pred CCCCCh-HHhcCCCCCCEEECCCC-CCCccCH---------------HHhcCCCCCCEEECCCC-CCCccCh-hhhcCCC
Confidence 444433 34677889999999985 5544421 23446899999999987 5666654 2466789
Q ss_pred CcceEEEcCCCCccccCC
Q 047027 658 SLQEIKVYGCPKLKRLSL 675 (692)
Q Consensus 658 ~L~~L~i~~C~~L~~lP~ 675 (692)
+|+.|++++|. +..+|.
T Consensus 363 ~L~~L~Ls~N~-l~~i~~ 379 (844)
T 3j0a_A 363 KLQTLDLRDNA-LTTIHF 379 (844)
T ss_dssp CCCEEEEETCC-SCCCSS
T ss_pred CCCEEECCCCC-CCcccC
Confidence 99999999874 555543
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=4.4e-18 Score=174.07 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=105.8
Q ss_pred CCccEEEccCCCccC--CCchhHhhcCCCCcEEEccC-CCCc-cCCccccCCCCCcEEEccCCCCCcCCC-cccccccCC
Q 047027 325 EILSTLLLQRNGLLQ--RIPECFFVHMHGLKVLNLSR-TNIE-VLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQ 399 (692)
Q Consensus 325 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~ 399 (692)
.+++.|++++|.... .+|..+ ..+++|++|++++ +.+. .+|..++++++|++|++++|.....+| .++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999998544 677765 8999999999995 7776 779999999999999999976655888 799999999
Q ss_pred EEecccCCCc-ccCccccCCCCCCEEEccCCCCC-CCChhHHhhHHHhhhhhccccceeEEec
Q 047027 400 YLDLEATGIE-EVPEGMEMLENLSHLYLYLPLLK-KFPAALRETVEEAASLSDRLDSFEGHFF 460 (692)
Q Consensus 400 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~-~lp~~l~~~~~~l~~L~~~L~~L~~~~~ 460 (692)
+|++++|.+. .+|..++.+++|++|++++|.+. .+|. .+.++...|+.|.+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-------~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-------SYGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG-------GGGCCCTTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH-------HHhhhhhcCcEEECcCC
Confidence 9999999888 78999999999999999999886 6775 45555325666665443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=171.37 Aligned_cols=165 Identities=23% Similarity=0.260 Sum_probs=96.0
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|... .+++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.+|
T Consensus 40 ~~~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 40 SGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp STTCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSSCC
T ss_pred CCCcccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCcCC
Confidence 34444555432 2456666666666666665444566666666666664 44444444466666666666666666665
Q ss_pred cc-ccCCCCCcEEEccCCCCCcCCCc---ccccccCCEEecccC-CCcccC-ccccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 367 SS-VSDLTNLRSLLLGMCGRLKRVPS---VAKLLALQYLDLEAT-GIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 367 ~~-i~~l~~L~~L~l~~c~~~~~lp~---~~~l~~L~~L~l~~~-~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
.. ++++++|++|++++| .+..+|. ++++++|++|++++| .+..++ ..++++++|++|++++|.+..++.
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 191 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP---- 191 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT----
T ss_pred HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH----
Confidence 54 566666666666664 3444442 566666666666666 455543 445666666666666666554421
Q ss_pred hHHHhhhhhccccceeEEecCc
Q 047027 441 TVEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 441 ~~~~l~~L~~~L~~L~~~~~~~ 462 (692)
..++.++ +|+.|.+..+.+
T Consensus 192 --~~l~~l~-~L~~L~l~~n~l 210 (353)
T 2z80_A 192 --KSLKSIQ-NVSHLILHMKQH 210 (353)
T ss_dssp --TTTTTCS-EEEEEEEECSCS
T ss_pred --HHHhccc-cCCeecCCCCcc
Confidence 1455555 666666554444
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.4e-16 Score=172.02 Aligned_cols=128 Identities=27% Similarity=0.352 Sum_probs=88.3
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 381 (692)
.+.++..+..+..+|..+. ++++.|++++|. +..++...|.++++|++|++++|.++.++ ..+.++.+|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC---CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4566666777777776543 567778888776 55555444577788888888888777653 567777888888887
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccC-CCCCCCC
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYL-PLLKKFP 435 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~-~~~~~lp 435 (692)
+| .+..+| .++++++|++|++++|.+..+|. .+.++++|+.|++++ +.++.+|
T Consensus 132 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 188 (452)
T 3zyi_A 132 DN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188 (452)
T ss_dssp SS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence 75 455555 37778888888888887777764 467777888888765 4444444
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=171.28 Aligned_cols=121 Identities=31% Similarity=0.417 Sum_probs=80.0
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 381 (692)
.+.++..+..+..+|..+. ++++.|++++|. +..++...|.++++|++|+|++|.++.++ ..+.++.+|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC---CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4456666666677776543 566777777775 55555444567777777777777776654 456677777777777
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccC
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYL 428 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 428 (692)
+| .+..+| .+.++++|++|++++|.+..+|. .+.++++|++|++++
T Consensus 121 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 121 DN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 74 455555 36777777777777777776664 456677777777765
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=4.5e-16 Score=175.82 Aligned_cols=129 Identities=22% Similarity=0.226 Sum_probs=108.6
Q ss_pred EEecCcceeecCC-cccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 283 MVKAGLRLLKFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
.......+..++. ....++++++|++++|.+..+++..+..+++|++|+|++|. +..+|...|.++.+|++|++++|.
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc
Confidence 3344555666654 45678899999999999999998888899999999999997 888888878999999999999999
Q ss_pred CccCCc-cccCCCCCcEEEccCCCCCc-CCC-cccccccCCEEecccCCCcccC
Q 047027 362 IEVLPS-SVSDLTNLRSLLLGMCGRLK-RVP-SVAKLLALQYLDLEATGIEEVP 412 (692)
Q Consensus 362 ~~~lp~-~i~~l~~L~~L~l~~c~~~~-~lp-~~~~l~~L~~L~l~~~~l~~lp 412 (692)
++.+|+ .++++++|++|++++|.... ..| .++++++|++|++++|.++.++
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 998875 58999999999999965332 345 6889999999999999888665
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.7e-16 Score=171.26 Aligned_cols=165 Identities=28% Similarity=0.343 Sum_probs=137.0
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..++++|++++|.+..++...+..+++|+.|++++|. +..++...|.++++|++|+|++|.++.+
T Consensus 62 ~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCCcc
Confidence 344556677543 4689999999999998877777799999999999997 6677766679999999999999999988
Q ss_pred Ccc-ccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccC-CCcccCc-cccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 366 PSS-VSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEAT-GIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 366 p~~-i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
|.. +..+++|++|++++| .+..+| .+.++++|++|++++| .+..+|. .+..+++|++|++++|.+..+|
T Consensus 139 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----- 212 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----- 212 (452)
T ss_dssp CTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-----
T ss_pred ChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-----
Confidence 765 888999999999996 466666 5999999999999996 7788876 4789999999999999999888
Q ss_pred hHHHhhhhhccccceeEEecCcc
Q 047027 441 TVEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 441 ~~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
.+..+. +|+.|.+..+.+.
T Consensus 213 ---~~~~l~-~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 213 ---NLTPLV-GLEELEMSGNHFP 231 (452)
T ss_dssp ---CCTTCT-TCCEEECTTSCCS
T ss_pred ---cccccc-cccEEECcCCcCc
Confidence 367777 8888877655443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=170.65 Aligned_cols=165 Identities=25% Similarity=0.333 Sum_probs=138.2
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..+++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|+|++|.++.+
T Consensus 51 ~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CSCCCSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred CCCCcCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCee
Confidence 345566777644 4789999999999999887777799999999999997 7777766779999999999999999988
Q ss_pred Cc-cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccC-CCcccCc-cccCCCCCCEEEccCCCCCCCChhHHh
Q 047027 366 PS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEAT-GIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRE 440 (692)
Q Consensus 366 p~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~ 440 (692)
|. .+..+++|++|++++| .+..+| .+.++++|++|++++| .+..+|. .+.++++|++|++++|.+..+|.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---- 202 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN---- 202 (440)
T ss_dssp CTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC----
T ss_pred CHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc----
Confidence 76 5899999999999996 466666 5999999999999996 7777776 57899999999999999998883
Q ss_pred hHHHhhhhhccccceeEEecCcc
Q 047027 441 TVEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 441 ~~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
+..+. +|+.|.+..+.+.
T Consensus 203 ----~~~l~-~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 203 ----LTPLI-KLDELDLSGNHLS 220 (440)
T ss_dssp ----CTTCS-SCCEEECTTSCCC
T ss_pred ----cCCCc-ccCEEECCCCccC
Confidence 67777 8888877655443
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=7.1e-17 Score=164.77 Aligned_cols=125 Identities=21% Similarity=0.270 Sum_probs=83.6
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC---CccccCCCCCcEEEc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL---PSSVSDLTNLRSLLL 380 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l 380 (692)
+.++..++.+..+|..+. ++++.|++++|. +..+|..++..+++|++|++++|.++.. |..+..+.+|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC---CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 356666666777766543 467777777775 5666666667777777777777776643 455566777777777
Q ss_pred cCCCCCcCCC-cccccccCCEEecccCCCcccCc--cccCCCCCCEEEccCCCCCC
Q 047027 381 GMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPE--GMEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 381 ~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~ 433 (692)
++| .+..+| .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 86 s~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 86 SFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 774 445566 57777777777777777766653 56677777777777766543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.3e-15 Score=168.93 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=121.0
Q ss_pred EEecCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCC
Q 047027 283 MVKAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNI 362 (692)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 362 (692)
+.-.+..+..+|.... ++++.|++++|.+..+|. .+++|++|++++|. +..+|. .+++|++|++++|.+
T Consensus 45 L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPL 113 (622)
T ss_dssp EECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCC
T ss_pred EEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcC
Confidence 3344555667776443 789999999999998876 46899999999997 777876 679999999999999
Q ss_pred ccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhH
Q 047027 363 EVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETV 442 (692)
Q Consensus 363 ~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~ 442 (692)
+.+|. .+.+|++|++++| .+..+|.. +++|++|++++|.+..+|.. +.+|+.|++++|.+..+|.
T Consensus 114 ~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~------ 178 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPM------ 178 (622)
T ss_dssp CCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC------
T ss_pred CCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCcc------
Confidence 99987 6789999999985 57778842 48999999999999988863 4678999999999988873
Q ss_pred HHhhhhhccccceeEEecCccc
Q 047027 443 EEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 443 ~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
.+. +|+.|.+..+.+..
T Consensus 179 ----~~~-~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 179 ----LPS-GLQELSVSDNQLAS 195 (622)
T ss_dssp ----CCT-TCCEEECCSSCCSC
T ss_pred ----cCC-CCcEEECCCCCCCC
Confidence 235 77888777665554
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=163.77 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=142.2
Q ss_pred cCcceeecCC-cccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc
Q 047027 286 AGLRLLKFPG-EQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV 364 (692)
Q Consensus 286 ~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 364 (692)
.+..+..++. ....++++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKT 138 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCCCSS
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCCCcc
Confidence 3344455554 45667899999999999998877666789999999999997 778888877999999999999999999
Q ss_pred CCc--cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHH
Q 047027 365 LPS--SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALR 439 (692)
Q Consensus 365 lp~--~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~ 439 (692)
+|. .+..+++|++|++++|..+..++ .++++++|++|++++|.+..+ |..++.+++|++|++++|.+..+|..
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-- 216 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI-- 216 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH--
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh--
Confidence 987 68899999999999986677765 699999999999999998865 78899999999999999998876641
Q ss_pred hhHHHhhhhhccccceeEEecCccc
Q 047027 440 ETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 440 ~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
.+..+. +|+.|.+..+.+..
T Consensus 217 ----~~~~~~-~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 217 ----FVDVTS-SVECLELRDTDLDT 236 (353)
T ss_dssp ----HHHHTT-TEEEEEEESCBCTT
T ss_pred ----hhhhcc-cccEEECCCCcccc
Confidence 244567 88888887655543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.1e-15 Score=154.24 Aligned_cols=146 Identities=23% Similarity=0.310 Sum_probs=95.6
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGM 382 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 382 (692)
+.++..++.+..+|..+ .++++.|++++|. +..++...+..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666666666543 3567777777775 5555555557777777777777777655 55677777777777777
Q ss_pred CCCCcCC-C-cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe
Q 047027 383 CGRLKRV-P-SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 383 c~~~~~l-p-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
|..+..+ | .+.++++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. .++.+. +|+.|.+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~-~L~~L~l~~ 162 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD------TFRDLG-NLTHLFLHG 162 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCT-TCCEEECCS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh------HhccCC-CccEEECCC
Confidence 6545555 3 577777777777777777655 34566777777777777777666531 245555 566655543
Q ss_pred c
Q 047027 460 F 460 (692)
Q Consensus 460 ~ 460 (692)
+
T Consensus 163 n 163 (285)
T 1ozn_A 163 N 163 (285)
T ss_dssp S
T ss_pred C
Confidence 3
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=3.9e-16 Score=157.48 Aligned_cols=167 Identities=28% Similarity=0.397 Sum_probs=135.3
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC-Ccc
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN-IEV 364 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~ 364 (692)
.+..+..+|.. ..+++++|+++++.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|. +..
T Consensus 19 ~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~ 95 (285)
T 1ozn_A 19 PQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRS 95 (285)
T ss_dssp CSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCC
T ss_pred CcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccc
Confidence 34445566653 35789999999999999987777799999999999996 666655556899999999999997 887
Q ss_pred C-CccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 365 L-PSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 365 l-p~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
+ |..+..+++|++|++++|......| .++++++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|..
T Consensus 96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---- 171 (285)
T 1ozn_A 96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER---- 171 (285)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT----
T ss_pred cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH----
Confidence 7 6779999999999999975444445 689999999999999999988865 78999999999999999877741
Q ss_pred HHHhhhhhccccceeEEecCc
Q 047027 442 VEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~ 462 (692)
.+..+. +|+.|.+..+.+
T Consensus 172 --~~~~l~-~L~~L~l~~n~l 189 (285)
T 1ozn_A 172 --AFRGLH-SLDRLLLHQNRV 189 (285)
T ss_dssp --TTTTCT-TCCEEECCSSCC
T ss_pred --HhcCcc-ccCEEECCCCcc
Confidence 356667 777777654433
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=5.1e-16 Score=158.36 Aligned_cols=163 Identities=22% Similarity=0.239 Sum_probs=131.6
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCC---chhHhhcCCCCcEEEccCCCCc
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRI---PECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
+..+..+|... .+++++|++++|.+..+|...+..+++|++|++++|. +..+ +..+ ..+++|++|++++|.+.
T Consensus 16 ~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~ 91 (306)
T 2z66_A 16 SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFNGVI 91 (306)
T ss_dssp SSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSCSEE
T ss_pred CCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCCccc
Confidence 44556667533 4689999999999999998887899999999999996 4433 4554 67999999999999999
Q ss_pred cCCccccCCCCCcEEEccCCCCCcCCC---cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCC--CChh
Q 047027 364 VLPSSVSDLTNLRSLLLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKK--FPAA 437 (692)
Q Consensus 364 ~lp~~i~~l~~L~~L~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~--lp~~ 437 (692)
.+|..+..+++|++|++++|. +..++ .+.++++|++|++++|.+... |..+..+++|++|++++|.+.. +|.
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~- 169 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD- 169 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-
T ss_pred cChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-
Confidence 999899999999999999964 55554 488999999999999988854 4567899999999999988764 454
Q ss_pred HHhhHHHhhhhhccccceeEEecCc
Q 047027 438 LRETVEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 438 l~~~~~~l~~L~~~L~~L~~~~~~~ 462 (692)
.+..++ +|+.|.+..+.+
T Consensus 170 ------~~~~l~-~L~~L~Ls~n~l 187 (306)
T 2z66_A 170 ------IFTELR-NLTFLDLSQCQL 187 (306)
T ss_dssp ------CCTTCT-TCCEEECTTSCC
T ss_pred ------HHhhCc-CCCEEECCCCCc
Confidence 466677 777777755444
No 65
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=4.9e-16 Score=152.32 Aligned_cols=108 Identities=19% Similarity=0.297 Sum_probs=66.9
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC-CccCCc-cccCCCCCcEEEccCCCCCcCCC--cccccccCCEE
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN-IEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYL 401 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L 401 (692)
+++.|++++|. +..+|...|..+++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+| .+.++++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 56666666665 555555445666666666666665 665543 45666666666666644555555 36666666777
Q ss_pred ecccCCCcccCccccCCCCCC---EEEccCC-CCCCCC
Q 047027 402 DLEATGIEEVPEGMEMLENLS---HLYLYLP-LLKKFP 435 (692)
Q Consensus 402 ~l~~~~l~~lp~~i~~l~~L~---~L~l~~~-~~~~lp 435 (692)
++++|.++.+|. ++.+++|+ +|++++| .++.+|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcC
Confidence 766666666665 56666666 6666666 555444
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=8.4e-18 Score=172.41 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMC 383 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c 383 (692)
+..+++.+.+...+..++..+++|+.|++++|. +..++...+..+++|++|++++|.++..++ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 334445555554444455567789999999986 666665556889999999999998886654 888899999999985
Q ss_pred CCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCcc
Q 047027 384 GRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 384 ~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
.+..+| ..++|++|++++|.+..++.. .+++|++|++++|.+..++.. .++.+. +|+.|.+..+.+.
T Consensus 91 -~l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~------~~~~l~-~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 91 -YVQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDL------DEGCRS-RVQYLDLKLNEID 157 (317)
T ss_dssp -EEEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGB------CTGGGS-SEEEEECTTSCCC
T ss_pred -cccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccch------hhhccC-CCCEEECCCCCCC
Confidence 344433 447899999999988877653 367899999998888876531 355666 7777776544443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=4.3e-15 Score=148.99 Aligned_cols=144 Identities=23% Similarity=0.269 Sum_probs=113.7
Q ss_pred ceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-c
Q 047027 289 RLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-S 367 (692)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~ 367 (692)
.+..+|... ..++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.++ .
T Consensus 18 ~l~~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 344555533 3578899999999888877666688899999999886 66666655688899999999999888765 5
Q ss_pred cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcc--cCccccCCCCCCEEEccCCCCCCCCh
Q 047027 368 SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEE--VPEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 368 ~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
.+.++++|++|++++|. +..++ .++++++|++|++++|.+.. +|..++.+++|++|++++|.+..++.
T Consensus 95 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred hhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 68889999999998864 44444 58889999999999998875 67888889999999999888887663
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=9.1e-15 Score=148.93 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=105.2
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.++++++|++.++.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 35678888888888777763 3467888888888885 666666 478888888888888887765 57788888888
Q ss_pred EccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 379 LLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 379 ~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
++++| .+..+|.++++++|++|++++|.+..++. ++.+++|++|++++|.+..++. +..+. +|+.|.+.
T Consensus 113 ~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------l~~l~-~L~~L~l~ 181 (308)
T 1h6u_A 113 DLTST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--------LANLS-KLTTLKAD 181 (308)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--------GTTCT-TCCEEECC
T ss_pred ECCCC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--------hcCCC-CCCEEECC
Confidence 88875 45666677788888888888888777765 7778888888888887776552 45555 55555554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=2.6e-15 Score=153.80 Aligned_cols=246 Identities=11% Similarity=0.077 Sum_probs=171.1
Q ss_pred ccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEEccCCCCCcCCCcccccccCCEEeccc
Q 047027 327 LSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEA 405 (692)
Q Consensus 327 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~ 405 (692)
++..++..+. +...+..++..+++|++|++++|.++.++ ..+..+++|++|++++|. +...+.++.+++|++|++++
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCS
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcC
Confidence 4455566654 55556666677889999999999999775 578999999999999964 44444588999999999999
Q ss_pred CCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeec
Q 047027 406 TGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLS 485 (692)
Q Consensus 406 ~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 485 (692)
|.++.+|. .++|++|++++|.+..++. ..+. +|+.|.+..+.+....
T Consensus 90 n~l~~l~~----~~~L~~L~l~~n~l~~~~~---------~~~~-~L~~L~l~~N~l~~~~------------------- 136 (317)
T 3o53_A 90 NYVQELLV----GPSIETLHAANNNISRVSC---------SRGQ-GKKNIYLANNKITMLR------------------- 136 (317)
T ss_dssp SEEEEEEE----CTTCCEEECCSSCCSEEEE---------CCCS-SCEEEECCSSCCCSGG-------------------
T ss_pred CccccccC----CCCcCEEECCCCccCCcCc---------cccC-CCCEEECCCCCCCCcc-------------------
Confidence 99887763 3899999999988875543 1233 4444444333322211
Q ss_pred ccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceeccccchhhhhhcCCcccCCccc-cccc
Q 047027 486 ASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNI-GKFS 564 (692)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l-~~l~ 564 (692)
+..+..+++|+.|+++++.... . ....+ ..++
T Consensus 137 --------------------------------------~~~~~~l~~L~~L~Ls~N~l~~--------~-~~~~~~~~l~ 169 (317)
T 3o53_A 137 --------------------------------------DLDEGCRSRVQYLDLKLNEIDT--------V-NFAELAASSD 169 (317)
T ss_dssp --------------------------------------GBCTGGGSSEEEEECTTSCCCE--------E-EGGGGGGGTT
T ss_pred --------------------------------------chhhhccCCCCEEECCCCCCCc--------c-cHHHHhhccC
Confidence 0113446788888888765321 0 01112 3567
Q ss_pred CceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCc
Q 047027 565 HDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEF 644 (692)
Q Consensus 565 ~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 644 (692)
+|++|++++|. ++.++... .+++|++|++++| .++.++. ....+++|+.|+++++ ++
T Consensus 170 -~L~~L~L~~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~----------------~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 170 -TLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGP----------------EFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp -TCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECG----------------GGGGGTTCSEEECTTS-CC
T ss_pred -cCCEEECCCCc-Cccccccc---ccccCCEEECCCC-cCCcchh----------------hhcccCcccEEECcCC-cc
Confidence 99999999864 56554332 4779999999995 6665542 2336899999999987 58
Q ss_pred ceeccCCceeecCCcceEEEcCCCCc-cccCCcccc
Q 047027 645 KSVCSNNGVLVCNSLQEIKVYGCPKL-KRLSLSLPL 679 (692)
Q Consensus 645 ~~~~~~~~~~~~~~L~~L~i~~C~~L-~~lP~~l~~ 679 (692)
..++. ....+++|+.|++.+++-. ..+|..+..
T Consensus 227 ~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 227 VLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp CEECT--TCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred cchhh--HhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 88876 6778899999999998765 345554433
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=7e-15 Score=149.76 Aligned_cols=125 Identities=27% Similarity=0.328 Sum_probs=107.0
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEe
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLD 402 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~ 402 (692)
.+++|+.|++.+|. +..++. +..+++|++|++++|.++.++. +..+++|++|++++| .+..+|.++++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCC-ccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEE
Confidence 57889999999996 677763 5889999999999999998877 999999999999996 477778899999999999
Q ss_pred cccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCc
Q 047027 403 LEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 403 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~ 462 (692)
+++|.+..+|. +..+++|++|++++|.+..++. ++.+. +|+.|.+..+.+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------l~~l~-~L~~L~l~~n~l 163 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--------LAGLT-NLQYLSIGNAQV 163 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--------GGGCT-TCCEEECCSSCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--------ccCCC-CccEEEccCCcC
Confidence 99999998875 8999999999999999987773 66777 777777754444
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=4.7e-15 Score=145.28 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=52.0
Q ss_pred CCcEEEccCCCCccCCc-cccCCCCCcEEEccCCCCCcCCC--cccccccCCEEeccc-CCCcccCc-cccCCCCCCEEE
Q 047027 351 GLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEA-TGIEEVPE-GMEMLENLSHLY 425 (692)
Q Consensus 351 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~ 425 (692)
+|++|++++|.++.+|. .+..+++|++|++++|..++.+| .++++++|++|++++ |.++.+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666544 45666666666666654355554 366666666666666 56666553 355666666666
Q ss_pred ccCCCCCCCC
Q 047027 426 LYLPLLKKFP 435 (692)
Q Consensus 426 l~~~~~~~lp 435 (692)
+++|.+..+|
T Consensus 112 l~~n~l~~lp 121 (239)
T 2xwt_C 112 IFNTGLKMFP 121 (239)
T ss_dssp EEEECCCSCC
T ss_pred CCCCCCcccc
Confidence 6666665555
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=3e-14 Score=142.26 Aligned_cols=128 Identities=27% Similarity=0.432 Sum_probs=59.3
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 381 (692)
.+.++++++.+..+|..+. ++++.|++++|. +..++...+..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCccCCCCC---CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3445555555544444322 344555555543 3444433334455555555555555444433 2445555555555
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCC
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp 435 (692)
+| .+..+| .+.++++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 43 233333 244455555555555554444432 344555555555555554444
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=9.6e-15 Score=151.76 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=84.9
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc-cCCc-cccCCCCCcEEEcc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE-VLPS-SVSDLTNLRSLLLG 381 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~L~l~ 381 (692)
+.++.+++.++.+|..+. ++++.|++++|. +..+|...|.++++|++|+|++|.+. .+|. .+.++.+|+.+...
