Query 047029
Match_columns 455
No_of_seqs 434 out of 3099
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1.5E-97 3E-102 747.1 37.9 421 13-439 2-440 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-41 2.4E-46 333.3 16.0 199 201-403 145-354 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 3E-36 6.5E-41 314.0 17.4 229 202-439 429-680 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 9.9E-35 2.1E-39 298.8 17.1 243 201-450 505-786 (802)
5 KOG0727 26S proteasome regulat 100.0 7.2E-35 1.6E-39 273.0 14.2 222 201-426 149-396 (408)
6 KOG0734 AAA+-type ATPase conta 100.0 8.3E-35 1.8E-39 295.4 14.3 179 204-390 301-487 (752)
7 KOG0731 AAA+-type ATPase conta 100.0 9.4E-34 2E-38 303.1 16.7 227 201-431 305-558 (774)
8 KOG0726 26S proteasome regulat 100.0 6E-34 1.3E-38 271.4 9.5 222 201-426 179-426 (440)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.6E-33 1E-37 286.6 16.6 198 198-401 180-391 (802)
10 KOG0736 Peroxisome assembly fa 100.0 6.8E-33 1.5E-37 291.4 17.5 197 203-403 668-876 (953)
11 KOG0728 26S proteasome regulat 100.0 6.3E-33 1.4E-37 259.8 13.6 183 202-388 142-332 (404)
12 PTZ00454 26S protease regulato 100.0 2.1E-31 4.6E-36 274.0 18.0 186 201-390 139-332 (398)
13 KOG0652 26S proteasome regulat 100.0 2.3E-31 5E-36 250.5 15.2 229 201-433 165-412 (424)
14 KOG0729 26S proteasome regulat 100.0 1.4E-31 3.1E-36 252.6 13.0 230 198-431 168-423 (435)
15 COG0465 HflB ATP-dependent Zn 100.0 2.9E-31 6.2E-36 279.8 13.9 229 202-435 145-399 (596)
16 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-30 2.3E-35 257.7 14.8 243 204-453 209-489 (491)
17 TIGR03689 pup_AAA proteasome A 100.0 4.4E-30 9.5E-35 269.6 15.8 183 201-389 176-380 (512)
18 PRK03992 proteasome-activating 100.0 2.1E-29 4.6E-34 259.6 19.6 232 201-438 125-377 (389)
19 TIGR01243 CDC48 AAA family ATP 100.0 4.6E-29 1E-33 276.4 20.5 244 203-452 449-729 (733)
20 PTZ00361 26 proteosome regulat 100.0 2.6E-29 5.5E-34 260.4 17.1 187 200-390 176-370 (438)
21 TIGR01241 FtsH_fam ATP-depende 100.0 5.4E-29 1.2E-33 264.6 19.0 186 201-391 49-242 (495)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 1.9E-28 4.2E-33 257.3 20.7 227 202-439 223-469 (489)
23 CHL00176 ftsH cell division pr 100.0 2.5E-28 5.5E-33 263.8 16.7 185 201-390 177-369 (638)
24 COG0464 SpoVK ATPases of the A 100.0 5.2E-28 1.1E-32 257.2 18.8 185 201-392 236-428 (494)
25 KOG0735 AAA+-type ATPase [Post 100.0 8E-28 1.7E-32 251.3 18.4 188 194-388 652-849 (952)
26 COG1223 Predicted ATPase (AAA+ 100.0 5.3E-28 1.1E-32 227.8 13.5 189 202-402 116-312 (368)
27 PLN00020 ribulose bisphosphate 100.0 2.9E-27 6.2E-32 235.5 18.3 171 232-409 139-332 (413)
28 KOG0651 26S proteasome regulat 99.9 8.3E-28 1.8E-32 231.5 11.0 197 204-404 129-336 (388)
29 TIGR01242 26Sp45 26S proteasom 99.9 5.3E-27 1.1E-31 240.2 16.0 200 201-404 116-326 (364)
30 KOG0737 AAA+-type ATPase [Post 99.9 2.5E-27 5.5E-32 233.7 12.9 206 204-416 89-318 (386)
31 PF14363 AAA_assoc: Domain ass 99.9 4.9E-27 1.1E-31 195.6 11.3 97 35-131 1-98 (98)
32 KOG0739 AAA+-type ATPase [Post 99.9 5.7E-27 1.2E-31 224.4 11.3 189 204-401 130-327 (439)
33 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.7E-26 3.7E-31 262.7 14.3 193 229-432 1618-1883(2281)
34 PRK10733 hflB ATP-dependent me 99.9 8E-26 1.7E-30 246.4 16.4 183 203-390 148-338 (644)
35 KOG0732 AAA+-type ATPase conta 99.9 1.4E-24 3.1E-29 238.3 15.3 206 198-410 256-490 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 5.2E-24 1.1E-28 236.2 18.2 181 202-389 173-361 (733)
37 KOG0740 AAA+-type ATPase [Post 99.9 2.9E-24 6.4E-29 218.6 12.7 186 201-394 147-340 (428)
38 KOG0741 AAA+-type ATPase [Post 99.9 5.3E-24 1.1E-28 216.8 11.8 182 201-388 213-415 (744)
39 KOG0730 AAA+-type ATPase [Post 99.9 4.7E-23 1E-27 215.6 16.4 182 202-393 180-370 (693)
40 PF00004 AAA: ATPase family as 99.8 7.3E-20 1.6E-24 158.9 11.0 123 244-373 1-132 (132)
41 PF05496 RuvB_N: Holliday junc 99.8 1.2E-18 2.6E-23 163.8 19.2 175 201-401 18-206 (233)
42 KOG0744 AAA+-type ATPase [Post 99.8 4.9E-19 1.1E-23 171.9 11.2 179 205-388 140-341 (423)
43 KOG0742 AAA+-type ATPase [Post 99.8 6.7E-19 1.5E-23 175.2 11.6 216 159-389 298-530 (630)
44 PF05673 DUF815: Protein of un 99.8 9.1E-18 2E-22 159.8 15.4 185 193-401 13-222 (249)
45 TIGR02881 spore_V_K stage V sp 99.8 2E-17 4.2E-22 162.0 16.8 181 206-402 5-206 (261)
46 PRK00080 ruvB Holliday junctio 99.8 2.3E-17 5E-22 166.8 16.8 170 202-397 20-203 (328)
47 CHL00181 cbbX CbbX; Provisiona 99.7 4.5E-17 9.7E-22 161.5 16.3 176 207-397 23-219 (287)
48 TIGR00635 ruvB Holliday juncti 99.7 4.5E-17 9.8E-22 162.6 16.1 168 204-397 1-182 (305)
49 TIGR02880 cbbX_cfxQ probable R 99.7 6.4E-17 1.4E-21 160.3 15.6 176 208-398 23-219 (284)
50 COG2255 RuvB Holliday junction 99.7 2.7E-16 5.8E-21 151.0 15.2 184 201-410 20-218 (332)
51 PRK04195 replication factor C 99.7 6.3E-16 1.4E-20 164.0 18.0 167 201-397 8-183 (482)
52 PRK07003 DNA polymerase III su 99.7 9.8E-16 2.1E-20 165.3 19.2 160 202-396 11-200 (830)
53 COG2256 MGS1 ATPase related to 99.7 4.6E-16 1E-20 155.7 15.1 152 202-389 19-178 (436)
54 PRK14962 DNA polymerase III su 99.7 1.4E-15 3.1E-20 160.0 19.6 161 201-396 8-198 (472)
55 TIGR00763 lon ATP-dependent pr 99.7 6.6E-16 1.4E-20 172.4 17.6 158 208-387 321-505 (775)
56 PRK14956 DNA polymerase III su 99.7 1.1E-15 2.3E-20 159.4 17.9 163 201-398 12-204 (484)
57 PRK12323 DNA polymerase III su 99.7 1.1E-15 2.5E-20 162.9 15.9 162 201-397 10-206 (700)
58 PRK14960 DNA polymerase III su 99.7 2.2E-15 4.8E-20 161.1 17.8 160 201-395 9-198 (702)
59 PRK14961 DNA polymerase III su 99.6 6E-15 1.3E-19 151.2 19.2 162 202-398 11-202 (363)
60 PRK06645 DNA polymerase III su 99.6 1.3E-14 2.9E-19 153.5 20.3 161 201-396 15-209 (507)
61 PLN03025 replication factor C 99.6 8.6E-15 1.9E-19 147.5 16.7 160 201-396 7-180 (319)
62 COG2607 Predicted ATPase (AAA+ 99.6 1E-14 2.2E-19 137.1 15.7 177 194-394 47-246 (287)
63 PRK14964 DNA polymerase III su 99.6 1.3E-14 2.9E-19 152.5 18.1 161 202-397 8-198 (491)
64 PRK14958 DNA polymerase III su 99.6 9.8E-15 2.1E-19 155.2 17.1 158 202-394 11-198 (509)
65 PRK07994 DNA polymerase III su 99.6 1.7E-14 3.8E-19 155.8 18.8 159 202-395 11-199 (647)
66 TIGR02639 ClpA ATP-dependent C 99.6 3.1E-15 6.6E-20 166.1 13.0 159 202-389 177-360 (731)
67 PRK06893 DNA replication initi 99.6 2.2E-14 4.7E-19 137.9 17.1 176 198-402 7-189 (229)
68 PRK14949 DNA polymerase III su 99.6 2.1E-14 4.6E-19 157.7 19.0 159 202-395 11-199 (944)
69 COG0466 Lon ATP-dependent Lon 99.6 1.8E-14 3.8E-19 153.0 17.5 159 208-388 324-509 (782)
70 PRK08691 DNA polymerase III su 99.6 1.7E-14 3.7E-19 155.5 17.1 160 202-396 11-200 (709)
71 PRK05563 DNA polymerase III su 99.6 3.8E-14 8.2E-19 152.5 19.7 161 202-397 11-201 (559)
72 PHA02544 44 clamp loader, smal 99.6 1.3E-14 2.7E-19 145.7 14.6 152 201-387 15-173 (316)
73 PRK14963 DNA polymerase III su 99.6 5.3E-14 1.1E-18 149.3 19.7 160 201-395 8-196 (504)
74 PRK13342 recombination factor 99.6 2.8E-14 6E-19 148.7 17.3 150 201-389 6-166 (413)
75 PRK14951 DNA polymerase III su 99.6 3.6E-14 7.8E-19 153.0 18.5 161 202-397 11-206 (618)
76 PRK14952 DNA polymerase III su 99.6 4.9E-14 1.1E-18 151.4 18.9 163 201-398 7-201 (584)
77 TIGR02397 dnaX_nterm DNA polym 99.6 5.5E-14 1.2E-18 143.1 18.3 163 201-398 8-200 (355)
78 PRK07764 DNA polymerase III su 99.6 4.8E-14 1E-18 156.7 19.0 160 201-395 9-200 (824)
79 PRK14957 DNA polymerase III su 99.6 7.1E-14 1.5E-18 148.9 19.2 160 202-396 11-200 (546)
80 PRK14970 DNA polymerase III su 99.6 1.2E-13 2.5E-18 141.8 19.7 161 201-396 11-189 (367)
81 PRK14969 DNA polymerase III su 99.6 3.9E-14 8.5E-19 151.4 16.7 159 202-395 11-199 (527)
82 PRK05896 DNA polymerase III su 99.6 6.2E-14 1.3E-18 149.7 17.2 160 201-395 10-199 (605)
83 PRK14959 DNA polymerase III su 99.6 7.5E-14 1.6E-18 149.8 17.7 164 201-399 10-203 (624)
84 TIGR03345 VI_ClpV1 type VI sec 99.6 2.5E-14 5.4E-19 160.5 14.5 157 202-388 182-364 (852)
85 PRK07133 DNA polymerase III su 99.6 1E-13 2.2E-18 150.8 18.7 159 201-394 12-197 (725)
86 KOG0989 Replication factor C, 99.6 2.5E-14 5.5E-19 138.8 12.5 161 200-396 29-210 (346)
87 TIGR02640 gas_vesic_GvpN gas v 99.6 5E-14 1.1E-18 138.1 14.9 158 215-403 6-213 (262)
88 PRK14965 DNA polymerase III su 99.6 7.1E-14 1.5E-18 151.0 16.9 160 202-396 11-200 (576)
89 KOG2004 Mitochondrial ATP-depe 99.6 1.1E-13 2.4E-18 146.4 17.7 159 208-388 412-597 (906)
90 PRK07940 DNA polymerase III su 99.6 1.5E-13 3.3E-18 141.7 18.5 156 204-385 2-187 (394)
91 PRK10865 protein disaggregatio 99.5 3.6E-14 7.7E-19 159.6 14.2 156 203-388 174-355 (857)
92 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.4E-13 3E-18 131.2 15.6 173 198-402 6-187 (226)
93 PRK14953 DNA polymerase III su 99.5 2.2E-13 4.9E-18 144.1 18.5 162 201-397 10-201 (486)
94 PRK08727 hypothetical protein; 99.5 2.7E-13 5.8E-18 130.7 17.5 172 198-402 10-190 (233)
95 PRK08451 DNA polymerase III su 99.5 3.3E-13 7.2E-18 143.2 19.6 160 201-395 8-197 (535)
96 PRK06305 DNA polymerase III su 99.5 3E-13 6.6E-18 142.1 18.8 160 201-395 11-201 (451)
97 PRK08084 DNA replication initi 99.5 2.4E-13 5.2E-18 131.2 16.5 175 198-402 13-195 (235)
98 PRK00149 dnaA chromosomal repl 99.5 2E-13 4.3E-18 143.9 16.7 181 198-404 113-310 (450)
99 PRK14955 DNA polymerase III su 99.5 1.9E-13 4.1E-18 141.7 15.9 160 201-395 10-207 (397)
100 KOG0735 AAA+-type ATPase [Post 99.5 1.1E-13 2.3E-18 146.2 14.0 170 207-390 408-589 (952)
101 PRK12402 replication factor C 99.5 4.8E-13 1E-17 135.1 18.4 159 201-395 9-205 (337)
102 TIGR00362 DnaA chromosomal rep 99.5 2.7E-13 5.9E-18 141.0 16.9 178 199-403 102-297 (405)
103 PRK06647 DNA polymerase III su 99.5 4.1E-13 8.9E-18 144.2 18.5 164 202-400 11-204 (563)
104 PRK14954 DNA polymerase III su 99.5 5E-13 1.1E-17 144.6 19.0 160 202-396 11-208 (620)
105 PRK09111 DNA polymerase III su 99.5 5.4E-13 1.2E-17 144.0 19.1 161 201-396 18-213 (598)
106 PRK11034 clpA ATP-dependent Cl 99.5 5.4E-14 1.2E-18 155.3 11.2 154 206-388 185-363 (758)
107 PRK10787 DNA-binding ATP-depen 99.5 2.6E-13 5.6E-18 150.9 16.4 158 208-388 323-507 (784)
108 PRK14948 DNA polymerase III su 99.5 8.6E-13 1.9E-17 143.3 19.4 159 201-394 10-200 (620)
109 PRK08903 DnaA regulatory inact 99.5 1E-12 2.2E-17 125.8 17.7 169 198-402 9-185 (227)
110 TIGR03346 chaperone_ClpB ATP-d 99.5 1.8E-13 3.9E-18 154.3 13.9 199 202-434 168-397 (852)
111 PRK13341 recombination factor 99.5 4.9E-13 1.1E-17 147.1 16.6 151 202-388 23-182 (725)
112 PRK14950 DNA polymerase III su 99.5 1.1E-12 2.5E-17 142.2 18.4 162 201-397 10-202 (585)
113 PRK14086 dnaA chromosomal repl 99.5 7.4E-13 1.6E-17 141.6 16.4 179 199-404 280-476 (617)
114 TIGR02902 spore_lonB ATP-depen 99.5 4.9E-13 1.1E-17 143.3 15.0 171 201-403 59-292 (531)
115 TIGR02928 orc1/cdc6 family rep 99.5 2.7E-12 5.9E-17 131.3 19.8 160 204-388 12-213 (365)
116 PRK14088 dnaA chromosomal repl 99.5 6.3E-13 1.4E-17 139.4 15.2 178 199-404 97-293 (440)
117 PRK05342 clpX ATP-dependent pr 99.5 1.2E-12 2.6E-17 135.6 15.9 176 206-385 69-323 (412)
118 PRK14971 DNA polymerase III su 99.5 2.7E-12 5.9E-17 139.3 19.1 161 201-396 11-202 (614)
119 PRK00440 rfc replication facto 99.4 3.9E-12 8.5E-17 127.3 18.7 160 200-395 10-182 (319)
120 CHL00095 clpC Clp protease ATP 99.4 3.9E-13 8.4E-18 151.1 12.6 152 205-387 177-354 (821)
121 PRK12422 chromosomal replicati 99.4 2.5E-12 5.3E-17 134.9 17.4 181 199-402 103-299 (445)
122 PRK05642 DNA replication initi 99.4 3.5E-12 7.7E-17 123.0 17.1 174 198-400 10-192 (234)
123 KOG2028 ATPase related to the 99.4 1.2E-12 2.6E-17 129.5 13.6 150 202-387 133-294 (554)
124 PF00308 Bac_DnaA: Bacterial d 99.4 2.1E-12 4.6E-17 123.3 13.2 178 201-404 2-196 (219)
125 TIGR01650 PD_CobS cobaltochela 99.4 3.6E-12 7.9E-17 127.2 14.9 132 241-387 64-233 (327)
126 PRK11034 clpA ATP-dependent Cl 99.4 2.9E-12 6.2E-17 141.7 15.1 159 208-388 459-667 (758)
127 PRK00411 cdc6 cell division co 99.4 1.8E-11 4E-16 126.5 20.2 159 205-389 28-222 (394)
128 cd00009 AAA The AAA+ (ATPases 99.4 3.9E-12 8.4E-17 110.6 12.7 115 241-373 19-151 (151)
129 TIGR00382 clpX endopeptidase C 99.4 3.9E-12 8.5E-17 131.4 14.7 174 208-385 78-329 (413)
130 COG0714 MoxR-like ATPases [Gen 99.4 1.1E-11 2.3E-16 125.6 17.1 130 241-388 43-204 (329)
131 KOG0736 Peroxisome assembly fa 99.4 6.3E-12 1.4E-16 134.1 15.7 143 239-390 429-579 (953)
132 PRK06620 hypothetical protein; 99.4 1.8E-11 3.9E-16 116.5 17.1 165 198-403 7-176 (214)
133 COG2812 DnaX DNA polymerase II 99.4 5.4E-12 1.2E-16 132.7 14.5 166 202-402 11-206 (515)
134 PTZ00112 origin recognition co 99.4 1.4E-11 3E-16 134.2 17.6 193 207-432 755-988 (1164)
135 PHA02244 ATPase-like protein 99.4 9.8E-12 2.1E-16 125.6 14.5 119 241-379 119-266 (383)
136 PRK13407 bchI magnesium chelat 99.3 4.3E-12 9.3E-17 128.0 11.3 156 202-388 3-217 (334)
137 PF07728 AAA_5: AAA domain (dy 99.3 1.8E-12 3.8E-17 114.4 7.1 105 243-365 1-139 (139)
138 TIGR02903 spore_lon_C ATP-depe 99.3 1.9E-11 4E-16 133.2 16.5 174 201-406 148-385 (615)
139 PRK07471 DNA polymerase III su 99.3 4E-11 8.6E-16 122.8 17.3 153 200-387 12-213 (365)
140 PRK14087 dnaA chromosomal repl 99.3 1.6E-11 3.4E-16 129.1 14.6 175 203-404 111-307 (450)
141 TIGR02639 ClpA ATP-dependent C 99.3 1.4E-11 3E-16 137.1 14.8 155 208-389 455-664 (731)
142 PRK05564 DNA polymerase III su 99.3 1.4E-10 3E-15 116.6 20.5 148 205-387 2-165 (313)
143 PRK08181 transposase; Validate 99.3 1.9E-11 4.2E-16 119.9 12.5 152 167-352 43-209 (269)
144 PRK09112 DNA polymerase III su 99.3 2.4E-10 5.1E-15 116.5 20.6 151 201-386 17-212 (351)
145 PRK07952 DNA replication prote 99.3 6E-12 1.3E-16 121.8 8.3 151 178-352 42-205 (244)
146 PRK09087 hypothetical protein; 99.3 1.2E-10 2.6E-15 111.8 15.6 164 198-402 12-181 (226)
147 KOG1969 DNA replication checkp 99.3 1.6E-10 3.5E-15 123.0 17.8 172 201-390 265-484 (877)
148 CHL00081 chlI Mg-protoporyphyr 99.3 4.7E-11 1E-15 120.9 13.3 155 203-388 13-233 (350)
149 TIGR02030 BchI-ChlI magnesium 99.2 4.9E-11 1.1E-15 120.6 12.0 153 205-388 2-220 (337)
150 PRK05201 hslU ATP-dependent pr 99.2 8.7E-11 1.9E-15 120.5 13.6 69 208-276 16-85 (443)
151 PRK08116 hypothetical protein; 99.2 7.4E-11 1.6E-15 116.0 12.6 149 204-376 82-251 (268)
152 TIGR00390 hslU ATP-dependent p 99.2 1.2E-10 2.6E-15 119.3 14.2 69 208-276 13-82 (441)
153 TIGR00678 holB DNA polymerase 99.2 1.9E-10 4.1E-15 106.9 14.2 124 240-386 13-167 (188)
154 PRK10865 protein disaggregatio 99.2 3.8E-10 8.3E-15 127.2 17.9 158 206-389 567-781 (857)
155 PRK11331 5-methylcytosine-spec 99.2 2.4E-10 5.3E-15 118.3 14.4 135 206-373 174-357 (459)
156 PRK06526 transposase; Provisio 99.2 3.9E-11 8.5E-16 117.0 8.1 153 166-352 35-201 (254)
157 COG0464 SpoVK ATPases of the A 99.2 8.1E-11 1.7E-15 125.6 11.2 153 227-388 4-164 (494)
158 PF07726 AAA_3: ATPase family 99.2 1.9E-11 4.2E-16 105.7 5.0 106 243-366 1-130 (131)
159 PRK08939 primosomal protein Dn 99.2 1.2E-10 2.6E-15 116.5 11.1 97 203-304 123-229 (306)
160 COG1474 CDC6 Cdc6-related prot 99.2 8.9E-10 1.9E-14 112.8 16.8 192 209-434 19-246 (366)
161 TIGR03345 VI_ClpV1 type VI sec 99.2 3.9E-10 8.4E-15 127.0 14.9 155 207-389 566-782 (852)
162 TIGR03346 chaperone_ClpB ATP-d 99.1 5.1E-10 1.1E-14 126.5 15.6 155 207-388 565-777 (852)
163 PRK12377 putative replication 99.1 3.4E-10 7.4E-15 109.8 12.0 134 204-361 71-220 (248)
164 PRK13531 regulatory ATPase Rav 99.1 3.6E-10 7.9E-15 118.0 12.6 128 241-386 39-193 (498)
165 PRK08058 DNA polymerase III su 99.1 1.6E-09 3.4E-14 109.7 16.9 146 205-385 3-180 (329)
166 smart00763 AAA_PrkA PrkA AAA d 99.1 1E-09 2.2E-14 110.9 15.3 63 205-274 48-118 (361)
167 CHL00095 clpC Clp protease ATP 99.1 5.5E-10 1.2E-14 125.8 14.8 155 207-388 509-733 (821)
168 PF07724 AAA_2: AAA domain (Cd 99.1 1.5E-10 3.3E-15 106.3 7.9 109 240-353 2-131 (171)
169 PRK07399 DNA polymerase III su 99.1 3.1E-09 6.7E-14 106.8 17.2 148 205-388 2-196 (314)
170 PRK05707 DNA polymerase III su 99.1 3.8E-09 8.3E-14 106.7 17.9 123 241-386 22-177 (328)
171 PF01078 Mg_chelatase: Magnesi 99.1 3.5E-10 7.5E-15 106.0 9.1 140 205-377 1-205 (206)
172 COG0542 clpA ATP-binding subun 99.1 1.3E-09 2.7E-14 119.2 14.5 157 207-389 491-707 (786)
173 smart00382 AAA ATPases associa 99.1 6E-10 1.3E-14 95.7 9.7 118 241-374 2-147 (148)
174 COG0593 DnaA ATPase involved i 99.1 2.3E-09 4.9E-14 110.1 15.3 180 198-404 78-274 (408)
175 TIGR02442 Cob-chelat-sub cobal 99.1 3.1E-10 6.8E-15 124.2 9.2 152 205-387 2-214 (633)
176 TIGR00602 rad24 checkpoint pro 99.1 2.1E-09 4.6E-14 116.6 14.9 165 200-390 77-290 (637)
177 COG0470 HolB ATPase involved i 99.1 2.2E-09 4.7E-14 107.6 13.8 116 241-379 24-173 (325)
178 smart00350 MCM minichromosome 99.0 8.8E-10 1.9E-14 117.9 11.3 161 208-389 204-402 (509)
179 COG0542 clpA ATP-binding subun 99.0 1.8E-09 3.9E-14 118.0 13.5 198 205-436 168-396 (786)
180 PF01695 IstB_IS21: IstB-like 99.0 3E-10 6.6E-15 105.0 5.6 94 241-352 47-150 (178)
181 PF13177 DNA_pol3_delta2: DNA 99.0 7.6E-09 1.6E-13 94.2 14.6 112 240-374 18-161 (162)
182 COG1484 DnaC DNA replication p 99.0 1E-09 2.2E-14 107.1 9.1 123 204-352 76-209 (254)
183 PRK06835 DNA replication prote 99.0 2.6E-09 5.7E-14 107.8 10.9 104 241-361 183-303 (329)
184 PF12775 AAA_7: P-loop contain 99.0 2.6E-09 5.7E-14 105.2 10.4 135 241-389 33-195 (272)
185 PRK04132 replication factor C 99.0 9.4E-09 2E-13 114.4 15.1 127 244-393 567-708 (846)
186 PRK11608 pspF phage shock prot 98.9 1.2E-08 2.6E-13 103.3 13.5 154 205-388 4-195 (326)
187 PRK06964 DNA polymerase III su 98.9 1.7E-08 3.6E-13 102.3 14.5 125 239-386 19-203 (342)
188 PF00158 Sigma54_activat: Sigm 98.9 5.9E-09 1.3E-13 95.5 10.1 116 209-351 1-143 (168)
189 TIGR01817 nifA Nif-specific re 98.9 1.4E-08 3E-13 109.5 14.5 157 203-389 192-386 (534)
190 PRK11388 DNA-binding transcrip 98.9 1.8E-08 3.8E-13 110.9 14.8 155 204-388 322-511 (638)
191 PRK09183 transposase/IS protei 98.9 3.6E-09 7.8E-14 103.6 8.0 154 167-352 40-206 (259)
192 TIGR02974 phageshock_pspF psp 98.9 1.2E-08 2.7E-13 103.2 11.8 149 210-388 2-188 (329)
193 PRK06921 hypothetical protein; 98.9 1.3E-08 2.8E-13 100.1 11.3 63 241-303 117-188 (266)
194 KOG0991 Replication factor C, 98.9 9.7E-09 2.1E-13 96.7 9.6 151 201-387 21-185 (333)
195 TIGR02031 BchD-ChlD magnesium 98.8 9.1E-09 2E-13 111.8 9.9 128 242-387 17-174 (589)
196 PF03215 Rad17: Rad17 cell cyc 98.8 7.8E-08 1.7E-12 102.6 16.1 165 200-390 12-229 (519)
197 PF06068 TIP49: TIP49 C-termin 98.8 8.4E-08 1.8E-12 96.6 15.2 59 343-404 308-378 (398)
198 PRK06871 DNA polymerase III su 98.8 1.4E-07 3E-12 95.0 15.7 123 241-386 24-178 (325)
199 COG1224 TIP49 DNA helicase TIP 98.8 3.1E-07 6.7E-12 91.5 17.5 58 343-403 321-390 (450)
200 COG1219 ClpX ATP-dependent pro 98.8 2.5E-08 5.5E-13 97.7 9.7 96 241-338 97-206 (408)
201 COG1239 ChlI Mg-chelatase subu 98.8 3.8E-08 8.3E-13 100.2 11.4 156 204-390 14-235 (423)
202 PRK15424 propionate catabolism 98.8 5.8E-08 1.3E-12 104.0 12.8 156 204-389 216-418 (538)
203 TIGR02329 propionate_PrpR prop 98.8 5.2E-08 1.1E-12 104.3 12.5 161 201-389 206-403 (526)
204 PRK08769 DNA polymerase III su 98.8 1.5E-07 3.2E-12 94.7 14.7 122 241-385 26-183 (319)
205 PRK06090 DNA polymerase III su 98.8 2.3E-07 4.9E-12 93.3 15.8 122 241-385 25-178 (319)
206 TIGR00368 Mg chelatase-related 98.7 3.3E-08 7.3E-13 105.0 9.4 142 204-378 189-395 (499)
207 PRK08699 DNA polymerase III su 98.7 7.5E-08 1.6E-12 97.3 11.5 122 240-384 20-182 (325)
208 PRK07993 DNA polymerase III su 98.7 8.3E-07 1.8E-11 90.0 19.0 122 241-385 24-178 (334)
209 PRK10820 DNA-binding transcrip 98.7 1.1E-07 2.3E-12 102.2 13.1 158 201-388 198-393 (520)
210 PRK15429 formate hydrogenlyase 98.7 1.6E-07 3.4E-12 104.3 13.6 121 204-352 373-521 (686)
211 PRK09862 putative ATP-dependen 98.7 4.1E-08 8.9E-13 104.1 8.0 140 205-377 189-391 (506)
212 PF14532 Sigma54_activ_2: Sigm 98.7 4.5E-08 9.8E-13 86.5 6.5 79 211-306 2-83 (138)
213 PRK05022 anaerobic nitric oxid 98.6 3.5E-07 7.5E-12 98.1 14.2 154 205-388 185-376 (509)
214 PF12774 AAA_6: Hydrolytic ATP 98.6 5.2E-07 1.1E-11 86.8 13.9 172 241-433 32-223 (231)
215 PF00910 RNA_helicase: RNA hel 98.6 4E-08 8.7E-13 83.1 5.4 61 244-304 1-61 (107)
216 KOG0745 Putative ATP-dependent 98.6 1.5E-07 3.2E-12 95.7 9.9 130 241-374 226-386 (564)
217 COG1221 PspF Transcriptional r 98.6 1.1E-07 2.4E-12 97.4 8.5 159 203-389 74-266 (403)
218 PF13173 AAA_14: AAA domain 98.6 2.4E-07 5.2E-12 80.8 9.4 116 241-379 2-127 (128)
219 PTZ00111 DNA replication licen 98.6 2.4E-07 5.1E-12 103.1 10.7 130 241-388 492-658 (915)
220 KOG0741 AAA+-type ATPase [Post 98.6 5E-07 1.1E-11 93.8 11.8 135 242-385 539-684 (744)
221 COG3829 RocR Transcriptional r 98.6 9.1E-07 2E-11 92.7 13.7 125 200-352 238-391 (560)
222 COG1220 HslU ATP-dependent pro 98.5 1.4E-06 3.1E-11 86.3 14.1 69 208-276 16-85 (444)
223 COG0606 Predicted ATPase with 98.5 9.3E-08 2E-12 98.8 6.1 48 203-265 175-222 (490)
224 KOG2035 Replication factor C, 98.5 1.2E-06 2.7E-11 84.6 13.0 164 201-400 7-212 (351)
225 KOG1942 DNA helicase, TBP-inte 98.5 1.9E-06 4.2E-11 83.8 14.0 58 343-403 326-396 (456)
226 PF03969 AFG1_ATPase: AFG1-lik 98.5 1.2E-07 2.6E-12 97.0 6.2 97 237-352 58-168 (362)
227 KOG0990 Replication factor C, 98.5 4.5E-07 9.7E-12 89.2 9.2 159 200-394 34-210 (360)
228 PHA02624 large T antigen; Prov 98.5 6.6E-07 1.4E-11 95.5 11.1 125 237-373 427-561 (647)
229 TIGR03015 pepcterm_ATPase puta 98.5 5E-06 1.1E-10 81.2 16.4 128 243-389 45-207 (269)
230 TIGR00764 lon_rel lon-related 98.5 2E-06 4.3E-11 93.9 14.0 50 204-268 15-64 (608)
231 PF01637 Arch_ATPase: Archaeal 98.5 1.2E-06 2.6E-11 82.8 10.7 152 241-409 20-228 (234)
232 PF05729 NACHT: NACHT domain 98.4 2E-06 4.4E-11 76.9 11.1 131 242-388 1-164 (166)
233 PF13401 AAA_22: AAA domain; P 98.4 8.6E-07 1.9E-11 76.7 8.4 38 241-278 4-49 (131)
234 TIGR02915 PEP_resp_reg putativ 98.4 2.4E-06 5.3E-11 89.8 12.5 153 205-388 137-328 (445)
235 PRK10923 glnG nitrogen regulat 98.4 3.1E-06 6.6E-11 89.7 12.9 154 205-388 136-327 (469)
236 PRK05917 DNA polymerase III su 98.4 1.2E-05 2.7E-10 79.6 15.8 111 241-374 19-154 (290)
237 KOG0478 DNA replication licens 98.4 1.6E-06 3.6E-11 92.4 10.0 161 208-388 430-627 (804)
238 PRK11361 acetoacetate metaboli 98.4 3.3E-06 7.1E-11 89.0 12.3 119 206-352 142-288 (457)
239 PRK05818 DNA polymerase III su 98.3 1.1E-05 2.3E-10 78.5 14.5 113 239-374 5-147 (261)
240 TIGR01818 ntrC nitrogen regula 98.3 4.7E-06 1E-10 88.1 13.1 153 207-389 134-324 (463)
241 PRK07132 DNA polymerase III su 98.3 1.4E-05 3.1E-10 79.8 15.6 121 241-385 18-160 (299)
242 PRK07276 DNA polymerase III su 98.3 4.2E-05 9E-10 76.0 18.3 119 240-384 23-172 (290)
243 KOG1051 Chaperone HSP104 and r 98.3 3.8E-06 8.3E-11 93.5 11.5 122 208-351 563-710 (898)
244 KOG1514 Origin recognition com 98.3 1.6E-05 3.5E-10 85.4 15.3 130 243-390 424-592 (767)
245 PHA02774 E1; Provisional 98.3 7E-06 1.5E-10 87.5 12.2 113 237-374 430-555 (613)
246 PF00931 NB-ARC: NB-ARC domain 98.3 1.1E-05 2.4E-10 79.4 12.7 145 240-410 18-197 (287)
247 PLN03210 Resistant to P. syrin 98.2 1.6E-05 3.5E-10 93.3 15.5 154 198-389 175-366 (1153)
248 PRK13406 bchD magnesium chelat 98.2 4.9E-06 1.1E-10 90.1 10.0 119 242-378 26-173 (584)
249 KOG1970 Checkpoint RAD17-RFC c 98.2 2.7E-05 5.9E-10 81.6 14.9 169 201-392 76-285 (634)
250 PRK15115 response regulator Gl 98.2 8.7E-06 1.9E-10 85.6 11.5 126 241-388 157-323 (444)
251 PF00493 MCM: MCM2/3/5 family 98.1 1.5E-06 3.1E-11 88.3 3.8 131 242-390 58-224 (331)
252 cd01120 RecA-like_NTPases RecA 98.1 2E-05 4.4E-10 69.9 10.7 63 244-306 2-99 (165)
253 PHA00729 NTP-binding motif con 98.1 4.3E-06 9.2E-11 79.8 6.5 28 242-269 18-45 (226)
254 COG5271 MDN1 AAA ATPase contai 98.1 1.9E-05 4.1E-10 90.7 11.3 129 241-388 1543-1704(4600)
255 COG2204 AtoC Response regulato 98.1 1.2E-05 2.6E-10 84.1 8.9 155 204-389 138-331 (464)
256 KOG2227 Pre-initiation complex 98.1 0.00012 2.5E-09 75.8 15.3 159 207-391 150-342 (529)
257 KOG1968 Replication factor C, 98.0 2.4E-05 5.2E-10 87.7 10.8 168 202-390 315-505 (871)
258 TIGR02237 recomb_radB DNA repa 98.0 3.6E-05 7.9E-10 72.5 9.8 40 237-276 8-50 (209)
259 TIGR01618 phage_P_loop phage n 98.0 1.4E-05 3.1E-10 76.2 7.0 104 241-347 12-140 (220)
260 PF05621 TniB: Bacterial TniB 98.0 5.2E-05 1.1E-09 75.1 11.0 149 217-387 43-227 (302)
261 PRK10365 transcriptional regul 98.0 4E-05 8.6E-10 80.4 10.6 87 208-306 140-247 (441)
262 PF13207 AAA_17: AAA domain; P 98.0 6.8E-06 1.5E-10 70.2 3.7 31 244-274 2-32 (121)
263 PRK15455 PrkA family serine pr 97.9 1.8E-05 4E-10 84.3 7.5 65 203-274 72-137 (644)
264 COG3604 FhlA Transcriptional r 97.9 2.4E-05 5.2E-10 81.4 7.8 91 203-305 219-330 (550)
265 KOG2170 ATPase of the AAA+ sup 97.9 4E-05 8.6E-10 75.2 8.3 92 208-305 83-191 (344)
266 COG1485 Predicted ATPase [Gene 97.9 1.8E-05 3.8E-10 79.4 5.8 98 239-355 63-175 (367)
267 PF05707 Zot: Zonular occluden 97.9 6.5E-05 1.4E-09 70.3 8.8 114 244-374 3-146 (193)
268 PRK00131 aroK shikimate kinase 97.9 1.6E-05 3.4E-10 72.1 4.5 35 239-273 2-36 (175)
269 PRK07261 topology modulation p 97.8 3.3E-05 7.1E-10 70.9 6.5 100 244-388 3-102 (171)
270 TIGR02688 conserved hypothetic 97.8 0.00014 3.1E-09 75.2 11.8 60 241-304 209-272 (449)
271 PRK14722 flhF flagellar biosyn 97.8 4.9E-05 1.1E-09 78.0 8.2 104 241-360 137-267 (374)
272 COG1618 Predicted nucleotide k 97.8 7.4E-05 1.6E-09 67.1 8.2 25 241-265 5-29 (179)
273 PRK12723 flagellar biosynthesi 97.8 0.00028 6E-09 73.0 13.2 65 240-304 173-266 (388)
274 COG1241 MCM2 Predicted ATPase 97.8 2.6E-05 5.5E-10 85.1 5.3 163 207-389 286-485 (682)
275 COG1116 TauB ABC-type nitrate/ 97.8 0.00011 2.5E-09 70.5 8.8 23 243-265 31-53 (248)
276 PF10443 RNA12: RNA12 protein; 97.8 0.00065 1.4E-08 70.2 14.8 83 344-428 186-297 (431)
277 PRK08118 topology modulation p 97.8 5.5E-05 1.2E-09 69.2 6.3 32 243-274 3-34 (167)
278 COG1373 Predicted ATPase (AAA+ 97.7 0.00034 7.3E-09 72.8 12.9 132 235-390 32-183 (398)
279 PF13604 AAA_30: AAA domain; P 97.7 0.00036 7.8E-09 65.5 11.9 64 241-304 18-105 (196)
280 KOG0480 DNA replication licens 97.7 5.4E-05 1.2E-09 80.5 6.6 164 206-390 344-545 (764)
281 cd01394 radB RadB. The archaea 97.7 0.00024 5.1E-09 67.4 10.5 38 237-274 15-55 (218)
282 PRK09361 radB DNA repair and r 97.7 0.00021 4.6E-09 68.1 10.0 39 237-275 19-60 (225)
283 cd01124 KaiC KaiC is a circadi 97.7 0.00028 6.1E-09 64.8 10.4 30 244-273 2-34 (187)
284 cd03281 ABC_MSH5_euk MutS5 hom 97.7 0.00015 3.2E-09 69.0 8.8 104 242-359 30-161 (213)
285 PF14516 AAA_35: AAA-like doma 97.7 0.00061 1.3E-08 69.2 13.6 133 241-387 31-214 (331)
286 PRK06067 flagellar accessory p 97.7 0.00029 6.2E-09 67.7 10.7 38 237-274 21-61 (234)
287 COG5245 DYN1 Dynein, heavy cha 97.7 0.00021 4.5E-09 82.0 10.7 140 238-389 1491-1660(3164)
288 PF06309 Torsin: Torsin; Inte 97.7 7E-05 1.5E-09 64.9 5.4 52 208-265 26-77 (127)
289 KOG2680 DNA helicase TIP49, TB 97.6 0.00025 5.5E-09 69.6 9.3 59 343-404 318-388 (454)
290 PRK14737 gmk guanylate kinase; 97.6 0.00023 5E-09 66.3 8.7 64 367-434 118-186 (186)
291 PF05272 VirE: Virulence-assoc 97.6 0.00029 6.3E-09 66.3 9.2 113 237-373 48-169 (198)
292 cd03283 ABC_MutS-like MutS-lik 97.6 0.00025 5.4E-09 66.8 8.8 98 241-355 25-151 (199)
293 PRK13947 shikimate kinase; Pro 97.6 6E-05 1.3E-09 68.6 4.2 32 243-274 3-34 (171)
294 PF00437 T2SE: Type II/IV secr 97.6 0.00018 3.9E-09 70.6 7.9 91 202-303 99-208 (270)
295 PRK05800 cobU adenosylcobinami 97.6 0.00024 5.2E-09 65.2 8.0 64 243-306 3-90 (170)
296 cd00464 SK Shikimate kinase (S 97.6 6.7E-05 1.5E-09 66.7 4.1 31 243-273 1-31 (154)
297 PRK03839 putative kinase; Prov 97.6 6.2E-05 1.4E-09 69.3 3.9 31 243-273 2-32 (180)
298 TIGR02012 tigrfam_recA protein 97.6 0.00034 7.4E-09 70.5 9.4 70 237-306 51-147 (321)
299 PRK08533 flagellar accessory p 97.5 0.00074 1.6E-08 65.0 11.2 37 237-273 20-59 (230)
300 PF03266 NTPase_1: NTPase; In 97.5 0.00021 4.5E-09 65.5 6.9 23 243-265 1-23 (168)
301 PF00519 PPV_E1_C: Papillomavi 97.5 0.00019 4.2E-09 73.0 7.2 115 237-375 258-384 (432)
302 PRK00625 shikimate kinase; Pro 97.5 8E-05 1.7E-09 68.5 4.1 32 243-274 2-33 (173)
303 COG3283 TyrR Transcriptional r 97.5 0.0008 1.7E-08 67.6 11.3 131 195-352 192-344 (511)
304 cd00983 recA RecA is a bacter 97.5 0.00038 8.3E-09 70.2 9.0 70 237-306 51-147 (325)
305 cd01393 recA_like RecA is a b 97.5 0.00042 9.2E-09 65.9 8.9 39 237-275 15-62 (226)
306 PRK13949 shikimate kinase; Pro 97.5 8.8E-05 1.9E-09 68.0 4.0 33 242-274 2-34 (169)
307 cd00544 CobU Adenosylcobinamid 97.5 0.00055 1.2E-08 62.8 9.2 63 244-306 2-87 (169)
308 PF13671 AAA_33: AAA domain; P 97.5 5.4E-05 1.2E-09 66.5 2.5 27 244-270 2-28 (143)
309 TIGR03499 FlhF flagellar biosy 97.5 0.00056 1.2E-08 67.9 10.0 61 241-301 194-281 (282)
310 PRK13765 ATP-dependent proteas 97.5 0.00021 4.5E-09 78.3 7.2 51 202-267 26-76 (637)
311 PRK09376 rho transcription ter 97.5 0.0011 2.3E-08 68.3 11.7 23 244-266 172-194 (416)
312 PRK04040 adenylate kinase; Pro 97.5 0.00043 9.2E-09 64.6 8.2 30 241-270 2-33 (188)
313 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00066 1.4E-08 65.0 9.6 40 237-276 15-63 (235)
314 PRK08154 anaerobic benzoate ca 97.5 0.00026 5.7E-09 71.2 7.0 58 211-273 108-165 (309)
315 COG0703 AroK Shikimate kinase 97.4 0.0001 2.2E-09 67.3 3.6 34 241-274 2-35 (172)
316 PRK13948 shikimate kinase; Pro 97.4 0.00015 3.2E-09 67.3 4.7 34 240-273 9-42 (182)
317 PF13191 AAA_16: AAA ATPase do 97.4 7.6E-05 1.6E-09 68.2 2.5 37 241-277 24-63 (185)
318 PRK05703 flhF flagellar biosyn 97.4 0.0021 4.5E-08 67.5 13.4 63 241-303 221-310 (424)
319 PRK11823 DNA repair protein Ra 97.4 0.0005 1.1E-08 72.6 8.6 70 237-306 76-170 (446)
320 PRK05973 replicative DNA helic 97.4 0.0013 2.7E-08 63.6 10.7 38 237-274 60-100 (237)
321 COG4619 ABC-type uncharacteriz 97.4 0.00043 9.4E-09 62.8 6.8 23 243-265 31-53 (223)
322 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.2E-09 66.8 4.0 29 244-272 2-30 (183)
323 PRK14532 adenylate kinase; Pro 97.4 0.00015 3.3E-09 67.1 4.1 30 243-272 2-31 (188)
324 PF13086 AAA_11: AAA domain; P 97.4 0.00016 3.4E-09 68.2 4.2 25 241-265 16-41 (236)
325 PRK00771 signal recognition pa 97.4 0.0015 3.4E-08 68.5 11.9 61 214-275 69-132 (437)
326 PRK06217 hypothetical protein; 97.4 0.00016 3.6E-09 66.8 4.1 31 243-273 3-33 (183)
327 KOG2228 Origin recognition com 97.4 0.001 2.2E-08 66.4 9.8 156 208-390 25-222 (408)
328 PRK14531 adenylate kinase; Pro 97.4 0.00019 4.1E-09 66.4 4.5 32 241-272 2-33 (183)
329 smart00072 GuKc Guanylate kina 97.4 0.00081 1.8E-08 62.3 8.7 62 367-432 116-182 (184)
330 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.0006 1.3E-08 61.3 7.6 99 240-356 24-144 (157)
331 PRK11889 flhF flagellar biosyn 97.4 0.0024 5.1E-08 65.9 12.5 58 213-274 217-277 (436)
332 PF13479 AAA_24: AAA domain 97.4 0.00029 6.4E-09 66.9 5.6 60 242-304 4-80 (213)
333 cd02021 GntK Gluconate kinase 97.3 0.00018 3.9E-09 63.9 3.9 28 244-271 2-29 (150)
334 PRK13946 shikimate kinase; Pro 97.3 0.00018 3.9E-09 66.7 3.9 34 241-274 10-43 (184)
335 KOG2383 Predicted ATPase [Gene 97.3 0.00046 1E-08 70.2 6.8 26 240-265 113-138 (467)
336 TIGR01313 therm_gnt_kin carboh 97.3 0.00018 3.9E-09 64.9 3.6 28 244-271 1-28 (163)
337 PRK05057 aroK shikimate kinase 97.3 0.00023 5E-09 65.3 4.4 34 241-274 4-37 (172)
338 cd02020 CMPK Cytidine monophos 97.3 0.00021 4.6E-09 62.8 3.9 30 244-273 2-31 (147)
339 cd01121 Sms Sms (bacterial rad 97.3 0.0025 5.4E-08 65.7 12.1 69 237-305 78-171 (372)
340 cd01428 ADK Adenylate kinase ( 97.3 0.00022 4.8E-09 66.0 4.0 29 244-272 2-30 (194)
341 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00089 1.9E-08 65.8 8.3 86 204-303 57-160 (264)
342 PRK12608 transcription termina 97.3 0.0026 5.7E-08 65.1 11.9 24 243-266 135-158 (380)
343 PRK08233 hypothetical protein; 97.3 0.001 2.3E-08 60.7 8.2 33 242-274 4-37 (182)
344 PRK04841 transcriptional regul 97.3 0.0046 1E-07 70.7 15.2 145 241-410 32-220 (903)
345 KOG3347 Predicted nucleotide k 97.3 0.00025 5.3E-09 63.0 3.7 41 241-283 7-47 (176)
346 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00091 2E-08 65.5 8.1 39 237-275 32-73 (259)
347 COG3854 SpoIIIAA ncharacterize 97.3 0.0015 3.3E-08 62.1 9.1 26 241-266 137-162 (308)
348 cd03222 ABC_RNaseL_inhibitor T 97.3 0.00092 2E-08 61.8 7.6 65 241-305 25-102 (177)
349 PRK03731 aroL shikimate kinase 97.2 0.00032 6.9E-09 63.9 4.4 33 242-274 3-35 (171)
350 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.00091 2E-08 59.5 7.1 66 239-305 24-101 (144)
351 cd03243 ABC_MutS_homologs The 97.2 0.0013 2.9E-08 61.7 8.6 64 241-304 29-120 (202)
352 TIGR02782 TrbB_P P-type conjug 97.2 0.001 2.3E-08 66.5 8.2 62 241-302 132-214 (299)
353 PRK06581 DNA polymerase III su 97.2 0.0078 1.7E-07 58.0 13.6 125 241-388 15-162 (263)
354 PRK04296 thymidine kinase; Pro 97.2 0.0021 4.5E-08 60.0 9.7 30 243-272 4-36 (190)
355 PRK14530 adenylate kinase; Pro 97.2 0.00034 7.3E-09 66.5 4.4 31 242-272 4-34 (215)
356 cd03287 ABC_MSH3_euk MutS3 hom 97.2 0.0015 3.3E-08 62.5 8.9 99 241-355 31-157 (222)
357 PF04665 Pox_A32: Poxvirus A32 97.2 0.008 1.7E-07 58.1 13.8 125 241-388 13-171 (241)
358 PRK06762 hypothetical protein; 97.2 0.00042 9.2E-09 62.7 4.8 33 241-273 2-34 (166)
359 PF06431 Polyoma_lg_T_C: Polyo 97.2 0.0016 3.5E-08 65.8 9.2 144 216-380 138-291 (417)
360 KOG3354 Gluconate kinase [Carb 97.2 0.0012 2.5E-08 59.1 7.3 164 239-431 10-187 (191)
361 PRK09354 recA recombinase A; P 97.2 0.0015 3.3E-08 66.5 9.0 70 237-306 56-152 (349)
362 PRK00300 gmk guanylate kinase; 97.2 0.0027 5.9E-08 59.4 10.3 27 240-266 4-30 (205)
363 PRK13764 ATPase; Provisional 97.2 0.0011 2.5E-08 71.9 8.6 62 241-303 257-335 (602)
364 TIGR02858 spore_III_AA stage I 97.2 0.0013 2.9E-08 64.7 8.3 25 242-266 112-136 (270)
365 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.00097 2.1E-08 63.0 7.1 23 241-263 29-51 (204)
366 COG1855 ATPase (PilT family) [ 97.2 0.00039 8.4E-09 71.6 4.5 97 149-266 170-288 (604)
367 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0014 3E-08 61.5 8.0 21 242-262 29-49 (200)
368 PRK06547 hypothetical protein; 97.2 0.00046 1E-08 63.5 4.6 34 240-273 14-47 (172)
369 cd03216 ABC_Carb_Monos_I This 97.2 0.0013 2.8E-08 59.7 7.4 27 239-265 24-50 (163)
370 COG5271 MDN1 AAA ATPase contai 97.2 0.0044 9.5E-08 72.4 12.7 132 242-389 889-1049(4600)
371 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0015 3.3E-08 57.4 7.4 29 240-268 21-49 (133)
372 PF08298 AAA_PrkA: PrkA AAA do 97.1 0.0011 2.3E-08 67.2 7.2 62 206-274 59-122 (358)
373 PF06745 KaiC: KaiC; InterPro 97.1 0.0014 3.1E-08 62.5 7.8 39 237-275 15-57 (226)
374 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00044 9.4E-09 63.6 4.2 31 242-272 4-34 (188)
375 PRK14528 adenylate kinase; Pro 97.1 0.00044 9.6E-09 64.3 4.2 30 243-272 3-32 (186)
376 PRK02496 adk adenylate kinase; 97.1 0.0004 8.7E-09 64.1 3.7 29 244-272 4-32 (184)
377 TIGR01613 primase_Cterm phage/ 97.1 0.0028 6.1E-08 63.5 10.1 82 212-303 54-139 (304)
378 COG2804 PulE Type II secretory 97.1 0.0017 3.8E-08 68.2 8.8 84 203-303 234-338 (500)
379 COG1102 Cmk Cytidylate kinase 97.1 0.00045 9.8E-09 62.2 3.7 28 244-271 3-30 (179)
380 TIGR00767 rho transcription te 97.1 0.0026 5.5E-08 65.8 9.6 25 242-266 169-193 (415)
381 PRK00409 recombination and DNA 97.1 0.00096 2.1E-08 75.1 7.1 98 241-355 327-453 (782)
382 cd00227 CPT Chloramphenicol (C 97.1 0.00043 9.2E-09 63.5 3.6 32 241-272 2-33 (175)
383 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0037 8E-08 60.3 10.2 49 237-287 17-68 (237)
384 PF13245 AAA_19: Part of AAA d 97.1 0.00093 2E-08 52.9 4.7 23 243-265 12-35 (76)
385 cd03284 ABC_MutS1 MutS1 homolo 97.0 0.002 4.3E-08 61.4 7.8 61 242-302 31-119 (216)
386 PTZ00088 adenylate kinase 1; P 97.0 0.00055 1.2E-08 65.9 4.0 31 243-273 8-38 (229)
387 PF07693 KAP_NTPase: KAP famil 97.0 0.0061 1.3E-07 61.1 11.7 30 239-268 18-47 (325)
388 PLN02200 adenylate kinase fami 97.0 0.00069 1.5E-08 65.4 4.6 30 241-270 43-72 (234)
389 COG4650 RtcR Sigma54-dependent 97.0 0.0022 4.9E-08 62.9 8.0 65 241-305 208-295 (531)
390 cd01128 rho_factor Transcripti 97.0 0.0026 5.6E-08 62.0 8.5 27 241-267 16-42 (249)
391 cd03246 ABCC_Protease_Secretio 97.0 0.003 6.6E-08 57.7 8.5 25 241-265 28-52 (173)
392 TIGR01351 adk adenylate kinase 97.0 0.0006 1.3E-08 64.5 3.9 29 244-272 2-30 (210)
393 COG4133 CcmA ABC-type transpor 97.0 0.003 6.5E-08 58.4 8.2 25 241-265 28-52 (209)
394 TIGR03263 guanyl_kin guanylate 97.0 0.0019 4.2E-08 59.0 7.2 25 243-267 3-27 (180)
395 KOG1051 Chaperone HSP104 and r 97.0 0.0088 1.9E-07 67.3 13.4 121 241-378 208-354 (898)
396 smart00534 MUTSac ATPase domai 97.0 0.002 4.3E-08 59.8 7.2 61 244-304 2-90 (185)
397 PRK04301 radA DNA repair and r 97.0 0.0032 6.9E-08 63.5 9.3 40 237-276 98-146 (317)
398 cd02019 NK Nucleoside/nucleoti 97.0 0.0012 2.6E-08 51.1 4.7 29 244-272 2-31 (69)
399 PRK00279 adk adenylate kinase; 97.0 0.00068 1.5E-08 64.3 4.0 29 244-272 3-31 (215)
400 PF13238 AAA_18: AAA domain; P 97.0 0.00054 1.2E-08 58.5 3.0 22 244-265 1-22 (129)
401 PRK13833 conjugal transfer pro 97.0 0.0021 4.6E-08 64.9 7.5 62 241-302 144-225 (323)
402 TIGR00416 sms DNA repair prote 96.9 0.0035 7.7E-08 66.3 9.3 69 237-305 90-183 (454)
403 PRK14527 adenylate kinase; Pro 96.9 0.00071 1.5E-08 62.9 3.6 31 241-271 6-36 (191)
404 PRK04328 hypothetical protein; 96.9 0.0062 1.3E-07 59.3 10.3 50 237-288 19-71 (249)
405 COG1936 Predicted nucleotide k 96.9 0.00061 1.3E-08 62.0 2.9 29 243-272 2-30 (180)
406 cd03286 ABC_MSH6_euk MutS6 hom 96.9 0.0035 7.6E-08 59.9 8.4 102 241-358 30-159 (218)
407 TIGR02533 type_II_gspE general 96.9 0.0031 6.8E-08 67.3 8.8 86 203-303 218-322 (486)
408 cd01131 PilT Pilus retraction 96.9 0.0022 4.7E-08 60.2 6.8 24 243-266 3-26 (198)
409 PRK04182 cytidylate kinase; Pr 96.9 0.00084 1.8E-08 61.1 3.9 29 243-271 2-30 (180)
410 PF08740 BCS1_N: BCS1 N termin 96.9 0.038 8.3E-07 51.1 15.1 134 59-209 27-187 (187)
411 PF10236 DAP3: Mitochondrial r 96.9 0.016 3.5E-07 58.3 13.4 99 292-390 156-280 (309)
412 cd03228 ABCC_MRP_Like The MRP 96.9 0.0035 7.5E-08 57.2 7.9 27 239-265 26-52 (171)
413 PRK12727 flagellar biosynthesi 96.9 0.0047 1E-07 65.9 9.8 65 240-304 349-440 (559)
414 TIGR01069 mutS2 MutS2 family p 96.9 0.0034 7.4E-08 70.6 9.3 23 242-264 323-345 (771)
415 TIGR01448 recD_rel helicase, p 96.9 0.0064 1.4E-07 68.0 11.4 64 241-304 338-428 (720)
416 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0097 2.1E-07 54.0 10.4 107 243-371 4-152 (159)
417 PRK12724 flagellar biosynthesi 96.9 0.014 3.1E-07 60.8 12.8 35 241-275 223-261 (432)
418 COG4088 Predicted nucleotide k 96.9 0.0015 3.3E-08 61.1 5.1 24 243-266 3-26 (261)
419 PLN02199 shikimate kinase 96.9 0.0019 4.2E-08 64.1 6.1 34 241-274 102-135 (303)
420 PRK01184 hypothetical protein; 96.9 0.00099 2.1E-08 61.4 3.9 29 243-272 3-31 (184)
421 PF00448 SRP54: SRP54-type pro 96.9 0.0043 9.4E-08 58.3 8.2 25 241-265 1-25 (196)
422 cd03247 ABCC_cytochrome_bd The 96.9 0.0055 1.2E-07 56.2 8.8 27 239-265 26-52 (178)
423 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0011 2.3E-08 60.0 4.0 29 244-272 3-31 (171)
424 COG0563 Adk Adenylate kinase a 96.8 0.0012 2.5E-08 61.2 4.2 28 243-270 2-29 (178)
425 PRK13894 conjugal transfer ATP 96.8 0.0039 8.5E-08 63.0 8.3 62 241-302 148-229 (319)
426 PF00406 ADK: Adenylate kinase 96.8 0.00074 1.6E-08 60.3 2.8 26 246-271 1-26 (151)
427 PRK06696 uridine kinase; Valid 96.8 0.0042 9.1E-08 59.3 8.1 39 241-279 22-63 (223)
428 cd03238 ABC_UvrA The excision 96.8 0.0044 9.5E-08 57.2 7.9 24 240-263 20-43 (176)
429 PTZ00202 tuzin; Provisional 96.8 0.011 2.4E-07 61.7 11.5 75 203-289 258-332 (550)
430 PLN03187 meiotic recombination 96.8 0.005 1.1E-07 62.7 9.0 26 237-262 122-147 (344)
431 PF13521 AAA_28: AAA domain; P 96.8 0.00081 1.8E-08 60.8 2.9 26 244-270 2-27 (163)
432 COG0467 RAD55 RecA-superfamily 96.8 0.0041 8.8E-08 60.8 8.1 50 237-288 19-71 (260)
433 TIGR02525 plasmid_TraJ plasmid 96.8 0.0045 9.8E-08 63.8 8.6 62 242-303 150-236 (372)
434 PTZ00035 Rad51 protein; Provis 96.8 0.0057 1.2E-07 62.3 9.2 27 237-263 114-140 (337)
435 COG2874 FlaH Predicted ATPases 96.8 0.0039 8.4E-08 58.8 7.2 33 232-264 17-51 (235)
436 PHA02530 pseT polynucleotide k 96.8 0.0013 2.7E-08 65.5 4.2 32 241-272 2-34 (300)
437 PF01745 IPT: Isopentenyl tran 96.8 0.0013 2.9E-08 61.9 4.0 150 243-406 3-164 (233)
438 PRK14526 adenylate kinase; Pro 96.8 0.0013 2.8E-08 62.5 4.0 29 243-271 2-30 (211)
439 PF00488 MutS_V: MutS domain V 96.8 0.0074 1.6E-07 58.3 9.3 97 242-354 44-168 (235)
440 PRK10436 hypothetical protein; 96.8 0.0057 1.2E-07 64.8 9.1 85 204-303 195-298 (462)
441 PF08433 KTI12: Chromatin asso 96.8 0.0027 5.8E-08 62.6 6.2 62 244-305 4-83 (270)
442 TIGR02655 circ_KaiC circadian 96.7 0.0072 1.6E-07 64.6 9.9 51 237-289 17-71 (484)
443 PF00625 Guanylate_kin: Guanyl 96.7 0.0034 7.4E-08 58.0 6.3 29 241-269 2-30 (183)
444 cd02027 APSK Adenosine 5'-phos 96.7 0.0019 4E-08 57.8 4.4 30 244-273 2-34 (149)
445 PRK10078 ribose 1,5-bisphospho 96.7 0.0015 3.2E-08 60.6 3.9 30 242-271 3-32 (186)
446 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0057 1.2E-07 55.9 7.7 25 241-265 26-50 (173)
447 COG2805 PilT Tfp pilus assembl 96.7 0.0062 1.4E-07 60.2 8.2 52 202-272 104-160 (353)
448 PF08423 Rad51: Rad51; InterP 96.7 0.0097 2.1E-07 58.2 9.4 115 237-356 34-192 (256)
449 PRK09519 recA DNA recombinatio 96.7 0.0084 1.8E-07 67.0 9.9 70 237-306 56-152 (790)
450 PRK12726 flagellar biosynthesi 96.7 0.011 2.3E-07 60.9 9.9 37 240-276 205-244 (407)
451 TIGR02788 VirB11 P-type DNA tr 96.7 0.0059 1.3E-07 61.4 8.1 28 239-266 142-169 (308)
452 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0055 1.2E-07 55.5 7.0 25 241-265 21-45 (162)
453 PLN02674 adenylate kinase 96.6 0.0021 4.5E-08 62.4 4.4 31 241-271 31-61 (244)
454 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0079 1.7E-07 57.4 8.4 38 237-274 16-56 (229)
455 TIGR01420 pilT_fam pilus retra 96.6 0.0051 1.1E-07 62.8 7.5 62 241-302 122-205 (343)
456 COG0529 CysC Adenylylsulfate k 96.6 0.0032 6.8E-08 57.7 5.2 37 241-277 23-62 (197)
457 TIGR02768 TraA_Ti Ti-type conj 96.6 0.01 2.2E-07 66.6 10.4 63 242-304 369-451 (744)
458 smart00487 DEXDc DEAD-like hel 96.6 0.0066 1.4E-07 54.8 7.4 24 242-265 25-49 (201)
459 PRK11174 cysteine/glutathione 96.6 0.0043 9.4E-08 67.8 7.2 28 238-265 373-400 (588)
460 PRK13889 conjugal transfer rel 96.6 0.012 2.7E-07 67.5 11.0 62 243-304 364-445 (988)
461 PF02367 UPF0079: Uncharacteri 96.6 0.0047 1E-07 53.5 6.0 64 241-304 15-100 (123)
462 cd03223 ABCD_peroxisomal_ALDP 96.6 0.012 2.5E-07 53.6 8.9 27 239-265 25-51 (166)
463 COG1419 FlhF Flagellar GTP-bin 96.6 0.0064 1.4E-07 62.6 7.8 81 241-335 203-310 (407)
464 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0023 4.9E-08 62.2 4.4 31 244-274 2-35 (249)
465 PRK05541 adenylylsulfate kinas 96.6 0.0029 6.3E-08 57.9 4.9 26 241-266 7-32 (176)
466 cd01130 VirB11-like_ATPase Typ 96.6 0.002 4.4E-08 59.7 3.8 26 241-266 25-50 (186)
467 KOG0477 DNA replication licens 96.6 0.0015 3.1E-08 69.8 3.1 116 243-369 484-627 (854)
468 PRK14529 adenylate kinase; Pro 96.6 0.0017 3.7E-08 62.2 3.2 28 243-270 2-29 (223)
469 PRK11176 lipid transporter ATP 96.6 0.0047 1E-07 67.4 7.1 27 239-265 367-393 (582)
470 PRK12339 2-phosphoglycerate ki 96.6 0.0028 6E-08 59.6 4.6 29 241-269 3-31 (197)
471 cd02022 DPCK Dephospho-coenzym 96.5 0.0024 5.2E-08 58.9 4.0 30 244-274 2-31 (179)
472 cd01122 GP4d_helicase GP4d_hel 96.5 0.012 2.6E-07 57.6 9.2 40 237-276 26-69 (271)
473 COG2274 SunT ABC-type bacterio 96.5 0.0046 9.9E-08 68.8 6.8 28 238-265 496-523 (709)
474 PF09848 DUF2075: Uncharacteri 96.5 0.0045 9.8E-08 63.3 6.3 24 242-265 2-25 (352)
475 PRK00889 adenylylsulfate kinas 96.5 0.0034 7.3E-08 57.4 4.9 33 241-273 4-39 (175)
476 KOG2543 Origin recognition com 96.5 0.012 2.7E-07 59.8 9.1 130 240-387 29-193 (438)
477 TIGR02868 CydC thiol reductant 96.5 0.0047 1E-07 66.6 6.7 27 239-265 359-385 (529)
478 cd03214 ABC_Iron-Siderophores_ 96.5 0.012 2.5E-07 54.2 8.5 26 240-265 24-49 (180)
479 PF01583 APS_kinase: Adenylyls 96.5 0.0028 6.1E-08 57.3 4.2 36 242-277 3-41 (156)
480 KOG0482 DNA replication licens 96.5 0.0042 9.1E-08 65.0 5.5 169 208-390 343-542 (721)
481 TIGR02538 type_IV_pilB type IV 96.5 0.012 2.7E-07 64.0 9.5 85 204-303 293-396 (564)
482 COG3267 ExeA Type II secretory 96.4 0.031 6.8E-07 54.1 11.0 131 241-390 50-216 (269)
483 TIGR00064 ftsY signal recognit 96.4 0.0083 1.8E-07 59.3 7.3 37 240-276 71-110 (272)
484 PLN02459 probable adenylate ki 96.4 0.0035 7.5E-08 61.3 4.6 30 243-272 31-60 (261)
485 TIGR02239 recomb_RAD51 DNA rep 96.4 0.011 2.3E-07 59.8 8.2 27 237-263 92-118 (316)
486 TIGR02322 phosphon_PhnN phosph 96.4 0.0025 5.5E-08 58.3 3.4 25 243-267 3-27 (179)
487 TIGR02236 recomb_radA DNA repa 96.4 0.0077 1.7E-07 60.4 7.2 40 237-276 91-139 (310)
488 PRK10416 signal recognition pa 96.4 0.007 1.5E-07 61.2 6.7 34 241-274 114-150 (318)
489 TIGR02238 recomb_DMC1 meiotic 96.4 0.0087 1.9E-07 60.3 7.4 53 237-289 92-153 (313)
490 cd03276 ABC_SMC6_euk Eukaryoti 96.4 0.014 3E-07 54.8 8.4 25 241-265 20-45 (198)
491 PRK13657 cyclic beta-1,2-gluca 96.4 0.0061 1.3E-07 66.7 6.7 28 238-265 358-385 (588)
492 PRK12338 hypothetical protein; 96.4 0.0032 7E-08 63.3 4.2 29 241-269 4-32 (319)
493 cd04160 Arfrp1 Arfrp1 subfamil 96.4 0.023 4.9E-07 50.7 9.3 22 243-264 1-22 (167)
494 PF05970 PIF1: PIF1-like helic 96.4 0.012 2.7E-07 60.5 8.5 27 241-267 22-48 (364)
495 PRK09825 idnK D-gluconate kina 96.4 0.0058 1.3E-07 56.3 5.5 27 242-268 4-30 (176)
496 PRK14021 bifunctional shikimat 96.4 0.0035 7.6E-08 67.9 4.5 32 243-274 8-39 (542)
497 TIGR02857 CydD thiol reductant 96.3 0.0072 1.6E-07 65.2 6.9 28 238-265 345-372 (529)
498 TIGR03796 NHPM_micro_ABC1 NHPM 96.3 0.0063 1.4E-07 68.1 6.6 28 238-265 502-529 (710)
499 COG0194 Gmk Guanylate kinase [ 96.3 0.029 6.2E-07 51.9 9.5 63 367-433 116-183 (191)
500 PLN02165 adenylate isopentenyl 96.3 0.0037 8.1E-08 63.1 4.1 35 241-275 43-77 (334)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-97 Score=747.14 Aligned_cols=421 Identities=51% Similarity=0.815 Sum_probs=397.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhcCCCCccEEEEecCCCCCccHHHHHHHHHhhccCCccccc
Q 047029 13 TFAASAMLVRTILNEVQTITNQFIPQKLQDILSSKLEGLFGKFSDQLTLIIEQSEGFSVNEIYQAAELYLSTRITPSIQQ 92 (455)
Q Consensus 13 ~~~~~~~S~~a~~~~~~~~~~~~~P~~l~~~i~~~~~~l~~~~~~~~~~~i~e~~~~~~n~~~~a~~~yl~~~~~~~~~~ 92 (455)
++|+.+||++|++|++|+|+++++|.+++.|+.+++++|++.+++|.++.|.|++|+.+|++|.|+|.||++++++.+.|
T Consensus 2 ~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~~g~~~n~~~~aie~yl~~k~~~~~~r 81 (457)
T KOG0743|consen 2 SVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQDGVFRNQLYVAIEVYLSSKSSAIAKR 81 (457)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehhccchHHHHHHHHHHhhhccchhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEccCCCEEEEeeCCeEEEEEEEEeecCCCCCCCCCCcccccccceeEEEeeCcchhHHHHHhhhhH
Q 047029 93 LRVSQAPREKSLSVTINEGQKVVDTFEGMQLTWELVTTENQKTSLDYDSGLYASETAHKSFHLSFSKLFKDKVLNKYLPY 172 (455)
Q Consensus 93 l~~~~~~~~~~~~~~~~~~~~~~d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~ 172 (455)
++.+...+++++++.++++++|.|+|+||+++|++++..++..... ....++|+|+|+|++++|+.|+++||+|
T Consensus 82 l~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~------~~~~~~r~~~L~f~k~~~e~V~~syl~~ 155 (457)
T KOG0743|consen 82 LTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFV------EREREKRYFELTFHKKPRELVTLSYLPY 155 (457)
T ss_pred hhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCccccc------ccCCcceEEEEEecCccHHHhHHhHHHH
Confidence 9999999999999999999999999999999999999887765322 1245789999999999999999999999
Q ss_pred HHHHHHHHHhccceEEEeec-----------CcccccccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCC
Q 047029 173 VAERSKAIKETKKVIKLYSL-----------CAADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWK 241 (455)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~-----------~~w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~ 241 (455)
+.+.+++|..+++.+++|++ +.|+++.|+||+||++|+|++++|++|++||..|++++++|+++|++|+
T Consensus 156 v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK 235 (457)
T KOG0743|consen 156 VVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh
Confidence 99999999999999999877 3799999999999999999999999999999999999999999999999
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCC--
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDEN-- 319 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~-- 319 (455)
|||||||||||||||+++||||+|++++|+++++++..+++|+++|..+++++||+||||||.+.++.++.....+..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~ 315 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGD 315 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998877665433333
Q ss_pred cchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC-CCchHHH
Q 047029 320 NSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS-HSMFDEI 398 (455)
Q Consensus 320 ~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~-~~l~~ei 398 (455)
.+.+++|||||++||+|++||+++||||||||+++|||||+||||||+||+|++|++++++.|+++||+..+ |.++++|
T Consensus 316 ~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~ei 395 (457)
T KOG0743|consen 316 LSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEI 395 (457)
T ss_pred cceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHH
Confidence 467999999999999999999999999999999999999999999999999999999999999999999975 9999999
Q ss_pred HHhhccccCchh---HHHhccC-CHHHHHHHHHHHHHHhhhhccc
Q 047029 399 EELIKEVEVTPA---EEFMKSE-DADVALNGLVDFLLRKKEQTMK 439 (455)
Q Consensus 399 ~~ll~~~~~tpa---~~l~~~~-~~~~al~~l~~~l~~~~~~~~~ 439 (455)
++++.+..+||| |.+|++. |++.++++|+++|++++.+..+
T Consensus 396 e~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~ 440 (457)
T KOG0743|consen 396 ERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNK 440 (457)
T ss_pred HHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999 8999877 8999999999999998875554
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=333.26 Aligned_cols=199 Identities=27% Similarity=0.349 Sum_probs=172.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..||++++|.+++.++|.+.++.++.+|+.|.++|+.||+|+|||||||||||.||+|+|++.+..|+.+..+++
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
++..-++++|.-+ ..||||||||||++.. .|.....+++.+-++|+-+||+.|||+-.. +++-||++||++
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~--kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~ 300 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGA--KRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRP 300 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhc--ccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCc
Confidence 3556677787544 5799999999999976 555555556778899999999999999765 789999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc---CCCchHHHHHhhc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK---SHSMFDEIEELIK 403 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~---~~~l~~ei~~ll~ 403 (455)
+.|||||+||||||.+|+||+|+.++|.+|++.+.... +...++.+.++.+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~ 354 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTE 354 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcC
Confidence 99999999999999999999999999999999887643 2333444444433
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=313.96 Aligned_cols=229 Identities=24% Similarity=0.336 Sum_probs=186.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
+..+|++++|.+++|++|.+.+..++++|+.|.++|+.+++|||||||||||||++|+|+|++.+.+|+.+...++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred --CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 278 --RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 278 --~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
+++..++++|..+. .||||||||||++...+ . +.+ .+...+.+++||+.|||+... .+++||++||+|+
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R--~-g~~--~~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd 581 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSR--G-GSS--SGVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPD 581 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhcc--C-CCc--cchHHHHHHHHHHHccccccc--CcEEEEeccCChh
Confidence 46788999998775 68999999999987522 2 222 266789999999999999765 6799999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch---------------HHHHHhhccccCchhHHHhccCC
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF---------------DEIEELIKEVEVTPAEEFMKSED 418 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~---------------~ei~~ll~~~~~tpa~~l~~~~~ 418 (455)
.||+||+||||||..|++|.|+.+.|.+|++.++......-. .||..+|+++...++++-+. -
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~--a 659 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE--A 659 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--c
Confidence 999999999999999999999999999999999876533222 34444454444333322222 2
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 047029 419 ADVALNGLVDFLLRKKEQTMK 439 (455)
Q Consensus 419 ~~~al~~l~~~l~~~~~~~~~ 439 (455)
.....+.+.++++..+.....
