BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047029
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 198 INLDHPST-FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSS 256
IN + P+ F +A + K+ +++ +D F+K E Y+ +G +G LL GPPGTGK+
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 257 LIAAMANYLKFDIYDMEXXX-----XXXXXXXXXXXVSTGNR---SILVIEDIDCSIELE 308
L A+A + M T + SI+ I++ID +
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI--GK 117
Query: 309 NRQCGG---GYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRM 365
+R GG G DE + TL+ LL +DG S I++ TN E LDPAL+RPGR
Sbjct: 118 SRAAGGVVSGNDE--REQTLNQLLAEMDGFGSENA-PVIVLAATNRPEILDPALMRPGRF 174
Query: 366 DMHI 369
D +
Sbjct: 175 DRQV 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSL---IAAMANYLKF-----DIYDMEXXXX 277
F+K ++R+G +G LL GPPGTGK+ L +A AN F D ++
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG+DE TL+ LL +DG S
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ--TLNQLLVEMDGFDS 151
Query: 338 SCGDERIIVFTTNYKERLDPALLRPGRMDMHI 369
G I++ TN + LDPALLRPGR D I
Sbjct: 152 KEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Query: 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--------IYDMEXXXXX 278
+K E + RVG +G LLYGPPGTGK+ L A+A + + I D
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260
Query: 279 XXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNS-QVTLSGLLNFVDGLWS 337
I+ ++++D + R+ G + Q TL LL +DG +
Sbjct: 261 RIIREMFAYAKEHEPCIIFMDEVDA---IGGRRFSEGTSADREIQRTLMELLTQMDG-FD 316
Query: 338 SCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGG-FKILAFNYLKIKSHSMFD 396
+ G +II+ TN + LDPALLRPGR+D + + G +I + K+K FD
Sbjct: 317 NLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD 375
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 14/159 (8%)
Query: 220 IDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYD 271
+ +L +++ + ++G +G L+ GPPGTGK+ L A+A K D +
Sbjct: 24 VAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83
Query: 272 MEXXXXXXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331
M I+ I++ID GGG+DE TL+ +L
Sbjct: 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQ--TLNQMLVE 141
Query: 332 VDGLWSSCGDERIIVF-TTNYKERLDPALLRPGRMDMHI 369
+DG G+E IIV TN + LDPALLRPGR D +
Sbjct: 142 MDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQV 177
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 28/159 (17%)
Query: 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANY--LKFDIYDMEXXXXXXXXXXX 284
VK E + +G A +G +LYGPPGTGK+ L A+A++ KF
Sbjct: 168 VKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF--------IRVSGAELV 219
Query: 285 XXXVSTGNR--------------SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330
+ G+R SI+ +++ID GGG E Q T+ LLN
Sbjct: 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSE--VQRTMLELLN 277
Query: 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHI 369
+DG +S + I+ TN + LDPALLRPGR+D I
Sbjct: 278 QLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKI 314
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 69/152 (45%), Gaps = 12/152 (7%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSL---IAAMANYLKF-----DIYDMEXXXX 277
F+K ++R+G +G LL GPPGTG + L +A AN F D ++
Sbjct: 34 FLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVG 93
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG+DE TL+ LL +DG S
Sbjct: 94 AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQ--TLNQLLVEMDGFDS 151
Query: 338 SCGDERIIVFTTNYKERLDPALLRPGRMDMHI 369
G I++ TN + LDPALLRPGR D I
Sbjct: 152 KEGI--IVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 231 EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEXX--------XXXXXXX 282
+ Y ++G RG LLYGPPGTGK+ L+ A+AN K +
Sbjct: 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVR 255
Query: 283 XXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDE 342
SI+ I+++D SI + G D ++ + LL +DG S +
Sbjct: 256 DVFRLARENAPSIIFIDEVD-SIATKRFDAQTGSDREVQRILIE-LLTQMDGFDQSTNVK 313
Query: 343 RIIVFTTNYKERLDPALLRPGRMDMHIHMSYL 374
++ TN + LDPALLRPGR+D I L
Sbjct: 314 --VIMATNRADTLDPALLRPGRLDRKIEFPSL 343