T Consensus 12 ~~v~C~~~~Lt~iP~~l~---~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP---RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTCC---TTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCcC---CCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 456677777777776653 467788888775 67777766677888888888888764 4543 45677777665444
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccC-CCCCCCC
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYL-PLLKKFP 435 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~-~~~~~lp 435 (692)
.++.+..+| .+..+++|++|++++|.+..+|.. .....++..|++.. +.+..+|
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 445666665 477788888888888877776643 33445566666643 4444444
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=3.5e-14 Score=141.80 Aligned_cols=146 Identities=28% Similarity=0.476 Sum_probs=101.5
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..++++|++++|.+..++...+..+++|++|++++|. +..++..+|..+++|++|++++|.++.+
T Consensus 24 ~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 24 SSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp TTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred cCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 334455555433 3567778888777777776555677778888887775 6667766667777788888887777776
Q ss_pred Ccc-ccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCC
Q 047027 366 PSS-VSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 366 p~~-i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp 435 (692)
|.. +..+++|++|++++|. +..+| .++++++|++|++++|.+..+|.. +..+++|++|++++|.+..+|
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 543 5677778888887743 44444 467777888888888777777754 567777888887777766555
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=2.7e-14 Score=143.21 Aligned_cols=148 Identities=23% Similarity=0.281 Sum_probs=120.3
Q ss_pred EEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEccCC
Q 047027 305 RVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMC 383 (692)
Q Consensus 305 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c 383 (692)
.++..+..+..+|..+. +++++|++++|. +..++...+..+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP---FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC---CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 45555666777887653 579999999997 677776556899999999999999997754 6899999999999996
Q ss_pred CCCcCCC-cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCC--CChhHHhhHHHhhhhhccccceeEEe
Q 047027 384 GRLKRVP-SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKK--FPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 384 ~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~--lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
......| .++++++|++|++++|.+..++. .++++++|++|++++|.+.. +|. .++.+. +|+.|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-------~~~~l~-~L~~L~Ls~ 158 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLT-NLEHLDLSS 158 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCT-TCCEEECCS
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-------hhccCC-CCCEEECCC
Confidence 5444444 69999999999999999998775 68999999999999999886 565 577888 888888876
Q ss_pred cCccc
Q 047027 460 FKLKD 464 (692)
Q Consensus 460 ~~~~~ 464 (692)
+.+..
T Consensus 159 N~l~~ 163 (276)
T 2z62_A 159 NKIQS 163 (276)
T ss_dssp SCCCE
T ss_pred CCCCc
Confidence 55543
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=2.7e-15 Score=168.05 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=200.8
Q ss_pred ccccccEEEeecCCccccCC----CCCCCCCCccEEEccCCCccCCCc----hhHhhcCCCCcEEEccCCCCccCCcccc
Q 047027 299 WEENLERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNGLLQRIP----ECFFVHMHGLKVLNLSRTNIEVLPSSVS 370 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~lp~~i~ 370 (692)
.++++++|++++|.+..... .+...+++|+.|++++|. +..+. ..++..+++|++|++++|.+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 45788999998887543211 122357889999998886 33111 2334678999999999988888888888
Q ss_pred CCCCCcEEEccCCCCC---cCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhH-HHh
Q 047027 371 DLTNLRSLLLGMCGRL---KRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETV-EEA 445 (692)
Q Consensus 371 ~l~~L~~L~l~~c~~~---~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~-~~l 445 (692)
.+++|+.|+++.+... ...+ .++.+++|+.|++.++....+|..+..+++|++|+++.+.+.. ... .-+
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~------~~~~~~~ 314 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET------EDHCTLI 314 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH------HHHHHHH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH------HHHHHHH
Confidence 8999999999864333 2233 5778889999999887667788888888999999998877431 112 235
Q ss_pred hhhhccccceeEEecCccchhhhhhcccCCCcceEEEee-----------cccccccccccccccccchhhhhcccceEE
Q 047027 446 ASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWL-----------SASGKRRFLTHLIPKNYTHLEKLYKHKSVC 514 (692)
Q Consensus 446 ~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~ 514 (692)
..+. +|+.|.+. ....+...........+|+.+.+.- +...+.. .......+..++.+.
T Consensus 315 ~~~~-~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~--------~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 315 QKCP-NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG--------LIALAQGCQELEYMA 384 (592)
T ss_dssp TTCT-TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH--------HHHHHHHCTTCSEEE
T ss_pred HhCc-CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH--------HHHHHhhCccCeEEE
Confidence 6777 88888886 3332221111122345577777762 1111110 011123466678888
Q ss_pred eecccccCCCC-ccc-cccccccceecccc---chhhhhhcCCcccCCcc-cccccCceeEEEEeccCC-ccccchhchH
Q 047027 515 LFACKICEREE-PIV-LPEDVQFLQMNRVH---DVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGN-LKNLFSLRLL 587 (692)
Q Consensus 515 L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~---~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~-l~~l~~~~~l 587 (692)
+....+.+... .+. .+++|+.|.+.++. .++... .-.+++. +..++ +|++|++++|.+ +++.......
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p----~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP----LDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC----CHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHHHHH
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch----HHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHHHHH
Confidence 85544432111 122 36788888887543 221100 0001112 34567 899999987764 3332122222
Q ss_pred HhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEEEcCC
Q 047027 588 PALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIKVYGC 667 (692)
Q Consensus 588 ~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~i~~C 667 (692)
..+++|++|++++|. ++..... .....+++|++|+|++|+ +...........+++|+.|++++|
T Consensus 460 ~~~~~L~~L~L~~n~-l~~~~~~--------------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVG-ESDEGLM--------------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HSCTTCCEEEECSCC-SSHHHHH--------------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HhCccceEeeccCCC-CCHHHHH--------------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 347789999998864 4321100 112357889999999987 543211113446788999999998
Q ss_pred C
Q 047027 668 P 668 (692)
Q Consensus 668 ~ 668 (692)
.
T Consensus 524 ~ 524 (592)
T 3ogk_B 524 R 524 (592)
T ss_dssp B
T ss_pred c
Confidence 7
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=3.6e-14 Score=142.98 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=120.1
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.+.+++.+++.++.+..+|..+. ++++.|++++|. +..++...+..+++|++|++++|.++.++.. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 35678889999999998887764 678899999987 6666666668899999999999998887654 788999999
Q ss_pred EccCCCCCcCCC-cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcccccee
Q 047027 379 LLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 379 ~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
++++| .+..+| .+.++++|++|++++|.++.+|. .+..+++|++|++++|.+..+|.. .+..+. +|+.|.
T Consensus 83 ~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~-~L~~L~ 154 (290)
T 1p9a_G 83 DLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG------LLTPTP-KLEKLS 154 (290)
T ss_dssp ECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT------TTTTCT-TCCEEE
T ss_pred ECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh------hccccc-CCCEEE
Confidence 99984 677888 68889999999999999998874 578899999999999988888751 245566 676666
Q ss_pred EEecCc
Q 047027 457 GHFFKL 462 (692)
Q Consensus 457 ~~~~~~ 462 (692)
+..+.+
T Consensus 155 L~~N~l 160 (290)
T 1p9a_G 155 LANNNL 160 (290)
T ss_dssp CTTSCC
T ss_pred CCCCcC
Confidence 644333
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=4e-16 Score=169.04 Aligned_cols=338 Identities=15% Similarity=0.123 Sum_probs=167.4
Q ss_pred ccccccEEEeecCCcc-----ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCC----CCcEEEccCCCCc-----c
Q 047027 299 WEENLERVSLMRNNIE-----EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMH----GLKVLNLSRTNIE-----V 364 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~ 364 (692)
.++++++|++++|.+. .++..+ ..+++|++|++++|......+..++..++ +|++|++++|.++ .
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 3456677777776655 222222 25566777777776522222333334444 5777777777665 3
Q ss_pred CCccccCCCCCcEEEccCCCCCcCC-C-cc-----cccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCCC
Q 047027 365 LPSSVSDLTNLRSLLLGMCGRLKRV-P-SV-----AKLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 365 lp~~i~~l~~L~~L~l~~c~~~~~l-p-~~-----~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~ 432 (692)
+|..+..+++|++|++++|. +... + .+ ...++|++|++++|.+.. ++..+..+++|++|++++|.++
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 45566667777777777654 3221 1 11 124457777777776653 3444555667777777666553
Q ss_pred CCChhHHhhHHHhh-hhhccccceeEEecCccchhh--hh-hcccCCCcceEEEeecccccccccccccccccchhhhhc
Q 047027 433 KFPAALRETVEEAA-SLSDRLDSFEGHFFKLKDFNI--YV-KSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLY 508 (692)
Q Consensus 433 ~lp~~l~~~~~~l~-~L~~~L~~L~~~~~~~~~~~~--~~-~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 508 (692)
.... ......+. ... +|+.|.+..+.+..... .. .......++.+.+..+.+.+..... ........+.
T Consensus 184 ~~~~--~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~----l~~~~~~~~~ 256 (461)
T 1z7x_W 184 EAGV--RVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE----LCPGLLHPSS 256 (461)
T ss_dssp HHHH--HHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH----HHHHHTSTTC
T ss_pred hHHH--HHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH----HHHHHhcCCC
Confidence 2110 00111111 133 56666665554443210 00 1112344555554433222110000 0000011244
Q ss_pred ccceEEeecccccCC-----CCccccccccccceeccccchhhhhhcCCcccCCcc-c-ccccCceeEEEEeccCCcccc
Q 047027 509 KHKSVCLFACKICER-----EEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-I-GKFSHDLKVIRFIYCGNLKNL 581 (692)
Q Consensus 509 ~l~~l~L~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l-~~l~~~L~~L~l~~c~~l~~l 581 (692)
.++.+++.++.+... ...+..+++|+.|+++++....... ..+.. + ...+ +|++|++++|. ++..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~------~~l~~~l~~~~~-~L~~L~L~~n~-l~~~ 328 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA------RLLCETLLEPGC-QLESLWVKSCS-FTAA 328 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH------HHHHHHHTSTTC-CCCEEECTTSC-CBGG
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH------HHHHHHhccCCc-cceeeEcCCCC-CchH
Confidence 566777776655431 1123345677777777664211000 00100 1 1124 78888888875 3322
Q ss_pred c---hhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeee-eccCCcceeecCCCCCcc-----eeccCCc
Q 047027 582 F---SLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNT-VTLPRLKKLRFSKLPEFK-----SVCSNNG 652 (692)
Q Consensus 582 ~---~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~L~-----~~~~~~~ 652 (692)
. ....+..+++|++|++++| .+......... ... ...++|+.|++++|. +. .++. .
T Consensus 329 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~-----------~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~--~ 393 (461)
T 1z7x_W 329 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC-----------QGLGQPGSVLRVLWLADCD-VSDSSCSSLAA--T 393 (461)
T ss_dssp GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH-----------HHHTSTTCCCCEEECTTSC-CCHHHHHHHHH--H
T ss_pred HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH-----------HHHcCCCCceEEEECCCCC-CChhhHHHHHH--H
Confidence 1 0123456688888888886 45443211000 000 015688888888874 54 3443 4
Q ss_pred eeecCCcceEEEcCCC
Q 047027 653 VLVCNSLQEIKVYGCP 668 (692)
Q Consensus 653 ~~~~~~L~~L~i~~C~ 668 (692)
...+++|++|++++|+
T Consensus 394 l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHCCCCCEEECCSSS
T ss_pred HHhCCCccEEECCCCC
Confidence 5567888888888875
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.54 E-value=3.1e-16 Score=169.95 Aligned_cols=349 Identities=13% Similarity=0.085 Sum_probs=213.5
Q ss_pred ccccEEEeecCCccccCC-CCCCCCCCccEEEccCCCccC-----CCchhHhhcCCCCcEEEccCCCCccC-Cccc-cCC
Q 047027 301 ENLERVSLMRNNIEEIPS-NMSPHCEILSTLLLQRNGLLQ-----RIPECFFVHMHGLKVLNLSRTNIEVL-PSSV-SDL 372 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~l 372 (692)
+++++|+++++.+...+. .++..+++|++|++++|. +. .++.. +..+++|++|++++|.+... +..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 568899999998864331 224578899999999997 44 23333 47889999999999998642 2222 334
Q ss_pred C----CCcEEEccCCCCCc----CCC-cccccccCCEEecccCCCccc-Cccc-----cCCCCCCEEEccCCCCCCCChh
Q 047027 373 T----NLRSLLLGMCGRLK----RVP-SVAKLLALQYLDLEATGIEEV-PEGM-----EMLENLSHLYLYLPLLKKFPAA 437 (692)
Q Consensus 373 ~----~L~~L~l~~c~~~~----~lp-~~~~l~~L~~L~l~~~~l~~l-p~~i-----~~l~~L~~L~l~~~~~~~lp~~ 437 (692)
. +|++|++++|.... .+| .+.++++|++|++++|.+... +..+ ...++|++|++++|.++....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~- 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC- 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-
Confidence 4 79999999975332 446 688999999999999988632 2222 235689999999998764321
Q ss_pred HHhhHHHhhhhhccccceeEEecCccchhhh--hhcc--cCCCcceEEEeecccccccccccccccccchhhhhcccceE
Q 047027 438 LRETVEEAASLSDRLDSFEGHFFKLKDFNIY--VKSA--DGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSV 513 (692)
Q Consensus 438 l~~~~~~l~~L~~~L~~L~~~~~~~~~~~~~--~~~~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l 513 (692)
......+..++ +|+.|.+..+.+.+.... .... ....++.+.+..+.+..... ..-...+..+..++.+
T Consensus 160 -~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-----~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 160 -EPLASVLRAKP-DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-----RDLCGIVASKASLREL 232 (461)
T ss_dssp -HHHHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-----HHHHHHHHHCTTCCEE
T ss_pred -HHHHHHHhhCC-CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-----HHHHHHHHhCCCccEE
Confidence 22234567778 999999887665543211 1111 13356766665443322110 0012234556778888
Q ss_pred EeecccccCCCC------ccccccccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhch
Q 047027 514 CLFACKICEREE------PIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRL 586 (692)
Q Consensus 514 ~L~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~ 586 (692)
++.++.+..... .....++|+.|++.+|..... . ...++. +..++ +|++|++++|. +.+..+ ..
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~-~-----~~~l~~~l~~~~-~L~~L~Ls~n~-i~~~~~-~~ 303 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK-G-----CGDLCRVLRAKE-SLKELSLAGNE-LGDEGA-RL 303 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH-H-----HHHHHHHHHHCT-TCCEEECTTCC-CHHHHH-HH
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH-H-----HHHHHHHHhhCC-CcceEECCCCC-CchHHH-HH
Confidence 888876644211 122467888888888742211 0 001222 44567 89999998863 443211 12
Q ss_pred HHhh-----cCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCcee-----ec
Q 047027 587 LPAL-----QNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVL-----VC 656 (692)
Q Consensus 587 l~~L-----~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~-----~~ 656 (692)
+... ++|++|++++|. ++...... .+.....+++|+.|+++++ .+...... ... ..
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-----------l~~~l~~~~~L~~L~Ls~n-~i~~~~~~-~l~~~l~~~~ 369 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSH-----------FSSVLAQNRFLLELQISNN-RLEDAGVR-ELCQGLGQPG 369 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHH-----------HHHHHHHCSSCCEEECCSS-BCHHHHHH-HHHHHHTSTT
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHH-----------HHHHHhhCCCccEEEccCC-ccccccHH-HHHHHHcCCC
Confidence 2222 689999999974 33221000 0012335789999999988 45543210 111 15
Q ss_pred CCcceEEEcCCCCcc-----ccCCccccccCC
Q 047027 657 NSLQEIKVYGCPKLK-----RLSLSLPLLDNG 683 (692)
Q Consensus 657 ~~L~~L~i~~C~~L~-----~lP~~l~~L~~l 683 (692)
++|+.|++++|. +. .+|..+..+++|
T Consensus 370 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 370 SVLRVLWLADCD-VSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp CCCCEEECTTSC-CCHHHHHHHHHHHHHCCCC
T ss_pred CceEEEECCCCC-CChhhHHHHHHHHHhCCCc
Confidence 799999999994 55 577665444443
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2.4e-14 Score=155.41 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEe
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLD 402 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~ 402 (692)
.+++|+.|++++|. +..+++..+..+++|++|+|++|.++..++ ++.+++|++|++++| .+..+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~---~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL---VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE---ECTTCCEEE
T ss_pred cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC---CCCCcCEEE
Confidence 34466777777665 444544444666777777777776665443 666677777777764 333333 236667777
Q ss_pred cccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEec
Q 047027 403 LEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFF 460 (692)
Q Consensus 403 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~ 460 (692)
+++|.+..+|.. .+++|+.|++++|.+..+++ ..++.+. +|+.|.++.+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~------~~~~~l~-~L~~L~Ls~N 154 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRD------LDEGCRS-RVQYLDLKLN 154 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGG------BCGGGGS-SEEEEECTTS
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCc------hhhcCCC-CCCEEECCCC
Confidence 777766655542 35667777776666665432 1344555 5555555433
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=2.6e-15 Score=153.48 Aligned_cols=242 Identities=16% Similarity=0.132 Sum_probs=128.5
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCc-cCCCchhHh------hcCCCCcEEEccCCCCc-cCCccc--c
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGL-LQRIPECFF------VHMHGLKVLNLSRTNIE-VLPSSV--S 370 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~~~-~lp~~i--~ 370 (692)
.+++.+++.+|.+ .+|..+. ..++.|++++|.. ...+|..+. ..+++|++|++++|.++ .+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3455556666666 5554433 1266666766653 123444331 14677777777777766 456655 6
Q ss_pred CCCCCcEEEccCCCCCcCCC-ccccc-----ccCCEEecccCCCcccC-ccccCCCCCCEEEccCCCCCCCChhHHhhHH
Q 047027 371 DLTNLRSLLLGMCGRLKRVP-SVAKL-----LALQYLDLEATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRETVE 443 (692)
Q Consensus 371 ~l~~L~~L~l~~c~~~~~lp-~~~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~ 443 (692)
.+++|++|++++|. +...| .++.+ ++|++|++++|.+..+| ..++++++|++|++++|.+.... ....
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER----GLIS 193 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH----HHHH
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch----HHHH
Confidence 67777777777743 44446 45555 67777777777777665 56677777777777776643100 0011
Q ss_pred Hh--hhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeeccccc
Q 047027 444 EA--ASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKIC 521 (692)
Q Consensus 444 ~l--~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~ 521 (692)
.+ +.+. +|+.|.+..+.+........ ..+..+..++.++++++.+.
T Consensus 194 ~~~~~~l~-~L~~L~L~~N~l~~~~~~~~-------------------------------~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 194 ALCPLKFP-TLQVLALRNAGMETPSGVCS-------------------------------ALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp HSCTTSCT-TCCEEECTTSCCCCHHHHHH-------------------------------HHHHTTCCCSEEECTTSCCC
T ss_pred HHHhccCC-CCCEEECCCCcCcchHHHHH-------------------------------HHHhcCCCCCEEECCCCcCC
Confidence 22 5555 66666665444432211100 01122334555555555544
Q ss_pred CCC--CccccccccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhhcCcceeecc
Q 047027 522 ERE--EPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVE 599 (692)
Q Consensus 522 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~ 599 (692)
+.. .....+++|+.|+++++.. ..+|..-. + +|++|+++++ .++.+|. +..+++|++|+++
T Consensus 242 ~~~~~~~~~~l~~L~~L~Ls~N~l-----------~~ip~~~~-~-~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 242 DAAGAPSCDWPSQLNSLNLSFTGL-----------KQVPKGLP-A-KLSVLDLSYN-RLDRNPS---PDELPQVGNLSLK 304 (312)
T ss_dssp SSCCCSCCCCCTTCCEEECTTSCC-----------SSCCSSCC-S-EEEEEECCSS-CCCSCCC---TTTSCEEEEEECT
T ss_pred cccchhhhhhcCCCCEEECCCCcc-----------Chhhhhcc-C-CceEEECCCC-CCCCChh---HhhCCCCCEEecc
Confidence 432 1233456666666666542 12222111 3 6777777664 4444432 4455666666666
Q ss_pred c
Q 047027 600 G 600 (692)
Q Consensus 600 ~ 600 (692)
+
T Consensus 305 ~ 305 (312)
T 1wwl_A 305 G 305 (312)
T ss_dssp T
T ss_pred C
Confidence 6
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.5e-13 Score=135.54 Aligned_cols=167 Identities=24% Similarity=0.335 Sum_probs=133.1
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..+++.|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.+
T Consensus 22 ~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 22 QGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCccccc
Confidence 445556666543 3678999999999988877766788999999999986 6667766668899999999999999887
Q ss_pred Cc-cccCCCCCcEEEccCCCCCcCCC-c-ccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 366 PS-SVSDLTNLRSLLLGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 366 p~-~i~~l~~L~~L~l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
|. .+..+++|++|++++| .+..+| . ++++++|++|++++|.++.+|. .++.+++|++|++++|.+..+|.
T Consensus 99 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 172 (251)
T 3m19_A 99 PLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----- 172 (251)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-----
T ss_pred ChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-----
Confidence 64 4688999999999985 566666 3 7889999999999999998886 57889999999999999988774
Q ss_pred HHHhhhhhccccceeEEecCcc
Q 047027 442 VEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 442 ~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
..+..+. +|+.|.+..+.+.
T Consensus 173 -~~~~~l~-~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 -GAFDRLG-KLQTITLFGNQFD 192 (251)
T ss_dssp -TTTTTCT-TCCEEECCSCCBC
T ss_pred -HHHhCCC-CCCEEEeeCCcee
Confidence 2466777 8888887665543
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=3.7e-15 Score=161.75 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=158.5
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.++++++|++++|.+..++...+..+++|++|++++|. +...++ +..+++|++|++++|.++.+|.. ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 34589999999999998876666799999999999997 444444 58999999999999998877643 899999
Q ss_pred EccCCCCCcCCCcccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhhHHHhh-hhhcccccee
Q 047027 379 LLGMCGRLKRVPSVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAA-SLSDRLDSFE 456 (692)
Q Consensus 379 ~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~-~L~~~L~~L~ 456 (692)
++++|. +..+|. ..+++|++|++++|.+..+ |..++.+++|++|++++|.+..++. ..+. .+. +|+.|.
T Consensus 105 ~L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~l~~~l~-~L~~L~ 175 (487)
T 3oja_A 105 HAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------AELAASSD-TLEHLN 175 (487)
T ss_dssp ECCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG------GGGGGGTT-TCCEEE
T ss_pred ECcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh------HHHhhhCC-cccEEe
Confidence 999964 444441 2468899999999999866 5578899999999999999876432 1343 577 888887
Q ss_pred EEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccc
Q 047027 457 GHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFL 536 (692)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L 536 (692)
+..+.+..... ...+..++.++|+++.+.+.++.+..+++|+.|
T Consensus 176 Ls~N~l~~~~~------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L 219 (487)
T 3oja_A 176 LQYNFIYDVKG------------------------------------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI 219 (487)
T ss_dssp CTTSCCCEEEC------------------------------------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred cCCCccccccc------------------------------------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence 76555443211 001233556666666655544445556667777
Q ss_pred eeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccchhchHHhhcCcceeecc
Q 047027 537 QMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVE 599 (692)
Q Consensus 537 ~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~ 599 (692)
+++++.. ..+|. +..++ +|+.|++++++..... ....+..++.|+.+.+.
T Consensus 220 ~Ls~N~l-----------~~lp~~l~~l~-~L~~L~l~~N~l~c~~-~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKL-----------VLIEKALRFSQ-NLEHFDLRGNGFHCGT-LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCC-----------CEECTTCCCCT-TCCEEECTTCCBCHHH-HHHHHTTCHHHHHHHHH
T ss_pred EecCCcC-----------cccchhhccCC-CCCEEEcCCCCCcCcc-hHHHHHhCCCCcEEecc
Confidence 7766542 11222 44555 7777777665433111 11233444455555444
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.1e-14 Score=150.66 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=41.2
Q ss_pred CCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcC-CC-cccccccCCEEecccCCCc-ccCccccCCCCCCEEEc
Q 047027 350 HGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKR-VP-SVAKLLALQYLDLEATGIE-EVPEGMEMLENLSHLYL 426 (692)
Q Consensus 350 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~-lp-~~~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l 426 (692)
+++++|+++++.+...+..+..+++|++|++++|..... +| .+.++++|++|++++|.+. ..|..++++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455555555555554444445555555555555432211 33 3455555555555555544 34445555555555555
Q ss_pred cCC
Q 047027 427 YLP 429 (692)
Q Consensus 427 ~~~ 429 (692)
++|
T Consensus 150 ~~~ 152 (336)
T 2ast_B 150 SGC 152 (336)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=7.2e-15 Score=150.15 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=77.1
Q ss_pred cccccEEEeecCCcc-ccCCCCC-CCCCCccEEEccCCCccCCCchhHhhcC-----CCCcEEEccCCCCccCC-ccccC
Q 047027 300 EENLERVSLMRNNIE-EIPSNMS-PHCEILSTLLLQRNGLLQRIPECFFVHM-----HGLKVLNLSRTNIEVLP-SSVSD 371 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~~ 371 (692)
+.++++|++++|.+. .+|..++ ..+++|++|++++|. +..+|..+ ..+ ++|++|++++|.+..++ ..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 456666777766665 3555442 466667777776665 44444333 444 66677777766666554 55666
Q ss_pred CCCCcEEEccCCCCCcC--CC-cc--cccccCCEEecccCCCcccC---cc-ccCCCCCCEEEccCCCCCC
Q 047027 372 LTNLRSLLLGMCGRLKR--VP-SV--AKLLALQYLDLEATGIEEVP---EG-MEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 372 l~~L~~L~l~~c~~~~~--lp-~~--~~l~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~ 433 (692)
+++|++|++++|..... +| .+ +++++|++|++++|.++.+| .. +..+++|++|++++|.+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 66677777766543332 22 22 56666666666666666332 22 2455666666666666654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=9.3e-14 Score=144.28 Aligned_cols=237 Identities=17% Similarity=0.164 Sum_probs=167.7
Q ss_pred cEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEccCCCCCcCCC--cccccccCCE-Eec
Q 047027 328 STLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQY-LDL 403 (692)
Q Consensus 328 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~-L~l 403 (692)
++++.++++ +..+|..+ .+++++|+|++|.|+.+|+ .+.++++|++|++++|...+.+| .+.++++|++ +.+
T Consensus 12 ~~v~C~~~~-Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTT-CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCC-CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 567777775 88899765 4689999999999999986 48999999999999987777777 4889999876 555
Q ss_pred ccCCCcccC-ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe-cCccchhhhhhcccCCCcceEE
Q 047027 404 EATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF-FKLKDFNIYVKSADGRGSKDYC 481 (692)
Q Consensus 404 ~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~-~~~~~~~~~~~~~~~~~l~~l~ 481 (692)
.+|++..+| ..+..+++|++|++++|.+..+|.. ...... ++..+.+.. ..+....