T Consensus 660 ~~i~~~hf~~al~~~r~s~~~ 680 (693)
T KOG0730|consen 660 TEITWQHFEEALKAVRPSLTS 680 (693)
T ss_pred ccccHHHHHHHHHhhcccCCH
Confidence 344556666666666555443
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-35 Score=298.85 Aligned_cols=243 Identities=21% Similarity=0.322 Sum_probs=192.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
-+..+|+++++.++++.++...+..++++|+.|+++|+..|.|+|||||||||||.||+|+||+.|.+|+.+...++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred ---CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+++..++.+|..+. .||||||||||++.+.++.. ....+.+.+++||..|||+..+ .++.||++||+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~-----~s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRP 657 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE-----GSSVSSRVVNQLLTELDGLEER--RGVYVIAATNRP 657 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC-----CchhHHHHHHHHHHHhcccccc--cceEEEeecCCC
Confidence 46788999997764 69999999999998733322 1345678999999999999776 569999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC-----chH--------------HHHHhhccccCchhHHH
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS-----MFD--------------EIEELIKEVEVTPAEEF 413 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~-----l~~--------------ei~~ll~~~~~tpa~~l 413 (455)
|.+|||++||||||..++++.|+.++|..|++........+ .++ ++..|++++.+.+.++-
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988743222 223 44445555444444222
Q ss_pred hc---cCCHHHHH---------HHHHHHHHHhhhhccccchhhhhhhhh
Q 047029 414 MK---SEDADVAL---------NGLVDFLLRKKEQTMKCNEEENESLKN 450 (455)
Q Consensus 414 ~~---~~~~~~al---------~~l~~~l~~~~~~~~~~~~~~~~~~k~ 450 (455)
+. ....+.++ ..+.+++++.+....++.++....+++
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k 786 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNK 786 (802)
T ss_pred HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhh
Confidence 21 11122222 356677777776666655555555543
No 5
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-35 Score=273.04 Aligned_cols=222 Identities=24% Similarity=0.333 Sum_probs=185.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..++.+++|.+-+|++|.+.++.++.+.+.|+++|+.||||+|||||||||||+|++|+|+.....|+.+..+++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqk 228 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
++...++..|.-+ ..|+||||||||++.. +|...+.+.+.+-++.+-+|||.|||+-.. .++-||++||+.
T Consensus 229 ylgegprmvrdvfrlakenapsiifideidaiat--krfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 229 YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 4566778887544 5799999999999865 666666666777889999999999999665 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc---------------CCCchHHHHHhhccccCchh---HHHh
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK---------------SHSMFDEIEELIKEVEVTPA---EEFM 414 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~---------------~~~l~~ei~~ll~~~~~tpa---~~l~ 414 (455)
+.|||||+||||+|.+|+||+|+..+++-++....... +.....+|..+|.++.+.+. ++++
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvv 384 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVV 384 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceee
Confidence 99999999999999999999999999988887665432 11223577777777766665 4455
Q ss_pred ccCCHHHHHHHH
Q 047029 415 KSEDADVALNGL 426 (455)
Q Consensus 415 ~~~~~~~al~~l 426 (455)
-..|.+.+....
T Consensus 385 l~kd~e~ay~~~ 396 (408)
T KOG0727|consen 385 LQKDFEKAYKTV 396 (408)
T ss_pred eHHHHHHHHHhh
Confidence 555666666544
No 6
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-35 Score=295.40 Aligned_cols=179 Identities=30% Similarity=0.422 Sum_probs=159.9
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc------
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL------ 277 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~------ 277 (455)
.+|+++-|.++.|+++.+.++ |++.|..|.++|-.-|+|+||.||||||||.||+|+|.+.+.+|+....+++
T Consensus 301 v~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 479999999999999987665 9999999999999999999999999999999999999999999999988876
Q ss_pred CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 278 RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 278 ~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
.+...++.+|..++ .||||||||||++...+.. . +....++++++||..|||+..+ +++|||++||.|+.|
T Consensus 380 vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~--~---~~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~L 452 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP--S---DQHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEAL 452 (752)
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc--c---HHHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhh
Confidence 36789999997764 6999999999998652211 1 1225678999999999999776 679999999999999
Q ss_pred CccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 356 DPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 356 d~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
|+||.||||||+||.+|.|+...|.+|++.|+..-
T Consensus 453 D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 453 DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 99999999999999999999999999999999864
No 7
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-34 Score=303.15 Aligned_cols=227 Identities=27% Similarity=0.373 Sum_probs=187.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
+.+.+|++++|.++.|++|.+.++ |+++|+.|.++|...|+|+||.||||||||.||+|+|.+.|.+|+.++.+++
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 344789999999999999999886 9999999999999999999999999999999999999999999999998875
Q ss_pred ---CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
...+.++.+|.... .|||+||||||++...+. .......+.+...++++||..|||+.+. .++|++++||++
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~-G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG-GKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRP 460 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEeccccccccccc-ccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCc
Confidence 34788999997765 699999999999865322 1123345567789999999999999776 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC----------------chHHHHHhhccccCchh---HHH
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS----------------MFDEIEELIKEVEVTPA---EEF 413 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~----------------l~~ei~~ll~~~~~tpa---~~l 413 (455)
+.||+||+||||||.+|+++.|+...|..|++.++...... ...+|..++.++++.++ ..-
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~ 540 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLRE 540 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCc
Confidence 99999999999999999999999999999999998754221 12456666666665555 223
Q ss_pred hccCCHHHHHHHHHHHHH
Q 047029 414 MKSEDADVALNGLVDFLL 431 (455)
Q Consensus 414 ~~~~~~~~al~~l~~~l~ 431 (455)
+...+.+.|++.++..++
T Consensus 541 i~~~~~~~a~~Rvi~G~~ 558 (774)
T KOG0731|consen 541 IGTKDLEYAIERVIAGME 558 (774)
T ss_pred cchhhHHHHHHHHhcccc
Confidence 345677777777776664
No 8
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-34 Score=271.41 Aligned_cols=222 Identities=26% Similarity=0.306 Sum_probs=180.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..+|.+++|.+.+.++|.+.++.++.+|++|..+|+.+|+|++|||+||||||.||+|+||.....|+.+-.+++
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999888877665
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.+..-++++|.-+ ..|+|+||||||++.. .|-...+++..+-++++-+|||.+||+-++ +.+-||++||..
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt--KRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT--KRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhcc--ccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 2456667777544 5799999999999865 444555556677889999999999999775 789999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc---------------CCCchHHHHHhhccccCchh-HHHh--
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK---------------SHSMFDEIEELIKEVEVTPA-EEFM-- 414 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~---------------~~~l~~ei~~ll~~~~~tpa-~~l~-- 414 (455)
+.|||||+||||+|.+|+|+.|+...++.||..+-... +.-...+|.++|.++.+.+. +.-|
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhc
Confidence 99999999999999999999999999998887554321 22234577777777666555 2222
Q ss_pred ccCCHHHHHHHH
Q 047029 415 KSEDADVALNGL 426 (455)
Q Consensus 415 ~~~~~~~al~~l 426 (455)
..+|+..|.+.+
T Consensus 415 t~~DF~ka~e~V 426 (440)
T KOG0726|consen 415 TMEDFKKAKEKV 426 (440)
T ss_pred cHHHHHHHHHHH
Confidence 345555555544
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-33 Score=286.58 Aligned_cols=198 Identities=25% Similarity=0.345 Sum_probs=167.4
Q ss_pred cccCC-CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 198 INLDH-PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 198 ~~~~~-p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
..+++ ...|.+++|.+....++.+.+.. +++|+.|..+|+.|+||+|||||||||||+||+|+|++++.+++.+...+
T Consensus 180 ~~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApe 258 (802)
T KOG0733|consen 180 LEFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPE 258 (802)
T ss_pred cCCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchh
Confidence 34444 34799999999999999998875 99999999999999999999999999999999999999999999999877
Q ss_pred c------CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc--CCCceEEE
Q 047029 277 L------RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS--CGDERIIV 346 (455)
Q Consensus 277 ~------~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~ivI 346 (455)
+ +++..++++|.++. .|||+||||||++.+.+... ...-.++.+++||+.||++... .|..++||
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-----qreMErRiVaQLlt~mD~l~~~~~~g~~VlVI 333 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-----QREMERRIVAQLLTSMDELSNEKTKGDPVLVI 333 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-----HHHHHHHHHHHHHHhhhcccccccCCCCeEEE
Confidence 6 46789999998875 69999999999997633221 1223568899999999998654 35779999
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC---chHHHHHh
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS---MFDEIEEL 401 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~---l~~ei~~l 401 (455)
++||+||.|||||+|+||||..|.+..|+..+|..|++..+....+. .+..|+.+
T Consensus 334 gATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~l 391 (802)
T KOG0733|consen 334 GATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKL 391 (802)
T ss_pred ecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhc
Confidence 99999999999999999999999999999999999999988754333 33444444
No 10
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-33 Score=291.44 Aligned_cols=197 Identities=25% Similarity=0.379 Sum_probs=166.0
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc-----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL----- 277 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~----- 277 (455)
..+||+++|.+++|.+|++.+..++++|+.|.. |...+.|+|||||||||||.+|+|+|.++...|+.+...++
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 358999999999999999999999999998876 77778899999999999999999999999999999987775
Q ss_pred -CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 278 -RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 278 -~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
+++.++|+.|.++. +|||||+||+|.+.+.+++.++++ +.-.+.+|+||..|||+.......++||++||+||.
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG---GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG---GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc---ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 57899999998775 699999999999998766655443 566789999999999998766688999999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHH-HHHHHHHh---hcccCCCchHHHHHhhc
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGG-FKILAFNY---LKIKSHSMFDEIEELIK 403 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~-~~~L~~~~---l~~~~~~l~~ei~~ll~ 403 (455)
|||||+||||||.-++++.++..+ +..+++.. +..+......+|++.|.
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCP 876 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCC
Confidence 999999999999999999987665 33444432 23334444556666654
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=259.76 Aligned_cols=183 Identities=28% Similarity=0.386 Sum_probs=161.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
+.++++-++|.+.+.++|.+-++.+.++|+.|..+|++.|+|+|||||||||||.||+|+|.+..+.++.++.+++
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 278 --RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 278 --~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
++..-++++|.-+ ..|+|||+||||++.. .|..+.++++.+-++++-+|||.+||+... .++-||++||+.+
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs--~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnrid 297 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--SRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRID 297 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeeccccccc--ccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccc
Confidence 3445677777444 4799999999999876 333344445667789999999999999765 6789999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.|||||+||||+|.+|+||+|+.++|.+|++.+-.
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 99999999999999999999999999999987654
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=274.04 Aligned_cols=186 Identities=26% Similarity=0.363 Sum_probs=157.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..+|++|+|.+.+|++|.+.+..++.+++.|.++|+.+++|+|||||||||||++++++|++++.+++.+..+.+
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.+...++++|..+ ..|+||||||||.++.. +.....+.+...+..+.++++.+|++... .+++||+|||++
T Consensus 219 ~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~--r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~ 294 (398)
T PTZ00454 219 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATK--RFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRA 294 (398)
T ss_pred hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccc--cccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCc
Confidence 2345567777544 57999999999998752 22222222234456788999999998654 568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.||||++||||||.+|++++|+.++|..|++.++...
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~ 332 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM 332 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888654
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=250.50 Aligned_cols=229 Identities=21% Similarity=0.288 Sum_probs=180.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..++++++|.+.+.+++++.+..++.+++.|..+|+.+|+|+|+|||||||||.+|+|.|...+..|..+-..++
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999888776655543
Q ss_pred ---CChHHHHHHHHh--hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVS--TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~--~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.+..-++..|.- .+.|+||||||+|++.. +|..+...++.+-++++-+|||.+||+.+. +.+-||++||+.
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt--KRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRv 320 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT--KRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRV 320 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhcc--ccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeecccc
Confidence 234455666643 45799999999999865 444444445667789999999999999775 778899999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc---cCCCchHHHHHhhcc---ccCchh-----HHHhccCCHHH
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI---KSHSMFDEIEELIKE---VEVTPA-----EEFMKSEDADV 421 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~---~~~~l~~ei~~ll~~---~~~tpa-----~~l~~~~~~~~ 421 (455)
+.|||||+|.||+|.+|+||.|+.++|..|++.+-.. .+...++|+++-... ++..+. .-.+++...+.
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEV 400 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccc
Confidence 9999999999999999999999999999998876543 345567777765443 222222 22334554555
Q ss_pred HHHHHHHHHHHh
Q 047029 422 ALNGLVDFLLRK 433 (455)
Q Consensus 422 al~~l~~~l~~~ 433 (455)
.-+.+++.+...
T Consensus 401 ~heDfmegI~eV 412 (424)
T KOG0652|consen 401 THEDFMEGILEV 412 (424)
T ss_pred cHHHHHHHHHHH
Confidence 555555555443
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-31 Score=252.60 Aligned_cols=230 Identities=24% Similarity=0.288 Sum_probs=181.4
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
+.-.+..|+.+++|-.++.+.|.+-++.++.+|+.|..+|+.||+|+|||||||||||..|+|+||..+..|+.+-.+++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 34455679999999999999999999999999999999999999999999999999999999999999999999887775
Q ss_pred ------CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc
Q 047029 278 ------RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT 349 (455)
Q Consensus 278 ------~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT 349 (455)
++..-++++|.-+ ++-||||+||||++.. .|.....+++++-++++-+|++.+||+-.+ +++-|.++|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaigg--arfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmat 323 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGG--ARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMAT 323 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccC--ccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeec
Confidence 3456677777443 4679999999999865 344444455677789999999999999665 789999999
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc---CCCchH------------HHHHhhccccCchh---H
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK---SHSMFD------------EIEELIKEVEVTPA---E 411 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~---~~~l~~------------ei~~ll~~~~~tpa---~ 411 (455)
|+|+.|||||+||||+|.+++|+.|+.+.|..|++.+.... ...-++ +|...|.++.+.+. +
T Consensus 324 nrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 324 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 99999999999999999999999999999988887654432 112233 44444444444333 2
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 047029 412 EFMKSEDADVALNGLVDFLL 431 (455)
Q Consensus 412 ~l~~~~~~~~al~~l~~~l~ 431 (455)
......|+-.|++.+++..+
T Consensus 404 k~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 404 KVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 23334556666666665544
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.9e-31 Score=279.79 Aligned_cols=229 Identities=28% Similarity=0.375 Sum_probs=189.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
...+|++++|.++.|+++.+.++ |++.|..|..+|..-|+|+||+||||||||.||+|+|.+.+.+++.++.++.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 34689999999999999998775 9999999999999999999999999999999999999999999999998875
Q ss_pred --CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 278 --RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 278 --~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
.+.+.+|.+|.++. .||||||||||++.. .|..+.++.+.+..+++++||..|||...+ .+++|+++||+|+
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr--~Rg~g~GggnderEQTLNQlLvEmDGF~~~--~gviviaaTNRpd 299 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR--QRGAGLGGGNDEREQTLNQLLVEMDGFGGN--EGVIVIAATNRPD 299 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhccc--ccCCCCCCCchHHHHHHHHHHhhhccCCCC--CceEEEecCCCcc
Confidence 36799999998876 499999999999865 333334555667788999999999999754 6799999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC---c------------hHHHHHhhccccCchh---HHHhc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS---M------------FDEIEELIKEVEVTPA---EEFMK 415 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~---l------------~~ei~~ll~~~~~tpa---~~l~~ 415 (455)
-|||||+||||||.+|.++.|+...|+++++-+....... . ..+++.++.++.+..+ ...+.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~ 379 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEIT 379 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEe
Confidence 9999999999999999999999999999999776543221 1 1345555555554444 22334
Q ss_pred cCCHHHHHHHHHHHHHHhhh
Q 047029 416 SEDADVALNGLVDFLLRKKE 435 (455)
Q Consensus 416 ~~~~~~al~~l~~~l~~~~~ 435 (455)
..+.+.|.+.++-..+++-+
T Consensus 380 ~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 380 MRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred ccchHHHHHHHhcCcCcCCc
Confidence 56788888888877776544
No 16
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=257.66 Aligned_cols=243 Identities=22% Similarity=0.302 Sum_probs=189.0
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-----
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR----- 278 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~----- 278 (455)
..|++|+|..+.|+-|.+.+-.++.-|++|+.+-.|| +|+|++||||||||+||+|+|.+.+..|+.+..+.+.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRG 287 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRG 287 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhcc
Confidence 5789999999999999999999999999999877666 5999999999999999999999999999999887763
Q ss_pred ChHHHHHHHHhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC--ceEEEEEcCCCC
Q 047029 279 SNSDLRRLLVST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD--ERIIVFTTNYKE 353 (455)
Q Consensus 279 ~~~~l~~ll~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~--~~ivI~TTN~~~ 353 (455)
....+.++|.++ ..|++|||||||.+.. +++. +++...+++.-++||..|||+...... -++|+++||.|+
T Consensus 288 eSEKlvRlLFemARfyAPStIFiDEIDslcs---~RG~-s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 288 ESEKLVRLLFEMARFYAPSTIFIDEIDSLCS---QRGG-SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred chHHHHHHHHHHHHHhCCceeehhhHHHHHh---cCCC-ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 235566666555 3799999999999865 2222 234556778889999999998655322 167778999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc---------------CCCchHHHHHhhccccCchhH-------
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK---------------SHSMFDEIEELIKEVEVTPAE------- 411 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~---------------~~~l~~ei~~ll~~~~~tpa~------- 411 (455)
.||+||+| ||...|++|.|+.++|+.|++..|+.. .+...++|..+|+++.+.+.+
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 999999999999999999999988743 223345777777776665552
Q ss_pred ----HHhccCCHH--HHHHHHHHHHHHhhhhccccchhhhhhhhhhcc
Q 047029 412 ----EFMKSEDAD--VALNGLVDFLLRKKEQTMKCNEEENESLKNEED 453 (455)
Q Consensus 412 ----~l~~~~~~~--~al~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~ 453 (455)
..+..+.++ +...++.+++.+.++......-+..|.+-.++|
T Consensus 442 ~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 442 PREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred cHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 122334444 666777778877777666545556666655554
No 17
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=4.4e-30 Score=269.64 Aligned_cols=183 Identities=24% Similarity=0.383 Sum_probs=150.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc----------EE
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD----------IY 270 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~----------v~ 270 (455)
.++.+|++|+|.+.++++|.+.+..++.+++.|+.+|+++++|+|||||||||||++++++|++++.+ ++
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999765 22
Q ss_pred EEecccc------CChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 271 DMELASL------RSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 271 ~l~~~~~------~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
.+..+.+ .+...++.+|..+ ..|+||||||+|.++..+ ..+. ........+++||+.|||+.+.
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R--~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTR--GSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhccc--CCCc--cchHHHHHHHHHHHHhcccccC
Confidence 2322222 1234566666443 258999999999997522 1111 1122356778999999999764
Q ss_pred CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 339 CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 339 ~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
++++||+|||+++.||||++||||||.+|+|++|+.+++++|+++|+..
T Consensus 332 --~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 --DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred --CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999999999999999864
No 18
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=2.1e-29 Score=259.64 Aligned_cols=232 Identities=24% Similarity=0.328 Sum_probs=177.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++++|.++++++|.+.+..++.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+++.+.++.+.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999887752
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|... ..|+||||||||.++.. +.......+...+.++..+++.+|+.... .+++||+|||++
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~--r~~~~~~~~~~~~~~l~~lL~~ld~~~~~--~~v~VI~aTn~~ 280 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAK--RTDSGTSGDREVQRTLMQLLAEMDGFDPR--GNVKIIAATNRI 280 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcc--cccCCCCccHHHHHHHHHHHHhccccCCC--CCEEEEEecCCh
Confidence 335566676554 46899999999998752 22222222234456778899999987543 568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC---CchHHHHHhhccccCchh--HHH--------hccCCH
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH---SMFDEIEELIKEVEVTPA--EEF--------MKSEDA 419 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~---~l~~ei~~ll~~~~~tpa--~~l--------~~~~~~ 419 (455)
+.+|+|++||||||..|+++.|+.++|.+|++.++..... ....++.....+ ++++ ..+ +++...
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g--~sgadl~~l~~eA~~~a~~~~~~ 358 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEG--ASGADLKAICTEAGMFAIRDDRT 358 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999865422 223444444332 4444 111 223333
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 047029 420 DVALNGLVDFLLRKKEQTM 438 (455)
Q Consensus 420 ~~al~~l~~~l~~~~~~~~ 438 (455)
....+.+.++++..+....
T Consensus 359 ~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 359 EVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred CcCHHHHHHHHHHHhcccc
Confidence 3556666666666554433
No 19
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=4.6e-29 Score=276.44 Aligned_cols=244 Identities=23% Similarity=0.341 Sum_probs=185.8
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc-----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL----- 277 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~----- 277 (455)
..+|++++|.+.+|++|.+.+..++.+++.|.++|..+++|+|||||||||||++|+++|++++.+++.+..+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~v 528 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWV 528 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhccc
Confidence 458999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred -CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 278 -RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 278 -~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
.++..++++|..+ ..|+||||||||.+++.++ .. .........+++||..|||+... .+++||+|||+++.
T Consensus 529 Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~--~~--~~~~~~~~~~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ 602 (733)
T TIGR01243 529 GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARG--AR--FDTSVTDRIVNQLLTEMDGIQEL--SNVVVIAATNRPDI 602 (733)
T ss_pred CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCC--CC--CCccHHHHHHHHHHHHhhcccCC--CCEEEEEeCCChhh
Confidence 3456788888665 4689999999999976221 11 11234467889999999998654 57999999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc---hH------------HHHHhhccccCchhHHHhcc---
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM---FD------------EIEELIKEVEVTPAEEFMKS--- 416 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l---~~------------ei~~ll~~~~~tpa~~l~~~--- 416 (455)
||||++||||||.+|++++|+.++|.+|++.+........ .+ +|..++.++.+.+....+..
T Consensus 603 ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 603 LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999998876442211 22 33333333333222111110
Q ss_pred -----------CCHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhc
Q 047029 417 -----------EDADVALNGLVDFLLRKKEQTMKCNEEENESLKNEE 452 (455)
Q Consensus 417 -----------~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~k~~~ 452 (455)
.+.....+.+.+++++.++...+...+..+.+++.+
T Consensus 683 ~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 683 EKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred hhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 012345566777777766665554445666665544
No 20
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=260.44 Aligned_cols=187 Identities=27% Similarity=0.326 Sum_probs=157.5
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR- 278 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~- 278 (455)
..++.+|++|+|.+.++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|++++.+++.+..+++.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999988877652
Q ss_pred -----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 279 -----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 279 -----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
+...++.+|..+ ..|+||||||||.++. .+....++.+...+.++..+|+.+||+... .++.||+|||+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~--kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr 331 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT--KRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNR 331 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc--cCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCC
Confidence 234466666543 4689999999999875 222222222334456778899999998544 56899999999
Q ss_pred CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 352 KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 352 ~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
++.||++++||||||.+|+|+.|+.++|.+|++.++...
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988654
No 21
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=5.4e-29 Score=264.56 Aligned_cols=186 Identities=29% Similarity=0.413 Sum_probs=157.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..+|++++|.+++|+++.+.+. ++++++.|.+.|..+++|+|||||||||||++++++|++++.+++.++.+.+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 345689999999999999987665 7899999999999999999999999999999999999999999999987764
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.+...++++|..+ ..|+||||||||.+...+ .............++++||+.||++... ++++||+|||++
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r--~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQR--GAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhcc--ccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 2456788888765 468999999999987522 2111222334457889999999998654 569999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS 391 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~ 391 (455)
+.||||++||||||.+|+++.|+.++|.+|++.++....
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~ 242 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK 242 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999987643
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=1.9e-28 Score=257.33 Aligned_cols=227 Identities=21% Similarity=0.203 Sum_probs=169.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
...+|++|+|.+.+|+.+.+....|. ..+.+.|+++++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 34689999999999999987665553 33567899999999999999999999999999999999999998764
Q ss_pred --CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 278 --RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 278 --~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
.++..++++|..+ ..||||||||||.++.... ...+.+.....+..++..|+.. ..+++||+|||+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~----~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~ 371 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSE----SKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNID 371 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcccc----CCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChh
Confidence 2456788888643 5799999999998865211 1112344566778888888753 35689999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc--hHHHHHhhcc-ccCchh--HHHhc-------cCCHHH
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM--FDEIEELIKE-VEVTPA--EEFMK-------SEDADV 421 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l--~~ei~~ll~~-~~~tpa--~~l~~-------~~~~~~ 421 (455)
.|||+++||||||..|+++.|+.++|.+|++.++....... ..++..++.. ..++.| +.++. ......
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~~l 451 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKREF 451 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999997642211 2233334332 235555 33221 122334
Q ss_pred HHHHHHHHHHHhhhhccc
Q 047029 422 ALNGLVDFLLRKKEQTMK 439 (455)
Q Consensus 422 al~~l~~~l~~~~~~~~~ 439 (455)
..+++.++++...+....
T Consensus 452 t~~dl~~a~~~~~Pls~~ 469 (489)
T CHL00195 452 TTDDILLALKQFIPLAQT 469 (489)
T ss_pred CHHHHHHHHHhcCCCccc
Confidence 567788888877776443
No 23
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=2.5e-28 Score=263.83 Aligned_cols=185 Identities=30% Similarity=0.409 Sum_probs=156.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
....+|++++|.+++|+++.+.+ .+++.++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 34568999999999999887655 578999999999999999999999999999999999999999999999887652
Q ss_pred ----ChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+. .||||||||||++... +....+..+.....++..||..|||.... .+++||+|||++
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~--r~~~~~~~~~e~~~~L~~LL~~~dg~~~~--~~ViVIaaTN~~ 331 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQ--RGAGIGGGNDEREQTLNQLLTEMDGFKGN--KGVIVIAATNRV 331 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhc--ccCCCCCCcHHHHHHHHHHHhhhccccCC--CCeeEEEecCch
Confidence 3456777886653 6899999999998652 22222223345567899999999998654 568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.+|+|++||||||.+|+++.|+.++|.+|++.++...
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~ 369 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK 369 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998764
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.2e-28 Score=257.16 Aligned_cols=185 Identities=28% Similarity=0.392 Sum_probs=162.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.+..+|++++|....|+.+.+.+..++.+++.|.+.|+.+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred ---CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.++..++++|..+. .||||||||+|.++..+.... .......+++||..|||+... .+++||+|||++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-----~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p 388 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-----DGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRP 388 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-----chHHHHHHHHHHHHhcCCCcc--CceEEEecCCCc
Confidence 35688999997765 799999999999976322111 112257899999999999665 669999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
+.+|||++||||||..|+++.|+.++|..+++.++.....
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~ 428 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP 428 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC
Confidence 9999999999999999999999999999999999985443
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8e-28 Score=251.32 Aligned_cols=188 Identities=23% Similarity=0.318 Sum_probs=164.7
Q ss_pred cccccccCCCC--CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 194 AADAINLDHPS--TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 194 ~w~~~~~~~p~--tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+.+.+.+..+. .|++++|..++|+.+.+.+..+.+.|..|...+++.+.|+|||||||||||.||.|+|...++.++.
T Consensus 652 aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis 731 (952)
T KOG0735|consen 652 ALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS 731 (952)
T ss_pred HhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE
Confidence 34556666554 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecccc------CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCce
Q 047029 272 MELASL------RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343 (455)
Q Consensus 272 l~~~~~------~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 343 (455)
+...++ .++..+|.+|..+ .+|||||+||+|.+.+. |..+ ..+...+.+++||..|||.-.- .++
T Consensus 732 vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPk--RGhD---sTGVTDRVVNQlLTelDG~Egl--~GV 804 (952)
T KOG0735|consen 732 VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPK--RGHD---STGVTDRVVNQLLTELDGAEGL--DGV 804 (952)
T ss_pred ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcc--cCCC---CCCchHHHHHHHHHhhcccccc--ceE
Confidence 987765 4678899999765 47999999999999872 2222 2356678899999999998553 679
Q ss_pred EEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 344 IIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 344 ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.|+++|.+||.|||||+||||+|.+++.+.|++.+|.++++..-.
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887655
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=5.3e-28 Score=227.82 Aligned_cols=189 Identities=21% Similarity=0.268 Sum_probs=154.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
...+||+++|+++.|+.- ..+..|+.+|+.|..|. |+++|+|||||||||++|+|+|++.+.+++.+..+++.
T Consensus 116 ~~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 116 SDITLDDVIGQEEAKRKC-RLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred ccccHhhhhchHHHHHHH-HHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 346899999999998765 44556999999888764 88999999999999999999999999999999988762
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
....+++++..+ ..|||+||||+|++.-.+.-+ . -.+.-...++.||..|||+.++ ++++.|++||+|+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ-e---lRGDVsEiVNALLTelDgi~en--eGVvtIaaTN~p~ 265 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ-E---LRGDVSEIVNALLTELDGIKEN--EGVVTIAATNRPE 265 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH-H---hcccHHHHHHHHHHhccCcccC--CceEEEeecCChh
Confidence 346778887655 479999999999986422111 1 1133456789999999999865 7799999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.||||++. ||...|+|..|+.++|..|++.|......++...+..+.
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~ 312 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA 312 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH
Confidence 99999999 999999999999999999999999876555544444443
No 27
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.9e-27 Score=235.51 Aligned_cols=171 Identities=19% Similarity=0.166 Sum_probs=134.2
Q ss_pred HHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc------CChHHHHHHHHhhC-------CceEEEE
Q 047029 232 FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL------RSNSDLRRLLVSTG-------NRSILVI 298 (455)
Q Consensus 232 ~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~------~~~~~l~~ll~~~~-------~~~IL~i 298 (455)
+....|+.+|+|++||||||||||.+|+|+|+++|.+++.++.+++ +++..++++|..+. +||||||
T Consensus 139 ~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFI 218 (413)
T PLN00020 139 FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFI 218 (413)
T ss_pred hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEE
Confidence 3344689999999999999999999999999999999999998877 35688999996553 6999999
Q ss_pred ecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc--------c--ccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 299 EDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL--------W--SSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 299 DEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~--~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
||||.+++.+ .. .......+.....|++.+|+. | ......++||+|||+|+.|||||+||||||..
T Consensus 219 DEIDA~~g~r--~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 219 NDLDAGAGRF--GT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred ehhhhcCCCC--CC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 9999987622 11 111122344457899998863 3 12235689999999999999999999999996
Q ss_pred EEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhccccCch
Q 047029 369 IHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVEVTP 409 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~~tp 409 (455)
+ ..|+.++|..|++.++...+.. ..++.+++....-.+
T Consensus 295 i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~ 332 (413)
T PLN00020 295 Y--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQP 332 (413)
T ss_pred e--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCC
Confidence 5 5799999999999998875433 577888877654443
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.3e-28 Score=231.48 Aligned_cols=197 Identities=26% Similarity=0.341 Sum_probs=163.2
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-----
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR----- 278 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~----- 278 (455)
.+|+.+.|.-++..++++-+..++..|+.+.++|+.+|.|++||||||||||.+|+++|..++.+++.+..+.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 489999999999999999999999999999999999999999999999999999999999999999999888763
Q ss_pred -ChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 279 -SNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 279 -~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
+..-+++.|..+. .|||||+||||+... .+.......+..-+.|+-.|+|.|||.-.- +.+-+|+|||+|+.|
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigG--Rr~se~Ts~dreiqrTLMeLlnqmdgfd~l--~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGG--RRFSEGTSSDREIQRTLMELLNQMDGFDTL--HRVKTIMATNRPDTL 284 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhcc--EEeccccchhHHHHHHHHHHHHhhccchhc--ccccEEEecCCcccc
Confidence 3455667776554 589999999999865 223333334556788999999999998654 568899999999999
Q ss_pred CccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc---cCCCchHHHHHhhcc
Q 047029 356 DPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI---KSHSMFDEIEELIKE 404 (455)
Q Consensus 356 d~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~---~~~~l~~ei~~ll~~ 404 (455)
||||+||||+|..+++|.|+...|..+++-+-.. .+.--+++|..+.++
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~ 336 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG 336 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc
Confidence 9999999999999999999999998876644322 122235666666554
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=5.3e-27 Score=240.21 Aligned_cols=200 Identities=25% Similarity=0.319 Sum_probs=159.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++++|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+++.+..+.+.
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999999999888765542
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
....++.+|... ..|+||||||+|.+... +.....+.+...+.++..+++.+|++... +++.||+|||++
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~--~~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~v~vI~ttn~~ 271 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAK--RTDSGTSGDREVQRTLMQLLAELDGFDPR--GNVKVIAATNRP 271 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccc--cccCCCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEecCCh
Confidence 123455555443 46899999999998652 22222222334456778889889887443 568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC---CchHHHHHhhcc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH---SMFDEIEELIKE 404 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~---~l~~ei~~ll~~ 404 (455)
+.+|++++||||||..|+++.|+.++|..|++.++..... ....++.+...+
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g 326 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEG 326 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCC
Confidence 9999999999999999999999999999999998765322 234555555543
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-27 Score=233.66 Aligned_cols=206 Identities=23% Similarity=0.334 Sum_probs=169.3
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhc-CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC---
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS--- 279 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~--- 279 (455)
.+|++++|.+.+++++.+.+..++++|++|...+ ..+++|+|||||||||||++|+|+|++.|..++.+..+.+.+
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 5899999999999999999999999999997443 356899999999999999999999999999999999987743
Q ss_pred ---hHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 280 ---NSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 280 ---~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
+.-+..+|.-.. +|+||||||+|..+..+ + +.+.+....+-.++...+||+.+.....++|.++||+|..
T Consensus 169 gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--R---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--c---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 233344443333 69999999999987633 1 2233445566778999999998886667888899999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC---------------CchHHHHHhhccccCchhHHHhcc
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH---------------SMFDEIEELIKEVEVTPAEEFMKS 416 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~---------------~l~~ei~~ll~~~~~tpa~~l~~~ 416 (455)
||+|++| ||...++++.|+.++|++|++-+|..+.. ....++.++|..+.+.|+.++|..
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999999 99999999999999999999999986521 113578888888888888666644
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.94 E-value=4.9e-27 Score=195.64 Aligned_cols=97 Identities=41% Similarity=0.773 Sum_probs=93.5
Q ss_pred hccHHHHHHHHHHHhhhhc-CCCCccEEEEecCCCCCccHHHHHHHHHhhccCCcccccccccccCCCCceEEEccCCCE
Q 047029 35 FIPQKLQDILSSKLEGLFG-KFSDQLTLIIEQSEGFSVNEIYQAAELYLSTRITPSIQQLRVSQAPREKSLSVTINEGQK 113 (455)
Q Consensus 35 ~~P~~l~~~i~~~~~~l~~-~~~~~~~~~i~e~~~~~~n~~~~a~~~yl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 113 (455)
+||++||.++.++++++++ +++||+||+|+|++|+.+|++|+||++||+++++++++||++++++++++++++|++|++
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e~ 80 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEFDGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGEE 80 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeCCCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCCE
Confidence 6899999999999988886 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeEEEEEEEEee
Q 047029 114 VVDTFEGMQLTWELVTTE 131 (455)
Q Consensus 114 ~~d~f~g~~~~w~~~~~~ 131 (455)
|+|+|+|+++||.+++++
T Consensus 81 V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 81 VVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEECCEEEEEEEEccC
Confidence 999999999999998763
No 32
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.7e-27 Score=224.45 Aligned_cols=189 Identities=24% Similarity=0.294 Sum_probs=155.0
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc------
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL------ 277 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~------ 277 (455)
..|++++|.+..|+.|.+.+..+++.|++|..--+| .+|+|||||||||||.||+|+|.+.+-.|+.+..+++
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P-wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP-WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCc-ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 468899999999999999999999999999875455 4799999999999999999999999999999988876
Q ss_pred CChHHHHHHHHh--hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 278 RSNSDLRRLLVS--TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 278 ~~~~~l~~ll~~--~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
+++.-+..+|.- ...|+||||||||.+...+. .+ .....++.-.+||..|.|.-.. .++++|+++||-|+.|
T Consensus 209 ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~--en---EseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~L 282 (439)
T KOG0739|consen 209 ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS--EN---ESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVL 282 (439)
T ss_pred cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC--CC---chHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhH
Confidence 234444555533 34799999999998764221 11 2234556777899999998554 3679999999999999
Q ss_pred CccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch-HHHHHh
Q 047029 356 DPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF-DEIEEL 401 (455)
Q Consensus 356 d~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~-~ei~~l 401 (455)
|.|++| ||+..|++|.|...+|..+++.+++...|.+. .++..|
T Consensus 283 DsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL 327 (439)
T KOG0739|consen 283 DSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKEL 327 (439)
T ss_pred HHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHH
Confidence 999999 99999999999999999999999998877764 344444
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.7e-26 Score=262.68 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=141.7
Q ss_pred hHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC-----------------------------
Q 047029 229 RREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS----------------------------- 279 (455)
Q Consensus 229 ~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~----------------------------- 279 (455)
++..+.++|..+|+|+||+||||||||.||+|+|++.+++++.+.++++..
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 455678899999999999999999999999999999999999998766431
Q ss_pred --------------------hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc
Q 047029 280 --------------------NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS 337 (455)
Q Consensus 280 --------------------~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~ 337 (455)
...++.+|..+ .+||||+|||||++... .....++++|++.|||...
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~-----------ds~~ltL~qLLneLDg~~~ 1766 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN-----------ESNYLSLGLLVNSLSRDCE 1766 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC-----------ccceehHHHHHHHhccccc
Confidence 01245566544 57999999999998541 1223568999999998743
Q ss_pred c-CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC-----C-Cc------------hHHH
Q 047029 338 S-CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS-----H-SM------------FDEI 398 (455)
Q Consensus 338 ~-~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~-----~-~l------------~~ei 398 (455)
. ...+++||+|||+|+.|||||+||||||.+|+++.|+..+|++++...+...+ . .. .+|+
T Consensus 1767 ~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1767 RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 2 23579999999999999999999999999999999999999887765432111 1 11 2355
Q ss_pred HHhhccccCchh---HHHhccCCHHHHHHHHHHHHHH
Q 047029 399 EELIKEVEVTPA---EEFMKSEDADVALNGLVDFLLR 432 (455)
Q Consensus 399 ~~ll~~~~~tpa---~~l~~~~~~~~al~~l~~~l~~ 432 (455)
+.++.++...++ ...+...+.+.|+...+-.++.
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhh
Confidence 555555444444 1233445677777777655543
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=8e-26 Score=246.40 Aligned_cols=183 Identities=26% Similarity=0.419 Sum_probs=154.0
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc-----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL----- 277 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~----- 277 (455)
..+|+++.|.+..++++.+.+. ++..+..|..+|...++|+||+||||||||++++++|++++.+++.++++++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~-~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHH-HhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4579999999999999877665 6778888999999999999999999999999999999999999999988754
Q ss_pred -CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 278 -RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 278 -~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
.+...++.+|... ..|+||||||||.+.. .+.....+.......++++||..|||+... ..+++|+|||+++.
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~--~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~--~~vivIaaTN~p~~ 302 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR--QRGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRPDV 302 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhh--ccCCCCCCCchHHHHHHHHHHHhhhcccCC--CCeeEEEecCChhh
Confidence 2346677777655 3689999999999865 222222223344567899999999998664 56999999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
||+|++||||||.+|+++.|+.++|.+|++.++...
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998754
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=238.29 Aligned_cols=206 Identities=23% Similarity=0.299 Sum_probs=167.0
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEE
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDM 272 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l 272 (455)
...+.-.+|++++|.++++.++.+.+..++..|+.|..+++.+|||+|||||||||||++|+|+|..+ +..++.-
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr 335 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR 335 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh
Confidence 33445568999999999999999999999999999999999999999999999999999999999988 2333332
Q ss_pred ecccc------CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceE
Q 047029 273 ELASL------RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERI 344 (455)
Q Consensus 273 ~~~~~------~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 344 (455)
...+. +.+.+++-+|..+. .|+|||+||||-+.+.+.... +......++.||..|||+-++ +.++
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-----Eqih~SIvSTLLaLmdGldsR--gqVv 408 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-----EQIHASIVSTLLALMDGLDSR--GQVV 408 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-----HHhhhhHHHHHHHhccCCCCC--CceE
Confidence 22221 35678888887764 699999999998887543221 223456788999999999776 7799
Q ss_pred EEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc----------------hHHHHHhhccccCc
Q 047029 345 IVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM----------------FDEIEELIKEVEVT 408 (455)
Q Consensus 345 vI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l----------------~~ei~~ll~~~~~t 408 (455)
||++||+++.+||||+||||||..++|++|+.++|.+++..+-....++. ..++..+|.++.+.
T Consensus 409 vigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 409 VIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALI 488 (1080)
T ss_pred EEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999886654433222 34688888877776
Q ss_pred hh
Q 047029 409 PA 410 (455)
Q Consensus 409 pa 410 (455)
+.
T Consensus 489 ~~ 490 (1080)
T KOG0732|consen 489 AL 490 (1080)
T ss_pred hh
Confidence 66
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=5.2e-24 Score=236.24 Aligned_cols=181 Identities=27% Similarity=0.358 Sum_probs=154.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
+..+|++++|.+++++.|.+.+..++.+++.|+.+|+.+++|+|||||||||||++++++|++++.+++.+++..+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
+...++.+|... ..|+||||||||.+...+ ... .........+.|++.||++... ..++||++||+++
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r--~~~---~~~~~~~~~~~Ll~~ld~l~~~--~~vivI~atn~~~ 325 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKR--EEV---TGEVEKRVVAQLLTLMDGLKGR--GRVIVIGATNRPD 325 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccc--cCC---cchHHHHHHHHHHHHhhccccC--CCEEEEeecCChh
Confidence 235677777654 468999999999986521 111 1122346778899999998654 5688999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.||++++|+|||+.+|+++.|+.++|.+|++.+...
T Consensus 326 ~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 326 ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999977654
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.9e-24 Score=218.65 Aligned_cols=186 Identities=24% Similarity=0.285 Sum_probs=157.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
..+..|++++|...+|+.+.+.+..++.+++.|..+ .++.+|+||+||||||||+|++|+|.+.+..++.+..+++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 344679999999999999999999999999988875 45578999999999999999999999999999999988873
Q ss_pred ----ChHHHHHHHH--hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLV--STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~--~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
++..++.+|. ...+|+|+||||||.++..+ . ......+.....++|..+|+..+...+.++||+|||.|
T Consensus 226 ~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s---~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--S---DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--C---CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 2345566663 33579999999999998733 1 22234455777889999999988877789999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+.+|+|++| ||...+++|.|+.++|..+|.+++....+.+
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l 340 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGL 340 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999 9999999999999999999999998775544
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=5.3e-24 Score=216.83 Aligned_cols=182 Identities=24% Similarity=0.374 Sum_probs=141.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHH----HHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcE-EEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDR----FVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDI-YDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~----~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v-~~l~~~ 275 (455)
++.-.|++++- ..+.++.-+...+ -+-.|+.-.++|++.-+|+|||||||||||.+|+.+...|+..- -.++..
T Consensus 213 ~Pdf~Fe~mGI-GGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 213 NPDFNFESMGI-GGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred CCCCChhhccc-ccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 44457888642 1233333333332 22357888999999999999999999999999999999996532 234444
Q ss_pred cc------CChHHHHHHHHhhC----------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC
Q 047029 276 SL------RSNSDLRRLLVSTG----------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC 339 (455)
Q Consensus 276 ~~------~~~~~l~~ll~~~~----------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~ 339 (455)
++ +++.+++++|.++. .-.||++||||++.. ++++..++.+.....+++||.-|||.-.-
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK---qRGS~~g~TGVhD~VVNQLLsKmDGVeqL- 367 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK---QRGSMAGSTGVHDTVVNQLLSKMDGVEQL- 367 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH---hcCCCCCCCCccHHHHHHHHHhcccHHhh-
Confidence 43 57889999997663 236999999999874 44444445667778999999999998654
Q ss_pred CCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 340 GDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 340 ~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.+++||+-||++|.||+||+||||+.++++++.|++..|.+|++.+-.
T Consensus 368 -NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~ 415 (744)
T KOG0741|consen 368 -NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTK 415 (744)
T ss_pred -hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhh
Confidence 679999999999999999999999999999999999999998886654
No 39
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.7e-23 Score=215.59 Aligned_cols=182 Identities=25% Similarity=0.354 Sum_probs=159.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
++.+ ++++|....-..+.+.+...+..+..|...|.++|+|+|+|||||||||.+++|+|++.+..++.++..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5666 78889899999999999999999999999999999999999999999999999999999999999998865
Q ss_pred --CChHHHHHHHHhhC--C-ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 --RSNSDLRRLLVSTG--N-RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 --~~~~~l~~ll~~~~--~-~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
++++.+++.|..+. + |+||||||+|.+.+.+... .....++.++|+..|||+... .++||+++||+|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~------~~~e~Rv~sqlltL~dg~~~~--~~vivl~atnrp 330 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA------DDVESRVVSQLLTLLDGLKPD--AKVIVLAATNRP 330 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc------chHHHHHHHHHHHHHhhCcCc--CcEEEEEecCCc
Confidence 46788999997764 4 9999999999997622111 113567889999999999744 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS 393 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~ 393 (455)
+.|||+++| ||||..++++.|+..+|.++++.+.....+.
T Consensus 331 ~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~ 370 (693)
T KOG0730|consen 331 DSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL 370 (693)
T ss_pred cccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc
Confidence 999999999 9999999999999999999999998876554
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=7.3e-20 Score=158.89 Aligned_cols=123 Identities=33% Similarity=0.525 Sum_probs=99.6
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC------ChHHHHHHHHhh--CC-ceEEEEecccchhhhhhhcCCC
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR------SNSDLRRLLVST--GN-RSILVIEDIDCSIELENRQCGG 314 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~------~~~~l~~ll~~~--~~-~~IL~iDEiD~l~~~~~~~~~~ 314 (455)
+||+||||||||++|+++|+.++.+++.+++..+. ....+...+... .. ++||+|||+|.+.... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-----~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-----Q 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-----S
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-----c
Confidence 69999999999999999999999999999998764 345667777654 34 8999999999997632 1
Q ss_pred CCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCC
Q 047029 315 GYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 315 ~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~ 373 (455)
..........+..|++.++..... ..+++||+|||.++.++++++| |||+.+|+++.
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 112344566788899999988654 3468999999999999999998 89999999874
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=1.2e-18 Score=163.82 Aligned_cols=175 Identities=19% Similarity=0.209 Sum_probs=119.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|++++|++++++.+.-.+.....+. ..-..+|||||||+||||||..+|++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 358899999999999988655544332221 123479999999999999999999999999999888778888
Q ss_pred HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc-----cCC---------CceEEE
Q 047029 281 SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS-----SCG---------DERIIV 346 (455)
Q Consensus 281 ~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-----~~~---------~~~ivI 346 (455)
.++..++.....+.|||||||+.+-. .....|+..|+...- ..+ ....+|
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk----------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNK----------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--H----------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhccH----------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 99999999888999999999998732 333446666653221 111 224688
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHh
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEEL 401 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~l 401 (455)
++|+....|.++|+. ||.+..++.+.+.++..+++++........+.++....
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~ 206 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEE 206 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHH
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 899999999999999 99999999999999999999988777666665544333
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.9e-19 Score=171.91 Aligned_cols=179 Identities=22% Similarity=0.304 Sum_probs=137.4
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhh-cCCCCceeEEECCCCCChHHHHHHHHHHcC---------CcEEEEec
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLK---------FDIYDMEL 274 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGTGKTsla~alA~~l~---------~~v~~l~~ 274 (455)
-|+.|+.+.++|++++......+.-.+.-... =+.|.|-+|||||||||||+|++|+|+.|. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 37888999999999998776555443322222 267889999999999999999999999983 34566666
Q ss_pred ccc------CChHHHHHHHHhhC-------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 275 ASL------RSNSDLRRLLVSTG-------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 275 ~~~------~~~~~l~~ll~~~~-------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
.++ ++...+.++|.+.. .-..++|||++.+...+.. ..++....+.-+.++.+|..||.+... .
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s-~~S~~EpsDaIRvVNalLTQlDrlK~~--~ 296 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTS-ASSRNEPSDAIRVVNALLTQLDRLKRY--P 296 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHh-hhcCCCCchHHHHHHHHHHHHHHhccC--C
Confidence 655 34455666665542 2346789999998764322 222223445668899999999999665 7
Q ss_pred ceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 342 ERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 342 ~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
++++.+|+|-.+.||.|+.. |-|.+.++++|+.+++..|++..+.
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 89999999999999999999 9999999999999999999987764
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.7e-19 Score=175.19 Aligned_cols=216 Identities=19% Similarity=0.196 Sum_probs=154.5
Q ss_pred cchhHHHHHhhhhHHHHHHHHHHhccceEEEeec---------CcccccccCCCCCCcccccCHHHHHHHHHHHHHHHHh
Q 047029 159 KLFKDKVLNKYLPYVAERSKAIKETKKVIKLYSL---------CAADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKR 229 (455)
Q Consensus 159 ~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~---------~~w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~ 229 (455)
.+.-..|..+|+..++.....+++..+....+.. ..-....-.....|+.+++.+.+++.|.+....--+.
T Consensus 298 tkeg~~V~w~yi~r~LGqPSLiREsSrg~~pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNT 377 (630)
T KOG0742|consen 298 TKEGTLVTWRYIERRLGQPSLIRESSRGRFPWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANT 377 (630)
T ss_pred ccccchhHHHHHHHHcCCchhhhhhccccCCCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhccc
Confidence 3455678999999999988888887764422211 0001111123345999999999999987655432222
Q ss_pred HHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-----ChHHHHHHHHhh---CCceEEEEecc
Q 047029 230 REFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-----SNSDLRRLLVST---GNRSILVIEDI 301 (455)
Q Consensus 230 ~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-----~~~~l~~ll~~~---~~~~IL~iDEi 301 (455)
+....+=|++|||||||||||++|+-+|...|+++-.+...++. .-..+.++|.-. .++-+|||||.
T Consensus 378 -----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEA 452 (630)
T KOG0742|consen 378 -----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEA 452 (630)
T ss_pred -----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhh
Confidence 22445568999999999999999999999999998888777763 235677777433 34679999999
Q ss_pred cchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHH
Q 047029 302 DCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKI 381 (455)
Q Consensus 302 D~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~ 381 (455)
|+++..++. .. ........++.||-. .|-.+ ..++++.+||+|+.+|.|+-. |+|..|+||.|..++|..
T Consensus 453 DAFLceRnk--ty--mSEaqRsaLNAlLfR-TGdqS---rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfk 522 (630)
T KOG0742|consen 453 DAFLCERNK--TY--MSEAQRSALNALLFR-TGDQS---RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFK 522 (630)
T ss_pred HHHHHHhch--hh--hcHHHHHHHHHHHHH-hcccc---cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHH
Confidence 998753222 11 122334455555533 23333 568899999999999999999 999999999999999999
Q ss_pred HHHHhhcc
Q 047029 382 LAFNYLKI 389 (455)
Q Consensus 382 L~~~~l~~ 389 (455)
|+..||+.
T Consensus 523 ll~lYlnk 530 (630)
T KOG0742|consen 523 LLNLYLNK 530 (630)
T ss_pred HHHHHHHH
Confidence 99999874
No 44
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.76 E-value=9.1e-18 Score=159.84 Aligned_cols=185 Identities=20% Similarity=0.280 Sum_probs=152.3
Q ss_pred CcccccccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcE
Q 047029 193 CAADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDI 269 (455)
Q Consensus 193 ~~w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v 269 (455)
+...++....|..+++|+|.+.+|+.|++....|+.+. +..++||||++|||||++++|+.+++ |+.+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 34567777888899999999999999999999999753 36799999999999999999999987 7889
Q ss_pred EEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc
Q 047029 270 YDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT 349 (455)
Q Consensus 270 ~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT 349 (455)
+.+.-.++..-..+...+...+.+.|||+||+.. .........|...|||-....+++++|.+|+
T Consensus 84 Iev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsF---------------e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 84 IEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSF---------------EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred EEECHHHhccHHHHHHHHhcCCCCEEEEecCCCC---------------CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 9999888888888888888888899999999763 2334557889999999988889999999999
Q ss_pred CCCCCCCcccc----------C-----------CCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch-HHHHHh
Q 047029 350 NYKERLDPALL----------R-----------PGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF-DEIEEL 401 (455)
Q Consensus 350 N~~~~Ld~all----------R-----------pGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~-~ei~~l 401 (455)
|+...+.+... . ..||...|.|..|+.++..+|+++++...+..+. +++...
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~ 222 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQE 222 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 97543332211 1 1399999999999999999999999987766665 344433
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=2e-17 Score=162.02 Aligned_cols=181 Identities=16% Similarity=0.214 Sum_probs=126.4
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCC---ceeEEECCCCCChHHHHHHHHHHc-------CCcEEEEecc
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYL-------KFDIYDMELA 275 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGTGKTsla~alA~~l-------~~~v~~l~~~ 275 (455)
+++++|.+++|++|.+.+..... .....+.|...+ .++|||||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQI-NEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 57899999999999887754433 344455666533 468999999999999999999976 2356666665
Q ss_pred ccC------ChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc
Q 047029 276 SLR------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT 349 (455)
Q Consensus 276 ~~~------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT 349 (455)
.+. ....++++|... .++||||||+|.+.. ..........+..|+..|+... .+.++|+++
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--------~~~~~~~~~~i~~Ll~~~e~~~----~~~~vila~ 150 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--------GGEKDFGKEAIDTLVKGMEDNR----NEFVLILAG 150 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--------CCccchHHHHHHHHHHHHhccC----CCEEEEecC
Confidence 542 234556666554 468999999998742 0011122345667888877642 345666665
Q ss_pred CCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 350 NYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 350 N~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
+..+ .++|++.+ ||+.+|+|+.++.+++.+++++++......+.++....+
T Consensus 151 ~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred CcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 4332 37899999 999999999999999999999999876555555544443
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=2.3e-17 Score=166.77 Aligned_cols=170 Identities=20% Similarity=0.226 Sum_probs=130.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChH
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNS 281 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~ 281 (455)
.|.+|++++|.++.++.+...+...... ..+++++|||||||||||++|+++|++++.++...+...+....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~ 91 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG 91 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH
Confidence 4789999999999999887776543221 23356899999999999999999999999998887776666777
Q ss_pred HHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-----cc---------CCCceEEEE
Q 047029 282 DLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-----SS---------CGDERIIVF 347 (455)
Q Consensus 282 ~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-----~~---------~~~~~ivI~ 347 (455)
.+..++.....++||||||||.+.. . ....+.+.|+... .. ......+|+
T Consensus 92 ~l~~~l~~l~~~~vl~IDEi~~l~~-------------~---~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~ 155 (328)
T PRK00080 92 DLAAILTNLEEGDVLFIDEIHRLSP-------------V---VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIG 155 (328)
T ss_pred HHHHHHHhcccCCEEEEecHhhcch-------------H---HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEe
Confidence 8888888888899999999998742 0 1111333333211 00 012367889
Q ss_pred EcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 348 TTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 348 TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
+||++..++++|++ ||...+++++++.+++.+++++..+.....+.++
T Consensus 156 at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~ 203 (328)
T PRK00080 156 ATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEE 203 (328)
T ss_pred ecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHH
Confidence 99999999999998 9999999999999999999999887765555544
No 47
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=4.5e-17 Score=161.45 Aligned_cols=176 Identities=16% Similarity=0.243 Sum_probs=127.1
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCc---eeEEECCCCCChHHHHHHHHHHcC-------CcEEEEeccc
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKR---GYLLYGPPGTGKSSLIAAMANYLK-------FDIYDMELAS 276 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~r---g~LL~GPpGTGKTsla~alA~~l~-------~~v~~l~~~~ 276 (455)
++++|.+++|++|.+.+. ++..+..+++.|...++ ++||+||||||||++|+++|+.+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~-~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAA-LLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999988765 45556777788876543 489999999999999999999862 2477777554
Q ss_pred cC------ChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC
Q 047029 277 LR------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN 350 (455)
Q Consensus 277 ~~------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN 350 (455)
+. +......++... .++||||||+|.+.. .+. ...........|+..|+... .+++||++++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~--~~~-----~~~~~~e~~~~L~~~me~~~----~~~~vI~ag~ 169 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYK--PDN-----ERDYGSEAIEILLQVMENQR----DDLVVIFAGY 169 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhcc--CCC-----ccchHHHHHHHHHHHHhcCC----CCEEEEEeCC
Confidence 31 223445555554 468999999998753 110 11223456677888887532 4567777765
Q ss_pred CCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 351 YKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 351 ~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.++
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 322 34699999 9999999999999999999999998765555443
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.73 E-value=4.5e-17 Score=162.63 Aligned_cols=168 Identities=18% Similarity=0.183 Sum_probs=126.3
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDL 283 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l 283 (455)
.+|++++|.++++++|...+......+ ..+++++||||||||||++++++|++++.++.............+
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l 72 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDL 72 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhH
Confidence 378999999999998887775433221 234579999999999999999999999998877776655566677
Q ss_pred HHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc--------------ccCCCceEEEEEc
Q 047029 284 RRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW--------------SSCGDERIIVFTT 349 (455)
Q Consensus 284 ~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--------------~~~~~~~ivI~TT 349 (455)
...+.....+.|||||||+.+.+ .....|++.|+... .......++|++|
T Consensus 73 ~~~l~~~~~~~vl~iDEi~~l~~----------------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 73 AAILTNLEEGDVLFIDEIHRLSP----------------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHHHhcccCCEEEEehHhhhCH----------------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 77777777889999999998743 11122343333211 0011237888999
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
|++..+++++++ ||...++++.++.++..++++...+.....+.++
T Consensus 137 ~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~ 182 (305)
T TIGR00635 137 TRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPE 182 (305)
T ss_pred CCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999 9999999999999999999998887554444443
No 49
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=6.4e-17 Score=160.26 Aligned_cols=176 Identities=16% Similarity=0.214 Sum_probs=128.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC---CceeEEECCCCCChHHHHHHHHHHcC-------CcEEEEecccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW---KRGYLLYGPPGTGKSSLIAAMANYLK-------FDIYDMELASL 277 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~rg~LL~GPpGTGKTsla~alA~~l~-------~~v~~l~~~~~ 277 (455)
.++|.+++|++|.+.+.. +..++.+.+.|... ..++||+||||||||++|+++|+.+. .+++.+++..+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999886664 66777788888764 34899999999999999999999873 25777776544
Q ss_pred C------ChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 278 R------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 278 ~------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
. +...+..+|..+ .++||||||++.+... + ............|++.|+.. ..+++||++++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~--~-----~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~ 169 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRP--D-----NERDYGQEAIEILLQVMENQ----RDDLVVILAGYK 169 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccC--C-----CccchHHHHHHHHHHHHhcC----CCCEEEEEeCCc
Confidence 1 234455566554 4689999999987420 0 01122345567788888753 245777777654
Q ss_pred C--C---CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 352 K--E---RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 352 ~--~---~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
. + .++|+|.+ ||+.+|+|+.++.+++..|+++++......+.++.