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXX 277
F+K + +G +G LL GPPG GK+ L A+A + D +M
Sbjct: 49 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 108
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG DE TL+ LL +DG
Sbjct: 109 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ--TLNQLLVEMDGFEK 166
Query: 338 SCGDERIIVF-TTNYKERLDPALLRPGRMDMHI 369
D I+V TN + LDPALLRPGR D I
Sbjct: 167 ---DTAIVVMAATNRPDILDPALLRPGRFDRQI 196
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 65/155 (41%), Gaps = 14/155 (9%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXX 277
F+K + +G +G LL GPPG GK+ L A+A + D +M
Sbjct: 34 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 93
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG DE TL+ LL +DG
Sbjct: 94 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ--TLNQLLVEMDGFEK 151
Query: 338 SCGDERIIVF-TTNYKERLDPALLRPGRMDMHIHM 371
D I+V TN + LDPALLRPGR D I +
Sbjct: 152 ---DTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXX 277
F+K + +G +G LL GPPG GK+ L A+A + D +M
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG DE TL+ LL +DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ--TLNQLLVEMDGFEK 175
Query: 338 SCGDERIIVF-TTNYKERLDPALLRPGRMDMHI 369
D I+V TN + LDPALLRPGR D I
Sbjct: 176 ---DTAIVVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXX 277
F+K + +G +G LL GPPG GK+ L A+A + D +M
Sbjct: 58 FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVG 117
Query: 278 XXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
I+ I++ID GGG DE TL+ LL +DG
Sbjct: 118 AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ--TLNQLLVEMDGFEK 175
Query: 338 SCGDERIIVF-TTNYKERLDPALLRPGRMDMHI 369
D I+V TN + LDPALLRPGR D I
Sbjct: 176 ---DTAIVVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMA---NYLKFDIYDMEXXXX-----X 278
+K E + +VG +G LLYGPPGTGK+ L A+A N + E
Sbjct: 37 LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96
Query: 279 XXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338
SI+ I++ID GG + Q TL LL +DG + +
Sbjct: 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG--DREVQRTLMQLLAEMDG-FDA 153
Query: 339 CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394
GD +II TN + LDPA+LRPGR D I + G LKI + M
Sbjct: 154 RGDVKII-GATNRPDILDPAILRPGRFDRIIEVPAPDEKG----RLEILKIHTRKM 204
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 231 EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLKF---DIYDMEXXXXXXXXX 282
E Y +G +G +LYG PGTGK+ L A+AN +L+ ++
Sbjct: 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCR 265
Query: 283 XXXXXVSTGNRSILVIEDIDC-SIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341
SI+ I++ID + + GG E Q T+ LLN +DG + GD
Sbjct: 266 QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG---EREIQRTMLELLNQLDG-FDDRGD 321
Query: 342 ERIIVFTTNYKERLDPALLRPGRMDMHI 369
++I+ TN E LDPAL+RPGR+D I
Sbjct: 322 VKVIM-ATNKIETLDPALIRPGRIDRKI 348
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 226 FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM------EXXXXXX 279
++K E + ++G +G LL GPPG GK+ L A+A + M E
Sbjct: 24 YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83
Query: 280 XXXXXXXXVSTGNRS--ILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
R+ I+ I++ID ++ + G+ + TL+ LL +DG+ +
Sbjct: 84 AARVRSLFKEARARAPCIVYIDEID-AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142
Query: 338 SCGDERIIVFTTNYKERLDPALLRPGRMDMHI 369
+ D I++ +TN + LD AL+RPGR+D H+
Sbjct: 143 T--DHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 231 EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMAN--------YLKFDIYDMEXXXXXXXXX 282
E ++ +G +G LLYGPPGTGK+ A+AN + ++
Sbjct: 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVR 292
Query: 283 XXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDE 342
T I+ ++ID GG +N Q T+ L+ +DG + G+
Sbjct: 293 ELFEMARTKKACIIFFDEIDAVGGARFDDGAGG--DNEVQRTMLELITQLDG-FDPRGNI 349
Query: 343 RIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394
+++ F TN LDPALLRPGR+D + S G N +I S SM
Sbjct: 350 KVM-FATNRPNTLDPALLRPGRIDRKVEFSLPDLEG----RANIFRIHSKSM 396