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~------~~~~~~-~l~~l~l~~~~~i~~l~--------------- 145 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV------HKIHSL-QKVLLDIQDNINIHTIE--------------- 145 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC------TTCCBS-SCEEEEEESCTTCCEEC---------------
T ss_pred cCCcccccCchhhhhccccccccccccccccCCch------hhcccc-hhhhhhhcccccccccc---------------
Confidence 667999886 4578999999999999999877741 111111 222222211 0000000
Q ss_pred EeecccccccccccccccccchhhhhcccceEEeecccccCCCCccccccccccceeccccchhhhhhcCCcccCCcc-c
Q 047027 482 LWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICEREEPIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVN-I 560 (692)
Q Consensus 482 l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l 560 (692)
..........++.|.+.++.. ..++. .
T Consensus 146 -----------------------------------------~~~f~~~~~~l~~L~L~~N~i-----------~~i~~~~ 173 (350)
T 4ay9_X 146 -----------------------------------------RNSFVGLSFESVILWLNKNGI-----------QEIHNSA 173 (350)
T ss_dssp -----------------------------------------TTSSTTSBSSCEEEECCSSCC-----------CEECTTS
T ss_pred -----------------------------------------ccchhhcchhhhhhccccccc-----------cCCChhh
Confidence 000012224566777766542 22222 2
Q ss_pred ccccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCC
Q 047027 561 GKFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSK 640 (692)
Q Consensus 561 ~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 640 (692)
...+ +|++|.+.+++.++.+++ ..+.++++|++|++++ +.++.++.. .|.+|+.|.+.+
T Consensus 174 f~~~-~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~-N~l~~lp~~------------------~~~~L~~L~~l~ 232 (350)
T 4ay9_X 174 FNGT-QLDELNLSDNNNLEELPN-DVFHGASGPVILDISR-TRIHSLPSY------------------GLENLKKLRARS 232 (350)
T ss_dssp STTE-EEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTT-SCCCCCCSS------------------SCTTCCEEECTT
T ss_pred cccc-chhHHhhccCCcccCCCH-HHhccCcccchhhcCC-CCcCccChh------------------hhccchHhhhcc
Confidence 2345 899999998888998844 4678899999999999 578887632 588999999999
Q ss_pred CCCcceeccCCceeecCCcceEEEcC
Q 047027 641 LPEFKSVCSNNGVLVCNSLQEIKVYG 666 (692)
Q Consensus 641 ~~~L~~~~~~~~~~~~~~L~~L~i~~ 666 (692)
+.+++.+|. ...+++|+.+++.+
T Consensus 233 ~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 233 TYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCCCCC---TTTCCSCCEEECSC
T ss_pred CCCcCcCCC---chhCcChhhCcCCC
Confidence 999999984 55688999998854
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=1.1e-14 Score=163.15 Aligned_cols=228 Identities=14% Similarity=0.023 Sum_probs=140.1
Q ss_pred cccccEEEeecCCcccc-CCCCCCCCCCccEEEccCCCccCC-CchhHhhcCCCCcEEEccCCCCcc-----CCccccCC
Q 047027 300 EENLERVSLMRNNIEEI-PSNMSPHCEILSTLLLQRNGLLQR-IPECFFVHMHGLKVLNLSRTNIEV-----LPSSVSDL 372 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l 372 (692)
++++++|+++++.+... +..+...+++|++|++.+|..+.. ....++..+++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46789999999876531 222222578999999999954443 123444689999999999998653 33334467
Q ss_pred CCCcEEEccCCCCCcCCC--c----ccccccCCEEecccC-CCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHh
Q 047027 373 TNLRSLLLGMCGRLKRVP--S----VAKLLALQYLDLEAT-GIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEA 445 (692)
Q Consensus 373 ~~L~~L~l~~c~~~~~lp--~----~~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l 445 (692)
++|++|++++|. ..++ . +.++++|++|++++| .+..+|..+.++++|++|+++.+....-+..+......+
T Consensus 184 ~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 184 TSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp CCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred CcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 899999999876 2222 1 345799999999998 667788888899999999987654322222233334466
Q ss_pred hhhhcccccee-EEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccCCC
Q 047027 446 ASLSDRLDSFE-GHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICERE 524 (692)
Q Consensus 446 ~~L~~~L~~L~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~~~ 524 (692)
.+++ +|+.+. +............ ....+|+.+.+....+.+.. ....+..+..++.+.+.++......
T Consensus 262 ~~~~-~L~~Ls~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~l~~~~--------l~~~~~~~~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 262 SGCK-ELRCLSGFWDAVPAYLPAVY--SVCSRLTTLNLSYATVQSYD--------LVKLLCQCPKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp HTCT-TCCEEECCBTCCGGGGGGGH--HHHTTCCEEECTTCCCCHHH--------HHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hcCC-CcccccCCcccchhhHHHHH--HhhCCCCEEEccCCCCCHHH--------HHHHHhcCCCcCEEeCcCccCHHHH
Confidence 7777 777773 2211111111111 12355777766544322111 0112345667888999877211111
Q ss_pred Cc-cccccccccceecc
Q 047027 525 EP-IVLPEDVQFLQMNR 540 (692)
Q Consensus 525 ~~-~~~~~~L~~L~l~~ 540 (692)
.. ...+++|+.|++.+
T Consensus 331 ~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFP 347 (594)
T ss_dssp HHHHHHCTTCCEEEEEC
T ss_pred HHHHHhCCCCCEEEEec
Confidence 11 23467888888844
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=1.1e-14 Score=163.03 Aligned_cols=323 Identities=14% Similarity=0.121 Sum_probs=198.8
Q ss_pred cccEEEeecCCc-c--ccCCCCCCCCCCccEEEccCCCccCCC---chhHhhcCCCCcEEEccCCCCc-----cCCcccc
Q 047027 302 NLERVSLMRNNI-E--EIPSNMSPHCEILSTLLLQRNGLLQRI---PECFFVHMHGLKVLNLSRTNIE-----VLPSSVS 370 (692)
Q Consensus 302 ~l~~l~l~~~~~-~--~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~-----~lp~~i~ 370 (692)
++++|++.++.. . .++. +...+++|++|++++|.....- ...+...+++|++|+++++.++ .++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 478888877652 1 1111 1125788888998888632221 2234467888999999888875 3444556
Q ss_pred CCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCC----cccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHh
Q 047027 371 DLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGI----EEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEA 445 (692)
Q Consensus 371 ~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l----~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l 445 (692)
++++|++|++++|. +..+| .++++++|++|+++++.. ...+..+..+++|+.|.+.......+|. .+
T Consensus 218 ~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-------~~ 289 (592)
T 3ogk_B 218 NCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-------LF 289 (592)
T ss_dssp HCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-------GG
T ss_pred hCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-------HH
Confidence 78889999998864 44566 678888899998876422 2344567788889998887766666664 45
Q ss_pred hhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeec--------
Q 047027 446 ASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFA-------- 517 (692)
Q Consensus 446 ~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~-------- 517 (692)
..+. +|+.|.+..+.+.............+|+.+.+. ....+... ......+..++.+++.+
T Consensus 290 ~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l--------~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 290 PFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGL--------EVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHH--------HHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred hhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHH--------HHHHHhCCCCCEEEeecCccccccc
Confidence 6777 899998877664433221223445678888776 32221110 11224456688888884
Q ss_pred --ccccCCCC---ccccccccccceeccccchhhhhhcCCcccCCccccc-ccCceeEEEEec---cCCccccchh----
Q 047027 518 --CKICEREE---PIVLPEDVQFLQMNRVHDVASLNDVLPREQGLVNIGK-FSHDLKVIRFIY---CGNLKNLFSL---- 584 (692)
Q Consensus 518 --~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~-l~~~L~~L~l~~---c~~l~~l~~~---- 584 (692)
+....... ....+++|+.|.+. +..++. ..+..+.. ++ +|++|++++ |+.+++.|.-
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~--------~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVY-VSDITN--------ESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCH--------HHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred cccCccCHHHHHHHHhhCccCeEEEee-cCCccH--------HHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHH
Confidence 32221111 13347889999883 332221 11222333 67 999999985 5566654211
Q ss_pred chHHhhcCcceeecccccc-chhhhccCcchhhhhhcccceeeeeccCCcceeecCCCCCcceeccCCceeecCCcceEE
Q 047027 585 RLLPALQNLEVLKVEGCDS-IEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSVCSNNGVLVCNSLQEIK 663 (692)
Q Consensus 585 ~~l~~L~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~L~~L~ 663 (692)
..+.++++|++|++++|.. +...... .....+++|+.|.+++|. +...........+++|+.|+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~--------------~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLS--------------YIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHH--------------HHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEE
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHH--------------HHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeee
Confidence 1256789999999988764 2221100 011247899999999885 54321111335679999999
Q ss_pred EcCCC
Q 047027 664 VYGCP 668 (692)
Q Consensus 664 i~~C~ 668 (692)
+++|+
T Consensus 495 l~~n~ 499 (592)
T 3ogk_B 495 MRGCC 499 (592)
T ss_dssp EESCC
T ss_pred ccCCC
Confidence 99998
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=5.1e-13 Score=129.57 Aligned_cols=130 Identities=26% Similarity=0.440 Sum_probs=63.1
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 379 (692)
.++++|++++|.+..++...+..+++|+.|++++|. +..+|...|..+++|++|+|++|.++.+|.. +..+.+|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 445555555555554433333345555555555554 3444444444555555555555555544332 34455555555
Q ss_pred ccCCCCCcCCC-cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccCCCCC
Q 047027 380 LGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 380 l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 432 (692)
+++| .+..+| .+.++++|++|++++|.+..+|. .+..+++|+.|++.+|.+.
T Consensus 119 Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5542 334444 45555555555555555554443 2344555555555554443
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=6.3e-13 Score=132.73 Aligned_cols=152 Identities=25% Similarity=0.376 Sum_probs=111.7
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRS 377 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 377 (692)
.+++++.+++.++.+..++. ...+++|++|++++|. +..++ . +..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNK-LHDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSC-CCCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccc--cccCCCCcEEECCCCC-CCCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 35678888888888776653 2378888888888886 55554 2 47888888888888888877554 678888888
Q ss_pred EEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccc
Q 047027 378 LLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDS 454 (692)
Q Consensus 378 L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~ 454 (692)
|++++|. +..+| .++++++|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. .++.+. +|+.
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~-~L~~ 185 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG------VFDKLT-QLKD 185 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------TTTTCT-TCCE
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH------HhcCCc-cCCE
Confidence 8888864 44555 378888888888888888877765 47788888888888888777641 246666 7777
Q ss_pred eeEEecCcc
Q 047027 455 FEGHFFKLK 463 (692)
Q Consensus 455 L~~~~~~~~ 463 (692)
|.+..+.+.
T Consensus 186 L~L~~N~l~ 194 (272)
T 3rfs_A 186 LRLYQNQLK 194 (272)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCC
Confidence 766554443
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=3.8e-13 Score=135.49 Aligned_cols=168 Identities=23% Similarity=0.239 Sum_probs=137.3
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL 365 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 365 (692)
.+..+..+|... ..+++.|++++|.+..++...+..+++|+.|++++|. +..++.. ..+++|++|++++|.++.+
T Consensus 18 ~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 18 DKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp TTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEEECCCCcCCcC
Confidence 344556666543 3689999999999988766666689999999999997 6666653 6899999999999999999
Q ss_pred CccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhhH
Q 047027 366 PSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRETV 442 (692)
Q Consensus 366 p~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~~ 442 (692)
|..+..+++|++|++++| .+..+| .++++++|++|++++|.++.+|.+ +..+++|+.|++++|.++.+|..
T Consensus 93 ~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~----- 166 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG----- 166 (290)
T ss_dssp CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT-----
T ss_pred chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH-----
Confidence 998999999999999985 556665 589999999999999999988876 47899999999999999988861
Q ss_pred HHhhhhhccccceeEEecCccchh
Q 047027 443 EEAASLSDRLDSFEGHFFKLKDFN 466 (692)
Q Consensus 443 ~~l~~L~~~L~~L~~~~~~~~~~~ 466 (692)
.+..+. +|+.|.+..+.+...+
T Consensus 167 -~~~~l~-~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 167 -LLNGLE-NLDTLLLQENSLYTIP 188 (290)
T ss_dssp -TTTTCT-TCCEEECCSSCCCCCC
T ss_pred -HhcCcC-CCCEEECCCCcCCccC
Confidence 346788 8888888776665443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=3.6e-13 Score=127.39 Aligned_cols=150 Identities=13% Similarity=0.208 Sum_probs=124.9
Q ss_pred cccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc-CCccccCCCCCc
Q 047027 298 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV-LPSSVSDLTNLR 376 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 376 (692)
..++++++|+++++.+..+| .+ ..+++|++|++++|. +..++ . +..+++|++|++++|.++. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~-~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIH-ATNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCC-CSCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCC-CCcch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44678999999999999887 44 489999999999994 66655 3 5889999999999999885 678899999999
Q ss_pred EEEccCCCCCcCCC-cccccccCCEEecccCC-CcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccc
Q 047027 377 SLLLGMCGRLKRVP-SVAKLLALQYLDLEATG-IEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDS 454 (692)
Q Consensus 377 ~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~ 454 (692)
+|++++|......| .++++++|++|++++|. +..+| .+..+++|++|++++|.+..++ .+..++ +|+.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--------~l~~l~-~L~~ 185 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--------GIEDFP-KLNQ 185 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--------TGGGCS-SCCE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--------HhccCC-CCCE
Confidence 99999976554456 79999999999999997 88887 6899999999999999998877 477888 8888
Q ss_pred eeEEecCc
Q 047027 455 FEGHFFKL 462 (692)
Q Consensus 455 L~~~~~~~ 462 (692)
|.+..+.+
T Consensus 186 L~l~~N~i 193 (197)
T 4ezg_A 186 LYAFSQTI 193 (197)
T ss_dssp EEECBC--
T ss_pred EEeeCccc
Confidence 88865543
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=6.2e-13 Score=134.04 Aligned_cols=149 Identities=20% Similarity=0.256 Sum_probs=107.9
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.+++++.|+++++.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.++.+| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCEE
Confidence 35667788888887777653 3467788888888876 566665 477888888888888877765 37778888888
Q ss_pred EccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 379 LLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 379 ~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
++++| .+..++.++.+++|++|++++|.+..+ ..++.+++|++|++++|.+..++. +..+. +|+.|.+.
T Consensus 118 ~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--------l~~l~-~L~~L~L~ 186 (291)
T 1h6t_A 118 SLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--------LAGLT-KLQNLYLS 186 (291)
T ss_dssp ECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--------GTTCT-TCCEEECC
T ss_pred ECCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--------hcCCC-ccCEEECC
Confidence 88875 456666777788888888888877776 467778888888888887776652 56666 77777776
Q ss_pred ecCccc
Q 047027 459 FFKLKD 464 (692)
Q Consensus 459 ~~~~~~ 464 (692)
.+.+..
T Consensus 187 ~N~i~~ 192 (291)
T 1h6t_A 187 KNHISD 192 (291)
T ss_dssp SSCCCB
T ss_pred CCcCCC
Confidence 554443
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=2.4e-14 Score=148.03 Aligned_cols=128 Identities=13% Similarity=0.123 Sum_probs=105.0
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCC-CchhHhhcCCCCcEEEccCCCCc-cCCccccCCCCCcEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQR-IPECFFVHMHGLKVLNLSRTNIE-VLPSSVSDLTNLRSL 378 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 378 (692)
.+++.+++.++.+...+...+ .+++|+.|++++|..... ++. .+..+++|++|++++|.++ ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 568889999998887666665 789999999999973223 443 4588999999999999987 567788899999999
Q ss_pred EccCCCCCcC--CC-cccccccCCEEecccC-CCcc--cCccccCCC-CCCEEEccCCC
Q 047027 379 LLGMCGRLKR--VP-SVAKLLALQYLDLEAT-GIEE--VPEGMEMLE-NLSHLYLYLPL 430 (692)
Q Consensus 379 ~l~~c~~~~~--lp-~~~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~ 430 (692)
++++|..+.. +| .+.++++|++|++++| .++. ++..+..++ +|++|++++|.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 9999866663 56 5888999999999999 8884 677788899 99999998874
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=7.5e-13 Score=127.50 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=63.7
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 379 (692)
.+++.|++++|.+..++...+..+++|+.|++++|. +..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 345555555555555544444455555555555554 3333222335555555555555555555443 34455555555
Q ss_pred ccCCCCCcCC-C-cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCC
Q 047027 380 LGMCGRLKRV-P-SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLL 431 (692)
Q Consensus 380 l~~c~~~~~l-p-~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 431 (692)
+++|. +..+ | .+.++++|++|++++|.++.+|.+ +..+++|++|++++|.+
T Consensus 111 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55532 2222 2 355555555555555555544432 44455555555555544
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.3e-12 Score=128.82 Aligned_cols=151 Identities=26% Similarity=0.377 Sum_probs=126.4
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 379 (692)
...++++++++.+..+|..+. ++++.|++++|. +..++...+..+++|++|++++|.++.++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456789999999999998764 589999999997 666766666899999999999999997754 578999999999
Q ss_pred ccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcccccee
Q 047027 380 LGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 380 l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
+++| .+..+| .++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+|. ..++.+. +|+.|.
T Consensus 90 L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~-~L~~L~ 161 (251)
T 3m19_A 90 LANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA------GAFDKLT-NLQTLS 161 (251)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCT-TCCEEE
T ss_pred CCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH------HHcCcCc-CCCEEE
Confidence 9996 455666 589999999999999999998876 5889999999999999998885 1366777 888887
Q ss_pred EEecCcc
Q 047027 457 GHFFKLK 463 (692)
Q Consensus 457 ~~~~~~~ 463 (692)
+..+.+.
T Consensus 162 L~~N~l~ 168 (251)
T 3m19_A 162 LSTNQLQ 168 (251)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 7655544
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=5.8e-14 Score=157.21 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=79.1
Q ss_pred ccccccEEEeecCCccccC----CCCCCCCCCccEEEccCCCccCCCc----hhHhhcCCCCcEEEccCCC-CccCCccc
Q 047027 299 WEENLERVSLMRNNIEEIP----SNMSPHCEILSTLLLQRNGLLQRIP----ECFFVHMHGLKVLNLSRTN-IEVLPSSV 369 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~lp~~i 369 (692)
.++++++|++++|.+.... ..+...+++|++|++++|. ..+. ..++..+++|++|++++|. +..+|..+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 4566777777776643211 1122356677777777764 1222 1223456777777777763 44556666
Q ss_pred cCCCCCcEEEccCCCC------CcCCC-cccccccCCEE-ecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhh
Q 047027 370 SDLTNLRSLLLGMCGR------LKRVP-SVAKLLALQYL-DLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRET 441 (692)
Q Consensus 370 ~~l~~L~~L~l~~c~~------~~~lp-~~~~l~~L~~L-~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~ 441 (692)
..+++|+.|++..|.. +..++ .++++++|+.| .+.+.....+|..+..+++|++|+++.+.+. . ..
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~---~---~~ 305 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ---S---YD 305 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC---H---HH
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC---H---HH
Confidence 6677777777655432 11122 34445555555 3333222344444445566677776665533 1 11
Q ss_pred HH-HhhhhhccccceeEEec
Q 047027 442 VE-EAASLSDRLDSFEGHFF 460 (692)
Q Consensus 442 ~~-~l~~L~~~L~~L~~~~~ 460 (692)
.. -+..++ +|+.|.+..+
T Consensus 306 l~~~~~~~~-~L~~L~l~~~ 324 (594)
T 2p1m_B 306 LVKLLCQCP-KLQRLWVLDY 324 (594)
T ss_dssp HHHHHTTCT-TCCEEEEEGG
T ss_pred HHHHHhcCC-CcCEEeCcCc
Confidence 11 134555 6666666543
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.1e-12 Score=127.13 Aligned_cols=149 Identities=26% Similarity=0.315 Sum_probs=126.5
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 381 (692)
.+.++.+++.+..+|..+. ++|+.|++++|. +..++...+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4578888999999998754 789999999997 6666555568999999999999999988755 6899999999999
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
+| .+..+| .+..+++|++|++++|.++.+|.++..+++|++|++++|.+..+|. ..+..+. +|+.|.+..
T Consensus 97 ~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~-~L~~L~l~~ 168 (229)
T 3e6j_A 97 TN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH------GAFDRLS-SLTHAYLFG 168 (229)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT------TTTTTCT-TCCEEECTT
T ss_pred CC-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH------HHHhCCC-CCCEEEeeC
Confidence 96 566776 4789999999999999999999999999999999999999998885 2467777 888887765
Q ss_pred cCcc
Q 047027 460 FKLK 463 (692)
Q Consensus 460 ~~~~ 463 (692)
+.+.
T Consensus 169 N~~~ 172 (229)
T 3e6j_A 169 NPWD 172 (229)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 5443
No 99
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=2.1e-12 Score=128.95 Aligned_cols=162 Identities=28% Similarity=0.378 Sum_probs=133.5
Q ss_pred ceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc
Q 047027 289 RLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS 368 (692)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 368 (692)
.+..++ ....++++++|++++|.+..++ . +..+++|++|++++|. +..++...+..+++|++|++++|.++.+|..
T Consensus 52 ~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 127 (272)
T 3rfs_A 52 DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-A-LKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127 (272)
T ss_dssp CCCCCT-TGGGCTTCCEEECTTSCCCCCG-G-GTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred Cccccc-ccccCCCCcEEECCCCCCCCch-h-hcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHH
Confidence 344444 3566789999999999998765 2 3489999999999997 7778877778999999999999999988655
Q ss_pred -ccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhhHHH
Q 047027 369 -VSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRETVEE 444 (692)
Q Consensus 369 -i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~ 444 (692)
++.+++|++|++++| .+..+| .++++++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|. ..
T Consensus 128 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~ 200 (272)
T 3rfs_A 128 VFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD------GV 200 (272)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------TT
T ss_pred HhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH------HH
Confidence 789999999999996 566666 378999999999999999988865 5889999999999999988875 13
Q ss_pred hhhhhccccceeEEecCc
Q 047027 445 AASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 445 l~~L~~~L~~L~~~~~~~ 462 (692)
+..+. +|+.|.+..+.+
T Consensus 201 ~~~l~-~L~~L~l~~N~~ 217 (272)
T 3rfs_A 201 FDRLT-SLQYIWLHDNPW 217 (272)
T ss_dssp TTTCT-TCCEEECCSSCB
T ss_pred HhCCc-CCCEEEccCCCc
Confidence 67788 888888765543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=125.33 Aligned_cols=148 Identities=18% Similarity=0.249 Sum_probs=91.4
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCC-chhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEcc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRI-PECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLG 381 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~ 381 (692)
+.++++++.+..+|..+. +.++.|++++|. +..+ +..+|..+++|++|++++|.++.++. .+.++.+|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 466666666666665543 345667777765 4444 33445667777777777777666543 56667777777777
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
+|. +..+| .++++++|++|++++|.+..+ |..+..+++|++|++++|.+..++. ..+..+. +|+.|.+.