T Consensus 170 ~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 170 DRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred HHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 2 2 25899999 99999999999999999999999987654444443
No 50
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.70 E-value=2.7e-16 Score=150.99 Aligned_cols=184 Identities=20% Similarity=0.215 Sum_probs=141.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|++.+|++++|+++.=.++..-.+. ...-.+|||||||.||||||..+|+++|..+-......+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 358999999999999988766555433322 224479999999999999999999999999999998899999
Q ss_pred HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc--------cccC------CCceEEE
Q 047029 281 SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL--------WSSC------GDERIIV 346 (455)
Q Consensus 281 ~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--------~~~~------~~~~ivI 346 (455)
.++..+|.......|||||||+.+.+ ..-.-|.-.|+.+ -.+. -...-+|
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~----------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSP----------------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcCh----------------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 99999999999999999999999853 1111222333311 1110 0234588
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH-HHHHhhccccCchh
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD-EIEELIKEVEVTPA 410 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~-ei~~ll~~~~~tpa 410 (455)
++|-+...|...|+. ||.+..++.+.+.++...++.+.-...+..+.+ .+.++.....-||-
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 899999999999999 999999999999999999999988776655543 44455556666776
No 51
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=6.3e-16 Score=164.04 Aligned_cols=167 Identities=22% Similarity=0.351 Sum_probs=126.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
..|.+|++++|++++++.+.+.+..+.. |. +++++|||||||||||++|+++|++++++++.++.++..+.
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~ 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH
Confidence 5689999999999999999998876653 22 26799999999999999999999999999999999887666
Q ss_pred HHHHHHHHhh--------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 281 SDLRRLLVST--------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 281 ~~l~~ll~~~--------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
..+..++... ..+.||+|||+|.+.. ......+..|++.++. ....+|+++|.+
T Consensus 79 ~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~------------~~d~~~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 79 DVIERVAGEAATSGSLFGARRKLILLDEVDGIHG------------NEDRGGARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred HHHHHHHHHhhccCcccCCCCeEEEEecCccccc------------ccchhHHHHHHHHHHc------CCCCEEEeccCc
Confidence 6666554332 2468999999998742 1112234566666653 224577788988
Q ss_pred CCCCc-cccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 353 ERLDP-ALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 353 ~~Ld~-allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
..+++ .+.+ |+ ..|+|+.|+.++...+++..+...+..+.++
T Consensus 141 ~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e 183 (482)
T PRK04195 141 YDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDE 183 (482)
T ss_pred cccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 88887 4554 44 6799999999999999998887665554443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=9.8e-16 Score=165.32 Aligned_cols=160 Identities=19% Similarity=0.311 Sum_probs=123.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++|+|++.+++.|.+.+. +...+..|||+||+|||||++++++|+.+++
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALD------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHh------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 58999999999999988877664 1223567999999999999999999999864
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++..+-.+..++++++... ....|+||||+|.+.. ...+.||..
T Consensus 79 Cr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----------------~A~NALLKt 142 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----------------HAFNAMLKT 142 (830)
T ss_pred HHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----------------HHHHHHHHH
Confidence 45556554434455677776543 2457999999998732 345677777
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
|+.- ..+++||++||.+.+|.+.|++ || .++.|..++.++....+++.++.++..+.+
T Consensus 143 LEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~ 200 (830)
T PRK07003 143 LEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEP 200 (830)
T ss_pred HHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCH
Confidence 7653 2468899999999999999999 98 789999999999999998888766544443
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.68 E-value=4.6e-16 Score=155.75 Aligned_cols=152 Identities=26% Similarity=0.360 Sum_probs=111.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChH
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNS 281 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~ 281 (455)
.|.++++++|++++..+ ...|...+.. ..-..++|||||||||||+|+.||+..+.+|..++... .+..
T Consensus 19 RP~~lde~vGQ~HLlg~-~~~lrr~v~~---------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGE-GKPLRRAVEA---------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCC-CchHHHHHhc---------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHH
Confidence 48999999999887422 1111111221 11347999999999999999999999999999988654 3557
Q ss_pred HHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc--CCCC
Q 047029 282 DLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT--NYKE 353 (455)
Q Consensus 282 ~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT--N~~~ 353 (455)
++++++... .++.|||||||+.+-. .....||-.++. +.+++|++| |+--
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----------------~QQD~lLp~vE~------G~iilIGATTENPsF 145 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRFNK----------------AQQDALLPHVEN------GTIILIGATTENPSF 145 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhcCh----------------hhhhhhhhhhcC------CeEEEEeccCCCCCe
Confidence 788888655 2478999999998721 223446666653 446777644 6667
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.|.+||++ |. ....+...+.++.++++++-+..
T Consensus 146 ~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 146 ELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred eecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhh
Confidence 89999999 87 56889999999999999985543
No 54
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.4e-15 Score=160.01 Aligned_cols=161 Identities=19% Similarity=0.355 Sum_probs=119.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++++++.|...+. . ...+.++|||||||||||++|+++|+.++.
T Consensus 8 yRP~~~~divGq~~i~~~L~~~i~----~--------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 8 YRPKTFSEVVGQDHVKKLIINALK----K--------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHH----c--------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 468999999999998777665443 2 123567999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.+.-.+-..++++.... ....|++|||+|.+.. ..+..|+.
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------------~a~~~LLk 139 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------------EAFNALLK 139 (472)
T ss_pred HHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH----------------HHHHHHHH
Confidence 56777665444455666655332 2457999999998732 23566788
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
.++.. ++.+++|++|+.+..+++++.+ |+. .++|..++.++...+++..+...+..+.+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 77753 2457777777778899999999 884 79999999999888888877655444433
No 55
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=6.6e-16 Score=172.36 Aligned_cols=158 Identities=25% Similarity=0.261 Sum_probs=114.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--------
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS-------- 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~-------- 279 (455)
++.|.+++|+.|.+.+...... +...+..+||+||||||||++|+++|+.++.+++.++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4778889999888866533222 2223347999999999999999999999999999987765422
Q ss_pred -------hHHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc----cccC-------C
Q 047029 280 -------NSDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL----WSSC-------G 340 (455)
Q Consensus 280 -------~~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~----~~~~-------~ 340 (455)
...+.+.|.... ...||+|||||.+.. + ......+.|++.+|.. .... .
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~--~----------~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS--S----------FRGDPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCCEEEEechhhcCC--c----------cCCCHHHHHHHhcCHHhcCccccccCCceecc
Confidence 234455554432 445999999999853 0 0111245566666631 1100 1
Q ss_pred CceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 341 DERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 341 ~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
.++++|+|||..+.++++|++ ||+ .|+|+.++.+++.+|+++|+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 468899999999999999999 996 68999999999999999987
No 56
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.1e-15 Score=159.37 Aligned_cols=163 Identities=18% Similarity=0.322 Sum_probs=121.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++.+.+.|...+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 3589999999999998887776641 1 12456999999999999999999999975
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++...-.+...++++.... ....|+||||+|.+.. ...+.||.
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~----------------~A~NALLK 143 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD----------------QSFNALLK 143 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH----------------HHHHHHHH
Confidence 35555543333344555554332 2457999999998732 35677787
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
.|+. .+..+++|++|+.++.|.+++++ |+ .++.|..++.++....+++.+..++....++.
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eA 204 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEG 204 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7764 23578889999999999999999 98 57999999999988888888776655444443
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.1e-15 Score=162.90 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=125.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-+|.+|++|+|++.+++.|.+.+.. ...+..|||+||+|||||++++++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 3589999999999999988877652 123568999999999999999999999976
Q ss_pred ----------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhH
Q 047029 268 ----------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTL 325 (455)
Q Consensus 268 ----------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l 325 (455)
+++.++..+-.+-.++++++... .+..|+||||+|.+-. ...
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----------------~Aa 141 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----------------HAF 141 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------------HHH
Confidence 45556555434456677776543 2457999999998732 346
Q ss_pred hhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 326 SGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 326 s~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
+.||..|+.- ++++++|++||.+.+|.+.+++ |+ .++.|..++.++..+.+++.+..++....++
T Consensus 142 NALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~e 206 (700)
T PRK12323 142 NAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVN 206 (700)
T ss_pred HHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHH
Confidence 6788877652 3568899999999999999999 88 7899999999999998888887665544433
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.2e-15 Score=161.09 Aligned_cols=160 Identities=19% Similarity=0.304 Sum_probs=123.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++.+++.|.+.+. ....+..|||+||||||||++|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~------------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALE------------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 358999999999999888877765 1223568999999999999999999999865
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.++-.+-..+++++... .+..|++|||+|.+-. ...+.|+.
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----------------~A~NALLK 140 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----------------HSFNALLK 140 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----------------HHHHHHHH
Confidence 56666666544556777776543 2457999999998732 34567777
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
.++.. ++.+.+|++|+.+..+.+.+++ |+ .+++|..++.++....+++.+..++....
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id 198 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAAD 198 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 77653 3457788888888889999887 88 68999999999999888888876654443
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=6e-15 Score=151.17 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=118.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.+.+.+.. | ..+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 478999999999999887765541 1 23567999999999999999999999853
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++.++-..-..+++++... ....|++|||+|.+.. ...+.||..
T Consensus 79 c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~----------------~a~naLLk~ 142 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR----------------HSFNALLKT 142 (363)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH----------------HHHHHHHHH
Confidence 34444443323345566665443 2356999999998732 334567777
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
++.. ++...+|++|+.++.+.+++.. |+ ..++++.++.++....+...+...+....++.
T Consensus 143 lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~a 202 (363)
T PRK14961 143 LEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYA 202 (363)
T ss_pred HhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 7653 2456778888888899999988 87 67999999999999888887776654444433
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=1.3e-14 Score=153.51 Aligned_cols=161 Identities=22% Similarity=0.296 Sum_probs=122.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|++.+.+.+...+.. ...+.++||+||||||||++|+++|+.+++
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 4689999999999998877665431 123568999999999999999999999854
Q ss_pred ---------------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHh
Q 047029 268 ---------------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLS 326 (455)
Q Consensus 268 ---------------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls 326 (455)
+++.++..+-.+-.+++.++.... ...|++|||+|.+.. ..++
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------------~a~n 146 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------------GAFN 146 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH----------------HHHH
Confidence 344455444345567777775542 467999999998732 3466
Q ss_pred hhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 327 GLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 327 ~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
.|+..++.- +...++|++|+.++++.+++.+ |+ ..++|..++.++....++..+..++....+
T Consensus 147 aLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~ 209 (507)
T PRK06645 147 ALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDI 209 (507)
T ss_pred HHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 777777642 3567888888888999999998 88 579999999999999999888766544443
No 61
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=8.6e-15 Score=147.48 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=114.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~ 275 (455)
..|.+|++++|++++.+.|...+. . +. ..++|||||||||||++|.++|+++. ..++.++.+
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s 73 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIAR----D-------GN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS 73 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHh----c-------CC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc
Confidence 478999999999988877655432 2 11 23699999999999999999999982 235566666
Q ss_pred ccCChHHHHHHHHh---h------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 276 SLRSNSDLRRLLVS---T------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 276 ~~~~~~~l~~ll~~---~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
+..+...++..+.. . ....|++|||+|.+.. ...+.|+..|+... ....+|
T Consensus 74 d~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----------------~aq~aL~~~lE~~~----~~t~~i 133 (319)
T PLN03025 74 DDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS----------------GAQQALRRTMEIYS----NTTRFA 133 (319)
T ss_pred ccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH----------------HHHHHHHHHHhccc----CCceEE
Confidence 55444455554422 1 2367999999998743 22345666665431 335678
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
++||....+.++|.+ |+ ..++|+.|+.++....++..+..++..+.+
T Consensus 134 l~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~ 180 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVP 180 (319)
T ss_pred EEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 899999999999998 77 579999999999988888887766544433
No 62
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.62 E-value=1e-14 Score=137.13 Aligned_cols=177 Identities=19% Similarity=0.250 Sum_probs=148.2
Q ss_pred cccccccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEE
Q 047029 194 AADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIY 270 (455)
Q Consensus 194 ~w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~ 270 (455)
...+++-.+|..+.+|+|.+.+|+.+.+....|+.+. +.+++||||..|||||+|++|+-+++ +..++
T Consensus 47 ~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 47 YLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred cccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 4456777778899999999999999999999998753 26789999999999999999999988 67899
Q ss_pred EEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC
Q 047029 271 DMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN 350 (455)
Q Consensus 271 ~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN 350 (455)
.++-.++..-..+...+...+.+.|||+||+.. .........|-..+||-....+.+++|.+|+|
T Consensus 118 EV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSF---------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 118 EVDKEDLATLPDLVELLRARPEKFILFCDDLSF---------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred EEcHHHHhhHHHHHHHHhcCCceEEEEecCCCC---------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 999888888888999999999999999999863 22345677888999999998899999999999
Q ss_pred CCCCCCcccc--------------------CCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 351 YKERLDPALL--------------------RPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 351 ~~~~Ld~all--------------------RpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+...|++-.. =..||...+.|..|+.++..+++.+|....+...
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 7655442211 1249999999999999999999999987665554
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.3e-14 Score=152.47 Aligned_cols=161 Identities=17% Similarity=0.273 Sum_probs=125.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK--------------- 266 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~--------------- 266 (455)
.|.+|++++|++.+++.+.+.+.. | ..+.++||+|||||||||+|+++|+.++
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 589999999999988877665431 2 2367899999999999999999999763
Q ss_pred ---------CcEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 267 ---------FDIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 267 ---------~~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
.+++.++.++-.+-.+++.++... ....|++|||+|.+.. ..++.||..
T Consensus 76 C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----------------~A~NaLLK~ 139 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----------------SAFNALLKT 139 (491)
T ss_pred HHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH----------------HHHHHHHHH
Confidence 467778777656667788877554 2467999999998732 356778888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
|+.- ++.+++|++|+.++++.+.++. |+ ..++|..++.++....+...+..++....++
T Consensus 140 LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e 198 (491)
T PRK14964 140 LEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE 198 (491)
T ss_pred HhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH
Confidence 8764 3567888888989999999998 88 5799999999999888888887665554443
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.8e-15 Score=155.19 Aligned_cols=158 Identities=21% Similarity=0.357 Sum_probs=121.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.|.+.+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 489999999999999988877642 122557999999999999999999999964
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++.++-.+-.++++++.... +..|++|||+|.+.. ...+.||..
T Consensus 79 C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~----------------~a~naLLk~ 142 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG----------------HSFNALLKT 142 (509)
T ss_pred HHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH----------------HHHHHHHHH
Confidence 266677655455667777775432 357999999998742 345678887
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
|+.. ++.+.+|++|+.+.++.+.+++ |+ ..++|..++.++....++..+..++...
T Consensus 143 LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~ 198 (509)
T PRK14958 143 LEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEF 198 (509)
T ss_pred Hhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 7754 3567788888888999999988 88 6789999999988877777776655443
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.7e-14 Score=155.78 Aligned_cols=159 Identities=21% Similarity=0.345 Sum_probs=121.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.|.+.+.. | ..+..|||+||+|||||++|+++|+.+++
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 589999999999999887766642 1 23557999999999999999999999965
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++..+-.+-.++++++... ....|++|||+|.+-. ...+.||..
T Consensus 79 C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~----------------~a~NALLKt 142 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR----------------HSFNALLKT 142 (647)
T ss_pred HHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH----------------HHHHHHHHH
Confidence 34555554323445667666443 2457999999998732 456778888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
|+.- ++.+++|++|+.+.+|.+.+++ |+ .+++|..++.++....+.+.+..++....
T Consensus 143 LEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e 199 (647)
T PRK07994 143 LEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFE 199 (647)
T ss_pred HHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 7753 3567788888889999999999 87 89999999999999888888765544333
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=3.1e-15 Score=166.15 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=115.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..+|.++|.++..+.+++.|. + ..+.+++|+||||||||++++++|+.+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~----~---------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC----R---------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh----c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 35678899998887777665553 1 226689999999999999999999987 778999
Q ss_pred EeccccCC--------hHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 272 MELASLRS--------NSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 272 l~~~~~~~--------~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
++++.+.. ...+++++.... .++||||||||.+....... .+ .....+-|+..+. .+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~------~~-~~~~~~~L~~~l~------~g 310 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS------GG-SMDASNLLKPALS------SG 310 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC------Cc-cHHHHHHHHHHHh------CC
Confidence 98776532 257788887653 47899999999987521110 00 1111222333332 15
Q ss_pred ceEEEEEcCCC-----CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 342 ERIIVFTTNYK-----ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 342 ~~ivI~TTN~~-----~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
++.+|++||.. -.+|+||.| ||. .|+++.|+.+++.+|++.....
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 68888888863 357999999 997 7999999999999999976653
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=99.61 E-value=2.2e-14 Score=137.87 Aligned_cols=176 Identities=15% Similarity=0.232 Sum_probs=111.9
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+....+.+||++++.+.. .....+.. . ........++||||||||||+|++|+|+++ +..+..+..
T Consensus 7 ~~~~~~~~fd~f~~~~~~--~~~~~~~~---~------~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 7 IHQIDDETLDNFYADNNL--LLLDSLRK---N------FIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCCCcccccccccCChH--HHHHHHHH---H------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 455677899999976542 12222211 1 111223468999999999999999999987 456666665
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCC
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKE 353 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~ 353 (455)
.... ....+.+....+..+|+||||+.+.. ...... .|++.++..... +..++|+|+| .|.
T Consensus 76 ~~~~--~~~~~~~~~~~~~dlLilDDi~~~~~-----------~~~~~~---~l~~l~n~~~~~--~~~illits~~~p~ 137 (229)
T PRK06893 76 SKSQ--YFSPAVLENLEQQDLVCLDDLQAVIG-----------NEEWEL---AIFDLFNRIKEQ--GKTLLLISADCSPH 137 (229)
T ss_pred HHhh--hhhHHHHhhcccCCEEEEeChhhhcC-----------ChHHHH---HHHHHHHHHHHc--CCcEEEEeCCCChH
Confidence 4321 12234455556778999999998642 111222 344444444332 3345566555 565
Q ss_pred CCC---ccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 RLD---PALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 ~Ld---~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.++ |.|.++.+.+..++++.|+.+++.+++++.....+..+.+++...+
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L 189 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFL 189 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 554 8899855556889999999999999999887665555555555444
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=2.1e-14 Score=157.66 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=117.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc-------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------- 268 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------- 268 (455)
.|.+|++|+|++.+++.|.+.+. . ...+..|||+||||||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~----~--------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALT----Q--------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH----h--------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 47899999999999988766554 1 1235678999999999999999999999653
Q ss_pred -----------EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 269 -----------IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 269 -----------v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
++.++..+..+-..++.+.... ....|+||||+|.+- ...++.||..
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT----------------~eAqNALLKt 142 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS----------------RSSFNALLKT 142 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC----------------HHHHHHHHHH
Confidence 2233333222334566665433 245799999999873 2456778888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
|+.- ++.+++|++|+.+.+|.+.++. |+ .+++|..++.++....+++.+..++....
T Consensus 143 LEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~e 199 (944)
T PRK14949 143 LEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFE 199 (944)
T ss_pred Hhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 7753 3457777888888899999998 88 78999999999999888888776544433
No 69
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.8e-14 Score=152.99 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=118.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHH----
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDL---- 283 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l---- 283 (455)
+-.|.+++|++|++.|.-.... +.-...-++|+||||+|||||++++|+.+|..|+.+.++.+.++.++
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4468889999999987632222 11222458899999999999999999999999999999988665444
Q ss_pred -----------HHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC-----------C
Q 047029 284 -----------RRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC-----------G 340 (455)
Q Consensus 284 -----------~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~-----------~ 340 (455)
.+.+..+. ..-+++|||||.+.. .....-.+.||+.+|--.... -
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s------------s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS------------SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccC------------CCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 33343333 456999999998843 111223466777666322111 1
Q ss_pred CceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 341 DERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 341 ~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.++++|+|.|..+.++.+|+. ||. .|+++-.+.++..+|+++||=
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 458999999999999999999 995 799999999999999999984
No 70
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.7e-14 Score=155.47 Aligned_cols=160 Identities=19% Similarity=0.322 Sum_probs=122.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++|+|++.+++.|.+.+.. ...+.+|||+||+|||||++|+++|+.+++
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 589999999999999988877652 233568999999999999999999998754
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++..+-.+...+++++... ....|+||||+|.+. ....+.||..
T Consensus 79 Cr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls----------------~~A~NALLKt 142 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS----------------KSAFNAMLKT 142 (709)
T ss_pred HHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC----------------HHHHHHHHHH
Confidence 34445544434455677776543 345799999999763 2345678888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
|+.. ++.+.+|++||.+.++.+.++. |+ ..+.|..++.++....++..+..++....+
T Consensus 143 LEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~ 200 (709)
T PRK08691 143 LEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEP 200 (709)
T ss_pred HHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCH
Confidence 7753 2457888899999999999887 88 689999999999998888888776554443
No 71
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.8e-14 Score=152.51 Aligned_cols=161 Identities=17% Similarity=0.298 Sum_probs=123.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK--------------- 266 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~--------------- 266 (455)
.|.+|++++|++.+++.+.+.+.. ...+..||||||+|||||++|+.+|+.++
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 489999999999999888777652 22356899999999999999999999884
Q ss_pred ---------CcEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 267 ---------FDIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 267 ---------~~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
.+++.++.++-.+-..++.+..... ...|++|||+|.+.. ...+.||..
T Consensus 79 C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~----------------~a~naLLKt 142 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST----------------GAFNALLKT 142 (559)
T ss_pred HHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----------------HHHHHHHHH
Confidence 3566666654445566777665432 457999999998732 346677877
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
++.. +..+++|++|+.++.+.+.+++ |+ ..++|..++.++....+...+...+....++
T Consensus 143 LEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~ 201 (559)
T PRK05563 143 LEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDE 201 (559)
T ss_pred hcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 7653 3567888888889999999998 88 4689999999998888888887665554443
No 72
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.60 E-value=1.3e-14 Score=145.70 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=111.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
..|.+|++++|++++++.+...+. . | ..+..+|||||||+|||++++++|++++.+++.++++. ...
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~ 81 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRI 81 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccH
Confidence 568999999999999888877664 1 2 23557777999999999999999999999999998887 222
Q ss_pred HHHHHHH----Hhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 281 SDLRRLL----VST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 281 ~~l~~ll----~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
..++..+ ... ..+.||+|||+|.+.. ......|...++... ....+|+|||.+.
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~---------------~~~~~~L~~~le~~~----~~~~~Ilt~n~~~ 142 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL---------------ADAQRHLRSFMEAYS----KNCSFIITANNKN 142 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC---------------HHHHHHHHHHHHhcC----CCceEEEEcCChh
Confidence 3333322 111 3578999999997621 112233444555432 4467889999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
.+++++++ ||. .+.++.|+.+++..+++.++
T Consensus 143 ~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 143 GIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99999999 884 78999999999887766543
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5.3e-14 Score=149.35 Aligned_cols=160 Identities=23% Similarity=0.375 Sum_probs=118.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++++++.|...+.. ...+..+|||||||||||++|+++|+.+.+
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 3588999999999998888776652 123456899999999999999999999853
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++.....+-..++.+.... ..+.|++|||+|.+. ...++.|+..
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls----------------~~a~naLLk~ 139 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS----------------KSAFNALLKT 139 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC----------------HHHHHHHHHH
Confidence 25555554333344555553322 346799999999752 2446778887
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
++.- +...++|++||.+..+.+++.+ |+. +++|..++.++....++..+...+....
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~ 196 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAE 196 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 7653 2457888889999999999998 874 7999999999999998888876654443
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.59 E-value=2.8e-14 Score=148.73 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=111.3
Q ss_pred CCCCCCcccccCHHHHHH---HHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 201 DHPSTFDTLAMDPVLKQA---LIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~---l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
-.|.+|++++|++++... +.+.+. .. ...+++|+||||||||++|+++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~----~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIE----AG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHH----cC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 357899999999887554 544442 21 13489999999999999999999999999999887643
Q ss_pred CChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc--
Q 047029 278 RSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT-- 349 (455)
Q Consensus 278 ~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT-- 349 (455)
+...++.++... ..+.||||||+|.+.. .....|+..++. +.+++|++|
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~----------------~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK----------------AQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH----------------HHHHHHHHHhhc------CcEEEEEeCCC
Confidence 344566665443 2578999999998732 223456666653 235566554
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
|....+++++++ |+ ..+.++.++.++...++++.+..
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 445689999999 88 67999999999999999987754
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.6e-14 Score=152.99 Aligned_cols=161 Identities=17% Similarity=0.302 Sum_probs=120.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.|.+.+.. ...+..|||+||+|||||++++++|+.+++
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 479999999999988877776541 122567999999999999999999999864
Q ss_pred ---------------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHh
Q 047029 268 ---------------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLS 326 (455)
Q Consensus 268 ---------------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls 326 (455)
+++.++..+-.+-.++++++.... +..|++|||+|.+.. ...+
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----------------~a~N 142 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----------------TAFN 142 (618)
T ss_pred CccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----------------HHHH
Confidence 344555443334456777775432 357999999998742 3456
Q ss_pred hhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 327 GLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 327 ~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
.||..++.- ++..++|++|+.+.++.+.++. |+ .+++|..++.++....++..+..++....++
T Consensus 143 aLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~ 206 (618)
T PRK14951 143 AMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQ 206 (618)
T ss_pred HHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 777776653 3567788888888889989888 87 7899999999998888888877665544433
No 76
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.9e-14 Score=151.36 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=121.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++.+++.|.+.+.. | ..+..||||||+|||||++|+++|+.+++
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 3589999999999998887776641 1 23457999999999999999999998863
Q ss_pred -------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhh
Q 047029 268 -------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGL 328 (455)
Q Consensus 268 -------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~L 328 (455)
+++.++.++..+-..++++.... ....|++|||+|.+-. ...+.|
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----------------~A~NAL 138 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----------------AGFNAL 138 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------------HHHHHH
Confidence 34455554433445565554322 3467999999998732 356778
Q ss_pred hhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 329 LNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 329 L~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
|..|+.. ++.+++|++|+.+++|.++++. |+ .+++|..++.++....+..++...+....++.
T Consensus 139 LK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~a 201 (584)
T PRK14952 139 LKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAV 201 (584)
T ss_pred HHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 8888753 3568888888888999999998 86 68999999999998888888877655454443
No 77
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.58 E-value=5.5e-14 Score=143.11 Aligned_cols=163 Identities=20% Similarity=0.341 Sum_probs=120.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|.+.+++.+.+.+.. | ..+..+|||||||+|||++++++|+.+..
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3578999999999999888776642 1 23568999999999999999999998742
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.....+...+++++.... .+.|++|||+|.+.. ...+.|+.
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----------------~~~~~Ll~ 139 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----------------SAFNALLK 139 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----------------HHHHHHHH
Confidence 344454443333445666665432 356999999997632 34566777
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
.++.. +...++|++||.++.+.+++.+ |+ ..++++.|+.++...++..++...+....++.
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a 200 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEA 200 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 77653 3457788888989989999998 87 57899999999999999988876655554443
No 78
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=4.8e-14 Score=156.74 Aligned_cols=160 Identities=21% Similarity=0.299 Sum_probs=119.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++|+|++.+++.|...+.. | ..+..||||||+|||||++|+++|+.|++
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 4689999999999999887776641 1 22457999999999999999999999963
Q ss_pred -------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhh
Q 047029 268 -------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGL 328 (455)
Q Consensus 268 -------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~L 328 (455)
+++.++..+..+-.+++++.... ....|+||||+|.+-. ...+.|
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----------------~a~NaL 140 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----------------QGFNAL 140 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----------------HHHHHH
Confidence 34445443333345555553221 3467999999998732 446678
Q ss_pred hhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 329 LNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 329 L~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
|..|+.. +...++|++|+.+++|-+.|+. |+ .+++|..++.++....+...+..++....
T Consensus 141 LK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id 200 (824)
T PRK07764 141 LKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVE 200 (824)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCC
Confidence 8888764 3567888888988999999998 87 68999999999998888888866554433
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.1e-14 Score=148.93 Aligned_cols=160 Identities=18% Similarity=0.309 Sum_probs=117.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.+...+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 478999999999999887766641 122557999999999999999999998864
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++...-.+..++++++... ....|++|||+|.+-. ...+.||..
T Consensus 79 C~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~----------------~a~naLLK~ 142 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK----------------QSFNALLKT 142 (546)
T ss_pred HHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH----------------HHHHHHHHH
Confidence 45555553333344555555433 2467999999998632 356678888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
|+.. ++.+++|++|+.+..+.++++. |+ ..++|..++.++....+...+..++....+
T Consensus 143 LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~ 200 (546)
T PRK14957 143 LEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDE 200 (546)
T ss_pred HhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 8753 3457777777778888888888 88 789999999999888888777655443333
No 80
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.2e-13 Score=141.80 Aligned_cols=161 Identities=20% Similarity=0.353 Sum_probs=116.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC------------c
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------D 268 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------~ 268 (455)
..|.+|++++|++.+++.+.+.+.. ...+.+||||||||+|||++++++|+.+.. +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4589999999999988877776652 133569999999999999999999998843 2
Q ss_pred EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCc
Q 047029 269 IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDE 342 (455)
Q Consensus 269 v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~ 342 (455)
++.++.....+...++.++... ..+.|++|||+|.+.. ..++.|+..++.. +..
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----------------~~~~~ll~~le~~----~~~ 138 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----------------AAFNAFLKTLEEP----PAH 138 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----------------HHHHHHHHHHhCC----CCc
Confidence 3334333333346677776543 2457999999997632 2356677777653 245
Q ss_pred eEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 343 RIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 343 ~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
.++|++|+.+..+.+++.+ |+ ..++++.|+.++....+...+...+..+.+
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~ 189 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFED 189 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCH
Confidence 6777888888999999988 76 368999999999888888777655544433
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.9e-14 Score=151.38 Aligned_cols=159 Identities=18% Similarity=0.340 Sum_probs=119.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.+.+.+.. ...+..|||+||||||||++|+++|+.+++
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 478999999999999888776652 123567999999999999999999999965
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++.+.-.+-..+++++... ....|++|||+|.+.. ...+.||..
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----------------~a~naLLK~ 142 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----------------SAFNAMLKT 142 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----------------HHHHHHHHH
Confidence 34555544333445677766543 2357999999998732 345678888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
++.. ++.+++|++|+.+..+.+.+++ |+ ..++|..++.++....+...+..++....
T Consensus 143 LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~ 199 (527)
T PRK14969 143 LEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFD 199 (527)
T ss_pred HhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 7763 3567788888888888888888 87 68999999999988888887765544433
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=6.2e-14 Score=149.73 Aligned_cols=160 Identities=16% Similarity=0.307 Sum_probs=119.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++.+++.+.+.+. ....+++|||+||||||||++|+++|+.+.+
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~------------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAIL------------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 358999999999999888877653 1123568999999999999999999999842
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++..+..+-..++.+.... ....|++|||+|.+-. ...+.|+.
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----------------~A~NaLLK 141 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----------------SAWNALLK 141 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----------------HHHHHHHH
Confidence 45555544333445666665433 2356999999998732 23467888
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
.|+.- ++..++|++|+.+..|.+++++ |+. .++|..++.++....+...+...+....
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is 199 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIE 199 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 77753 3467888888889999999998 874 7999999999988888887765544343
No 83
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.5e-14 Score=149.80 Aligned_cols=164 Identities=19% Similarity=0.282 Sum_probs=119.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------ 268 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------ 268 (455)
..|.+|++|+|++.+++.|.+.+.. | ..+..|||+||||||||++|+++|+.+.+.
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 4689999999999998877766541 1 224589999999999999999999999652
Q ss_pred ------------EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 269 ------------IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 269 ------------v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
++.++...-.+-..++.+.... ....||||||+|.+.. ...+.|+.
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~----------------~a~naLLk 141 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR----------------EAFNALLK 141 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH----------------HHHHHHHH
Confidence 5555543222334455443222 2467999999998732 34567888
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIE 399 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~ 399 (455)
.|+.- ....++|++||.+..+.+.+++ |+ .+|+|..++.++....+...+..++....++..
T Consensus 142 ~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 142 TLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred Hhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 87753 2457888999999999999888 87 478999999999988888877665544444433
No 84
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=2.5e-14 Score=160.48 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=110.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..++.++|.++..+++++.+. + ..+.+++|+||||||||++|+++|+.+ +.+++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~----r---------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILL----R---------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHh----c---------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 35678999998887666655443 1 225689999999999999999999987 356777
Q ss_pred EeccccCC--------hHHHHHHHHhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCC
Q 047029 272 MELASLRS--------NSDLRRLLVST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCG 340 (455)
Q Consensus 272 l~~~~~~~--------~~~l~~ll~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 340 (455)
++++.+.. ...+++++... ..+.|||||||+.+...++.. +. ...-+-|+..+. +
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-------~~-~d~~n~Lkp~l~----~-- 314 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-------GQ-GDAANLLKPALA----R-- 314 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-------cc-ccHHHHhhHHhh----C--
Confidence 87776531 25677777655 357899999999986521110 00 111112233322 2
Q ss_pred CceEEEEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 341 DERIIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 341 ~~~ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
+++.+|+||+..+ .+|+||.| ||. .|.++.|+.++...|++.+..
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 5688888888643 48999999 995 799999999999999765543
No 85
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=1e-13 Score=150.80 Aligned_cols=159 Identities=21% Similarity=0.331 Sum_probs=118.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------ 268 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------ 268 (455)
..|.+|++++|++.+++.+.+.+.. ...+..||||||||||||++|+++|+.+.+.
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 4689999999999999888777752 1336689999999999999999999988542
Q ss_pred ---------EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh
Q 047029 269 ---------IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD 333 (455)
Q Consensus 269 ---------v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 333 (455)
++.++..+-.+...++++.... ....|++|||+|.+.. ...+.||..|+
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----------------~A~NALLKtLE 143 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----------------SAFNALLKTLE 143 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----------------HHHHHHHHHhh
Confidence 2333332222345566665443 2457999999998732 34667888877
Q ss_pred cccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 334 GLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 334 g~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
.- ++.+++|++|+.++.|.+++++ |+ .+++|..++.++....+...+...+...
T Consensus 144 EP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~i 197 (725)
T PRK07133 144 EP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISY 197 (725)
T ss_pred cC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 53 3567888888899999999998 88 4899999999998888887766554433
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.56 E-value=2.5e-14 Score=138.75 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=115.5
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC------cEEEEe
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------DIYDME 273 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------~v~~l~ 273 (455)
--.|.+|++++|++.+.+.+.+.+.. .--..||||||||||||+.|.|+|.++.. .+..++
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 35689999999999999988887763 11347999999999999999999999965 333444
Q ss_pred ccccCChH-------HHHHHHHhh--------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 274 LASLRSNS-------DLRRLLVST--------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 274 ~~~~~~~~-------~l~~ll~~~--------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
.++-.+.+ ...++.... +...|++|||+|.+. +...+.|...||...
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----------------sdaq~aLrr~mE~~s-- 157 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT----------------SDAQAALRRTMEDFS-- 157 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh----------------HHHHHHHHHHHhccc--
Confidence 44432211 122222111 122799999999874 255677888888742
Q ss_pred CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 339 CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 339 ~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
....+|+.||+.+.|.+.+.. |+. ++.|+....+....-++.....++....+
T Consensus 158 --~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~ 210 (346)
T KOG0989|consen 158 --RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDD 210 (346)
T ss_pred --cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCH
Confidence 457899999999999999999 984 68888777766666666666666555544
No 87
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=5e-14 Score=138.06 Aligned_cols=158 Identities=22% Similarity=0.215 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHH----------
Q 047029 215 LKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLR---------- 284 (455)
Q Consensus 215 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~---------- 284 (455)
..+++++.+..++.. .+.+||+||||||||++|+++|+.+|.+++.+++..-....++.
T Consensus 6 ~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~ 74 (262)
T TIGR02640 6 AVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKK 74 (262)
T ss_pred HHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhh
Confidence 344555555555543 46899999999999999999999999999999876532211110
Q ss_pred -----------------------HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-cc--
Q 047029 285 -----------------------RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SS-- 338 (455)
Q Consensus 285 -----------------------~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~-- 338 (455)
.++.....+.+|+||||+.+-+ .+.+.|+..|+... .-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~----------------~~q~~Ll~~Le~~~~~i~~ 138 (262)
T TIGR02640 75 VHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKP----------------ETNNVLLSVFEEGVLELPG 138 (262)
T ss_pred HHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCH----------------HHHHHHHHHhcCCeEEccC
Confidence 1122234568999999998632 34556666665321 00
Q ss_pred ---------CCCceEEEEEcCCC-----CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 339 ---------CGDERIIVFTTNYK-----ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 339 ---------~~~~~ivI~TTN~~-----~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
...+..||+|+|.. ..++++|++ || ..+.+++|+.++..+|++...+.. ....+.+.+++.
T Consensus 139 ~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~-~~~~~~iv~~~~ 213 (262)
T TIGR02640 139 KRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDVA-EDSAATIVRLVR 213 (262)
T ss_pred CCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCCC-HHHHHHHHHHHH
Confidence 11245689999975 357899999 98 789999999999999998876432 223334444433
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=7.1e-14 Score=151.00 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=120.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++|+|++++++.|.+.+.. ...+..||||||+|||||++|+++|+.+++
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 478999999999999888876652 123668999999999999999999999853
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++..+..+-.+++.+.... ....|++|||+|.+.. ...+.||..
T Consensus 79 c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----------------~a~naLLk~ 142 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST----------------NAFNALLKT 142 (576)
T ss_pred HHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH----------------HHHHHHHHH
Confidence 24555544333445666665443 2357999999998732 346778888
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
|+.- ++.+++|++||.+++|.+.+++ |+ .+++|..++.++....+...+..++....+
T Consensus 143 LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~ 200 (576)
T PRK14965 143 LEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISD 200 (576)
T ss_pred HHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCH
Confidence 8753 3568888899999999999998 87 589999999999888888777666544433
No 89
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-13 Score=146.40 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=116.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh-------
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN------- 280 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~------- 280 (455)
+-.|..++|++|++.+.--. -.|-...+-+.|+||||+|||+++++||..||..|+.+.++.+.+.
T Consensus 412 DHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 45678899999999775211 1133334568899999999999999999999999999998876433
Q ss_pred --------HHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC-----------C
Q 047029 281 --------SDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC-----------G 340 (455)
Q Consensus 281 --------~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~-----------~ 340 (455)
..+.+.|.... ..-+++|||||.+.. +....--+.||+.+|--.... -
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~------------g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS------------GHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC------------CCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 45555555553 456899999999842 111122345555555221111 1
Q ss_pred CceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 341 DERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 341 ~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
..+++|+|.|..+.|+++|+. ||. .|+++-...++...|+++||-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 358999999999999999999 995 699999999999999999985
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=1.5e-13 Score=141.66 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=113.3
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc---------------
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--------------- 268 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~--------------- 268 (455)
..|++|+|++.+++.|.+.+..... .+...+...+.+|||+||||+|||++|+++|+.+.+.
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3589999999999998888764322 2344455567899999999999999999999987543
Q ss_pred --------EEEEeccc-cCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh
Q 047029 269 --------IYDMELAS-LRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD 333 (455)
Q Consensus 269 --------v~~l~~~~-~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 333 (455)
++.+.... ..+-.++++++.... ...|++|||+|.+-. ...+.||..|+
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------------~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------------RAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----------------HHHHHHHHHhh
Confidence 22232221 123456677765432 356999999998732 23466888876
Q ss_pred cccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 047029 334 GLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 334 g~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~ 385 (455)
.- +.+.++|++|+.++.|.|++++ |+ ..++|+.|+.++....+..
T Consensus 143 ep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 143 EP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred cC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 53 2456777777779999999999 88 6899999999998777653
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=3.6e-14 Score=159.58 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=112.6
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEE
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDM 272 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l 272 (455)
|..+|.++|.++..+.+++.|.. ..+.+++|+||||||||++|+++|..+ +.+++.+
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 56789999998876666665531 225689999999999999999999998 7889888
Q ss_pred eccccCC--------hHHHHHHHHhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 273 ELASLRS--------NSDLRRLLVST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 273 ~~~~~~~--------~~~l~~ll~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
+++.+.. ...++.+|... ..++|||||||+.+...+. +.+....... |...+ . .+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~-----~~~~~d~~~~---lkp~l----~--~g 306 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK-----ADGAMDAGNM---LKPAL----A--RG 306 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC-----CccchhHHHH---hcchh----h--cC
Confidence 8876521 23577777553 3578999999999965211 0011111111 22221 1 26
Q ss_pred ceEEEEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 342 ERIIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 342 ~~ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
++.+|++|+..+ .+|+|+.| ||+ .|.++.|+.+++..+++....
T Consensus 307 ~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 307 ELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 788999998776 48999999 997 589999999999998886654
No 92
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.54 E-value=1.4e-13 Score=131.22 Aligned_cols=173 Identities=16% Similarity=0.223 Sum_probs=109.7
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.++.+.+||+++. +..+.+++.+..++.. ..+++++|+||||||||++++++++++ +.+++.+++
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 6 VGLPDDPTFDNFYA--GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL 74 (226)
T ss_pred CCCCCchhhcCcCc--CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH
Confidence 34556678999883 2334455555544321 225689999999999999999999987 467888888
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCC
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKE 353 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~ 353 (455)
..+.. .....+.......+|+|||+|.+.. .. .....|...++..... + ..+|+|++ .+.
T Consensus 75 ~~~~~--~~~~~~~~~~~~~lLvIDdi~~l~~-------------~~-~~~~~L~~~l~~~~~~--~-~~iIits~~~~~ 135 (226)
T TIGR03420 75 AELAQ--ADPEVLEGLEQADLVCLDDVEAIAG-------------QP-EWQEALFHLYNRVREA--G-GRLLIAGRAAPA 135 (226)
T ss_pred HHHHH--hHHHHHhhcccCCEEEEeChhhhcC-------------Ch-HHHHHHHHHHHHHHHc--C-CeEEEECCCChH
Confidence 77642 2234444445567999999998732 10 1123444444443222 2 24555665 343
Q ss_pred CCC---ccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 RLD---PALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 ~Ld---~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.++ +.+.+ |+ ..+|.++.|+.+++..+++.+....+..+.++..+.+
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L 187 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYL 187 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 332 67776 55 5789999999999999998876544444444443333
No 93
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.2e-13 Score=144.06 Aligned_cols=162 Identities=19% Similarity=0.316 Sum_probs=118.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|++.+.+.+.+.+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4588999999999999888777641 223567999999999999999999999863
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.++-.+-..++.+.... ..+.|++|||+|.+.. ...+.|+.
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----------------~a~naLLk 141 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----------------EAFNALLK 141 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----------------HHHHHHHH
Confidence 34445443333334455554332 2467999999997632 23566777
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
.++.. +...++|++|+.++.+.+++.+ |+. .+.+..++.++....+...+...+....++
T Consensus 142 ~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~ 201 (486)
T PRK14953 142 TLEEP----PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEK 201 (486)
T ss_pred HHhcC----CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 77653 3456777778888889999988 774 799999999999988888877665444443
No 94
>PRK08727 hypothetical protein; Validated
Probab=99.54 E-value=2.7e-13 Score=130.70 Aligned_cols=172 Identities=18% Similarity=0.270 Sum_probs=110.7
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.++...+||+.++.+.- ....+..... | .+...++||||+|||||+|++|+|+++ +..+..+..
T Consensus 10 ~~~~~~~~f~~f~~~~~n---~~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~ 77 (233)
T PRK08727 10 LRYPSDQRFDSYIAAPDG---LLAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL 77 (233)
T ss_pred CCCCCcCChhhccCCcHH---HHHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH
Confidence 445566789998866542 1222221111 1 123569999999999999999998876 566667766
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCC
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKE 353 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~ 353 (455)
.... ..+.+.+....+..+|+|||++.+.. ....... +++.++..... +.-+|+|+| .|.
T Consensus 78 ~~~~--~~~~~~~~~l~~~dlLiIDDi~~l~~-----------~~~~~~~---lf~l~n~~~~~---~~~vI~ts~~~p~ 138 (233)
T PRK08727 78 QAAA--GRLRDALEALEGRSLVALDGLESIAG-----------QREDEVA---LFDFHNRARAA---GITLLYTARQMPD 138 (233)
T ss_pred HHhh--hhHHHHHHHHhcCCEEEEeCcccccC-----------ChHHHHH---HHHHHHHHHHc---CCeEEEECCCChh
Confidence 5532 34556666667778999999998742 1112233 33444333221 233566665 666
Q ss_pred CC---CccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 RL---DPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 ~L---d~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.+ +|+|.+ || ..+++++.|+.+++..+++......+..+.+++...+
T Consensus 139 ~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~L 190 (233)
T PRK08727 139 GLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWL 190 (233)
T ss_pred hhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 54 789998 86 5789999999999999999876555444555444443
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.3e-13 Score=143.20 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=120.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC--------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-------------- 266 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-------------- 266 (455)
-.|.+|++++|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 3589999999999999888777641 23466899999999999999999999873
Q ss_pred ----------CcEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 267 ----------FDIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 267 ----------~~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
.+++.++.++-.+-..++.+.... ....|++|||+|.+.. ...+.||.
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----------------~A~NALLK 139 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----------------EAFNALLK 139 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----------------HHHHHHHH
Confidence 235555544323446677776442 2357999999998732 45667888
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
.|+.. +....+|++|+.+.+|.++++. |+ .+++|..++.++....+...+..++....
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~ 197 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYE 197 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 87764 2456777888888999999999 86 68999999999988888877776654443
No 96
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3e-13 Score=142.08 Aligned_cols=160 Identities=19% Similarity=0.254 Sum_probs=115.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|++.+++.+.+.+.. ...+..||||||||+|||++|+++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 3579999999999998877776641 233568999999999999999999998843
Q ss_pred ------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 268 ------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 268 ------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
+++.++.....+-..++.+.... ..+.|++|||+|.+.. ...+.|+
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------------~~~n~LL 142 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------------EAFNSLL 142 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----------------HHHHHHH
Confidence 34444433222334454433222 3578999999998732 2356678
Q ss_pred hhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 330 NFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 330 ~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
..|+.- ++..++|++||.+..|.+++.+ |+ ..++|..++.++....+...+...+....
T Consensus 143 k~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~ 201 (451)
T PRK06305 143 KTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETS 201 (451)
T ss_pred HHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 877763 2457788888988999999998 88 46999999999988887777655443343
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.53 E-value=2.4e-13 Score=131.20 Aligned_cols=175 Identities=15% Similarity=0.230 Sum_probs=106.3
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.+++..+||+.+-. .-+..+..+..+...+ ..+.++||||||||||||++++|+++ +..+..+.+
T Consensus 13 ~~~~~~~~fd~f~~~--~n~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 13 LYLPDDETFASFYPG--DNDSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCCcCCccccccC--ccHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 345566789998743 1223444454433221 13589999999999999999999986 445666665
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
..... ...+++....+-.+|+||||+.+.. ....+.. |.+.++..... +...+++.+++.|..
T Consensus 82 ~~~~~--~~~~~~~~~~~~dlliiDdi~~~~~-----------~~~~~~~---lf~l~n~~~e~-g~~~li~ts~~~p~~ 144 (235)
T PRK08084 82 DKRAW--FVPEVLEGMEQLSLVCIDNIECIAG-----------DELWEMA---IFDLYNRILES-GRTRLLITGDRPPRQ 144 (235)
T ss_pred HHHhh--hhHHHHHHhhhCCEEEEeChhhhcC-----------CHHHHHH---HHHHHHHHHHc-CCCeEEEeCCCChHH
Confidence 54321 1223333333457999999998732 1122233 33334333322 112455545556555
Q ss_pred ---CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 355 ---LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 355 ---Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
+.|.|.+ |+. ..+++..|+.+++.++++......+..+.+++...+
T Consensus 145 l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L 195 (235)
T PRK08084 145 LNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFL 195 (235)
T ss_pred cCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5789999 875 889999999999999988755444444444444443
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.52 E-value=2e-13 Score=143.86 Aligned_cols=181 Identities=17% Similarity=0.252 Sum_probs=117.3
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEE
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDM 272 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l 272 (455)
..+++..+||+++..+.-+. ....+..+...+ |.. .++++||||||||||+|++|+|+++ +..++.+
T Consensus 113 ~~l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred cCCCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35677779999664332221 233333333322 222 3579999999999999999999998 5668888
Q ss_pred eccccCCh-------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEE
Q 047029 273 ELASLRSN-------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERII 345 (455)
Q Consensus 273 ~~~~~~~~-------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iv 345 (455)
++..+... .....+.....+..+|+||||+.+.. ...+...|+..++.+... +..+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--------------~~~~~~~l~~~~n~l~~~--~~~ii 248 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG--------------KERTQEEFFHTFNALHEA--GKQIV 248 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC--------------CHHHHHHHHHHHHHHHHC--CCcEE
Confidence 77654211 11222333445678999999998742 112334556666555443 22344
Q ss_pred EEEcCCCCC---CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 346 VFTTNYKER---LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 346 I~TTN~~~~---Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
|.++..|.. +++++.. ||. ..+++..|+.+++..+++..+...+..+.+++...+.+
T Consensus 249 its~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~ 310 (450)
T PRK00149 249 LTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAK 310 (450)
T ss_pred EECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHc
Confidence 444445544 7788888 885 68999999999999999999887666677776666654
No 99
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.9e-13 Score=141.74 Aligned_cols=160 Identities=16% Similarity=0.286 Sum_probs=114.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
-.|.+|++++|++.+++.|...+.. | ..+..||||||||||||++|+++|+.+.+
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3588999999999999887666541 1 23567999999999999999999999965
Q ss_pred -------------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcch
Q 047029 268 -------------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQ 322 (455)
Q Consensus 268 -------------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~ 322 (455)
+++.++.....+-.+++++.... ....|++|||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------------
Confidence 23333332222345566655444 2457999999998732
Q ss_pred hhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 323 VTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 323 ~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
...+.|+..++.. ++..++|++|+.+..+-+++.+ |+. .++|..++.++....+...+...+....
T Consensus 142 ~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~ 207 (397)
T PRK14955 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVD 207 (397)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2355677777643 2456777777778888889888 774 7999999999988888877765443333
No 100
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-13 Score=146.24 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=120.9
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC----CcEEEEeccccCC--h
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK----FDIYDMELASLRS--N 280 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~----~~v~~l~~~~~~~--~ 280 (455)
.+++-.+..|++..++...+ +..+.++||+||+|||||.|++++++++. +++..++|+.+.. -
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45555666666665533222 23356899999999999999999999984 4566788887743 3
Q ss_pred HHHHHHHH----hh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 281 SDLRRLLV----ST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 281 ~~l~~ll~----~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
..+++.+. .. ..|+||++||+|+++.. ....++..+.....+..++|.+-......+..+.+|+|.+....
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~---s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt 553 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA---SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT 553 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc---CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh
Confidence 34444443 22 47999999999999861 11111122333445556665554433333445688999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
|+|.|..|++|+.++.++.|...+|.+|+++.+...
T Consensus 554 l~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 554 LNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred cChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988654
No 101
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.52 E-value=4.8e-13 Score=135.05 Aligned_cols=159 Identities=14% Similarity=0.213 Sum_probs=106.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~ 275 (455)
..|.+|++++|.+++++.+.+.+. . +. ..++|||||||||||++|+++|+++. .++..+++.
T Consensus 9 y~P~~~~~~~g~~~~~~~L~~~~~----~-------~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 9 YRPALLEDILGQDEVVERLSRAVD----S-------PN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hCCCcHHHhcCCHHHHHHHHHHHh----C-------CC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 468899999999988877766553 1 11 23699999999999999999999984 245666665
Q ss_pred ccCC--------------------------hHHHHHHHHhh-------CCceEEEEecccchhhhhhhcCCCCCCCCcch
Q 047029 276 SLRS--------------------------NSDLRRLLVST-------GNRSILVIEDIDCSIELENRQCGGGYDENNSQ 322 (455)
Q Consensus 276 ~~~~--------------------------~~~l~~ll~~~-------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~ 322 (455)
.+.. ...++.++... ..+.+|+|||+|.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------- 139 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------- 139 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----------------
Confidence 4210 11222222111 2357999999997632
Q ss_pred hhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 323 VTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 323 ~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
.....|+..++... ....+|++|+.+..+.++|.+ |+ ..+++..|+.++...+++..+...+..+.
T Consensus 140 ~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (337)
T PRK12402 140 DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYD 205 (337)
T ss_pred HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 12334555555432 234466677777778888887 76 57999999999999999888766544443
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.52 E-value=2.7e-13 Score=140.97 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=113.2
Q ss_pred ccCCCCCCcccc-cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEE
Q 047029 199 NLDHPSTFDTLA-MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDM 272 (455)
Q Consensus 199 ~~~~p~tfd~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l 272 (455)
.+++..+||+.+ |.... .....+..+...+ |. ...+++||||||||||+|++|+|+++ +..++.+
T Consensus 102 ~l~~~~tfd~fi~g~~n~--~a~~~~~~~~~~~------~~-~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 102 PLNPKYTFDNFVVGKSNR--LAHAAALAVAENP------GK-AYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCCcccccccCCcHH--HHHHHHHHHHhCc------Cc-cCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 466677999954 43322 1223333333221 21 23579999999999999999999988 5678888
Q ss_pred eccccCCh-------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEE
Q 047029 273 ELASLRSN-------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERII 345 (455)
Q Consensus 273 ~~~~~~~~-------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iv 345 (455)
++..+... ...........+..+|+|||||.+.. ...+...|+..++.+... +..+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~--------------~~~~~~~l~~~~n~~~~~--~~~ii 236 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG--------------KERTQEEFFHTFNALHEN--GKQIV 236 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC--------------CHHHHHHHHHHHHHHHHC--CCCEE
Confidence 76653210 11112222334568999999998742 012233455555555432 23444
Q ss_pred EEEcCCCC---CCCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 346 VFTTNYKE---RLDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 346 I~TTN~~~---~Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
|.+++.|. .+++.+.+ ||. ..++++.|+.++|..+++..+...+..+.+++...+.
T Consensus 237 its~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia 297 (405)
T TIGR00362 237 LTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIA 297 (405)
T ss_pred EecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44444554 36688888 886 5899999999999999999998777667666665554
No 103
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=4.1e-13 Score=144.24 Aligned_cols=164 Identities=19% Similarity=0.300 Sum_probs=120.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------------- 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------------- 267 (455)
.|.+|++++|++.+++.+...+.. ...+..||||||||+|||++|+++|+.+++
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 589999999999999988777652 123567999999999999999999999864
Q ss_pred ----------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 268 ----------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 268 ----------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
+++.++...-.+-..++.+.... ....|++|||+|.+.. ...+.||..
T Consensus 79 C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----------------~a~naLLK~ 142 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----------------SAFNALLKT 142 (563)
T ss_pred HHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----------------HHHHHHHHh
Confidence 34444433222334566555322 3467999999998732 346678887
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHH
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEE 400 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ 400 (455)
++.. +...++|++|+.+.+|.++++. |+. .++|..++.++....++..+...+....++...
T Consensus 143 LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~ 204 (563)
T PRK06647 143 IEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALK 204 (563)
T ss_pred hccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7752 3567888888888999999998 884 689999999999888888776555444444333
No 104
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=5e-13 Score=144.58 Aligned_cols=160 Identities=16% Similarity=0.283 Sum_probs=116.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc-------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------- 268 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------- 268 (455)
.|.+|++++|++.+++.|.+.+. ....+.+|||+||||||||++|+++|+.+.+.
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~------------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLR------------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHH------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 58899999999999888766553 12335689999999999999999999999652
Q ss_pred -------------------EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchh
Q 047029 269 -------------------IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQV 323 (455)
Q Consensus 269 -------------------v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~ 323 (455)
+..++.....+..+++.+.... ....|++|||+|.+.. .
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----------------~ 142 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----------------A 142 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------------H
Confidence 2223322222345666665444 3467999999998732 2
Q ss_pred hHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 324 TLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 324 ~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
..+.||..|+.- ++..++|++|+.+.+|-+++.+ |+ ..++|..++.++....+...+...+..+.+
T Consensus 143 a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~ 208 (620)
T PRK14954 143 AFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDA 208 (620)
T ss_pred HHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 356788887764 2446777777778899999988 77 589999999999887777777655443433
No 105
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=5.4e-13 Score=144.02 Aligned_cols=161 Identities=17% Similarity=0.316 Sum_probs=120.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------ 268 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------ 268 (455)
..|.+|++|+|++.+++.|.+.+.. | ..+..+||+||+|+|||++|+++|+.+++.
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4588999999999999888776641 2 235689999999999999999999998643
Q ss_pred -----------------EEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhH
Q 047029 269 -----------------IYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTL 325 (455)
Q Consensus 269 -----------------v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l 325 (455)
++.++..+..+-.++++++... ....|++|||+|.+.. ...
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----------------~a~ 149 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST----------------AAF 149 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH----------------HHH
Confidence 2233333323445677776443 2467999999998732 346
Q ss_pred hhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 326 SGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 326 s~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
+.||..|+.. ++..++|++|+.++++.+.++. |+ ..++|..++.++....+...+..++....+
T Consensus 150 naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~ 213 (598)
T PRK09111 150 NALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVED 213 (598)
T ss_pred HHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 7788877753 3557788888888889899888 87 579999999999988888887766554443
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=5.4e-14 Score=155.25 Aligned_cols=154 Identities=26% Similarity=0.314 Sum_probs=106.0
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEecc
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMELA 275 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~~ 275 (455)
++.++|.++..+++++.+.. ..+.++||+||||||||++|+++|... +..++.++.+
T Consensus 185 ~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~ 251 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH
Confidence 55678877777777665542 125689999999999999999999875 5666766655
Q ss_pred ccC--------ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEE
Q 047029 276 SLR--------SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERII 345 (455)
Q Consensus 276 ~~~--------~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iv 345 (455)
.+. ....++.++... ..++||||||||.++..... ...+.....+ +.....+ +++.+
T Consensus 252 ~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--------~~g~~d~~nl---Lkp~L~~--g~i~v 318 (758)
T PRK11034 252 SLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--------SGGQVDAANL---IKPLLSS--GKIRV 318 (758)
T ss_pred HHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--------CCcHHHHHHH---HHHHHhC--CCeEE
Confidence 432 123455665443 35789999999998752110 0111112222 2222222 57889
Q ss_pred EEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 346 VFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 346 I~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
|++||.++ ..|+||.| ||+ .|+++.|+.+++..|++.+..
T Consensus 319 IgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 319 IGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred EecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 99999765 57999999 996 799999999999999986654
No 107
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=2.6e-13 Score=150.86 Aligned_cols=158 Identities=23% Similarity=0.232 Sum_probs=115.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHH-----
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSD----- 282 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~----- 282 (455)
+..|.+++|+.|++.+...... +......++|+||||||||++++++|+.++.+++.++++...+...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4788999999999877633221 2223446999999999999999999999999999998876543322
Q ss_pred ----------HHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc----c-------cCC
Q 047029 283 ----------LRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW----S-------SCG 340 (455)
Q Consensus 283 ----------l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----~-------~~~ 340 (455)
+.+.+.... ...||+|||||.+.. .......+.|++.+|.-. . -.-
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~------------~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSS------------DMRGDPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhccc------------ccCCCHHHHHHHHhccccEEEEecccccccccC
Confidence 233333332 345899999998743 011123567777777310 0 011
Q ss_pred CceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 341 DERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 341 ~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.++++|+|+|.. .|+|||+. ||. .|.+..++.++..+|+++|+.
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 568999999987 49999999 996 689999999999999999984
No 108
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=8.6e-13 Score=143.27 Aligned_cols=159 Identities=20% Similarity=0.307 Sum_probs=117.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|++.+++.|...+.. | .-..+||||||||||||++|+++|+.+++
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 4578999999999998888776652 1 12458999999999999999999999865
Q ss_pred -------------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhh
Q 047029 268 -------------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGL 328 (455)
Q Consensus 268 -------------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~L 328 (455)
+++.++......-..+++++.... ...|++|||+|.+-. ...+.|
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------------~a~naL 141 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------------AAFNAL 141 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------HHHHHH
Confidence 344444433234456777765442 357999999998732 356778
Q ss_pred hhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 329 LNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 329 L~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
|..|+.- +...++|++|+.++.+-++|++ |+ ..++|..++.++....+......++...
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~i 200 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEI 200 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 8888853 3557888888888899999998 87 5789999988887776666665544333
No 109
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.50 E-value=1e-12 Score=125.76 Aligned_cols=169 Identities=15% Similarity=0.223 Sum_probs=106.5
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
++...|.+||++.+..+ +.+...+..+.. +....++++|+||||||||+|++++++++ +..++.+++
T Consensus 9 ~~~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 9 LGPPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 44566778999873321 223344443322 23345789999999999999999999986 667777777
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC-
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE- 353 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~- 353 (455)
..... .+.......+|+|||+|.+.. .. ...|+..++..... +..++|+|++.+.
T Consensus 79 ~~~~~------~~~~~~~~~~liiDdi~~l~~-------------~~---~~~L~~~~~~~~~~--~~~~vl~~~~~~~~ 134 (227)
T PRK08903 79 ASPLL------AFDFDPEAELYAVDDVERLDD-------------AQ---QIALFNLFNRVRAH--GQGALLVAGPAAPL 134 (227)
T ss_pred HHhHH------HHhhcccCCEEEEeChhhcCc-------------hH---HHHHHHHHHHHHHc--CCcEEEEeCCCCHH
Confidence 65421 122334568999999997621 12 23344555443322 2345666665432
Q ss_pred --CCCccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 --RLDPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 --~Ld~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.+.+.|.+ || ...|+++.|+.++...++..+....+..+.+++.+.+
T Consensus 135 ~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L 185 (227)
T PRK08903 135 ALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYL 185 (227)
T ss_pred hCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35566776 66 5799999999998888887766554444544444443
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=1.8e-13 Score=154.32 Aligned_cols=199 Identities=17% Similarity=0.161 Sum_probs=127.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..++.++|.++..+++++.|. ...+++.+|+||||||||++++++|..+ +.+++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 35578889998887666665543 1236789999999999999999999986 678888
Q ss_pred EeccccCC--------hHHHHHHHHhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCC
Q 047029 272 MELASLRS--------NSDLRRLLVST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCG 340 (455)
Q Consensus 272 l~~~~~~~--------~~~l~~ll~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 340 (455)
++++.+.. ...++.++... ..+.|||||||+.+...... .+ .....+-|...+ . .
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~-------~~-~~d~~~~Lk~~l----~--~ 300 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA-------EG-AMDAGNMLKPAL----A--R 300 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC-------cc-hhHHHHHhchhh----h--c
Confidence 88776521 23566777554 35899999999998642110 01 111112222221 1 2
Q ss_pred CceEEEEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc--CCC---chHHHHHhhccccCchh
Q 047029 341 DERIIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK--SHS---MFDEIEELIKEVEVTPA 410 (455)
Q Consensus 341 ~~~ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~--~~~---l~~ei~~ll~~~~~tpa 410 (455)
+++.+|++|+..+ .+|+|+.| ||. .|.++.|+.+++..+++.+...- .|. ..+.+...+.-. .
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls----~ 373 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLS----H 373 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhc----c
Confidence 5688888888653 47999999 996 58999999999999888764432 122 233343333210 1
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhh
Q 047029 411 EEFMKSEDADVALNGLVDFLLRKK 434 (455)
Q Consensus 411 ~~l~~~~~~~~al~~l~~~l~~~~ 434 (455)
.++-.+.-|++|++-+-++..+.+
T Consensus 374 ~yi~~r~lPdkAidlld~a~a~~~ 397 (852)
T TIGR03346 374 RYITDRFLPDKAIDLIDEAAARIR 397 (852)
T ss_pred ccccccCCchHHHHHHHHHHHHHH
Confidence 222334456666666665555443
No 111
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.49 E-value=4.9e-13 Score=147.08 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=104.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChH
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNS 281 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~ 281 (455)
.|.+|++++|++++... ...+...+.. + ...++|||||||||||++|+++|+.++.+++.+++... +..