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAM-----ANYLKF---DIYDMEXXXXX 278
+KR + + +G +G L+YGPPGTGK+ L A A +LK + M
Sbjct: 201 MKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260
Query: 279 XXXXXXXXXVSTGNRSILVIEDIDC--SIELENRQCGGGYDENNSQVTLSGLLNFVDGLW 336
+I+ I+++D + ++ + G + Q T+ LLN +DG
Sbjct: 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG----DREVQRTMLELLNQLDGFS 316
Query: 337 SSCGDERIIVF-TTNYKERLDPALLRPGRMDMHIH 370
S D+R+ V TN + LDPALLR GR+D I
Sbjct: 317 S---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSL---IAAMA 262
FD +A + KQAL + + R E ++ + +A RG LL+GPPG GK+ L +AA +
Sbjct: 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGL-RAPARGLLLFGPPGNGKTMLAKAVAAES 172
Query: 263 NYLKFDI--------YDMEXXXXXXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGG 314
N F+I Y E + SI+ I+ +D S+ E R+
Sbjct: 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQP---SIIFIDQVD-SLLCERRE--- 225
Query: 315 GYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF-TTNYKERLDPALLR 361
G + + ++ L+ F DG+ S GD+R++V TN + LD A+LR
Sbjct: 226 GEHDASRRLKTEFLIEF-DGVQ-SAGDDRVLVMGATNRPQELDEAVLR 271
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANY--LKF------DIYDMEXXXXX 278
V+ + + +G G LL GPPG GK+ L A+AN L F ++ +M
Sbjct: 30 VRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89
Query: 279 XXXXXXXXXVSTGNRSILVIEDIDC-SIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337
++ +++D +R+ G S ++ LL +DGL +
Sbjct: 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGA------SVRVVNQLLTEMDGLEA 143
Query: 338 SCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPG 377
+ I+ TN + +DPA+LRPGR+D + + P
Sbjct: 144 R--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIG--IPDATGRLEILQIHTKNMKLADDVD 395
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 215 LKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------- 267
L Q ++ D+F+K G +G L YGPPG GK+ L A+AN +
Sbjct: 492 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544
Query: 268 -DIYDMEXXXXXXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLS 326
++ M +L +++D SI + R G + ++
Sbjct: 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELD-SI-AKARGGNIGDGGGAADRVIN 602
Query: 327 GLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHM 371
+L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 603 QILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIG--IPDATGRLEILQIHTKNMKLADDVD 395
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 215 LKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------- 267
L Q ++ D+F+K G +G L YGPPG GK+ L A+AN +
Sbjct: 492 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544
Query: 268 -DIYDMEXXXXXXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLS 326
++ M +L +++D SI + R G + ++
Sbjct: 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELD-SI-AKARGGNIGDGGGAADRVIN 602
Query: 327 GLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHM 371
+L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 603 QILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGI--PDATGRLEILQIHTKNMKLADDVD 395
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGI--PDATGRLEILQIHTKNMKLADDVD 395
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGI--PDATGRLEILQIHTKNMKLADDVD 395
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Query: 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMEXXXXXXXXXX 283
+ +G RG LLYGPPGTGK+ + A+AN +I
Sbjct: 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK 288
Query: 284 XXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343
+I+ I+++D +I + + G + +S LL +DGL
Sbjct: 289 AFEEAEKNAPAIIFIDELD-AIAPKREKTHGEVERR----IVSQLLTLMDGLKQRA--HV 341
Query: 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399
I++ TN +DPAL R GR D + + P L + K+ + D+++
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGI--PDATGRLEILQIHTKNMKLADDVD 395
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 215 LKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------- 267
L Q ++ D+F+K G +G L YGPPG GK+ L A+AN +