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~-~L~~L~L~ 161 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP------GAFDTLH-SLSTLNLL 161 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT------TTTTTCT-TCCEEECC
T ss_pred CCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH------HHhcCCC-CCCEEEec
Confidence 643 34444 366677777777777766655 4556667777777777777666632 1455666 66666665
Q ss_pred ecCcc
Q 047027 459 FFKLK 463 (692)
Q Consensus 459 ~~~~~ 463 (692)
.+.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 54443
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=1.7e-12 Score=135.32 Aligned_cols=168 Identities=26% Similarity=0.277 Sum_probs=133.5
Q ss_pred ecCcceeecCCcccccccccEEEeecCCccccCCCCCC-CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 285 KAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSP-HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
-.+..+..+|... ...++.|++++|.+..++...+. .+++|+.|++++|. +..++...|..+++|++|+|++|.++
T Consensus 25 c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 25 CSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp CCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCC
Confidence 3445566677543 45689999999999999888776 89999999999997 77777766789999999999999999
Q ss_pred cCCc-cccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccc----cCCCCCCEEEccCCCCCCCChh
Q 047027 364 VLPS-SVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGM----EMLENLSHLYLYLPLLKKFPAA 437 (692)
Q Consensus 364 ~lp~-~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~lp~~ 437 (692)
.+|. .+..+.+|++|++++|......| .+.++++|++|++++|.+..+|..+ ..+++|++|++++|.+..+|.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~- 180 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL- 180 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-
Confidence 8865 58899999999999965444445 6999999999999999999999776 579999999999999999884
Q ss_pred HHhhHHHhhhhhcc--ccceeEEecCc
Q 047027 438 LRETVEEAASLSDR--LDSFEGHFFKL 462 (692)
Q Consensus 438 l~~~~~~l~~L~~~--L~~L~~~~~~~ 462 (692)
..+..+. . ++.|.+..+.+
T Consensus 181 -----~~~~~l~-~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 181 -----TDLQKLP-AWVKNGLYLHNNPL 201 (361)
T ss_dssp -----HHHHHSC-HHHHTTEECCSSCE
T ss_pred -----HHhhhcc-HhhcceEEecCCCc
Confidence 2344444 3 35666654444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.41 E-value=2.7e-12 Score=129.41 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=135.9
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..++ ....++++++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.++.++
T Consensus 55 ~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~i~~~~ 128 (291)
T 1h6t_A 55 NSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNGISDIN 128 (291)
T ss_dssp TSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSCCCCCG
T ss_pred CCCcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCCcCCCCh
Confidence 34444554 35667899999999999998876 4589999999999997 666665 589999999999999999874
Q ss_pred ccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhh
Q 047027 367 SSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAA 446 (692)
Q Consensus 367 ~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~ 446 (692)
.+..+++|++|++++| .+..++.++++++|++|++++|.+..++. +..+++|++|++++|.++.+| .+.
T Consensus 129 -~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--------~l~ 197 (291)
T 1h6t_A 129 -GLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--------ALA 197 (291)
T ss_dssp -GGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--------GGT
T ss_pred -hhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--------hhc
Confidence 6899999999999995 56667889999999999999999998876 999999999999999999877 478
Q ss_pred hhhccccceeEEecCccc
Q 047027 447 SLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 447 ~L~~~L~~L~~~~~~~~~ 464 (692)
.+. +|+.|.+..+.+..
T Consensus 198 ~l~-~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 198 GLK-NLDVLELFSQECLN 214 (291)
T ss_dssp TCT-TCSEEEEEEEEEEC
T ss_pred cCC-CCCEEECcCCcccC
Confidence 888 99999987765544
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=4.5e-12 Score=121.03 Aligned_cols=141 Identities=26% Similarity=0.401 Sum_probs=110.9
Q ss_pred ceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc
Q 047027 289 RLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS 368 (692)
Q Consensus 289 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 368 (692)
.+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.+|..
T Consensus 18 ~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 18 GRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp CCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 34445543 24578899999998888887777788899999998886 6777777678888999999999988877654
Q ss_pred -ccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCC
Q 047027 369 -VSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 369 -i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 433 (692)
+..+++|++|++++| .+..+| .++++++|++|++++|.++.+|.. +..+++|++|++++|.+..
T Consensus 95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 678889999999885 455666 378889999999999888887765 6788899999998887653
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=7.5e-13 Score=134.99 Aligned_cols=133 Identities=23% Similarity=0.164 Sum_probs=67.7
Q ss_pred cccEEEeecCCccc-cCCCCC-CCCCCccEEEccCCCccCCCc---hhHhhcCCCCcEEEccCCCCccCC-ccccCCCCC
Q 047027 302 NLERVSLMRNNIEE-IPSNMS-PHCEILSTLLLQRNGLLQRIP---ECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNL 375 (692)
Q Consensus 302 ~l~~l~l~~~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L 375 (692)
++++|++++|.+.. .|..++ ..+++|++|++++|......+ ...+..+++|++|++++|.+..++ ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 45666666666553 222221 355666666666665322222 111234566666666666655443 445566666
Q ss_pred cEEEccCCCCCcC--CC---cccccccCCEEecccCCCcccCcc----ccCCCCCCEEEccCCCCCCC
Q 047027 376 RSLLLGMCGRLKR--VP---SVAKLLALQYLDLEATGIEEVPEG----MEMLENLSHLYLYLPLLKKF 434 (692)
Q Consensus 376 ~~L~l~~c~~~~~--lp---~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~l 434 (692)
++|++++|..... ++ .++.+++|++|++++|+++.+|.. ++.+++|++|++++|.+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 6666666443221 21 234556666666666655544432 34555666666666555443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.9e-12 Score=124.72 Aligned_cols=146 Identities=20% Similarity=0.236 Sum_probs=121.8
Q ss_pred ecCcceeecCCcccccccccEEEeecCCcccc-CCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 285 KAGLRLLKFPGEQEWEENLERVSLMRNNIEEI-PSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
-.+..+..+|... ...++.|++++|.+..+ +...+..+++|+.|++++|. +..++...|..+++|++|++++|.++
T Consensus 18 ~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 18 CSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp CCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccC
Confidence 3445566677543 45678999999999987 44556789999999999997 77777766799999999999999999
Q ss_pred cCCcc-ccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCC
Q 047027 364 VLPSS-VSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 364 ~lp~~-i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~ 433 (692)
.+|.. +..+++|++|++++|......| .+.++++|++|++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 88654 8899999999999965444445 699999999999999999987 6788999999999999998754
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=1.9e-12 Score=124.63 Aligned_cols=148 Identities=26% Similarity=0.380 Sum_probs=126.0
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGM 382 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 382 (692)
+.++.+++.+..+|..+. ++++.|++++|. +..++...|..+++|++|++++|.++.+ |..+.++.+|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 578888999999988654 689999999997 7777776678999999999999999977 77899999999999999
Q ss_pred CCCCcCCC-c-ccccccCCEEecccCCCcccC-ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe
Q 047027 383 CGRLKRVP-S-VAKLLALQYLDLEATGIEEVP-EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 383 c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
| .+..+| . +.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+|.. .+..+. +|+.|.+..
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~-~L~~L~L~~ 161 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG------TFSPLR-AIQTMHLAQ 161 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCT-TCCEEECCS
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH------HHhCCC-CCCEEEeCC
Confidence 5 567777 3 789999999999999999775 5688999999999999999988851 366777 888888765
Q ss_pred cCcc
Q 047027 460 FKLK 463 (692)
Q Consensus 460 ~~~~ 463 (692)
+.+.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 5543
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.39 E-value=1.7e-12 Score=122.66 Aligned_cols=142 Identities=15% Similarity=0.281 Sum_probs=117.8
Q ss_pred cCcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc-
Q 047027 286 AGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV- 364 (692)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 364 (692)
.+..+..++ ....++++++|++++|.+..++ . +..+++|++|++++|......+.. +..+++|++|++++|.++.
T Consensus 52 ~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 52 ANINVTDLT-GIEYAHNIKDLTINNIHATNYN-P-ISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp ESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-G-GTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGG
T ss_pred cCCCccChH-HHhcCCCCCEEEccCCCCCcch-h-hhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcH
Confidence 344455666 5677889999999999887664 3 347999999999999743334544 4899999999999999985
Q ss_pred CCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCC
Q 047027 365 LPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 365 lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 432 (692)
.|..++.+++|++|++++|..+..+|.+..+++|++|++++|.+..++ .+..+++|++|++++|.++
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred hHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 677899999999999999876888889999999999999999999888 7899999999999999875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.9e-12 Score=141.91 Aligned_cols=149 Identities=21% Similarity=0.258 Sum_probs=102.8
Q ss_pred ccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEE
Q 047027 299 WEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSL 378 (692)
Q Consensus 299 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 378 (692)
.+.+++.|+++++.+..++. +..+++|+.|++++|. +..+++ +..+++|++|+|++|.+..+| .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEE
Confidence 34567777777777776653 2367777777777775 555555 467777777777777777665 57777777777
Q ss_pred EccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEE
Q 047027 379 LLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGH 458 (692)
Q Consensus 379 ~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~ 458 (692)
++++| .+..+|.+..+++|+.|++++|.+..+ ..++.+++|+.|++++|.+..++. +..+. +|+.|.+.
T Consensus 115 ~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--------l~~l~-~L~~L~Ls 183 (605)
T 1m9s_A 115 SLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--------LAGLT-KLQNLYLS 183 (605)
T ss_dssp ECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--------GTTCT-TCCEEECC
T ss_pred EecCC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--------hccCC-CCCEEECc
Confidence 77774 455566677777777777777777766 457777777777777777766552 56666 77777766
Q ss_pred ecCccc
Q 047027 459 FFKLKD 464 (692)
Q Consensus 459 ~~~~~~ 464 (692)
.+.+..
T Consensus 184 ~N~i~~ 189 (605)
T 1m9s_A 184 KNHISD 189 (605)
T ss_dssp SSCCCB
T ss_pred CCCCCC
Confidence 555444
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=3.1e-12 Score=126.83 Aligned_cols=150 Identities=18% Similarity=0.201 Sum_probs=126.5
Q ss_pred ccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCc
Q 047027 297 QEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLR 376 (692)
Q Consensus 297 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 376 (692)
...++++++|++++|.+..++ .+ ..+++|+.|++++|. +..++. +..+++|++|++++|.++.+|.... .+|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCC
T ss_pred hhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--Cccc
Confidence 345678999999999999887 33 488999999999996 777776 5899999999999999998875443 8999
Q ss_pred EEEccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhcccccee
Q 047027 377 SLLLGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFE 456 (692)
Q Consensus 377 ~L~l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~ 456 (692)
+|++++| .+..+|.++++++|++|++++|.++.+| .++.+++|++|++++|.+..++ .+..+. +|+.|.
T Consensus 110 ~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~-~L~~L~ 178 (263)
T 1xeu_A 110 RLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTG--------GLTRLK-KVNWID 178 (263)
T ss_dssp EEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCT--------TSTTCC-CCCEEE
T ss_pred EEEccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchH--------HhccCC-CCCEEe
Confidence 9999995 6777788999999999999999999887 6899999999999999998764 577788 888888
Q ss_pred EEecCccc
Q 047027 457 GHFFKLKD 464 (692)
Q Consensus 457 ~~~~~~~~ 464 (692)
+..+.+..
T Consensus 179 l~~N~~~~ 186 (263)
T 1xeu_A 179 LTGQKCVN 186 (263)
T ss_dssp EEEEEEEC
T ss_pred CCCCcccC
Confidence 87665543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=1.1e-12 Score=145.14 Aligned_cols=125 Identities=20% Similarity=0.333 Sum_probs=98.3
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEe
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLD 402 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~ 402 (692)
.+++|+.|++++|. +..++. +..+++|+.|+|++|.+..+|+ +..+++|++|+|++| .+..+|.++.+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCC-CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEE
Confidence 56778888888886 666664 4788999999999998888775 888899999999885 566777888889999999
Q ss_pred cccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCc
Q 047027 403 LEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 403 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~ 462 (692)
+++|.+..+| .+..+++|+.|++++|.+..++ .+..+. +|+.|.+..+.+
T Consensus 116 Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~--------~l~~l~-~L~~L~Ls~N~l 165 (605)
T 1m9s_A 116 LEHNGISDIN-GLVHLPQLESLYLGNNKITDIT--------VLSRLT-KLDTLSLEDNQI 165 (605)
T ss_dssp CTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--------GGGSCT-TCSEEECCSSCC
T ss_pred ecCCCCCCCc-cccCCCccCEEECCCCccCCch--------hhcccC-CCCEEECcCCcC
Confidence 9998888764 5888889999999888887664 466666 777776654433
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=1.4e-11 Score=117.45 Aligned_cols=146 Identities=26% Similarity=0.390 Sum_probs=122.7
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEccC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLGM 382 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 382 (692)
+.++..++.+..+|..+. ++++.|++++|. +..++...+..+++|++|++++|.++.+|.. +..+.+|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP---AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCCC---CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 567888888888887653 589999999997 6778877778999999999999999988765 68899999999999
Q ss_pred CCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe
Q 047027 383 CGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 383 c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
| .+..+| .++++++|++|++++|.+..+|.. +.++++|++|++++|.+..+|.. .+..+. +|+.|.+..
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~-~L~~L~l~~ 157 (208)
T 2o6s_A 86 N-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLT-SLQYIWLHD 157 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCT-TCCEEECCS
T ss_pred C-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH------HhccCC-CccEEEecC
Confidence 6 566666 379999999999999999988875 68899999999999999888751 356777 888887765
Q ss_pred cC
Q 047027 460 FK 461 (692)
Q Consensus 460 ~~ 461 (692)
+.
T Consensus 158 N~ 159 (208)
T 2o6s_A 158 NP 159 (208)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.7e-12 Score=117.98 Aligned_cols=132 Identities=24% Similarity=0.224 Sum_probs=102.9
Q ss_pred cccccEEEeecCCcc--ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc-CCccccCCCCCc
Q 047027 300 EENLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV-LPSSVSDLTNLR 376 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 376 (692)
.+++++|++++|.+. .+|..+ ..+++|++|++++|. +..+ . .+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVG-LISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSC-CCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCC-CCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 367888888888887 777654 478888888888886 5555 3 34788888888888888886 666666788888
Q ss_pred EEEccCCCCCcCCC---cccccccCCEEecccCCCcccCc----cccCCCCCCEEEccCCCCCCCCh
Q 047027 377 SLLLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEVPE----GMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 377 ~L~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+|++++| .+..+| .++.+++|++|++++|.+..+|. .+..+++|++|++..+....+|.
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8888886 455554 57788888888888888888776 67888888888888888777764
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=6.1e-13 Score=140.27 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=17.6
Q ss_pred ccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCC
Q 047027 394 KLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLL 431 (692)
Q Consensus 394 ~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 431 (692)
++++|++|++++|.+.. +|..+.++++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 44444444444444433 344444444555555544443
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=7.3e-13 Score=139.65 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=90.5
Q ss_pred ccccccccEEEeecCCccc-----cCCCCCCCCCCccEEEccCCCc---cCCCchhH------hhcCCCCcEEEccCCCC
Q 047027 297 QEWEENLERVSLMRNNIEE-----IPSNMSPHCEILSTLLLQRNGL---LQRIPECF------FVHMHGLKVLNLSRTNI 362 (692)
Q Consensus 297 ~~~~~~l~~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~------~~~l~~L~~L~l~~~~~ 362 (692)
...++++++|++++|.+.. ++..+ ..+++|++|++++|.. ...+|..+ +..+++|++|+|++|.+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 3345667777777776653 22222 3567777777777631 11234333 25667777777777776
Q ss_pred cc-----CCccccCCCCCcEEEccCCCCCcC----CC-ccccc---------ccCCEEecccCCCc--ccC---ccccCC
Q 047027 363 EV-----LPSSVSDLTNLRSLLLGMCGRLKR----VP-SVAKL---------LALQYLDLEATGIE--EVP---EGMEML 418 (692)
Q Consensus 363 ~~-----lp~~i~~l~~L~~L~l~~c~~~~~----lp-~~~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l 418 (692)
.. +|..+..+++|++|++++|..... ++ .+..+ ++|++|++++|.+. .+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 64 566667777777777777543211 11 13333 67777777777664 344 345566
Q ss_pred CCCCEEEccCCCCCCCChhHHhhHH-HhhhhhccccceeEEecCc
Q 047027 419 ENLSHLYLYLPLLKKFPAALRETVE-EAASLSDRLDSFEGHFFKL 462 (692)
Q Consensus 419 ~~L~~L~l~~~~~~~lp~~l~~~~~-~l~~L~~~L~~L~~~~~~~ 462 (692)
++|++|++++|.++... +..... .+..++ +|+.|.+..+.+
T Consensus 187 ~~L~~L~L~~n~l~~~g--~~~l~~~~l~~~~-~L~~L~Ls~n~l 228 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEG--IEHLLLEGLAYCQ-ELKVLDLQDNTF 228 (386)
T ss_dssp TTCCEEECCSSCCCHHH--HHHHHHTTGGGCT-TCCEEECCSSCC
T ss_pred CCcCEEECcCCCCCHhH--HHHHHHHHhhcCC-CccEEECcCCCC
Confidence 77777777777654100 001111 345555 666666554443
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=2.8e-12 Score=127.10 Aligned_cols=147 Identities=21% Similarity=0.262 Sum_probs=121.2
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 379 (692)
+.++..+++..+.+..++ . +..+++|+.|++++|. +..++ . +..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~-~-~~~l~~L~~L~l~~n~-i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-S-QKELSGVQNFNGDNSN-IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-C-HHHHTTCSEEECTTSC-CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc-c-hhhcCcCcEEECcCCC-cccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 445566677777777766 2 3478999999999996 77777 3 5899999999999999999887 99999999999
Q ss_pred ccCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEe
Q 047027 380 LGMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHF 459 (692)
Q Consensus 380 l~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~ 459 (692)
+++| .+..+|.+.. .+|++|++++|.++.+| .++.+++|++|++++|.++.+| .+..+. +|+.|.+..
T Consensus 92 L~~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--------~l~~l~-~L~~L~L~~ 159 (263)
T 1xeu_A 92 VNRN-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--------MLGFLS-KLEVLDLHG 159 (263)
T ss_dssp CCSS-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--------GGGGCT-TCCEEECTT
T ss_pred CCCC-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--------HHccCC-CCCEEECCC
Confidence 9995 6777885555 99999999999999886 5899999999999999998776 477788 888888866
Q ss_pred cCccc
Q 047027 460 FKLKD 464 (692)
Q Consensus 460 ~~~~~ 464 (692)
+.+..
T Consensus 160 N~i~~ 164 (263)
T 1xeu_A 160 NEITN 164 (263)
T ss_dssp SCCCB
T ss_pred CcCcc
Confidence 55544
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.29 E-value=2.7e-11 Score=132.58 Aligned_cols=134 Identities=20% Similarity=0.347 Sum_probs=92.0
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEcc
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLG 381 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 381 (692)
+++.|++++|.+..+|..++ ++|+.|++++|. +..+| ..+++|++|++++|.++.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNA-LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCC-Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 56777777777777776553 567778887775 55666 236777788888777777776 554 77788887
Q ss_pred CCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecC
Q 047027 382 MCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFK 461 (692)
Q Consensus 382 ~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~ 461 (692)
+| .+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. . +|+.|.+..+.
T Consensus 129 ~N-~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--------l~--~-~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NN-QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--------LP--E-SLEALDVSTNL 191 (571)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--------CC--T-TCCEEECCSSC
T ss_pred CC-cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--------hh--C-CCCEEECcCCC
Confidence 74 4555666 56777888888777777776 46777788887777777663 22 4 66666665444
Q ss_pred cc
Q 047027 462 LK 463 (692)
Q Consensus 462 ~~ 463 (692)
+.
T Consensus 192 L~ 193 (571)
T 3cvr_A 192 LE 193 (571)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=2.1e-11 Score=114.53 Aligned_cols=125 Identities=26% Similarity=0.372 Sum_probs=107.7
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCch-hHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEcc
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPE-CFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLG 381 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~ 381 (692)
+.++++++.+..+|..+. .+++.|++++|. +..++. .++..+++|++|++++|.++.+ |..+.++.+|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999999998765 389999999997 666665 3468999999999999999977 7789999999999999
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCC
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~ 433 (692)
+|. +..++ .++++++|++|++++|.+..+ |..+..+++|++|++++|.+..
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 965 55555 599999999999999999966 6778999999999999998764
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=3.6e-11 Score=112.93 Aligned_cols=124 Identities=27% Similarity=0.419 Sum_probs=106.4
Q ss_pred cEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEEccC
Q 047027 304 ERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLLGM 382 (692)
Q Consensus 304 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 382 (692)
+.++++++.+..+|..+. ++++.|++++|. +..+|.. +..+++|++|++++|.++.++ ..+.++.+|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~-i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQ-FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSC-CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCc-CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 578899999999987754 579999999997 7788855 589999999999999999885 4589999999999999
Q ss_pred CCCCcCCC--cccccccCCEEecccCCCcccCcc-ccCCCCCCEEEccCCCCCC
Q 047027 383 CGRLKRVP--SVAKLLALQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLLKK 433 (692)
Q Consensus 383 c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~ 433 (692)
|. +..+| .++++++|++|++++|.++.+|.+ +..+++|++|++.+|.+..
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 64 55555 599999999999999999999875 7889999999999987753
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.5e-12 Score=135.76 Aligned_cols=131 Identities=18% Similarity=0.201 Sum_probs=63.5
Q ss_pred ccccEEEeecCCccccCC----CCCCCCC-CccEEEccCCCccCCCchhHhhcC-----CCCcEEEccCCCCccCCcc--
Q 047027 301 ENLERVSLMRNNIEEIPS----NMSPHCE-ILSTLLLQRNGLLQRIPECFFVHM-----HGLKVLNLSRTNIEVLPSS-- 368 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp~~-- 368 (692)
.++++|++++|.+...+. ..+..++ +|++|++++|. +.......+..+ ++|++|++++|.++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345666666666554442 2222444 56666666664 333222222332 5666666666665533221
Q ss_pred ---ccCC-CCCcEEEccCCCCCcCCC--ccc----c-cccCCEEecccCCCc-----ccCccccCCC-CCCEEEccCCCC
Q 047027 369 ---VSDL-TNLRSLLLGMCGRLKRVP--SVA----K-LLALQYLDLEATGIE-----EVPEGMEMLE-NLSHLYLYLPLL 431 (692)
Q Consensus 369 ---i~~l-~~L~~L~l~~c~~~~~lp--~~~----~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~ 431 (692)
+..+ .+|++|++++|. +...+ .++ . .++|++|++++|.+. .++..+..++ +|++|++++|.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3333 556666666543 33333 222 2 245666666666555 2333344443 566666666555
Q ss_pred CC
Q 047027 432 KK 433 (692)
Q Consensus 432 ~~ 433 (692)
+.
T Consensus 180 ~~ 181 (362)
T 3goz_A 180 AS 181 (362)
T ss_dssp GG
T ss_pred ch
Confidence 43
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.26 E-value=2.2e-11 Score=126.83 Aligned_cols=155 Identities=23% Similarity=0.318 Sum_probs=126.8
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhh-cCCCCcEEEccCCCCccCC-ccccCCCCCcEEEc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFV-HMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLLL 380 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l 380 (692)
.+.++++++.+..+|..+. +.++.|++++|. +..++...+. .+++|++|+|++|.++.++ ..+.++++|++|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC---CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3679999999999998754 468999999997 7777777666 8999999999999999886 46899999999999
Q ss_pred cCCCCCcCCC--cccccccCCEEecccCCCccc-CccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeE
Q 047027 381 GMCGRLKRVP--SVAKLLALQYLDLEATGIEEV-PEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEG 457 (692)
Q Consensus 381 ~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~ 457 (692)
++|. +..+| .+.++.+|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. ...++..+. +|+.|++
T Consensus 96 s~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~~~~l~-~L~~L~L 170 (361)
T 2xot_A 96 SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE---LIKDGNKLP-KLMLLDL 170 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG---GTC----CT-TCCEEEC
T ss_pred CCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH---HhcCcccCC-cCCEEEC
Confidence 9964 66666 589999999999999999977 46789999999999999999999862 112226788 8999988
Q ss_pred EecCccchh
Q 047027 458 HFFKLKDFN 466 (692)
Q Consensus 458 ~~~~~~~~~ 466 (692)
..+.+....
T Consensus 171 ~~N~l~~l~ 179 (361)
T 2xot_A 171 SSNKLKKLP 179 (361)
T ss_dssp CSSCCCCCC
T ss_pred CCCCCCccC
Confidence 877666543
No 121
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=5.3e-12 Score=128.65 Aligned_cols=174 Identities=14% Similarity=0.020 Sum_probs=120.8
Q ss_pred cccccccEEEeecCCccccCC----CCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc---CC--cc
Q 047027 298 EWEENLERVSLMRNNIEEIPS----NMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV---LP--SS 368 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp--~~ 368 (692)
....++++|++++|.+..... ..+..+++|++|++++|. +..++...+..+++|++|++++|.+.. ++ ..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 556788888888888764211 111257888888888887 566665556788888999998888643 32 23
Q ss_pred ccCCCCCcEEEccCCCCCcCCCc-----ccccccCCEEecccCCCccc-CccccCC---CCCCEEEccCCCCCCCChhHH
Q 047027 369 VSDLTNLRSLLLGMCGRLKRVPS-----VAKLLALQYLDLEATGIEEV-PEGMEML---ENLSHLYLYLPLLKKFPAALR 439 (692)
Q Consensus 369 i~~l~~L~~L~l~~c~~~~~lp~-----~~~l~~L~~L~l~~~~l~~l-p~~i~~l---~~L~~L~l~~~~~~~lp~~l~ 439 (692)
++.+++|++|++++| .++.+|. ++++++|++|++++|.+..+ |..++.+ ++|++|++++|.++.+|.
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--- 268 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--- 268 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS---
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh---
Confidence 467888888888885 4555552 46778888888888888865 7777666 588888888888888886
Q ss_pred hhHHHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecc
Q 047027 440 ETVEEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSA 486 (692)
Q Consensus 440 ~~~~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~ 486 (692)
.+. + +|+.|++..+.+...+. ......++.+.+.-+.