T Consensus 23 RP~tldd~vGQe~ii~~-~~~L~~~i~~-------~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i~ 91 (725)
T PRK13341 23 RPRTLEEFVGQDHILGE-GRLLRRAIKA-------D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GVK 91 (725)
T ss_pred CCCcHHHhcCcHHHhhh-hHHHHHHHhc-------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hhH
Confidence 48999999999887643 1122222222 1 12479999999999999999999999988888876532 222
Q ss_pred HHHHHHHh-------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc--CCC
Q 047029 282 DLRRLLVS-------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT--NYK 352 (455)
Q Consensus 282 ~l~~ll~~-------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT--N~~ 352 (455)
.++..+.. ..++.||||||||.+.. .....|+..++. +.+++|++| |..
T Consensus 92 dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~----------------~qQdaLL~~lE~------g~IiLI~aTTenp~ 149 (725)
T PRK13341 92 DLRAEVDRAKERLERHGKRTILFIDEVHRFNK----------------AQQDALLPWVEN------GTITLIGATTENPY 149 (725)
T ss_pred HHHHHHHHHHHHhhhcCCceEEEEeChhhCCH----------------HHHHHHHHHhcC------ceEEEEEecCCChH
Confidence 33333322 23567999999998732 123345555543 235666544 444
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
..+++++++ |+ ..+.++.++.++...++++++.
T Consensus 150 ~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 150 FEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 678999998 65 4699999999999999999886
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.1e-12 Score=142.17 Aligned_cols=162 Identities=18% Similarity=0.267 Sum_probs=116.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++|+|++.+++.|...+.. | ..+..||||||||+|||++++++|+.+++
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 3589999999999999888776642 1 22457999999999999999999998853
Q ss_pred ------------cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 268 ------------DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 268 ------------~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
+++.++.+...+...++++.... ....|+||||+|.+.. ..++.||
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------------~a~naLL 141 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------------AAFNALL 141 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----------------HHHHHHH
Confidence 23444443333445566554332 2467999999997732 3466788
Q ss_pred hhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 330 NFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 330 ~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
..++.-. ...++|++|+..+.+.+.+.+ |+ ..++|..++..+....+...+...+....++
T Consensus 142 k~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~e 202 (585)
T PRK14950 142 KTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPG 202 (585)
T ss_pred HHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 8877642 457777888888888888887 77 4689999999998888887776655444433
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=7.4e-13 Score=141.64 Aligned_cols=179 Identities=16% Similarity=0.187 Sum_probs=116.2
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEe
Q 047029 199 NLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDME 273 (455)
Q Consensus 199 ~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~ 273 (455)
.+....+||+++..+.-. .....+...... .+. +.+.++|||++|||||+|++|+|+++ +..++++.
T Consensus 280 ~L~~~~TFDnFvvG~sN~-~A~aaa~avae~------~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNR-FAHAAAVAVAEA------PAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCCCHhhhcCCCccH-HHHHHHHHHHhC------ccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 455667899987544322 112222222221 122 23459999999999999999999987 56788887
Q ss_pred ccccCC-------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 274 LASLRS-------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 274 ~~~~~~-------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
+..+.. ...+..+.....+..+|+||||+.+.. . ..+...|++.++.+... +.-||
T Consensus 352 aeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~g-----------k---e~tqeeLF~l~N~l~e~---gk~II 414 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLED-----------K---ESTQEEFFHTFNTLHNA---NKQIV 414 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccC-----------C---HHHHHHHHHHHHHHHhc---CCCEE
Confidence 765421 111122223345678999999998743 1 12234455555555432 23355
Q ss_pred EEcCCC----CCCCccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 347 FTTNYK----ERLDPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 347 ~TTN~~----~~Ld~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
+|+|.+ ..+++.|.+ || ...+++..|+.+.|..|++......+..+.+++.+.|..
T Consensus 415 ITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~ 476 (617)
T PRK14086 415 LSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIAS 476 (617)
T ss_pred EecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 577743 457889999 77 677899999999999999999888777777777777644
No 114
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.47 E-value=4.9e-13 Score=143.31 Aligned_cols=171 Identities=24% Similarity=0.314 Sum_probs=115.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEE
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIY 270 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~ 270 (455)
..|.+|++++|.+...+.+...+. . +.+..+|||||||||||++|+++++++ +.+++
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~----~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC----G---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh----C---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 467899999999988877765421 1 125689999999999999999998753 35788
Q ss_pred EEeccccC-ChHHHH-HHH--------------------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcch
Q 047029 271 DMELASLR-SNSDLR-RLL--------------------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQ 322 (455)
Q Consensus 271 ~l~~~~~~-~~~~l~-~ll--------------------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~ 322 (455)
.++++... ++..+. .++ .....+.+||||||+.+..
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~---------------- 189 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHP---------------- 189 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCH----------------
Confidence 88876421 111110 000 1122457999999998743
Q ss_pred hhHhhhhhhhhcc--------ccc-----------------CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHH
Q 047029 323 VTLSGLLNFVDGL--------WSS-----------------CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPG 377 (455)
Q Consensus 323 ~~ls~LL~~ldg~--------~~~-----------------~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~ 377 (455)
...+.||..|+.. .+. ..+-++|++|||.++.|+|++++ |+ ..|+|+.++.+
T Consensus 190 ~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~e 266 (531)
T TIGR02902 190 VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDE 266 (531)
T ss_pred HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHH
Confidence 2344455544321 000 01225677788899999999999 88 57899999999
Q ss_pred HHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 378 GFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 378 ~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
++..++++.+...+..+.++.-+++.
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 99999999987766555555544443
No 115
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=2.7e-12 Score=131.26 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=108.1
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---------CcEEEEec
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---------FDIYDMEL 274 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---------~~v~~l~~ 274 (455)
..-+.+.+-++..++|...+...+.+ ..+.++++|||||||||++++++++.+. +.++.+++
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 34467889888888888877755442 1245899999999999999999998763 56777887
Q ss_pred cccCChHH--------------------------HHHHHH---hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhH
Q 047029 275 ASLRSNSD--------------------------LRRLLV---STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTL 325 (455)
Q Consensus 275 ~~~~~~~~--------------------------l~~ll~---~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l 325 (455)
....+... +..++. ...++.||+|||+|.+.. ..+..+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~-------------~~~~~L 149 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG-------------DDDDLL 149 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc-------------CCcHHH
Confidence 65432110 111221 223467999999998852 111233
Q ss_pred hhhhhhhhcccccCCCceEEEEEcCCCC---CCCccccCCCcee-EEEEeCCCCHHHHHHHHHHhhc
Q 047029 326 SGLLNFVDGLWSSCGDERIIVFTTNYKE---RLDPALLRPGRMD-MHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 326 s~LL~~ldg~~~~~~~~~ivI~TTN~~~---~Ld~allRpGR~d-~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
..|+...+.. ...+.++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++...+++..+.
T Consensus 150 ~~l~~~~~~~-~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 150 YQLSRARSNG-DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhHhcccccc-CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4444331111 11124578888998775 58888877 664 6799999999999999998875
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=6.3e-13 Score=139.40 Aligned_cols=178 Identities=18% Similarity=0.288 Sum_probs=112.5
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEe
Q 047029 199 NLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDME 273 (455)
Q Consensus 199 ~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~ 273 (455)
++.+..|||+++..+.-.. ....+..+...+ | +.++++||||||||||+|++|+|+++ +..+++++
T Consensus 97 ~l~~~~tFdnFv~g~~n~~-a~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSF-AYHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCCCcccccccCCchHH-HHHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667789999884333222 222333333222 1 23469999999999999999999987 45677777
Q ss_pred ccccCC-------hHHHHHHHHhh-CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEE
Q 047029 274 LASLRS-------NSDLRRLLVST-GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERII 345 (455)
Q Consensus 274 ~~~~~~-------~~~l~~ll~~~-~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iv 345 (455)
+..+.. ...+....... .++.+|+|||++.+.+ . ..+...++..++.+... +. .+
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~-----------~---~~~q~elf~~~n~l~~~--~k-~i 230 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG-----------K---TGVQTELFHTFNELHDS--GK-QI 230 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC-----------c---HHHHHHHHHHHHHHHHc--CC-eE
Confidence 655311 01112222222 2578999999998743 0 11223455555555443 22 45
Q ss_pred EEEc-CCCCC---CCccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 346 VFTT-NYKER---LDPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 346 I~TT-N~~~~---Ld~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
|+|+ ++|.. +++.+.+ || ...+.+..|+.+.|..+++..+...+..+.+++...+.+
T Consensus 231 Iitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~ 293 (440)
T PRK14088 231 VICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_pred EEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 5555 45544 5677887 66 468899999999999999999887666777777666654
No 117
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=1.2e-12 Score=135.62 Aligned_cols=176 Identities=23% Similarity=0.252 Sum_probs=112.1
Q ss_pred Cc-ccccCHHHHHHHHHHHHHHHHhHHHHhh--hcC-CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--
Q 047029 206 FD-TLAMDPVLKQALIDDLDRFVKRREFYSR--VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS-- 279 (455)
Q Consensus 206 fd-~l~g~~~~k~~l~~~l~~~l~~~~~~~~--~g~-~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~-- 279 (455)
++ .++|++++|+.+...+...+++-..... -+. .++.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 44 4799999999887766544333211000 011 23578999999999999999999999999999999876532
Q ss_pred ------hHHHHHHHHh------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC---C----
Q 047029 280 ------NSDLRRLLVS------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC---G---- 340 (455)
Q Consensus 280 ------~~~l~~ll~~------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~---~---- 340 (455)
...+..++.. ...++||||||||.+... ....+...+.....+.+.||..|||..... +
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~--~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK--SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc--cCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 1223333322 236799999999998541 111111111122346788999998753111 1
Q ss_pred --CceEEEEEcCCCCC----------------------------------------------------CCccccCCCcee
Q 047029 341 --DERIIVFTTNYKER----------------------------------------------------LDPALLRPGRMD 366 (455)
Q Consensus 341 --~~~ivI~TTN~~~~----------------------------------------------------Ld~allRpGR~d 366 (455)
.+.++|.|+|-... +.|+|+ ||+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCC
Confidence 23467777775110 122333 5999
Q ss_pred EEEEeCCCCHHHHHHHHHH
Q 047029 367 MHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~ 385 (455)
..+.|...+.++...|+..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~ 323 (412)
T PRK05342 305 VVATLEELDEEALVRILTE 323 (412)
T ss_pred eeeecCCCCHHHHHHHHHH
Confidence 9999999999998888863
No 118
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.7e-12 Score=139.35 Aligned_cols=161 Identities=19% Similarity=0.318 Sum_probs=121.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC--------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-------------- 266 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-------------- 266 (455)
..|.+|++|+|++.+++.|.+.+.. ...+..||||||+|+|||++|+++|+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4589999999999999988877651 22366899999999999999999999885
Q ss_pred -----------CcEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 267 -----------FDIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 267 -----------~~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
.+++.++..+..+...++.++.... ...|++|||+|.+.. ...+.|+
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----------------~a~naLL 142 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----------------AAFNAFL 142 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----------------HHHHHHH
Confidence 3455565554344566777764432 356999999998732 3466788
Q ss_pred hhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 330 NFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 330 ~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
..|+.. ++..++|++|+.+.+|-++|++ |+ ..++|..++.++....+...+...+....+
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~ 202 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEP 202 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 888764 2457788888888899999998 87 469999999999888888777665544443
No 119
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.45 E-value=3.9e-12 Score=127.34 Aligned_cols=160 Identities=16% Similarity=0.192 Sum_probs=109.5
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEec
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMEL 274 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~ 274 (455)
-..|.+|++++|.+++++.+...+. . +. ..+++||||||||||++++++++.+. ..++.++.
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~----~-------~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVK----E-------KN--MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHh----C-------CC--CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 3568899999999888877766553 1 11 22589999999999999999999973 23444444
Q ss_pred cccCChHHHHHHHHh----h----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 275 ASLRSNSDLRRLLVS----T----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~----~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
+.......++..+.. . ..+.+|+|||+|.+.. .....|+..++... ....+|
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----------------~~~~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 77 SDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS----------------DAQQALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------------HHHHHHHHHHhcCC----CCCeEE
Confidence 433222222222211 1 2356999999998732 12345666665432 335677
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF 395 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~ 395 (455)
+++|.+..+.+++.+ |+. .++++.++.++...+++.++...+..+.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~ 182 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEIT 182 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 788888888888888 775 5899999999999999988876654443
No 120
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.45 E-value=3.9e-13 Score=151.14 Aligned_cols=152 Identities=21% Similarity=0.293 Sum_probs=108.2
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEec
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMEL 274 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~ 274 (455)
.++.++|.++..+++++.|. ...+++++|+||||||||++|+++|..+ +..++.+++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 46778888888887777654 2236799999999999999999999987 478999988
Q ss_pred cccCC--------hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh-hhhhcccccCCCce
Q 047029 275 ASLRS--------NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL-NFVDGLWSSCGDER 343 (455)
Q Consensus 275 ~~~~~--------~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL-~~ldg~~~~~~~~~ 343 (455)
+.+.. +..++.++... ..+.|||||||+.++..... .+ ....+.+| ..+. .+++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-------~g--~~~~a~lLkp~l~------rg~l 308 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-------EG--AIDAANILKPALA------RGEL 308 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-------CC--cccHHHHhHHHHh------CCCc
Confidence 76421 24677777654 35789999999998752110 01 11122232 2222 1567
Q ss_pred EEEEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 344 IIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 344 ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
.+|++|+..+ ..|+++.| ||. .|.++.|+.++...|++...
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHH
Confidence 8888888653 47999999 996 58999999999888877543
No 121
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=2.5e-12 Score=134.87 Aligned_cols=181 Identities=20% Similarity=0.268 Sum_probs=112.1
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 199 NLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 199 ~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
.+++..|||+.+..+.-+. ....+..+...+ ...+....++++||||||+|||+|++|+|+++ +..+++++..
T Consensus 103 ~l~~~~tFdnFv~g~~N~~-a~~~a~~~a~~~---~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 103 ELDPLMTFANFLVTPENDL-PHRILQEFTKVS---EQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CCCccccccceeeCCcHHH-HHHHHHHHHhcc---ccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4566779999874332221 112222222111 00011123579999999999999999999987 6778877765
Q ss_pred ccCC-------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE
Q 047029 276 SLRS-------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT 348 (455)
Q Consensus 276 ~~~~-------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T 348 (455)
.+.. ............+..+|+||||+.+.+ .. .+...++..++.+... +..+|+|
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~-----------k~---~~qeelf~l~N~l~~~---~k~IIlt 241 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG-----------KG---ATQEEFFHTFNSLHTE---GKLIVIS 241 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC-----------Ch---hhHHHHHHHHHHHHHC---CCcEEEe
Confidence 4311 111112112235678999999998632 11 1223344444433332 2356666
Q ss_pred cCC-C---CCCCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 349 TNY-K---ERLDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 349 TN~-~---~~Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
+|. | ..++++|.+ ||. ..+.+..|+.+.+..+++..+...+..+.+++...+
T Consensus 242 s~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~l 299 (445)
T PRK12422 242 STCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFL 299 (445)
T ss_pred cCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 654 4 457889999 885 899999999999999999988877666767666644
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=99.44 E-value=3.5e-12 Score=122.98 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=106.8
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC-CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~-~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+..++..+||+.+... ....++.+..+.... ..| .++++||||+|||||+|++|+|+++ +..+++++
T Consensus 10 ~~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 10 VRLRDDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 4456667999987432 233444444332211 122 3689999999999999999999875 56777887
Q ss_pred ccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 274 LASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 274 ~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
..++... ...++....+..+|+|||++.+.. .. .....|++.++....+ +..+++.++..|.
T Consensus 81 ~~~~~~~--~~~~~~~~~~~d~LiiDDi~~~~~-----------~~---~~~~~Lf~l~n~~~~~--g~~ilits~~~p~ 142 (234)
T PRK05642 81 LAELLDR--GPELLDNLEQYELVCLDDLDVIAG-----------KA---DWEEALFHLFNRLRDS--GRRLLLAASKSPR 142 (234)
T ss_pred HHHHHhh--hHHHHHhhhhCCEEEEechhhhcC-----------Ch---HHHHHHHHHHHHHHhc--CCEEEEeCCCCHH
Confidence 7665321 123333344557999999997632 11 1223455555544332 2344444444443
Q ss_pred ---CCCccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHH
Q 047029 354 ---RLDPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEE 400 (455)
Q Consensus 354 ---~Ld~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ 400 (455)
.+.|.|.+ |+ ...+.+..|+.+++..+++......+..+.+++..
T Consensus 143 ~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~ 192 (234)
T PRK05642 143 ELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGH 192 (234)
T ss_pred HcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34688988 77 47888999999999999986544333334444433
No 123
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.44 E-value=1.2e-12 Score=129.51 Aligned_cols=150 Identities=21% Similarity=0.330 Sum_probs=100.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc---EEEEeccccC
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASLR 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~~ 278 (455)
.|.++++.+|++++.-+ ...|...+.. +. -..++||||||||||+||+.+|+-..-+ ++.+....-
T Consensus 133 RPktL~dyvGQ~hlv~q-~gllrs~ieq-------~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a- 201 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQ-DGLLRSLIEQ-------NR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA- 201 (554)
T ss_pred CcchHHHhcchhhhcCc-chHHHHHHHc-------CC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-
Confidence 57889999998776544 2222222222 11 2379999999999999999999988655 444444432
Q ss_pred ChHHHHHHHHhh-------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc--
Q 047029 279 SNSDLRRLLVST-------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT-- 349 (455)
Q Consensus 279 ~~~~l~~ll~~~-------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT-- 349 (455)
.-.+++.+|.+. +++.|||||||+.+-. .....||-.++. +.+++|++|
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----------------sQQD~fLP~VE~------G~I~lIGATTE 259 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----------------SQQDTFLPHVEN------GDITLIGATTE 259 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----------------hhhhcccceecc------CceEEEecccC
Confidence 346788888654 4689999999998621 112223433321 456677644
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
|+.-.|..||+. |+ .++-+...+.+....++.+-.
T Consensus 260 NPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 260 NPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred CCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 566789999999 77 456677788888888877643
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.41 E-value=2.1e-12 Score=123.30 Aligned_cols=178 Identities=18% Similarity=0.268 Sum_probs=107.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~ 275 (455)
++..|||+++-.+.-+ .....+..+...+ |. .-..++||||+|+|||+|++|+++++ +..+++++..
T Consensus 2 n~~~tFdnfv~g~~N~-~a~~~~~~ia~~~------~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNE-LAYAAAKAIAENP------GE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp -TT-SCCCS--TTTTH-HHHHHHHHHHHST------TT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CCCCccccCCcCCcHH-HHHHHHHHHHhcC------CC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 4556899986433221 2223333333332 11 12358999999999999999999986 5678888765
Q ss_pred ccCC-------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE
Q 047029 276 SLRS-------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT 348 (455)
Q Consensus 276 ~~~~-------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T 348 (455)
.+.. ...+.++......-.+|+|||++.+.. ...+...|...++.+... +..+|+.+
T Consensus 74 ~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~--------------~~~~q~~lf~l~n~~~~~--~k~li~ts 137 (219)
T PF00308_consen 74 EFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG--------------KQRTQEELFHLFNRLIES--GKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT--------------HHHHHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred HHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC--------------chHHHHHHHHHHHHHHhh--CCeEEEEe
Confidence 5421 123344445566789999999998743 123445566666655543 34555555
Q ss_pred cCCCCC---CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 349 TNYKER---LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 349 TN~~~~---Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
...|.. +++.|.. ||. ..+++..|+.+.+..+++......+..+.+++.+.+..
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLAR 196 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 456654 4577777 665 58999999999999999999988887888887777654
No 125
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.41 E-value=3.6e-12 Score=127.24 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=91.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHH-------------------HHHhhCCceEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRR-------------------LLVSTGNRSILVIEDI 301 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~-------------------ll~~~~~~~IL~iDEi 301 (455)
.+.+||.||||||||++++.+|..++.+++.++++......++.- +......+.+|++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 578999999999999999999999999999998765422211100 0112245788999999
Q ss_pred cchhhhhhhcCCCCCCCCcchhhHhhhhhh-----hhcc--cccCCCceEEEEEcCCCC------------CCCccccCC
Q 047029 302 DCSIELENRQCGGGYDENNSQVTLSGLLNF-----VDGL--WSSCGDERIIVFTTNYKE------------RLDPALLRP 362 (455)
Q Consensus 302 D~l~~~~~~~~~~~~~~~~~~~~ls~LL~~-----ldg~--~~~~~~~~ivI~TTN~~~------------~Ld~allRp 362 (455)
|.+-+ .....+..+|+. +++. .-.......+|+|.|..+ .+++|++.
T Consensus 144 n~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 144 DAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 97632 122233334432 1110 001123467899999865 36899999
Q ss_pred CceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 363 GRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 363 GR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
||-+.+.++||+.++-.+|+....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhc
Confidence 998899999999999999887654
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=2.9e-12 Score=141.72 Aligned_cols=159 Identities=16% Similarity=0.271 Sum_probs=111.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLL 287 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll 287 (455)
.++|+++.++.|.+.+.....+- .. ...|...+||+||||||||.+|+++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 46788888888888776432210 00 011233699999999999999999999999999999988753322222221
Q ss_pred ---------------H---hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh-cccccC------CCc
Q 047029 288 ---------------V---STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD-GLWSSC------GDE 342 (455)
Q Consensus 288 ---------------~---~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~------~~~ 342 (455)
. .....+||+|||||.+-+ ...+.|++.|| |..... -.+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~----------------~v~~~LLq~ld~G~ltd~~g~~vd~rn 598 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP----------------DVFNLLLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH----------------HHHHHHHHHHhcCeeecCCCceecCCC
Confidence 1 113458999999998743 35677888887 322111 146
Q ss_pred eEEEEEcCCC-------------------------CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 343 RIIVFTTNYK-------------------------ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 343 ~ivI~TTN~~-------------------------~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.+||+|||.- ..+.|.++. |+|..|.|...+.++..+|+..++.
T Consensus 599 ~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 7899999922 125567777 9999999999999999999988775
No 127
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.8e-11 Score=126.48 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=105.1
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEeccccCC
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASLRS 279 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~~~ 279 (455)
..+.+++-++..++|...+...+.+ ..+.++++|||||||||++++.+++.+ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3456777676667776666544332 124579999999999999999999987 46788888754321
Q ss_pred h-----------------------HHHHHH----HHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhh
Q 047029 280 N-----------------------SDLRRL----LVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFV 332 (455)
Q Consensus 280 ~-----------------------~~l~~l----l~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~l 332 (455)
. ..+... +.....+.||+|||+|.+.. ......+..|+..+
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~------------~~~~~~l~~l~~~~ 166 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE------------KEGNDVLYSLLRAH 166 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc------------cCCchHHHHHHHhh
Confidence 1 111111 11223458999999998751 11123455566655
Q ss_pred hcccccCCCceEEEEEcCCC---CCCCccccCCCce-eEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 333 DGLWSSCGDERIIVFTTNYK---ERLDPALLRPGRM-DMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 333 dg~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~-d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
+... +.++.+|+++|.. +.+++.+.+ |+ ...|+|++++.++..++++..+..
T Consensus 167 ~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 167 EEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred hccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 5432 2357788888865 457777766 55 357899999999999999988753
No 128
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.40 E-value=3.9e-12 Score=110.64 Aligned_cols=115 Identities=29% Similarity=0.390 Sum_probs=80.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHH-----------HHHHhhCCceEEEEecccchhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLR-----------RLLVSTGNRSILVIEDIDCSIE 306 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~-----------~ll~~~~~~~IL~iDEiD~l~~ 306 (455)
.++++++||||||||++++++++.+ +.+++.+++.......... ........+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 5689999999999999999999999 8899999887654332221 1122334689999999997622
Q ss_pred hhhhcCCCCCCCCcchhhHhhhhhhhhccccc--CCCceEEEEEcCCCC--CCCccccCCCceeEEEEeCC
Q 047029 307 LENRQCGGGYDENNSQVTLSGLLNFVDGLWSS--CGDERIIVFTTNYKE--RLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~~~~ivI~TTN~~~--~Ld~allRpGR~d~~I~~~~ 373 (455)
.....++..+...... ...+..+|+++|... .+++.+.. |++.++.+++
T Consensus 99 ----------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 ----------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred ----------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 1233444444443221 124578888998776 77888888 9998888763
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=3.9e-12 Score=131.38 Aligned_cols=174 Identities=21% Similarity=0.245 Sum_probs=109.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhh----hcCC-CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC---
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSR----VGKA-WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS--- 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~----~g~~-~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~--- 279 (455)
.++|+++.|+.+...+....++-..... -+++ .+.++||+||||||||++|+++|..++.++..++++.+..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4588999998887776443333110000 0111 1468999999999999999999999999999888766521
Q ss_pred -----hHHHHHHHHh------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc---C------
Q 047029 280 -----NSDLRRLLVS------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS---C------ 339 (455)
Q Consensus 280 -----~~~l~~ll~~------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~---~------ 339 (455)
...+..++.. ...++||||||||.+... +...+...+.....+.+.||..|||.... .
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~--~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~ 235 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK--SENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHP 235 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh--hccccccccccchhHHHHHHHHhhccceecccCCCcccc
Confidence 1223333332 235789999999988641 11111111111224667788888876432 1
Q ss_pred CCceEEEEEcCCCC--------------------------------------------------CCCccccCCCceeEEE
Q 047029 340 GDERIIVFTTNYKE--------------------------------------------------RLDPALLRPGRMDMHI 369 (455)
Q Consensus 340 ~~~~ivI~TTN~~~--------------------------------------------------~Ld~allRpGR~d~~I 369 (455)
..+.++|+|+|-.. .+.|+|+ ||+|..+
T Consensus 236 ~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv 313 (413)
T TIGR00382 236 YQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIA 313 (413)
T ss_pred CCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEe
Confidence 13467889988610 0123333 5999999
Q ss_pred EeCCCCHHHHHHHHHH
Q 047029 370 HMSYLTPGGFKILAFN 385 (455)
Q Consensus 370 ~~~~p~~~~~~~L~~~ 385 (455)
.|...+.++...|+..
T Consensus 314 ~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 314 TLEKLDEEALIAILTK 329 (413)
T ss_pred ecCCCCHHHHHHHHHH
Confidence 9999999988877765
No 130
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=1.1e-11 Score=125.56 Aligned_cols=130 Identities=26% Similarity=0.274 Sum_probs=92.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHH------HHHH------HhhCC---ce---EEEEeccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDL------RRLL------VSTGN---RS---ILVIEDID 302 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l------~~ll------~~~~~---~~---IL~iDEiD 302 (455)
.+.+||-||||||||++|+++|..++.+++.+.|+.-...+++ .... .-... .. |+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 5689999999999999999999999999999999864332222 2111 00111 13 99999999
Q ss_pred chhhhhhhcCCCCCCCCcchhhHhhhhhhhhc-------cc-ccCCCceEEEEEcC-----CCCCCCccccCCCceeEEE
Q 047029 303 CSIELENRQCGGGYDENNSQVTLSGLLNFVDG-------LW-SSCGDERIIVFTTN-----YKERLDPALLRPGRMDMHI 369 (455)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~-~~~~~~~ivI~TTN-----~~~~Ld~allRpGR~d~~I 369 (455)
...+ .+.+.||..|+. .. -.-+...++|+|+| ....|++|+++ ||.+.+
T Consensus 123 ra~p----------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 123 RAPP----------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred cCCH----------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 7532 566777777764 11 12224567888889 44568999999 999999
Q ss_pred EeCCC-CHHHHHHHHHHhhc
Q 047029 370 HMSYL-TPGGFKILAFNYLK 388 (455)
Q Consensus 370 ~~~~p-~~~~~~~L~~~~l~ 388 (455)
.++|| ..++...+......
T Consensus 185 ~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 185 YVDYPDSEEEERIILARVGG 204 (329)
T ss_pred ecCCCCchHHHHHHHHhCcc
Confidence 99999 55555555555544
No 131
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.3e-12 Score=134.14 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=107.2
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC------ChHHHHHHHHhh--CCceEEEEecccchhhhhhh
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR------SNSDLRRLLVST--GNRSILVIEDIDCSIELENR 310 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~------~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~ 310 (455)
.....+||+|+||||||++++++|.++|.+++.++|.++. .+..+...|..+ .+|+|||+-++|.+.. ++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d~ 506 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--DQ 506 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--cC
Confidence 3345699999999999999999999999999999998873 345677777655 3799999999998752 11
Q ss_pred cCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
. ++.+-.....+..++. +|-... ....+++|+||+..+.|++.+.+ -|-..|.++.|++++|.++++.|+...
T Consensus 507 d---gged~rl~~~i~~~ls-~e~~~~-~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 507 D---GGEDARLLKVIRHLLS-NEDFKF-SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL 579 (953)
T ss_pred C---CchhHHHHHHHHHHHh-cccccC-CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc
Confidence 1 1111111222233333 222222 23679999999999999999999 888899999999999999999998754
No 132
>PRK06620 hypothetical protein; Validated
Probab=99.38 E-value=1.8e-11 Score=116.50 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=102.1
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC-CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW-KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~-~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
++.++..+||+++..+.-. .....+..+... ++..+ .+.++||||||||||||++++|+..+..+.. ...
T Consensus 7 ~~~~~~~tfd~Fvvg~~N~-~a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 7 FTTSSKYHPDEFIVSSSND-QAYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCCCchhhEecccHH-HHHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 3445556899987644222 234444433221 23333 3789999999999999999999988753322 111
Q ss_pred cCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC--
Q 047029 277 LRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER-- 354 (455)
Q Consensus 277 ~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~-- 354 (455)
. . ... .....+|+|||||.+- ...+..++|.+. .. +..+++.++..|..
T Consensus 78 ~--~---~~~---~~~~d~lliDdi~~~~----------------~~~lf~l~N~~~---e~--g~~ilits~~~p~~l~ 128 (214)
T PRK06620 78 F--N---EEI---LEKYNAFIIEDIENWQ----------------EPALLHIFNIIN---EK--QKYLLLTSSDKSRNFT 128 (214)
T ss_pred h--c---hhH---HhcCCEEEEeccccch----------------HHHHHHHHHHHH---hc--CCEEEEEcCCCccccc
Confidence 0 1 111 1245799999999531 123444444433 22 34566665554443
Q ss_pred CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 355 LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 355 Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
+ |+|+. |+. ..+.+..|+.+.+.+++++.....+..+.+++.+.+.
T Consensus 129 l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~ 176 (214)
T PRK06620 129 L-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLL 176 (214)
T ss_pred h-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 5 78888 775 4799999999999999998877555556666655543
No 133
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.38 E-value=5.4e-12 Score=132.69 Aligned_cols=166 Identities=17% Similarity=0.319 Sum_probs=129.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc-------------
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------- 268 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------- 268 (455)
.|.+|++++|++.+.+.|.+.+.. ..-..+|||.||.||||||+|+.+|+.+++.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 378999999999999999887762 1124589999999999999999999998643
Q ss_pred -----------EEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 269 -----------IYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 269 -----------v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
++.+|..+-.+-++++++..... +..|.+|||++.+. ....+.||..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS----------------~~afNALLKT 142 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS----------------KQAFNALLKT 142 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh----------------HHHHHHHhcc
Confidence 33333333345577788876653 45799999999873 3556777777
Q ss_pred hhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 332 VDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 332 ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
++. .+..+++|++|-.+.++++.+++ |+ .++.|...+.++....+...+..++....++.-.++
T Consensus 143 LEE----PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~i 206 (515)
T COG2812 143 LEE----PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLI 206 (515)
T ss_pred ccc----CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 654 45789999999999999999999 88 579999999999999999999887766655444443
No 134
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.4e-11 Score=134.20 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=125.7
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEeccc
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMELAS 276 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~~~ 276 (455)
+.|.+-++..++|...|...+.+ -.+...+++|||||||||++++.+.+++ .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56777777777777777665543 1223345799999999999999998877 25678888865
Q ss_pred cCCh-----------------------HHHHHHHHhh----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 277 LRSN-----------------------SDLRRLLVST----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 277 ~~~~-----------------------~~l~~ll~~~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
+... ..+..+|... ....||+|||||.+.. ..+..+-.|+
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~k-------------K~QDVLYnLF 893 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLIT-------------KTQKVLFTLF 893 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCc-------------cHHHHHHHHH
Confidence 4221 2233344332 1246999999999853 1123333333
Q ss_pred hhhhcccccCCCceEEEEEcCC---CCCCCccccCCCceeE-EEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhccc
Q 047029 330 NFVDGLWSSCGDERIIVFTTNY---KERLDPALLRPGRMDM-HIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEV 405 (455)
Q Consensus 330 ~~ldg~~~~~~~~~ivI~TTN~---~~~Ld~allRpGR~d~-~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~ 405 (455)
+. ... .+..++||+++|. ++.|+|.+.. ||.. .|.|++++.+++..|++..+......+.+++-++|.+.
T Consensus 894 R~---~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk 967 (1164)
T PTZ00112 894 DW---PTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK 967 (1164)
T ss_pred HH---hhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 32 211 2345788889985 6678888887 6654 48889999999999999888754334455555555331
Q ss_pred cCchhHHHhccCCHHHHHHHHHHHHHH
Q 047029 406 EVTPAEEFMKSEDADVALNGLVDFLLR 432 (455)
Q Consensus 406 ~~tpa~~l~~~~~~~~al~~l~~~l~~ 432 (455)
. .....|+..||+.+..+.+.
T Consensus 968 V------Aq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 968 V------ANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred h------hhcCCHHHHHHHHHHHHHhh
Confidence 0 12246777788777777654
No 135
>PHA02244 ATPase-like protein
Probab=99.36 E-value=9.8e-12 Score=125.56 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=82.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc----c----CChHHHH--HHHHhhCCceEEEEecccchhhhhhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS----L----RSNSDLR--RLLVSTGNRSILVIEDIDCSIELENR 310 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~----~----~~~~~l~--~ll~~~~~~~IL~iDEiD~l~~~~~~ 310 (455)
+..+||+||||||||++|++||..++.+++.++... + .....+. .++....++.+|+|||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH----
Confidence 457999999999999999999999999999886321 0 1111111 3334456789999999997632
Q ss_pred cCCCCCCCCcchhhHhhhhhhhh--------cccccCCCceEEEEEcCCC-----------CCCCccccCCCceeEEEEe
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVD--------GLWSSCGDERIIVFTTNYK-----------ERLDPALLRPGRMDMHIHM 371 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ld--------g~~~~~~~~~ivI~TTN~~-----------~~Ld~allRpGR~d~~I~~ 371 (455)
.++..|...++ +.. ....+..+|+|+|.+ ..|++|++. || .+|++
T Consensus 195 ------------~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~ 258 (383)
T PHA02244 195 ------------EALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEF 258 (383)
T ss_pred ------------HHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeC
Confidence 22333333332 221 122457899999973 578999999 99 68999
Q ss_pred CCCCHHHH
Q 047029 372 SYLTPGGF 379 (455)
Q Consensus 372 ~~p~~~~~ 379 (455)
+||+..+.
T Consensus 259 dyp~~~E~ 266 (383)
T PHA02244 259 DYDEKIEH 266 (383)
T ss_pred CCCcHHHH
Confidence 99985443
No 136
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=4.3e-12 Score=128.05 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=104.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-------CcE--EEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-------FDI--YDM 272 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-------~~v--~~l 272 (455)
.|.+|+.++|++++++.+.-.+.. +...++||+||||||||++++++|+.+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 467899999999998877643311 1124799999999999999999999982 211 100
Q ss_pred e----c--------------------c----ccCChHHHHHHHH-----------hhCCceEEEEecccchhhhhhhcCC
Q 047029 273 E----L--------------------A----SLRSNSDLRRLLV-----------STGNRSILVIEDIDCSIELENRQCG 313 (455)
Q Consensus 273 ~----~--------------------~----~~~~~~~l~~ll~-----------~~~~~~IL~iDEiD~l~~~~~~~~~ 313 (455)
. + + .+.+.-.+.+.+. ...+..+|++|||+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 0 0 0 0111112222221 112346999999998732
Q ss_pred CCCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCCC-CCCccccCCCceeEEEEeCCCCH-HHHHHH
Q 047029 314 GGYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYKE-RLDPALLRPGRMDMHIHMSYLTP-GGFKIL 382 (455)
Q Consensus 314 ~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-~Ld~allRpGR~d~~I~~~~p~~-~~~~~L 382 (455)
.+++.|++.|+.- ....+...++|+|+|..+ .++++++. ||.++|.+++|.. +++.++
T Consensus 143 ---------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 143 ---------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred ---------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 5567777777532 222334578888888755 58999999 9999999999988 888888
Q ss_pred HHHhhc
Q 047029 383 AFNYLK 388 (455)
Q Consensus 383 ~~~~l~ 388 (455)
+.+...
T Consensus 212 l~~~~~ 217 (334)
T PRK13407 212 IRRRDA 217 (334)
T ss_pred HHHhhc
Confidence 887654
No 137
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.34 E-value=1.8e-12 Score=114.42 Aligned_cols=105 Identities=30% Similarity=0.415 Sum_probs=72.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHH---------------hhCCceEEEEecccchhhh
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLV---------------STGNRSILVIEDIDCSIEL 307 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~---------------~~~~~~IL~iDEiD~l~~~ 307 (455)
++||+||||||||++|+.+|+.++.+++.+.++...+..++..... ...++.|++||||+.+-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 5899999999999999999999999999999887655444432211 11147899999999752
Q ss_pred hhhcCCCCCCCCcchhhHhhhhhhhhccccc----------CCC-----ceEEEEEcCCCC----CCCccccCCCce
Q 047029 308 ENRQCGGGYDENNSQVTLSGLLNFVDGLWSS----------CGD-----ERIIVFTTNYKE----RLDPALLRPGRM 365 (455)
Q Consensus 308 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~----------~~~-----~~ivI~TTN~~~----~Ld~allRpGR~ 365 (455)
...+..|++.+|.-.-. ... +..+|+|+|..+ .+++||++ ||
T Consensus 79 --------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred --------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23445555555422110 011 378999999888 89999999 87
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.34 E-value=1.9e-11 Score=133.18 Aligned_cols=174 Identities=21% Similarity=0.348 Sum_probs=114.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEE
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIY 270 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~ 270 (455)
-.|.+|++++|.....+.+++.+. .+.+..++|+||||||||++|+++++.. +.+++
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 348899999999888877655442 1225579999999999999999998776 34678
Q ss_pred EEeccccCC-hHHH----------------HHHHHh------------hCCceEEEEecccchhhhhhhcCCCCCCCCcc
Q 047029 271 DMELASLRS-NSDL----------------RRLLVS------------TGNRSILVIEDIDCSIELENRQCGGGYDENNS 321 (455)
Q Consensus 271 ~l~~~~~~~-~~~l----------------~~ll~~------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~ 321 (455)
.+++..+.. ...+ .+.+.. ..++.+|||||++.+-.
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------- 279 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------- 279 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH---------------
Confidence 888765421 1111 111111 12457999999998732
Q ss_pred hhhHhhhhhhhhcc--------c----------------ccCCCceEEEE-EcCCCCCCCccccCCCceeEEEEeCCCCH
Q 047029 322 QVTLSGLLNFVDGL--------W----------------SSCGDERIIVF-TTNYKERLDPALLRPGRMDMHIHMSYLTP 376 (455)
Q Consensus 322 ~~~ls~LL~~ldg~--------~----------------~~~~~~~ivI~-TTN~~~~Ld~allRpGR~d~~I~~~~p~~ 376 (455)
.....|+..++.- + ...+..+++|+ ||+.++.++++|++ ||. .++++.++.
T Consensus 280 -~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~ 355 (615)
T TIGR02903 280 -LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTP 355 (615)
T ss_pred -HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCH
Confidence 1223333333210 0 01122345554 66778899999998 996 578999999
Q ss_pred HHHHHHHHHhhcccCCCchHHHHHhhcccc
Q 047029 377 GGFKILAFNYLKIKSHSMFDEIEELIKEVE 406 (455)
Q Consensus 377 ~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~ 406 (455)
++...|+++++......+.+++.+++.+..
T Consensus 356 edi~~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 356 EDIALIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 999999999887655455566666665543
No 139
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=4e-11 Score=122.75 Aligned_cols=153 Identities=19% Similarity=0.284 Sum_probs=111.9
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC------------
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------ 267 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------ 267 (455)
..+|++|++|+|++++++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-+
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~ 79 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP 79 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc
Confidence 36899999999999999988876652 233568999999999999999999998832
Q ss_pred ----------------------cEEEEecc--cc-------CChHHHHHHHHhh------CCceEEEEecccchhhhhhh
Q 047029 268 ----------------------DIYDMELA--SL-------RSNSDLRRLLVST------GNRSILVIEDIDCSIELENR 310 (455)
Q Consensus 268 ----------------------~v~~l~~~--~~-------~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~ 310 (455)
+++.+... +- ..-.+++++.... ..+.|++|||+|.+-
T Consensus 80 ~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~----- 154 (365)
T PRK07471 80 PTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN----- 154 (365)
T ss_pred cccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-----
Confidence 12222210 10 1124455554332 246799999999762
Q ss_pred cCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
....+.||..++.- +...++|++|+.++.+.|.+++ |+ .+|.|+.|+.++..+++....
T Consensus 155 -----------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 -----------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -----------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 24566778777653 2457888899999999999888 88 689999999999888887654
No 140
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.6e-11 Score=129.13 Aligned_cols=175 Identities=17% Similarity=0.307 Sum_probs=111.1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecccc
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASL 277 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~ 277 (455)
+.|||+++..+.- +.....+..+...+ |.. .++++||||+|||||+|++|+++++ +..++++...++
T Consensus 111 ~~tFdnFv~g~~n-~~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSN-EQAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcH-HHHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4789988754432 22334444333222 222 3579999999999999999999976 467777776554
Q ss_pred CCh---------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE
Q 047029 278 RSN---------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT 348 (455)
Q Consensus 278 ~~~---------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T 348 (455)
... ..+.+......+..+|+|||++.+.. ...+...|...++.+... + ..+|+|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~--------------k~~~~e~lf~l~N~~~~~--~-k~iIlt 245 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY--------------KEKTNEIFFTIFNNFIEN--D-KQLFFS 245 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC--------------CHHHHHHHHHHHHHHHHc--C-CcEEEE
Confidence 211 22333334456678999999997632 112333444444444332 2 246667
Q ss_pred cCC-CC---CCCccccCCCce--eEEEEeCCCCHHHHHHHHHHhhcccCC--CchHHHHHhhcc
Q 047029 349 TNY-KE---RLDPALLRPGRM--DMHIHMSYLTPGGFKILAFNYLKIKSH--SMFDEIEELIKE 404 (455)
Q Consensus 349 TN~-~~---~Ld~allRpGR~--d~~I~~~~p~~~~~~~L~~~~l~~~~~--~l~~ei~~ll~~ 404 (455)
+|. |+ .+++.|.. || ...+.+..|+.+++.+++++.+...+. .+.+++...+.+
T Consensus 246 sd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~ 307 (450)
T PRK14087 246 SDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISN 307 (450)
T ss_pred CCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 664 33 46788888 77 478899999999999999998876542 455665555543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.33 E-value=1.4e-11 Score=137.06 Aligned_cols=155 Identities=19% Similarity=0.287 Sum_probs=108.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC---Cc-eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh---
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW---KR-GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN--- 280 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~r-g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~--- 280 (455)
.++|+++.++.|.+.+.. .+.|... |. .+||+||||||||++|+++|..++.+++.++++.....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 456777777766665542 1234321 33 48999999999999999999999999999998765321
Q ss_pred ----------------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc--cC---
Q 047029 281 ----------------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS--SC--- 339 (455)
Q Consensus 281 ----------------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~--~~--- 339 (455)
..+.+.+. ....+||+|||||.+-+ ...+.|+..+|...- ..
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~----------------~~~~~Ll~~ld~g~~~d~~g~~ 589 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP----------------DIYNILLQVMDYATLTDNNGRK 589 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH----------------HHHHHHHHhhccCeeecCCCcc
Confidence 12333332 23568999999997632 356677888774311 11
Q ss_pred --CCceEEEEEcCCCC-------------------------CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 340 --GDERIIVFTTNYKE-------------------------RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 340 --~~~~ivI~TTN~~~-------------------------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
-.+.+||+|||... .+.|.++. |||..|.|.+.+.++..+|++..+..
T Consensus 590 vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 590 ADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred cCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 13578999998531 24566665 99999999999999999999988763
No 142
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=1.4e-10 Score=116.62 Aligned_cols=148 Identities=15% Similarity=0.226 Sum_probs=109.1
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--------cEEEEecc-
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--------DIYDMELA- 275 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~--------~v~~l~~~- 275 (455)
+|++++|++.+++.+.+.+. ....+..||||||+|+|||++|+++|+.+.+ +++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~------------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII------------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH------------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 68999999999988877764 2233668999999999999999999998732 34444331
Q ss_pred -ccCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE
Q 047029 276 -SLRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT 348 (455)
Q Consensus 276 -~~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T 348 (455)
...+-.+++.+.... ....|++|||+|.+-. ...+.||..++.- +++.++|++
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----------------~a~naLLK~LEep----p~~t~~il~ 129 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----------------QAQNAFLKTIEEP----PKGVFIILL 129 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH----------------HHHHHHHHHhcCC----CCCeEEEEE
Confidence 112335566666533 2457999999997632 3456788887753 456788888
Q ss_pred cCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 349 TNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 349 TN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
|+.++.+-|.++. |+ .+++|..|+.++....+...+
T Consensus 130 ~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 130 CENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred eCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8889999999998 88 589999999998777666544
No 143
>PRK08181 transposase; Validated
Probab=99.30 E-value=1.9e-11 Score=119.91 Aligned_cols=152 Identities=22% Similarity=0.391 Sum_probs=93.5
Q ss_pred HhhhhHHHHHHHHHHhccceEEEeecCcccccccCCCCCCcccccC--HHHHHHHHHHHH---HHHHhHHHHhhhcCCCC
Q 047029 167 NKYLPYVAERSKAIKETKKVIKLYSLCAADAINLDHPSTFDTLAMD--PVLKQALIDDLD---RFVKRREFYSRVGKAWK 241 (455)
Q Consensus 167 ~~yl~~v~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~tfd~l~g~--~~~k~~l~~~l~---~~l~~~~~~~~~g~~~~ 241 (455)
.+||..+++...+.++.++..+ .+....|+.+.+|+++... +.+.+..+..+. .|+. ..
T Consensus 43 ~e~L~~ll~~E~~~R~~~~~~r-----~lk~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~~~~~-----------~~ 106 (269)
T PRK08181 43 ARFLAAIAEHELAERARRRIER-----HLAEAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGDSWLA-----------KG 106 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHHHHHh-----------cC
Confidence 4577777777766666554331 2333445556777776432 222233333332 2332 25
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-------ChHHHHHHHHhhCCceEEEEecccchhhhhhhc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR-------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQ 311 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~-------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~ 311 (455)
.+++|+||||||||+|+.|+|+++ |+.++.+....+. ....+.+.+....+..+|+|||++....
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~----- 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK----- 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC-----
Confidence 689999999999999999999876 7778777765542 1233455666667889999999987532
Q ss_pred CCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 312 CGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 312 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.......|++.++..... .-+|+|||.+
T Consensus 182 ---------~~~~~~~Lf~lin~R~~~----~s~IiTSN~~ 209 (269)
T PRK08181 182 ---------DQAETSVLFELISARYER----RSILITANQP 209 (269)
T ss_pred ---------CHHHHHHHHHHHHHHHhC----CCEEEEcCCC
Confidence 112233455555544322 3588899965
No 144
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=2.4e-10 Score=116.48 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=108.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------------ 268 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------------ 268 (455)
.||..|+.|+|++++++.+...+.. ...+..+||+||+|+|||++|.++|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 6899999999999999888776651 1235589999999999999999999998541
Q ss_pred ------------------EEEEecc--c-------cCChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCC
Q 047029 269 ------------------IYDMELA--S-------LRSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGG 315 (455)
Q Consensus 269 ------------------v~~l~~~--~-------~~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~ 315 (455)
++.+... . ..+-..++++.... ....|++|||+|.+-.
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------- 155 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------- 155 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH---------
Confidence 1111100 0 00123444433221 2457999999998732
Q ss_pred CCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHh
Q 047029 316 YDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 316 ~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~ 386 (455)
...+.||..++.- +...++|+.|+.++.+.|.++. |+ .+++++.++.++...++...
T Consensus 156 -------~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 -------NAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred -------HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 3456688887753 2456777778889999999988 88 69999999999998888874
No 145
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.29 E-value=6e-12 Score=121.77 Aligned_cols=151 Identities=22% Similarity=0.309 Sum_probs=94.2
Q ss_pred HHHHhccceEEEeec-CcccccccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHH
Q 047029 178 KAIKETKKVIKLYSL-CAADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSS 256 (455)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTs 256 (455)
.++.+.++..++++. +.|.-.+..++.+||++....+..+.++..+..|...- . ....+++|+||||||||+
T Consensus 42 ~~i~~~~~q~~~~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~----~~~~~~~l~G~~GtGKTh 114 (244)
T PRK07952 42 AALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEF---D----GNIASFIFSGKPGTGKNH 114 (244)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHhh---c----cCCceEEEECCCCCCHHH
Confidence 344444444444333 23433344567899999876555555666666665431 1 113589999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeccccCC---------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhh
Q 047029 257 LIAAMANYL---KFDIYDMELASLRS---------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVT 324 (455)
Q Consensus 257 la~alA~~l---~~~v~~l~~~~~~~---------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ 324 (455)
|+.|+|+++ +..++.++..++.. +....+++....+..+|+|||+++... .......
T Consensus 115 La~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~-----------s~~~~~~ 183 (244)
T PRK07952 115 LAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTE-----------SRYEKVI 183 (244)
T ss_pred HHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCC-----------CHHHHHH
Confidence 999999998 77788777765421 123345666667789999999997521 1112223
Q ss_pred HhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 325 LSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 325 ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+ .+.+|.-.. ....+|+|||..
T Consensus 184 l---~~Ii~~Ry~---~~~~tiitSNl~ 205 (244)
T PRK07952 184 I---NQIVDRRSS---SKRPTGMLTNSN 205 (244)
T ss_pred H---HHHHHHHHh---CCCCEEEeCCCC
Confidence 3 334444322 346788999954
No 146
>PRK09087 hypothetical protein; Validated
Probab=99.27 E-value=1.2e-10 Score=111.78 Aligned_cols=164 Identities=14% Similarity=0.181 Sum_probs=98.9
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
+...+..+|++++..+.-.. ....+..+. + ...+.++||||+|+|||||++++++..+..++.. ..+
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~-a~~~l~~~~---------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~ 78 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRA-AVSLVDHWP---------N-WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEI 78 (226)
T ss_pred CCCCCCCChhceeecCchHH-HHHHHHhcc---------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHc
Confidence 34455568999885221111 222222211 1 1133599999999999999999999876654433 221
Q ss_pred CChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCC---
Q 047029 278 RSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKE--- 353 (455)
Q Consensus 278 ~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~--- 353 (455)
. .. .+... ...+|+|||++.+.. .+ .+|++.++.+... + ..+|+|++ .|.
T Consensus 79 ~-~~----~~~~~-~~~~l~iDDi~~~~~--------------~~---~~lf~l~n~~~~~--g-~~ilits~~~p~~~~ 132 (226)
T PRK09087 79 G-SD----AANAA-AEGPVLIEDIDAGGF--------------DE---TGLFHLINSVRQA--G-TSLLMTSRLWPSSWN 132 (226)
T ss_pred c-hH----HHHhh-hcCeEEEECCCCCCC--------------CH---HHHHHHHHHHHhC--C-CeEEEECCCChHHhc
Confidence 1 11 11111 125899999997521 12 2344444444332 2 34455444 443
Q ss_pred CCCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 354 RLDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 354 ~Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
...|+|+. |+. ..+++..|+.+.+.+++++.+...+..+.+++...+
T Consensus 133 ~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~L 181 (226)
T PRK09087 133 VKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYL 181 (226)
T ss_pred cccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23688888 775 889999999999999999999876666666655554
No 147
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=1.6e-10 Score=123.05 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=118.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHH---h--------------HHHH----hhhcCCCCceeEEECCCCCChHHHHH
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVK---R--------------REFY----SRVGKAWKRGYLLYGPPGTGKSSLIA 259 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~---~--------------~~~~----~~~g~~~~rg~LL~GPpGTGKTsla~ 259 (455)
-.|+.|.+|.+++.+-+.++.+|+.|=. + ++.+ ...+.|.++-+||+||||-||||||+
T Consensus 265 y~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAH 344 (877)
T KOG1969|consen 265 YRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAH 344 (877)
T ss_pred cChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHH
Confidence 4578899999999999999999985531 1 0111 22346667889999999999999999
Q ss_pred HHHHHcCCcEEEEeccccCChHHHHHHHHhh----------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 260 AMANYLKFDIYDMELASLRSNSDLRRLLVST----------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 260 alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~----------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
.+|+..|+.+++++.++-.+...+.+.+..+ .+|..|+|||||-... ..+..++
T Consensus 345 ViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~----------------~~Vdvil 408 (877)
T KOG1969|consen 345 VIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR----------------AAVDVIL 408 (877)
T ss_pred HHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcH----------------HHHHHHH
Confidence 9999999999999999988877777665332 4689999999995421 1112222
Q ss_pred hhhh-------ccccc----------CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 330 NFVD-------GLWSS----------CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 330 ~~ld-------g~~~~----------~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
..+. |-... ..=.+-||+.+|... -|||+----+...|.|..|......+-++..+..+
T Consensus 409 slv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE 484 (877)
T KOG1969|consen 409 SLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE 484 (877)
T ss_pred HHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhh
Confidence 2211 11000 001257999999754 37775222677899999998887666666555544
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.26 E-value=4.7e-11 Score=120.88 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=104.8
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------cEE-----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------DIY----- 270 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------~v~----- 270 (455)
..+|..++|+++.|..|+..+.. +.-.|+||.||+|||||++++++++.+.. ++.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 45799999999999998776642 12358999999999999999999888731 111
Q ss_pred -----------------------EEecccc---CChH------HHHHHHHh-----------hCCceEEEEecccchhhh
Q 047029 271 -----------------------DMELASL---RSNS------DLRRLLVS-----------TGNRSILVIEDIDCSIEL 307 (455)
Q Consensus 271 -----------------------~l~~~~~---~~~~------~l~~ll~~-----------~~~~~IL~iDEiD~l~~~ 307 (455)
.+.+..+ .+.+ ++.+.|.. ..+..+|++|||+.+.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~- 158 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD- 158 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH-
Confidence 0000000 0111 12222211 12458999999998743
Q ss_pred hhhcCCCCCCCCcchhhHhhhhhhhhc---------ccccCCCceEEEEEcCCCC-CCCccccCCCceeEEEEeCCCC-H
Q 047029 308 ENRQCGGGYDENNSQVTLSGLLNFVDG---------LWSSCGDERIIVFTTNYKE-RLDPALLRPGRMDMHIHMSYLT-P 376 (455)
Q Consensus 308 ~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~ivI~TTN~~~-~Ld~allRpGR~d~~I~~~~p~-~ 376 (455)
.+.+.|++.|+. .....+...++|+|.|..+ .+.++|+. ||.++|.+++|+ .
T Consensus 159 ---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~ 221 (350)
T CHL00081 159 ---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDP 221 (350)
T ss_pred ---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCCh
Confidence 455667777743 2222234566777777655 69999999 999999999998 5
Q ss_pred HHHHHHHHHhhc
Q 047029 377 GGFKILAFNYLK 388 (455)
Q Consensus 377 ~~~~~L~~~~l~ 388 (455)
+.+.+|+++...
T Consensus 222 ~~e~~il~~~~~ 233 (350)
T CHL00081 222 ELRVKIVEQRTS 233 (350)
T ss_pred HHHHHHHHhhhc
Confidence 888898887644
No 149
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.24 E-value=4.9e-11 Score=120.60 Aligned_cols=153 Identities=22% Similarity=0.293 Sum_probs=102.8
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-------CcEE-------
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-------FDIY------- 270 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-------~~v~------- 270 (455)
.|..++|++++|..++-.+.. +...+++|.||||||||++++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 588999999999887655432 1134799999999999999999998872 1111
Q ss_pred ------E------------------Eecc------ccCChHHHHHHHH-----------hhCCceEEEEecccchhhhhh
Q 047029 271 ------D------------------MELA------SLRSNSDLRRLLV-----------STGNRSILVIEDIDCSIELEN 309 (455)
Q Consensus 271 ------~------------------l~~~------~~~~~~~l~~ll~-----------~~~~~~IL~iDEiD~l~~~~~ 309 (455)
. .++. .+.+.-++.+.+. ...++.+|+||||+.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0 0110 1112223333321 113458999999998743
Q ss_pred hcCCCCCCCCcchhhHhhhhhhhhc---------ccccCCCceEEEEEcCCCC-CCCccccCCCceeEEEEeCCCCH-HH
Q 047029 310 RQCGGGYDENNSQVTLSGLLNFVDG---------LWSSCGDERIIVFTTNYKE-RLDPALLRPGRMDMHIHMSYLTP-GG 378 (455)
Q Consensus 310 ~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~ivI~TTN~~~-~Ld~allRpGR~d~~I~~~~p~~-~~ 378 (455)
.+.+.|++.|+. .....+...++|+|+|..+ .+.++|+. ||.+++.+++|.. ++
T Consensus 146 -------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 146 -------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 455667777742 2222334567777888655 68999999 9999999999986 78
Q ss_pred HHHHHHHhhc
Q 047029 379 FKILAFNYLK 388 (455)
Q Consensus 379 ~~~L~~~~l~ 388 (455)
+.+++++...
T Consensus 211 r~eIL~~~~~ 220 (337)
T TIGR02030 211 RVEIVERRTE 220 (337)
T ss_pred HHHHHHhhhh
Confidence 8888887544
No 150
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.24 E-value=8.7e-11 Score=120.47 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=50.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcC-CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
.++|+++.|+.+...+..-.++...-..... ..++++||+||||||||++|+++|+.++.+++.++.+.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 4789999999998777543222211111111 12579999999999999999999999999999998754
No 151
>PRK08116 hypothetical protein; Validated
Probab=99.23 E-value=7.4e-11 Score=116.01 Aligned_cols=149 Identities=21% Similarity=0.326 Sum_probs=91.8
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC-
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS- 279 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~- 279 (455)
.+|++....+.. +.....+..+... |.... ..++|++||||||||||+|+.|+|+++ +.+++.++...+..
T Consensus 82 ~tFdnf~~~~~~-~~a~~~a~~y~~~---~~~~~-~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 82 STFENFLFDKGS-EKAYKIARKYVKK---FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred cchhcccCChHH-HHHHHHHHHHHHH---HHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 467777654443 2234444444432 11111 224689999999999999999999987 67888877655311
Q ss_pred ---------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC
Q 047029 280 ---------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN 350 (455)
Q Consensus 280 ---------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN 350 (455)
......++....+..+|+|||++... ........|.+.+|.... .+..+|+|||
T Consensus 157 i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~--------------~t~~~~~~l~~iin~r~~---~~~~~IiTsN 219 (268)
T PRK08116 157 IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAER--------------DTEWAREKVYNIIDSRYR---KGLPTIVTTN 219 (268)
T ss_pred HHHHHhccccccHHHHHHHhcCCCEEEEecccCCC--------------CCHHHHHHHHHHHHHHHH---CCCCEEEECC
Confidence 11223445555667899999997421 112344566777776543 2356888999
Q ss_pred CC-CC----CCccccCCCce---eEEEEeCCCCH
Q 047029 351 YK-ER----LDPALLRPGRM---DMHIHMSYLTP 376 (455)
Q Consensus 351 ~~-~~----Ld~allRpGR~---d~~I~~~~p~~ 376 (455)
.+ +. ++.++.. |+ ...|.+.-++.
T Consensus 220 ~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 220 LSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred CCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 64 22 5667776 63 45567766664
No 152
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.23 E-value=1.2e-10 Score=119.34 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=51.0
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhc-CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
.++|+++.|+.+.-.+..-.++...-..++ -..|+++||+||||||||++++++|+.++.+++.++.+.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~ 82 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 82 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence 478889999988777664333322111111 223589999999999999999999999999999998653
No 153
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.22 E-value=1.9e-10 Score=106.94 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=90.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCC------------------------cEEEEecccc-CChHHHHHHHHhh----
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DIYDMELASL-RSNSDLRRLLVST---- 290 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~------------------------~v~~l~~~~~-~~~~~l~~ll~~~---- 290 (455)
.+..||||||||+|||++++++|+.+.. ++..+..... .+-..++.++...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 3568999999999999999999999743 2333332211 2234565555433
Q ss_pred --CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 291 --GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 291 --~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
..+.|++|||+|.+.. ...+.||..|+.. +...++|++||.+..+.+++.+ |+ ..
T Consensus 93 ~~~~~kviiide~~~l~~----------------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~s--r~-~~ 149 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE----------------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRS--RC-QV 149 (188)
T ss_pred ccCCeEEEEEechhhhCH----------------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHh--hc-EE
Confidence 2467999999998732 3456688888763 2457788888888999999998 77 48
Q ss_pred EEeCCCCHHHHHHHHHHh
Q 047029 369 IHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~ 386 (455)
+++..|+.++...++...
T Consensus 150 ~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eeCCCCCHHHHHHHHHHc
Confidence 999999999988877765
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=3.8e-10 Score=127.24 Aligned_cols=158 Identities=17% Similarity=0.299 Sum_probs=109.7
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC---C-ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW---K-RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR 278 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~-rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~ 278 (455)
++.++|++...+.|.+.+..... |... | ..+||+||||||||++|+++|+.+ +..++.++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 55788998888888887764321 2211 2 258999999999999999999988 4568888887653
Q ss_pred ChHHHHHHH---------------H---hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cc-c
Q 047029 279 SNSDLRRLL---------------V---STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WS-S 338 (455)
Q Consensus 279 ~~~~l~~ll---------------~---~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~-~ 338 (455)
......+++ . .....+||+||||+.+-+ ...+.|++.+|.- .. .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~----------------~v~~~Ll~ile~g~l~d~ 702 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP----------------DVFNILLQVLDDGRLTDG 702 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH----------------HHHHHHHHHHhhCceecC
Confidence 322222222 1 112348999999997632 3566777777532 11 1
Q ss_pred C-----CCceEEEEEcCCC-------------------------CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 339 C-----GDERIIVFTTNYK-------------------------ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 339 ~-----~~~~ivI~TTN~~-------------------------~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
. -.+.+||+|||.. ..+.|+|+. |+|..+.|.+++.+....|++.++.
T Consensus 703 ~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1346899999962 124567787 9999999999999999999998885
Q ss_pred c
Q 047029 389 I 389 (455)
Q Consensus 389 ~ 389 (455)
.
T Consensus 781 ~ 781 (857)
T PRK10865 781 R 781 (857)
T ss_pred H
Confidence 4
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.19 E-value=2.4e-10 Score=118.33 Aligned_cols=135 Identities=16% Similarity=0.285 Sum_probs=80.4
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc-----EEEEeccc----
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD-----IYDMELAS---- 276 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~-----v~~l~~~~---- 276 (455)
++++.+.++..+.+...+. .+++++|+||||||||++|+++|+.+... +..+..+.
T Consensus 174 l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 4455555555555544433 16799999999999999999999988431 11111111
Q ss_pred --c------C------ChHHHHHHHHhh----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh-----
Q 047029 277 --L------R------SNSDLRRLLVST----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD----- 333 (455)
Q Consensus 277 --~------~------~~~~l~~ll~~~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld----- 333 (455)
+ . ....+.+++..+ ..+.|||||||+..-. ...+..++..|+
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani---------------~kiFGel~~lLE~~~rg 303 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL---------------SKVFGEVMMLMEHDKRG 303 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH---------------HHhhhhhhhhccccccc
Confidence 0 0 011223333232 3579999999997521 011111222121
Q ss_pred -------------cccccCCCceEEEEEcCCCC----CCCccccCCCceeEEEEeCC
Q 047029 334 -------------GLWSSCGDERIIVFTTNYKE----RLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 334 -------------g~~~~~~~~~ivI~TTN~~~----~Ld~allRpGR~d~~I~~~~ 373 (455)
+-.-..+.++.||+|+|..| .+|.||+| ||.+ |++.+
T Consensus 304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred cccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 10112357799999999887 79999999 9954 66654
No 156
>PRK06526 transposase; Provisional
Probab=99.19 E-value=3.9e-11 Score=116.96 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=90.4
Q ss_pred HHhhhhHHHHHHHHHHhccceEEEeecCcccccccCCCCCCcccccC--HHHHHHHHHHHH--HHHHhHHHHhhhcCCCC
Q 047029 166 LNKYLPYVAERSKAIKETKKVIKLYSLCAADAINLDHPSTFDTLAMD--PVLKQALIDDLD--RFVKRREFYSRVGKAWK 241 (455)
Q Consensus 166 l~~yl~~v~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~tfd~l~g~--~~~k~~l~~~l~--~~l~~~~~~~~~g~~~~ 241 (455)
..+||..+++.+.+.++.++..+. .+...|+.+.+|+++... +.+.+..+..+. .|+.. +
T Consensus 35 ~~e~l~~ll~~E~~~R~~~~~~~~-----lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~-----------~ 98 (254)
T PRK06526 35 HEEFLAACLQREVAARESHGGEGR-----IRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTG-----------K 98 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchhhc-----------C
Confidence 345777777777776666554322 223345556666655432 233333333322 23322 5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-------ChHHHHHHHHhhCCceEEEEecccchhhhhhhc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR-------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQ 311 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~-------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~ 311 (455)
.+++|+||||||||+|+.+++.++ |..++......+. ....+.+.+....+..+|+|||++....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~----- 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPF----- 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCC-----
Confidence 689999999999999999999986 6666655544321 1223444555566788999999997531
Q ss_pred CCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 312 CGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 312 ~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.......|.+.++..... ..+|+|||.+
T Consensus 174 ---------~~~~~~~L~~li~~r~~~----~s~IitSn~~ 201 (254)
T PRK06526 174 ---------EPEAANLFFQLVSSRYER----ASLIVTSNKP 201 (254)
T ss_pred ---------CHHHHHHHHHHHHHHHhc----CCEEEEcCCC
Confidence 112223344555443322 2478899965
No 157
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.1e-11 Score=125.55 Aligned_cols=153 Identities=30% Similarity=0.438 Sum_probs=120.1
Q ss_pred HHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc------CChHHHHHHHHhhC--CceEEEE
Q 047029 227 VKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL------RSNSDLRRLLVSTG--NRSILVI 298 (455)
Q Consensus 227 l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~------~~~~~l~~ll~~~~--~~~IL~i 298 (455)
+..+..++..+..+++|++++||||||||++++++|+. +.....++.... .+...++.++.... .++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 34567788899999999999999999999999999999 544444444332 23456666665543 5799999
Q ss_pred ecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHH
Q 047029 299 EDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGG 378 (455)
Q Consensus 299 DEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~ 378 (455)
||+|.+.+.+.. ..........+.++..+|++. .+. ++++..||.+..+|+++.+||||+..+.+..|+...