Sbjct: 30 LVQYPVEHPDKFLK-------FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82
Query: 268 -DIYDMEXXXXXXXXXXXXXXVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLS 326
++ M +L +++D SI + R G + ++
Sbjct: 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELD-SI-AKARGGNIGDGGGAADRVIN 140
Query: 327 GLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHM 371
+L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 141 QILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 216 KQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMA 262
K+AL + + +K ++ W RG LL+GPPGTGKS L A+A
Sbjct: 21 KEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVA 66
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 216 KQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMA 262
K+AL + + +K ++ W RG LL+GPPGTGKS L A+A
Sbjct: 143 KEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGKSYLAKAVA 188
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 242 RGYLLYGPPGTGKS---SLIAAMANYLKFDIYDMEXXXX-----XXXXXXXXXXVSTGNR 293
+G LL+GPPGTGK+ IA+ + F I
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQP 177
Query: 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353
+++ I++ID + Q G G E++ ++ L+ DG +S D ++V TN +
Sbjct: 178 AVIFIDEIDSLLS----QRGDGEHESSRRIKTEFLVQL-DGATTSSEDRILVVGATNRPQ 232
Query: 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF-DEIEELIKE 404
+D A R R+ +++ K + N + + + +EIE+++++
Sbjct: 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ 282
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 243 GYLLYGPPGTGKSSLIAAMA 262
G LLYGPPGTGKS L A+A
Sbjct: 53 GILLYGPPGTGKSYLAKAVA 72
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 243 GYLLYGPPGTGKSSLIAAMA 262
G LLYGPPGTGKS L A+A
Sbjct: 86 GILLYGPPGTGKSYLAKAVA 105
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 243 GYLLYGPPGTGKSSLIAAMA 262
G LLYGPPGTGKS L A+A
Sbjct: 71 GILLYGPPGTGKSYLAKAVA 90
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 243 GYLLYGPPGTGKSSLIAAMA 262
G LLYGPPGTGKS L A+A
Sbjct: 62 GILLYGPPGTGKSYLAKAVA 81
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 213 PVLKQALIDDLDRFVKRREFYSRVGKAWKRG----YLLYGPPGTGKSSLIAAMA 262
P +++ + LD + E + V K G L YGPPGTGK+S I A+A
Sbjct: 14 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 209 LAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMAN----- 263
+A V KQAL + + R E ++ + +A +G LL+GPPG GK+ L A+A
Sbjct: 23 IAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSAT 81
Query: 264 YLKFDIYDMEXXXXXXXXXXXXXXVSTGNR---SILVIEDIDCSIELENRQCGGGYDENN 320
+L + + SI+ I+++D + + E +
Sbjct: 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS----EHEAS 137
Query: 321 SQVTLSGLLNFVDGLWSSC-GDERIIVFTTNYKERLDPALLRPGRMDMHIHMS 372
++ L+ F DGL + GD +++ TN + LD A LR R +++S
Sbjct: 138 RRLKTEFLVEF-DGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVS 187
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265
K R LL GPPGTGK++L A+A L
Sbjct: 74 KXAGRAVLLAGPPGTGKTALALAIAQEL 101
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 231 EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265
E + RV + L+ GP G+GKS+ +AAM +YL
Sbjct: 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 245 LLYGPPGTGKSSLIAAMANYLKFDI 269
+L+GPPGTGK++L +A Y D+
Sbjct: 54 ILWGPPGTGKTTLAEVIARYANADV 78
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265
K R LL GPPGTGK++L A+A L
Sbjct: 60 KMAGRAVLLAGPPGTGKTALALAIAQEL 87
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG----YLLYGPPGTGKSSLIAAMAN 263
+LA P +++ +LD + + + K K L YGPPGTGK+S I A+
Sbjct: 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80
Query: 264 YL 265
L
Sbjct: 81 EL 82
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 235 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD 268
R GK R L+ G PGTGK+++ MA L D
Sbjct: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271
R +LYGPPG GK++ +A L +DI +
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILE 107
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 231 EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265
+F + A ++G LYG G GKS L+AAMA+ L