T Consensus 269 ----~~~--~-~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 269 ----GLP--A-KLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ----CCC--S-CCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTT
T ss_pred ----hhc--C-CCCEEECCCCcCCCCch---hhhCCCccEEECcCCC
Confidence 222 5 88888887777765432 1233556666655443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.24 E-value=2e-11 Score=112.02 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=112.1
Q ss_pred CCCCccEEEccCCCccC--CCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cccccccCC
Q 047027 323 HCEILSTLLLQRNGLLQ--RIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQ 399 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~ 399 (692)
..++++.|++++|. +. .+|.. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+| .++++++|+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCC-CChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 44789999999997 54 77765 48899999999999999988 789999999999999976554477 577799999
Q ss_pred EEecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccc
Q 047027 400 YLDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 400 ~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
+|++++|.++.+| ..+..+++|++|++++|.+..+|.. ....+..++ +|+.|++..+....
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~-~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLP-QLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCS-SCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCc-cCcEecCCCCChhh
Confidence 9999999999887 6889999999999999999888741 123567788 88888887665544
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.4e-10 Score=107.38 Aligned_cols=129 Identities=26% Similarity=0.412 Sum_probs=110.4
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 381 (692)
.+.+++.++.+..+|.... ++++.|++++|. +..++...+..+++|++|++++|.++.+|.. +..+.+|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCCC---CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4678889999998886654 689999999997 7778877778999999999999999988765 6899999999999
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCccc-cCCCCCCEEEccCCCCCCCCh
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEGM-EMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+| .+..+| .++++++|++|++++|.++.+|..+ ..+++|++|++++|.+...++
T Consensus 85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 95 566666 3789999999999999999999765 789999999999998876543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.22 E-value=1.5e-11 Score=110.52 Aligned_cols=121 Identities=22% Similarity=0.233 Sum_probs=65.2
Q ss_pred ccccEEEeecCCcc--ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCcc-CCccccCCCCCcE
Q 047027 301 ENLERVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEV-LPSSVSDLTNLRS 377 (692)
Q Consensus 301 ~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 377 (692)
++++.|++++|.+. .+|..+ ..+++|+.|++++|. +..+ . .+..+++|++|++++|.++. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVG-LTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSC-CCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCC-CCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45566666666655 454432 355666666666654 3333 2 23555666666666666554 4444445566666
Q ss_pred EEccCCCCCcCCC---cccccccCCEEecccCCCcccCc----cccCCCCCCEEEc
Q 047027 378 LLLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEVPE----GMEMLENLSHLYL 426 (692)
Q Consensus 378 L~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l 426 (692)
|++++|. +..+| .++.+++|++|++++|.+..+|. .++.+++|++|++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6666543 33322 35555566666666665555554 3455555555554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2.5e-11 Score=109.01 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=105.3
Q ss_pred CCCCccEEEccCCCcc-CCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCE
Q 047027 323 HCEILSTLLLQRNGLL-QRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQY 400 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~ 400 (692)
..++++.|++++|... ..+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .++++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4578999999999743 377764 48999999999999999888 678999999999999976544477 5778999999
Q ss_pred EecccCCCcccC--ccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeE
Q 047027 401 LDLEATGIEEVP--EGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEG 457 (692)
Q Consensus 401 L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~ 457 (692)
|++++|.++.+| ..++.+++|++|++++|.+..+|.. ....+..+. +|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~-~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY---RENVFKLLP-QLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH---HHHHHHHCT-TCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH---HHHHHHHCC-CcccccC
Confidence 999999999876 7899999999999999999887741 123466666 7776654
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.20 E-value=1e-11 Score=129.44 Aligned_cols=260 Identities=13% Similarity=0.070 Sum_probs=133.0
Q ss_pred EEeecCCccccCCCCCCCCCCccEEEccCCCccCCCch----hHhhcCC-CCcEEEccCCCCccC-CccccCC-----CC
Q 047027 306 VSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPE----CFFVHMH-GLKVLNLSRTNIEVL-PSSVSDL-----TN 374 (692)
Q Consensus 306 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~l-p~~i~~l-----~~ 374 (692)
+.++.+.+....+.+....++|+.|++++|. +...+. ..+..++ +|++|++++|.+... +..+..+ .+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3445555553322233244457777777775 555543 3445666 677777777776644 3334443 67
Q ss_pred CcEEEccCCCCCcCCC-cc----ccc-ccCCEEecccCCCcccCc-c----ccCC-CCCCEEEccCCCCCCCChhHHhhH
Q 047027 375 LRSLLLGMCGRLKRVP-SV----AKL-LALQYLDLEATGIEEVPE-G----MEML-ENLSHLYLYLPLLKKFPAALRETV 442 (692)
Q Consensus 375 L~~L~l~~c~~~~~lp-~~----~~l-~~L~~L~l~~~~l~~lp~-~----i~~l-~~L~~L~l~~~~~~~lp~~l~~~~ 442 (692)
|++|++++|......+ .+ ..+ ++|++|++++|.+...+. . +..+ ++|++|++++|.++.... ....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--DELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--HHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--HHHH
Confidence 7777777754222222 22 233 677777777777665542 1 2232 467777777766553221 0011
Q ss_pred HHhhhhhccccceeEEecCccchhhhhhcccCCCcceEEEeecccccccccccccccccchhhhhcccceEEeecccccC
Q 047027 443 EEAASLSDRLDSFEGHFFKLKDFNIYVKSADGRGSKDYCLWLSASGKRRFLTHLIPKNYTHLEKLYKHKSVCLFACKICE 522 (692)
Q Consensus 443 ~~l~~L~~~L~~L~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~l~L~~~~~~~ 522 (692)
..+..+..+|+.|.+ +++.+..
T Consensus 160 ~~l~~~~~~L~~L~L----------------------------------------------------------s~n~l~~ 181 (362)
T 3goz_A 160 QILAAIPANVNSLNL----------------------------------------------------------RGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEEC----------------------------------------------------------TTSCGGG
T ss_pred HHHhcCCccccEeee----------------------------------------------------------cCCCCch
Confidence 111211113444433 3333322
Q ss_pred CCC-----ccccc-cccccceeccccchhhhhhcCCcccCCcc-cccccCceeEEEEeccCCccccch---hchHHhhcC
Q 047027 523 REE-----PIVLP-EDVQFLQMNRVHDVASLNDVLPREQGLVN-IGKFSHDLKVIRFIYCGNLKNLFS---LRLLPALQN 592 (692)
Q Consensus 523 ~~~-----~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-l~~l~~~L~~L~l~~c~~l~~l~~---~~~l~~L~~ 592 (692)
... .+... ++|+.|+++++..... ....++. +...+++|++|+|++| .++..+. ...+..+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTT
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChh------HHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCC
Confidence 111 12223 5899999998763210 0011121 2332338999999986 4554322 122456789
Q ss_pred cceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCCC
Q 047027 593 LEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLP 642 (692)
Q Consensus 593 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 642 (692)
|+.|++++|. +..+........ ......+++|+.|++++.+
T Consensus 255 L~~L~L~~n~-l~~i~~~~~~~l--------~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 255 LQTVYLDYDI-VKNMSKEQCKAL--------GAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CSEEEEEHHH-HTTCCHHHHHHH--------HTTSTTCCEEEEECTTSCB
T ss_pred ccEEEeccCC-ccccCHHHHHHH--------HHHhccCCceEEEecCCCc
Confidence 9999999964 222211000000 0123356778888888764
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=1.7e-10 Score=126.20 Aligned_cols=117 Identities=22% Similarity=0.323 Sum_probs=64.1
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
++++.|++++|.+..+| . .+++|+.|++++|. +..+|. + .. +|++|++++|.++.+|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~ip-~---~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALISLP-E---LPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCSCCC-C---CCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCcccc-c---ccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 45666666666666555 1 34556666666664 444554 2 22 56666666666555554 4555666666
Q ss_pred cCCCCCcCCCcccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 381 GMCGRLKRVPSVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 381 ~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
++| .+..+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|
T Consensus 148 s~N-~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 148 DNN-QLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCC-ccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence 553 3444544 34555556665555555555 43 55555555555555555
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=3.8e-11 Score=136.40 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=99.7
Q ss_pred CCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-ccccc
Q 047027 317 PSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKL 395 (692)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l 395 (692)
+...+..+++|+.|+|++|. +..+|..+ ..+++|++|+|++|.++.+|..+++|.+|++|+|++|. +..+| .+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQ-IFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSC-CSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCC-CCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence 34445588999999999997 67888877 48999999999999999999999999999999999964 66888 89999
Q ss_pred ccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 396 LALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 396 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
.+|++|++++|.+..+|.+++++++|++|++++|.+...+
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence 9999999999999999999999999999999999987544
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=8.9e-11 Score=108.62 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-c-ccccccCCE
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-S-VAKLLALQY 400 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~-~~~l~~L~~ 400 (692)
.+++|+.|++++|. +..++. +....++|++|++++|.++.+ ..+..+++|++|++++| .+..+| . ++.+++|++
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 56677777777775 555543 323334788888888887776 56777888888888875 455556 4 477888888
Q ss_pred EecccCCCcccCc--cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccc
Q 047027 401 LDLEATGIEEVPE--GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 401 L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
|++++|.+..+|. .++.+++|++|++++|.+..+|.. ....+..+. +|+.|++..+....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~---~~~~~~~l~-~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY---RLYVIYKVP-QVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH---HHHHHHHCT-TCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH---HHHHHHHCC-ccceeCCCcCCHHH
Confidence 8888888777776 677788888888888877766641 112356666 77777766555443
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=4.7e-11 Score=135.58 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=100.0
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEcc-----CCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCC
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQ-----RNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNL 375 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L 375 (692)
..++.+++..+.+...+.... ....|+.+.+. .+. +. ++...+..+.+|++|+|++|.+..+|..+..+.+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~-~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENR-MV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccc-ee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 457788888888776655543 33334443332 232 22 44555689999999999999999999999999999
Q ss_pred cEEEccCCCCCcCCC-cccccccCCEEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccc
Q 047027 376 RSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDS 454 (692)
Q Consensus 376 ~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~ 454 (692)
++|+|++| .+..+| .++++++|++|+|++|.++.+|..++.|++|++|++++|.++.+|. +++.|. +|+.
T Consensus 250 ~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~-------~~~~l~-~L~~ 320 (727)
T 4b8c_D 250 TRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPW-------EFGNLC-NLQF 320 (727)
T ss_dssp SCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCS-------STTSCT-TCCC
T ss_pred CEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccCh-------hhhcCC-CccE
Confidence 99999996 566899 7999999999999999999999999999999999999999999997 688999 9999
Q ss_pred eeEEecCccc
Q 047027 455 FEGHFFKLKD 464 (692)
Q Consensus 455 L~~~~~~~~~ 464 (692)
|.+..+.+..
T Consensus 321 L~L~~N~l~~ 330 (727)
T 4b8c_D 321 LGVEGNPLEK 330 (727)
T ss_dssp EECTTSCCCS
T ss_pred EeCCCCccCC
Confidence 9997766653
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=5.5e-11 Score=110.04 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=108.2
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccc-cCCCCCcEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSV-SDLTNLRSL 378 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L 378 (692)
+.+++.|++++|.+..++. +....++|+.|++++|. +..++ . +..+++|++|++++|.++.+|+.+ ..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 5678999999999998854 44344599999999997 55553 3 588999999999999999998665 899999999
Q ss_pred EccCCCCCcCCC---cccccccCCEEecccCCCcccCcc----ccCCCCCCEEEccCCCCC
Q 047027 379 LLGMCGRLKRVP---SVAKLLALQYLDLEATGIEEVPEG----MEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 379 ~l~~c~~~~~lp---~~~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~ 432 (692)
++++| .+..+| .++.+++|++|++++|.+..+|.. ++.+++|+.|+++.+...
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99996 567777 488999999999999999999985 899999999999887643
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.6e-10 Score=127.19 Aligned_cols=107 Identities=22% Similarity=0.182 Sum_probs=76.7
Q ss_pred CccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCCcccccccCCEEeccc
Q 047027 326 ILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVPSVAKLLALQYLDLEA 405 (692)
Q Consensus 326 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~~L~~L~l~~ 405 (692)
.|++|++++|. +..+|. ++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+|.++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECCC
Confidence 36677777775 556665 46777777777777777777777777777777777774 455566777777777777777
Q ss_pred CCCccc--CccccCCCCCCEEEccCCCCCCCCh
Q 047027 406 TGIEEV--PEGMEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 406 ~~l~~l--p~~i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
|.++.+ |..++.+++|+.|++++|.+..+|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 777766 6777777777777777777766654
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=4.7e-10 Score=105.31 Aligned_cols=125 Identities=19% Similarity=0.224 Sum_probs=105.3
Q ss_pred ccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecc
Q 047027 327 LSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLE 404 (692)
Q Consensus 327 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~ 404 (692)
-++++++++. +..+|..+ .++|++|++++|.++.+|..+..+.+|++|++++| .+..++ .+.++++|++|+++
T Consensus 12 ~~~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 12 DTVVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECC
Confidence 3678888886 78888754 46899999999999999999999999999999996 455665 59999999999999
Q ss_pred cCCCcccCc-cccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCcc
Q 047027 405 ATGIEEVPE-GMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLK 463 (692)
Q Consensus 405 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~ 463 (692)
+|.++.+|. .+..+++|++|++++|.+..+|.. .+..+. +|+.|.+..+.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~------~~~~l~-~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG------AFNDLS-ALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT------TTTTCT-TCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh------hhhcCc-cccEEEeCCCCee
Confidence 999998875 589999999999999999988851 366777 8888887655443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=3e-10 Score=124.88 Aligned_cols=119 Identities=21% Similarity=0.299 Sum_probs=104.5
Q ss_pred cccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEcc
Q 047027 302 NLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLG 381 (692)
Q Consensus 302 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 381 (692)
.++.|++++|.+..+|. +..+++|+.|++++|. +..+|..+ +.+++|++|+|++|.++.+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSC-CCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccc-ccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 58899999999999986 4589999999999997 67898865 89999999999999999998 89999999999999
Q ss_pred CCCCCcCC--C-cccccccCCEEecccCCCcccCcccc----CCCCCCEEEc
Q 047027 382 MCGRLKRV--P-SVAKLLALQYLDLEATGIEEVPEGME----MLENLSHLYL 426 (692)
Q Consensus 382 ~c~~~~~l--p-~~~~l~~L~~L~l~~~~l~~lp~~i~----~l~~L~~L~l 426 (692)
+|. +..+ | .++++++|++|++++|.++.+|+.+. .+++|+.|++
T Consensus 517 ~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 964 5555 7 89999999999999999998886543 3788888864
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.06 E-value=8.5e-10 Score=103.49 Aligned_cols=122 Identities=23% Similarity=0.238 Sum_probs=100.1
Q ss_pred ecCcceeecCCcccccccccEEEeecCCccccCCC-CCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCc
Q 047027 285 KAGLRLLKFPGEQEWEENLERVSLMRNNIEEIPSN-MSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIE 363 (692)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 363 (692)
-.+..+..+|... ..+++.|++++|.+..++.. .+..+++|++|++++|. +..+++..|..+++|++|++++|.++
T Consensus 15 ~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 15 CTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIK 91 (192)
T ss_dssp CTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred cCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCC
Confidence 3445566777643 34899999999999988764 46689999999999997 66665555689999999999999999
Q ss_pred cCCc-cccCCCCCcEEEccCCCCCcCCC-cccccccCCEEecccCCCc
Q 047027 364 VLPS-SVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDLEATGIE 409 (692)
Q Consensus 364 ~lp~-~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l~~~~l~ 409 (692)
.++. .+..+++|++|++++|......| .++.+++|++|++++|.+.
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8755 48899999999999976555556 7999999999999999775
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.03 E-value=2.1e-09 Score=99.38 Aligned_cols=121 Identities=26% Similarity=0.404 Sum_probs=101.9
Q ss_pred CcceeecCCcccccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC
Q 047027 287 GLRLLKFPGEQEWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP 366 (692)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 366 (692)
+..+..+|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|++|++++|.++.+|
T Consensus 16 ~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 92 (177)
T 2o6r_A 16 SKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLP 92 (177)
T ss_dssp SSCCSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccC
Confidence 3445556643 34789999999999999988877789999999999997 77888877789999999999999999887
Q ss_pred cc-ccCCCCCcEEEccCCCCCcCCC-c-ccccccCCEEecccCCCccc
Q 047027 367 SS-VSDLTNLRSLLLGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEV 411 (692)
Q Consensus 367 ~~-i~~l~~L~~L~l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~l 411 (692)
.. +..+++|++|++++| .+..+| . +.++++|++|++++|.+...
T Consensus 93 ~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 93 NGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 65 688999999999996 566777 4 68899999999999987643
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.1e-09 Score=100.73 Aligned_cols=104 Identities=27% Similarity=0.409 Sum_probs=80.3
Q ss_pred cEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccCCCCCcCCC-c-ccccccCCEEecc
Q 047027 328 STLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGMCGRLKRVP-S-VAKLLALQYLDLE 404 (692)
Q Consensus 328 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~c~~~~~lp-~-~~~l~~L~~L~l~ 404 (692)
+.++++++. +..+|..+ ..+|++|++++|.++.+ |..+.++.+|++|++++| .+..+| . ++++++|++|+++
T Consensus 15 ~~l~~~~n~-l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC-CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 567777765 66777644 36788888888888776 456778888888888874 566666 3 6788888888888
Q ss_pred cCCCcccCcc-ccCCCCCCEEEccCCCCCCCCh
Q 047027 405 ATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 405 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
+|.++.+|.+ +..+++|++|++++|.+...+.
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8888888876 7888999999999998887765
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=2e-09 Score=99.06 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=91.1
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 381 (692)
.+.++++++.+..+|..+. ++|+.|++++|. +..+++..|..+++|++|+|++|.++.+|.. +.++++|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP---TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC---CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3678999999999988764 789999999997 6777666668999999999999999999876 5789999999999
Q ss_pred CCCCCcCCC-c-ccccccCCEEecccCCCcccCcccc
Q 047027 382 MCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPEGME 416 (692)
Q Consensus 382 ~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~~i~ 416 (692)
+| .+..+| . ++++++|++|++++|.+...+..+.
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 85 566777 4 8999999999999998887665544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=6e-09 Score=95.50 Aligned_cols=105 Identities=26% Similarity=0.340 Sum_probs=80.0
Q ss_pred ccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-CccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEec
Q 047027 327 LSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-PSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDL 403 (692)
Q Consensus 327 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l 403 (692)
.+.++++++. +..+|..+ .++|++|++++|.++.+ |..+.++.+|++|++++| .+..+| .+.++++|++|++
T Consensus 11 ~~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCC-cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 4567777775 66677644 36778888888888877 555778888888888875 456666 3678888889999
Q ss_pred ccCCCcccCcc-ccCCCCCCEEEccCCCCCCCCh
Q 047027 404 EATGIEEVPEG-MEMLENLSHLYLYLPLLKKFPA 436 (692)
Q Consensus 404 ~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~lp~ 436 (692)
++|.++.+|.+ +..+++|++|++++|.+...+.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888888865 7888999999999888876553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=1e-11 Score=117.47 Aligned_cols=148 Identities=21% Similarity=0.286 Sum_probs=105.6
Q ss_pred ccEEEeecC--CccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEc
Q 047027 303 LERVSLMRN--NIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLL 380 (692)
Q Consensus 303 l~~l~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 380 (692)
++...+.+. .+..+|..+ ..+++|++|++++|. +..+| . +..+++|++|++++|.++.+|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATL-STLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 444444443 344454433 378889999998886 66677 3 47888999999999988888887777888999999
Q ss_pred cCCCCCcCCCcccccccCCEEecccCCCcccCc--cccCCCCCCEEEccCCCCCCCChh----HHhhHHHhhhhhccccc
Q 047027 381 GMCGRLKRVPSVAKLLALQYLDLEATGIEEVPE--GMEMLENLSHLYLYLPLLKKFPAA----LRETVEEAASLSDRLDS 454 (692)
Q Consensus 381 ~~c~~~~~lp~~~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~lp~~----l~~~~~~l~~L~~~L~~ 454 (692)
++| .+..+|.++++++|++|++++|.+..+|. .+..+++|++|++++|.+...++. -......+..+. +|+.
T Consensus 101 ~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-~L~~ 178 (198)
T 1ds9_A 101 SYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKK 178 (198)
T ss_dssp EEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-SCSE
T ss_pred cCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-CcEE
Confidence 885 56667778888899999999998887764 678889999999988876433110 011122356666 7776
Q ss_pred ee
Q 047027 455 FE 456 (692)
Q Consensus 455 L~ 456 (692)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=5e-09 Score=96.01 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=90.4
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCcc-ccCCCCCcEEEcc
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSS-VSDLTNLRSLLLG 381 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~ 381 (692)
.+.++++++.+..+|..+. ++++.|++++|. +..+++..|..+++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~---~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP---TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC---CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4689999999999998764 789999999997 7777666669999999999999999998765 5899999999999
Q ss_pred CCCCCcCCC--cccccccCCEEecccCCCcccCc
Q 047027 382 MCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE 413 (692)
Q Consensus 382 ~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~ 413 (692)
+| .+..+| .+.++++|++|++++|.+...+.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 95 566676 48999999999999998765443
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.9e-10 Score=108.66 Aligned_cols=129 Identities=25% Similarity=0.281 Sum_probs=105.0
Q ss_pred CccEEEccCCC-ccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEEccCCCCCcCCC-cccccccCCEEec
Q 047027 326 ILSTLLLQRNG-LLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLLLGMCGRLKRVP-SVAKLLALQYLDL 403 (692)
Q Consensus 326 ~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~c~~~~~lp-~~~~l~~L~~L~l 403 (692)
.++...+.++. .+..+|..+ ..+++|++|++++|.++.+| .+..+++|++|++++| .+..+| .++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 45566666552 256666654 89999999999999999988 8999999999999996 567888 5778899999999
Q ss_pred ccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccc
Q 047027 404 EATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 404 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
++|.+..+| .++.+++|++|++++|.+..+|. ...+..+. +|+.|.+..+.+..
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~-----~~~l~~l~-~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNKITNWGE-----IDKLAALD-KLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEECCCHHH-----HHHHTTTT-TCSEEEECSCHHHH
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCcCCchhH-----HHHHhcCC-CCCEEEecCCcccc
Confidence 999999887 68899999999999999887653 24678888 89999887655543
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=7.7e-08 Score=98.56 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=51.2
Q ss_pred cccccEEEeecCCcc--------------------ccCCCCCCC--------CCCccEEEccCCCccCCCchhHhhcCCC
Q 047027 300 EENLERVSLMRNNIE--------------------EIPSNMSPH--------CEILSTLLLQRNGLLQRIPECFFVHMHG 351 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 351 (692)
+.+++.|++++|.+. .+|...|.. |++|+.+.+.. . +..++...|.++.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcc
Confidence 345677777777665 455666666 77777777776 2 66677766777777
Q ss_pred CcEEEccCCCCccCC-ccccCCCCCcEEEcc
Q 047027 352 LKVLNLSRTNIEVLP-SSVSDLTNLRSLLLG 381 (692)
Q Consensus 352 L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 381 (692)
|+.|+++++.+..++ ..+..+.++.++...
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 777777777766553 335555555555443
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=1.4e-07 Score=97.36 Aligned_cols=104 Identities=21% Similarity=0.189 Sum_probs=70.6
Q ss_pred EEEccCCCccCCCchhHhhcCCCCcEEEccC-CCCccCC-ccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecc
Q 047027 329 TLLLQRNGLLQRIPECFFVHMHGLKVLNLSR-TNIEVLP-SSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLE 404 (692)
Q Consensus 329 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~ 404 (692)
.+++++++.+..+|. +..+.+|++|+|++ |.++.+| ..+++|.+|++|+|++|. +..+| .|++|++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCC
Confidence 345655523666776 46777777777775 7777765 457777778888877753 44444 46778888888888
Q ss_pred cCCCcccCccccCCCCCCEEEccCCCCCCCC
Q 047027 405 ATGIEEVPEGMEMLENLSHLYLYLPLLKKFP 435 (692)
Q Consensus 405 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp 435 (692)
+|.+..+|.++....+|+.|++.+|.+....
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 8877777766544444888888777776544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=4.5e-07 Score=93.55 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=80.4
Q ss_pred cEEEeecC-CccccCCCCCCCCCCccEEEccC-CCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEc
Q 047027 304 ERVSLMRN-NIEEIPSNMSPHCEILSTLLLQR-NGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLL 380 (692)
Q Consensus 304 ~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l 380 (692)
..++.+++ .+..+|. + ..+++|+.|+|++ |. +..++...|..+.+|++|+|++|.++.+|+ .+.+|.+|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-L-PGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT-S-CSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC-C-CCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34677777 7888888 4 4888899999986 65 777887667899999999999999987754 5788999999999
Q ss_pred cCCCCCcCCC-c-ccccccCCEEecccCCCcc
Q 047027 381 GMCGRLKRVP-S-VAKLLALQYLDLEATGIEE 410 (692)
Q Consensus 381 ~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~ 410 (692)
++| .+..+| . +..+. |++|++.+|.+..
T Consensus 88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 984 566777 4 44444 9999999887763
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=2.5e-06 Score=89.39 Aligned_cols=119 Identities=14% Similarity=0.244 Sum_probs=67.8
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 379 (692)
..++.+.+.. .+..++...|..+ +|+.+.+..+ +..++...|.++ +|+.+.+.. .++.++ ..+.+|.+|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 3444444432 3455555555554 5777766554 555665555553 466776664 455553 3466667777777
Q ss_pred ccCCCCCcCCC-c-ccccccCCEEecccCCCcccCc-cccCCCCCCEEEccC
Q 047027 380 LGMCGRLKRVP-S-VAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYL 428 (692)
Q Consensus 380 l~~c~~~~~lp-~-~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 428 (692)
+.. +.+..+| . +. ..+|+.+.+.. .++.++. .+.++.+|+.+.+..