T Consensus 83 d~~~~~~~~~~~-----~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 83 DEIDALAPKRSS-----DQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred chhhhcccCccc-----cccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 999998763322 223345677899999999997 445 888889999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 047029 379 FKILAFNYLK 388 (455)
Q Consensus 379 ~~~L~~~~l~ 388 (455)
+.++......
T Consensus 155 ~~ei~~~~~~ 164 (494)
T COG0464 155 RLEILQIHTR 164 (494)
T ss_pred HHHHHHHHHh
Confidence 8777776553
No 158
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.18 E-value=1.9e-11 Score=105.66 Aligned_cols=106 Identities=27% Similarity=0.297 Sum_probs=63.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHH--HHhh-------C---CceEEEEecccchhhhhhh
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRL--LVST-------G---NRSILVIEDIDCSIELENR 310 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~l--l~~~-------~---~~~IL~iDEiD~l~~~~~~ 310 (455)
.+||+|+||+|||++|+++|+.++.++..+.++.-...+++.-. +... . -..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrapp---- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPP---- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-H----
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCH----
Confidence 48999999999999999999999999999987642222222211 0000 0 136999999997643
Q ss_pred cCCCCCCCCcchhhHhhhhhhhh-------cccccCCCceEEEEEcCCCC-----CCCccccCCCcee
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVD-------GLWSSCGDERIIVFTTNYKE-----RLDPALLRPGRMD 366 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ld-------g~~~~~~~~~ivI~TTN~~~-----~Ld~allRpGR~d 366 (455)
.+.+.||+.|. |..-..+...+||+|-|+.+ .|++|++. ||-
T Consensus 77 ------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 77 ------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 67888998884 33344566788999999876 68899988 874
No 159
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.18 E-value=1.2e-10 Score=116.50 Aligned_cols=97 Identities=22% Similarity=0.347 Sum_probs=69.8
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR- 278 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~- 278 (455)
..+|+++...+.-+..+......|+..- .. | +..+|++||||+|||||+|+.|+|+++ |..+..+....+.
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~---~~-~-~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~ 197 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAY---PP-G-EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR 197 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHh---hc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH
Confidence 4688888876655555555555666532 11 1 246799999999999999999999998 7777777765531
Q ss_pred ------ChHHHHHHHHhhCCceEEEEecccch
Q 047029 279 ------SNSDLRRLLVSTGNRSILVIEDIDCS 304 (455)
Q Consensus 279 ------~~~~l~~ll~~~~~~~IL~iDEiD~l 304 (455)
....+.+.+....+..+|+|||++.-
T Consensus 198 ~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 198 ELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 12235566677778899999999863
No 160
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=8.9e-10 Score=112.75 Aligned_cols=192 Identities=18% Similarity=0.216 Sum_probs=127.4
Q ss_pred cccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-----cEEEEeccccCChHHH
Q 047029 209 LAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-----DIYDMELASLRSNSDL 283 (455)
Q Consensus 209 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-----~v~~l~~~~~~~~~~l 283 (455)
+.+-++..+++...+..++.+.. |.++++|||||||||.+++.+++++.- .+++++|....+...+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~---------p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGER---------PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCC---------CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 77777888888887776665422 456999999999999999999999843 3788998776443221
Q ss_pred -H------------------------HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 284 -R------------------------RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 284 -~------------------------~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
. +.+.......||++||+|.+.. .....+-.|+...+..
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~-------------~~~~~LY~L~r~~~~~--- 153 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD-------------KDGEVLYSLLRAPGEN--- 153 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc-------------ccchHHHHHHhhcccc---
Confidence 1 1222223457999999999864 1113333444333322
Q ss_pred CCCceEEEEEcCCC---CCCCccccCCCcee-EEEEeCCCCHHHHHHHHHHhhcc--cCCCchHHHHHhhccccCchhHH
Q 047029 339 CGDERIIVFTTNYK---ERLDPALLRPGRMD-MHIHMSYLTPGGFKILAFNYLKI--KSHSMFDEIEELIKEVEVTPAEE 412 (455)
Q Consensus 339 ~~~~~ivI~TTN~~---~~Ld~allRpGR~d-~~I~~~~p~~~~~~~L~~~~l~~--~~~~l~~ei~~ll~~~~~tpa~~ 412 (455)
...+.+|+.+|.. +.+||.+.+ ++. .+|.|++.+.+|...|+...... ....+.+++-+++....
T Consensus 154 -~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~------ 224 (366)
T COG1474 154 -KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV------ 224 (366)
T ss_pred -ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH------
Confidence 2457888888854 678888886 332 45899999999999999988763 34555555555554211
Q ss_pred HhccCCHHHHHHHHHHHHHHhh
Q 047029 413 FMKSEDADVALNGLVDFLLRKK 434 (455)
Q Consensus 413 l~~~~~~~~al~~l~~~l~~~~ 434 (455)
.-.+.|+..|++-+..+.+.+.
T Consensus 225 a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 225 AAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHcCccHHHHHHHHHHHHHHHH
Confidence 1123377777777766665544
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=3.9e-10 Score=126.95 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=107.5
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC---CCce-eEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA---WKRG-YLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rg-~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
+.|+|+++..+.|.+.+..... |.. .|.| +||+||||||||.+|+++|..+ ...++.++++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~--------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA--------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc--------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 4678888888888887764322 221 2444 8999999999999999999998 45678888776522
Q ss_pred h-------------------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc--cc
Q 047029 280 N-------------------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW--SS 338 (455)
Q Consensus 280 ~-------------------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~~ 338 (455)
. ..+...+.. ...+||+|||||.+-+ ...+.|++.+|... +.
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-~p~svvllDEieka~~----------------~v~~~Llq~ld~g~l~d~ 700 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEGGVLTEAVRR-KPYSVVLLDEVEKAHP----------------DVLELFYQVFDKGVMEDG 700 (852)
T ss_pred hhhhccccCCCCCcccccccchHHHHHHh-CCCcEEEEechhhcCH----------------HHHHHHHHHhhcceeecC
Confidence 1 123333333 4569999999996522 34566777776332 11
Q ss_pred C-----CCceEEEEEcCCCC-----------------------------CCCccccCCCceeEEEEeCCCCHHHHHHHHH
Q 047029 339 C-----GDERIIVFTTNYKE-----------------------------RLDPALLRPGRMDMHIHMSYLTPGGFKILAF 384 (455)
Q Consensus 339 ~-----~~~~ivI~TTN~~~-----------------------------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~ 384 (455)
. -.+.+||+|||... .+.|+++. |++ .|.|...+.++...|+.
T Consensus 701 ~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~ 777 (852)
T TIGR03345 701 EGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVR 777 (852)
T ss_pred CCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHH
Confidence 1 14579999999421 14566666 998 78999999999999998
Q ss_pred Hhhcc
Q 047029 385 NYLKI 389 (455)
Q Consensus 385 ~~l~~ 389 (455)
..+..
T Consensus 778 ~~L~~ 782 (852)
T TIGR03345 778 LKLDR 782 (852)
T ss_pred HHHHH
Confidence 87753
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.15 E-value=5.1e-10 Score=126.49 Aligned_cols=155 Identities=17% Similarity=0.274 Sum_probs=108.1
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC----CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
..++|++...+.+.+.+..... |.. +...+||+||||||||++|+++|..+ +.+++.++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~--------gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA--------GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc--------cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 4678888888888887764321 221 23359999999999999999999988 46788888876533
Q ss_pred hHHHH-------------------HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-c-c
Q 047029 280 NSDLR-------------------RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-S-S 338 (455)
Q Consensus 280 ~~~l~-------------------~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~-~ 338 (455)
..... ..+. ....+||+||||+.+-+ ...+.|++.+|.-. . .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~-~~p~~vlllDeieka~~----------------~v~~~Ll~~l~~g~l~d~ 699 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVR-RKPYSVVLFDEVEKAHP----------------DVFNVLLQVLDDGRLTDG 699 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHH-cCCCcEEEEeccccCCH----------------HHHHHHHHHHhcCceecC
Confidence 22222 2221 23457999999997632 45667777775321 1 1
Q ss_pred C-----CCceEEEEEcCCCC-------------------------CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 339 C-----GDERIIVFTTNYKE-------------------------RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 339 ~-----~~~~ivI~TTN~~~-------------------------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
. -.+.+||+|||... .+.|.|+. |+|..|.|.+++.+....|+...+.
T Consensus 700 ~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 700 QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 1 14578999999621 13355665 9999999999999999999888775
No 163
>PRK12377 putative replication protein; Provisional
Probab=99.14 E-value=3.4e-10 Score=109.84 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=83.6
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC-
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS- 279 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~- 279 (455)
.+|++.....+..+.++..+..+...- .. ...+++|+||||||||+|+.|+|+.+ +..+..+...++..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~---~~----~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADEL---MT----GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHH---Hh----cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 478888654444444545444444321 11 14689999999999999999999998 67777776655421
Q ss_pred -------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 280 -------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 280 -------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.....+++....+..+|+|||++.... .. .....|.+.+|.... ...-+|+|||..
T Consensus 144 l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~-----------s~---~~~~~l~~ii~~R~~---~~~ptiitSNl~ 206 (248)
T PRK12377 144 LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRE-----------TK---NEQVVLNQIIDRRTA---SMRSVGMLTNLN 206 (248)
T ss_pred HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCC-----------CH---HHHHHHHHHHHHHHh---cCCCEEEEcCCC
Confidence 112345666677889999999986421 11 223345555555432 235688999954
Q ss_pred -----CCCCccccC
Q 047029 353 -----ERLDPALLR 361 (455)
Q Consensus 353 -----~~Ld~allR 361 (455)
+.+..+++.
T Consensus 207 ~~~l~~~~~~ri~d 220 (248)
T PRK12377 207 HEAMSTLLGERVMD 220 (248)
T ss_pred HHHHHHHhhHHHHH
Confidence 234455555
No 164
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.13 E-value=3.6e-10 Score=117.97 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=81.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC--cEEEEecc-----ccCChHHHHH-----HHHh-----hCCceEEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELA-----SLRSNSDLRR-----LLVS-----TGNRSILVIEDIDC 303 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~-----~~~~~~~l~~-----ll~~-----~~~~~IL~iDEiD~ 303 (455)
...+||+||||||||++|+++|...+. ++..+.+. ++.+...+.. .|.. .....+||+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 568999999999999999999998743 22222221 1111111111 1111 11234999999986
Q ss_pred hhhhhhhcCCCCCCCCcchhhHhhhhhhhh-cccccC-----CCceEEEEEcCCCC---CCCccccCCCceeEEEEeCCC
Q 047029 304 SIELENRQCGGGYDENNSQVTLSGLLNFVD-GLWSSC-----GDERIIVFTTNYKE---RLDPALLRPGRMDMHIHMSYL 374 (455)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~-----~~~~ivI~TTN~~~---~Ld~allRpGR~d~~I~~~~p 374 (455)
+. ..+.+.||..|. +..... -+.+++++|||... ...+|+.. ||-++|.+++|
T Consensus 119 as----------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 119 AG----------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred CC----------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 53 367788898884 332221 12367788888432 23358999 99999999999
Q ss_pred C-HHHHHHHHHHh
Q 047029 375 T-PGGFKILAFNY 386 (455)
Q Consensus 375 ~-~~~~~~L~~~~ 386 (455)
+ .+++..|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 7 56678888764
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.6e-09 Score=109.74 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=104.2
Q ss_pred CCccccc-CHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC----------------
Q 047029 205 TFDTLAM-DPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF---------------- 267 (455)
Q Consensus 205 tfd~l~g-~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~---------------- 267 (455)
.|++|.| ++.+++.+.+.+. ....+..||||||+|+||+++|+++|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778888 7777777766554 1233668999999999999999999998732
Q ss_pred --------cEEEEecccc-CChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhh
Q 047029 268 --------DIYDMELASL-RSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFV 332 (455)
Q Consensus 268 --------~v~~l~~~~~-~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~l 332 (455)
++..+....- .+-.+++.+.... ....|++|||+|.+-. ...+.||..+
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~----------------~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA----------------SAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----------------HHHHHHHHHh
Confidence 2333322211 1234566555332 2457999999998732 3567788888
Q ss_pred hcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 047029 333 DGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 333 dg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~ 385 (455)
+.- ++..++|++|+.+..|-|++++ |+ .++++..|+.++....+..
T Consensus 135 EEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 763 3567888899999999999999 88 6799999999887666653
No 166
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.13 E-value=1e-09 Score=110.95 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=50.6
Q ss_pred CCc-ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------cEEEEec
Q 047029 205 TFD-TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-------DIYDMEL 274 (455)
Q Consensus 205 tfd-~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-------~v~~l~~ 274 (455)
-|+ ++.|.++.++++++.+.....+ +...++.++|.|||||||||+|+++|+.++. ++|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g-------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQG-------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 8999999999998877654421 1233678999999999999999999999965 7887766
No 167
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.13 E-value=5.5e-10 Score=125.85 Aligned_cols=155 Identities=21% Similarity=0.305 Sum_probs=106.2
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC---C-ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW---K-RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~-rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
+.|+|+++..+.|.+.+.... .|... | ..+||+||+|||||++|+++|+.+ +.+++.+++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~ 580 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRAR--------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME 580 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHh--------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence 467788888888877765322 22211 2 248999999999999999999998 46788888776522
Q ss_pred hH-------------------HHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc--cc
Q 047029 280 NS-------------------DLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW--SS 338 (455)
Q Consensus 280 ~~-------------------~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~--~~ 338 (455)
.. .+...+.. ...+||+|||||.+-+ ...+.|+..+|.-. ..
T Consensus 581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~~~-~p~~VvllDeieka~~----------------~v~~~Llq~le~g~~~d~ 643 (821)
T CHL00095 581 KHTVSKLIGSPPGYVGYNEGGQLTEAVRK-KPYTVVLFDEIEKAHP----------------DIFNLLLQILDDGRLTDS 643 (821)
T ss_pred cccHHHhcCCCCcccCcCccchHHHHHHh-CCCeEEEECChhhCCH----------------HHHHHHHHHhccCceecC
Confidence 11 23222222 2348999999997632 45677788877421 11
Q ss_pred C-----CCceEEEEEcCCCCC-------------------------------------CCccccCCCceeEEEEeCCCCH
Q 047029 339 C-----GDERIIVFTTNYKER-------------------------------------LDPALLRPGRMDMHIHMSYLTP 376 (455)
Q Consensus 339 ~-----~~~~ivI~TTN~~~~-------------------------------------Ld~allRpGR~d~~I~~~~p~~ 376 (455)
. -.+.+||+|||.... +.|.++. |+|..|.|.+.+.
T Consensus 644 ~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~ 721 (821)
T CHL00095 644 KGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTK 721 (821)
T ss_pred CCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCH
Confidence 1 146799999994311 1244555 9999999999999
Q ss_pred HHHHHHHHHhhc
Q 047029 377 GGFKILAFNYLK 388 (455)
Q Consensus 377 ~~~~~L~~~~l~ 388 (455)
++..+|+...+.
T Consensus 722 ~~l~~Iv~~~l~ 733 (821)
T CHL00095 722 NDVWEIAEIMLK 733 (821)
T ss_pred HHHHHHHHHHHH
Confidence 999999988775
No 168
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=1.5e-10 Score=106.25 Aligned_cols=109 Identities=24% Similarity=0.423 Sum_probs=75.6
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCC----cEEEEeccccCC----hHHHHHHHHhhC------CceEEEEecccchh
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKF----DIYDMELASLRS----NSDLRRLLVSTG------NRSILVIEDIDCSI 305 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~----~v~~l~~~~~~~----~~~l~~ll~~~~------~~~IL~iDEiD~l~ 305 (455)
|...+||.||+|||||.+|+++|+.+.. +++.+|++.+.. ...+.+++.... ...||+|||||.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 3457999999999999999999999996 999999999876 455555554332 24699999999875
Q ss_pred hhhhhcCCCCCCCCcchhhHhhhhhhhhccccc--CC-----CceEEEEEcCCCC
Q 047029 306 ELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS--CG-----DERIIVFTTNYKE 353 (455)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--~~-----~~~ivI~TTN~~~ 353 (455)
+. .+...+......++.||..||+-.-. .+ .+.++|+|+|.-.
T Consensus 82 ~~-----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PS-----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HT-----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc-----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 41 11111222335567788888743211 11 4579999999643
No 169
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.1e-09 Score=106.83 Aligned_cols=148 Identities=20% Similarity=0.255 Sum_probs=107.1
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-----------------
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF----------------- 267 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~----------------- 267 (455)
.|++|+|++.+++.+.+.+.. ...+..|||+||+|+||+++|.++|+.+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 488999999999988887752 122569999999999999999999998732
Q ss_pred -cEEEEecccc-----------------------CChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCC
Q 047029 268 -DIYDMELASL-----------------------RSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYD 317 (455)
Q Consensus 268 -~v~~l~~~~~-----------------------~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~ 317 (455)
+++.+..... -.-..++++.... ....|++||++|.+-.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 2232222100 0012445554332 2468999999998732
Q ss_pred CCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 318 ENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 318 ~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
...+.||..|+.- + +.++|++|+.++.|-|.+++ |+ ..++|+.++.++..+.+.....
T Consensus 139 -----~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 139 -----AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred -----HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 3456788887753 2 45778888899999999999 88 6899999999998888886643
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.8e-09 Score=106.73 Aligned_cols=123 Identities=20% Similarity=0.292 Sum_probs=92.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC------------------------cEEEEeccc---cCChHHHHHHHHhh---
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DIYDMELAS---LRSNSDLRRLLVST--- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~------------------------~v~~l~~~~---~~~~~~l~~ll~~~--- 290 (455)
+..|||+||+|+||+++|.++|+.+.+ +++.+.... ..+-.+++++....
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 568999999999999999999999843 455554321 12345667665433
Q ss_pred ---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeE
Q 047029 291 ---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDM 367 (455)
Q Consensus 291 ---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~ 367 (455)
....|++||++|.+-. ...+.||..++.- +++.++|++|+.++.|.|.+++ |+.
T Consensus 102 ~~~~~~kv~iI~~a~~m~~----------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR----------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred cccCCCeEEEECChhhCCH----------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHh--hce-
Confidence 2457999999998732 4567788887763 3568899999999999999999 984
Q ss_pred EEEeCCCCHHHHHHHHHHh
Q 047029 368 HIHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 368 ~I~~~~p~~~~~~~L~~~~ 386 (455)
.+.|+.|+.++....+...
T Consensus 159 ~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQA 177 (328)
T ss_pred eeeCCCcCHHHHHHHHHHh
Confidence 5999999998877666554
No 171
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.09 E-value=3.5e-10 Score=105.97 Aligned_cols=140 Identities=22% Similarity=0.314 Sum_probs=66.7
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-cEE-EEecccc-----
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-DIY-DMELASL----- 277 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-~v~-~l~~~~~----- 277 (455)
.|.+|.|++..|+.+.-... | ..++||+||||||||++|++++..|.- ..- .++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 48899999999998865543 2 469999999999999999999987721 000 0011111
Q ss_pred ----------------CChHHHHHHHHh----------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 278 ----------------RSNSDLRRLLVS----------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 278 ----------------~~~~~l~~ll~~----------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
........++.. ...+.|||+||+-.+- ..++..|+..
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~----------------~~vld~Lr~p 129 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD----------------RSVLDALRQP 129 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-----------------HHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC----------------HHHHHHHHHH
Confidence 111222333311 1346899999997552 4667777777
Q ss_pred hhcc---------cccCCCceEEEEEcCCC-----------------------CCCCccccCCCceeEEEEeCCCCHH
Q 047029 332 VDGL---------WSSCGDERIIVFTTNYK-----------------------ERLDPALLRPGRMDMHIHMSYLTPG 377 (455)
Q Consensus 332 ldg~---------~~~~~~~~ivI~TTN~~-----------------------~~Ld~allRpGR~d~~I~~~~p~~~ 377 (455)
++.- .-..+.+.++|+|+|.= .+|...|+. |||++|.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 7522 11123446788888732 356677777 88888888776654
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-09 Score=119.22 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=114.5
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCC----ceeEEECCCCCChHHHHHHHHHHcC---CcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWK----RGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~----rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~~~~~~ 279 (455)
..++|+++..+.+.+.+.. .+.|+..| ..+||.||+|+|||-||+++|..+. -.++.+|+++...
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4678888888888777763 23344322 2578899999999999999999995 7899999998865
Q ss_pred hHHHHHHHHhh------------------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc--cccC
Q 047029 280 NSDLRRLLVST------------------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL--WSSC 339 (455)
Q Consensus 280 ~~~l~~ll~~~------------------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--~~~~ 339 (455)
...+.+++-.- ...|||+||||+..- ...++-||+.||.- .+..
T Consensus 563 kHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH----------------pdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH----------------PDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC----------------HHHHHHHHHHhcCCeeecCC
Confidence 55555554221 124899999999753 25678899999732 2222
Q ss_pred C-----CceEEEEEcCCC----------------------------CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHh
Q 047029 340 G-----DERIIVFTTNYK----------------------------ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 340 ~-----~~~ivI~TTN~~----------------------------~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~ 386 (455)
| .+.+||||||-- ....|+++. |+|-.|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 2 346899999932 013455566 99999999999999999999988
Q ss_pred hcc
Q 047029 387 LKI 389 (455)
Q Consensus 387 l~~ 389 (455)
+..
T Consensus 705 L~~ 707 (786)
T COG0542 705 LNR 707 (786)
T ss_pred HHH
Confidence 763
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=6e-10 Score=95.70 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=71.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc---EEEEeccccCC--------------------hHHHHHHHHhhC--CceE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASLRS--------------------NSDLRRLLVSTG--NRSI 295 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~~~--------------------~~~l~~ll~~~~--~~~I 295 (455)
++.++|+||||||||++++++|+.+... ++.++...... .......+.... .+.|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999765 77777664321 223333333332 3599
Q ss_pred EEEecccchhhhhhhcCCCCCCCCcchhhHhhh--hhhhhcccccCCCceEEEEEcCC-CCCCCccccCCCceeEEEEeC
Q 047029 296 LVIEDIDCSIELENRQCGGGYDENNSQVTLSGL--LNFVDGLWSSCGDERIIVFTTNY-KERLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 296 L~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~L--L~~ldg~~~~~~~~~ivI~TTN~-~~~Ld~allRpGR~d~~I~~~ 372 (455)
|+|||++.+.... ........ ....... .......+|+++|. ....+..+.+ |++.++.+.
T Consensus 82 iiiDei~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (148)
T smart00382 82 LILDEITSLLDAE------------QEALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLL 145 (148)
T ss_pred EEEECCcccCCHH------------HHHHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhh--ccceEEEec
Confidence 9999999875310 00000000 0000111 11245788888886 3334444445 888888876
Q ss_pred CC
Q 047029 373 YL 374 (455)
Q Consensus 373 ~p 374 (455)
.+
T Consensus 146 ~~ 147 (148)
T smart00382 146 LI 147 (148)
T ss_pred CC
Confidence 54
No 174
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.08 E-value=2.3e-09 Score=110.10 Aligned_cols=180 Identities=16% Similarity=0.258 Sum_probs=110.0
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEE
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDM 272 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l 272 (455)
..+.+..|||+++..+.-.... .....+...+ |. .-.-++||||+|.|||+|++|++++. +..++++
T Consensus 78 ~~l~~~ytFdnFv~g~~N~~A~-aa~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 78 SGLNPKYTFDNFVVGPSNRLAY-AAAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred ccCCCCCchhheeeCCchHHHH-HHHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 3456667999987654433222 1222222222 22 24569999999999999999999988 2345555
Q ss_pred eccccCC-------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEE
Q 047029 273 ELASLRS-------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERII 345 (455)
Q Consensus 273 ~~~~~~~-------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~iv 345 (455)
....... +..+.+.=... +-.+++||||+.+.. . ..+..++...+..+... +..||
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~g-----------k---~~~qeefFh~FN~l~~~--~kqIv 212 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAG-----------K---ERTQEEFFHTFNALLEN--GKQIV 212 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcC-----------C---hhHHHHHHHHHHHHHhc--CCEEE
Confidence 4333210 01111111222 567999999998853 1 12234444444444433 33455
Q ss_pred EEEcCCCCC---CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 346 VFTTNYKER---LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 346 I~TTN~~~~---Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
+.+-..|.. ++|.|.+ ||. ..+.+..|+.+.+..++.......+..+.+++...+..
T Consensus 213 ltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~ 274 (408)
T COG0593 213 LTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAK 274 (408)
T ss_pred EEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 444445654 4588888 765 67799999999999999998877777777777666544
No 175
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.07 E-value=3.1e-10 Score=124.24 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=102.2
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-------------------
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------------------- 265 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l------------------- 265 (455)
.|..|+|++.+|..+.-.+. .+ .-.||||+||||||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av----~~---------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV----DP---------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhh----CC---------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 47899999988877654332 11 12479999999999999999999998
Q ss_pred ----------------CCcEEEEecccc----CChHHHHHHHH-----------hhCCceEEEEecccchhhhhhhcCCC
Q 047029 266 ----------------KFDIYDMELASL----RSNSDLRRLLV-----------STGNRSILVIEDIDCSIELENRQCGG 314 (455)
Q Consensus 266 ----------------~~~v~~l~~~~~----~~~~~l~~ll~-----------~~~~~~IL~iDEiD~l~~~~~~~~~~ 314 (455)
..+++.+.++.. .+.-++.+.+. ......|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 235555544321 12222333331 112457999999998743
Q ss_pred CCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCC-CCCCccccCCCceeEEEEeCCCC-HHHHHHHH
Q 047029 315 GYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYK-ERLDPALLRPGRMDMHIHMSYLT-PGGFKILA 383 (455)
Q Consensus 315 ~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~-~~Ld~allRpGR~d~~I~~~~p~-~~~~~~L~ 383 (455)
..++.|++.|+.- ........++|+|+|.. ..+.++|+. ||+++|.++++. .+++.+++
T Consensus 141 --------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 141 --------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred --------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 4566777777521 11122457888899964 368899999 999999999886 46677777
Q ss_pred HHhh
Q 047029 384 FNYL 387 (455)
Q Consensus 384 ~~~l 387 (455)
.+.+
T Consensus 211 ~~~~ 214 (633)
T TIGR02442 211 RRRL 214 (633)
T ss_pred HHHH
Confidence 6544
No 176
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=2.1e-09 Score=116.58 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=101.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEE-Ee---cc
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYD-ME---LA 275 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~-l~---~~ 275 (455)
--.|.++++|+++++..+++...+.... .+..+.+.++|+||||||||++++++|+.++..+.. .+ +.
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 4678999999999988887766654321 123344569999999999999999999999865433 11 00
Q ss_pred ----------c--------cCChHHHHHHHHhh------------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhH
Q 047029 276 ----------S--------LRSNSDLRRLLVST------------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTL 325 (455)
Q Consensus 276 ----------~--------~~~~~~l~~ll~~~------------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l 325 (455)
. ......+.+++... .++.||+||||+.++. . ....+
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~------------r-~~~~l 215 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY------------R-DTRAL 215 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch------------h-hHHHH
Confidence 0 01123344444322 2467999999997653 1 11234
Q ss_pred hhhhh-hhhcccccCCCceEEEEEcCCCC--------------CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 326 SGLLN-FVDGLWSSCGDERIIVFTTNYKE--------------RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 326 s~LL~-~ldg~~~~~~~~~ivI~TTN~~~--------------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
..+|. ... ..+.-.+|+++|..+. .|.++++...|+ .+|.|.+....+.++.+...+..+
T Consensus 216 q~lLr~~~~----e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E 290 (637)
T TIGR00602 216 HEILRWKYV----SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIE 290 (637)
T ss_pred HHHHHHHhh----cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhh
Confidence 44444 111 1111123333442221 133677743355 479999999999888888888754
No 177
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=2.2e-09 Score=107.61 Aligned_cols=116 Identities=23% Similarity=0.352 Sum_probs=85.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC------------------------CcEEEEeccccCC----hHHHHHHHHhh--
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK------------------------FDIYDMELASLRS----NSDLRRLLVST-- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~------------------------~~v~~l~~~~~~~----~~~l~~ll~~~-- 290 (455)
+..+||+||||||||++|.++|+.+. .+++.++.++... ...++++....
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~ 103 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE 103 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhcc
Confidence 33799999999999999999999996 5788888877654 33455444332
Q ss_pred ----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCcee
Q 047029 291 ----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMD 366 (455)
Q Consensus 291 ----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d 366 (455)
....|++|||+|.+-. ...+.++..++- .+.+..+|++||.+..+-+.+.+ |+
T Consensus 104 ~~~~~~~kviiidead~mt~----------------~A~nallk~lEe----p~~~~~~il~~n~~~~il~tI~S--Rc- 160 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE----------------DAANALLKTLEE----PPKNTRFILITNDPSKILPTIRS--RC- 160 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH----------------HHHHHHHHHhcc----CCCCeEEEEEcCChhhccchhhh--cc-
Confidence 2457999999998743 334555555543 23568899999999999999998 88
Q ss_pred EEEEeCCCCHHHH
Q 047029 367 MHIHMSYLTPGGF 379 (455)
Q Consensus 367 ~~I~~~~p~~~~~ 379 (455)
..+.|..|+...+
T Consensus 161 ~~i~f~~~~~~~~ 173 (325)
T COG0470 161 QRIRFKPPSRLEA 173 (325)
T ss_pred eeeecCCchHHHH
Confidence 5788877555443
No 178
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.05 E-value=8.8e-10 Score=117.88 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=98.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhc--CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEE----eccccCC--
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM----ELASLRS-- 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l----~~~~~~~-- 279 (455)
.+.|.+.+|..|.-.+- .+......-| +....++||+|+||||||++++++++.+....+.. ++..+..
T Consensus 204 ~i~G~~~~k~~l~l~l~---gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 204 SIYGHEDIKKAILLLLF---GGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred cccCcHHHHHHHHHHHh---CCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 46677777776654432 1100000001 11123699999999999999999999886544432 1111110
Q ss_pred -------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc---------cccCCCce
Q 047029 280 -------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL---------WSSCGDER 343 (455)
Q Consensus 280 -------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ 343 (455)
...++.-........+++|||+|.+.. ...+.|++.|+.- ....+...
T Consensus 281 ~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~----------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 281 TRDPETREFTLEGGALVLADNGVCCIDEFDKMDD----------------SDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred eEccCcceEEecCccEEecCCCEEEEechhhCCH----------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 000111011123568999999998742 3455666666432 22223456
Q ss_pred EEEEEcCCCC-------------CCCccccCCCceeEEEEe-CCCCHHHHHHHHHHhhcc
Q 047029 344 IIVFTTNYKE-------------RLDPALLRPGRMDMHIHM-SYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 344 ivI~TTN~~~-------------~Ld~allRpGR~d~~I~~-~~p~~~~~~~L~~~~l~~ 389 (455)
.||+|+|+.+ .|++++++ |||+.+.+ ++|+.+....|+++.+..
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 7999999763 59999999 99986554 889999999999886643
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-09 Score=118.03 Aligned_cols=198 Identities=20% Similarity=0.215 Sum_probs=126.7
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEec
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMEL 274 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~ 274 (455)
.+|-++|-++-.+++++.|.+ .-+++-+|.|+||+|||.++..+|... +..++.+|+
T Consensus 168 klDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 367788888877777777652 226688999999999999999999987 678899998
Q ss_pred cccCC--------hHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceE
Q 047029 275 ASLRS--------NSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERI 344 (455)
Q Consensus 275 ~~~~~--------~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 344 (455)
+.+.. +..++.++.... .+.|||||||+.+.+..+..+ . ..-.+.+|.-+-. . ++.-
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-------~-a~DAaNiLKPaLA----R-GeL~ 301 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-------G-AMDAANLLKPALA----R-GELR 301 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-------c-ccchhhhhHHHHh----c-CCeE
Confidence 87632 466777776553 378999999999976222111 0 1112222222111 1 4444
Q ss_pred EEEEcC------CCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc--CCC---chHHHHHhhccccCchhHHH
Q 047029 345 IVFTTN------YKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK--SHS---MFDEIEELIKEVEVTPAEEF 413 (455)
Q Consensus 345 vI~TTN------~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~--~~~---l~~ei~~ll~~~~~tpa~~l 413 (455)
+|++|. +.++ |+||-| || ..|.+..|+.++--.|++-.-... .|. ..+.|.... ..+..++
T Consensus 302 ~IGATT~~EYRk~iEK-D~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv----~LS~RYI 373 (786)
T COG0542 302 CIGATTLDEYRKYIEK-DAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAV----TLSDRYI 373 (786)
T ss_pred EEEeccHHHHHHHhhh-chHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHH----HHHHhhc
Confidence 555443 4455 899999 99 579999999999777776443221 121 122222221 1122455
Q ss_pred hccCCHHHHHHHHHHHHHHhhhh
Q 047029 414 MKSEDADVALNGLVDFLLRKKEQ 436 (455)
Q Consensus 414 ~~~~~~~~al~~l~~~l~~~~~~ 436 (455)
-.+.-||.|++-+-++-.+.+..
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhc
Confidence 55667888888777777666654
No 180
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.02 E-value=3e-10 Score=105.00 Aligned_cols=94 Identities=27% Similarity=0.466 Sum_probs=63.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc-------CChHHHHHHHHhhCCceEEEEecccchhhhhhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL-------RSNSDLRRLLVSTGNRSILVIEDIDCSIELENR 310 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~-------~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~ 310 (455)
+.|++|+||||||||+||.|+|+++ |..+..++..++ .......+.+....+..+|+|||+....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~----- 121 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP----- 121 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS------
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceee-----
Confidence 5799999999999999999999987 888888887665 1223445566666678999999997532
Q ss_pred cCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
........|.+.+|..... .-+|+|||..
T Consensus 122 ---------~~~~~~~~l~~ii~~R~~~----~~tIiTSN~~ 150 (178)
T PF01695_consen 122 ---------LSEWEAELLFEIIDERYER----KPTIITSNLS 150 (178)
T ss_dssp -----------HHHHHCTHHHHHHHHHT-----EEEEEESS-
T ss_pred ---------ecccccccchhhhhHhhcc----cCeEeeCCCc
Confidence 1223345566666665432 3577799965
No 181
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.02 E-value=7.6e-09 Score=94.19 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=80.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC-----------------------CcEEEEecccc---CChHHHHHHHHhhC--
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK-----------------------FDIYDMELASL---RSNSDLRRLLVSTG-- 291 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~-----------------------~~v~~l~~~~~---~~~~~l~~ll~~~~-- 291 (455)
.+..+||+||+|+||+++|.++|+.+- .+++.++.... ..-.+++++.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 366899999999999999999999872 24555554432 24466776665442
Q ss_pred ----CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeE
Q 047029 292 ----NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDM 367 (455)
Q Consensus 292 ----~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~ 367 (455)
...|++|||+|.+-. ...+.||..|+.- +.+.++|++|+.++.|-|.+++ |+ .
T Consensus 98 ~~~~~~KviiI~~ad~l~~----------------~a~NaLLK~LEep----p~~~~fiL~t~~~~~il~TI~S--Rc-~ 154 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTE----------------EAQNALLKTLEEP----PENTYFILITNNPSKILPTIRS--RC-Q 154 (162)
T ss_dssp -TTSSSEEEEEETGGGS-H----------------HHHHHHHHHHHST----TTTEEEEEEES-GGGS-HHHHT--TS-E
T ss_pred HhcCCceEEEeehHhhhhH----------------HHHHHHHHHhcCC----CCCEEEEEEECChHHChHHHHh--hc-e
Confidence 367999999998743 5667888888764 3568999999999999999999 88 5
Q ss_pred EEEeCCC
Q 047029 368 HIHMSYL 374 (455)
Q Consensus 368 ~I~~~~p 374 (455)
.+.|+..
T Consensus 155 ~i~~~~l 161 (162)
T PF13177_consen 155 VIRFRPL 161 (162)
T ss_dssp EEEE---
T ss_pred EEecCCC
Confidence 6777654
No 182
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.01 E-value=1e-09 Score=107.10 Aligned_cols=123 Identities=24% Similarity=0.411 Sum_probs=78.7
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC--
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR-- 278 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~-- 278 (455)
.++.++-+.+...+.....+..+.. +|. .+.|++||||||||||+|+.|||+++ |..++.+...++.
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~---~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~ 147 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVE---FFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK 147 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHH---Hhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3445566666666666555554442 222 36799999999999999999999998 7788888877652
Q ss_pred -----ChHHH-HHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 -----SNSDL-RRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 -----~~~~l-~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
..... .++.....+..+|+|||+..... ....-+.+++.|+..... ... ++|||.+
T Consensus 148 Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~--------------~~~~~~~~~q~I~~r~~~---~~~-~~tsN~~ 209 (254)
T COG1484 148 LKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF--------------SQEEADLLFQLISRRYES---RSL-IITSNLS 209 (254)
T ss_pred HHHHHhcCchHHHHHHHhhcCCEEEEecccCccC--------------CHHHHHHHHHHHHHHHhh---ccc-eeecCCC
Confidence 11122 23334467789999999987421 112223444445544332 233 9999975
No 183
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.98 E-value=2.6e-09 Score=107.82 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=68.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC---------hHHHHHHHHhhCCceEEEEecccchhhhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS---------NSDLRRLLVSTGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~---------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~ 308 (455)
..+++||||||||||+|+.|+|+++ |..++.+....+.. .......+....+..+|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~-- 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI-- 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC--
Confidence 3789999999999999999999998 77888777655411 112222245555678999999986421
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC-C----CCCccccC
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK-E----RLDPALLR 361 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~-~----~Ld~allR 361 (455)
.....+.|.+.++..... +.-+|+|||.+ + .+++++..
T Consensus 261 ------------t~~~~~~Lf~iin~R~~~---~k~tIiTSNl~~~el~~~~~eri~S 303 (329)
T PRK06835 261 ------------TEFSKSELFNLINKRLLR---QKKMIISTNLSLEELLKTYSERISS 303 (329)
T ss_pred ------------CHHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHH
Confidence 223345566666654432 34578899853 2 24555655
No 184
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.97 E-value=2.6e-09 Score=105.24 Aligned_cols=135 Identities=24% Similarity=0.466 Sum_probs=81.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc---EEEEeccccCChHHHHHHHHhh-------------CCceEEEEecccch
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASLRSNSDLRRLLVST-------------GNRSILVIEDIDCS 304 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~~~~~~l~~ll~~~-------------~~~~IL~iDEiD~l 304 (455)
++.+||.||+|||||++++.+-+.+.-. +..+.++...+...+++++... .++.|+||||+..-
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 6789999999999999999887766433 3345555554455565554322 13579999999965
Q ss_pred hhhhhhcCCCCCCCCcchhhHhhhh-hhhh--cccccCC------CceEEEEEcCCCC---CCCccccCCCceeEEEEeC
Q 047029 305 IELENRQCGGGYDENNSQVTLSGLL-NFVD--GLWSSCG------DERIIVFTTNYKE---RLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ls~LL-~~ld--g~~~~~~------~~~ivI~TTN~~~---~Ld~allRpGR~d~~I~~~ 372 (455)
.. +.-..+..+ +|| +.|| |.++... .++.+|+++|+.. .+++.++| .| ..+.++
T Consensus 113 ~~----------d~ygtq~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~ 178 (272)
T PF12775_consen 113 QP----------DKYGTQPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIP 178 (272)
T ss_dssp -------------TTS--HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE--
T ss_pred CC----------CCCCCcCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEec
Confidence 32 111122222 333 3343 4443221 3466888888642 47889998 88 479999
Q ss_pred CCCHHHHHHHHHHhhcc
Q 047029 373 YLTPGGFKILAFNYLKI 389 (455)
Q Consensus 373 ~p~~~~~~~L~~~~l~~ 389 (455)
+|+.++...|+..++..
T Consensus 179 ~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQS 195 (272)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999988888777653
No 185
>PRK04132 replication factor C small subunit; Provisional
Probab=98.95 E-value=9.4e-09 Score=114.39 Aligned_cols=127 Identities=11% Similarity=0.151 Sum_probs=100.1
Q ss_pred eEEEC--CCCCChHHHHHHHHHHc-----CCcEEEEeccccCChHHHHHHHHhhC--------CceEEEEecccchhhhh
Q 047029 244 YLLYG--PPGTGKSSLIAAMANYL-----KFDIYDMELASLRSNSDLRRLLVSTG--------NRSILVIEDIDCSIELE 308 (455)
Q Consensus 244 ~LL~G--PpGTGKTsla~alA~~l-----~~~v~~l~~~~~~~~~~l~~ll~~~~--------~~~IL~iDEiD~l~~~~ 308 (455)
.+..| |++.||||+|.|+|+++ +.+++.++.++..+...+++++.... +..|++|||+|.+-.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 35558 99999999999999998 56899999998767777887764421 236999999998732
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
...+.|+..|+.. ++...+|++||++..+.+++++ |+ ..+.|+.|+.++....+...+.
T Consensus 645 --------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 645 --------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred --------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 3456677777753 2457899999999999999999 88 6899999999998888887766
Q ss_pred ccCCC
Q 047029 389 IKSHS 393 (455)
Q Consensus 389 ~~~~~ 393 (455)
.++..
T Consensus 704 ~Egi~ 708 (846)
T PRK04132 704 NEGLE 708 (846)
T ss_pred hcCCC
Confidence 54433
No 186
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.93 E-value=1.2e-08 Score=103.28 Aligned_cols=154 Identities=16% Similarity=0.205 Sum_probs=103.5
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChH
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNS 281 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~ 281 (455)
-|++++|....-+.+++.+...... ...|||+|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 4678999888888888888765533 4579999999999999999998766 46899999998743 3
Q ss_pred HHHHHHH------------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccCC--
Q 047029 282 DLRRLLV------------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSCG-- 340 (455)
Q Consensus 282 ~l~~ll~------------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~-- 340 (455)
.+...+. ....+..|||||||.+.. .....|++.++.-. ...+
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~----------------~~Q~~L~~~l~~~~~~~~g~~ 135 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------------LVQEKLLRVIEYGELERVGGS 135 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH----------------HHHHHHHHHHhcCcEEeCCCC
Confidence 3333321 223467899999998843 34455666665321 1111
Q ss_pred ----CceEEEEEcCCC-------CCCCccccCCCce-eEEEEeCCCCH--HHHHHHHHHhhc
Q 047029 341 ----DERIIVFTTNYK-------ERLDPALLRPGRM-DMHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 341 ----~~~ivI~TTN~~-------~~Ld~allRpGR~-d~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
.++.||+||+.. ..+.+.|.. || ...|++|+... +....|+.+|+.
T Consensus 136 ~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 136 QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHH
Confidence 235677877753 345566666 77 45677766544 335567776653
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=1.7e-08 Score=102.34 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=92.4
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCc-------------------------EEEEeccc-----------------
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD-------------------------IYDMELAS----------------- 276 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~-------------------------v~~l~~~~----------------- 276 (455)
..+.+|||+||+|+||+++|.++|+.+.+. ++.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 346799999999999999999999988431 22221110
Q ss_pred ------------cCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 277 ------------LRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 277 ------------~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
.-.-.+++.+..... ...|++||++|.+-. ...+.||..++.
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----------------~AaNaLLKtLEE---- 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV----------------AAANALLKTLEE---- 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH----------------HHHHHHHHHhcC----
Confidence 112245666554432 346999999998732 456788888874
Q ss_pred CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHh
Q 047029 339 CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 339 ~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~ 386 (455)
.+++.++|++|+.++.|.|.+++ |+ ..|.|+.|+.++..+.+...
T Consensus 159 Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 35678999999999999999999 98 68999999998887766653
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.92 E-value=5.9e-09 Score=95.48 Aligned_cols=116 Identities=20% Similarity=0.188 Sum_probs=74.4
Q ss_pred cccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHH
Q 047029 209 LAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRR 285 (455)
Q Consensus 209 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~ 285 (455)
|+|....-+++++.+...... +..|||+|++||||+.+|++|.+.. +.+++.++|+.+..+.--.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 355556666676766654433 5689999999999999999999976 46899999998743332233
Q ss_pred HHHh-----------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cccCC------C
Q 047029 286 LLVS-----------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WSSCG------D 341 (455)
Q Consensus 286 ll~~-----------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~~------~ 341 (455)
+|-. ..+...||||||+.+.. .....|++.|+.- ....+ -
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~----------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPP----------------ELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-H----------------HHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhccccccccccccccCCceeeccceEEeecchhhhHH----------------HHHHHHHHHHhhchhccccccccccc
Confidence 4421 12457999999999854 4556677777632 11111 2
Q ss_pred ceEEEEEcCC
Q 047029 342 ERIIVFTTNY 351 (455)
Q Consensus 342 ~~ivI~TTN~ 351 (455)
++-||+|||.
T Consensus 134 ~~RiI~st~~ 143 (168)
T PF00158_consen 134 DVRIIASTSK 143 (168)
T ss_dssp -EEEEEEESS
T ss_pred cceEEeecCc
Confidence 4668888875
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.92 E-value=1.4e-08 Score=109.50 Aligned_cols=157 Identities=19% Similarity=0.221 Sum_probs=104.8
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
..+|+.++|....-+++++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 357999999999988888888765432 4579999999999999999999886 56899999998743
Q ss_pred hHHHHHHHH------------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cccCC
Q 047029 280 NSDLRRLLV------------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WSSCG 340 (455)
Q Consensus 280 ~~~l~~ll~------------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~~ 340 (455)
..+...+. ...++..||||||+.+.. .....|+..++.- ....+
T Consensus 261 -~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~----------------~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 -TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP----------------AFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred -HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH----------------HHHHHHHHHHhcCcEEECC
Confidence 33333321 123467999999998743 3445667766532 11111
Q ss_pred ------CceEEEEEcCCC-------CCCCccccCCCce-eEEEEeCCCC--HHHHHHHHHHhhcc
Q 047029 341 ------DERIIVFTTNYK-------ERLDPALLRPGRM-DMHIHMSYLT--PGGFKILAFNYLKI 389 (455)
Q Consensus 341 ------~~~ivI~TTN~~-------~~Ld~allRpGR~-d~~I~~~~p~--~~~~~~L~~~~l~~ 389 (455)
.++-+|+|||.. ..+.+.|.. |+ ...|.+|+.. .+....|+..|+..
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHH
Confidence 135677777643 123333333 44 3467777665 35566777777653
No 190
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.90 E-value=1.8e-08 Score=110.94 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=100.4
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCCh
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSN 280 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~ 280 (455)
.+|++++|....-+++++.+...... ...+||+|++||||+++|+++.+.. +.+++.++|..+..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 46899999888888888877765543 4479999999999999999999876 468999999987542
Q ss_pred HHHHHHHHh--------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccCCC----
Q 047029 281 SDLRRLLVS--------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSCGD---- 341 (455)
Q Consensus 281 ~~l~~ll~~--------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~~---- 341 (455)
.--.++|.. ..++..||||||+.+.. .....|+..++.-. ...+.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~----------------~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP----------------ELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH----------------HHHHHHHHHHhcCcEEeCCCCceE
Confidence 222234321 23467899999998743 33455666665321 11111
Q ss_pred --ceEEEEEcCCCCCCCccccCCCce---------eEEEEeCCCCHH--HHHHHHHHhhc
Q 047029 342 --ERIIVFTTNYKERLDPALLRPGRM---------DMHIHMSYLTPG--GFKILAFNYLK 388 (455)
Q Consensus 342 --~~ivI~TTN~~~~Ld~allRpGR~---------d~~I~~~~p~~~--~~~~L~~~~l~ 388 (455)
++-||+|||..- ..+...|+| ...|.+|+.... ....|+..|+.
T Consensus 455 ~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred EeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 356888887531 222233444 455666655442 35566776665
No 191
>PRK09183 transposase/IS protein; Provisional
Probab=98.89 E-value=3.6e-09 Score=103.61 Aligned_cols=154 Identities=17% Similarity=0.218 Sum_probs=86.6
Q ss_pred HhhhhHHHHHHHHHHhccceEEEeecCcccccccCCCCCCcccccC--HHHHHHHHHHHHHHHHhHHHHhhhcCCCCcee
Q 047029 167 NKYLPYVAERSKAIKETKKVIKLYSLCAADAINLDHPSTFDTLAMD--PVLKQALIDDLDRFVKRREFYSRVGKAWKRGY 244 (455)
Q Consensus 167 ~~yl~~v~~~~~~~~~~~~~~~~~~~~~w~~~~~~~p~tfd~l~g~--~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~ 244 (455)
.+|+..+++...+.++.++..+.. ....|+.+.+++++... +...+..+..+.. -.+ +....++
T Consensus 40 ~e~l~~ll~~E~~~R~~~~~~~~~-----k~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~----~~~-----i~~~~~v 105 (259)
T PRK09183 40 MDFLEHLLHEEKLARHQRKQAMYT-----RMAAFPAVKTFEEYDFTFATGAPQKQLQSLRS----LSF-----IERNENI 105 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhCCCCCCCcHhhcccccCCCCCHHHHHHHhc----CCc-----hhcCCeE
Confidence 356666777666665554433221 22244555665554431 2222333333321 111 1225689
Q ss_pred EEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-------ChHHHHHHHHh-hCCceEEEEecccchhhhhhhcCC
Q 047029 245 LLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR-------SNSDLRRLLVS-TGNRSILVIEDIDCSIELENRQCG 313 (455)
Q Consensus 245 LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~-------~~~~l~~ll~~-~~~~~IL~iDEiD~l~~~~~~~~~ 313 (455)
+|+||||||||+|+.++|+.+ |..+..++...+. ....+...+.. ...+.+++|||++....
T Consensus 106 ~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~------- 178 (259)
T PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPF------- 178 (259)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCC-------
Confidence 999999999999999998775 7777777655432 11123344433 45678999999986421
Q ss_pred CCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 314 GGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 314 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.......|++.++..... .-+|+|||.+
T Consensus 179 -------~~~~~~~lf~li~~r~~~----~s~iiTsn~~ 206 (259)
T PRK09183 179 -------SQEEANLFFQVIAKRYEK----GSMILTSNLP 206 (259)
T ss_pred -------ChHHHHHHHHHHHHHHhc----CcEEEecCCC
Confidence 112223455555554332 2378899965
No 192
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.88 E-value=1.2e-08 Score=103.24 Aligned_cols=149 Identities=18% Similarity=0.212 Sum_probs=94.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHHH
Q 047029 210 AMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRRL 286 (455)
Q Consensus 210 ~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~l 286 (455)
+|....-+++++.+...... ...|||+|++||||+++|+++.... +.+++.++|..+.. ..+...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~-----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~-~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPL-----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSE-NLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCCh-HHHHHH
Confidence 45555566666666654322 4579999999999999999998776 46899999997643 333332
Q ss_pred H------------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-cc------CCC
Q 047029 287 L------------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SS------CGD 341 (455)
Q Consensus 287 l------------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~------~~~ 341 (455)
+ .....+..||||||+.+.. .....|+..++.-. .. ...
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~----------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL----------------LVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH----------------HHHHHHHHHHHcCcEEecCCCceecc
Confidence 2 1223568999999998743 33455666664321 11 113
Q ss_pred ceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCC--HHHHHHHHHHhhc
Q 047029 342 ERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLT--PGGFKILAFNYLK 388 (455)
Q Consensus 342 ~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~--~~~~~~L~~~~l~ 388 (455)
++.+|++||.. ..+.+.|.. |+. ..|++|+.. .+....|+..|+.
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 45677888743 234456665 663 466776665 3445667777664
No 193
>PRK06921 hypothetical protein; Provisional
Probab=98.88 E-value=1.3e-08 Score=100.09 Aligned_cols=63 Identities=27% Similarity=0.312 Sum_probs=45.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccccCC-----hHHHHHHHHhhCCceEEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELASLRS-----NSDLRRLLVSTGNRSILVIEDIDC 303 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~~~~-----~~~l~~ll~~~~~~~IL~iDEiD~ 303 (455)
..+++|+||||||||+|+.|+|+++ +..++.+...++.. -..+.+.+....+..+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 5689999999999999999999987 56677776544311 112233445556788999999954
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.87 E-value=9.7e-09 Score=96.69 Aligned_cols=151 Identities=19% Similarity=0.278 Sum_probs=96.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-C----CcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-K----FDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~----~~v~~l~~~ 275 (455)
-.|.-+.+++|+++..+.+.-.. +. |-. .++++.|||||||||-+.++|++| | -.+..++.+
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via----~~-------gnm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIA----KE-------GNM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHH----Hc-------CCC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 45777899999988766553322 21 222 379999999999999999999998 3 346677777
Q ss_pred ccCChHHHHH---HHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 276 SLRSNSDLRR---LLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 276 ~~~~~~~l~~---ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
+-.+-.-++. .|.+. .+..|+++||+|++-. ..++. |-..|+-. + ...-+.
T Consensus 88 deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------------gAQQA---lRRtMEiy-S---~ttRFa 147 (333)
T KOG0991|consen 88 DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------------GAQQA---LRRTMEIY-S---NTTRFA 147 (333)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-------------HHHHH---HHHHHHHH-c---ccchhh
Confidence 7655444443 34332 1347999999998743 11222 22333322 2 123467
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
+++|..+++-+.+-+ |+. .+.++..+..+...-+....
T Consensus 148 laCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVA 185 (333)
T ss_pred hhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHH
Confidence 889988888888877 774 35666666666443333333
No 195
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.84 E-value=9.1e-09 Score=111.76 Aligned_cols=128 Identities=19% Similarity=0.181 Sum_probs=89.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC--cEEEEecccc----CChHHHHHHHH-----------hhCCceEEEEecccch
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELASL----RSNSDLRRLLV-----------STGNRSILVIEDIDCS 304 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~~~----~~~~~l~~ll~-----------~~~~~~IL~iDEiD~l 304 (455)
.|+||.|+||||||++++++++.++. +++.+.+... -+.-.+...+. ...+..+||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 47999999999999999999998864 4666664211 11111221111 1134579999999987
Q ss_pred hhhhhhcCCCCCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCCC---CCCccccCCCceeEEEEeC
Q 047029 305 IELENRQCGGGYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYKE---RLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~~---~Ld~allRpGR~d~~I~~~ 372 (455)
.+ .+.+.|++.|+.- ....+....+|+|+|..+ .|.++|+. ||+++|.+.
T Consensus 97 ~~----------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 97 DD----------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred CH----------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 43 5667788887632 122234567889999775 78999999 999999998
Q ss_pred CC-CHHHHHHHHHHhh
Q 047029 373 YL-TPGGFKILAFNYL 387 (455)
Q Consensus 373 ~p-~~~~~~~L~~~~l 387 (455)
++ ..++|.+|+++++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 75 5666888888876
No 196
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.83 E-value=7.8e-08 Score=102.57 Aligned_cols=165 Identities=21% Similarity=0.323 Sum_probs=100.7
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe-cccc-
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME-LASL- 277 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~-~~~~- 277 (455)
--.|.+.++|+......+++..++...+. +..+.+-+||+||||||||++++++|+++|+.+.... ....
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 35689999999998877777777764332 3344567899999999999999999999998877642 1110
Q ss_pred ---------CC-----------hHHHHHH-HHhh-------------CCceEEEEecccchhhhhhhcCCCCCCCCcchh
Q 047029 278 ---------RS-----------NSDLRRL-LVST-------------GNRSILVIEDIDCSIELENRQCGGGYDENNSQV 323 (455)
Q Consensus 278 ---------~~-----------~~~l~~l-l~~~-------------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~ 323 (455)
.+ ...+..+ +... .++.||+|||+-.++. ... .
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~------------~~~-~ 150 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH------------RDT-S 150 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc------------hhH-H
Confidence 00 0112222 1111 2467999999976542 111 2
Q ss_pred hHhh-hhhhhhcccccCCC-ceEEEEE-c------CCC--------CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHh
Q 047029 324 TLSG-LLNFVDGLWSSCGD-ERIIVFT-T------NYK--------ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 324 ~ls~-LL~~ldg~~~~~~~-~~ivI~T-T------N~~--------~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~ 386 (455)
.+.. |...+.. ... .+|||+| + |.. ..+++.++.-.++ .+|.|-+-.....+..+.+.
T Consensus 151 ~f~~~L~~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI 225 (519)
T PF03215_consen 151 RFREALRQYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRI 225 (519)
T ss_pred HHHHHHHHHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHH
Confidence 2222 2233322 222 5677776 1 111 1355666654455 57899888887777777776
Q ss_pred hccc
Q 047029 387 LKIK 390 (455)
Q Consensus 387 l~~~ 390 (455)
+..+
T Consensus 226 ~~~E 229 (519)
T PF03215_consen 226 LKKE 229 (519)
T ss_pred HHHH
Confidence 6544
No 197
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.83 E-value=8.4e-08 Score=96.62 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=39.4
Q ss_pred eEEEEEcCC------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 343 RIIVFTTNY------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 343 ~ivI~TTN~------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
-+||++||+ |..++..|+. |+ +.|...+++.++.+++++..+..++..+.++.-.++..
T Consensus 308 PiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ 378 (398)
T PF06068_consen 308 PIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTK 378 (398)
T ss_dssp -EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHH
T ss_pred cEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHH
Confidence 588888883 4568889998 98 78999999999999999999998888887766555543
No 198
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.4e-07 Score=95.04 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=91.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC------------------------cEEEEecc--ccCChHHHHHHHHhh----
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DIYDMELA--SLRSNSDLRRLLVST---- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~------------------------~v~~l~~~--~~~~~~~l~~ll~~~---- 290 (455)
+.++||+||+|+||+++|.++|+.+-+ +++.+... ...+-.+++++....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 568999999999999999999998832 34444321 112345666655433
Q ss_pred --CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 291 --GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 291 --~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
....|++||++|.+-. ...+.||..++. .+++.++|++|+.++.|.|.+++ |+ .+
T Consensus 104 ~~g~~KV~iI~~a~~m~~----------------~AaNaLLKtLEE----Pp~~~~fiL~t~~~~~llpTI~S--RC-~~ 160 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE----------------AAANALLKTLEE----PRPNTYFLLQADLSAALLPTIYS--RC-QT 160 (325)
T ss_pred ccCCceEEEEechhhhCH----------------HHHHHHHHHhcC----CCCCeEEEEEECChHhCchHHHh--hc-eE
Confidence 2357999999998732 456778887765 34678999999999999999999 88 67
Q ss_pred EEeCCCCHHHHHHHHHHh
Q 047029 369 IHMSYLTPGGFKILAFNY 386 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~ 386 (455)
+.|+.|+.++..+.+...
T Consensus 161 ~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 899999998877666543
No 199
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.79 E-value=3.1e-07 Score=91.46 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=45.3
Q ss_pred eEEEEEcCC------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 343 RIIVFTTNY------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 343 ~ivI~TTN~------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
-|||++||+ |..++..|+. |+ ..|...+.+.++.++|++.....++..+.++.-+++.
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~ 390 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLT 390 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHH
Confidence 478888884 4678889998 88 6788888888999999998888877777766555544
No 200
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.5e-08 Score=97.73 Aligned_cols=96 Identities=25% Similarity=0.360 Sum_probs=67.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--------hHHHHHHHHhh------CCceEEEEecccchhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS--------NSDLRRLLVST------GNRSILVIEDIDCSIE 306 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~--------~~~l~~ll~~~------~~~~IL~iDEiD~l~~ 306 (455)
+.++||.||.|||||.||+.+|+.|+.+|-.-|++.+.. +.-+.+++..+ ..+.|++|||||.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 568999999999999999999999999999999887731 23455666544 3579999999999854
Q ss_pred hhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 307 LENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
. ....+-.-+-...-....||..++|...+
T Consensus 177 k--SeN~SITRDVSGEGVQQALLKiiEGTvas 206 (408)
T COG1219 177 K--SENPSITRDVSGEGVQQALLKIIEGTVAS 206 (408)
T ss_pred c--CCCCCcccccCchHHHHHHHHHHcCceec
Confidence 1 11111111112234456688888876544
No 201
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.78 E-value=3.8e-08 Score=100.23 Aligned_cols=156 Identities=23% Similarity=0.281 Sum_probs=105.6
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc---------------
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--------------- 268 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~--------------- 268 (455)
..|..++|++..|..|.-.... +.=.|+|+-|+.|||||++++|+|..|.--
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 4678899999999888665331 123489999999999999999999998311
Q ss_pred -------------------------EEEEeccc----cCChHHHHHHHH-----------hhCCceEEEEecccchhhhh
Q 047029 269 -------------------------IYDMELAS----LRSNSDLRRLLV-----------STGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 269 -------------------------v~~l~~~~----~~~~~~l~~ll~-----------~~~~~~IL~iDEiD~l~~~~ 308 (455)
++.+.++. +.+.-++.+.+. ...++.||+|||+..|.+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH--
Confidence 11111111 011112333332 123578999999987743
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhh---------hcccccCCCceEEEEEcCCC-CCCCccccCCCceeEEEEeCCC-CHH
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFV---------DGLWSSCGDERIIVFTTNYK-ERLDPALLRPGRMDMHIHMSYL-TPG 377 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~l---------dg~~~~~~~~~ivI~TTN~~-~~Ld~allRpGR~d~~I~~~~p-~~~ 377 (455)
.....||+.+ +|+.-..+-+.++|+|+|+- ..|-|-|+. ||..+|.+.+| +.+
T Consensus 159 --------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 159 --------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred --------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 3445566555 45544555678999999964 568889999 99999999876 556
Q ss_pred HHHHHHHHhhccc
Q 047029 378 GFKILAFNYLKIK 390 (455)
Q Consensus 378 ~~~~L~~~~l~~~ 390 (455)
++.++..+-+...
T Consensus 223 ~rv~Ii~r~~~f~ 235 (423)
T COG1239 223 ERVEIIRRRLAFE 235 (423)
T ss_pred HHHHHHHHHHHhh
Confidence 6888888777653
No 202
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.77 E-value=5.8e-08 Score=103.99 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=99.8
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHH-----------cCCcEEEE
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-----------LKFDIYDM 272 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~-----------l~~~v~~l 272 (455)
.+|++++|.....+++++.+..+... ...+||+|++||||+++|+++.+. .+.+++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 57999999998888888887755443 458999999999999999999987 35799999
Q ss_pred eccccCChHHHHHHHH-------------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh
Q 047029 273 ELASLRSNSDLRRLLV-------------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD 333 (455)
Q Consensus 273 ~~~~~~~~~~l~~ll~-------------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld 333 (455)
+|..+.. ..+...+. +......||||||+.+.. .....|+..++
T Consensus 285 nCaal~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~----------------~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAE-SLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPL----------------PLQTRLLRVLE 347 (538)
T ss_pred ecccCCh-hhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCH----------------HHHHHHHhhhh
Confidence 9998743 33333221 123457899999998743 33455666664
Q ss_pred ccc-ccC------CCceEEEEEcCCC-C-C-----CCccccCCCcee-EEEEeCCCCH--HHHHHHHHHhhcc
Q 047029 334 GLW-SSC------GDERIIVFTTNYK-E-R-----LDPALLRPGRMD-MHIHMSYLTP--GGFKILAFNYLKI 389 (455)
Q Consensus 334 g~~-~~~------~~~~ivI~TTN~~-~-~-----Ld~allRpGR~d-~~I~~~~p~~--~~~~~L~~~~l~~ 389 (455)
.-. ... .-++-+|++||.. + . +.+.|.- |+. ..|++|+... +....|+..|+..
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHH
Confidence 321 111 1234577777753 1 1 1122222 332 4455555433 3355677777754
No 203
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.77 E-value=5.2e-08 Score=104.26 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=103.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~ 277 (455)
....+|++++|.....+.+++.+..+... ...+||+|++||||+++|+++.+.. +.+++.++|..+
T Consensus 206 ~~~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 206 RTRYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAI 274 (526)
T ss_pred ccccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccC
Confidence 44467999999998888888888765443 4589999999999999999999875 578999999987
Q ss_pred CChHHHHHHHH-------------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-c
Q 047029 278 RSNSDLRRLLV-------------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-S 337 (455)
Q Consensus 278 ~~~~~l~~ll~-------------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~ 337 (455)
.. ..+...+. +......||||||+.+.. .....|+..++.-. .
T Consensus 275 ~e-~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~----------------~~Q~~Ll~~L~~~~~~ 337 (526)
T TIGR02329 275 AE-SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL----------------PLQTRLLRVLEEREVV 337 (526)
T ss_pred Ch-hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH----------------HHHHHHHHHHhcCcEE
Confidence 43 33333221 123457899999998743 33455666664321 1
Q ss_pred cCC------CceEEEEEcCCC--CCCCccccCC---Ccee-EEEEeCCCCH--HHHHHHHHHhhcc
Q 047029 338 SCG------DERIIVFTTNYK--ERLDPALLRP---GRMD-MHIHMSYLTP--GGFKILAFNYLKI 389 (455)
Q Consensus 338 ~~~------~~~ivI~TTN~~--~~Ld~allRp---GR~d-~~I~~~~p~~--~~~~~L~~~~l~~ 389 (455)
..| -++-+|++||.. +.+....+|+ .|+. ..|++|+... +....|+..|+..