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271
A KR L GP G GKS++ +A L + YD
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 241 KRGYLLYGPPGTGKSSLIAAMANYL 265
KR LL G PGTGKS L AMA L
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 219 LIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLI-AAMANYLKFDI 269
+I +D + FY + KRG +L GPPG+GK+ ++ A+ N +D+
Sbjct: 1028 VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDV 1077
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 219 LIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLI-AAMANYLKFDI 269
+I +D + FY + KRG +L GPPG+GK+ ++ A+ N +D+
Sbjct: 1247 VIPTIDTIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSSLYDV 1296
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 199 NLDHPSTFDTLAM-----DPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTG 253
L P T +T A+ +P+ + + LD V+ VG+ + G L+ G G
Sbjct: 112 GLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG--LFAGSGVG 169
Query: 254 KSSLIAAMANYLKFDI 269
KS L+ MA Y + D+
Sbjct: 170 KSVLLGMMARYTRADV 185
>pdb|4EQ6|B Chain B, The Crystal Structure Of Psy3-Csm2 Complex From Budding
Yeast
Length = 256
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 289 STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341
+TG+ IL+I+ + + + RQ G Y + S + ++GL+ F++ L+ S D
Sbjct: 78 TTGDEKILIIDIVSIWSQQKQRQHGAIYMNSLSCINITGLIVFLELLYDSPMD 130
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 224 DRFVKRREFYSRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDI 269
+R ++ Y KA K LL+GPPG GK++L +A+ L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|4DT1|B Chain B, Crystal Structure Of The Psy3-Csm2 Complex
Length = 245
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 289 STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341
+TG+ IL+I+ + + + RQ G Y + S + ++GL+ F++ L+ S D
Sbjct: 67 TTGDEKILIIDIVSIWSQQKQRQHGAIYMNSLSCINITGLIVFLELLYDSPMD 119
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 224 DRFVKRREFYSRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDI 269
+R ++ Y KA K LL+GPPG GK++L +A+ L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 224 DRFVKRREFYSRVGKAWKRGY---LLYGPPGTGKSSLIAAMANYLKFDI 269
+R ++ Y KA K LL+GPPG GK++L +A+ L ++
Sbjct: 18 ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 245 LLYGPPGTGKSSLIAAMANYLKFD 268
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 245 LLYGPPGTGKSSLIAAMANYLKFD 268
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 245 LLYGPPGTGKSSLIAAMANYLKFD 268
L+ GP G+GKS+LI + +LK D
Sbjct: 37 LIIGPNGSGKSTLINVITGFLKAD 60
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 181 KETKKVIKLYS-------LCAADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFY 233
KE + V KLY+ C A+AI L + + VL Q ++ R +
Sbjct: 12 KEQRFVDKLYTGLIQGQRACLAEAITLVESTHSRKKELAQVLLQKVL-----LYHREQEQ 66
Query: 234 SRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265
S GK L GPPG GKS+ I L
Sbjct: 67 SNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 177 SKAIKETKKVIKLYSLCAADAIN------LDHPSTFDTLAMDPVLKQALIDDLDRFVKRR 230
S I++ K+ K +++ +AIN ++ FD L D ++ +++ + R
Sbjct: 105 SGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPDYPRERFILETDPKIYSTR 164
Query: 231 --EFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMAN 263
+ ++ +GK +RG ++ PP GK++++ +AN
Sbjct: 165 LIDLFAPIGKG-QRG-MIVAPPKAGKTTILKEIAN 197
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 15/57 (26%)
Query: 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLI 258
HP TF +D K+A++ L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 15/57 (26%)
Query: 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLI 258
HP TF +D K+A++ L + K +++GPPGTGK++ +
Sbjct: 181 HPLTFFNTCLDTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTV 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,263,123
Number of Sequences: 62578
Number of extensions: 491692
Number of successful extensions: 1525
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1438
Number of HSP's gapped (non-prelim): 84
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)