T Consensus 187 l~~-n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 187 LSK-TKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CTT-SCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred cCC-CcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 765 3455555 2 33 46677777653 3555553 345566677777654
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=6.6e-07 Score=91.55 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=20.5
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCC
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNG 336 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 336 (692)
+.+++.+.+.. .+..++...|..|++|+.+.+..|.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC
Confidence 45555666655 5555655555566666666665553
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=1.1e-07 Score=98.74 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=96.0
Q ss_pred ccccEEEeecCCccc-----cCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccC-----Cccc-
Q 047027 301 ENLERVSLMRNNIEE-----IPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVL-----PSSV- 369 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----p~~i- 369 (692)
+.++.|++++|.+.. +...+....++|+.|++++|.....-...+...+++|+.|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456778888877653 21112223367888888888632222223334456788888888877532 1122
Q ss_pred cCCCCCcEEEccCCCCCcC-----CC-cccccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCCCCCChhH
Q 047027 370 SDLTNLRSLLLGMCGRLKR-----VP-SVAKLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLLKKFPAAL 438 (692)
Q Consensus 370 ~~l~~L~~L~l~~c~~~~~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~lp~~l 438 (692)
....+|++|++++|. +.. ++ .+...++|++|++++|.+.. ++..+...++|++|++++|.++....
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-- 228 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-- 228 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH--
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH--
Confidence 245678888888864 332 22 24567788888888887763 34556667788888888887753221
Q ss_pred HhhHHHhhhhhccccceeEEecCccc
Q 047027 439 RETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 439 ~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
......+...+ .|+.|++..+.+.+
T Consensus 229 ~~l~~~L~~~~-~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHP-SLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCS-SCCEEECTTSSCCH
T ss_pred HHHHHHHHhCC-CCCEEeccCCCCCH
Confidence 11223344556 77777776665544
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=2.4e-05 Score=81.86 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=89.9
Q ss_pred CCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEccCCCCCcCCC--cccccccCC
Q 047027 323 HCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQ 399 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~ 399 (692)
.+..++.+.+... +..++...|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .+..++ .|.++.+|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCC
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCC
Confidence 4567778888764 777887777875 7999999766 777754 3555 4799999985 577777 589999999
Q ss_pred EEecccCCCcccCccccCCCCCCEEEccCCCCCCCChhHHhhHHHhhhhhccccceeE
Q 047027 400 YLDLEATGIEEVPEGMEMLENLSHLYLYLPLLKKFPAALRETVEEAASLSDRLDSFEG 457 (692)
Q Consensus 400 ~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~ 457 (692)
.+++.+++++.+|.+.....+|+.+.+..+ +..++. ..+..+. +|+.+.+
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~------~aF~~~~-~L~~l~l 233 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGS------QAFLKTS-QLKTIEI 233 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECT------TTTTTCT-TCCCEEC
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehh------hHhhCCC-CCCEEec
Confidence 999999999999987766789999998643 555553 1345555 6666655
No 150
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.07 E-value=3.3e-05 Score=79.42 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred CeEEEEecCccCcCC---------cccccCCCCCCCCCeEEEEEecchhhhcc-----------ccc-ccee-eccCChH
Q 047027 47 EKFVLILDDTWEAFP---------LEEVGIPEPNEENGCKLVITTRSHTVCRS-----------MKC-KQVV-VELLSKQ 104 (692)
Q Consensus 47 kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~IivTTR~~~v~~~-----------~~~-~~~~-l~~l~~~ 104 (692)
++++|||||++.... +..+..... ..++.++|+|++...+... .+. ...+ +.+|+.+
T Consensus 128 ~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp SCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred CCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHH
Confidence 389999999987543 122221111 1246789999887543111 111 1234 9999999
Q ss_pred hHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcCHHHH-HHHHHHHhhccccCCCchhhhhhh
Q 047027 105 EAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEIHEW-RNALNELRGLVRSRNGVNADVLGR 183 (692)
Q Consensus 105 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w-~~~~~~l~~~~~~~~~~~~~~~~~ 183 (692)
|+.+++.......... ...+.+.++++.++|.|+++..++..+....+...+ ....+..... ...++..
T Consensus 207 e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~- 276 (350)
T 2qen_A 207 TSVEFLKRGFREVNLD---VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL------IMGELEE- 276 (350)
T ss_dssp HHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH------HHHHHHH-
Confidence 9999998754322111 124577899999999999999988764321122111 1111111100 0011111
Q ss_pred hhhccccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHHHcCCcccchhhhhHHHhHHHHHHHHHhhccccccCCCCEEE
Q 047027 184 LEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVK 263 (692)
Q Consensus 184 l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~a~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~ 263 (692)
..+ . + +..+..+..+|. + .++...+.....+.. - . ........+++.|.+.+++.... ..+.
T Consensus 277 --l~~-~-~-~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~-----~~~~~~~~~l~~L~~~gli~~~~--~~y~ 338 (350)
T 2qen_A 277 --LRR-R-S-PRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T-K-----IPEPRLYALLENLKKMNWIVEED--NTYK 338 (350)
T ss_dssp --HHH-H-C-HHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-C-----CCHHHHHHHHHHHHHTTSEEEET--TEEE
T ss_pred --HHh-C-C-hhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-C-----CCHHHHHHHHHHHHhCCCEEecC--CEEE
Confidence 111 1 5 678888888887 2 234444444322211 0 0 01234567799999999998652 3455
Q ss_pred e-hHHHHHHH
Q 047027 264 M-HDLIRDMA 272 (692)
Q Consensus 264 m-hdl~~~~~ 272 (692)
+ |.+++++.
T Consensus 339 ~~~p~~~~~~ 348 (350)
T 2qen_A 339 IADPVVATVL 348 (350)
T ss_dssp ESSHHHHHHH
T ss_pred EecHHHHHHH
Confidence 5 66776654
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.06 E-value=1.1e-05 Score=85.15 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=129.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHHH-hCCeEEEEecCccCcC--------CcccccCCC--
Q 047027 2 WVTVSQPLDLFKLQTEIATALKQSLLE-NEDKVRRAGRLLGMLK-AKEKFVLILDDTWEAF--------PLEEVGIPE-- 69 (692)
Q Consensus 2 wv~vs~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~-~~kr~LlVlDdv~~~~--------~~~~l~~~~-- 69 (692)
||......+...++..++++++..... ..........+.+.+. .+++++|||||++... .+..+...+
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHh
Confidence 555557778889999999888653221 1122233344444442 3679999999998742 122222211
Q ss_pred -CCCC--CCeEEEEEecchhhhc-----------cccccceeeccCChHhHHHHHHhhh---cCCCCCCchhHHHHHHHH
Q 047027 70 -PNEE--NGCKLVITTRSHTVCR-----------SMKCKQVVVELLSKQEAFNLFIDGV---GNSILQVPALNKEIINEV 132 (692)
Q Consensus 70 -~~~~--~gs~IivTTR~~~v~~-----------~~~~~~~~l~~l~~~~~~~Lf~~~~---~~~~~~~~~~~~~~~~~i 132 (692)
+..+ ....||+|||+..+.. .... .+.+.+++.++++++|...+ +... . -..+.+..+
T Consensus 171 ~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~-~i~l~~l~~~e~~~ll~~~~~~~~~~~-~---~~~~~~~~i 245 (412)
T 1w5s_A 171 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF-KLHLPAYKSRELYTILEQRAELGLRDT-V---WEPRHLELI 245 (412)
T ss_dssp SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE-EEECCCCCHHHHHHHHHHHHHHHBCTT-S---CCHHHHHHH
T ss_pred cccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC-eeeeCCCCHHHHHHHHHHHHHhcCCCC-C---CChHHHHHH
Confidence 1112 3445888888665321 1121 22399999999999997654 3221 1 124678889
Q ss_pred HHHhC------CchhHHHHHHHHhc------CC--cCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhH
Q 047027 133 VEECG------RLPLAIVTVAASMS------GE--EEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQ 198 (692)
Q Consensus 133 ~~~c~------glPlal~~~g~~L~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~ 198 (692)
++.|+ |.|..+..+..... +. .+.+.+......... ...+...++.|+ +..+.
T Consensus 246 ~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~-~~~~~ 312 (412)
T 1w5s_A 246 SDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALS-IHELI 312 (412)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC-HHHHH
T ss_pred HHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCC-HHHHH
Confidence 99999 99976655543211 11 122333322221100 234566778898 78899
Q ss_pred HHhHhcCCC--CCCccCHHHHHHHHHHcC--CcccchhhhhHHHhHHHHHHHHHhhcccccc
Q 047027 199 CFLYCALYP--EDFAIPKDELIDYWIAEG--FIEEVKDVQAKYDRGHTILNRLVNCCLLESA 256 (692)
Q Consensus 199 ~fl~la~fp--~~~~i~~~~l~~~w~a~~--~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 256 (692)
++..+|.+. .+..++...+...+.... .... . .........+++.|.+.+++...
T Consensus 313 ~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 313 ILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-K--PRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-C--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-C--CCCHHHHHHHHHHHHhCCCEEee
Confidence 988888754 233455555554442110 0000 0 00123455678999999999764
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.5e-06 Score=77.03 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=51.2
Q ss_pred ccccceeccccchhhhhhcCCcccCCcccccccCceeEEEEeccCCccccchhchHHhh----cCcceeeccccccchhh
Q 047027 532 DVQFLQMNRVHDVASLNDVLPREQGLVNIGKFSHDLKVIRFIYCGNLKNLFSLRLLPAL----QNLEVLKVEGCDSIEEI 607 (692)
Q Consensus 532 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~l~~l~~~L~~L~l~~c~~l~~l~~~~~l~~L----~~L~~L~l~~c~~l~~l 607 (692)
.|+.|++++|. ++ -.++..+..++ +|++|+|++|..+++- .+..+..+ ++|++|++++|++++.-
T Consensus 62 ~L~~LDLs~~~-It--------d~GL~~L~~~~-~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 62 KIQAIDATDSC-IM--------SIGFDHMEGLQ-YVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CEEEEEEESCC-CC--------GGGGGGGTTCS-CCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred eEeEEeCcCCC-cc--------HHHHHHhcCCC-CCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 46666666665 22 13344455666 7777777777766663 23333332 35777777777766552
Q ss_pred hccCcchhhhhhcccceeeeeccCCcceeecCCCCCccee
Q 047027 608 VAVDDEETEKELATNTIVNTVTLPRLKKLRFSKLPEFKSV 647 (692)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~ 647 (692)
-. ..+..+++|+.|.+++|+++++.
T Consensus 131 Gl---------------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GI---------------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HH---------------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HH---------------HHHhcCCCCCEEECCCCCCCCch
Confidence 11 12224666777777777666553
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2e-06 Score=77.56 Aligned_cols=89 Identities=11% Similarity=0.136 Sum_probs=68.2
Q ss_pred ceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeec----cCCcceeecCCC
Q 047027 566 DLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVT----LPRLKKLRFSKL 641 (692)
Q Consensus 566 ~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~ 641 (692)
+|++|++++|. +++. .+..+.++++|++|++++|..++.--.. .+.. .++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~---------------~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLE---------------RLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHH---------------HHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHH---------------HHHhcccccCCCCEEEcCCC
Confidence 79999999997 6664 4555678999999999999888763211 1112 257999999999
Q ss_pred CCcceeccCCceeecCCcceEEEcCCCCccc
Q 047027 642 PEFKSVCSNNGVLVCNSLQEIKVYGCPKLKR 672 (692)
Q Consensus 642 ~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~ 672 (692)
+++++-... ....+++|+.|++++|++++.
T Consensus 125 ~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 125 GNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 998875331 234689999999999998875
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.01 E-value=7.6e-07 Score=92.40 Aligned_cols=130 Identities=21% Similarity=0.202 Sum_probs=95.8
Q ss_pred ccccEEEeecCCcccc-CCCCCCCCCCccEEEccCCCccCCCchhHh-----hcCCCCcEEEccCCCCcc-----CCccc
Q 047027 301 ENLERVSLMRNNIEEI-PSNMSPHCEILSTLLLQRNGLLQRIPECFF-----VHMHGLKVLNLSRTNIEV-----LPSSV 369 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~-----lp~~i 369 (692)
.+++.|++++|.+... ...+...+++|+.|++++|. +.......+ ...+.|++|+|++|.++. ++..+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 5789999999987531 11223346789999999996 443322222 246789999999999863 45566
Q ss_pred cCCCCCcEEEccCCCCCcC-----CC-cccccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCCC
Q 047027 370 SDLTNLRSLLLGMCGRLKR-----VP-SVAKLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLLK 432 (692)
Q Consensus 370 ~~l~~L~~L~l~~c~~~~~-----lp-~~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~ 432 (692)
..+++|++|++++|. +.. ++ .+...++|++|++++|.+.. ++..+...++|++|++++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 788999999999975 443 23 46677899999999998874 4455667789999999999876
No 155
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.88 E-value=7.5e-05 Score=76.94 Aligned_cols=197 Identities=13% Similarity=0.071 Sum_probs=108.6
Q ss_pred CeEEEEecCccCcC-----CcccccCCCCCCCCCeEEEEEecchhhhcc----------c-cc-ccee-eccCChHhHHH
Q 047027 47 EKFVLILDDTWEAF-----PLEEVGIPEPNEENGCKLVITTRSHTVCRS----------M-KC-KQVV-VELLSKQEAFN 108 (692)
Q Consensus 47 kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IivTTR~~~v~~~----------~-~~-~~~~-l~~l~~~~~~~ 108 (692)
++++|||||++... +|..+...+....++.++|+|+|....... . +. ...+ +.+|+.+|+.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 48999999997732 232221111111246789999997653211 1 11 1334 99999999999
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHhcCCcCHHHHHH-HHHHHhhccccCCCchhhhhhhhhhc
Q 047027 109 LFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASMSGEEEIHEWRN-ALNELRGLVRSRNGVNADVLGRLEFS 187 (692)
Q Consensus 109 Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~l~~s 187 (692)
++...+........ . ...|++.|+|.|+++..++..+....+...|-. ..+..... ....+...+..
T Consensus 217 ~l~~~~~~~~~~~~-~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~- 284 (357)
T 2fna_A 217 FLRRGFQEADIDFK-D----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL------ILKEFENFLHG- 284 (357)
T ss_dssp HHHHHHHHHTCCCC-C----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCCC-c----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH------HHHHHHHHhhc-
Confidence 99875421111111 1 178999999999999999877643222222321 11111000 00111111100
Q ss_pred cccCCChhhhHHHhHhcCCCCCCccCHHHHHHHHH-HcCC-cccchhhhhHHHhHHHHHHHHHhhccccccCCCCEEE-e
Q 047027 188 YHRLKDEKLQQCFLYCALYPEDFAIPKDELIDYWI-AEGF-IEEVKDVQAKYDRGHTILNRLVNCCLLESAEDGSCVK-M 264 (692)
Q Consensus 188 y~~L~~~~~k~~fl~la~fp~~~~i~~~~l~~~w~-a~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-m 264 (692)
-..++ +..+..+..+|+ +. +...+..... ..|. +. ......+++.|.+.+++.... ..|. .
T Consensus 285 ~~~l~-~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~~--------~~~~~~~L~~L~~~gli~~~~--~~y~f~ 348 (357)
T 2fna_A 285 REIAR-KRYLNIMRTLSK---CG--KWSDVKRALELEEGIEIS--------DSEIYNYLTQLTKHSWIIKEG--EKYCPS 348 (357)
T ss_dssp CGGGH-HHHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCCC--------HHHHHHHHHHHHHTTSEEESS--SCEEES
T ss_pred ccccc-HHHHHHHHHHHc---CC--CHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHhCCCEEecC--CEEEec
Confidence 01566 788899999987 22 4444332210 1121 11 234567799999999998653 3455 4
Q ss_pred hHHHHHH
Q 047027 265 HDLIRDM 271 (692)
Q Consensus 265 hdl~~~~ 271 (692)
|++++++
T Consensus 349 ~~~~~~~ 355 (357)
T 2fna_A 349 EPLISLA 355 (357)
T ss_dssp SHHHHHH
T ss_pred CHHHHHh
Confidence 6777765
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00059 Score=71.31 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=39.9
Q ss_pred cccCceeEEEEeccCCccccchhchHHhhcCcceeeccccccchhhhccCcchhhhhhcccceeeeeccCCcceeecCCC
Q 047027 562 KFSHDLKVIRFIYCGNLKNLFSLRLLPALQNLEVLKVEGCDSIEEIVAVDDEETEKELATNTIVNTVTLPRLKKLRFSKL 641 (692)
Q Consensus 562 ~l~~~L~~L~l~~c~~l~~l~~~~~l~~L~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 641 (692)
... +|+.+.+.. .++.+ .-..+.++.+|+.+.+.+ .++.+... + ..+..+|+.+.+..
T Consensus 295 ~~~-~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~--a-------------F~~c~~L~~i~lp~- 352 (394)
T 4fs7_A 295 GCS-SLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEIGKR--S-------------FRGCTSLSNINFPL- 352 (394)
T ss_dssp TCT-TCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTT--T-------------TTTCTTCCEECCCT-
T ss_pred ccc-ccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEEhHH--h-------------ccCCCCCCEEEECc-
Confidence 344 677777743 34444 223466667777777753 34443211 1 11345666666642
Q ss_pred CCcceeccCCceeecCCcceEEE
Q 047027 642 PEFKSVCSNNGVLVCNSLQEIKV 664 (692)
Q Consensus 642 ~~L~~~~~~~~~~~~~~L~~L~i 664 (692)
+++.+.. ..+..+++|+.+.+
T Consensus 353 -~l~~I~~-~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 353 -SLRKIGA-NAFQGCINLKKVEL 373 (394)
T ss_dssp -TCCEECT-TTBTTCTTCCEEEE
T ss_pred -cccEehH-HHhhCCCCCCEEEE
Confidence 3555532 23344455555555
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=7.8e-05 Score=76.58 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCCcEEEccCCCCCcCCC-c---ccccccCCEEecccCCCcc-----cCccccCCCCCCEEEccCCCC
Q 047027 372 LTNLRSLLLGMCGRLKRVP-S---VAKLLALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLPLL 431 (692)
Q Consensus 372 l~~L~~L~l~~c~~~~~lp-~---~~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~ 431 (692)
+++|++|++++|......+ . ...+++|++|+++.|.+.. ++.++.++++|+.|+++.|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 4555565555543221111 1 1234555555555555442 233334455555555555543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.0059 Score=63.65 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=60.1
Q ss_pred ccEEEeecCCccccCCCCCCCCCCccEEEccCCC--ccCCCchhHhhcCCCCcEEEccCCCCccCC-ccccCCCCCcEEE
Q 047027 303 LERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNG--LLQRIPECFFVHMHGLKVLNLSRTNIEVLP-SSVSDLTNLRSLL 379 (692)
Q Consensus 303 l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 379 (692)
++.+.+.. .+..++...|..|.+|+.+.+..+. .+..+....|..+.+|+.+.+..+ ++.++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55555543 2555555556566666666665431 244455555555666655555433 33332 2345566666666
Q ss_pred ccCCCCCcCCC--cccccccCCEEecccCCCcccCccccCCCCCCEEEc
Q 047027 380 LGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPEGMEMLENLSHLYL 426 (692)
Q Consensus 380 l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 426 (692)
+.. .+..++ .+..+.+|+.+.+..+ ++.+......-.+|+.+.+
T Consensus 144 lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 144 IPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEE
T ss_pred ccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEE
Confidence 643 233344 3555666666666442 3444433323345555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.23 E-value=0.00024 Score=69.05 Aligned_cols=78 Identities=27% Similarity=0.231 Sum_probs=46.2
Q ss_pred hcCCCCcEEEccCCCCccC---CccccCCCCCcEEEccCCCCCcCCCcccccc--cCCEEecccCCCc-ccCc-------
Q 047027 347 VHMHGLKVLNLSRTNIEVL---PSSVSDLTNLRSLLLGMCGRLKRVPSVAKLL--ALQYLDLEATGIE-EVPE------- 413 (692)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~c~~~~~lp~~~~l~--~L~~L~l~~~~l~-~lp~------- 413 (692)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++| .+..+..+..+. +|++|++.+|.+. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777777777776644 344556777777777763 444444333333 6677777776655 3331
Q ss_pred cccCCCCCCEEE
Q 047027 414 GMEMLENLSHLY 425 (692)
Q Consensus 414 ~i~~l~~L~~L~ 425 (692)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245566666665
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.18 E-value=0.00058 Score=66.36 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=58.0
Q ss_pred CCCCccEEEccCCCccCCCch--hHhhcCCCCcEEEccCCCCccCCccccCCC--CCcEEEccCCCCCcCCCc-------
Q 047027 323 HCEILSTLLLQRNGLLQRIPE--CFFVHMHGLKVLNLSRTNIEVLPSSVSDLT--NLRSLLLGMCGRLKRVPS------- 391 (692)
Q Consensus 323 ~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~--~L~~L~l~~c~~~~~lp~------- 391 (692)
.+++|++|+|++|. +..++. ..+..+++|++|+|++|.++.+ ..+..+. +|++|++++|.....+|.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56788999999887 554432 3347899999999999998866 3445555 899999999775555541
Q ss_pred -ccccccCCEEec
Q 047027 392 -VAKLLALQYLDL 403 (692)
Q Consensus 392 -~~~l~~L~~L~l 403 (692)
+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 567889998873
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.16 E-value=0.00015 Score=66.82 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=37.4
Q ss_pred hcCCCCcEEEccCCCCcc-----CCccccCCCCCcEEEccCCCCCcC-----CC-cccccccCCEEec--ccCCCcc---
Q 047027 347 VHMHGLKVLNLSRTNIEV-----LPSSVSDLTNLRSLLLGMCGRLKR-----VP-SVAKLLALQYLDL--EATGIEE--- 410 (692)
Q Consensus 347 ~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~c~~~~~-----lp-~~~~l~~L~~L~l--~~~~l~~--- 410 (692)
...++|++|+|++|.+.. +...+....+|++|++++|. +.. +. .+...++|++|++ ++|.+..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 344556666666655541 22233334455555555532 221 11 2333444555555 4444431
Q ss_pred --cCccccCCCCCCEEEccCCCC
Q 047027 411 --VPEGMEMLENLSHLYLYLPLL 431 (692)
Q Consensus 411 --lp~~i~~l~~L~~L~l~~~~~ 431 (692)
+...+...++|++|+++.|.+
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCcCEEeccCCCC
Confidence 222333344555555554443
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.13 E-value=0.0017 Score=66.58 Aligned_cols=13 Identities=8% Similarity=-0.250 Sum_probs=8.3
Q ss_pred ccccccEEEeecC
Q 047027 299 WEENLERVSLMRN 311 (692)
Q Consensus 299 ~~~~l~~l~l~~~ 311 (692)
.+++++.|.+...
T Consensus 137 ~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 137 KFAHFEGLFWGDI 149 (362)
T ss_dssp HHTTCSEEEECCC
T ss_pred hcchhhheeecCc
Confidence 3567788877543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.0027 Score=66.18 Aligned_cols=125 Identities=13% Similarity=0.171 Sum_probs=85.2
Q ss_pred cccccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCC------------C----
Q 047027 298 EWEENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRT------------N---- 361 (692)
Q Consensus 298 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~------------~---- 361 (692)
..+.+++.+.+.. .+..++...|..|.+|+.+.+..+ +..++...|..+..|+.+.+..+ .
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 3457788888863 477888888888999999988755 66677666777777776655422 1
Q ss_pred -----CccC-CccccCCCCCcEEEccCCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEccC
Q 047027 362 -----IEVL-PSSVSDLTNLRSLLLGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYL 428 (692)
Q Consensus 362 -----~~~l-p~~i~~l~~L~~L~l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 428 (692)
+..+ ...+.++.+|+.+.+.. .+..++ .+.++.+|+.+.+..+ ++.++. .+.+...|+.+.+..
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccCccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1111 23466788999999875 345566 4888899999988764 555553 346667777766543
No 164
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.12 E-value=0.00037 Score=64.16 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=81.9
Q ss_pred HhhcCCCCcEEEccCC-CCc-----cCCccccCCCCCcEEEccCCCCCcC-----CC-cccccccCCEEecccCCCcc--
Q 047027 345 FFVHMHGLKVLNLSRT-NIE-----VLPSSVSDLTNLRSLLLGMCGRLKR-----VP-SVAKLLALQYLDLEATGIEE-- 410 (692)
Q Consensus 345 ~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~l~~c~~~~~-----lp-~~~~l~~L~~L~l~~~~l~~-- 410 (692)
.+...+.|+.|+|++| .+. .+...+....+|++|++++|. +.. +. .+...++|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3467888999999998 775 344566778899999999975 432 22 24556889999999998874
Q ss_pred ---cCccccCCCCCCEEEc--cCCCCCCCChhHHhhHHHhhhhhccccceeEEecCccc
Q 047027 411 ---VPEGMEMLENLSHLYL--YLPLLKKFPAALRETVEEAASLSDRLDSFEGHFFKLKD 464 (692)
Q Consensus 411 ---lp~~i~~l~~L~~L~l--~~~~~~~lp~~l~~~~~~l~~L~~~L~~L~~~~~~~~~ 464 (692)
+...+...++|++|++ ++|.++.-. .......+...+ .|+.|++..+.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~-~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNT-TLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCS-SCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCC-CcCEEeccCCCCCh
Confidence 4566778889999999 788876211 111223445556 78888887665543
No 165
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.0035 Score=65.04 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=123.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhhhhhhcc-chHHHHHHHHHHHHH-hCCeEEEEecCccCcC----C---cccccCCCCCC
Q 047027 2 WVTVSQPLDLFKLQTEIATALKQSLLEN-EDKVRRAGRLLGMLK-AKEKFVLILDDTWEAF----P---LEEVGIPEPNE 72 (692)
Q Consensus 2 wv~vs~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~-~~kr~LlVlDdv~~~~----~---~~~l~~~~~~~ 72 (692)
||......+...+...++.+++...... .........+.+.+. .+++.+||||+++... . +..+.......