T Consensus 338 r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 338 RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred ecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 111 123577777643 2222222221 1443 5667766544 3455677777654
No 204
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.5e-07 Score=94.65 Aligned_cols=122 Identities=15% Similarity=0.208 Sum_probs=88.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC---------------------cEEEEe--cccc-------CChHHHHHHHHhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF---------------------DIYDME--LASL-------RSNSDLRRLLVST 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~---------------------~v~~l~--~~~~-------~~~~~l~~ll~~~ 290 (455)
+..+||+||+|+||+++|.++|+.+-+ |++.++ ...- ..-..++++....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 568999999999999999999988722 344342 1110 1234555554433
Q ss_pred C------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCc
Q 047029 291 G------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGR 364 (455)
Q Consensus 291 ~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR 364 (455)
. ...|++||++|.+-. ...+.||..++.- +++.++|++|+.++.|-|.+++ |
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~----------------~AaNaLLKtLEEP----p~~~~fiL~~~~~~~lLpTIrS--R 163 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINR----------------AACNALLKTLEEP----SPGRYLWLISAQPARLPATIRS--R 163 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCH----------------HHHHHHHHHhhCC----CCCCeEEEEECChhhCchHHHh--h
Confidence 2 347999999998732 4567788877653 4568899999999999999999 9
Q ss_pred eeEEEEeCCCCHHHHHHHHHH
Q 047029 365 MDMHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 365 ~d~~I~~~~p~~~~~~~L~~~ 385 (455)
+ ..|.|+.|+.++....+..
T Consensus 164 C-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 164 C-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred h-eEeeCCCcCHHHHHHHHHH
Confidence 8 5789999999876665553
No 205
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.3e-07 Score=93.28 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=91.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC-----------------------CcEEEEeccc---cCChHHHHHHHHhh----
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK-----------------------FDIYDMELAS---LRSNSDLRRLLVST---- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~-----------------------~~v~~l~~~~---~~~~~~l~~ll~~~---- 290 (455)
+.++||+||.|+||+++|.++|+.+- -|++.+.... ..+-.+++.+....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~ 104 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESS 104 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCc
Confidence 56899999999999999999999872 2455554321 12335566554332
Q ss_pred --CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 291 --GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 291 --~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
....|++||++|.+- ....+.||..++. .+++.++|++|+.++.|-|.+++ |+ ..
T Consensus 105 ~~~~~kV~iI~~ae~m~----------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~ 161 (319)
T PRK06090 105 QLNGYRLFVIEPADAMN----------------ESASNALLKTLEE----PAPNCLFLLVTHNQKRLLPTIVS--RC-QQ 161 (319)
T ss_pred ccCCceEEEecchhhhC----------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--cc-ee
Confidence 235799999999873 2456778888775 34678999999999999999999 98 58
Q ss_pred EEeCCCCHHHHHHHHHH
Q 047029 369 IHMSYLTPGGFKILAFN 385 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~ 385 (455)
+.|+.|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 99999999887766654
No 206
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=3.3e-08 Score=105.04 Aligned_cols=142 Identities=20% Similarity=0.209 Sum_probs=88.1
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc--EEEEeccccC---
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--IYDMELASLR--- 278 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~--v~~l~~~~~~--- 278 (455)
..|+++.|+..+++.+.-.+ .....++|.||||||||+++++++..+.-. -..++...+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 47889999887766543322 124579999999999999999999865210 0011111110
Q ss_pred ----------------------------ChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 279 ----------------------------SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 279 ----------------------------~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+....+.-......+.+|||||++.+.. ..+..|++
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~----------------~~~~~L~~ 317 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR----------------SVLDALRE 317 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH----------------HHHHHHHH
Confidence 0000111112233568999999997632 44555666
Q ss_pred hhhccc---------ccCCCceEEEEEcCCC------C-----------------CCCccccCCCceeEEEEeCCCCHHH
Q 047029 331 FVDGLW---------SSCGDERIIVFTTNYK------E-----------------RLDPALLRPGRMDMHIHMSYLTPGG 378 (455)
Q Consensus 331 ~ldg~~---------~~~~~~~ivI~TTN~~------~-----------------~Ld~allRpGR~d~~I~~~~p~~~~ 378 (455)
.|+.-. ...+.+..+|+++|.- + +|...|+. |||+++.++.++.++
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 664221 1112456788888852 1 58889999 999999999887654
No 207
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=7.5e-08 Score=97.26 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=88.1
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC-------------------------CcEEEEeccc----------cCChHHHH
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK-------------------------FDIYDMELAS----------LRSNSDLR 284 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~-------------------------~~v~~l~~~~----------~~~~~~l~ 284 (455)
.+..|||+||+|+|||++|.++|+.+. -+++.+.... ..+-..++
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 356899999999999999999999873 2455555421 01335566
Q ss_pred HHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCcc
Q 047029 285 RLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPA 358 (455)
Q Consensus 285 ~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~a 358 (455)
.+..... ...|++||+++.+-. ...+.|+..++... .+..+|++|+.++.+.+.
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~----------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAESMNL----------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhhCCH----------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHH
Confidence 6654432 357999999998732 34556777776542 346788899999999999
Q ss_pred ccCCCceeEEEEeCCCCHHHHHHHHH
Q 047029 359 LLRPGRMDMHIHMSYLTPGGFKILAF 384 (455)
Q Consensus 359 llRpGR~d~~I~~~~p~~~~~~~L~~ 384 (455)
+.+ |+ .++.|+.|+.++....+.
T Consensus 160 i~S--Rc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 160 IKS--RC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHH--Hh-hhhcCCCCCHHHHHHHHH
Confidence 998 88 679999999988665554
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=8.3e-07 Score=90.03 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=91.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC------------------------cEEEEecc---ccCChHHHHHHHHhh---
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DIYDMELA---SLRSNSDLRRLLVST--- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~------------------------~v~~l~~~---~~~~~~~l~~ll~~~--- 290 (455)
+..+||+||+|+||+++|.++|+.+-+ |++.+... ...+-.+++++....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 103 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH 103 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence 568999999999999999999998822 34444322 112345666665443
Q ss_pred ---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeE
Q 047029 291 ---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDM 367 (455)
Q Consensus 291 ---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~ 367 (455)
....|++||++|.+-. ...+.||..++. .+++.++|.+|+.++.|.|.+++ |+.
T Consensus 104 ~~~g~~kV~iI~~ae~m~~----------------~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 104 ARLGGAKVVWLPDAALLTD----------------AAANALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred cccCCceEEEEcchHhhCH----------------HHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc-
Confidence 2457999999998732 456778888765 34678999999999999999999 885
Q ss_pred EEEeCCCCHHHHHHHHHH
Q 047029 368 HIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 368 ~I~~~~p~~~~~~~L~~~ 385 (455)
.+.|+.|+.++....+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 689999998887766643
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.72 E-value=1.1e-07 Score=102.24 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=99.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~ 277 (455)
....+|++++|....-+++++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 34568999999888878888877654332 4469999999999999999987765 468999999987
Q ss_pred CChHHHHH-HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhc-cccc
Q 047029 278 RSNSDLRR-LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDG-LWSS 338 (455)
Q Consensus 278 ~~~~~l~~-ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~~ 338 (455)
.. ..+.. +|. ...++..|||||||.+.. .....|++++.. ....
T Consensus 267 ~~-~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~----------------~~Q~~Ll~~l~~~~~~~ 329 (520)
T PRK10820 267 PD-DVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSP----------------RMQAKLLRFLNDGTFRR 329 (520)
T ss_pred CH-HHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCH----------------HHHHHHHHHHhcCCccc
Confidence 43 23332 221 123467899999998743 233556666643 2222
Q ss_pred CC------CceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCCH--HHHHHHHHHhhc
Q 047029 339 CG------DERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 339 ~~------~~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
.| .++-||+||+.. ..+.+.|.. |+. ..|++|+... +....|+..|+.
T Consensus 330 ~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~ 393 (520)
T PRK10820 330 VGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVA 393 (520)
T ss_pred CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHH
Confidence 11 234577777643 223444555 653 4556665543 234455556554
No 210
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.69 E-value=1.6e-07 Score=104.26 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=84.2
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCCh
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSN 280 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~ 280 (455)
.+|++++|.....+.+++.+..+... ...+||+|++|||||++|+++.... +.+++.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~- 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA- 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-
Confidence 57899999999999998888865433 4589999999999999999999866 57899999987632
Q ss_pred HHHHHH-H-----------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccC--
Q 047029 281 SDLRRL-L-----------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSC-- 339 (455)
Q Consensus 281 ~~l~~l-l-----------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~-- 339 (455)
..+... | .....+++||||||+.+.. .....|+..++... ...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~----------------~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPL----------------ELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCH----------------HHHHHHHHHHHhCCEEeCCC
Confidence 111111 1 1233568999999998743 34456666665321 111
Q ss_pred ----CCceEEEEEcCCC
Q 047029 340 ----GDERIIVFTTNYK 352 (455)
Q Consensus 340 ----~~~~ivI~TTN~~ 352 (455)
..++-+|+||+..
T Consensus 505 ~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 505 NKIIQTDVRLIAATNRD 521 (686)
T ss_pred CCcccceEEEEEeCCCC
Confidence 1235677888753
No 211
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.67 E-value=4.1e-08 Score=104.11 Aligned_cols=140 Identities=23% Similarity=0.290 Sum_probs=87.8
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc--EEEEeccccC----
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--IYDMELASLR---- 278 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~--v~~l~~~~~~---- 278 (455)
.|..+.|...+++.+.-. ......++|+||||||||++++.++..+.-. -..++.+.+.
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 677777766555443211 1224579999999999999999999877311 0111211110
Q ss_pred -----------------ChHHHHHH----------HHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhh
Q 047029 279 -----------------SNSDLRRL----------LVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNF 331 (455)
Q Consensus 279 -----------------~~~~l~~l----------l~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ 331 (455)
.......+ ........+||+||++.+- ..++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~----------------~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFE----------------RRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCC----------------HHHHHHHHHH
Confidence 00111112 2233456899999998652 2556777777
Q ss_pred hhc-cc--cc------CCCceEEEEEcCCCC---------------------CCCccccCCCceeEEEEeCCCCHH
Q 047029 332 VDG-LW--SS------CGDERIIVFTTNYKE---------------------RLDPALLRPGRMDMHIHMSYLTPG 377 (455)
Q Consensus 332 ldg-~~--~~------~~~~~ivI~TTN~~~---------------------~Ld~allRpGR~d~~I~~~~p~~~ 377 (455)
|+. .. +. .+.+..+|+|+|... +|.++++. |||+++.+++++.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 742 21 11 234578999999652 47789999 99999999999866
No 212
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.66 E-value=4.5e-08 Score=86.47 Aligned_cols=79 Identities=29% Similarity=0.346 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC---cEEEEeccccCChHHHHHHH
Q 047029 211 MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF---DIYDMELASLRSNSDLRRLL 287 (455)
Q Consensus 211 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~---~v~~l~~~~~~~~~~l~~ll 287 (455)
|....-+++.+.+...... ...+||+|+|||||+++|+++....+. +++.+++.... .+++
T Consensus 2 G~S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l 65 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELL 65 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHH
Confidence 3444556666766654433 568999999999999999999998754 44445555433 3344
Q ss_pred HhhCCceEEEEecccchhh
Q 047029 288 VSTGNRSILVIEDIDCSIE 306 (455)
Q Consensus 288 ~~~~~~~IL~iDEiD~l~~ 306 (455)
.. ..+..|+|+|||.+..
T Consensus 66 ~~-a~~gtL~l~~i~~L~~ 83 (138)
T PF14532_consen 66 EQ-AKGGTLYLKNIDRLSP 83 (138)
T ss_dssp HH-CTTSEEEEECGCCS-H
T ss_pred HH-cCCCEEEECChHHCCH
Confidence 44 3778999999999843
No 213
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.64 E-value=3.5e-07 Score=98.10 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=99.5
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChH
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNS 281 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~ 281 (455)
.++.++|.....+++.+.+...... +..+||+|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~-~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPE-S 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCCh-H
Confidence 5788999999888888888764433 5589999999999999999999886 57899999998743 2
Q ss_pred HHHH-HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccC---
Q 047029 282 DLRR-LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSC--- 339 (455)
Q Consensus 282 ~l~~-ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~--- 339 (455)
.+.. +|. ...++..|||||||.+.. .....|+..++... ...
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~----------------~~Q~~Ll~~l~~~~~~~~g~~ 316 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPL----------------ALQAKLLRVLQYGEIQRVGSD 316 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCH----------------HHHHHHHHHHhcCCEeeCCCC
Confidence 2222 221 123467899999998843 33455666664321 111
Q ss_pred ---CCceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCCH--HHHHHHHHHhhc
Q 047029 340 ---GDERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 340 ---~~~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
..++-||++||.. ..+.+.|.. |+. ..|++|+... +....|+..|+.
T Consensus 317 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 317 RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred cceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHH
Confidence 1245677777753 224444444 443 3456655433 234456666654
No 214
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.64 E-value=5.2e-07 Score=86.82 Aligned_cols=172 Identities=20% Similarity=0.197 Sum_probs=93.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDEN 319 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~ 319 (455)
..|-.++||+|||||.+++++|+.+|..++.++|++..+-..+.++|.... .++.+++||++.+-. .
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~------------~ 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSE------------E 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSH------------H
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhH------------H
Confidence 567889999999999999999999999999999999888899999997664 589999999998732 1
Q ss_pred cchhhHhhhhhhh-hccccc------------CCCceEEEEEcCC----CCCCCccccCCCceeEEEEeCCCCHHHHHHH
Q 047029 320 NSQVTLSGLLNFV-DGLWSS------------CGDERIIVFTTNY----KERLDPALLRPGRMDMHIHMSYLTPGGFKIL 382 (455)
Q Consensus 320 ~~~~~ls~LL~~l-dg~~~~------------~~~~~ivI~TTN~----~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L 382 (455)
. -..+++.+..+ +.+... ...+.-+++|.|+ ...|++.|.. -| +.|.|..||.....++
T Consensus 100 v-LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 100 V-LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp H-HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHHH
Confidence 1 11111111111 111110 0122335567773 3567777765 44 7899999998876655
Q ss_pred HHHhhcccC-CCchHHHHHhhccccCchhHHHh-ccCCHHHHHHHHHHHHHHh
Q 047029 383 AFNYLKIKS-HSMFDEIEELIKEVEVTPAEEFM-KSEDADVALNGLVDFLLRK 433 (455)
Q Consensus 383 ~~~~l~~~~-~~l~~ei~~ll~~~~~tpa~~l~-~~~~~~~al~~l~~~l~~~ 433 (455)
.-...+..+ ..+...+..+.+ -+..++ +...-|-.|+.+...|...
T Consensus 176 ~L~s~GF~~a~~La~kl~~l~~-----l~~~~lS~q~hydfgLRalk~vl~~a 223 (231)
T PF12774_consen 176 LLLSQGFKDAKSLAKKLVSLFQ-----LCKEQLSKQDHYDFGLRALKSVLRMA 223 (231)
T ss_dssp HHHCCCTSSHHHHHHHHHHHHH-----HHHHCS-SSTT---SHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHH-----HHHHhhccCccccccHHHHHHHHHHH
Confidence 544444322 122233333221 112222 4455555555555555443
No 215
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.64 E-value=4e-08 Score=83.12 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=40.1
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccch
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCS 304 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l 304 (455)
|.||||||+|||++++.+|..+.-.+-......+-....-.+.+.......++++||+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~ 61 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQD 61 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCcc
Confidence 5799999999999999999888533211111111111222345566667789999999865
No 216
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.5e-07 Score=95.67 Aligned_cols=130 Identities=22% Similarity=0.324 Sum_probs=83.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--------hHHHHHHHHhh------CCceEEEEecccchhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS--------NSDLRRLLVST------GNRSILVIEDIDCSIE 306 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~--------~~~l~~ll~~~------~~~~IL~iDEiD~l~~ 306 (455)
+.++||.||.|+|||.|++-+|+.++.+|...||+.+.. ++-+.+++..+ .+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 568999999999999999999999999999999998732 35567777555 3578999999999852
Q ss_pred hhhhcCCCCCCCCcchhhHhhhhhhhhccccc---------CCCceEEEEEcCCC-------CCCCccccCCCcee-EEE
Q 047029 307 LENRQCGGGYDENNSQVTLSGLLNFVDGLWSS---------CGDERIIVFTTNYK-------ERLDPALLRPGRMD-MHI 369 (455)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~---------~~~~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I 369 (455)
....-... -+-...-....||..++|..-+ ..++.+.|=|||-. -.||.-+-| |++ ..+
T Consensus 306 ~~~~i~~~--RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 306 KAESIHTS--RDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred cCcccccc--ccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhc
Confidence 11110000 0112233455677777764322 12345555555532 345555555 543 445
Q ss_pred EeCCC
Q 047029 370 HMSYL 374 (455)
Q Consensus 370 ~~~~p 374 (455)
-|+.|
T Consensus 382 GFg~~ 386 (564)
T KOG0745|consen 382 GFGAP 386 (564)
T ss_pred ccCCC
Confidence 56666
No 217
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=1.1e-07 Score=97.45 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccccC
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELASLR 278 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~~~ 278 (455)
...+++++|....-+++++.++.+- +....+|++|++||||+.+|++|.... ..+++.++|+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 3468899999988888888887521 114579999999999999999998543 5689999999987
Q ss_pred ChHHHHHHHHh-----------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhc-ccc---
Q 047029 279 SNSDLRRLLVS-----------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDG-LWS--- 337 (455)
Q Consensus 279 ~~~~l~~ll~~-----------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-~~~--- 337 (455)
.+-...++|-- ..+..+||+|||..+.. ...-.|+.+||. .+.
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~----------------~~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP----------------EGQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH----------------hHHHHHHHHHHcCceEecC
Confidence 66655555521 12457999999998854 223346666663 222
Q ss_pred ---cCCCceEEEEEcCC-C-CCCCc--cccCCCceeEEEEeCCCCHH--HHHHHHHHhhcc
Q 047029 338 ---SCGDERIIVFTTNY-K-ERLDP--ALLRPGRMDMHIHMSYLTPG--GFKILAFNYLKI 389 (455)
Q Consensus 338 ---~~~~~~ivI~TTN~-~-~~Ld~--allRpGR~d~~I~~~~p~~~--~~~~L~~~~l~~ 389 (455)
....++.+|++||- + +.+-. .+.| -|+.+.|++|+..+. ++..|+..|+..
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHH
Confidence 12245677777763 2 22222 3332 166677777766543 355677777754
No 218
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=2.4e-07 Score=80.75 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=71.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC--CcEEEEeccccCChH----HHHHHHHhh--CCceEEEEecccchhhhhhhcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK--FDIYDMELASLRSNS----DLRRLLVST--GNRSILVIEDIDCSIELENRQC 312 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~--~~v~~l~~~~~~~~~----~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~ 312 (455)
.+.++|+||.|||||++++.+++.+. .++..+++.+..... ++.+.+.+. ..+.+||||||..+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~------ 75 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD------ 75 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc------
Confidence 35789999999999999999999886 788888877653211 133444333 3578999999997621
Q ss_pred CCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCC--ccccCCCceeEEEEeCCCCHHHH
Q 047029 313 GGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLD--PALLRPGRMDMHIHMSYLTPGGF 379 (455)
Q Consensus 313 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld--~allRpGR~d~~I~~~~p~~~~~ 379 (455)
....+..+.+ .. .+.-||+|+.....+. -+-.=+||.. .+++.+.+..++
T Consensus 76 --------~~~~lk~l~d---~~-----~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 --------WEDALKFLVD---NG-----PNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFREF 127 (128)
T ss_pred --------HHHHHHHHHH---hc-----cCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHHh
Confidence 2222333333 11 2333444443322221 1222346884 799999888774
No 219
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.58 E-value=2.4e-07 Score=103.13 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=82.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc-------EEEEeccccCC-h----HH--HHHHHHhhCCceEEEEecccchhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD-------IYDMELASLRS-N----SD--LRRLLVSTGNRSILVIEDIDCSIE 306 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~-------v~~l~~~~~~~-~----~~--l~~ll~~~~~~~IL~iDEiD~l~~ 306 (455)
.-.+||.|+||||||.+++++++..... ...+.++.... . .. +..-........+++|||+|.+..
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~ 571 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN 571 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH
Confidence 3479999999999999999999876433 23333332110 0 00 000001123467999999998742
Q ss_pred hhhhcCCCCCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCCC-------------CCCccccCCCc
Q 047029 307 LENRQCGGGYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYKE-------------RLDPALLRPGR 364 (455)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~allRpGR 364 (455)
.....|++.|+.- ...-.....||+|+|+.+ .|+++|+. |
T Consensus 572 ----------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--R 633 (915)
T PTZ00111 572 ----------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--R 633 (915)
T ss_pred ----------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--h
Confidence 3445667776532 122234578999999852 37799999 9
Q ss_pred eeEEE-EeCCCCHHHHHHHHHHhhc
Q 047029 365 MDMHI-HMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 365 ~d~~I-~~~~p~~~~~~~L~~~~l~ 388 (455)
||+.. -++.|+.+.=+.|+.+.+.
T Consensus 634 FDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 634 FDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hcEEEEecCCCChHHHHHHHHHHHH
Confidence 98764 5688888876677666553
No 220
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5e-07 Score=93.78 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=89.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEecc-cc------CChHHHHHHHHhhC--CceEEEEecccchhhhhhhcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELA-SL------RSNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQC 312 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~-~~------~~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~ 312 (455)
..+||+||||+|||+||.-+|...+++++.+-.. +. ..-..+.+.|.++. .-+||++|||+.+++...-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-- 616 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-- 616 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc--
Confidence 4699999999999999999999999999976432 22 11245667776653 3589999999998752111
Q ss_pred CCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCc-cccCCCceeEEEEeCCCCH-HHHHHHHHH
Q 047029 313 GGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDP-ALLRPGRMDMHIHMSYLTP-GGFKILAFN 385 (455)
Q Consensus 313 ~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~-allRpGR~d~~I~~~~p~~-~~~~~L~~~ 385 (455)
+..-+..++..|+-.+.... ..|...+|++||...+.|.+ .++. .|+..|++|..+. ++...++..
T Consensus 617 ----GPRfSN~vlQaL~VllK~~p-pkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 617 ----GPRFSNLVLQALLVLLKKQP-PKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ----CchhhHHHHHHHHHHhccCC-CCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH
Confidence 12234455566666655443 23334556667766554432 3445 8889999998776 555555553
No 221
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.55 E-value=9.1e-07 Score=92.73 Aligned_cols=125 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS 276 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~ 276 (455)
+.+..+|++++|....-.++++.++.+-.. +-.+||.|.+||||..+|+++.+.. +-+|+.++|..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~t-----------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKT-----------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCC-----------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 567789999999888887777776644332 5689999999999999999999987 67999999998
Q ss_pred cCChHHHHHHHHh-------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh----
Q 047029 277 LRSNSDLRRLLVS-------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD---- 333 (455)
Q Consensus 277 ~~~~~~l~~ll~~-------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---- 333 (455)
+- +.-+..-|.. ..+..-||+|||..+.. .....||..+.
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl----------------~LQaKLLRVLQEkei 369 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL----------------PLQAKLLRVLQEKEI 369 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH----------------HHHHHHHHHHhhceE
Confidence 62 2223332322 23456899999997632 34556666654
Q ss_pred ---cccccCCCceEEEEEcCCC
Q 047029 334 ---GLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 334 ---g~~~~~~~~~ivI~TTN~~ 352 (455)
|-....+-++-||+|||..
T Consensus 370 ~rvG~t~~~~vDVRIIAATN~n 391 (560)
T COG3829 370 ERVGGTKPIPVDVRIIAATNRN 391 (560)
T ss_pred EecCCCCceeeEEEEEeccCcC
Confidence 2222223457799999963
No 222
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.4e-06 Score=86.27 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=48.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhh-cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
.++|+.+.|+.+-=.|..-.++.+.-..+ .--.|+++|..||.|+|||-+|+.+|+..+.+|+.+..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 36788888887755554333222211111 1123789999999999999999999999999999887643
No 223
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.3e-08 Score=98.78 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...|.|+.|++..|+.+.-... -..|+|++||||||||++|+-+...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 4579999999999998865443 15689999999999999999998766
No 224
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.2e-06 Score=84.62 Aligned_cols=164 Identities=18% Similarity=0.220 Sum_probs=111.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CCcEEE--------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDIYD-------- 271 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~-------- 271 (455)
-.|.+|+.+....+....+..... . + . =..+|+|||+|+||-|.+.++-+++ |..+..
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~----~-------~-d-~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS----T-------G-D-FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc----c-------C-C-CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 347788888877776666544322 0 0 0 1379999999999999999999987 322111
Q ss_pred --------------------EeccccC--ChHHHHHHHHhhC-----------CceEEEEecccchhhhhhhcCCCCCCC
Q 047029 272 --------------------MELASLR--SNSDLRRLLVSTG-----------NRSILVIEDIDCSIELENRQCGGGYDE 318 (455)
Q Consensus 272 --------------------l~~~~~~--~~~~l~~ll~~~~-----------~~~IL~iDEiD~l~~~~~~~~~~~~~~ 318 (455)
++.++.+ +.--+++++.+.. .-.+++|-|+|.+..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------------ 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------------ 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------------
Confidence 1111111 1123455554442 126999999998742
Q ss_pred CcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 319 NNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 319 ~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
.....|-..|+...++ .-+|+.+|....+-+++.+ |+ ..|.++.|+.++...++.+.+..++..+..++
T Consensus 142 ----dAQ~aLRRTMEkYs~~----~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 142 ----DAQHALRRTMEKYSSN----CRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred ----HHHHHHHHHHHHHhcC----ceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 3345566666665444 4477889999999999998 88 67999999999999999999988877666554
Q ss_pred HH
Q 047029 399 EE 400 (455)
Q Consensus 399 ~~ 400 (455)
..
T Consensus 211 l~ 212 (351)
T KOG2035|consen 211 LK 212 (351)
T ss_pred HH
Confidence 43
No 225
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.52 E-value=1.9e-06 Score=83.83 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=39.8
Q ss_pred eEEEEEcCC-------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 343 RIIVFTTNY-------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 343 ~ivI~TTN~-------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
-+|||+||+ |..+++.|+. |+ +.|..-..+.++.++|++.....+...+.++.-.++.
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~ 396 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLA 396 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHH
Confidence 478888874 3567888888 88 5565555566777778887777776666655544443
No 226
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.52 E-value=1.2e-07 Score=96.95 Aligned_cols=97 Identities=19% Similarity=0.375 Sum_probs=61.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCC------cEEEE--ec----cccC-ChHHHHHHHHhhCCc-eEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------DIYDM--EL----ASLR-SNSDLRRLLVSTGNR-SILVIEDID 302 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------~v~~l--~~----~~~~-~~~~l~~ll~~~~~~-~IL~iDEiD 302 (455)
..+.++|++||||+|+|||+|+-...+.+.. ++... +. ..+. ....+..+.....+. .||+|||+.
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQ 137 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeee
Confidence 3567899999999999999999999988843 11111 00 0001 122233333344443 499999997
Q ss_pred chhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 303 CSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.- +......+..|++.+ +. .++++|+|+|++
T Consensus 138 V~-------------DiaDAmil~rLf~~l---~~---~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT-------------DIADAMILKRLFEAL---FK---RGVVLVATSNRP 168 (362)
T ss_pred cc-------------chhHHHHHHHHHHHH---HH---CCCEEEecCCCC
Confidence 52 222345666677654 32 468999999953
No 227
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.50 E-value=4.5e-07 Score=89.24 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=101.9
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc------EEEEe
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD------IYDME 273 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~------v~~l~ 273 (455)
=..|..++++++..++-..+.+. . +.+.-...|+|||||||||+.+.|.|+.+-.+ +..++
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~-----------~--~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRY-----------S--GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHh-----------c--cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 35677888888877665544432 1 22222289999999999999999999988432 22333
Q ss_pred ccccCCh---HHHHHHHHhhC---------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 274 LASLRSN---SDLRRLLVSTG---------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 274 ~~~~~~~---~~l~~ll~~~~---------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
.++-.+- ..-.+.|..+. ....+++||.|+... ...+.|-..+.... .
T Consensus 101 aSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------------~AQnALRRviek~t----~ 160 (360)
T KOG0990|consen 101 ASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------------DAQNALRRVIEKYT----A 160 (360)
T ss_pred ccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH----------------HHHHHHHHHHHHhc----c
Confidence 4332221 22223343333 457999999998743 22333333444432 3
Q ss_pred ceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 342 ERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 342 ~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+.-++.-+|++..+.|++.. ||. ...+...+..+-.....+.+..+....
T Consensus 161 n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~ 210 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKET 210 (360)
T ss_pred ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhc
Confidence 45566789999999999998 884 577777777777777777776654433
No 228
>PHA02624 large T antigen; Provisional
Probab=98.50 E-value=6.6e-07 Score=95.49 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=79.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGY 316 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~ 316 (455)
|++.++.++||||||||||+++.+|++.++..+..++.+.- .+.--|.-.....+.+|||+-.-.-... .-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~----ks~FwL~pl~D~~~~l~dD~t~~~~~~~-----~L 497 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD----KLNFELGCAIDQFMVVFEDVKGQPADNK-----DL 497 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc----hhHHHhhhhhhceEEEeeeccccccccc-----cC
Confidence 67788899999999999999999999999666666654332 2333334444567999999963211000 00
Q ss_pred CCCcchhhHhhhhhhhhcccccCC-----Cc-----eEEEEEcCCCCCCCccccCCCceeEEEEeCC
Q 047029 317 DENNSQVTLSGLLNFVDGLWSSCG-----DE-----RIIVFTTNYKERLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 317 ~~~~~~~~ls~LL~~ldg~~~~~~-----~~-----~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~ 373 (455)
..+..-..+..|-|.+||-..-+= .. --.|.|||. ..|+..+.- ||..++.|..
T Consensus 498 p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 498 PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 011222234668889998721110 00 136778886 346777777 8988888754
No 229
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.49 E-value=5e-06 Score=81.21 Aligned_cols=128 Identities=21% Similarity=0.279 Sum_probs=72.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCC-cEEEEec--cccC-----------------C--h----HHHHHHHH---hhCCc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKF-DIYDMEL--ASLR-----------------S--N----SDLRRLLV---STGNR 293 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~-~v~~l~~--~~~~-----------------~--~----~~l~~ll~---~~~~~ 293 (455)
.++|+||+|+|||++++.+++.+.. .+..... .... . . ..+...+. ....+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999999863 2222111 0010 0 0 11222121 12356
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC--CCCCC----ccccCCCceeE
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY--KERLD----PALLRPGRMDM 367 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~--~~~Ld----~allRpGR~d~ 367 (455)
.+|+|||++.+.. .....+..+.+... ..+..+.||++... .+.+. ..+.+ |+..
T Consensus 125 ~vliiDe~~~l~~-------------~~~~~l~~l~~~~~----~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~ 185 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------------ELLEELRMLSNFQT----DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIA 185 (269)
T ss_pred eEEEEECcccCCH-------------HHHHHHHHHhCccc----CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heee
Confidence 8999999997632 11122223333211 11122333443321 11221 23555 8888
Q ss_pred EEEeCCCCHHHHHHHHHHhhcc
Q 047029 368 HIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 368 ~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.++++..+.++...++...+..
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988887754
No 230
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.46 E-value=2e-06 Score=93.85 Aligned_cols=50 Identities=32% Similarity=0.399 Sum_probs=40.3
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
.-|++++|+++.++.+...+.. +++++|+||||||||++++++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4578889988887766555431 3589999999999999999999999654
No 231
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=1.2e-06 Score=82.80 Aligned_cols=152 Identities=26% Similarity=0.354 Sum_probs=77.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc---EEEEeccccCC--------------------------------------
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASLRS-------------------------------------- 279 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~~~-------------------------------------- 279 (455)
.+.++||||.|+|||+|++.+.+.+.-. .+.++......
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 5689999999999999999999998321 11111100000
Q ss_pred ---hHHHHHHHHh---hCCceEEEEecccchh-hhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE-EcCC
Q 047029 280 ---NSDLRRLLVS---TGNRSILVIEDIDCSI-ELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF-TTNY 351 (455)
Q Consensus 280 ---~~~l~~ll~~---~~~~~IL~iDEiD~l~-~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~-TTN~ 351 (455)
...+..++.. ...+.||+|||++.+. . .......+..|.+.++..... .++.+|+ +++.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~--~~~~~v~~~S~~ 166 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA-----------SEEDKDFLKSLRSLLDSLLSQ--QNVSIVITGSSD 166 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC-----------TTTTHHHHHHHHHHHHH------TTEEEEEEESSH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc-----------ccchHHHHHHHHHHHhhcccc--CCceEEEECCch
Confidence 1112222222 1234899999999885 2 012234556677777764333 3344444 4431
Q ss_pred ---CC--CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC---chHHHHHhhccccCch
Q 047029 352 ---KE--RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS---MFDEIEELIKEVEVTP 409 (455)
Q Consensus 352 ---~~--~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~---l~~ei~~ll~~~~~tp 409 (455)
.+ .-...+.. |+.. +.+++.+.++..+++...+... .. -.++++.+..-..-.|
T Consensus 167 ~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 167 SLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 11 12233334 8876 9999999999999999876544 22 2345555544333333
No 232
>PF05729 NACHT: NACHT domain
Probab=98.43 E-value=2e-06 Score=76.94 Aligned_cols=131 Identities=19% Similarity=0.288 Sum_probs=71.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC---------cEEEEeccccCCh---HHHHHHH------------------HhhC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF---------DIYDMELASLRSN---SDLRRLL------------------VSTG 291 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~---------~v~~l~~~~~~~~---~~l~~ll------------------~~~~ 291 (455)
|-++|+|+||+|||++++.++..+.. -++.+.+...... ..+...+ ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35799999999999999999987711 1223333332211 1222222 1224
Q ss_pred CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhh-hhhhhhcccccCCCceEEEEEcCCCCC--CCccccCCCceeEE
Q 047029 292 NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSG-LLNFVDGLWSSCGDERIIVFTTNYKER--LDPALLRPGRMDMH 368 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~-LL~~ldg~~~~~~~~~ivI~TTN~~~~--Ld~allRpGR~d~~ 368 (455)
.+.+|+||.+|.+..... ......... +.+.+..- ...+.-+|.|+..... +...+-. ...
T Consensus 81 ~~~llilDglDE~~~~~~---------~~~~~~~~~~l~~l~~~~---~~~~~~liit~r~~~~~~~~~~~~~----~~~ 144 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQ---------SQERQRLLDLLSQLLPQA---LPPGVKLIITSRPRAFPDLRRRLKQ----AQI 144 (166)
T ss_pred CceEEEEechHhcccchh---------hhHHHHHHHHHHHHhhhc---cCCCCeEEEEEcCChHHHHHHhcCC----CcE
Confidence 567999999998753100 001111222 22333321 1123334444443221 2222222 157
Q ss_pred EEeCCCCHHHHHHHHHHhhc
Q 047029 369 IHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~l~ 388 (455)
+++...+.++.++++++|+.
T Consensus 145 ~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 145 LELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EEECCCCHHHHHHHHHHHhh
Confidence 89999999999999999885
No 233
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=8.6e-07 Score=76.69 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=29.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc--------CCcEEEEeccccC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL--------KFDIYDMELASLR 278 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l--------~~~v~~l~~~~~~ 278 (455)
++.++++||||+|||++++.+++.+ +.+++.+++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 4579999999999999999999988 6778888776543
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.40 E-value=2.4e-06 Score=89.80 Aligned_cols=153 Identities=19% Similarity=0.198 Sum_probs=91.0
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChH
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNS 281 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~ 281 (455)
.+..+++.....+.+.+.+..... ....++++|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~ 204 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-N 204 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-H
Confidence 345566666665666655543221 24579999999999999999998876 46899999998743 3
Q ss_pred HHHHHHHh------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccC---
Q 047029 282 DLRRLLVS------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSC--- 339 (455)
Q Consensus 282 ~l~~ll~~------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~--- 339 (455)
.+...+.. ...+..||||||+.+.. .....|+..++.-. ...
T Consensus 205 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~----------------~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 205 LLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL----------------NLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred HHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH----------------HHHHHHHHHHhhCeEEeCCCC
Confidence 34433321 13467899999998743 33455666664321 111
Q ss_pred ---CCceEEEEEcCCC-------CCCCccccCCCceeEEEEeCCCCHHHHH----HHHHHhhc
Q 047029 340 ---GDERIIVFTTNYK-------ERLDPALLRPGRMDMHIHMSYLTPGGFK----ILAFNYLK 388 (455)
Q Consensus 340 ---~~~~ivI~TTN~~-------~~Ld~allRpGR~d~~I~~~~p~~~~~~----~L~~~~l~ 388 (455)
..++-+|+||+.. ..+.+.|.. |+. .+.+..|.-.+|. .|+..|+.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~ 328 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLE 328 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHH
Confidence 1245677777653 234444443 442 2344444444443 46666654
No 235
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.39 E-value=3.1e-06 Score=89.72 Aligned_cols=154 Identities=17% Similarity=0.220 Sum_probs=97.0
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChH
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNS 281 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~ 281 (455)
.+.+++|.....+.+.+.+..... ....+|+.|++||||+++|+++.... +.+++.++|..+.. .
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~-~ 203 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSR-----------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK-D 203 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhc-----------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH-H
Confidence 456778877666666665543222 24579999999999999999999987 46899999988733 3
Q ss_pred HHHHHHHh------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccCC--
Q 047029 282 DLRRLLVS------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSCG-- 340 (455)
Q Consensus 282 ~l~~ll~~------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~-- 340 (455)
.+...+.. ...+..|||||||.+.. .....|+.+++... ...+
T Consensus 204 ~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~----------------~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 204 LIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL----------------DVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred HHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH----------------HHHHHHHHHHhcCcEEeCCCC
Confidence 33333311 22456899999998743 23445666665321 1111
Q ss_pred ----CceEEEEEcCCC-------CCCCccccCCCce-eEEEEeCCCCH--HHHHHHHHHhhc
Q 047029 341 ----DERIIVFTTNYK-------ERLDPALLRPGRM-DMHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 341 ----~~~ivI~TTN~~-------~~Ld~allRpGR~-d~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
-++-||+||+.. ..+.+.|.. |+ ...|++|+... +....|+..|+.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~ 327 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQ 327 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHH
Confidence 234677777643 234556665 66 46666666543 345567777764
No 236
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.2e-05 Score=79.56 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=79.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC----------------cEEEEeccc---cCChHHHHHHHHhhC------CceE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF----------------DIYDMELAS---LRSNSDLRRLLVSTG------NRSI 295 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~----------------~v~~l~~~~---~~~~~~l~~ll~~~~------~~~I 295 (455)
+..|||+||+|+||+.+|.++|..+-+ |++.+.... ..+-..++.+..... ...|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 558999999999999999999998832 343332211 123345555544432 3579
Q ss_pred EEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCC
Q 047029 296 LVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYL 374 (455)
Q Consensus 296 L~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p 374 (455)
++||++|.+-. ...+.||..++. .+++.++|+.|+.++.|.|.+++ |+ ..+.|+.+
T Consensus 99 ~ii~~ad~mt~----------------~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~S--Rc-q~~~~~~~ 154 (290)
T PRK05917 99 YIIHEADRMTL----------------DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRS--RS-LSIHIPME 154 (290)
T ss_pred EEEechhhcCH----------------HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHh--cc-eEEEccch
Confidence 99999998742 456778888775 34678999999999999999998 88 46777654
No 237
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.37 E-value=1.6e-06 Score=92.37 Aligned_cols=161 Identities=24% Similarity=0.288 Sum_probs=97.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhc-CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc--------cC
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS--------LR 278 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~--------~~ 278 (455)
++.+.+++|+.++=.| |--....+...| ....-++||+|.||||||.+.+.+++.+...+|.--..+ +.
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 4556777777775433 222222222222 122347999999999999999999999866665422111 11
Q ss_pred ChHHHHHHHHhh-----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh---------cccccCCCceE
Q 047029 279 SNSDLRRLLVST-----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD---------GLWSSCGDERI 344 (455)
Q Consensus 279 ~~~~l~~ll~~~-----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~~~~i 344 (455)
.+.+-++++.+. +...|-+|||+|.+.. .+.+.|++.|+ |+...-+...-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d----------------StrSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSD----------------STRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhH----------------HHHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 122233333332 3468999999998743 23445555554 33333334456
Q ss_pred EEEEcCCCC-------------CCCccccCCCceeEEE-EeCCCCHHHHHHHHHHhhc
Q 047029 345 IVFTTNYKE-------------RLDPALLRPGRMDMHI-HMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 345 vI~TTN~~~-------------~Ld~allRpGR~d~~I-~~~~p~~~~~~~L~~~~l~ 388 (455)
|+++.|+.+ .|+|.|++ |||... -++.|++..=+.|..+...
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 889999542 37899999 999765 4477777755556555544
No 238
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.36 E-value=3.3e-06 Score=89.04 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=76.0
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHH
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSD 282 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~ 282 (455)
+..+++....-..+.+.+...... ...+|++|++||||+++|+++.... +.+++.++|..+.. ..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~-----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~-~~ 209 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALS-----------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPE-SL 209 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCC-----------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCH-HH
Confidence 445666555555555555433322 4579999999999999999998875 57899999998743 33
Q ss_pred HHHHHHh------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-cc-----
Q 047029 283 LRRLLVS------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SS----- 338 (455)
Q Consensus 283 l~~ll~~------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~----- 338 (455)
+...+.. ...+.+|||||||.+.. .....|++.++... ..
T Consensus 210 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~----------------~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL----------------VLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred HHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH----------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 3333221 12357999999998843 23455666665321 11
Q ss_pred -CCCceEEEEEcCCC
Q 047029 339 -CGDERIIVFTTNYK 352 (455)
Q Consensus 339 -~~~~~ivI~TTN~~ 352 (455)
...++-||+|||..
T Consensus 274 ~~~~~~rii~~t~~~ 288 (457)
T PRK11361 274 TIKVDIRIIAATNRD 288 (457)
T ss_pred eeeeceEEEEeCCCC
Confidence 11235688888753
No 239
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.1e-05 Score=78.54 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCC----------------------cEEEEeccc-cCChHHHHHHHHhh---C-
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKF----------------------DIYDMELAS-LRSNSDLRRLLVST---G- 291 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~----------------------~v~~l~~~~-~~~~~~l~~ll~~~---~- 291 (455)
..+..+||+||+|+||..+|.++|..+-+ |++.+.... .-+-.+++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 45678999999999999999999988721 233321111 11234455554322 1
Q ss_pred ---CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 292 ---NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 292 ---~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
...|++|+++|.+-. ...+.||..++. .+.+.++|++|+.++.+.|.+++ |+. .
T Consensus 85 e~~~~KV~II~~ae~m~~----------------~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~S--RCq-~ 141 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK----------------QSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILS--RCV-Q 141 (261)
T ss_pred hcCCCEEEEeccHhhhCH----------------HHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhh--hee-e
Confidence 357999999998732 456778887765 35678999999999999999999 884 4
Q ss_pred EEeCCC
Q 047029 369 IHMSYL 374 (455)
Q Consensus 369 I~~~~p 374 (455)
+.++.+
T Consensus 142 ~~~~~~ 147 (261)
T PRK05818 142 YVVLSK 147 (261)
T ss_pred eecCCh
Confidence 666665
No 240
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.34 E-value=4.7e-06 Score=88.08 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=96.5
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHH
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDL 283 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l 283 (455)
..+++....-+++.+.+..... ....+++.|.+||||+++++++.... +.+++.++|..+. ...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~-~~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIP-KDLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCC-HHHH
Confidence 4567776666666666654221 14579999999999999999998875 5689999998873 3333
Q ss_pred HHHHHh------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cccCC----
Q 047029 284 RRLLVS------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WSSCG---- 340 (455)
Q Consensus 284 ~~ll~~------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~~---- 340 (455)
...+.. ...+..||||||+.+.. .....|+..++.. ....+
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~----------------~~q~~ll~~l~~~~~~~~~~~~~ 265 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL----------------DAQTRLLRVLADGEFYRVGGRTP 265 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH----------------HHHHHHHHHHhcCcEEECCCCce
Confidence 333311 12467899999998743 2345566666522 11111
Q ss_pred --CceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCC--HHHHHHHHHHhhcc
Q 047029 341 --DERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLT--PGGFKILAFNYLKI 389 (455)
Q Consensus 341 --~~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~--~~~~~~L~~~~l~~ 389 (455)
.++-||+||+.. ..+.+.|.. |+. .+|++|+.. .+....|+..|+..
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 266 IKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred eeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHH
Confidence 134577777643 233344444 444 478888776 56677777777653
No 241
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.4e-05 Score=79.77 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=88.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC-------------cEEEEe--ccccCChHHHHHHHHhh-------CCceEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF-------------DIYDME--LASLRSNSDLRRLLVST-------GNRSILVI 298 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~-------------~v~~l~--~~~~~~~~~l~~ll~~~-------~~~~IL~i 298 (455)
+..|||+|+.|.||+.++.++|+.+-+ ++..++ ... .+-.+++.+.... ..+.|++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-LSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-CCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 568999999999999999999998721 233343 211 2335566665433 25689999
Q ss_pred ecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHH
Q 047029 299 EDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGG 378 (455)
Q Consensus 299 DEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~ 378 (455)
|++|.+- ....+.||..++.- ++..++|++|+.++.|-|.+.. |+ ..+++..++.++
T Consensus 97 ~~~e~m~----------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~ 153 (299)
T PRK07132 97 KNIEKTS----------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQK 153 (299)
T ss_pred ecccccC----------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHH
Confidence 9998763 24556788887764 4567888888888999999998 87 579999999888
Q ss_pred HHHHHHH
Q 047029 379 FKILAFN 385 (455)
Q Consensus 379 ~~~L~~~ 385 (455)
....+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 7755543
No 242
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=4.2e-05 Score=75.98 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=82.6
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCC------------------------cEEEEeccc-cCChHHHHHHHHhhC---
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKF------------------------DIYDMELAS-LRSNSDLRRLLVSTG--- 291 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~------------------------~v~~l~~~~-~~~~~~l~~ll~~~~--- 291 (455)
.+.+|||+|| +||+++|.++|..+-+ |++.+.... .-+-.+++.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3568999996 6899999999987721 233332221 123356666654432
Q ss_pred ---CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 292 ---NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 292 ---~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
...|++||++|.+-. ...+.||..++.- +.+.++|++|+.++.|-|.+++ |+ .+
T Consensus 101 ~~~~~kV~II~~ad~m~~----------------~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~ 157 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV----------------NAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QI 157 (290)
T ss_pred ccCCcEEEEeehhhhcCH----------------HHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-ee
Confidence 357999999998742 4567788887753 4568999999999999999999 88 57
Q ss_pred EEeCCCCHHHHHHHHH
Q 047029 369 IHMSYLTPGGFKILAF 384 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~ 384 (455)
|.|+. +.++..+++.
T Consensus 158 i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 158 FHFPK-NEAYLIQLLE 172 (290)
T ss_pred eeCCC-cHHHHHHHHH
Confidence 88866 4554444443
No 243
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.8e-06 Score=93.54 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=79.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcC-CCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-----
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR----- 278 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~----- 278 (455)
.++|+++....|-+.+...-.+ ++. .+.-.+||.||.|+|||-||+|+|.++ .-.++.+|+++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 5677777777777776543321 222 244568999999999999999999998 4567888888621
Q ss_pred --------ChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc--cccCC-----C
Q 047029 279 --------SNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL--WSSCG-----D 341 (455)
Q Consensus 279 --------~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~--~~~~~-----~ 341 (455)
+......+-.... ..+||+|||||..- ...++.|+..+|.. .+..| .
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh----------------~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH----------------PDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhcC----------------HHHHHHHHHHHhcCccccCCCcEeecc
Confidence 1122223333332 35899999999752 24456677777632 12222 4
Q ss_pred ceEEEEEcCC
Q 047029 342 ERIIVFTTNY 351 (455)
Q Consensus 342 ~~ivI~TTN~ 351 (455)
+.|||+|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 5799999885
No 244
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.28 E-value=1.6e-05 Score=85.42 Aligned_cols=130 Identities=21% Similarity=0.252 Sum_probs=84.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHc----------CCcEEEEeccccCCh----------------------HHHHHHHH--
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMELASLRSN----------------------SDLRRLLV-- 288 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~~~~~~~----------------------~~l~~ll~-- 288 (455)
.+++.|-||||||.++..+-+.| .+.++.++...+.+. ..|..-|.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 68899999999999999999877 356666766554322 22222232
Q ss_pred -hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccC---CCc
Q 047029 289 -STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLR---PGR 364 (455)
Q Consensus 289 -~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allR---pGR 364 (455)
....++||+|||+|.|.. .. ..-|-|++|--.. .+...+||+..|..+. ++.++- ..|
T Consensus 504 k~~~~~~VvLiDElD~Lvt-------------r~---QdVlYn~fdWpt~-~~sKLvvi~IaNTmdl-PEr~l~nrvsSR 565 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVT-------------RS---QDVLYNIFDWPTL-KNSKLVVIAIANTMDL-PERLLMNRVSSR 565 (767)
T ss_pred CCCCCCEEEEeccHHHHhc-------------cc---HHHHHHHhcCCcC-CCCceEEEEecccccC-HHHHhccchhhh
Confidence 113568999999999864 11 2335566653322 2345667777776543 333331 114
Q ss_pred ee-EEEEeCCCCHHHHHHHHHHhhccc
Q 047029 365 MD-MHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 365 ~d-~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
++ ..|.|.+.+-+|..+++...|...
T Consensus 566 lg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 566 LGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred ccceeeecCCCCHHHHHHHHHHhhcch
Confidence 44 357888889999999999888765
No 245
>PHA02774 E1; Provisional
Probab=98.27 E-value=7e-06 Score=87.48 Aligned_cols=113 Identities=22% Similarity=0.255 Sum_probs=68.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEE-EeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYD-MELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGG 315 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~-l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~ 315 (455)
|++.+++++||||||||||+++.+|++.++..++. ++.. +.- .|.......|++|||+-.-
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~F----wLqpl~d~ki~vlDD~t~~----------- 491 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHF----WLQPLADAKIALLDDATHP----------- 491 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---ccc----ccchhccCCEEEEecCcch-----------
Confidence 56656799999999999999999999999766544 4432 111 1333445679999999321
Q ss_pred CCCCcchhhHhhhhhhhhcccccC---------CCceEEEEEcCCCCCCCc---cccCCCceeEEEEeCCC
Q 047029 316 YDENNSQVTLSGLLNFVDGLWSSC---------GDERIIVFTTNYKERLDP---ALLRPGRMDMHIHMSYL 374 (455)
Q Consensus 316 ~~~~~~~~~ls~LL~~ldg~~~~~---------~~~~ivI~TTN~~~~Ld~---allRpGR~d~~I~~~~p 374 (455)
...-.-..|-+.+||-.-+- -...-+|+|||..-.-++ .|.. |+ ..++|+.|
T Consensus 492 ----~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s--Ri-~~f~F~n~ 555 (613)
T PHA02774 492 ----CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS--RI-TVFEFPNP 555 (613)
T ss_pred ----HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--hE-EEEECCCC
Confidence 11122234677778762110 011347889994433343 3334 66 45666554
No 246
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.25 E-value=1.1e-05 Score=79.41 Aligned_cols=145 Identities=22% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCceeEEECCCCCChHHHHHHHHHH--c--CCc-EEEEeccccCCh------------------------HHHHHHHHhh
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANY--L--KFD-IYDMELASLRSN------------------------SDLRRLLVST 290 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~--l--~~~-v~~l~~~~~~~~------------------------~~l~~ll~~~ 290 (455)
..+-+.|+|++|+|||+||..+++. . .++ ++.++++...+. ..+...+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3567999999999999999999987 3 232 233443322111 1112222111
Q ss_pred --CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEE
Q 047029 291 --GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMH 368 (455)
Q Consensus 291 --~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~ 368 (455)
.++++|||||++... .+..+...+-.. ..+.-||+||...... ... +.-+..
T Consensus 98 L~~~~~LlVlDdv~~~~------------------~~~~l~~~~~~~----~~~~kilvTTR~~~v~-~~~---~~~~~~ 151 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE------------------DLEELREPLPSF----SSGSKILVTTRDRSVA-GSL---GGTDKV 151 (287)
T ss_dssp HCCTSEEEEEEEE-SHH------------------HH-------HCH----HSS-EEEEEESCGGGG-TTH---HSCEEE
T ss_pred hccccceeeeeeecccc------------------cccccccccccc----cccccccccccccccc-ccc---cccccc
Confidence 347999999998542 122222222111 1234566677653221 111 111578
Q ss_pred EEeCCCCHHHHHHHHHHhhcccC----CCchHHHHHhhccccCchh
Q 047029 369 IHMSYLTPGGFKILAFNYLKIKS----HSMFDEIEELIKEVEVTPA 410 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~l~~~~----~~l~~ei~~ll~~~~~tpa 410 (455)
++++..+.++-.+|+..+..... ..+.+...++++...-.|.
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999976544 2222333344444344554
No 247
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.23 E-value=1.6e-05 Score=93.27 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=89.8
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcE---EEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDI---YDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v---~~l~~ 274 (455)
.....+..++.++|.+...+++...+. .+....+-+-++||+|+||||||+++++.+...+ +.++.
T Consensus 175 l~~~~~~~~~~~vG~~~~l~~l~~lL~-----------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 175 LNLTPSNDFEDFVGIEDHIAKMSSLLH-----------LESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred hccccCcccccccchHHHHHHHHHHHc-----------cccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 334456678899998887777766553 1223356789999999999999999998874321 11111
Q ss_pred ccc-------C-----C---hHH-----HHHHHH--------------h-hCCceEEEEecccchhhhhhhcCCCCCCCC
Q 047029 275 ASL-------R-----S---NSD-----LRRLLV--------------S-TGNRSILVIEDIDCSIELENRQCGGGYDEN 319 (455)
Q Consensus 275 ~~~-------~-----~---~~~-----l~~ll~--------------~-~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~ 319 (455)
..+ . . ... +.+++. . ..++.+|++||++..
T Consensus 244 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------- 308 (1153)
T PLN03210 244 AFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------- 308 (1153)
T ss_pred cccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------
Confidence 000 0 0 000 111110 0 124679999998742
Q ss_pred cchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 320 NSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 320 ~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
..+..+....+ |. +.+--||+||... .+++....+..++++.|+.++..+|+..+...
T Consensus 309 ---~~l~~L~~~~~--~~--~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 309 ---DVLDALAGQTQ--WF--GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred ---HHHHHHHhhCc--cC--CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 11222222222 11 2233455677653 33333356778999999999999999887643
No 248
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.22 E-value=4.9e-06 Score=90.14 Aligned_cols=119 Identities=21% Similarity=0.193 Sum_probs=85.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC--cEEEEeccc----cCChHHHHHHHHh-----------hCCceEEEEecccch
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELAS----LRSNSDLRRLLVS-----------TGNRSILVIEDIDCS 304 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~~----~~~~~~l~~ll~~-----------~~~~~IL~iDEiD~l 304 (455)
.|+||-|++|||||+++++++..+.. ++..+..+. +.+.-++...+.. ...+.|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 58999999999999999999999854 666655432 2233445544422 224589999999876
Q ss_pred hhhhhhcCCCCCCCCcchhhHhhhhhhhh---------cccccCCCceEEEEEcCCC---CCCCccccCCCceeEEEEeC
Q 047029 305 IELENRQCGGGYDENNSQVTLSGLLNFVD---------GLWSSCGDERIIVFTTNYK---ERLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ld---------g~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~d~~I~~~ 372 (455)
- ..+++.|++.|+ |.....+...++|+|-|.. +.|.++++. ||+++|.++
T Consensus 106 ~----------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 106 E----------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred C----------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 3 367888888885 3333334456677765433 568999999 999999999
Q ss_pred CCCHHH
Q 047029 373 YLTPGG 378 (455)
Q Consensus 373 ~p~~~~ 378 (455)
+++..+
T Consensus 168 ~~~~~~ 173 (584)
T PRK13406 168 GLALRD 173 (584)
T ss_pred CCChHH
Confidence 988764
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=2.7e-05 Score=81.65 Aligned_cols=169 Identities=20% Similarity=0.306 Sum_probs=96.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe-------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME------- 273 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~------- 273 (455)
-.|.+.++|+.......++.+++..+.... .....+-+||+||+||||||.++.||.++|+.+..-.
T Consensus 76 y~P~t~eeLAVHkkKI~eVk~WL~~~~~~~------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~ 149 (634)
T KOG1970|consen 76 YKPRTLEELAVHKKKISEVKQWLKQVAEFT------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKE 149 (634)
T ss_pred cCcccHHHHhhhHHhHHHHHHHHHHHHHhc------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccc
Confidence 457899999988777777777666222111 1223567899999999999999999999998887644
Q ss_pred ccccCC---------hHHHHH---HHHhh--------------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhh
Q 047029 274 LASLRS---------NSDLRR---LLVST--------------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSG 327 (455)
Q Consensus 274 ~~~~~~---------~~~l~~---ll~~~--------------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~ 327 (455)
...+.+ .+.|.. .+... ..+.+|+|||+=..+- ......+..
T Consensus 150 ~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~------------~d~~~~f~e 217 (634)
T KOG1970|consen 150 PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFY------------RDDSETFRE 217 (634)
T ss_pred cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhh------------hhhHHHHHH
Confidence 111111 112211 11111 2356999999975542 112233444
Q ss_pred hhhhhhcccccCCCceEEEEEcC--CCCCCCccccCC------CceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 328 LLNFVDGLWSSCGDERIIVFTTN--YKERLDPALLRP------GRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 328 LL~~ldg~~~~~~~~~ivI~TTN--~~~~Ld~allRp------GR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
+|..+-. .+..-+||+.|+ .++..++..+.| .|+ .+|.|-+-...-.++.+++++..+..
T Consensus 218 vL~~y~s----~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~ 285 (634)
T KOG1970|consen 218 VLRLYVS----IGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEAN 285 (634)
T ss_pred HHHHHHh----cCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcc
Confidence 4443221 122224444444 234444433332 255 36777777777777777777766543
No 250
>PRK15115 response regulator GlrR; Provisional
Probab=98.21 E-value=8.7e-06 Score=85.60 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=77.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHHHHHh------------------hCCceEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRRLLVS------------------TGNRSILVIE 299 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~ll~~------------------~~~~~IL~iD 299 (455)
...++++|++||||+++|+++.+.. +.+++.++|..+.. ..+...+.. ...+..||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence 4579999999999999999999876 47899999998732 333333211 2245789999
Q ss_pred cccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-ccCC------CceEEEEEcCCCCCCCccccCCCce-------
Q 047029 300 DIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SSCG------DERIIVFTTNYKERLDPALLRPGRM------- 365 (455)
Q Consensus 300 EiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~~~------~~~ivI~TTN~~~~Ld~allRpGR~------- 365 (455)
|||.+.. .....|+.+++... ...| .++.+|+||+.. ++ .++..|+|
T Consensus 236 ~i~~l~~----------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~~~ 296 (444)
T PRK15115 236 EIGDMPA----------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LP-KAMARGEFREDLYYR 296 (444)
T ss_pred ccccCCH----------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHHHh
Confidence 9998843 23445666665321 1111 145777888753 32 22233454
Q ss_pred --eEEEEeCCCCHHHH----HHHHHHhhc
Q 047029 366 --DMHIHMSYLTPGGF----KILAFNYLK 388 (455)
Q Consensus 366 --d~~I~~~~p~~~~~----~~L~~~~l~ 388 (455)
...|++ |.-.+| ..|+..|+.
T Consensus 297 l~~~~i~l--PpLr~R~eDi~~l~~~~l~ 323 (444)
T PRK15115 297 LNVVSLKI--PALAERTEDIPLLANHLLR 323 (444)
T ss_pred hceeeecC--CChHhccccHHHHHHHHHH
Confidence 344444 444444 346666654
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.15 E-value=1.5e-06 Score=88.28 Aligned_cols=131 Identities=24% Similarity=0.242 Sum_probs=75.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc----c-----C----ChHHHHHHHHhhCCceEEEEecccchhhhh
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS----L-----R----SNSDLRRLLVSTGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~----~-----~----~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~ 308 (455)
-++||.|.||||||.|.+.+++.....+|..-.+. + . ++-.+..-..-...+.|++|||+|.+-.
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~-- 135 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE-- 135 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C--
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc--
Confidence 36999999999999999999877766665432111 1 0 1101111111224679999999998632
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCCC-------------CCCccccCCCcee
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYKE-------------RLDPALLRPGRMD 366 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~allRpGR~d 366 (455)
.....|++.|+.- ...-+.+.-|++++|+.. .++++|+. |||
T Consensus 136 --------------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFD 199 (331)
T PF00493_consen 136 --------------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFD 199 (331)
T ss_dssp --------------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-S
T ss_pred --------------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcC
Confidence 2345677777632 111223456899999775 48889999 999
Q ss_pred EEEEe-CCCCHHHHHHHHHHhhccc
Q 047029 367 MHIHM-SYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 367 ~~I~~-~~p~~~~~~~L~~~~l~~~ 390 (455)
..+.+ ..++.+.=..++++.+...
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT
T ss_pred EEEEeccccccccccccceEEEecc
Confidence 98766 6677776677777666543
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.14 E-value=2e-05 Score=69.91 Aligned_cols=63 Identities=17% Similarity=0.403 Sum_probs=41.9
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC-----------------------------ChHHHH---HHHH
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR-----------------------------SNSDLR---RLLV 288 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~-----------------------------~~~~l~---~ll~ 288 (455)
++++||||+|||+++..++..+ +.+++.++..... ....+. ..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 4455554432110 011111 1223
Q ss_pred hhCCceEEEEecccchhh
Q 047029 289 STGNRSILVIEDIDCSIE 306 (455)
Q Consensus 289 ~~~~~~IL~iDEiD~l~~ 306 (455)
....+.+++|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 345678999999998765
No 253
>PHA00729 NTP-binding motif containing protein
Probab=98.14 E-value=4.3e-06 Score=79.80 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=24.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
.+++|+|+||||||++|.++|+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3799999999999999999999986433
No 254
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.09 E-value=1.9e-05 Score=90.71 Aligned_cols=129 Identities=22% Similarity=0.304 Sum_probs=93.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh-------------HHH----HHHHHhhCCceEEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN-------------SDL----RRLLVSTGNRSILVIEDIDC 303 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~-------------~~l----~~ll~~~~~~~IL~iDEiD~ 303 (455)
.+++||.|.||+|||+|+.|+|+..|-.++.+++++-..- .++ ...+..+.++..+++||+.-
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence 5689999999999999999999999999999998864210 111 12344556778999999985
Q ss_pred hhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc----------ccCCCceEEEEEcCCC------CCCCccccCCCceeE
Q 047029 304 SIELENRQCGGGYDENNSQVTLSGLLNFVDGLW----------SSCGDERIIVFTTNYK------ERLDPALLRPGRMDM 367 (455)
Q Consensus 304 l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~----------~~~~~~~ivI~TTN~~------~~Ld~allRpGR~d~ 367 (455)
. ++..+.+|-..+|... -.+.++..|++|-|+. ..|+..++. ||.
T Consensus 1623 a----------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs- 1683 (4600)
T COG5271 1623 A----------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS- 1683 (4600)
T ss_pred h----------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-
Confidence 3 2445666665555321 1234556677777754 458889998 994
Q ss_pred EEEeCCCCHHHHHHHHHHhhc
Q 047029 368 HIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 368 ~I~~~~p~~~~~~~L~~~~l~ 388 (455)
+|.|...+.+....|+...+.
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred eEEecccccchHHHHHHhhCC
Confidence 688988888888888776665
No 255
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.07 E-value=1.2e-05 Score=84.09 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=99.0
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCCh
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSN 280 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~ 280 (455)
..+..++|....-+++.+.+...... .-.||++|++||||-.+|++|.+.. +.+|+.++|..+-.
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~- 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE- 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-
Confidence 35678899888888888877654333 4589999999999999999999987 46999999998732
Q ss_pred HHHHH-HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhh-cccccCC-
Q 047029 281 SDLRR-LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVD-GLWSSCG- 340 (455)
Q Consensus 281 ~~l~~-ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld-g~~~~~~- 340 (455)
.-+.. +|- +..++..||||||..+.. .....||..+. +-...-|
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl----------------~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL----------------ELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH----------------HHHHHHHHHHHcCeeEecCC
Confidence 22333 332 112467999999997632 33445666554 2222222
Q ss_pred -----CceEEEEEcCCC--C-----CCCccccCCCceeEEEEeCCCCHHHH----HHHHHHhhcc
Q 047029 341 -----DERIIVFTTNYK--E-----RLDPALLRPGRMDMHIHMSYLTPGGF----KILAFNYLKI 389 (455)
Q Consensus 341 -----~~~ivI~TTN~~--~-----~Ld~allRpGR~d~~I~~~~p~~~~~----~~L~~~~l~~ 389 (455)
-++-||++||.. + .+=+.|.- |+. ++.+..|.-.+| --|+.+|+..