T Consensus 83 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 83 YVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL 162 (387)
T ss_dssp EEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC
T ss_pred EEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc
Confidence 5555666677888888888886432211 112333444444442 3468999999998742 1 11122111111
Q ss_pred --CCCeEEEEEecchhh--------hcccccccee-eccCChHhHHHHHHhhhcC--CCCCCchhHHHHHHHHHHHhC--
Q 047027 73 --ENGCKLVITTRSHTV--------CRSMKCKQVV-VELLSKQEAFNLFIDGVGN--SILQVPALNKEIINEVVEECG-- 137 (692)
Q Consensus 73 --~~gs~IivTTR~~~v--------~~~~~~~~~~-l~~l~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~-- 137 (692)
..+..+|.||+.... ...++. ..+ +.+++.++...++...+.. .... -.++....++++++
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGE-VELVFPPYTAPQLRDILETRAEEAFNPGV---LDPDVVPLCAALAARE 238 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTS-EECCBCCCCHHHHHHHHHHHHHHHBCTTT---BCSSHHHHHHHHHHSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCC-eEEeeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHh
Confidence 345678888877632 222222 234 9999999999999987532 1111 11345677888887
Q ss_pred -CchhHH-HHHHHHhc-----C--CcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCC
Q 047027 138 -RLPLAI-VTVAASMS-----G--EEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPE 208 (692)
Q Consensus 138 -glPlal-~~~g~~L~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~ 208 (692)
|.|..+ ..+..+.. + .-+.+.++.++..... ..+.-++..|+ +..+..+..++....
T Consensus 239 ~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~-~~~~~~l~a~~~~~~ 304 (387)
T 2v1u_A 239 HGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLP-LHAKLVLLSIMMLED 304 (387)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHHHSS
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCC-HHHHHHHHHHHHHhc
Confidence 999433 33222211 1 1355566665554321 23445667787 666766666663322
Q ss_pred C-CccCHHHHHHHHHH----cCCcccchhhhhHHHhHHHHHHHHHhhcccccc
Q 047027 209 D-FAIPKDELIDYWIA----EGFIEEVKDVQAKYDRGHTILNRLVNCCLLESA 256 (692)
Q Consensus 209 ~-~~i~~~~l~~~w~a----~~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 256 (692)
+ ..+....+.+.... .| ... ........+++.|...+++...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 305 GGRPASTGEIYERYKELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp SSCCEEHHHHHHHHHHHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 2 23444433333211 12 111 1124556778999999998874
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.77 E-value=0.012 Score=60.97 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=46.9
Q ss_pred cccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCccccCCCCCcEEE
Q 047027 300 EENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPSSVSDLTNLRSLL 379 (692)
Q Consensus 300 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 379 (692)
..+++.+.+. ..++.++...|..|.+|+.+.+..+ +..++...|.++ .|..+.+.. .++.++.......+|+.+.
T Consensus 45 ~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEE
T ss_pred ccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCccccc
Confidence 3556666664 3466777777777788888877644 666666666666 455555543 2444443332334677776
Q ss_pred ccC
Q 047027 380 LGM 382 (692)
Q Consensus 380 l~~ 382 (692)
+..
T Consensus 120 lp~ 122 (379)
T 4h09_A 120 FPG 122 (379)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 167
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.58 E-value=0.032 Score=57.71 Aligned_cols=226 Identities=10% Similarity=0.015 Sum_probs=119.4
Q ss_pred EEEecCCC-CHHHHHHHHHHHhhhhhhc--cchHHHHHHHHHHHHHhCCeEEEEecCccCcC--Ccccc-cCC-CCCCCC
Q 047027 2 WVTVSQPL-DLFKLQTEIATALKQSLLE--NEDKVRRAGRLLGMLKAKEKFVLILDDTWEAF--PLEEV-GIP-EPNEEN 74 (692)
Q Consensus 2 wv~vs~~~-~~~~l~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~kr~LlVlDdv~~~~--~~~~l-~~~-~~~~~~ 74 (692)
||+.+... +...++.++++++...... ..........+.+.+ +.++.+||||+++... ++... ... +... .
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~ 163 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-A 163 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-S
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCCCCceeHHHHhcCC-c
Confidence 34444444 6667777777776321111 111123344444444 4445599999998742 11121 111 1111 6
Q ss_pred CeEEEEEecchhhhccc------ccccee-eccCChHhHHHHHHhhhcC--CCCCCchhHHHHHHHHHHHhC---Cchh-
Q 047027 75 GCKLVITTRSHTVCRSM------KCKQVV-VELLSKQEAFNLFIDGVGN--SILQVPALNKEIINEVVEECG---RLPL- 141 (692)
Q Consensus 75 gs~IivTTR~~~v~~~~------~~~~~~-l~~l~~~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---glPl- 141 (692)
+.+||+||+........ .....+ +++++.++..++|...+.. ..... .++....++++++ |.|.
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~ 240 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARK 240 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHH
Confidence 77899999876321111 111244 9999999999999987531 11111 1345667777887 8877
Q ss_pred HHHHHHHHh--c---CCcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCCCCccCHHH
Q 047027 142 AIVTVAASM--S---GEEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPEDFAIPKDE 216 (692)
Q Consensus 142 al~~~g~~L--~---~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~~~~i~~~~ 216 (692)
|+..+-.+. . ..-+.+.++.++.+... ..+..+++.|+ +..+..+..++. ... ...
T Consensus 241 a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~-~~~~~~l~al~~-~~~----~~~ 301 (384)
T 2qby_B 241 AVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALP-FHYKLALRSLIE-SED----VMS 301 (384)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHT-CCB----HHH
T ss_pred HHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------------chHHHHHHcCC-HHHHHHHHHHHH-hcc----cCh
Confidence 333333222 2 12356667766654421 23555677787 677777666665 111 011
Q ss_pred HH--HHHHHcCC-cccchhhhhHHHhHHHHHHHHHhhcccccc
Q 047027 217 LI--DYWIAEGF-IEEVKDVQAKYDRGHTILNRLVNCCLLESA 256 (692)
Q Consensus 217 l~--~~w~a~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 256 (692)
+. ..-+++.+ ... .......++++.|.+.+++...
T Consensus 302 ~~~~~~~~~~~~g~~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 302 AHKMYTDLCNKFKQKP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 21 11122211 111 1124456778999999999774
No 168
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.57 E-value=0.0019 Score=61.99 Aligned_cols=102 Identities=5% Similarity=0.013 Sum_probs=68.0
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchhhhc-cc-ccccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHTVCR-SM-KCKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~~-~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++.+||+||++.. +.++.+...+.....+.++|+||+...... .. .....+ +.+++.++..+++...+......
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~ 204 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 204 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46799999999764 334444443333346778888887654321 11 112334 99999999999999877543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHHHHh
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVAASM 150 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g~~L 150 (692)
-.++....++++|+|.|..+..+...+
T Consensus 205 ---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 205 ---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 124567889999999999988766443
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.53 E-value=0.016 Score=60.01 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=126.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHHH-hCCeEEEEecCccCcC--CcccccCCCCCC-C---
Q 047027 2 WVTVSQPLDLFKLQTEIATALKQSLLE-NEDKVRRAGRLLGMLK-AKEKFVLILDDTWEAF--PLEEVGIPEPNE-E--- 73 (692)
Q Consensus 2 wv~vs~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~-~--- 73 (692)
|+..+...+...+...++..++..... ..........+.+.+. .+++.+||||+++... .+..+...+... .
T Consensus 78 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 78 YINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp EEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSS
T ss_pred EEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCc
Confidence 445556667778888888877543221 1122333333333332 2468899999998752 233333222211 1
Q ss_pred CCeEEEEEecchhhhccccc------c-cee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHh---------
Q 047027 74 NGCKLVITTRSHTVCRSMKC------K-QVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEEC--------- 136 (692)
Q Consensus 74 ~gs~IivTTR~~~v~~~~~~------~-~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c--------- 136 (692)
.+..||+||++......... . ..+ +.+++.++...++...+...... ..-.++....+++++
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 236 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLDTN 236 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTCTT
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCCCC
Confidence 36678888887644332211 1 134 99999999999998875421000 012246778899999
Q ss_pred CCchhHHHHHHHHhc------CC--cCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCC-
Q 047027 137 GRLPLAIVTVAASMS------GE--EEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYP- 207 (692)
Q Consensus 137 ~glPlal~~~g~~L~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp- 207 (692)
+|.|..+..+..... +. .+.+....+..... ...+...+..|+ ...+.++..++.+.
T Consensus 237 ~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~-~~~~~~L~~l~~~~~ 302 (389)
T 1fnn_A 237 RGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLP-LHEKLFLLAIVRSLK 302 (389)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 788765544332211 11 12222222222211 122334456677 67777777676554
Q ss_pred --CCCccCHHHHHHHHHHc----CCcccchhhhhHHHhHHHHHHHHHhhccccccC
Q 047027 208 --EDFAIPKDELIDYWIAE----GFIEEVKDVQAKYDRGHTILNRLVNCCLLESAE 257 (692)
Q Consensus 208 --~~~~i~~~~l~~~w~a~----~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 257 (692)
.+..+....+...+... |... -.......++++|.+.+++....
T Consensus 303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 303 ISHTPYITFGDAEESYKIVCEEYGERP------RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHCSSCEEHHHHHHHHHHHHHHTTCCC------CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred hccCCCccHHHHHHHHHHHHHHcCCCC------CCHHHHHHHHHHHHhCCCeEEee
Confidence 22245555655544331 1111 01234567799999999998753
No 170
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.039 Score=56.91 Aligned_cols=230 Identities=11% Similarity=0.084 Sum_probs=114.1
Q ss_pred EEecCCCCHHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHHHh-CCeEEEEecCccCcC------CcccccCCCCC-CC
Q 047027 3 VTVSQPLDLFKLQTEIATALKQSLLE-NEDKVRRAGRLLGMLKA-KEKFVLILDDTWEAF------PLEEVGIPEPN-EE 73 (692)
Q Consensus 3 v~vs~~~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~~~l~~-~kr~LlVlDdv~~~~------~~~~l~~~~~~-~~ 73 (692)
|......+...+...++.+++..... ..........+.+.+.. +++.+||||+++... .+..+...... ..
T Consensus 82 i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 82 INTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK 161 (386)
T ss_dssp EEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC
Confidence 33334445555566655555332111 11122333444444432 358999999997632 12222211111 12
Q ss_pred CCeEEEEEecchhhhccccc-------ccee-eccCChHhHHHHHHhhhcCC--CCCCchhHHHHHHHHHHHhC---Cch
Q 047027 74 NGCKLVITTRSHTVCRSMKC-------KQVV-VELLSKQEAFNLFIDGVGNS--ILQVPALNKEIINEVVEECG---RLP 140 (692)
Q Consensus 74 ~gs~IivTTR~~~v~~~~~~-------~~~~-l~~l~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~---glP 140 (692)
.+..+|+||++......... ...+ +++++.++..+++...+... ... -..+....++++++ |.|
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~ 238 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV---LPDNVIKLCAALAAREHGDA 238 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---SCHHHHHHHHHHHHHTTCCH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhcCCH
Confidence 45677888887644322211 1234 99999999999999864311 112 22456677777777 998
Q ss_pred hHHHHHH-HHhc-----C--CcCHHHHHHHHHHHhhccccCCCchhhhhhhhhhccccCCChhhhHHHhHhcCCCC-C-C
Q 047027 141 LAIVTVA-ASMS-----G--EEEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDEKLQQCFLYCALYPE-D-F 210 (692)
Q Consensus 141 lal~~~g-~~L~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~~fl~la~fp~-~-~ 210 (692)
..+..+. .+.. + .-+.+.++.++.... ...+...+..++ ...+..+..++...+ + .
T Consensus 239 r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~ 304 (386)
T 2qby_A 239 RRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLP-FHSKLVLMAVVSISSEENV 304 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSC-HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCC
Confidence 8543332 2211 1 124455555444331 123455667777 666776666664322 2 1
Q ss_pred ccCHHHHHHHH--HHc--CCcccchhhhhHHHhHHHHHHHHHhhccccc
Q 047027 211 AIPKDELIDYW--IAE--GFIEEVKDVQAKYDRGHTILNRLVNCCLLES 255 (692)
Q Consensus 211 ~i~~~~l~~~w--~a~--~~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 255 (692)
.+....+.+.+ +++ | +.. ........+++.|.+.+++..
T Consensus 305 ~~~~~~l~~~~~~~~~~~g-~~~-----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 305 VSTTGAVYETYLNICKKLG-VEA-----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CEEHHHHHHHHHHHHHHHT-CCC-----CCHHHHHHHHHHHHHHTSEEE
T ss_pred ceeHHHHHHHHHHHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCEEE
Confidence 12333332221 111 1 111 011344567889999999866
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.06 E-value=0.06 Score=55.88 Aligned_cols=108 Identities=16% Similarity=0.279 Sum_probs=60.3
Q ss_pred ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEEccCCCCCcCCC--c
Q 047027 315 EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLLLGMCGRLKRVP--S 391 (692)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~c~~~~~lp--~ 391 (692)
.+....|..+.+|+.+.+... ...+....|.++..|+.+.+. +.++.++. .+.++.+|+.+.+.. .++.++ .
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~a 329 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDA 329 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTT
T ss_pred EcccceeeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhH
Confidence 344445556666666666543 344555555666666666664 23444433 355566666666653 345554 3
Q ss_pred ccccccCCEEecccCCCcccCc-cccCCCCCCEEEccC
Q 047027 392 VAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYLYL 428 (692)
Q Consensus 392 ~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 428 (692)
|.++.+|+.+.+.. +++.++. .+.++++|+.+.+.+
T Consensus 330 F~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 330 FAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESS
T ss_pred hhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECC
Confidence 66666666666643 3555543 345666666666644
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.97 E-value=0.034 Score=55.90 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=47.0
Q ss_pred CeEEEEEecchhhh-ccc--ccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHHHHh
Q 047027 75 GCKLVITTRSHTVC-RSM--KCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVAASM 150 (692)
Q Consensus 75 gs~IivTTR~~~v~-~~~--~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L 150 (692)
+.++|.||...... ... .....+ +.+++.+|...++...+...... -..+....++++++|.|..+..+...+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34666666543321 111 122344 89999999999998877543222 224667889999999999887766554
No 173
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.83 E-value=0.049 Score=46.37 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=29.3
Q ss_pred EEEeecCCcc--ccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 305 RVSLMRNNIE--EIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 305 ~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
.++.+++.++ .+|..+. ++++.|+|++|. +..++...|..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5554432 345566666664 555555555556666666665554
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.79 E-value=0.075 Score=54.75 Aligned_cols=120 Identities=14% Similarity=0.282 Sum_probs=70.5
Q ss_pred ccccEEEeecCCccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCCCccCCc-cccCCCCCcEEE
Q 047027 301 ENLERVSLMRNNIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTNIEVLPS-SVSDLTNLRSLL 379 (692)
Q Consensus 301 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 379 (692)
.+++.+.+.. .+..++...+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.++. .+.++.+|+.+.
T Consensus 217 ~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 217 KNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEE
T ss_pred cccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccccc
Confidence 4455555533 244455555556677777777654 55555555666777777776533 444433 356667777777
Q ss_pred ccCCCCCcCCC--cccccccCCEEecccCCCcccCc-cccCCCCCCEEEc
Q 047027 380 LGMCGRLKRVP--SVAKLLALQYLDLEATGIEEVPE-GMEMLENLSHLYL 426 (692)
Q Consensus 380 l~~c~~~~~lp--~~~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l 426 (692)
+.. ..++.++ .|.++.+|+.+.+.. +++.++. .+.++.+|+.+.+
T Consensus 293 l~~-~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 293 MDN-SAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred ccc-cccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEE
Confidence 764 3455555 466777777777753 3555553 3456666666665
No 175
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.20 E-value=0.038 Score=51.84 Aligned_cols=99 Identities=6% Similarity=0.067 Sum_probs=63.2
Q ss_pred CCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchhhh-ccc-ccccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHTVC-RSM-KCKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++.+||+||++... .++.+...+.....+.++|+||+..... ... .....+ +.+++.++..+++.+.+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 578899999998752 2333333333334677888888765422 111 111234 99999999999998876432212
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
-.++....+++.++|.|..+..+.
T Consensus 181 ---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 181 ---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 124567788899999998665443
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.70 E-value=0.13 Score=51.34 Aligned_cols=97 Identities=6% Similarity=0.056 Sum_probs=61.2
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchhh-hccc-ccccee-eccCChHhHHHHHHhhhcCCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHTV-CRSM-KCKQVV-VELLSKQEAFNLFIDGVGNSIL 119 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v-~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~ 119 (692)
.+++.+||+||++.. +.++.+...+.....+.++|+||+...- .+.. .-...+ +.+++.++..+++...+.....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 345889999999874 2344443333333467788888876432 1111 111244 9999999999999887643211
Q ss_pred CCchhHHHHHHHHHHHhCCchhHHH
Q 047027 120 QVPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 120 ~~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
. -.++.+..+++.++|.|..+.
T Consensus 185 ~---~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 185 K---YTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp C---BCHHHHHHHHHHHTTCHHHHH
T ss_pred C---CCHHHHHHHHHHcCCCHHHHH
Confidence 1 124567889999999996543
No 177
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.37 E-value=0.26 Score=41.78 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=15.2
Q ss_pred CCEEecccCCCcccCcc-ccCCCCCCEEEccCCCC
Q 047027 398 LQYLDLEATGIEEVPEG-MEMLENLSHLYLYLPLL 431 (692)
Q Consensus 398 L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 431 (692)
|++|+|++|.|+.+|.+ +..+++|+.|+|.+|.+
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444433 23344455555544443
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.33 E-value=0.51 Score=47.07 Aligned_cols=101 Identities=7% Similarity=0.024 Sum_probs=64.3
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchhhh-cccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHTVC-RSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~v~-~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++.++|+|+++.. +.++.+...+.....+.++|+||....-. +... -...+ +.+++.++...++...+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 56889999999874 33444443333334677888888764321 1111 11234 89999999999998876543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVAAS 149 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g~~ 149 (692)
-.++....+++.++|.|..+..+...
T Consensus 189 ---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 189 ---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp ---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 22456788899999999876554433
No 179
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.27 E-value=2.8 Score=41.32 Aligned_cols=98 Identities=6% Similarity=0.081 Sum_probs=62.5
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh-hhccc-ccccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT-VCRSM-KCKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++.++|+|+++.. +..+.+...+.....+.++|+||.... +.+.. .-...+ +.+++.++...++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999764 234445544444446778888886644 21111 111234 89999999999998776543222
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
-..+....+++.++|.+..+...
T Consensus 181 ---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 181 ---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp ---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12456778888999988765443
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.61 E-value=1.1 Score=45.47 Aligned_cols=99 Identities=5% Similarity=0.012 Sum_probs=61.1
Q ss_pred CCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh-hhcccc-cccee-eccCChHhHHHHHHhhhcCCCCC
Q 047027 46 KEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT-VCRSMK-CKQVV-VELLSKQEAFNLFIDGVGNSILQ 120 (692)
Q Consensus 46 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~-~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~ 120 (692)
+++.+||+||++.. ..++.+...+.....+..+|++|.+.. +..... -...+ +.+++.++...++.+.+......
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999764 223444333333335667777776543 222111 11334 89999999999998765322111
Q ss_pred CchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 121 VPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 121 ~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
-..+.+..+++.++|.|..+..+.
T Consensus 198 ---~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 198 ---HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp ---BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 124567789999999998876554
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.30 E-value=13 Score=35.51 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCeEEEEecCccCcC---------C---ccccc---CCCCCCCCCeEEEEEecchhhhcc--c-c-cccee
Q 047027 37 GRLLGMLKAKEKFVLILDDTWEAF---------P---LEEVG---IPEPNEENGCKLVITTRSHTVCRS--M-K-CKQVV 97 (692)
Q Consensus 37 ~~~~~~l~~~kr~LlVlDdv~~~~---------~---~~~l~---~~~~~~~~gs~IivTTR~~~v~~~--~-~-~~~~~ 97 (692)
..+.+.....+..+|+||+++... + .+.+. ......+....||.||........ . + ....+
T Consensus 114 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i 193 (272)
T 1d2n_A 114 KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTI 193 (272)
T ss_dssp HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEE
T ss_pred HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEE
Confidence 344444444568899999986530 1 11222 211112344567777877644332 1 1 12333
Q ss_pred -eccCCh-HhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCC------chhHHHHHHHHhcCCcCHHHHHHHHHHHhhc
Q 047027 98 -VELLSK-QEAFNLFIDGVGNSILQVPALNKEIINEVVEECGR------LPLAIVTVAASMSGEEEIHEWRNALNELRGL 169 (692)
Q Consensus 98 -l~~l~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlal~~~g~~L~~~~~~~~w~~~~~~l~~~ 169 (692)
+++++. ++...++..... . ..+....+++.+.| +.-++..+-.+- .......++.++..+.+.
T Consensus 194 ~~p~l~~r~~i~~i~~~~~~---~-----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~-~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 194 HVPNIATGEQLLEALELLGN---F-----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL-QMDPEYRVRKFLALLREE 264 (272)
T ss_dssp ECCCEEEHHHHHHHHHHHTC---S-----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT-TSCGGGHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHHHHhcCC---C-----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHh-hhchHHHHHHHHHHHHHc
Confidence 777877 666666655321 1 13456778888877 445444444333 223456677777766544
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.46 E-value=6.2 Score=38.95 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=74.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHH--HhCCeEEEEecCccCcCCcccccCCCC----CCCCCeEEEE
Q 047027 7 QPLDLFKLQTEIATALKQSLLENEDKVRRAGRLLGML--KAKEKFVLILDDTWEAFPLEEVGIPEP----NEENGCKLVI 80 (692)
Q Consensus 7 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~~----~~~~gs~Iiv 80 (692)
.-.+...+...|.+++.................++.. ..++.+++|||+++...+-+.+...+. ..++. .||.
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~-~vI~ 168 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKL-SIIC 168 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCE-EEEE
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcE-EEEE
Confidence 3345667788888888543211111223334444443 245689999999987542121111111 11222 3333
Q ss_pred Eecchhh---------hccccccceeeccCChHhHHHHHHhhhcCC--C-------------------------------
Q 047027 81 TTRSHTV---------CRSMKCKQVVVELLSKQEAFNLFIDGVGNS--I------------------------------- 118 (692)
Q Consensus 81 TTR~~~v---------~~~~~~~~~~l~~l~~~~~~~Lf~~~~~~~--~------------------------------- 118 (692)
++.+.+. ..+++...+.+.+.+.+|-.+++.+++... .
T Consensus 169 i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (318)
T 3te6_A 169 VGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIV 248 (318)
T ss_dssp ECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEE
T ss_pred EecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence 3433221 122322223399999999999998775321 0
Q ss_pred ---CCCchhHHHHHHHHHHHhCCchhHHHHHHHHh
Q 047027 119 ---LQVPALNKEIINEVVEECGRLPLAIVTVAASM 150 (692)
Q Consensus 119 ---~~~~~~~~~~~~~i~~~c~glPlal~~~g~~L 150 (692)
.-.+...+-.|++++...|-.-.|+.++-.+.
T Consensus 249 ~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 249 INHKINNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp ECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 01233455666777777777888877655433
No 183
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.88 E-value=4 Score=37.05 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=17.4
Q ss_pred ccCCEEecccCCCcc-----cCccccCCCCCCEEEccCC
Q 047027 396 LALQYLDLEATGIEE-----VPEGMEMLENLSHLYLYLP 429 (692)
Q Consensus 396 ~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~ 429 (692)
+.|++|+|++|.|.. +-+.+..=+.|+.|+++++
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 445566665555541 2233334445777776543
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=72.69 E-value=1.2 Score=41.80 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=55.4
Q ss_pred CeEEEEecCccCcCC----cccccCCCCC-CCCC-eEEEEEecchh---------hhcccccccee-eccCChHhHHHHH
Q 047027 47 EKFVLILDDTWEAFP----LEEVGIPEPN-EENG-CKLVITTRSHT---------VCRSMKCKQVV-VELLSKQEAFNLF 110 (692)
Q Consensus 47 kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~g-s~IivTTR~~~---------v~~~~~~~~~~-l~~l~~~~~~~Lf 110 (692)
+..+||+||++.... .+.+...+.. ...+ .+||+||+... +...+.....+ +.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 356889999976422 1222211110 0112 24777776432 11111111344 9999999999999
Q ss_pred HhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 111 IDGVGNSILQVPALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
...+...... -.++....+++.++|.+-.+..+.
T Consensus 184 ~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 184 QRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHHHH
Confidence 8876432222 124567788889999887665443
No 185
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.61 E-value=3.9 Score=37.14 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=39.2
Q ss_pred cCCCCcEEEccCCCCc-----cCCccccCCCCCcEEEccCCCCCcCCC------cccccccCCEEecccCCC---c----
Q 047027 348 HMHGLKVLNLSRTNIE-----VLPSSVSDLTNLRSLLLGMCGRLKRVP------SVAKLLALQYLDLEATGI---E---- 409 (692)
Q Consensus 348 ~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~c~~~~~lp------~~~~l~~L~~L~l~~~~l---~---- 409 (692)
.-..|+.|+|++|.+. .+-+.+..-..|+.|+|++| .+..-. .+..=+.|++|+++++.. .
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 3445566666655554 12222233345666666653 222111 122334577777765422 1
Q ss_pred -ccCccccCCCCCCEEEccCCC
Q 047027 410 -EVPEGMEMLENLSHLYLYLPL 430 (692)
Q Consensus 410 -~lp~~i~~l~~L~~L~l~~~~ 430 (692)
.+-..+..=++|..|++..+.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhCCCcCeEeccCCC
Confidence 122334444678888876554
No 186
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=65.65 E-value=7.8 Score=38.61 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=63.2
Q ss_pred HHHHHHHHHH----hCCeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchh-hhccccc-ccee-eccCChHh
Q 047027 35 RAGRLLGMLK----AKEKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHT-VCRSMKC-KQVV-VELLSKQE 105 (692)
Q Consensus 35 ~~~~~~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~~-~~~~-l~~l~~~~ 105 (692)
.++.+.+... .+++-++|+|+++... ..+++...+..-..+..+|++|.+.+ +.+.... ...+ +.+++.++
T Consensus 92 ~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~ 171 (334)
T 1a5t_A 92 AVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQY 171 (334)
T ss_dssp HHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred HHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHH
Confidence 3445555542 2467889999998752 23334333333335677777776643 3332211 1234 89999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 106 AFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 106 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
..+.+.+... . .++.+..+++.++|.|..+..
T Consensus 172 ~~~~L~~~~~---~-----~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 172 AVTWLSREVT---M-----SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp HHHHHHHHCC---C-----CHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcC---C-----CHHHHHHHHHHcCCCHHHHHH
Confidence 9998887751 1 134567889999999976644
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=59.41 E-value=14 Score=35.63 Aligned_cols=107 Identities=8% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCeEEEEecCccCcC------------C----cccccCCCC--CCCCCeEEEEEecchhhhcc-----c
Q 047027 35 RAGRLLGMLKAKEKFVLILDDTWEAF------------P----LEEVGIPEP--NEENGCKLVITTRSHTVCRS-----M 91 (692)
Q Consensus 35 ~~~~~~~~l~~~kr~LlVlDdv~~~~------------~----~~~l~~~~~--~~~~gs~IivTTR~~~v~~~-----~ 91 (692)
....+.+.....+..+|+||+++... . +..+...+. ....+..||.||........ .
T Consensus 98 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~ 177 (285)
T 3h4m_A 98 LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPG 177 (285)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTT
T ss_pred HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCC
Confidence 34444455545567899999996530 0 111111111 12246678888875543321 1
Q ss_pred ccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCC-chhHHHH
Q 047027 92 KCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGR-LPLAIVT 145 (692)
Q Consensus 92 ~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~ 145 (692)
.....+ +..++.++..+++...+.......... ...+++.+.| .|-.+..
T Consensus 178 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred cCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 122234 889999999999988876542221112 3556666666 4544433
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.93 E-value=5.2 Score=40.18 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=57.5
Q ss_pred CeEEEEecCccCcCC--cccccCCCCCCCCCeEEEEEecchh-hhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEAFP--LEEVGIPEPNEENGCKLVITTRSHT-VCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
++-++|+|++...+. .+.+...+.....+.+||+||.+.. +.+.... ...+ +.+++.++..+.+.+.+......
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ- 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-
Confidence 456999999977422 2222222211224677887776633 2222211 1334 89999999999998776432111
Q ss_pred chhH-HHHHHHHHHHhCCchhHHHHHH
Q 047027 122 PALN-KEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 122 ~~~~-~~~~~~i~~~c~glPlal~~~g 147 (692)
-. ++.+..+++.++|.+..+..+.
T Consensus 213 --~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 --LETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp --ECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 3466788899999887665443
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=54.82 E-value=13 Score=37.08 Aligned_cols=98 Identities=7% Similarity=0.026 Sum_probs=58.5
Q ss_pred CeEEEEecCccCcC--CcccccCCCCCCCCCeEEEEEecchh-hhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEAF--PLEEVGIPEPNEENGCKLVITTRSHT-VCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
++-+|++|+++... ....+...+.......++|++|.... +.+.... ...+ +.+++.++....+...+......
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~- 211 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK- 211 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC-
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC-
Confidence 45699999987642 22333322222234567777775432 2222111 1234 88999999999988876443222
Q ss_pred chhHHHHHHHHHHHhCCchhHHHHHH
Q 047027 122 PALNKEIINEVVEECGRLPLAIVTVA 147 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal~~~g 147 (692)
-.++....+++.++|.|..+..+.
T Consensus 212 --i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 212 --CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp --CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 124677889999999998755443
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=54.68 E-value=4.7 Score=42.07 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=56.5
Q ss_pred CeEEEEecCccCcCC----cccccCCCCC-CCCCeEEEEEecch---------hhhcccccccee-eccCChHhHHHHHH
Q 047027 47 EKFVLILDDTWEAFP----LEEVGIPEPN-EENGCKLVITTRSH---------TVCRSMKCKQVV-VELLSKQEAFNLFI 111 (692)
Q Consensus 47 kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gs~IivTTR~~---------~v~~~~~~~~~~-l~~l~~~~~~~Lf~ 111 (692)
+.-+|+|||++.... .+.+...+.. ...|..||+||.+. .+..++.....+ +++++.++-..++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~ 273 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHH
Confidence 467999999976432 1222211110 12567888888762 222223323345 89999999999998
Q ss_pred hhhcCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 112 DGVGNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
+.+.......+ ++....|++.++|.+-.+..
T Consensus 274 ~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 274 KMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 87643222211 23466788888888765543
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=52.74 E-value=55 Score=32.01 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCeEEEEecCccCcCC-------------cccccCC---CCCCCCCeEEEEEecchhhhcc-c--cccc
Q 047027 35 RAGRLLGMLKAKEKFVLILDDTWEAFP-------------LEEVGIP---EPNEENGCKLVITTRSHTVCRS-M--KCKQ 95 (692)
Q Consensus 35 ~~~~~~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs~IivTTR~~~v~~~-~--~~~~ 95 (692)
....+.+.....+..+|+||+++.... ...+... ......+..||.||........ . ....
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 177 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCE
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCe
Confidence 344455555455678999999985311 1111111 1112345566667765433221 1 1222
Q ss_pred ee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCc-hhHHHHHH
Q 047027 96 VV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRL-PLAIVTVA 147 (692)
Q Consensus 96 ~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~g 147 (692)
.+ +...+.++-.+++...+....... -......+++++.|. +-.|..+.
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33 788899999999998876543221 134567788888774 54454433
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=49.91 E-value=52 Score=32.80 Aligned_cols=109 Identities=12% Similarity=0.147 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCeEEEEecCccCcCC-------------cccccCCCC----CCCCCeEEEEEecchhhhc-cc--cccc
Q 047027 36 AGRLLGMLKAKEKFVLILDDTWEAFP-------------LEEVGIPEP----NEENGCKLVITTRSHTVCR-SM--KCKQ 95 (692)
Q Consensus 36 ~~~~~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~----~~~~gs~IivTTR~~~v~~-~~--~~~~ 95 (692)
...+.......+..+|+||+++.... ...+...+. ....+..||.||....... .. ....
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~ 244 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK 244 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCE
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCce
Confidence 33444444345678999999954310 111111111 1123445666665432211 11 2222
Q ss_pred ee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCC-chhHHHHHH
Q 047027 96 VV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGR-LPLAIVTVA 147 (692)
Q Consensus 96 ~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~g 147 (692)
.+ +...+.++...++...+...... -.+.....+++.+.| .+-++..+.
T Consensus 245 ~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 245 RLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33 78888888888887776443222 113567788888888 455555544
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=49.47 E-value=65 Score=31.55 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCeEEEEecCccCcCC-------------cccccCC---CCCCCCCeEEEEEecchhhhcc-c--cccc
Q 047027 35 RAGRLLGMLKAKEKFVLILDDTWEAFP-------------LEEVGIP---EPNEENGCKLVITTRSHTVCRS-M--KCKQ 95 (692)
Q Consensus 35 ~~~~~~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~---~~~~~~gs~IivTTR~~~v~~~-~--~~~~ 95 (692)
....+.+.....+..+|+||+++.... ...+... +.....+-.||.||........ . ....
T Consensus 93 ~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~ 172 (322)
T 1xwi_A 93 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEK 172 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCE
T ss_pred HHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCe
Confidence 344555555456788999999976410 0011111 1111245556666654332211 1 2223
Q ss_pred ee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCc-hhHHHHHH
Q 047027 96 VV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRL-PLAIVTVA 147 (692)
Q Consensus 96 ~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~g 147 (692)
.+ +...+.++-..++.......... ..+.....+++++.|. +-.|..+.
T Consensus 173 ~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 173 RIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33 88888898899998876543222 1234567788888886 44455444
No 194
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.67 E-value=18 Score=28.54 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=31.5
Q ss_pred CccccCCCCCCCCCCccEEEccCCCccCCCchhHhhcCCCCcEEEccCCC
Q 047027 312 NIEEIPSNMSPHCEILSTLLLQRNGLLQRIPECFFVHMHGLKVLNLSRTN 361 (692)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 361 (692)
.+..+....|..|.+|+.+.+..+ +..+....|.++.+|+.+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 445566666667777777777655 566666666777777777666543
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=46.31 E-value=70 Score=31.84 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCeEEEEecCccCcCC-------------cccccCCC---CCCCCCeEEEEEecchhhhc-cc--ccccee
Q 047027 37 GRLLGMLKAKEKFVLILDDTWEAFP-------------LEEVGIPE---PNEENGCKLVITTRSHTVCR-SM--KCKQVV 97 (692)
Q Consensus 37 ~~~~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~---~~~~~gs~IivTTR~~~v~~-~~--~~~~~~ 97 (692)
..+.+.....+..+|+||+++.... ...+...+ .....+..||.||....... .. .....+
T Consensus 133 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 212 (355)
T 2qp9_X 133 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRI 212 (355)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEE
Confidence 3444444445688999999986421 11111111 11124556666775443221 11 222333
Q ss_pred -eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCC-chhHHHHHH
Q 047027 98 -VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGR-LPLAIVTVA 147 (692)
Q Consensus 98 -l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~g 147 (692)
+...+.++-..++........... -......+++++.| .+-.|..+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888889999999988775542221 13456778888887 454454443
No 196
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=44.45 E-value=38 Score=33.51 Aligned_cols=98 Identities=9% Similarity=-0.057 Sum_probs=59.6
Q ss_pred hCCeEEEEecCccC-c--CCcccccCCCCCCCCCeEEEEEecc-------hhhhcccc-cccee-eccCChHhHHHHHHh
Q 047027 45 AKEKFVLILDDTWE-A--FPLEEVGIPEPNEENGCKLVITTRS-------HTVCRSMK-CKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 45 ~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IivTTR~-------~~v~~~~~-~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
.+++-++|+|++.. . +.++++...+..-.+++.+|++|.+ ..+.+... ....+ ..+++.++......+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35677889999865 2 4455555444433467787777643 23333322 22344 888888888877776
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhHHHH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLAIVT 145 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 145 (692)
.+...... -..+.+..+++.++|...++..
T Consensus 154 ~~~~~g~~---i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 154 RAKQLNLE---LDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHTTCE---ECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHcCCC---CCHHHHHHHHHHhchHHHHHHH
Confidence 65332211 1245677888888988776654
No 197
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.21 E-value=16 Score=38.96 Aligned_cols=96 Identities=7% Similarity=0.048 Sum_probs=53.0
Q ss_pred CCeEEEEecCccCcCC-----cccccCCCCCCCCCeEEEEEecchh---hhcccccccee-eccCChHhHHHHHHhhhcC
Q 047027 46 KEKFVLILDDTWEAFP-----LEEVGIPEPNEENGCKLVITTRSHT---VCRSMKCKQVV-VELLSKQEAFNLFIDGVGN 116 (692)
Q Consensus 46 ~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~IivTTR~~~---v~~~~~~~~~~-l~~l~~~~~~~Lf~~~~~~ 116 (692)
+++.+|+||+++.... +..+...+.. .+..||++|.+.. +.........+ +.+++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4678999999976422 1222221111 2334666655432 21111112234 8899999999988876643
Q ss_pred CCCCCchhHHHHHHHHHHHhCCch-hHHHHH
Q 047027 117 SILQVPALNKEIINEVVEECGRLP-LAIVTV 146 (692)
Q Consensus 117 ~~~~~~~~~~~~~~~i~~~c~glP-lal~~~ 146 (692)
...... ++....|++.++|.+ -++..+
T Consensus 225 ~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 225 EKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred cCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 222211 234678889999854 444444
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=41.06 E-value=1.3e+02 Score=30.98 Aligned_cols=107 Identities=11% Similarity=0.152 Sum_probs=58.4
Q ss_pred HHHHHHHhCCeEEEEecCccCcCC-------------cccccCCCCC---CCCCeEEEEEecchhhhcc-c--ccccee-
Q 047027 38 RLLGMLKAKEKFVLILDDTWEAFP-------------LEEVGIPEPN---EENGCKLVITTRSHTVCRS-M--KCKQVV- 97 (692)
Q Consensus 38 ~~~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~gs~IivTTR~~~v~~~-~--~~~~~~- 97 (692)
.+.+.....+..+|+||+++.... ...+...+.. ...+..||.||........ . .....+
T Consensus 218 ~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 297 (444)
T 2zan_A 218 NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIY 297 (444)
T ss_dssp HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEE
Confidence 334444345678999999986410 0112222222 1345567767755432211 1 222233
Q ss_pred eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCc-hhHHHHHH
Q 047027 98 VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRL-PLAIVTVA 147 (692)
Q Consensus 98 l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~g 147 (692)
+...+.++-..+|........... .......+++.+.|. +-.|..+.
T Consensus 298 i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 298 IPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 778888888889888775432211 134567788888884 44554443
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.23 E-value=1.1e+02 Score=31.47 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred hCCeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh--hhccc-ccccee-eccCChHhHHHHHHhhhcCCC
Q 047027 45 AKEKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT--VCRSM-KCKQVV-VELLSKQEAFNLFIDGVGNSI 118 (692)
Q Consensus 45 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~--v~~~~-~~~~~~-l~~l~~~~~~~Lf~~~~~~~~ 118 (692)
.+++.+|+||++... .+.+.+...+.. +.-.-|..||.+.. +.... .-...+ +.+++.++...++.+.+....
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHh
Confidence 457889999999774 344444444432 22223333554432 11111 112244 999999999999988764310
Q ss_pred ----CCCchhHHHHHHHHHHHhCCchhHHHHH
Q 047027 119 ----LQVPALNKEIINEVVEECGRLPLAIVTV 146 (692)
Q Consensus 119 ----~~~~~~~~~~~~~i~~~c~glPlal~~~ 146 (692)
.....-.++....++++++|.+..+..+
T Consensus 183 ~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 183 RGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 0111123567788888899987765443
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=36.59 E-value=1.2e+02 Score=30.47 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCeEEEEecCccCcC--------C-----cccccCCCC----CCCCCeEEEEEecchhhhc-cc--cccce
Q 047027 37 GRLLGMLKAKEKFVLILDDTWEAF--------P-----LEEVGIPEP----NEENGCKLVITTRSHTVCR-SM--KCKQV 96 (692)
Q Consensus 37 ~~~~~~l~~~kr~LlVlDdv~~~~--------~-----~~~l~~~~~----~~~~gs~IivTTR~~~v~~-~~--~~~~~ 96 (692)
..+++.....+..+|+||+++... . ...+...+. .....-+||.||....... .. .....
T Consensus 197 ~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~ 276 (389)
T 3vfd_A 197 RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276 (389)
T ss_dssp HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEE
T ss_pred HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceE
Confidence 344444434456899999997531 0 001111110 0113345665665433221 11 22222
Q ss_pred e-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchh-HHHHH
Q 047027 97 V-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPL-AIVTV 146 (692)
Q Consensus 97 ~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~ 146 (692)
+ +...+.++-..++...+...... -..+....+++.+.|..- ++..+
T Consensus 277 i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 277 VYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 88889999999988777543222 123466788888888554 44443
No 201
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=34.73 E-value=89 Score=29.08 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCeEEEEecCccCcC-------------Cc----ccccCCCCC--CCCCeEEEEEecchhhhcc-c----
Q 047027 36 AGRLLGMLKAKEKFVLILDDTWEAF-------------PL----EEVGIPEPN--EENGCKLVITTRSHTVCRS-M---- 91 (692)
Q Consensus 36 ~~~~~~~l~~~kr~LlVlDdv~~~~-------------~~----~~l~~~~~~--~~~gs~IivTTR~~~v~~~-~---- 91 (692)
...+.+........+|+||+++... .. ..+...+.. ...+..||.||........ .
T Consensus 87 ~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~ 166 (262)
T 2qz4_A 87 VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPG 166 (262)
T ss_dssp HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTT
T ss_pred HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCC
Confidence 3344444444457899999997641 11 112111111 1235567777755442211 1
Q ss_pred ccccee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchh-HHHHH
Q 047027 92 KCKQVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPL-AIVTV 146 (692)
Q Consensus 92 ~~~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~ 146 (692)
.....+ +...+.++-.+++...+....... ........+++.+.|.+- .+..+
T Consensus 167 R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp SCCEEEECCSCCHHHHHHHHHHHHHHTTCCB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 112333 888899999999887764332221 112234677777777653 44333
No 202
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.34 E-value=46 Score=33.19 Aligned_cols=45 Identities=2% Similarity=-0.057 Sum_probs=31.9
Q ss_pred eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhC-CchhHHHH
Q 047027 98 VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECG-RLPLAIVT 145 (692)
Q Consensus 98 l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlal~~ 145 (692)
+.+++.++...++...+...... -.++....+++++. |.|..+..
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~---~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVE---MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhcCCCHHHHHH
Confidence 89999999999998776443222 22456788888887 77765543
No 203
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.92 E-value=31 Score=33.85 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=50.7
Q ss_pred eEEEEecCccCcCC---c-ccccCCCCC-CCCCeEEEEEecchh---------hhcccccccee-eccCChHhHHHHHHh
Q 047027 48 KFVLILDDTWEAFP---L-EEVGIPEPN-EENGCKLVITTRSHT---------VCRSMKCKQVV-VELLSKQEAFNLFID 112 (692)
Q Consensus 48 r~LlVlDdv~~~~~---~-~~l~~~~~~-~~~gs~IivTTR~~~---------v~~~~~~~~~~-l~~l~~~~~~~Lf~~ 112 (692)
..+|+||++..... + +.+...+.. ...|.+||+||.... +...+.....+ +++ +.++...++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56899999976431 1 122211110 124557888875421 12222222345 888 99999999988
Q ss_pred hhcCCCCCCchhHHHHHHHHHHHhCCchhH
Q 047027 113 GVGNSILQVPALNKEIINEVVEECGRLPLA 142 (692)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~i~~~c~glPla 142 (692)
.+.......+ ++....+++++ |..-.
T Consensus 178 ~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 178 KLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred HHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 7753322212 45567788888 66544
No 204
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=26.86 E-value=2.3e+02 Score=22.11 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=33.0
Q ss_pred CCeEEEEEecchhhhccc-------cccceeeccCCh----HhHHHHHHhhhcCC-CCCCchhHHHHHHHHHHHhCCc
Q 047027 74 NGCKLVITTRSHTVCRSM-------KCKQVVVELLSK----QEAFNLFIDGVGNS-ILQVPALNKEIINEVVEECGRL 139 (692)
Q Consensus 74 ~gs~IivTTR~~~v~~~~-------~~~~~~l~~l~~----~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~i~~~c~gl 139 (692)
-.-.+||||-++...+.+ |.....+-.=.+ .+|-+-|..-.-.. ......++-+..++++++.|.+
T Consensus 78 ldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsdkeelieqvrrfvrkvgsl 155 (162)
T 2l82_A 78 LDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVRRFVRKVGSL 155 (162)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred CcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCCHHHHHHHHHHHHHHhccc
Confidence 456889999987654432 222221222222 33444443221111 2334456667777888877754
No 205
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=26.50 E-value=34 Score=33.18 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=40.3
Q ss_pred CeEEEEecCccCc-----------CCcccccCCCCCCCCCeEEEEEecchh----------hhcccccccee-eccCChH
Q 047027 47 EKFVLILDDTWEA-----------FPLEEVGIPEPNEENGCKLVITTRSHT----------VCRSMKCKQVV-VELLSKQ 104 (692)
Q Consensus 47 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IivTTR~~~----------v~~~~~~~~~~-l~~l~~~ 104 (692)
+..+|+||+++.. +....+...+.....+.+||.||.... +..++ ...+ +.+++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 3458999999843 112233332323334567888875432 22222 2334 8999999
Q ss_pred hHHHHHHhhhcC
Q 047027 105 EAFNLFIDGVGN 116 (692)
Q Consensus 105 ~~~~Lf~~~~~~ 116 (692)
+-..++...+..
T Consensus 208 ~~~~il~~~l~~ 219 (309)
T 3syl_A 208 ELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877643
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.49 E-value=2.7e+02 Score=26.25 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCeEEEEecCccCcCCc---------c----ccc---CCCCC--CCCCeEEEEEecchhhhcc-c--ccc
Q 047027 36 AGRLLGMLKAKEKFVLILDDTWEAFPL---------E----EVG---IPEPN--EENGCKLVITTRSHTVCRS-M--KCK 94 (692)
Q Consensus 36 ~~~~~~~l~~~kr~LlVlDdv~~~~~~---------~----~l~---~~~~~--~~~gs~IivTTR~~~v~~~-~--~~~ 94 (692)
...+.......+..+|+||+++....- . .+. ...+. .+.+..||.||........ . ...
T Consensus 102 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~ 181 (297)
T 3b9p_A 102 VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181 (297)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCC
T ss_pred HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCC
Confidence 334444444456789999999763110 0 011 11111 1234567777765432211 1 112
Q ss_pred cee-eccCChHhHHHHHHhhhcCCCCCCchhHHHHHHHHHHHhCCchh-HHHHHH
Q 047027 95 QVV-VELLSKQEAFNLFIDGVGNSILQVPALNKEIINEVVEECGRLPL-AIVTVA 147 (692)
Q Consensus 95 ~~~-l~~l~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~g 147 (692)
..+ +...+.++-..++...+...... -.......+++.+.|.+- ++..+.
T Consensus 182 ~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 182 KRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 233 77777888888887765432221 113456778888888775 444433
No 207
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=26.09 E-value=33 Score=33.64 Aligned_cols=96 Identities=7% Similarity=0.120 Sum_probs=49.8
Q ss_pred CeEEEEecCccCcC---CcccccCCCCCCCCCeEEEEEecchhh-hccccc-ccee-eccCChHhHHHHH-------Hhh
Q 047027 47 EKFVLILDDTWEAF---PLEEVGIPEPNEENGCKLVITTRSHTV-CRSMKC-KQVV-VELLSKQEAFNLF-------IDG 113 (692)
Q Consensus 47 kr~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IivTTR~~~v-~~~~~~-~~~~-l~~l~~~~~~~Lf-------~~~ 113 (692)
++.+|++|+++... +.+.+...+.....+.+||+||....- .+.... -..+ +++++.++-.+++ ...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~ 184 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEI 184 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999998753 233333222222245678888766432 111111 1234 8888887743332 222
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhCCchhHHH
Q 047027 114 VGNSILQVPALNKEIINEVVEECGRLPLAIV 144 (692)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 144 (692)
+.......++ .+....+++.++|....+.
T Consensus 185 ~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 185 CKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred HHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 2211111111 2567778888888766443
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.17 E-value=1.1e+02 Score=30.00 Aligned_cols=94 Identities=7% Similarity=0.012 Sum_probs=52.8
Q ss_pred CeEEEEecCccCc--CCcccccCCCCCCCCCeEEEEEecchh-hhccccc-ccee-eccCChHhHHHHHHhhhcCCCCCC
Q 047027 47 EKFVLILDDTWEA--FPLEEVGIPEPNEENGCKLVITTRSHT-VCRSMKC-KQVV-VELLSKQEAFNLFIDGVGNSILQV 121 (692)
Q Consensus 47 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IivTTR~~~-v~~~~~~-~~~~-l~~l~~~~~~~Lf~~~~~~~~~~~ 121 (692)
.+-++|+|+++.. ++.+++...+.......++|++|.... +.+.... ...+ +.+++.++..+.+...+......
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~- 188 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK- 188 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-
Confidence 4678999999753 222233222222224567777765432 2111111 1234 88899998888887665322111
Q ss_pred chhHHHHHHHHHHHhCCchhHH
Q 047027 122 PALNKEIINEVVEECGRLPLAI 143 (692)
Q Consensus 122 ~~~~~~~~~~i~~~c~glPlal 143 (692)
-.++....+++.++|.+-.+
T Consensus 189 --i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 189 --LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp --BCHHHHHHHHHHHTTCHHHH
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 12456778889999988644
Done!