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHH
Confidence 245699999863 1 12222222 442 345555555554 3566666653
No 256
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.00012 Score=75.78 Aligned_cols=159 Identities=19% Similarity=0.117 Sum_probs=98.7
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEeccccCChH
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASLRSNS 281 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~~~~~ 281 (455)
.++.|-+.....+.+++...+.. .-...+++.|-||||||.+..-+-..+ ....++++|.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~---------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL---------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc---------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45666655555555555443332 225679999999999999888665554 2355788888753211
Q ss_pred ---------------------HHHHHHHh----hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc
Q 047029 282 ---------------------DLRRLLVS----TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW 336 (455)
Q Consensus 282 ---------------------~l~~ll~~----~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 336 (455)
+..+.|.. .+.+-|+++||+|.+.. ..+.++-. |-.++.+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t-------------r~~~vLy~-lFewp~l- 285 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT-------------RSQTVLYT-LFEWPKL- 285 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh-------------cccceeee-ehhcccC-
Confidence 11222211 12367999999999863 11112211 2222332
Q ss_pred ccCCCceEEEEEcCCCCCCCccccC----CCceeEEEEeCCCCHHHHHHHHHHhhcccC
Q 047029 337 SSCGDERIIVFTTNYKERLDPALLR----PGRMDMHIHMSYLTPGGFKILAFNYLKIKS 391 (455)
Q Consensus 337 ~~~~~~~ivI~TTN~~~~Ld~allR----pGR~d~~I~~~~p~~~~~~~L~~~~l~~~~ 391 (455)
....+++|+..|..|.=|..|-| -+.-...+.|++.+.++..+|++.-+....
T Consensus 286 --p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~ 342 (529)
T KOG2227|consen 286 --PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES 342 (529)
T ss_pred --CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc
Confidence 23557888899987765554432 334456789999999999999998887653
No 257
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.03 E-value=2.4e-05 Score=87.74 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=108.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHH-hHHHHhhhcCCC-Cc-eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVK-RREFYSRVGKAW-KR-GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~-~~~~~~~~g~~~-~r-g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~ 278 (455)
.|.....+.+.......+.+.+..+-+ .+..|..-+... .. .+|++||||.|||+.+.+.|..+|+.++..+.+...
T Consensus 315 ~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R 394 (871)
T KOG1968|consen 315 QPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR 394 (871)
T ss_pred ccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccc
Confidence 344456777766666666666665411 112222222111 12 369999999999999999999999999999999887
Q ss_pred ChHHHHHHHHhhC--------------------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc
Q 047029 279 SNSDLRRLLVSTG--------------------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS 338 (455)
Q Consensus 279 ~~~~l~~ll~~~~--------------------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~ 338 (455)
+...+...+.... ...||++||+|-++. .. ...-..++++...
T Consensus 395 Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~d---------Rg~v~~l~~l~~k------- 457 (871)
T KOG1968|consen 395 SKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-ED---------RGGVSKLSSLCKK------- 457 (871)
T ss_pred cccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hh---------hhhHHHHHHHHHh-------
Confidence 7666655543321 124999999998753 11 1111223333331
Q ss_pred CCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 339 CGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 339 ~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
..+-+|+|+|.........+. |-+.-++|+.|+.++...-+..++..+
T Consensus 458 --s~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 458 --SSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred --ccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 235689999987776654444 544779999999999877777666544
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.99 E-value=3.6e-05 Score=72.46 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=33.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~ 276 (455)
|++...-++++||||||||+++..+|... +..++.++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67777889999999999999999988654 66777777754
No 259
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.99 E-value=1.4e-05 Score=76.15 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=54.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc-------------c---CChHHHHHHHHhh----CCceEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS-------------L---RSNSDLRRLLVST----GNRSILVIED 300 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~-------------~---~~~~~l~~ll~~~----~~~~IL~iDE 300 (455)
+..+|+||+||+|||++|+.+++. .-++..+.+. + ..-..+.+.+... ....+||||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 456999999999999999999742 1122222211 0 1112333333222 2467999999
Q ss_pred ccchhhhh----hhcCCCCC-CCCcchhhHhhhhhhhhcccccCCCceEEEE
Q 047029 301 IDCSIELE----NRQCGGGY-DENNSQVTLSGLLNFVDGLWSSCGDERIIVF 347 (455)
Q Consensus 301 iD~l~~~~----~~~~~~~~-~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~ 347 (455)
|+.+...- .+...... ........-..+++.+..+.+ .+.++++++
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~-~g~nII~tA 140 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE-SNKNIYATA 140 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh-CCCcEEEEE
Confidence 99764311 22211111 111223334456666666644 344555555
No 260
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.98 E-value=5.2e-05 Score=75.06 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccccCChHHHH-HH
Q 047029 217 QALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELASLRSNSDLR-RL 286 (455)
Q Consensus 217 ~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~~~~~~~l~-~l 286 (455)
+++++.+...+..|. ..-..++||+|++|.|||++++..+... ..+++.+....--+...+- .+
T Consensus 43 ~~~L~~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 456666776666653 1223589999999999999999999765 2466666654332221111 11
Q ss_pred H-----------------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCce
Q 047029 287 L-----------------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDER 343 (455)
Q Consensus 287 l-----------------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ 343 (455)
+ ...-+..+|+|||++.++.. .. .....++|.+-.+.....=.+
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG----------s~---~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG----------SY---RKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc----------cH---HHHHHHHHHHHHHhhccCCCe
Confidence 1 12234579999999987641 11 112344454444422222223
Q ss_pred EEEEEcC--CCCCCCccccCCCceeEEEEeCC-CCHHHHHHHHHHhh
Q 047029 344 IIVFTTN--YKERLDPALLRPGRMDMHIHMSY-LTPGGFKILAFNYL 387 (455)
Q Consensus 344 ivI~TTN--~~~~Ld~allRpGR~d~~I~~~~-p~~~~~~~L~~~~l 387 (455)
+.|+|-. ..=.-|+-+-+ ||+. +.+|. -.-+++..|+..+-
T Consensus 184 V~vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e 227 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFE 227 (302)
T ss_pred EEeccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHH
Confidence 3343332 22234677777 9964 44543 33345666666554
No 261
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.97 E-value=4e-05 Score=80.39 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=59.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLR 284 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~ 284 (455)
.+.+.......+.+.+..+. .....++++|.+||||+++++++.... +.+++.++|..+.. ..+.
T Consensus 140 ~lig~s~~~~~~~~~i~~~~-----------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~ 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVA-----------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLE 207 (441)
T ss_pred ceEecCHHHHHHHHHHhhcc-----------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHH
Confidence 34555555555555553221 124679999999999999999998766 46899999997643 4444
Q ss_pred HHHHh------------------hCCceEEEEecccchhh
Q 047029 285 RLLVS------------------TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 285 ~ll~~------------------~~~~~IL~iDEiD~l~~ 306 (455)
..+.. ...+++||||||+.+..
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~ 247 (441)
T PRK10365 208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 (441)
T ss_pred HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH
Confidence 43321 12467899999998853
No 262
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=6.8e-06 Score=70.23 Aligned_cols=31 Identities=39% Similarity=0.738 Sum_probs=27.7
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
|++.||||+||||+++.+|+.+|+.++.++-
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 263
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.94 E-value=1.8e-05 Score=84.33 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=50.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CCcEEEEec
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDMEL 274 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~~ 274 (455)
..-|+++.|.++++++|++.+.....+ + ...++-++|.||||+|||+|+++||+.+ .+++|.+..
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~g------l-~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQG------L-EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHh------c-CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 345889999999999999877644432 1 1235678999999999999999999988 567776644
No 264
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.93 E-value=2.4e-05 Score=81.38 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
...+..++|....-.++++.++..... .-.|||.|..||||..+|++|.+.. +.+++.+||..+-
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S-----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP- 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS-----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP- 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC-----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc-
Confidence 346788999999988898888754433 4589999999999999999999987 5789999998872
Q ss_pred hHHHH-HHH-----------------HhhCCceEEEEecccchh
Q 047029 280 NSDLR-RLL-----------------VSTGNRSILVIEDIDCSI 305 (455)
Q Consensus 280 ~~~l~-~ll-----------------~~~~~~~IL~iDEiD~l~ 305 (455)
++-+. ++| .+..++.-||+|||..+.
T Consensus 287 esLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP 330 (550)
T COG3604 287 ESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP 330 (550)
T ss_pred hHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC
Confidence 11121 122 122356799999999764
No 265
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.90 E-value=4e-05 Score=75.19 Aligned_cols=92 Identities=16% Similarity=0.202 Sum_probs=60.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-----cEEE-----Eecccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF-----DIYD-----MELASL 277 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~-----~v~~-----l~~~~~ 277 (455)
.|.|++-+++.|+..+..++.++. -..|--+=|||++||||+..++.||+.+-. +++. .++..-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 578899999999999999887753 111335678899999999999999998721 1111 111111
Q ss_pred CC----hHHHHHHHHh---hCCceEEEEecccchh
Q 047029 278 RS----NSDLRRLLVS---TGNRSILVIEDIDCSI 305 (455)
Q Consensus 278 ~~----~~~l~~ll~~---~~~~~IL~iDEiD~l~ 305 (455)
.. ..+|+..+.. ...++|+++||+|.+-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 11 1233333322 2468999999999874
No 266
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=79.35 Aligned_cols=98 Identities=18% Similarity=0.292 Sum_probs=59.3
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcE-EEEecccc-----------CCh-HHHHHHHHhh-CCceEEEEecccch
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDI-YDMELASL-----------RSN-SDLRRLLVST-GNRSILVIEDIDCS 304 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v-~~l~~~~~-----------~~~-~~l~~ll~~~-~~~~IL~iDEiD~l 304 (455)
.+++|++||||-|+|||+|....-..+...- ..+..... .+. ..+..+-.+. .+-.||+|||+.--
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~Vt 142 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFEVT 142 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeeeec
Confidence 4578999999999999999999888774321 11111110 010 1111111111 23469999999742
Q ss_pred hhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC-CCCC
Q 047029 305 IELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY-KERL 355 (455)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~-~~~L 355 (455)
+-.....++.|++.+-. .++++|+|+|. |+.|
T Consensus 143 -------------DI~DAMiL~rL~~~Lf~------~GV~lvaTSN~~P~~L 175 (367)
T COG1485 143 -------------DIADAMILGRLLEALFA------RGVVLVATSNTAPDNL 175 (367)
T ss_pred -------------ChHHHHHHHHHHHHHHH------CCcEEEEeCCCChHHh
Confidence 22345677777777543 46899999994 4443
No 267
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.86 E-value=6.5e-05 Score=70.27 Aligned_cols=114 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred eEEECCCCCChHHHHHHH-HHHc---CCcEEEEeccccC-----C---------------------hHHHHHHHHhhCCc
Q 047029 244 YLLYGPPGTGKSSLIAAM-ANYL---KFDIYDMELASLR-----S---------------------NSDLRRLLVSTGNR 293 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~al-A~~l---~~~v~~l~~~~~~-----~---------------------~~~l~~ll~~~~~~ 293 (455)
++++|.||+|||..|-.. .... |.+++. +...+. . ...+ ........+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDP-DDWRKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGH-HHHTTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhh-hhhcccCCC
Confidence 688999999999887655 4332 556554 433221 0 0111 122223368
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCC
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~ 373 (455)
+||+|||+...++.+... .......++++.... -.+.-||++|-++..||+.+++ +++.++++..
T Consensus 81 ~liviDEa~~~~~~r~~~----------~~~~~~~~~~l~~hR---h~g~diiliTQ~~~~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWK----------GKKVPEIIEFLAQHR---HYGWDIILITQSPSQIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp -EEEETTGGGTSB---T-----------T----HHHHGGGGCC---CTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE
T ss_pred cEEEEECChhhcCCCccc----------cccchHHHHHHHHhC---cCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEe
Confidence 999999999987622110 001122334443221 2457789999999999999987 9999988765
Q ss_pred C
Q 047029 374 L 374 (455)
Q Consensus 374 p 374 (455)
+
T Consensus 146 ~ 146 (193)
T PF05707_consen 146 L 146 (193)
T ss_dssp -
T ss_pred e
Confidence 4
No 268
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.85 E-value=1.6e-05 Score=72.11 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+++..++|+||||||||++++++|+.+++++++.+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 34678999999999999999999999999888654
No 269
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=3.3e-05 Score=70.90 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=61.5
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchh
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQV 323 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~ 323 (455)
+++.|+||+||||+++.++..++.+++.+|.-..... . .+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~--------------~---~~~---------------------- 43 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN--------------W---QER---------------------- 43 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc--------------c---ccC----------------------
Confidence 7899999999999999999999988776553221100 0 000
Q ss_pred hHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 324 TLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 324 ~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
....++..++.... .+. .|+-.|+...+-+..+. ++|..|.+..|.......++++.+.
T Consensus 44 ~~~~~~~~~~~~~~---~~~-wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 44 DDDDMIADISNFLL---KHD-WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred CHHHHHHHHHHHHh---CCC-EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 01112222222211 123 44555554433344445 7899999999998888888888764
No 270
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.85 E-value=0.00014 Score=75.19 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=40.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccch
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCS 304 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l 304 (455)
+.++++.||+|||||+++.+++.+. | .......+-.+- -.+.+.......+|+|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCC
Confidence 5699999999999999999998872 3 111122211100 0133444567899999999975
No 271
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=4.9e-05 Score=78.02 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=64.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----C-CcEEEEecccc----------------------CChHHHHHHHHhhCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----K-FDIYDMELASL----------------------RSNSDLRRLLVSTGNR 293 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~-~~v~~l~~~~~----------------------~~~~~l~~ll~~~~~~ 293 (455)
+..++|.||+|+||||++..||..+ | ..+..+..... ....++...+....+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4579999999999999999999864 3 23433333221 2334566666667778
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCcccc
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALL 360 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~all 360 (455)
.+|+||...... ....+.+.+..+.+.... -...+|+-+|+..+.++..+.
T Consensus 217 DlVLIDTaG~~~---------------~d~~l~e~La~L~~~~~~-~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 217 HMVLIDTIGMSQ---------------RDRTVSDQIAMLHGADTP-VQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CEEEEcCCCCCc---------------ccHHHHHHHHHHhccCCC-CeEEEEecCccChHHHHHHHH
Confidence 999999997531 123355556666543221 122445556667766665443
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=7.4e-05 Score=67.13 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.--+.+.||||+||||++.-+|+.|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999888
No 273
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00028 Score=73.01 Aligned_cols=65 Identities=26% Similarity=0.456 Sum_probs=45.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC-------CcEEEEecccc----------------------CChHHHHHHHHhh
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK-------FDIYDMELASL----------------------RSNSDLRRLLVST 290 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~-------~~v~~l~~~~~----------------------~~~~~l~~ll~~~ 290 (455)
.++.++|+||+|+||||++.-+|..+. ..+..+.+... .....+.+.+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456799999999999999999998762 33333332221 1234555656666
Q ss_pred CCceEEEEecccch
Q 047029 291 GNRSILVIEDIDCS 304 (455)
Q Consensus 291 ~~~~IL~iDEiD~l 304 (455)
....+|+||.++.+
T Consensus 253 ~~~DlVLIDTaGr~ 266 (388)
T PRK12723 253 KDFDLVLVDTIGKS 266 (388)
T ss_pred CCCCEEEEcCCCCC
Confidence 67789999999865
No 274
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.78 E-value=2.6e-05 Score=85.14 Aligned_cols=163 Identities=17% Similarity=0.141 Sum_probs=92.7
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhc-CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc----cC---
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVG-KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS----LR--- 278 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g-~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~----~~--- 278 (455)
.++.|.+++|+.|.=.|- -.-+....+-+ +...-++||.|.||||||.|.+.+++.+...+|.---++ +.
T Consensus 286 PsIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 356677777777643321 11000000000 111235999999999999999999999987777532211 10
Q ss_pred -ChHHHHHHHHh-----hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhc---------ccccCCCce
Q 047029 279 -SNSDLRRLLVS-----TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDG---------LWSSCGDER 343 (455)
Q Consensus 279 -~~~~l~~ll~~-----~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~~~ 343 (455)
......+...+ ...++|.+|||+|.+-. .....+...|+. +...-+...
T Consensus 364 ~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~----------------~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 364 VRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNE----------------EDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred EEccCCCeEEEeCCEEEEecCCEEEEEeccCCCh----------------HHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 00101111111 13578999999997632 223445555552 111112233
Q ss_pred EEEEEcCCCC-------------CCCccccCCCceeEEEEe-CCCCHHHHHHHHHHhhcc
Q 047029 344 IIVFTTNYKE-------------RLDPALLRPGRMDMHIHM-SYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 344 ivI~TTN~~~-------------~Ld~allRpGR~d~~I~~-~~p~~~~~~~L~~~~l~~ 389 (455)
-|++++|++. .|+++|+. |||+..-+ ..|+++.=+.++.+.+..
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHH
Confidence 4788888764 37889999 99987655 567776555555555543
No 275
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00011 Score=70.53 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-+-|.||+|||||||.+.+|...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999876
No 276
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.75 E-value=0.00065 Score=70.22 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=54.2
Q ss_pred EEEEEcC--CCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC---------------------CCchHHHHH
Q 047029 344 IIVFTTN--YKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS---------------------HSMFDEIEE 400 (455)
Q Consensus 344 ivI~TTN--~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~---------------------~~l~~ei~~ 400 (455)
+|+.|++ ....|..||-. |.-..|.++.++++.-+......|+... .....++..
T Consensus 186 VIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~ 263 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDE 263 (431)
T ss_pred EEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHH
Confidence 3444444 33456666644 7778999999999999998888886541 124456666
Q ss_pred hhcc--ccCchhHHHh----ccCCHHHHHHHHHH
Q 047029 401 LIKE--VEVTPAEEFM----KSEDADVALNGLVD 428 (455)
Q Consensus 401 ll~~--~~~tpa~~l~----~~~~~~~al~~l~~ 428 (455)
.+.. ..++-.+.++ ...+|+.|++++++
T Consensus 264 ~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 264 CIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6553 2334334333 46899999998875
No 277
>PRK08118 topology modulation protein; Reviewed
Probab=97.75 E-value=5.5e-05 Score=69.19 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=29.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.+++.||||+||||+++.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999988874
No 278
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.74 E-value=0.00034 Score=72.84 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=79.1
Q ss_pred hhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcE-EEEeccccCChHHHHH---HHHhhC--CceEEEEecccchhhhh
Q 047029 235 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDI-YDMELASLRSNSDLRR---LLVSTG--NRSILVIEDIDCSIELE 308 (455)
Q Consensus 235 ~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v-~~l~~~~~~~~~~l~~---ll~~~~--~~~IL~iDEiD~l~~~~ 308 (455)
.....++ -++++||.+||||++++-+...+.-.+ +...+........+.+ .+.... .+..||||||.++-
T Consensus 32 ~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~--- 107 (398)
T COG1373 32 KLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP--- 107 (398)
T ss_pred hcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCch---
Confidence 3344444 899999999999999988888875543 3333333333333322 222222 44899999999863
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC-CCCccccCCCceeEEEEeCCCCHHHHHH------
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE-RLDPALLRPGRMDMHIHMSYLTPGGFKI------ 381 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~-~Ld~allRpGR~d~~I~~~~p~~~~~~~------ 381 (455)
.....+..+.+. . ...++|.++|..- ....+-.=+||. ..+++.+.++.++..
T Consensus 108 -----------~W~~~lk~l~d~---~-----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~ 167 (398)
T COG1373 108 -----------DWERALKYLYDR---G-----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEI 167 (398)
T ss_pred -----------hHHHHHHHHHcc---c-----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhccccc
Confidence 223333333332 1 1135555555432 222333446794 789999999999854
Q ss_pred -------HHHHhhccc
Q 047029 382 -------LAFNYLKIK 390 (455)
Q Consensus 382 -------L~~~~l~~~ 390 (455)
++..|+...
T Consensus 168 ~~~~~~~~f~~Yl~~G 183 (398)
T COG1373 168 EPSKLELLFEKYLETG 183 (398)
T ss_pred chhHHHHHHHHHHHhC
Confidence 677777654
No 279
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.74 E-value=0.00036 Score=65.45 Aligned_cols=64 Identities=22% Similarity=0.421 Sum_probs=40.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC----------ChHHHHHHHHhh-----------CCceEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR----------SNSDLRRLLVST-----------GNRSIL 296 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~----------~~~~l~~ll~~~-----------~~~~IL 296 (455)
.+-.++.||||||||+++++++..+ +..++.+..+.-. ....+..++... .+..+|
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl 97 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL 97 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence 4568899999999999999998776 5677766554321 112222332211 234799
Q ss_pred EEecccch
Q 047029 297 VIEDIDCS 304 (455)
Q Consensus 297 ~iDEiD~l 304 (455)
+|||+..+
T Consensus 98 iVDEasmv 105 (196)
T PF13604_consen 98 IVDEASMV 105 (196)
T ss_dssp EESSGGG-
T ss_pred EEeccccc
Confidence 99999875
No 280
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.73 E-value=5.4e-05 Score=80.54 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=103.2
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhc--CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc------
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL------ 277 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~------ 277 (455)
|..+.|.+.+|.-|.-.+ +-+-..+..-| +...-++++.|.||||||-+.++.++.+...+|..--++-
T Consensus 344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 667888888888875433 22222222212 2223469999999999999999999999888876432211
Q ss_pred --CChHHHHHHHHhh-----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhc---------ccccCCC
Q 047029 278 --RSNSDLRRLLVST-----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDG---------LWSSCGD 341 (455)
Q Consensus 278 --~~~~~l~~ll~~~-----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg---------~~~~~~~ 341 (455)
..++.-.+...++ ....|-+|||+|.+-. .. .-.++++|+. +...-+.
T Consensus 421 aVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~-------------~d---qvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 421 AVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDV-------------KD---QVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred EEEecCCCCceeeecCcEEEccCceEEechhcccCh-------------Hh---HHHHHHHHHhheehheecceEEeecc
Confidence 0001001111111 2467999999998621 11 2335666652 2222233
Q ss_pred ceEEEEEcCCCC-------------CCCccccCCCceeEE-EEeCCCCHHHHHHHHHHhhccc
Q 047029 342 ERIIVFTTNYKE-------------RLDPALLRPGRMDMH-IHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 342 ~~ivI~TTN~~~-------------~Ld~allRpGR~d~~-I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
..-|++++|+.. .+++++++ |||.. |-++.|++..=..|+++.+..+
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 345888888662 47899999 99965 5678999998888888887653
No 281
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.72 E-value=0.00024 Score=67.43 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=31.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|++..+-++++||||||||+++..+|... +.+++.++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 67777779999999999999999999765 556666654
No 282
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.71 E-value=0.00021 Score=68.15 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=32.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
|++...-++++||||+|||+++..+|... +..++.++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 67777779999999999999999999755 6777777766
No 283
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.71 E-value=0.00028 Score=64.81 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=23.6
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+|++||||||||+++..++... |..+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6899999999999999887654 55555544
No 284
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.70 E-value=0.00015 Score=68.99 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=57.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH-----cCCcE---------EEEeccccCC--------------hHHHHHHHHhhCCc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY-----LKFDI---------YDMELASLRS--------------NSDLRRLLVSTGNR 293 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~-----l~~~v---------~~l~~~~~~~--------------~~~l~~ll~~~~~~ 293 (455)
+.++|.||.|+|||++.+.++.. .|..+ ++-....+.. -..+..++.....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 67999999999999999999832 23221 1111111111 12333334445689
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccc
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPAL 359 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~al 359 (455)
++++|||+..-.+ ..+.......++..+ ......+..+|++|+..+.+....
T Consensus 110 slvllDE~~~gtd-----------~~~~~~~~~ail~~l---~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 110 SLVLIDEFGKGTD-----------TEDGAGLLIATIEHL---LKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred cEEEeccccCCCC-----------HHHHHHHHHHHHHHH---HhcCCCCcEEEEEcChHHHHHhhh
Confidence 9999999975321 111122223344443 111012357888998876655444
No 285
>PF14516 AAA_35: AAA-like domain
Probab=97.70 E-value=0.00061 Score=69.21 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=79.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC-----h--------------------------------
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS-----N-------------------------------- 280 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~-----~-------------------------------- 280 (455)
..-+.++||..+||||+...+.+.+ |+..+.+++..+.+ .
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4568899999999999999998776 77888888766421 0
Q ss_pred HHH----HH-HHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCC-----Cc-eEEEEEc
Q 047029 281 SDL----RR-LLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCG-----DE-RIIVFTT 349 (455)
Q Consensus 281 ~~l----~~-ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~-----~~-~ivI~TT 349 (455)
..+ .+ ++....+|-||+|||||.+++. . .....++..+-....... .. +++++.+
T Consensus 111 ~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~-----------~---~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~ 176 (331)
T PF14516_consen 111 ISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY-----------P---QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGS 176 (331)
T ss_pred hhHHHHHHHHHHhcCCCCEEEEEechhhhccC-----------c---chHHHHHHHHHHHHHhcccCcccceEEEEEecC
Confidence 011 11 1122346789999999998741 1 112233333322211110 11 2333333
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
..+......-..|-.+...|+++.-+.++...|++.|-
T Consensus 177 t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 177 TEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 22222222224555667789999999999999998874
No 286
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.69 E-value=0.00029 Score=67.75 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=30.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|++.+..++++||||||||+++..++... +..++.+..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 77888889999999999999999997553 555555543
No 287
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.69 E-value=0.00021 Score=81.97 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=88.9
Q ss_pred CCCCceeEEECCCCCChHHH-HHHHHHHcCCcEEEEeccccCChHHHHHHHH-hhC------------C----ceEEEEe
Q 047029 238 KAWKRGYLLYGPPGTGKSSL-IAAMANYLKFDIYDMELASLRSNSDLRRLLV-STG------------N----RSILVIE 299 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsl-a~alA~~l~~~v~~l~~~~~~~~~~l~~ll~-~~~------------~----~~IL~iD 299 (455)
....|+|+++||||+|||++ .-++-+++-+.+..++.+.-.........+. .+. + .-|||.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 34478999999999999984 6788888899999999887654443444443 221 1 2489999
Q ss_pred cccchhhhhhhcCCCCCCCCcchhh-HhhhhhhhhcccccCC------CceEEEEEcCCCCCC-----CccccCCCceeE
Q 047029 300 DIDCSIELENRQCGGGYDENNSQVT-LSGLLNFVDGLWSSCG------DERIIVFTTNYKERL-----DPALLRPGRMDM 367 (455)
Q Consensus 300 EiD~l~~~~~~~~~~~~~~~~~~~~-ls~LL~~ldg~~~~~~------~~~ivI~TTN~~~~L-----d~allRpGR~d~ 367 (455)
||. +.. .+.- -.+.... +..|+. -.|+|+... .++++++++|++... .+.++| | ..
T Consensus 1571 eIn-Lp~--~~~y-----~~~~vI~FlR~l~e-~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r--~-~v 1638 (3164)
T COG5245 1571 EIN-LPY--GFEY-----YPPTVIVFLRPLVE-RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR--K-PV 1638 (3164)
T ss_pred ccC-Ccc--cccc-----CCCceEEeeHHHHH-hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--C-ce
Confidence 998 321 0000 0111111 112222 245665432 447888899987542 244554 3 36
Q ss_pred EEEeCCCCHHHHHHHHHHhhcc
Q 047029 368 HIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 368 ~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.|++.||.-....++...++..
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHH
Confidence 7899999999999888877653
No 288
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.67 E-value=7e-05 Score=64.89 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=41.9
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.|.|++-+++.|++.+..++..+. -..|--+-|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 578999999999999999887642 1112345689999999999999999986
No 289
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.64 E-value=0.00025 Score=69.55 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=43.9
Q ss_pred eEEEEEcCC------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 343 RIIVFTTNY------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 343 ~ivI~TTN~------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
.++|++||+ |..++-.|+. |+ ..|...+.+.++.++|++..+..++..+.++.-.++..
T Consensus 318 PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~ 388 (454)
T KOG2680|consen 318 PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTK 388 (454)
T ss_pred cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHH
Confidence 366666663 4678888888 88 56777777788889999988888887777776666543
No 290
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.64 E-value=0.00023 Score=66.29 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=39.8
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhccccC-----chhHHHhccCCHHHHHHHHHHHHHHhh
Q 047029 367 MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVEV-----TPAEEFMKSEDADVALNGLVDFLLRKK 434 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~~-----tpa~~l~~~~~~~~al~~l~~~l~~~~ 434 (455)
..|++.+|+.+.+.+-+... +....++|.+.+..... .-+..++.+++.+.+.+.+...+..++
T Consensus 118 ~~Ifi~pps~e~l~~RL~~R----~~~s~e~i~~Rl~~~~~e~~~~~~~D~vI~N~dle~a~~ql~~ii~~~~ 186 (186)
T PRK14737 118 VTIFIEPPSEEEWEERLIHR----GTDSEESIEKRIENGIIELDEANEFDYKIINDDLEDAIADLEAIICGKK 186 (186)
T ss_pred EEEEEECCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHHHHHHHHhcCC
Confidence 57899999977765543322 23344566666654211 011445567799999999988887653
No 291
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.62 E-value=0.00029 Score=66.25 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=64.9
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGY 316 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~ 316 (455)
|....--++|.|+.|+|||++++.|+... +.-..........+. .+...-|+.+||++.+..
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~kd~~~----~l~~~~iveldEl~~~~k---------- 109 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDKDFLE----QLQGKWIVELDELDGLSK---------- 109 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCcHHHH----HHHHhHheeHHHHhhcch----------
Confidence 55555678999999999999999997662 111112222222222 223446899999987631
Q ss_pred CCCcchhhHhhhhhhh-hcc-------cccCCCceEEEEEcCCCCCC-CccccCCCceeEEEEeCC
Q 047029 317 DENNSQVTLSGLLNFV-DGL-------WSSCGDERIIVFTTNYKERL-DPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 317 ~~~~~~~~ls~LL~~l-dg~-------~~~~~~~~ivI~TTN~~~~L-d~allRpGR~d~~I~~~~ 373 (455)
.....+..++..- |.. ....+...++|+|||..+-| |+.--| || ..|+++.
T Consensus 110 ---~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 110 ---KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ---hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1112333333221 111 11112335789999987744 556667 88 6677665
No 292
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.62 E-value=0.00025 Score=66.76 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=57.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CCcEE-----------EEecc---ccC--------ChHHHHHHHHhhC--
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDIY-----------DMELA---SLR--------SNSDLRRLLVSTG-- 291 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~-----------~l~~~---~~~--------~~~~l~~ll~~~~-- 291 (455)
.+.++|.||+|+||||+++.++... |.++- ....+ ++. ...++.+++....
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~ 104 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKG 104 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCC
Confidence 4679999999999999999998533 43321 00110 000 1144666777777
Q ss_pred CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 292 NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
.|.++++||.-.-.+ ..........+++.+.. .+..+|++|++.+.+
T Consensus 105 ~p~llllDEp~~glD-----------~~~~~~l~~~ll~~l~~------~~~tiiivTH~~~~~ 151 (199)
T cd03283 105 EPVLFLLDEIFKGTN-----------SRERQAASAAVLKFLKN------KNTIGIISTHDLELA 151 (199)
T ss_pred CCeEEEEecccCCCC-----------HHHHHHHHHHHHHHHHH------CCCEEEEEcCcHHHH
Confidence 899999999864322 11111222334444321 235678888876544
No 293
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=6e-05 Score=68.56 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=29.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
+++|.|+||||||++++.+|+.+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 58999999999999999999999999987764
No 294
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.60 E-value=0.00018 Score=70.63 Aligned_cols=91 Identities=23% Similarity=0.405 Sum_probs=59.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---CcEEEEecc-cc
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMELA-SL 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~~-~~ 277 (455)
.+.+++++...+...+.+.+.+...++. ..++++.||+|+||||+++++..++. ..++.++-. ++
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3447888887777666666666543332 56899999999999999999999883 344444311 11
Q ss_pred -------------CChHHHHHHHHhh--CCceEEEEecccc
Q 047029 278 -------------RSNSDLRRLLVST--GNRSILVIEDIDC 303 (455)
Q Consensus 278 -------------~~~~~l~~ll~~~--~~~~IL~iDEiD~ 303 (455)
.....+.+++... .+|.+|++.||..
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1234566666554 3689999999974
No 295
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.59 E-value=0.00024 Score=65.21 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=46.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh-----------------------HHHHHHHHh-hCCceEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN-----------------------SDLRRLLVS-TGNRSILVI 298 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~-----------------------~~l~~ll~~-~~~~~IL~i 298 (455)
-+|+.||||+|||++|..++..++.+++.+........ .++.+++.. ..++.+++|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~VlI 82 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVLV 82 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEEe
Confidence 47999999999999999999999877777665443222 134444544 345678999
Q ss_pred ecccchhh
Q 047029 299 EDIDCSIE 306 (455)
Q Consensus 299 DEiD~l~~ 306 (455)
|-+..+..
T Consensus 83 D~Lt~~~~ 90 (170)
T PRK05800 83 DCLTTWVT 90 (170)
T ss_pred hhHHHHHH
Confidence 99887754
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.57 E-value=6.7e-05 Score=66.70 Aligned_cols=31 Identities=26% Similarity=0.433 Sum_probs=28.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+++|+||||+|||++++.+|..+++++++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999999988665
No 297
>PRK03839 putative kinase; Provisional
Probab=97.57 E-value=6.2e-05 Score=69.26 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=28.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
-++|.|+||+||||+++.+|+.+++++++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3789999999999999999999999987654
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.56 E-value=0.00034 Score=70.47 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=45.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc---------------------CChHHHHHHH---Hh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL---------------------RSNSDLRRLL---VS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~ll---~~ 289 (455)
|++..+-+++|||||||||+|+..++... +..+..++.... ....+...++ ..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777789999999999999987766544 455555543221 1111112222 22
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
.....+||||-+.++.+
T Consensus 131 ~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVP 147 (321)
T ss_pred ccCCcEEEEcchhhhcc
Confidence 24678999999998864
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.55 E-value=0.00074 Score=64.99 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=26.5
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
|++...-+++.||||||||+++..++..+ |..+..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 56667789999999999999975554433 44554444
No 300
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.54 E-value=0.00021 Score=65.50 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
.++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 301
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.54 E-value=0.00019 Score=72.96 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=67.4
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGY 316 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~ 316 (455)
|+|.+..++|||||+||||.++-++-+.++-.++..--+ .+ .-.|.......|-+|||+-...
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns----~S--hFWLqPL~d~Ki~llDDAT~~c----------- 320 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS----KS--HFWLQPLADAKIALLDDATYPC----------- 320 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGT----TS--CGGGGGGCT-SSEEEEEE-HHH-----------
T ss_pred CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCC----CC--cccccchhcCcEEEEcCCcccH-----------
Confidence 788889999999999999999999999998887653111 11 1122334455789999986421
Q ss_pred CCCcchhhHhhhhhhhhcccccCC---------CceEEEEEcCCCCCCCcc---ccCCCceeEEEEeCCCC
Q 047029 317 DENNSQVTLSGLLNFVDGLWSSCG---------DERIIVFTTNYKERLDPA---LLRPGRMDMHIHMSYLT 375 (455)
Q Consensus 317 ~~~~~~~~ls~LL~~ldg~~~~~~---------~~~ivI~TTN~~~~Ld~a---llRpGR~d~~I~~~~p~ 375 (455)
..-.=..|-|.+||-.-+.. ...-+++|||..=.-|+. |.+ |+ ..++|+.|=
T Consensus 321 ----W~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhS--Ri-~~f~F~n~~ 384 (432)
T PF00519_consen 321 ----WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHS--RI-TCFEFPNPF 384 (432)
T ss_dssp ----HHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCT--TE-EEEE--S-S
T ss_pred ----HHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhh--eE-EEEEcCCcc
Confidence 11222345688887532210 012477899954333443 335 77 567776653
No 302
>PRK00625 shikimate kinase; Provisional
Probab=97.53 E-value=8e-05 Score=68.54 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=29.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.++|.|+||+|||++++.+|+.++++++++|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 58999999999999999999999999988763
No 303
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.53 E-value=0.0008 Score=67.61 Aligned_cols=131 Identities=18% Similarity=0.273 Sum_probs=91.3
Q ss_pred ccccccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEE
Q 047029 195 ADAINLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYD 271 (455)
Q Consensus 195 w~~~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~ 271 (455)
...+.+++...|+.+++....-+.+++....+.-- .-.+|+.|..||||-.+|+|..... ..+|+.
T Consensus 192 ~~~~~~~~~~~F~~~v~~S~~mk~~v~qA~k~Aml-----------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFla 260 (511)
T COG3283 192 LQNVAAQDVSGFEQIVAVSPKMKHVVEQAQKLAML-----------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLA 260 (511)
T ss_pred HhhcccccccchHHHhhccHHHHHHHHHHHHhhcc-----------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeE
Confidence 34566777789999999888777777766544322 3368999999999999999987665 678999
Q ss_pred EeccccCChHHHHHHH------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhh-hccccc
Q 047029 272 MELASLRSNSDLRRLL------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFV-DGLWSS 338 (455)
Q Consensus 272 l~~~~~~~~~~l~~ll------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~l-dg~~~~ 338 (455)
++|..+-.+..=.++| .+..++.-+|+|||..+.+ .....||.++ ||...+
T Consensus 261 lNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp----------------~lQaKLLRFL~DGtFRR 324 (511)
T COG3283 261 LNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP----------------RLQAKLLRFLNDGTFRR 324 (511)
T ss_pred eecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH----------------HHHHHHHHHhcCCceee
Confidence 9999874332223333 3344567899999987643 3445566666 566555
Q ss_pred CCCc------eEEEEEcCCC
Q 047029 339 CGDE------RIIVFTTNYK 352 (455)
Q Consensus 339 ~~~~------~ivI~TTN~~ 352 (455)
-|++ +-||+||..+
T Consensus 325 VGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 325 VGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred cCCcceEEEEEEEEeccccc
Confidence 5543 5688888754
No 304
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.51 E-value=0.00038 Score=70.18 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=46.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc---------------------CChHHHHHHH---Hh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL---------------------RSNSDLRRLL---VS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~ll---~~ 289 (455)
|++..+-+.+|||||||||+|+..++... +..+..++...- .+..++..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 57777779999999999999999877544 556666654221 1112222222 22
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
.....+||||-+.++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 34678999999998864
No 305
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.51 E-value=0.00042 Score=65.90 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=30.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---C------CcEEEEecc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---K------FDIYDMELA 275 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~------~~v~~l~~~ 275 (455)
|++...-+.|+||||+|||+++..+|... + ..++.++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 67777789999999999999999998653 2 455666554
No 306
>PRK13949 shikimate kinase; Provisional
Probab=97.51 E-value=8.8e-05 Score=67.97 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=30.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
+.++|.||||+|||++++.+|+.+++++++++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 368999999999999999999999999988763
No 307
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.51 E-value=0.00055 Score=62.75 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=45.8
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-----------------------ChHHHHHHHHhhCCceEEEEec
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-----------------------SNSDLRRLLVSTGNRSILVIED 300 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-----------------------~~~~l~~ll~~~~~~~IL~iDE 300 (455)
+|+.||||+|||++|..++...+.+++++...... ...++.+.+...+.+.+++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 68999999999999999998887777777654321 1234555554444567899999
Q ss_pred ccchhh
Q 047029 301 IDCSIE 306 (455)
Q Consensus 301 iD~l~~ 306 (455)
+.....
T Consensus 82 lt~~~~ 87 (169)
T cd00544 82 LTLWVT 87 (169)
T ss_pred HhHHHH
Confidence 887654
No 308
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.51 E-value=5.4e-05 Score=66.46 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=23.8
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
+++.||||+||||+|+.+++.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999999994443
No 309
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.50 E-value=0.00056 Score=67.88 Aligned_cols=61 Identities=21% Similarity=0.372 Sum_probs=41.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----C-CcEEEEecccc----------------------CChHHHHHHHHhhCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----K-FDIYDMELASL----------------------RSNSDLRRLLVSTGNR 293 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~-~~v~~l~~~~~----------------------~~~~~l~~ll~~~~~~ 293 (455)
++.++|.||+|+||||++..+|..+ + ..+..+++... .....+.+.+......
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~ 273 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRDK 273 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccCC
Confidence 4468999999999999999999876 3 56655555432 1233455555555556
Q ss_pred eEEEEecc
Q 047029 294 SILVIEDI 301 (455)
Q Consensus 294 ~IL~iDEi 301 (455)
.+|+||..
T Consensus 274 d~vliDt~ 281 (282)
T TIGR03499 274 DLILIDTA 281 (282)
T ss_pred CEEEEeCC
Confidence 67777753
No 310
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.49 E-value=0.00021 Score=78.32 Aligned_cols=51 Identities=27% Similarity=0.368 Sum_probs=42.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
+|..|+.++|+++.++.|...+.. ++.++|+||||||||++++++|+.+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 367899999998888877654431 358999999999999999999998853
No 311
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.48 E-value=0.0011 Score=68.26 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=21.2
Q ss_pred eEEECCCCCChHHHHHHHHHHcC
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.+++||||+|||+|++.+++...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHH
Confidence 78899999999999999999774
No 312
>PRK04040 adenylate kinase; Provisional
Probab=97.47 E-value=0.00043 Score=64.60 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=25.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc--CCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL--KFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l--~~~v~ 270 (455)
++-++++|+|||||||+++.+++.+ ++.++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999999999999 55554
No 313
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.46 E-value=0.00066 Score=64.98 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~ 276 (455)
|++...-+.|+||||||||+++..+|... +..++.++...
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 67777779999999999999999998543 24666666543
No 314
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.45 E-value=0.00026 Score=71.17 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=43.5
Q ss_pred cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 211 MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 211 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
..++.++.+.+.++..+.... -.+++..+.|.|+||||||++++.+|..+|+++++++
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345556666666665443322 2455678999999999999999999999999999655
No 315
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0001 Score=67.34 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=31.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.+.+.|.|++|+||||+-+++|+.|+++|++.|-
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 3579999999999999999999999999998874
No 316
>PRK13948 shikimate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=67.34 Aligned_cols=34 Identities=26% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+++.++|.|++|+||||+++.+|+.++.++++.|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 4688999999999999999999999999999877
No 317
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.42 E-value=7.6e-05 Score=68.17 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=26.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc---EEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASL 277 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~ 277 (455)
++.++|+||+|+|||++++++...+..+ ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5789999999999999999998887433 666766654
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.0021 Score=67.50 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=43.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecccc----------------------CChHHHHHHHHhhCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASL----------------------RSNSDLRRLLVSTGNR 293 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~----------------------~~~~~l~~ll~~~~~~ 293 (455)
++.++|.||+|+||||++..+|..+ +..+..+++... .+..++...+......
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 4568999999999999999998765 345555554432 1223455555555567
Q ss_pred eEEEEecccc
Q 047029 294 SILVIEDIDC 303 (455)
Q Consensus 294 ~IL~iDEiD~ 303 (455)
.+|+||....
T Consensus 301 DlVlIDt~G~ 310 (424)
T PRK05703 301 DVILIDTAGR 310 (424)
T ss_pred CEEEEeCCCC
Confidence 8899998764
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.0005 Score=72.63 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=48.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC--------------------ChHHHHHHHHhh--C
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR--------------------SNSDLRRLLVST--G 291 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~--------------------~~~~l~~ll~~~--~ 291 (455)
|++...-+||+||||+|||+|+..+|... +..+++++..+-. ....+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 67777789999999999999999998866 5677766643210 011222333222 3
Q ss_pred CceEEEEecccchhh
Q 047029 292 NRSILVIEDIDCSIE 306 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~ 306 (455)
++.+|+||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 678999999998753
No 320
>PRK05973 replicative DNA helicase; Provisional
Probab=97.40 E-value=0.0013 Score=63.64 Aligned_cols=38 Identities=24% Similarity=0.001 Sum_probs=29.4
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|+++..-+++.|+||+|||+++..+|... |.+++.+.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 66667779999999999999998887654 666555443
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.40 E-value=0.00043 Score=62.84 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=21.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-+++.||+|||||+|.+++|...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 48999999999999999999876
No 322
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00015 Score=66.76 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=25.5
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+++.||||+||||+++.+|..+++..+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765543
No 323
>PRK14532 adenylate kinase; Provisional
Probab=97.39 E-value=0.00015 Score=67.09 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=26.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++.+|+.+|+..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999999877654
No 324
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.38 E-value=0.00016 Score=68.18 Aligned_cols=25 Identities=44% Similarity=0.834 Sum_probs=19.3
Q ss_pred Cce-eEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRG-YLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg-~LL~GPpGTGKTsla~alA~~l 265 (455)
..+ .++.||||||||+++.+++..+
T Consensus 16 ~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 16 SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 345 8999999999998777777666
No 325
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.38 E-value=0.0015 Score=68.53 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 214 VLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 214 ~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
.+.+.+.+.+...+.......... ..|..++++||+|+||||++..+|..+ |..+..+++.
T Consensus 69 ~~~~~v~~~L~~~l~~~~~~~~~~-~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 69 HVIKIVYEELVKLLGEETEPLVLP-LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred HHHHHHHHHHHHHhCCCccccccC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 345555555554443221111111 346789999999999999999999888 4555555543
No 326
>PRK06217 hypothetical protein; Validated
Probab=97.38 E-value=0.00016 Score=66.81 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=28.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.++|.|+||+||||+++++|+.++++++++|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999887665
No 327
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.38 E-value=0.001 Score=66.44 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=96.6
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHH---HHHcCCcEEEEecccc-CC----
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAM---ANYLKFDIYDMELASL-RS---- 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~al---A~~l~~~v~~l~~~~~-~~---- 279 (455)
.+.|..+..+.+.+.++.-+-..+ ...+++.||.|+|||.++... +++.|-+++.+.+... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456667777777777765554433 568999999999999877544 3367778777665432 11
Q ss_pred ----------------------hHHHHHHHHhh------C-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 280 ----------------------NSDLRRLLVST------G-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 280 ----------------------~~~l~~ll~~~------~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
...+.+++... + .+.|.++||+|-..+ ..+++ -|-|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~-------------h~rQt--llYn 160 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAP-------------HSRQT--LLYN 160 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhcccc-------------chhhH--HHHH
Confidence 12233333221 1 235677789997643 22233 2567
Q ss_pred hhhcccccCCCceEEEEEcCCCC---CCCccccCCCceeEE-EEeC-CCCHHHHHHHHHHhhccc
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKE---RLDPALLRPGRMDMH-IHMS-YLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~---~Ld~allRpGR~d~~-I~~~-~p~~~~~~~L~~~~l~~~ 390 (455)
.+|-..++. .++.||+-|.+-+ .|...... ||... |+|. ....++...+.++.+...
T Consensus 161 lfDisqs~r-~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll~v~ 222 (408)
T KOG2228|consen 161 LFDISQSAR-APICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLLSVP 222 (408)
T ss_pred HHHHHhhcC-CCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHhcCC
Confidence 777655442 4566776555544 44556666 88765 6664 456788999999988543
No 328
>PRK14531 adenylate kinase; Provisional
Probab=97.37 E-value=0.00019 Score=66.43 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=28.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
++-+++.||||+||||+++.+|..+|+..+..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 44699999999999999999999999887654
No 329
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.37 E-value=0.00081 Score=62.26 Aligned_cols=62 Identities=10% Similarity=0.074 Sum_probs=38.4
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhccccCch-----hHHHhccCCHHHHHHHHHHHHHH
Q 047029 367 MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVEVTP-----AEEFMKSEDADVALNGLVDFLLR 432 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~~tp-----a~~l~~~~~~~~al~~l~~~l~~ 432 (455)
..|++.+|+.+..++.+.... ....+++.+.+..+.... ....+-+++.+.+.+.|.+.+..
T Consensus 116 ~vIfi~~~s~~~l~~rl~~R~----~~~~~~i~~rl~~a~~~~~~~~~fd~~I~n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 116 IVIFIAPPSSEELERRLRGRG----TETAERIQKRLAAAQKEAQEYHLFDYVIVNDDLEDAYEELKEILEA 182 (184)
T ss_pred EEEEEeCcCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHHHHHHHHHh
Confidence 688999999887666665432 223344555444321111 13445678999999999888864
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.0006 Score=61.25 Aligned_cols=99 Identities=22% Similarity=0.292 Sum_probs=56.5
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCc--EEEEecccc-----------------CChHHHHHHH---HhhCCceEEE
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFD--IYDMELASL-----------------RSNSDLRRLL---VSTGNRSILV 297 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~--v~~l~~~~~-----------------~~~~~l~~ll---~~~~~~~IL~ 297 (455)
+..-+.|.||+|+|||+|++++++.+... -+.++...+ .+..+.+++. .-+..|.+++
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34578999999999999999999987422 111211110 1223333332 2234789999
Q ss_pred EecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCC
Q 047029 298 IEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLD 356 (455)
Q Consensus 298 iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 356 (455)
+||...-++ . .+...+.+.+...... +..+|++|++.+.+.
T Consensus 104 lDEp~~~lD------------~---~~~~~l~~~l~~~~~~---~~tii~~sh~~~~~~ 144 (157)
T cd00267 104 LDEPTSGLD------------P---ASRERLLELLRELAEE---GRTVIIVTHDPELAE 144 (157)
T ss_pred EeCCCcCCC------------H---HHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHH
Confidence 999986543 1 2223344444333221 356778887765443
No 331
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0024 Score=65.90 Aligned_cols=58 Identities=19% Similarity=0.300 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 213 PVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
..+++.+.+.+...+..+..+ ...++-++|.||+|+||||++..||..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~----~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF----EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc----ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 345666666665555433211 1224679999999999999999999877 344444443
No 332
>PF13479 AAA_24: AAA domain
Probab=97.35 E-value=0.00029 Score=66.90 Aligned_cols=60 Identities=32% Similarity=0.507 Sum_probs=38.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEecc-------------ccCChHHHHHHHHhh----CCceEEEEecccch
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELA-------------SLRSNSDLRRLLVST----GNRSILVIEDIDCS 304 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~-------------~~~~~~~l~~ll~~~----~~~~IL~iDEiD~l 304 (455)
-.++||||||+|||+++..+-+-+ +++++.+ .+.+-.++.+.+... ..-..||||-++.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l---~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPL---FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeE---EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 468999999999999999882222 2223222 112345566655332 34579999999865
No 333
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.34 E-value=0.00018 Score=63.94 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.8
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
++|.||||+||||+++.+++.++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 334
>PRK13946 shikimate kinase; Provisional
Probab=97.34 E-value=0.00018 Score=66.71 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=31.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
++.++|.|+||||||++++.+|+.+|+++++.|.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 5689999999999999999999999999998774
No 335
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.32 E-value=0.00046 Score=70.21 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.1
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+|+|++|||.-|||||+|.-..-..+
T Consensus 113 ~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 113 PPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCceEEEecccCcchhHHHHHHhhcC
Confidence 48999999999999999998766443
No 336
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.32 E-value=0.00018 Score=64.94 Aligned_cols=28 Identities=32% Similarity=0.615 Sum_probs=24.4
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
++|.||||+||||+++.+++.++..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999866543
No 337
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.32 E-value=0.00023 Score=65.32 Aligned_cols=34 Identities=38% Similarity=0.677 Sum_probs=30.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
++.++|.||+|+|||++++.+|+.+++++++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4579999999999999999999999999887764
No 338
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.31 E-value=0.00021 Score=62.78 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=28.0
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.+.|+||||||++++.+|..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999998776
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.30 E-value=0.0025 Score=65.74 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=46.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc--------------------CChHHHHHHHHh--hC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL--------------------RSNSDLRRLLVS--TG 291 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~--------------------~~~~~l~~ll~~--~~ 291 (455)
|+.+..-++|+||||+|||+++..+|..+ +..+++++..+- .....+..++.. ..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 57777789999999999999999998766 346666654321 011122223222 23
Q ss_pred CceEEEEecccchh
Q 047029 292 NRSILVIEDIDCSI 305 (455)
Q Consensus 292 ~~~IL~iDEiD~l~ 305 (455)
++.+|+||+|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999998875
No 340
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.29 E-value=0.00022 Score=65.98 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=26.2
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+++.||||+|||++++.||..+|+..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998777654
No 341
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.28 E-value=0.00089 Score=65.82 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---CcEEEEec------
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMEL------ 274 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~------ 274 (455)
.+++++.+.++..+.+.+.+. . ....+++.||+|+||||+++++..++. ..++.++-
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~----~----------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE----K----------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh----c----------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 467788877776666544332 1 123489999999999999999988773 33444421
Q ss_pred ccc-----C--ChHHHHHHHHhh--CCceEEEEecccc
Q 047029 275 ASL-----R--SNSDLRRLLVST--GNRSILVIEDIDC 303 (455)
Q Consensus 275 ~~~-----~--~~~~l~~ll~~~--~~~~IL~iDEiD~ 303 (455)
..+ . ....+...+... ..|.+|+++||..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 111 1 112233444333 3699999999963
No 342
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.28 E-value=0.0026 Score=65.14 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-.++.||||||||++++.+|+.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 369999999999999999999873
No 343
>PRK08233 hypothetical protein; Provisional
Probab=97.27 E-value=0.001 Score=60.70 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC-CcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK-FDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~-~~v~~l~~ 274 (455)
.-+.+.|+||+||||+++.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3467789999999999999999985 44444443
No 344
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.27 E-value=0.0046 Score=70.67 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=77.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh------------------------------------HHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN------------------------------------SDLR 284 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~------------------------------------~~l~ 284 (455)
.+-+++.||+|.|||+++...+...+ ++.-+.+..-.++ ..+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 45799999999999999999988776 5544444211000 0011
Q ss_pred HHHHh---hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCc-ccc
Q 047029 285 RLLVS---TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDP-ALL 360 (455)
Q Consensus 285 ~ll~~---~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~-all 360 (455)
.++.. ...|.+|||||++.+-+ ......+..|+. .. +.+..+|+|+.....+.- .+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~------------~~~~~~l~~l~~---~~----~~~~~lv~~sR~~~~~~~~~l~ 171 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN------------PEIHEAMRFFLR---HQ----PENLTLVVLSRNLPPLGIANLR 171 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC------------hHHHHHHHHHHH---hC----CCCeEEEEEeCCCCCCchHhHH
Confidence 22222 24688999999997621 111122223332 22 344555556654222221 111
Q ss_pred CCCceeEEEEeC----CCCHHHHHHHHHHhhcccCCCchHHHHHhhccccCchh
Q 047029 361 RPGRMDMHIHMS----YLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVEVTPA 410 (455)
Q Consensus 361 RpGR~d~~I~~~----~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~~tpa 410 (455)
..|. .+++. ..+.++-..++...++.. ...+++.++.+...--|+
T Consensus 172 ~~~~---~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 172 VRDQ---LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred hcCc---ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 1122 33444 668888888888766542 223455555554444444
No 345
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00025 Score=62.97 Aligned_cols=41 Identities=29% Similarity=0.543 Sum_probs=32.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDL 283 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l 283 (455)
..++|+.|-||||||+++.++|..+++..+.+ +.+..+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~vkEn~l 47 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLVKENNL 47 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHHhhhcc
Confidence 45899999999999999999999999887644 444333333
No 346
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.26 E-value=0.00091 Score=65.53 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=31.5
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
|++...-++++||||||||+++..+|... |.++..++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 67777789999999999999999886643 6677777665
No 347
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.26 E-value=0.0015 Score=62.09 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=22.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.-+.|+.|||||||||+.+-+|+.+.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhh
Confidence 34689999999999999999999873
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.25 E-value=0.00092 Score=61.76 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=40.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc--EEEEe---c----ccc-CChHHHHHHH---HhhCCceEEEEecccchh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD--IYDME---L----ASL-RSNSDLRRLL---VSTGNRSILVIEDIDCSI 305 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~--v~~l~---~----~~~-~~~~~l~~ll---~~~~~~~IL~iDEiD~l~ 305 (455)
..-+.|.||.|+|||||++.+++.+..+ -+.++ . ... .+..+-+++- .-..+|.++++||-..-+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4568899999999999999999976311 11111 0 110 2223333322 223579999999987544
No 349
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.24 E-value=0.00032 Score=63.85 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=29.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
..++|.|+||||||++++.+|+.+|+++++.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccH
Confidence 358899999999999999999999999987763
No 350
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.24 E-value=0.00091 Score=59.47 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=41.9
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCc---EE-----EEe-ccccCChHHHHHHH---HhhCCceEEEEecccchh
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD---IY-----DME-LASLRSNSDLRRLL---VSTGNRSILVIEDIDCSI 305 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~---v~-----~l~-~~~~~~~~~l~~ll---~~~~~~~IL~iDEiD~l~ 305 (455)
.....+.|.||+|+|||||++++++.+... ++ .+. ..+ .+..+.+++. .-..+|.++++||-..-+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 334568999999999999999999987321 11 000 011 2333444432 223579999999987644
No 351
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.23 E-value=0.0013 Score=61.68 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=40.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH-c----CCcE--------------EEEeccc-c--------CChHHHHHHHHhhCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY-L----KFDI--------------YDMELAS-L--------RSNSDLRRLLVSTGN 292 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~-l----~~~v--------------~~l~~~~-~--------~~~~~l~~ll~~~~~ 292 (455)
++-++|.||.|+|||++.++++.- + |..+ ..+...+ + .....+..++.....
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~ 108 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATP 108 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccC
Confidence 356999999999999999999932 2 2211 1111110 0 011334445555578
Q ss_pred ceEEEEecccch
Q 047029 293 RSILVIEDIDCS 304 (455)
Q Consensus 293 ~~IL~iDEiD~l 304 (455)
+.++++||...-
T Consensus 109 ~~llllDEp~~g 120 (202)
T cd03243 109 RSLVLIDELGRG 120 (202)
T ss_pred CeEEEEecCCCC
Confidence 999999999754
No 352
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.23 E-value=0.001 Score=66.54 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=41.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc-c----------c---CChHHHHHHHHhh--CCceEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA-S----------L---RSNSDLRRLLVST--GNRSILVIE 299 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~-~----------~---~~~~~l~~ll~~~--~~~~IL~iD 299 (455)
++++++.||+|+||||+++++++++. ..++.++-. + + .....+.+++... .+|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 56899999999999999999999872 333333211 0 0 0111455555443 368999999
Q ss_pred ccc
Q 047029 300 DID 302 (455)
Q Consensus 300 EiD 302 (455)
|+-
T Consensus 212 EiR 214 (299)
T TIGR02782 212 EVR 214 (299)
T ss_pred ccC
Confidence 986
No 353
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.0078 Score=58.00 Aligned_cols=125 Identities=11% Similarity=0.059 Sum_probs=91.8
Q ss_pred CceeEEECCCC-CChHHHHHHHHHHcC---------CcEEEEeccc-------cCChHHHHHHHHhh------CCceEEE
Q 047029 241 KRGYLLYGPPG-TGKSSLIAAMANYLK---------FDIYDMELAS-------LRSNSDLRRLLVST------GNRSILV 297 (455)
Q Consensus 241 ~rg~LL~GPpG-TGKTsla~alA~~l~---------~~v~~l~~~~-------~~~~~~l~~ll~~~------~~~~IL~ 297 (455)
...||+.|..+ +||..++.-++..+. -+++.+.... .-+-.++|++.... +...|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 35799999998 999999988888762 3455554321 12345666655433 2457999
Q ss_pred EecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHH
Q 047029 298 IEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPG 377 (455)
Q Consensus 298 iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~ 377 (455)
|+++|.+-. ...+.||..++. .+.+.++|++|..++.|.|.+++ |+ .++.+..|...
T Consensus 95 I~~ae~mt~----------------~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~ 151 (263)
T PRK06581 95 IYSAELMNL----------------NAANSCLKILED----APKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILH 151 (263)
T ss_pred EechHHhCH----------------HHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHH
Confidence 999998742 456778887765 34678888999999999999999 88 68999999998
Q ss_pred HHHHHHHHhhc
Q 047029 378 GFKILAFNYLK 388 (455)
Q Consensus 378 ~~~~L~~~~l~ 388 (455)
.-.++...++.
T Consensus 152 ~~~e~~~~~~~ 162 (263)
T PRK06581 152 AYNELYSQFIQ 162 (263)
T ss_pred HHHHHHHHhcc
Confidence 87777766654
No 354
>PRK04296 thymidine kinase; Provisional
Probab=97.22 E-value=0.0021 Score=59.97 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.2
Q ss_pred eeEEECCCCCChHHHHHHHHHHc---CCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL---KFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l---~~~v~~l 272 (455)
-.+++||||+|||+++..++..+ +..++.+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999998888876 5555544
No 355
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00034 Score=66.46 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=27.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.++|.||||+||||+++.||+.++++.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3689999999999999999999999877644
No 356
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.0015 Score=62.54 Aligned_cols=99 Identities=19% Similarity=0.293 Sum_probs=57.6
Q ss_pred CceeEEECCCCCChHHHHHHHHH-Hc----CCc---------EE-----EEecc-ccC--------ChHHHHHHHHhhCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN-YL----KFD---------IY-----DMELA-SLR--------SNSDLRRLLVSTGN 292 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~-~l----~~~---------v~-----~l~~~-~~~--------~~~~l~~ll~~~~~ 292 (455)
.+-++|.||.|+|||++.+.++. .+ |.. ++ .+... ++. .-.++..++.....
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999988 22 221 11 01101 111 11445666777788
Q ss_pred ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 293 RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 293 ~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
+++++|||+..-.. ..+.......+++.+-.. .+..+|++|++.+..
T Consensus 111 ~sLvllDE~~~gT~-----------~~d~~~i~~~il~~l~~~-----~~~~~i~~TH~~~l~ 157 (222)
T cd03287 111 RSLVILDELGRGTS-----------THDGIAIAYATLHYLLEE-----KKCLVLFVTHYPSLG 157 (222)
T ss_pred CeEEEEccCCCCCC-----------hhhHHHHHHHHHHHHHhc-----cCCeEEEEcccHHHH
Confidence 99999999864211 011112223344443321 245788899887654
No 357
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.21 E-value=0.008 Score=58.12 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=75.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC---cEEEEeccc---------------cCChHHHH-----------HHHHhh-
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF---DIYDMELAS---------------LRSNSDLR-----------RLLVST- 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~---~v~~l~~~~---------------~~~~~~l~-----------~ll~~~- 290 (455)
+-.+.+.||+|||||+++..+-..+.. +++.+.... +.....+. +.....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 457899999999999999999887743 122221100 00111111 111111
Q ss_pred ----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCcee
Q 047029 291 ----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMD 366 (455)
Q Consensus 291 ----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d 366 (455)
..+.+|++||+..- ...+..+..+++. |- .-++.+|+.+...-.|++.++. -++
T Consensus 93 ~~k~~~~~LiIlDD~~~~--------------~~k~~~l~~~~~~--gR----H~~is~i~l~Q~~~~lp~~iR~--n~~ 150 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK--------------KLKSKILRQFFNN--GR----HYNISIIFLSQSYFHLPPNIRS--NID 150 (241)
T ss_pred ccCCCCCeEEEEeCCCCc--------------hhhhHHHHHHHhc--cc----ccceEEEEEeeecccCCHHHhh--cce
Confidence 12689999997531 1112344555542 22 1347788888888899999877 788
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 047029 367 MHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
.++-+. -+....+.+++++..
T Consensus 151 y~i~~~-~s~~dl~~i~~~~~~ 171 (241)
T PF04665_consen 151 YFIIFN-NSKRDLENIYRNMNI 171 (241)
T ss_pred EEEEec-CcHHHHHHHHHhccc
Confidence 777775 467778888777654
No 358
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.00042 Score=62.72 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=27.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.-++|.|+||+||||+++.+++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 456899999999999999999999965555554
No 359
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=97.21 E-value=0.0016 Score=65.77 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceE
Q 047029 216 KQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSI 295 (455)
Q Consensus 216 k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~I 295 (455)
.+.|.+.|+.... ++|.+|++||-||-.|||||+|+|+-+.+|-....+++.. ..|.--|.-+-..-.
T Consensus 138 ~~~i~~iL~~lv~--------N~PKkRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~----dkl~FELG~AiDQfm 205 (417)
T PF06431_consen 138 DDVILEILKCLVE--------NIPKKRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP----DKLNFELGCAIDQFM 205 (417)
T ss_dssp HHHHHHHHHHHHH--------TBTTB-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-T----TTHHHHHCCCTT-SE
T ss_pred HHHHHHHHHHHhc--------CCCcceeEEEecCcCCchHHHHHHHHHhcCCceeecCCCh----hhcchhhheeeceEE
Confidence 3445555554444 4677899999999999999999999999987776666553 233333333335668
Q ss_pred EEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC-----CCce-----EEEEEcCCCCCCCccccCCCce
Q 047029 296 LVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC-----GDER-----IIVFTTNYKERLDPALLRPGRM 365 (455)
Q Consensus 296 L~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~-----~~~~-----ivI~TTN~~~~Ld~allRpGR~ 365 (455)
+++||+---.. ....-..+..-..+..|-..+||-..-. -..+ --|+|+|. ..|+..+.- ||
T Consensus 206 VvFEDVKGq~~-----~~~~Lp~G~G~~NLDNLRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~v--Rf 277 (417)
T PF06431_consen 206 VVFEDVKGQPS-----DNKDLPPGQGMNNLDNLRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKV--RF 277 (417)
T ss_dssp EEEEEE--SST-----TTTT----SHHHHHHTTHHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHT--TE
T ss_pred EEEEecCCCcC-----CCCCCCCCCCcccchhhhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceee--ee
Confidence 88998752110 1111112334455667777888753211 0011 25678885 356788887 99
Q ss_pred eEEEEeCCCCHHHHH
Q 047029 366 DMHIHMSYLTPGGFK 380 (455)
Q Consensus 366 d~~I~~~~p~~~~~~ 380 (455)
...+.|.. ....++
T Consensus 278 ~~~~~F~~-k~~l~~ 291 (417)
T PF06431_consen 278 CKVLDFRP-KPNLRK 291 (417)
T ss_dssp EEEEE-----HHHHH
T ss_pred EeeEeccc-cHHHHH
Confidence 88888754 333333
No 360
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.0012 Score=59.06 Aligned_cols=164 Identities=20% Similarity=0.318 Sum_probs=88.1
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCC
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDE 318 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~ 318 (455)
+.+-.+++-|++||||||++++++.+++++|++ ..++.+..+..+.=..++ +.|=|..
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~d--gDd~Hp~~NveKM~~Gip------LnD~DR~-------------- 67 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFID--GDDLHPPANVEKMTQGIP------LNDDDRW-------------- 67 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccc--cccCCCHHHHHHHhcCCC------CCccccc--------------
Confidence 345578889999999999999999999988864 445666666655533221 1111111
Q ss_pred CcchhhHhhhhhhhhcccccCCCceEEEEEcC----CCCCCCcccc--CCCcee-EEEEeCCCCHHHHHHHHHHhhcccC
Q 047029 319 NNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN----YKERLDPALL--RPGRMD-MHIHMSYLTPGGFKILAFNYLKIKS 391 (455)
Q Consensus 319 ~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN----~~~~Ld~all--RpGR~d-~~I~~~~p~~~~~~~L~~~~l~~~~ 391 (455)
+.-...-..+...++ + +..+|++.+. +.+.|-.++- +||.++ ..++|-+... .+..|+++.....+
T Consensus 68 pWL~~i~~~~~~~l~---~---~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~g 140 (191)
T KOG3354|consen 68 PWLKKIAVELRKALA---S---GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKG 140 (191)
T ss_pred HHHHHHHHHHHHHhh---c---CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhccc
Confidence 011111111222222 1 3345555443 2233333333 455555 5555555554 67788888888888
Q ss_pred CCchHHHHH-hhccccCchh--HHHh----ccCCHHHHHHHHHHHHH
Q 047029 392 HSMFDEIEE-LIKEVEVTPA--EEFM----KSEDADVALNGLVDFLL 431 (455)
Q Consensus 392 ~~l~~ei~~-ll~~~~~tpa--~~l~----~~~~~~~al~~l~~~l~ 431 (455)
|.+..++-+ -+...+.-.+ +.++ ....++..+..+++.+.
T Consensus 141 HFMp~~lleSQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 141 HFMPADLLESQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred ccCCHHHHHHHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 877655432 1222222122 2333 23567777776666554
No 361
>PRK09354 recA recombinase A; Provisional
Probab=97.20 E-value=0.0015 Score=66.48 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=45.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc---------------------CChHHHHHHH---Hh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL---------------------RSNSDLRRLL---VS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~---------------------~~~~~l~~ll---~~ 289 (455)
|++..+-+++|||||||||+|+..++... |...+.++...- .+..+...++ ..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777779999999999999998776443 555555544321 1111121222 22
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
.....+||||-+-++.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 24678999999998864
No 362
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.19 E-value=0.0027 Score=59.42 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.2
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+..-+.|.||+|+|||+|++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356799999999999999999999876
No 363
>PRK13764 ATPase; Provisional
Probab=97.19 E-value=0.0011 Score=71.90 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=40.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC---CcEEEEe------cc----cc---C-ChHHHHHHHHhhCCceEEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDME------LA----SL---R-SNSDLRRLLVSTGNRSILVIEDIDC 303 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~------~~----~~---~-~~~~l~~ll~~~~~~~IL~iDEiD~ 303 (455)
++|+|+.||||+||||+++|+++++. ..+..++ +. ++ . +...+.+.+. ..+|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lL-R~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILL-LVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHH-hhCCCEEEECCCCC
Confidence 56899999999999999999999884 3332332 11 11 0 1112222221 24699999999964
No 364
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.18 E-value=0.0013 Score=64.74 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=23.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.++++.||||+||||+.+++++.+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999999884
No 365
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.18 E-value=0.00097 Score=63.02 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred CceeEEECCCCCChHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~ 263 (455)
.+-++|.||.|+|||++++.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 366
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.18 E-value=0.00039 Score=71.64 Aligned_cols=97 Identities=23% Similarity=0.313 Sum_probs=61.5
Q ss_pred cceeEEEeeCcchhHHHHHhhhhHHHHHHHHHHhccceEEEeec--------------------CcccccccCC--CCCC
Q 047029 149 AHKSFHLSFSKLFKDKVLNKYLPYVAERSKAIKETKKVIKLYSL--------------------CAADAINLDH--PSTF 206 (455)
Q Consensus 149 ~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~--------------------~~w~~~~~~~--p~tf 206 (455)
++.+..|+=..-.+ .-++.+-..+.+.++... +..+.+-.. ..|.-....+ ..++
T Consensus 170 ~~k~v~l~d~pl~~-~ele~ia~eIi~~a~~~~--~sfIEi~r~GatVvQlrn~RIvIarPPfSd~~EITavRPvvk~~l 246 (604)
T COG1855 170 EWKLVRLSDKPLTR-EELEEIAREIIERAKRDP--DSFIEIDRPGATVVQLRNYRIVIARPPFSDRWEITAVRPVVKLSL 246 (604)
T ss_pred cEEEEEcCCccCCH-HHHHHHHHHHHHHHhhCc--CceEEEccCCceEEEeccEEEEEecCCCCCceEEEEEeeeEEech
Confidence 45566664333333 346677777777776532 222222111 2343211111 2368
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
++..+++.+++.|.+. .+|+|+.||||.||||+|+|+|.++.
T Consensus 247 edY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 247 EDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred hhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHH
Confidence 8888898888888664 35999999999999999999999983
No 367
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.17 E-value=0.0014 Score=61.53 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.8
Q ss_pred ceeEEECCCCCChHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMA 262 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA 262 (455)
+.++|.||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 368
>PRK06547 hypothetical protein; Provisional
Probab=97.17 E-value=0.00046 Score=63.46 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.+.-|++.||+|+|||++++.+|+.++..++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3567899999999999999999999988777554
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.16 E-value=0.0013 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.+...+.|.||+|+|||||++.+++.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 335568999999999999999999876
No 370
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.15 E-value=0.0044 Score=72.40 Aligned_cols=132 Identities=16% Similarity=0.195 Sum_probs=83.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh------------H--HH-H-HHHHhhCCceEEEEecccchh
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN------------S--DL-R-RLLVSTGNRSILVIEDIDCSI 305 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~------------~--~l-~-~ll~~~~~~~IL~iDEiD~l~ 305 (455)
-.+|+.||..+|||+++..+|...|..++.++-.+-... . .+ . -+.....++-.|++||+.-..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 359999999999999999999999999999876442111 1 01 1 122333567799999998532
Q ss_pred hhhhhcCCCCCCCCcchhhHhhhhhhhhccccc-------CCCceEEEEEcCCCC------CCCccccCCCceeEEEEeC
Q 047029 306 ELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS-------CGDERIIVFTTNYKE------RLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-------~~~~~ivI~TTN~~~------~Ld~allRpGR~d~~I~~~ 372 (455)
. .--..++.||.---.+.-. ..++..+++|-|+|. .|..|++. || ..++|.
T Consensus 969 T-------------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hFd 1032 (4600)
T COG5271 969 T-------------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHFD 1032 (4600)
T ss_pred H-------------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhcc
Confidence 1 1112233333211111100 113345666777763 47778887 98 678888
Q ss_pred CCCHHHHHHHHHHhhcc
Q 047029 373 YLTPGGFKILAFNYLKI 389 (455)
Q Consensus 373 ~p~~~~~~~L~~~~l~~ 389 (455)
.-..++..+|++..+.+
T Consensus 1033 dipedEle~ILh~rc~i 1049 (4600)
T COG5271 1033 DIPEDELEEILHGRCEI 1049 (4600)
T ss_pred cCcHHHHHHHHhccCcc
Confidence 87788888887766554
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.15 E-value=0.0015 Score=57.44 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
+..-++|.|+.|+|||++++++++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34568999999999999999999999753
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.14 E-value=0.0011 Score=67.22 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=47.5
Q ss_pred Cc-ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CCcEEEEec
Q 047029 206 FD-TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDMEL 274 (455)
Q Consensus 206 fd-~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~~ 274 (455)
|+ ++.|.++..+++++.+.....+ +-.-++-++|.||+|+|||++++.+.+.+ .+++|.+..
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g-------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~ 122 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG-------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKG 122 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc-------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecC
Confidence 55 8899999999998877643332 22336789999999999999999999988 456666543
No 373
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.14 E-value=0.0014 Score=62.49 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEecc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELA 275 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~ 275 (455)
|++....+|+.||||||||+++..++... |..++.+...
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e 57 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE 57 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence 77778889999999999999998776433 6777766653
No 374
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.14 E-value=0.00044 Score=63.59 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.-+++.||||+||||+++.+|..+|+..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3688999999999999999999998765543
No 375
>PRK14528 adenylate kinase; Provisional
Probab=97.13 E-value=0.00044 Score=64.26 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=26.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.+++.||||+|||++++.+|..++++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999999999877654
No 376
>PRK02496 adk adenylate kinase; Provisional
Probab=97.12 E-value=0.0004 Score=64.08 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=26.2
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+++.||||+|||++++.+|..+++..+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999999877654
No 377
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.12 E-value=0.0028 Score=63.52 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEE----EeccccCChHHHHHHH
Q 047029 212 DPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYD----MELASLRSNSDLRRLL 287 (455)
Q Consensus 212 ~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~----l~~~~~~~~~~l~~ll 287 (455)
++++++-+.+.+-..+.. .....+-++|+|+.|+|||+++..+...+|-.... +.+.++.+.. .-+
T Consensus 54 d~~~~~~l~~~lg~~L~~-------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~~~~---f~~ 123 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTG-------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQEHR---FGL 123 (304)
T ss_pred CHHHHHHHHHHHhHHhcC-------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhccCCC---chh
Confidence 444555555554433322 13446789999999999999999999988754321 1122221101 112
Q ss_pred HhhCCceEEEEecccc
Q 047029 288 VSTGNRSILVIEDIDC 303 (455)
Q Consensus 288 ~~~~~~~IL~iDEiD~ 303 (455)
.....+.++++||++.
T Consensus 124 a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 124 ARLEGKRAVIGDEVQK 139 (304)
T ss_pred hhhcCCEEEEecCCCC
Confidence 3344577899999874
No 378
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.12 E-value=0.0017 Score=68.21 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=56.7
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCce-eEEECCCCCChHHHHHHHHHHcCCc---EEEEe-----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLKFD---IYDME----- 273 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGTGKTsla~alA~~l~~~---v~~l~----- 273 (455)
.-+|+.+.+.+...+.+.+.+.. |.| +|+.||.|+||||..-++.++++.+ ++.++
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 34688999988888877776642 556 6777999999999999999999543 33221
Q ss_pred -cccc-----------CChHHHHHHHHhhCCceEEEEecccc
Q 047029 274 -LASL-----------RSNSDLRRLLVSTGNRSILVIEDIDC 303 (455)
Q Consensus 274 -~~~~-----------~~~~~l~~ll~~~~~~~IL~iDEiD~ 303 (455)
...+ .-..-++.++. ..|.||.+.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LR--qDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILR--QDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhc--cCCCeEEEeccCC
Confidence 1111 01133333333 3699999999964
No 379
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00045 Score=62.18 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+-+.|||||||||+++-+|+.+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999874
No 380
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.10 E-value=0.0026 Score=65.75 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.-+++.||||||||++++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3499999999999999999999864
No 381
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.10 E-value=0.00096 Score=75.11 Aligned_cols=98 Identities=16% Similarity=0.335 Sum_probs=54.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CC----------cEEEEeccccCC--------------hHHHHHHHHhhC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KF----------DIYDMELASLRS--------------NSDLRRLLVSTG 291 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~----------~v~~l~~~~~~~--------------~~~l~~ll~~~~ 291 (455)
.+.++|+||.+.|||++.+.++-.. |+ ++++--...+.. -..+..++....
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~ 406 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKAD 406 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCC
Confidence 4578999999999999999987542 32 222111111111 122334445556
Q ss_pred CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC
Q 047029 292 NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL 355 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L 355 (455)
.++++++||+..-.+ ..........++..+-. .+..+|+||++.+..
T Consensus 407 ~~sLvLlDE~~~GtD-----------p~eg~ala~aile~l~~------~~~~vIitTH~~el~ 453 (782)
T PRK00409 407 KNSLVLFDELGAGTD-----------PDEGAALAISILEYLRK------RGAKIIATTHYKELK 453 (782)
T ss_pred cCcEEEecCCCCCCC-----------HHHHHHHHHHHHHHHHH------CCCEEEEECChHHHH
Confidence 899999999985321 11111222334444321 235788899876543
No 382
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.09 E-value=0.00043 Score=63.51 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=27.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.+-++|.||||+||||++++++..++..++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 35689999999999999999999987665544
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.08 E-value=0.0037 Score=60.31 Aligned_cols=49 Identities=27% Similarity=0.205 Sum_probs=36.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRRLL 287 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~ll 287 (455)
|++....+|++||||||||+++..++.+. |.+.+.+.... +..++.+-+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 78888889999999999999998766542 66777776543 444554444
No 384
>PF13245 AAA_19: Part of AAA domain
Probab=97.05 E-value=0.00093 Score=52.93 Aligned_cols=23 Identities=48% Similarity=0.885 Sum_probs=17.0
Q ss_pred eeEEECCCCCChH-HHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKS-SLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKT-sla~alA~~l 265 (455)
-+++.|||||||| ++++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566999999999 5555555555
No 385
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.04 E-value=0.002 Score=61.40 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=38.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH-----cCCcE---------EEEecccc------C-Ch-------HHHHHHHHhhCCc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY-----LKFDI---------YDMELASL------R-SN-------SDLRRLLVSTGNR 293 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~-----l~~~v---------~~l~~~~~------~-~~-------~~l~~ll~~~~~~ 293 (455)
+-++|.||.|+|||++.+.+|.. .+..+ +.--...+ . .. ..+..++....++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 56899999999999999999742 22211 11001111 0 11 1345566666789
Q ss_pred eEEEEeccc
Q 047029 294 SILVIEDID 302 (455)
Q Consensus 294 ~IL~iDEiD 302 (455)
+++++||..
T Consensus 111 ~llllDEp~ 119 (216)
T cd03284 111 SLVLLDEIG 119 (216)
T ss_pred eEEEEecCC
Confidence 999999984
No 386
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.04 E-value=0.00055 Score=65.89 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=27.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.++|.||||+||||+++.+|+.+|+..+.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999998776553
No 387
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.04 E-value=0.0061 Score=61.13 Aligned_cols=30 Identities=37% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
..+..+-|+||=|+|||++++.+-+.+.-.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 457789999999999999999998888443
No 388
>PLN02200 adenylate kinase family protein
Probab=97.03 E-value=0.00069 Score=65.40 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=26.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
+.-+++.||||+||||+++.+|+.+|+..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~hi 72 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHL 72 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 456899999999999999999999987643
No 389
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.03 E-value=0.0022 Score=62.89 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=52.5
Q ss_pred CceeEEECCCCCChHHHHHHHHH------HcCCcEEEEeccccCChHHHHHHHHhh-----------------CCceEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN------YLKFDIYDMELASLRSNSDLRRLLVST-----------------GNRSILV 297 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~------~l~~~v~~l~~~~~~~~~~l~~ll~~~-----------------~~~~IL~ 297 (455)
...+||.||.|.|||.|++.+-. .+.-.++.++|..+.++..+..+|... .....||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 55799999999999999998853 457789999999998887777777433 2357999
Q ss_pred Eecccchh
Q 047029 298 IEDIDCSI 305 (455)
Q Consensus 298 iDEiD~l~ 305 (455)
+|||..+.
T Consensus 288 ldeigelg 295 (531)
T COG4650 288 LDEIGELG 295 (531)
T ss_pred hHhhhhcC
Confidence 99998763
No 390
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.02 E-value=0.0026 Score=61.99 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=24.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..-+++.||+|||||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 446999999999999999999998854
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.02 E-value=0.003 Score=57.73 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|+|||+|++++++.+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4458999999999999999999976
No 392
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.01 E-value=0.0006 Score=64.46 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.1
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+++.||||+||||+++.+|..+|+..+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999999877653
No 393
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.003 Score=58.42 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.--+.+.||.|+|||||.+.+|..+
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3458889999999999999999987
No 394
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.01 E-value=0.0019 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
-++|.||+|+|||++++.|++....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999997644
No 395
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0088 Score=67.31 Aligned_cols=121 Identities=21% Similarity=0.316 Sum_probs=76.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEeccccCC--------hHHHHHHHHh---hCCceEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMELASLRS--------NSDLRRLLVS---TGNRSILVIE 299 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~~~~~~--------~~~l~~ll~~---~~~~~IL~iD 299 (455)
+++-+|.|.||+|||.++.-+|+.. +..++.+++..+.. +..+..++.. ...+.|||||
T Consensus 208 k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfig 287 (898)
T KOG1051|consen 208 KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLG 287 (898)
T ss_pred CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 5788999999999999999999987 34556666654421 3455556554 3467899999
Q ss_pred cccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE-EcCCC----CCCCccccCCCceeEEEEeCCC
Q 047029 300 DIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF-TTNYK----ERLDPALLRPGRMDMHIHMSYL 374 (455)
Q Consensus 300 EiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~-TTN~~----~~Ld~allRpGR~d~~I~~~~p 374 (455)
|++.+...... ........+|..+-+. ++.-+|+ |||.. -.=||++-| ||+. +.++.|
T Consensus 288 elh~lvg~g~~---------~~~~d~~nlLkp~L~r-----g~l~~IGatT~e~Y~k~iekdPalEr--rw~l-~~v~~p 350 (898)
T KOG1051|consen 288 ELHWLVGSGSN---------YGAIDAANLLKPLLAR-----GGLWCIGATTLETYRKCIEKDPALER--RWQL-VLVPIP 350 (898)
T ss_pred ceeeeecCCCc---------chHHHHHHhhHHHHhc-----CCeEEEecccHHHHHHHHhhCcchhh--Ccce-eEeccC
Confidence 99998752111 1122223333333221 2355565 55421 124899999 9975 667888
Q ss_pred CHHH
Q 047029 375 TPGG 378 (455)
Q Consensus 375 ~~~~ 378 (455)
+.+.
T Consensus 351 S~~~ 354 (898)
T KOG1051|consen 351 SVEN 354 (898)
T ss_pred cccc
Confidence 7655
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.00 E-value=0.002 Score=59.75 Aligned_cols=61 Identities=13% Similarity=0.310 Sum_probs=38.3
Q ss_pred eEEECCCCCChHHHHHHHHH-H----cCCcE---------E-----EEeccc-cC--------ChHHHHHHHHhhCCceE
Q 047029 244 YLLYGPPGTGKSSLIAAMAN-Y----LKFDI---------Y-----DMELAS-LR--------SNSDLRRLLVSTGNRSI 295 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~-~----l~~~v---------~-----~l~~~~-~~--------~~~~l~~ll~~~~~~~I 295 (455)
++|+||.|+|||++++.++- . .|..+ + .+...+ +. .-..+..++.....|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999983 2 23221 1 111111 10 11234445555568999
Q ss_pred EEEecccch
Q 047029 296 LVIEDIDCS 304 (455)
Q Consensus 296 L~iDEiD~l 304 (455)
+++||...-
T Consensus 82 lllDEp~~g 90 (185)
T smart00534 82 VLLDELGRG 90 (185)
T ss_pred EEEecCCCC
Confidence 999999754
No 397
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.00 E-value=0.0032 Score=63.52 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=30.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~ 276 (455)
|++...-++++||||||||+++..+|-.. +..+++++...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 67777789999999999999999998653 23566665543
No 398
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.98 E-value=0.0012 Score=51.12 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=23.3
Q ss_pred eEEECCCCCChHHHHHHHHHHc-CCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL-KFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l-~~~v~~l 272 (455)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 5788999999999999999997 3344433
No 399
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.98 E-value=0.00068 Score=64.35 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.4
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
++++||||+|||++++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999999877654
No 400
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.97 E-value=0.00054 Score=58.51 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEEECCCCCChHHHHHHHHHHc
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l 265 (455)
|+|.|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 401
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.96 E-value=0.0021 Score=64.92 Aligned_cols=62 Identities=21% Similarity=0.347 Sum_probs=41.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc-cc------------CChHHHHHHHHhh--CCceEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA-SL------------RSNSDLRRLLVST--GNRSILVIED 300 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~-~~------------~~~~~l~~ll~~~--~~~~IL~iDE 300 (455)
+.++|+.||+|+||||+++|++.++ +..++.++-. ++ ...-.+.+++... .+|..|++-|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 5689999999999999999999986 2334443311 11 1112344444333 3689999999
Q ss_pred cc
Q 047029 301 ID 302 (455)
Q Consensus 301 iD 302 (455)
+-
T Consensus 224 iR 225 (323)
T PRK13833 224 VR 225 (323)
T ss_pred cC
Confidence 85
No 402
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.94 E-value=0.0035 Score=66.33 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=45.8
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc--------------------CChHHHHHHHHh--hC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL--------------------RSNSDLRRLLVS--TG 291 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~--------------------~~~~~l~~ll~~--~~ 291 (455)
|+++..-+||+|+||+|||+|+..+|..+ +.++++++..+- .....+..+... ..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 67777789999999999999999998765 346666654321 001112222221 23
Q ss_pred CceEEEEecccchh
Q 047029 292 NRSILVIEDIDCSI 305 (455)
Q Consensus 292 ~~~IL~iDEiD~l~ 305 (455)
++.+++||.|..+.
T Consensus 170 ~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 170 NPQACVIDSIQTLY 183 (454)
T ss_pred CCcEEEEecchhhc
Confidence 67899999998764
No 403
>PRK14527 adenylate kinase; Provisional
Probab=96.93 E-value=0.00071 Score=62.94 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=26.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+.-+++.||||+||||+++.+|+.++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876543
No 404
>PRK04328 hypothetical protein; Provisional
Probab=96.93 E-value=0.0062 Score=59.32 Aligned_cols=50 Identities=28% Similarity=0.240 Sum_probs=35.9
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH-c--CCcEEEEeccccCChHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY-L--KFDIYDMELASLRSNSDLRRLLV 288 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~-l--~~~v~~l~~~~~~~~~~l~~ll~ 288 (455)
|++....+|++||||||||+|+..++.. + |.+.+.+.... +...+.+.+.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i~~~~~ 71 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQVRRNMR 71 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHHHHHHH
Confidence 6777888999999999999998876654 2 66777776554 4444554443
No 405
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.00061 Score=62.03 Aligned_cols=29 Identities=21% Similarity=0.498 Sum_probs=26.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.+++.|.|||||||+++.++ .+|+.++.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 47899999999999999999 999888754
No 406
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.92 E-value=0.0035 Score=59.86 Aligned_cols=102 Identities=17% Similarity=0.295 Sum_probs=58.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CC---------cEEE-----Eecc-ccC-C-------hHHHHHHHHhhCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KF---------DIYD-----MELA-SLR-S-------NSDLRRLLVSTGN 292 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~---------~v~~-----l~~~-~~~-~-------~~~l~~ll~~~~~ 292 (455)
.+.++|+||.|.|||++.+.++... |. ++++ +... ++. + -.++..++.....
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999987643 21 1111 1111 111 1 1445566777788
Q ss_pred ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCcc
Q 047029 293 RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPA 358 (455)
Q Consensus 293 ~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~a 358 (455)
+++++|||+..-.. ..+.......++..+... .+..+|++|+..+.....
T Consensus 110 ~sLvLlDE~~~Gt~-----------~~dg~~la~ail~~L~~~-----~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 110 DSLVILDELGRGTS-----------THDGYAIAHAVLEYLVKK-----VKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CeEEEEecccCCCC-----------chHHHHHHHHHHHHHHHh-----cCCcEEEEeccHHHHHHh
Confidence 99999999875211 111122222334443321 235678888876554433
No 407
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.92 E-value=0.0031 Score=67.30 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=54.9
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCce-eEEECCCCCChHHHHHHHHHHcC---CcEEEEec----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLK---FDIYDMEL---- 274 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~---- 274 (455)
+.+++++.+.++..+.+.+.+. . ++| +|+.||+|+||||++.++.++++ .+++.++-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~----~-----------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR----R-----------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh----c-----------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 4578888888877766655443 1 456 68999999999999999888774 33444421
Q ss_pred --ccc-----CC--hHHHHHHHHhh--CCceEEEEecccc
Q 047029 275 --ASL-----RS--NSDLRRLLVST--GNRSILVIEDIDC 303 (455)
Q Consensus 275 --~~~-----~~--~~~l~~ll~~~--~~~~IL~iDEiD~ 303 (455)
..+ .. ...+...+... ..|.||++.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111 11 11223333222 4799999999964
No 408
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.0022 Score=60.25 Aligned_cols=24 Identities=46% Similarity=0.801 Sum_probs=21.7
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-+++.||+|+||||+++++++++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998884
No 409
>PRK04182 cytidylate kinase; Provisional
Probab=96.92 E-value=0.00084 Score=61.15 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=26.7
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.+.|.|+||||||++++++|+.+|+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999998875
No 410
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=96.92 E-value=0.038 Score=51.12 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=88.5
Q ss_pred cEEEEecCCCCCccHHHHHHHHHhhccCCc-ccccccccccC----------------------CCCceEEEccCCCEEE
Q 047029 59 LTLIIEQSEGFSVNEIYQAAELYLSTRITP-SIQQLRVSQAP----------------------REKSLSVTINEGQKVV 115 (455)
Q Consensus 59 ~~~~i~e~~~~~~n~~~~a~~~yl~~~~~~-~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~ 115 (455)
.++.|++ .+++|+.+-.+|+..... ..+++.+.... +.+.+.+.+..| ...
T Consensus 27 ~sv~I~~-----~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~G-~h~ 100 (187)
T PF08740_consen 27 SSVEIPS-----DDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFTPSPG-THW 100 (187)
T ss_pred EEEEECC-----CCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEEeCCC-CEE
Confidence 4666665 457899999999877544 34555554421 356789999999 566
Q ss_pred EeeCCeEEEEEEEEeecCCCCCCCCCCcccccccceeEEEeeCcchhHHHHHhhhhHHHHHHHHHHhccceEEEeec--C
Q 047029 116 DTFEGMQLTWELVTTENQKTSLDYDSGLYASETAHKSFHLSFSKLFKDKVLNKYLPYVAERSKAIKETKKVIKLYSL--C 193 (455)
Q Consensus 116 d~f~g~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vl~~yl~~v~~~~~~~~~~~~~~~~~~~--~ 193 (455)
..|+| .|..+.+..+........ ..+.+.++|++-...++ +|.++|.+..+... +..+....+|.. .
T Consensus 101 F~y~G---~~~~~~R~~~~~~~~~~~-----~~~~e~l~l~~lg~s~~-~l~~ll~ear~~~~--~~~~~~t~Iy~~~~~ 169 (187)
T PF08740_consen 101 FWYKG---RWFWFSRQRESNSYNSWT-----GAPDETLTLSCLGRSPK-PLKDLLEEAREYYL--KKQKGKTTIYRADGS 169 (187)
T ss_pred EEECC---EEEEEEEEeccccccccC-----CCCceEEEEEEecCCHH-HHHHHHHHHHHHHH--HhcCCcEEEEeCCCC
Confidence 67999 788888776443322111 13477899999888764 56666555444442 344444668877 2
Q ss_pred c--ccccccCCCCCCccc
Q 047029 194 A--ADAINLDHPSTFDTL 209 (455)
Q Consensus 194 ~--w~~~~~~~p~tfd~l 209 (455)
. |..+.-.++.++++|
T Consensus 170 ~~~W~~~~~r~~RplsTV 187 (187)
T PF08740_consen 170 EYRWRRVASRPKRPLSTV 187 (187)
T ss_pred CCCCcCCCCcCCCCCCCC
Confidence 3 988777777888875
No 411
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.91 E-value=0.016 Score=58.26 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=52.0
Q ss_pred CceEEEEecccchhhhhhhcCCCCCC-CCcchhhHhhhhhhhhcccccCCCceEE-EEEcC---CCC--CCCccccCC-C
Q 047029 292 NRSILVIEDIDCSIELENRQCGGGYD-ENNSQVTLSGLLNFVDGLWSSCGDERII-VFTTN---YKE--RLDPALLRP-G 363 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~~~~~~~~~~~~-~~~~~~~ls~LL~~ldg~~~~~~~~~iv-I~TTN---~~~--~Ld~allRp-G 363 (455)
-|.++.||++.+++....-....... ....-.....|++.+.|-.+-..+.+++ +.+|. .+. .++.++... +
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 36799999999997632212111111 1111223344555544433322222321 44443 222 456566531 1
Q ss_pred c-----ee-------------EEEEeCCCCHHHHHHHHHHhhccc
Q 047029 364 R-----MD-------------MHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 364 R-----~d-------------~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+ |. ..|+++..+.++.+.++..|....
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~ 280 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSG 280 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCC
Confidence 1 10 168899999999999999887643
No 412
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.0035 Score=57.24 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
++..-+.|.||+|+|||+|++++++.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345569999999999999999999987
No 413
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0047 Score=65.93 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=44.7
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecccc----------------------CChHHHHHHHHhhCC
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASL----------------------RSNSDLRRLLVSTGN 292 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~----------------------~~~~~l~~ll~~~~~ 292 (455)
+...+.|.||+|+||||++..||..+ +..+..++.... .....+...+.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35678999999999999999999764 233433332110 123456666766677
Q ss_pred ceEEEEecccch
Q 047029 293 RSILVIEDIDCS 304 (455)
Q Consensus 293 ~~IL~iDEiD~l 304 (455)
..+|+||.....
T Consensus 429 ~DLVLIDTaG~s 440 (559)
T PRK12727 429 YKLVLIDTAGMG 440 (559)
T ss_pred CCEEEecCCCcc
Confidence 889999998753
No 414
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.90 E-value=0.0034 Score=70.56 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=21.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
+.++|.||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 67999999999999999999876
No 415
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.90 E-value=0.0064 Score=68.05 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=40.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---C--CcEEEEecccc----------CChHHHHHHHHhh------------CCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---K--FDIYDMELASL----------RSNSDLRRLLVST------------GNR 293 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~--~~v~~l~~~~~----------~~~~~l~~ll~~~------------~~~ 293 (455)
.+-++|.|+||||||++++++...+ + ..++-+..+.- .....+.++|... ...
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~ 417 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDC 417 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccC
Confidence 3478999999999999999997766 3 44544433221 0123344444211 134
Q ss_pred eEEEEecccch
Q 047029 294 SILVIEDIDCS 304 (455)
Q Consensus 294 ~IL~iDEiD~l 304 (455)
.+|++||+..+
T Consensus 418 ~llIvDEaSMv 428 (720)
T TIGR01448 418 DLLIVDESSMM 428 (720)
T ss_pred CEEEEeccccC
Confidence 79999999865
No 416
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.89 E-value=0.0097 Score=53.98 Aligned_cols=107 Identities=11% Similarity=0.231 Sum_probs=62.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc-----------------------------CC-hH---HHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL-----------------------------RS-NS---DLRRL 286 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~-----------------------------~~-~~---~l~~l 286 (455)
-+.+|+++|+|||++|-++|-.. |..+..+..-.- .. .. ..++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 36789999999999999998765 555554322110 00 01 11111
Q ss_pred HH------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCcccc
Q 047029 287 LV------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALL 360 (455)
Q Consensus 287 l~------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~all 360 (455)
+. ......+|+||||-.... ..-.....++..++.. +++.=+|+|... .++.|+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~-------------~gli~~~~v~~ll~~r----p~~~evIlTGr~---~p~~l~ 143 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALG-------------YGLLDVEEVVDLLKAK----PEDLELVLTGRN---APKELI 143 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhh-------------CCCCCHHHHHHHHHcC----CCCCEEEEECCC---CCHHHH
Confidence 21 123568999999987754 1123345566666543 345668888876 355666
Q ss_pred CCCceeEEEEe
Q 047029 361 RPGRMDMHIHM 371 (455)
Q Consensus 361 RpGR~d~~I~~ 371 (455)
- +.|.+=+|
T Consensus 144 e--~AD~VTEm 152 (159)
T cd00561 144 E--AADLVTEM 152 (159)
T ss_pred H--hCceeeec
Confidence 5 55655444
No 417
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.014 Score=60.79 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=26.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----CCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~ 275 (455)
+.-++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 3458899999999999999999754 4445444443
No 418
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0015 Score=61.10 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-++|.|+||+|||++++-+|+.|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999993
No 419
>PLN02199 shikimate kinase
Probab=96.87 E-value=0.0019 Score=64.06 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=31.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.++++|.|++|+|||++++.+|+.+|+++++.|.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 5689999999999999999999999999998763
No 420
>PRK01184 hypothetical protein; Provisional
Probab=96.86 E-value=0.00099 Score=61.40 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
-++|.||||+||||+++ +++.+|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999887 889999887654
No 421
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.86 E-value=0.0043 Score=58.25 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
|+-++|.||+|+||||.+.-+|.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999999887
No 422
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.85 E-value=0.0055 Score=56.21 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+....+.|.||+|+|||||++++++.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 335569999999999999999999976
No 423
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.85 E-value=0.0011 Score=60.01 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=26.5
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.++|++|+|||++++.+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 68999999999999999999999887654
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0012 Score=61.17 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.+++.||||+||||+|+.||+.++++-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4789999999999999999999655443
No 425
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.84 E-value=0.0039 Score=62.96 Aligned_cols=62 Identities=21% Similarity=0.415 Sum_probs=40.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc-cc------------CChHHHHHHHHhh--CCceEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA-SL------------RSNSDLRRLLVST--GNRSILVIED 300 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~-~~------------~~~~~l~~ll~~~--~~~~IL~iDE 300 (455)
++++++.||+|+||||++++++.++ ...++.++-. ++ ...-.+.+++... .+|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5789999999999999999999874 1223322110 11 1122344554433 3689999999
Q ss_pred cc
Q 047029 301 ID 302 (455)
Q Consensus 301 iD 302 (455)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 86
No 426
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.84 E-value=0.00074 Score=60.26 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.9
Q ss_pred EECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 246 LYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 246 L~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
|.||||+|||++++.||..+|+..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999999876543
No 427
>PRK06696 uridine kinase; Validated
Probab=96.83 E-value=0.0042 Score=59.32 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=31.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
+.-|.+.|+||+||||+|+.|+..+ |..++.+.+.++..
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 5578899999999999999999999 66777666665543
No 428
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.83 E-value=0.0044 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCceeEEECCCCCChHHHHHHHHH
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
+..-+.|.||.|+|||||.++++.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 345589999999999999999964
No 429
>PTZ00202 tuzin; Provisional
Probab=96.82 E-value=0.011 Score=61.66 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=51.0
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHH
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSD 282 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~ 282 (455)
|..-.+++|-+....++...+.. .....++-+.|.||+|||||++++.++..++...+.++.. ....-
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~----------~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr--g~eEl 325 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRR----------LDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR--GTEDT 325 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhc----------cCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC--CHHHH
Confidence 44456677776666666555431 2233356789999999999999999999999887777776 23344
Q ss_pred HHHHHHh
Q 047029 283 LRRLLVS 289 (455)
Q Consensus 283 l~~ll~~ 289 (455)
++.++..
T Consensus 326 Lr~LL~A 332 (550)
T PTZ00202 326 LRSVVKA 332 (550)
T ss_pred HHHHHHH
Confidence 4444443
No 430
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.82 E-value=0.005 Score=62.74 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.9
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMA 262 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA 262 (455)
|++...-+.|+||||||||.|+..+|
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqla 147 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLC 147 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHH
Confidence 66767778999999999999999886
No 431
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.82 E-value=0.00081 Score=60.78 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=20.9
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
|.|.|+||||||||+++|+.. |++++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 689999999999999999999 77765
No 432
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.82 E-value=0.0041 Score=60.79 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=38.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRRLLV 288 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~ll~ 288 (455)
|++..+.+|++|+||||||+++..++... |.+++.+.... +...+.+.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC--CHHHHHHHHH
Confidence 67778889999999999999999888765 67787777654 4455555553
No 433
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.81 E-value=0.0045 Score=63.77 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=39.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc-c----------------cC-ChHHHHHHHHhh--CCceEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA-S----------------LR-SNSDLRRLLVST--GNRSIL 296 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~-~----------------~~-~~~~l~~ll~~~--~~~~IL 296 (455)
..+|+.||+|+||||+++++.+++. .+++.++-. + +. ....+...+... ..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3689999999999999999998872 345554311 0 00 011233333322 379999
Q ss_pred EEecccc
Q 047029 297 VIEDIDC 303 (455)
Q Consensus 297 ~iDEiD~ 303 (455)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999963
No 434
>PTZ00035 Rad51 protein; Provisional
Probab=96.80 E-value=0.0057 Score=62.27 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
|++...-+.++||||||||+++..+|.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 667677799999999999999998874
No 435
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.79 E-value=0.0039 Score=58.78 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHhhh--cCCCCceeEEECCCCCChHHHHHHHHHH
Q 047029 232 FYSRV--GKAWKRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 232 ~~~~~--g~~~~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+++ |+|.+.=+++.|+.|||||.|.+.+|--
T Consensus 17 lDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG 51 (235)
T COG2874 17 LDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYG 51 (235)
T ss_pred HHhhccCCCccCeEEEEECCCCccHHHHHHHHHHH
Confidence 33445 4666777999999999999999999853
No 436
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.78 E-value=0.0013 Score=65.55 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-CCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l 272 (455)
+.-+++.|||||||||+++.+++.+ +..+++.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 3468999999999999999999999 6555543
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.77 E-value=0.0013 Score=61.94 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHH---HHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDL---RRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDEN 319 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l---~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~ 319 (455)
-++++||+|||||.++-++|+.+|.+++..|--....+-.+ +..-.+...-.=+++||-.-.- +.-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~-----------G~i 71 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSD-----------GII 71 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG------------S-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccC-----------CCc
Confidence 47999999999999999999999999999886554211000 1111111111126777543211 112
Q ss_pred cchhhHhhhhhhhhcccccCCCceEEEEEcCCC--CCCCcccc-CCCceeEEEEeCCCCHHHHHHHHH----Hhhcc--c
Q 047029 320 NSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK--ERLDPALL-RPGRMDMHIHMSYLTPGGFKILAF----NYLKI--K 390 (455)
Q Consensus 320 ~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~--~~Ld~all-RpGR~d~~I~~~~p~~~~~~~L~~----~~l~~--~ 390 (455)
........|+..++.... .+.+|+=+-+... ...-.... -+.+. ..+.++.|+.+.+..-++ .+|.. .
T Consensus 72 ~a~ea~~~Li~~v~~~~~--~~~~IlEGGSISLl~~m~~~~~w~~~f~w-~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~ 148 (233)
T PF01745_consen 72 NAEEAHERLISEVNSYSA--HGGLILEGGSISLLNCMAQDPYWSLDFRW-HIRRLRLPDEEVFMARAKRRVRQMLRPDSS 148 (233)
T ss_dssp -HHHHHHHHHHHHHTTTT--SSEEEEEE--HHHHHHHHH-TTTSSSSEE-EEEE-----HHHHHHHHHHHHHHHHS--SS
T ss_pred CHHHHHHHHHHHHHhccc--cCceEEeCchHHHHHHHHhcccccCCCeE-EEEEEECCChHHHHHHHHHHHHHhcCCCCC
Confidence 233455667777777654 2223332332210 00001111 22222 234567888887654433 33332 2
Q ss_pred CCCchHHHHHhhcccc
Q 047029 391 SHSMFDEIEELIKEVE 406 (455)
Q Consensus 391 ~~~l~~ei~~ll~~~~ 406 (455)
...+.+|+.++-..-.
T Consensus 149 ~~Sll~EL~~lW~~p~ 164 (233)
T PF01745_consen 149 GPSLLEELVALWNDPA 164 (233)
T ss_dssp S--HHHHHHHHHTSTT
T ss_pred CCcHHHHHHHHHhCcc
Confidence 3345667776665433
No 438
>PRK14526 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=62.54 Aligned_cols=29 Identities=28% Similarity=0.630 Sum_probs=25.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.++|.||||+||||+++.+|+.+++..+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 37899999999999999999999876654
No 439
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.77 E-value=0.0074 Score=58.33 Aligned_cols=97 Identities=15% Similarity=0.310 Sum_probs=54.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc-----CCc---------EE-----EEecc-ccC-C-------hHHHHHHHHhhCCc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL-----KFD---------IY-----DMELA-SLR-S-------NSDLRRLLVSTGNR 293 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l-----~~~---------v~-----~l~~~-~~~-~-------~~~l~~ll~~~~~~ 293 (455)
+.++|+||..+|||++++.+|-.. |.. ++ .+... ++. + -.++..++....++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~ 123 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEK 123 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TT
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccc
Confidence 679999999999999999998654 321 11 11111 111 1 14566677777789
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
++++|||+..--. ..+.......+++.+... .+..+++||+..+.
T Consensus 124 sLvliDE~g~gT~-----------~~eg~ai~~aile~l~~~-----~~~~~i~~TH~~~l 168 (235)
T PF00488_consen 124 SLVLIDELGRGTN-----------PEEGIAIAIAILEYLLEK-----SGCFVIIATHFHEL 168 (235)
T ss_dssp EEEEEESTTTTSS-----------HHHHHHHHHHHHHHHHHT-----TT-EEEEEES-GGG
T ss_pred eeeecccccCCCC-----------hhHHHHHHHHHHHHHHHh-----ccccEEEEeccchh
Confidence 9999999975211 112222333445544421 12467889987754
No 440
>PRK10436 hypothetical protein; Provisional
Probab=96.76 E-value=0.0057 Score=64.80 Aligned_cols=85 Identities=22% Similarity=0.429 Sum_probs=54.8
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCce-eEEECCCCCChHHHHHHHHHHcC---CcEEEEec-----
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLK---FDIYDMEL----- 274 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~----- 274 (455)
.+++++.+.+...+.+.+.+. . +.| +|+.||+|+||||++.++.++++ .+++.++-
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~----~-----------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~ 259 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ----Q-----------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP 259 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH----h-----------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc
Confidence 478899888877766655443 1 344 78899999999999988888773 33444321
Q ss_pred -cc-----cC--ChHHHHHHHHhh--CCceEEEEecccc
Q 047029 275 -AS-----LR--SNSDLRRLLVST--GNRSILVIEDIDC 303 (455)
Q Consensus 275 -~~-----~~--~~~~l~~ll~~~--~~~~IL~iDEiD~ 303 (455)
.. +. ....+...+... ..|.||++.||-.
T Consensus 260 l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 260 LAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred CCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 11 11 112344444333 3699999999963
No 441
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.75 E-value=0.0027 Score=62.63 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=34.9
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc----------CChHHHHHHHH-----hhCCceEEEEecccchh
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL----------RSNSDLRRLLV-----STGNRSILVIEDIDCSI 305 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~----------~~~~~l~~ll~-----~~~~~~IL~iDEiD~l~ 305 (455)
++|+|.||+|||++++.|+..+ +..+..++-..+ ..+...+..+. ......|+++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 7899999999999999999986 566666553322 12233443332 22456899999988653
No 442
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.74 E-value=0.0072 Score=64.59 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=38.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH----cCCcEEEEeccccCChHHHHHHHHh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LKFDIYDMELASLRSNSDLRRLLVS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~----l~~~v~~l~~~~~~~~~~l~~ll~~ 289 (455)
|++..+.+|+.||||||||+++..++.. .|.+.+++.+. ++..++.+....
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~~~~~~ 71 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDIIKNARS 71 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHHHHHHH
Confidence 7888889999999999999999988543 26787777765 355555555433
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.72 E-value=0.0034 Score=57.95 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=25.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
+|-++|.||+|+|||+|++.|.....-.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 56799999999999999999999986544
No 444
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.72 E-value=0.0019 Score=57.85 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.6
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+++.|+||+|||++++.++..+ +...+.++
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 6899999999999999999998 66665554
No 445
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.72 E-value=0.0015 Score=60.55 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=25.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
..+.|.||+|+||||+++.|+..++.+++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999998766544
No 446
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0057 Score=55.91 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|+|||+|++.+|+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999976
No 447
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0062 Score=60.17 Aligned_cols=52 Identities=35% Similarity=0.695 Sum_probs=37.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCce-eEEECCCCCChHHHHHHHHHHcC----CcEEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLK----FDIYDM 272 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGTGKTsla~alA~~l~----~~v~~l 272 (455)
...+|+.+..++-+.+ +.+ .++| +|..||.|+||||..+||-+++| .+++.+
T Consensus 104 ~i~~~e~LglP~i~~~-~~~------------------~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI 160 (353)
T COG2805 104 KIPTLEELGLPPIVRE-LAE------------------SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI 160 (353)
T ss_pred cCCCHHHcCCCHHHHH-HHh------------------CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe
Confidence 3457888888765544 211 1566 67889999999999999999995 345544
No 448
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.66 E-value=0.0097 Score=58.24 Aligned_cols=115 Identities=21% Similarity=0.223 Sum_probs=64.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccccCChHHHHH----------------------
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELASLRSNSDLRR---------------------- 285 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~~~~~~~l~~---------------------- 285 (455)
|++...-+=|+||||||||.|+-.+|-.. +..++++|...--+...+.+
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 55555557799999999999998887543 34577777654322222222
Q ss_pred -------HHHh------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 286 -------LLVS------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 286 -------ll~~------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
++.. ..+-.+|+||-|-.++...- .+. .+.......+..+++.+-.+... .++.||.|..-.
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~--~~~-~~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvTNqv~ 188 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEF--SGR-GDLAERQRMLARLARILKRLARK--YNIAVVVTNQVT 188 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHS--GST-TTHHHHHHHHHHHHHHHHHHHHH--TT-EEEEEEEEC
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHH--ccc-hhhHHHHHHHHHHHHHHHHHHHh--CCceEEeeceee
Confidence 2211 12457999999999875221 110 11123345666777777766554 334555443333
Q ss_pred CCCC
Q 047029 353 ERLD 356 (455)
Q Consensus 353 ~~Ld 356 (455)
...|
T Consensus 189 ~~~~ 192 (256)
T PF08423_consen 189 TKID 192 (256)
T ss_dssp SSTT
T ss_pred ecCC
Confidence 3333
No 449
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.66 E-value=0.0084 Score=66.96 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=44.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH---cCCcEEEEecccc---------------------CChHHHHHHHH---h
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY---LKFDIYDMELASL---------------------RSNSDLRRLLV---S 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~---l~~~v~~l~~~~~---------------------~~~~~l~~ll~---~ 289 (455)
|++..+-++++||||||||+|+..++.. .|..+..++...- .....+..++. .
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 6777778999999999999999654432 2445555443221 11122222222 2
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
...+.+|+||-|..+..
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 23678999999998864
No 450
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.011 Score=60.90 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=28.7
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS 276 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~ 276 (455)
.++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 35678999999999999999999877 45555555443
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.66 E-value=0.0059 Score=61.37 Aligned_cols=28 Identities=18% Similarity=0.524 Sum_probs=24.8
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..+.++++.||+|+||||+++++++.+.
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 3467999999999999999999998873
No 452
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.64 E-value=0.0055 Score=55.48 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
++..++.||.|+|||+++++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999986544
No 453
>PLN02674 adenylate kinase
Probab=96.63 E-value=0.0021 Score=62.41 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+..++|.||||+||+|+++.||..+++..+.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his 61 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA 61 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4569999999999999999999999876553
No 454
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.63 E-value=0.0079 Score=57.39 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=29.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|++....++++||||||||+++..++... +..++.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67777889999999999999999877543 555666654
No 455
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.63 E-value=0.0051 Score=62.78 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=39.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC----CcEEEEecc-c--------------cC-ChHHHHHHHHhh--CCceEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK----FDIYDMELA-S--------------LR-SNSDLRRLLVST--GNRSILVI 298 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~----~~v~~l~~~-~--------------~~-~~~~l~~ll~~~--~~~~IL~i 298 (455)
...+++.||+|+||||+++++.+++. ..++.+.-. + +. ....+.+.+... ..|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 34689999999999999999998774 233333210 0 00 111234444332 47899999
Q ss_pred eccc
Q 047029 299 EDID 302 (455)
Q Consensus 299 DEiD 302 (455)
||+.
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9995
No 456
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0032 Score=57.67 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=32.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL 277 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~ 277 (455)
+..+.|+|.+|+||||+|.|+...| |+.+|.+|...+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 4568899999999999999999988 888888876654
No 457
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.61 E-value=0.01 Score=66.64 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=41.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC----------ChHHHHHHHHh-------hCCceEEEEecc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR----------SNSDLRRLLVS-------TGNRSILVIEDI 301 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~----------~~~~l~~ll~~-------~~~~~IL~iDEi 301 (455)
+-++|.|+||||||++++++...+ |..+.-+-.+... ....+.+++.. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 467999999999999999997655 6666665443320 11223333221 124589999999
Q ss_pred cch
Q 047029 302 DCS 304 (455)
Q Consensus 302 D~l 304 (455)
..+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 865
No 458
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.61 E-value=0.0066 Score=54.84 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=19.4
Q ss_pred ceeEEECCCCCChHH-HHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSS-LIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTs-la~alA~~l 265 (455)
+++++.||+|||||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555555554
No 459
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.61 E-value=0.0043 Score=67.76 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.4
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445669999999999999999999976
No 460
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.61 E-value=0.012 Score=67.46 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=41.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc----------CChHHHHHHHHh-------hCCceEEEEeccc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL----------RSNSDLRRLLVS-------TGNRSILVIEDID 302 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~----------~~~~~l~~ll~~-------~~~~~IL~iDEiD 302 (455)
-++|.|+||||||++++++...+ |+.++-+-.+.. .....+..++.. .....||||||+.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 46899999999999998876544 777776644332 012334444422 1245799999998
Q ss_pred ch
Q 047029 303 CS 304 (455)
Q Consensus 303 ~l 304 (455)
.+
T Consensus 444 Mv 445 (988)
T PRK13889 444 MV 445 (988)
T ss_pred cC
Confidence 65
No 461
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.60 E-value=0.0047 Score=53.55 Aligned_cols=64 Identities=28% Similarity=0.332 Sum_probs=39.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc--------------------EEEEeccccCChHHHHHHH--HhhCCceEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD--------------------IYDMELASLRSNSDLRRLL--VSTGNRSILVI 298 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~--------------------v~~l~~~~~~~~~~l~~ll--~~~~~~~IL~i 298 (455)
..-++|+|+=|+|||++++++|+.+|.. ++-+|+--+.+..++..+- ......+|.+|
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~I 94 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVI 94 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEE
Confidence 4569999999999999999999999642 3334444444444443321 22234677777
Q ss_pred ecccch
Q 047029 299 EDIDCS 304 (455)
Q Consensus 299 DEiD~l 304 (455)
|=.+.+
T Consensus 95 EW~e~~ 100 (123)
T PF02367_consen 95 EWPERL 100 (123)
T ss_dssp ESGGGG
T ss_pred ECcccc
Confidence 654443
No 462
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.59 E-value=0.012 Score=53.55 Aligned_cols=27 Identities=44% Similarity=0.577 Sum_probs=23.6
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.+..-+.|.||+|+|||||++++++.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334568999999999999999999986
No 463
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.59 E-value=0.0064 Score=62.57 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=54.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC-------CcEEEEecccc--------------------CChHHHHHHHHhhCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK-------FDIYDMELASL--------------------RSNSDLRRLLVSTGNR 293 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~-------~~v~~l~~~~~--------------------~~~~~l~~ll~~~~~~ 293 (455)
++-+.|.||.|+||||.++-||..+. ..++.+|.--+ .+..++...+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 67799999999999988888877663 33444443222 3456677777777777
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL 335 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~ 335 (455)
.+|++|=+.... .....+++|-.+++..
T Consensus 283 d~ILVDTaGrs~--------------~D~~~i~el~~~~~~~ 310 (407)
T COG1419 283 DVILVDTAGRSQ--------------YDKEKIEELKELIDVS 310 (407)
T ss_pred CEEEEeCCCCCc--------------cCHHHHHHHHHHHhcc
Confidence 899999887532 2334556666666654
No 464
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.59 E-value=0.0023 Score=62.18 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.9
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
++|.|+||+||||+|+++|..+ +.+++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 6899999999999999999988 456665543
No 465
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.59 E-value=0.0029 Score=57.91 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-++|.|+||+||||+++++++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999985
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.58 E-value=0.002 Score=59.71 Aligned_cols=26 Identities=27% Similarity=0.686 Sum_probs=23.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
...+++.||+|+||||+++++++.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56899999999999999999999874
No 467
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.58 E-value=0.0015 Score=69.78 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=64.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc--c------CChHHHHHHHHh-----hCCceEEEEecccchhhhhh
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS--L------RSNSDLRRLLVS-----TGNRSILVIEDIDCSIELEN 309 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~--~------~~~~~l~~ll~~-----~~~~~IL~iDEiD~l~~~~~ 309 (455)
++||.|.||||||-+.+.+++-....++..-.+. + ....--++.-.+ ...+.|-+|||+|.+-+ .
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMnd--q 561 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMND--Q 561 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcc--c
Confidence 4999999999999999999998877776543221 1 000001111111 13578999999998743 1
Q ss_pred hcCCCCCCCCcchh--hHhhhhhhhhcccccCCCceEEEEEcCCC-----------C--CCCccccCCCceeEEE
Q 047029 310 RQCGGGYDENNSQV--TLSGLLNFVDGLWSSCGDERIIVFTTNYK-----------E--RLDPALLRPGRMDMHI 369 (455)
Q Consensus 310 ~~~~~~~~~~~~~~--~ls~LL~~ldg~~~~~~~~~ivI~TTN~~-----------~--~Ld~allRpGR~d~~I 369 (455)
.+......-..+.. .-.++...+.+ ...||+|+|+. + .|-+.++. |||..-
T Consensus 562 DRtSIHEAMEQQSISISKAGIVtsLqA-------rctvIAAanPigGRY~~s~tFaqNV~ltePIlS--RFDiLc 627 (854)
T KOG0477|consen 562 DRTSIHEAMEQQSISISKAGIVTSLQA-------RCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--RFDILC 627 (854)
T ss_pred ccchHHHHHHhcchhhhhhhHHHHHHh-------hhhhheecCCCCCccCCccchhhccccccchhh--hcceee
Confidence 11110000111111 22234444332 24588899873 1 45667788 998643
No 468
>PRK14529 adenylate kinase; Provisional
Probab=96.56 E-value=0.0017 Score=62.19 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=25.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.++|.||||+||||+++.||..+++..+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3789999999999999999999998765
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.56 E-value=0.0047 Score=67.35 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
++..-+.+.||+|+|||||++.+++.+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445569999999999999999999987
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.56 E-value=0.0028 Score=59.59 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=25.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
+.-+++.|+||+||||+++.+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 45689999999999999999999998654
No 471
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.55 E-value=0.0024 Score=58.87 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.5
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
+.|+|+||+||||+++.+++ +|+++++.|.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~ 31 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADK 31 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCH
Confidence 67999999999999999999 8888877653
No 472
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.54 E-value=0.012 Score=57.61 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.9
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~ 276 (455)
|+.+..-++|.||||+|||+++..+|..+ +.++..+.+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 56666779999999999999999887764 66777776543
No 473
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.53 E-value=0.0046 Score=68.78 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++..-+-+.|++|||||||++.+.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4444459999999999999999999887
No 474
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.53 E-value=0.0045 Score=63.33 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.-+++.|.||||||.|+-.+|..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 475
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0034 Score=57.41 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=26.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+.-+.|.|+||+|||+++++++..+ +.++..++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id 39 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLD 39 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4568999999999999999999988 33444444
No 476
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.52 E-value=0.012 Score=59.78 Aligned_cols=130 Identities=17% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC----------------------------hHHHHHHHHhh-
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS----------------------------NSDLRRLLVST- 290 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~----------------------------~~~l~~ll~~~- 290 (455)
.|..+.|||-.|||||.+++.+-+.++.+.+.+++-+.-+ -..+..+|.+.
T Consensus 29 ~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~ 108 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWP 108 (438)
T ss_pred cceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhH
Confidence 4667899999999999999999999988877776533200 01222333331
Q ss_pred --C---CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCce
Q 047029 291 --G---NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRM 365 (455)
Q Consensus 291 --~---~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~ 365 (455)
. ....|++|.+|.+-+ -....+..|+..-.-+ ..+.++|...-++. .+.-+.+-|-+
T Consensus 109 ~~t~~d~~~~liLDnad~lrD-------------~~a~ll~~l~~L~el~----~~~~i~iils~~~~-e~~y~~n~g~~ 170 (438)
T KOG2543|consen 109 AATNRDQKVFLILDNADALRD-------------MDAILLQCLFRLYELL----NEPTIVIILSAPSC-EKQYLINTGTL 170 (438)
T ss_pred HhhccCceEEEEEcCHHhhhc-------------cchHHHHHHHHHHHHh----CCCceEEEEecccc-HHHhhcccCCC
Confidence 1 246899999998742 1123344443322111 12233333332210 01122234444
Q ss_pred e-EEEEeCCCCHHHHHHHHHHhh
Q 047029 366 D-MHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 366 d-~~I~~~~p~~~~~~~L~~~~l 387 (455)
+ ..++||.++.++.++|+.+-.
T Consensus 171 ~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 171 EIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred CceEEecCCCCHHHHHHHHhcCC
Confidence 4 567999999999888876543
No 477
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.52 E-value=0.0047 Score=66.59 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.7
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
++..-+.+.||+|+|||||++.+++.+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445569999999999999999999887
No 478
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.52 E-value=0.012 Score=54.18 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.0
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+..-+.|.||+|+|||||++.+++.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999976
No 479
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.51 E-value=0.0028 Score=57.25 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=30.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL 277 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~ 277 (455)
.-++|.|.||+|||++|+++.+.| +.+++.++...+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 358899999999999999999988 778888876654
No 480
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.46 E-value=0.0042 Score=64.99 Aligned_cols=169 Identities=21% Similarity=0.139 Sum_probs=94.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhc--CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRR 285 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ 285 (455)
.+.|..++|+.++-.|. .+++.-..-| +...-+++|-|.||+.||-|.+.+.+.....+|..--++-+ --|..
T Consensus 343 EIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG--VGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG--VGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc--cccch
Confidence 46677888887765443 1211111011 22233599999999999999999999887777765433211 01111
Q ss_pred H-HHh--------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC
Q 047029 286 L-LVS--------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN 350 (455)
Q Consensus 286 l-l~~--------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN 350 (455)
. +.. .....|-+|||+|.+.+. .|.. .. +--.+++.|--- -|+...-....-|+++.|
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-DRtA-IH--EVMEQQTISIaK---AGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-DRTA-IH--EVMEQQTISIAK---AGINTTLNARTSILAAAN 490 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-hhHH-HH--HHHHhhhhhhhh---hccccchhhhHHhhhhcC
Confidence 1 100 124578999999987541 0000 00 000011111100 122222223345777887
Q ss_pred CCC-------------CCCccccCCCceeEEEEe-CCCCHHHHHHHHHHhhccc
Q 047029 351 YKE-------------RLDPALLRPGRMDMHIHM-SYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 351 ~~~-------------~Ld~allRpGR~d~~I~~-~~p~~~~~~~L~~~~l~~~ 390 (455)
+.. .|+.||++ |||...-+ +.|+.+.=..|+++..-.+
T Consensus 491 PayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH 542 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVH 542 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhh
Confidence 542 48899999 99976655 6788888778888765444
No 481
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.46 E-value=0.012 Score=64.02 Aligned_cols=85 Identities=22% Similarity=0.387 Sum_probs=54.7
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCce-eEEECCCCCChHHHHHHHHHHcC---CcEEEEec-----
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRG-YLLYGPPGTGKSSLIAAMANYLK---FDIYDMEL----- 274 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg-~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~----- 274 (455)
.+++++.+.++..+.+.+.+.. ++| +|+.||+|+||||+..++.++++ .+++.++-
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~ 357 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN 357 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec
Confidence 4688888888777666554431 345 78999999999999999888874 23443221
Q ss_pred -ccc-----C--ChHHHHHHHHhh--CCceEEEEecccc
Q 047029 275 -ASL-----R--SNSDLRRLLVST--GNRSILVIEDIDC 303 (455)
Q Consensus 275 -~~~-----~--~~~~l~~ll~~~--~~~~IL~iDEiD~ 303 (455)
..+ . ....+...+... ..|.||++.||..
T Consensus 358 ~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 358 LPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 111 1 112334444333 3699999999964
No 482
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.45 E-value=0.031 Score=54.08 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=73.9
Q ss_pred Cce-eEEECCCCCChHHHHHHHHHHcCCc---EEEEecccc-------------CC-------------hHHHHHHHHhh
Q 047029 241 KRG-YLLYGPPGTGKSSLIAAMANYLKFD---IYDMELASL-------------RS-------------NSDLRRLLVST 290 (455)
Q Consensus 241 ~rg-~LL~GPpGTGKTsla~alA~~l~~~---v~~l~~~~~-------------~~-------------~~~l~~ll~~~ 290 (455)
.+| +.++|+.|+|||.+.+|+...++-+ ++.++...+ .+ ...|..++..-
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 454 6788999999999999888877432 223332222 11 12233333444
Q ss_pred CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCC------Cc
Q 047029 291 GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRP------GR 364 (455)
Q Consensus 291 ~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRp------GR 364 (455)
..|.++++||.+.+.. ..-..+.-|.|.-++... .-.++.|+ +| +|.+.+++| -|
T Consensus 130 ~r~v~l~vdEah~L~~-------------~~le~Lrll~nl~~~~~~--~l~ivL~G---qp-~L~~~lr~~~l~e~~~R 190 (269)
T COG3267 130 KRPVVLMVDEAHDLND-------------SALEALRLLTNLEEDSSK--LLSIVLIG---QP-KLRPRLRLPVLRELEQR 190 (269)
T ss_pred CCCeEEeehhHhhhCh-------------hHHHHHHHHHhhcccccC--ceeeeecC---Cc-ccchhhchHHHHhhhhe
Confidence 5678999999997642 111222222232222111 11133333 22 123322211 29
Q ss_pred eeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 365 MDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 365 ~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
++..|++++.+.++....++..++..
T Consensus 191 ~~ir~~l~P~~~~~t~~yl~~~Le~a 216 (269)
T COG3267 191 IDIRIELPPLTEAETGLYLRHRLEGA 216 (269)
T ss_pred EEEEEecCCcChHHHHHHHHHHHhcc
Confidence 99999999999998888888777654
No 483
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.44 E-value=0.0083 Score=59.26 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=29.1
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS 276 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~ 276 (455)
.++-++|.||+|+||||++..+|..+ |..+.-+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 35678889999999999999999877 55665555543
No 484
>PLN02459 probable adenylate kinase
Probab=96.44 E-value=0.0035 Score=61.35 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=26.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++.+|+.+++..+..
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 488899999999999999999998766543
No 485
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.43 E-value=0.011 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=23.8
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
|++...-+.++||||+|||+++..+|.
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 667777799999999999999998875
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0025 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
-+++.||||+||||++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998854
No 487
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.42 E-value=0.0077 Score=60.44 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=31.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~ 276 (455)
|++...-++++||||||||+++..+|-.. +-.+++++...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 67767778999999999999999998653 23666776554
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.41 E-value=0.007 Score=61.16 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=27.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4568899999999999999999987 445554444
No 489
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.41 E-value=0.0087 Score=60.32 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=38.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH---------cCCcEEEEeccccCChHHHHHHHHh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY---------LKFDIYDMELASLRSNSDLRRLLVS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~---------l~~~v~~l~~~~~~~~~~l~~ll~~ 289 (455)
|++...-+.++||||||||.++..+|-. .+..+++++...--+...+.++...
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 6777778999999999999999877632 2456777776654355666666543
No 490
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.41 E-value=0.014 Score=54.81 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.7
Q ss_pred Ccee-EEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGY-LLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~-LL~GPpGTGKTsla~alA~~l 265 (455)
..|+ .|+||.|+|||+++.|+...+
T Consensus 20 ~~gl~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 20 GPRVNFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3454 799999999999999998644
No 491
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.40 E-value=0.0061 Score=66.66 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.2
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3445569999999999999999999887
No 492
>PRK12338 hypothetical protein; Provisional
Probab=96.39 E-value=0.0032 Score=63.26 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=26.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
|.-+++.|+|||||||+++++|..+|...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~ 32 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKH 32 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeE
Confidence 56789999999999999999999998754
No 493
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.38 E-value=0.023 Score=50.73 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.6
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
++++.|++|+|||+|+.++...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 4789999999999999999764
No 494
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.37 E-value=0.012 Score=60.45 Aligned_cols=27 Identities=44% Similarity=0.771 Sum_probs=24.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
+..+++.||.|||||++++++.+.+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 568899999999999999999988843
No 495
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.37 E-value=0.0058 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
.-+.+.||+|+||||+++++++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 358999999999999999999999864
No 496
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.36 E-value=0.0035 Score=67.87 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=30.2
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.++|.|+||+||||+.+.+|+.++++++++|.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 58999999999999999999999999999874
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.35 E-value=0.0072 Score=65.16 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.1
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999877
No 498
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.34 E-value=0.0063 Score=68.06 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.2
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++..-+.+.||+|+|||||++.+++.+
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445569999999999999999999887
No 499
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.029 Score=51.95 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=43.1
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcccc--Cchh---HHHhccCCHHHHHHHHHHHHHHh
Q 047029 367 MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVE--VTPA---EEFMKSEDADVALNGLVDFLLRK 433 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~--~tpa---~~l~~~~~~~~al~~l~~~l~~~ 433 (455)
..|.+.+|+.++.+.-+. ..+.+..+.|.+-+..+. +..+ .+++-++|.+.|+..+...+...
T Consensus 116 v~IFi~pPs~eeL~~RL~----~Rgtds~e~I~~Rl~~a~~Ei~~~~~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 116 VSIFILPPSLEELERRLK----GRGTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred EEEEEcCCCHHHHHHHHH----ccCCCCHHHHHHHHHHHHHHHHHHHhCCEEEECccHHHHHHHHHHHHHHH
Confidence 568889999887654443 344556667776665432 2222 45667899999999998888755
No 500
>PLN02165 adenylate isopentenyltransferase
Probab=96.32 E-value=0.0037 Score=63.13 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=29.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~ 275 (455)
+..+.|.||+|+|||+|+.+||..++..++..|.-
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34689999999999999999999999877766544
Done!