Query 047029
Match_columns 455
No_of_seqs 434 out of 3099
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 9.7E-40 3.3E-44 333.5 18.9 185 202-390 143-335 (405)
2 4b4t_I 26S protease regulatory 100.0 2.9E-39 1E-43 331.0 19.2 186 201-390 176-369 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.6E-38 5.4E-43 328.9 21.1 186 201-390 175-368 (437)
4 4b4t_M 26S protease regulatory 100.0 1.3E-38 4.4E-43 329.4 17.5 204 201-410 175-389 (434)
5 4b4t_K 26S protease regulatory 100.0 3.3E-38 1.1E-42 326.0 18.5 186 201-390 166-360 (428)
6 4b4t_H 26S protease regulatory 100.0 3.2E-38 1.1E-42 326.1 17.4 186 201-390 203-396 (467)
7 3cf2_A TER ATPase, transitiona 100.0 5.8E-33 2E-37 305.7 7.3 185 202-390 472-664 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.4E-31 8.3E-36 292.8 19.4 181 203-390 200-388 (806)
9 3cf0_A Transitional endoplasmi 100.0 1.1E-28 3.8E-33 244.6 19.4 186 201-390 9-202 (301)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.6E-27 1.2E-31 236.1 20.4 182 202-392 7-197 (322)
11 2x8a_A Nuclear valosin-contain 99.9 5.2E-27 1.8E-31 229.8 19.9 181 202-389 5-193 (274)
12 2qz4_A Paraplegin; AAA+, SPG7, 99.9 7.9E-27 2.7E-31 224.7 19.8 186 203-392 2-195 (262)
13 2ce7_A Cell division protein F 99.9 4E-27 1.4E-31 246.7 17.7 184 202-390 11-202 (476)
14 3h4m_A Proteasome-activating n 99.9 1.9E-26 6.3E-31 225.4 21.2 187 200-390 10-204 (285)
15 3eie_A Vacuolar protein sortin 99.9 4.9E-27 1.7E-31 234.8 17.1 184 200-392 11-202 (322)
16 1lv7_A FTSH; alpha/beta domain 99.9 7.6E-26 2.6E-30 218.3 20.1 184 201-389 6-197 (257)
17 2qp9_X Vacuolar protein sortin 99.9 2.6E-26 8.9E-31 232.8 15.4 183 201-392 45-235 (355)
18 2zan_A Vacuolar protein sortin 99.9 2.2E-25 7.6E-30 232.5 16.8 182 201-391 128-318 (444)
19 3d8b_A Fidgetin-like protein 1 99.9 5.8E-25 2E-29 223.0 19.2 247 201-455 78-356 (357)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 6.7E-25 2.3E-29 231.1 17.8 183 202-389 26-216 (499)
21 3vfd_A Spastin; ATPase, microt 99.9 6.4E-25 2.2E-29 225.0 16.9 188 199-394 107-302 (389)
22 3hu3_A Transitional endoplasmi 99.9 9.7E-25 3.3E-29 229.9 17.3 182 202-390 199-388 (489)
23 3b9p_A CG5977-PA, isoform A; A 99.9 3E-24 1E-28 211.1 16.0 186 201-394 15-209 (297)
24 2r62_A Cell division protease 99.9 4.4E-25 1.5E-29 213.9 8.9 185 202-389 6-198 (268)
25 3t15_A Ribulose bisphosphate c 99.9 1.7E-24 5.9E-29 213.8 13.0 165 234-404 29-214 (293)
26 1ixz_A ATP-dependent metallopr 99.9 2E-23 6.9E-28 200.9 18.0 184 201-389 10-201 (254)
27 1iy2_A ATP-dependent metallopr 99.9 2E-22 6.8E-27 196.9 17.9 184 201-389 34-225 (278)
28 1ypw_A Transitional endoplasmi 99.9 1.7E-25 6E-30 248.8 -6.8 184 202-389 472-663 (806)
29 1ypw_A Transitional endoplasmi 99.9 2.2E-21 7.6E-26 215.9 15.3 182 202-390 199-388 (806)
30 3pfi_A Holliday junction ATP-d 99.8 7.5E-19 2.6E-23 175.6 19.5 172 201-398 23-208 (338)
31 2c9o_A RUVB-like 1; hexameric 99.8 3.9E-20 1.3E-24 193.4 7.3 166 202-376 32-226 (456)
32 1hqc_A RUVB; extended AAA-ATPa 99.8 7E-18 2.4E-22 167.1 19.0 171 201-397 6-191 (324)
33 3syl_A Protein CBBX; photosynt 99.8 2.2E-18 7.4E-23 169.8 14.8 180 208-402 32-232 (309)
34 1g41_A Heat shock protein HSLU 99.8 3E-19 1E-23 185.0 6.2 162 208-383 16-188 (444)
35 2chg_A Replication factor C sm 99.7 3.6E-16 1.2E-20 144.4 20.1 160 201-396 11-183 (226)
36 3u61_B DNA polymerase accessor 99.7 4.5E-17 1.5E-21 161.9 14.5 152 201-387 20-178 (324)
37 1ofh_A ATP-dependent HSL prote 99.7 3.9E-17 1.3E-21 160.2 13.6 172 208-385 16-213 (310)
38 1sxj_A Activator 1 95 kDa subu 99.7 3.4E-16 1.1E-20 166.1 19.5 171 201-394 33-229 (516)
39 3uk6_A RUVB-like 2; hexameric 99.7 5.2E-16 1.8E-20 156.5 20.0 171 201-402 38-287 (368)
40 1d2n_A N-ethylmaleimide-sensit 99.7 1.8E-16 6.2E-21 153.8 14.4 167 207-385 33-210 (272)
41 3hws_A ATP-dependent CLP prote 99.7 2.8E-16 9.4E-21 159.1 15.6 174 208-385 16-267 (363)
42 1jbk_A CLPB protein; beta barr 99.7 1.1E-16 3.6E-21 144.7 10.3 152 202-383 17-194 (195)
43 1njg_A DNA polymerase III subu 99.7 2.9E-15 9.8E-20 139.9 20.1 161 201-396 17-207 (250)
44 3bos_A Putative DNA replicatio 99.7 5.2E-16 1.8E-20 146.0 13.9 173 198-400 19-200 (242)
45 3pvs_A Replication-associated 99.7 1.5E-15 5.2E-20 158.2 18.3 150 201-389 20-180 (447)
46 3m6a_A ATP-dependent protease 99.7 4.1E-16 1.4E-20 166.3 13.6 160 206-387 80-266 (543)
47 2r44_A Uncharacterized protein 99.7 8.3E-16 2.8E-20 153.3 14.4 152 205-389 25-200 (331)
48 2chq_A Replication factor C sm 99.6 1.2E-15 4.1E-20 150.1 15.0 160 201-396 11-183 (319)
49 4fcw_A Chaperone protein CLPB; 99.6 2.7E-15 9.3E-20 147.6 15.8 160 208-389 18-231 (311)
50 1sxj_B Activator 1 37 kDa subu 99.6 6.1E-15 2.1E-19 145.2 17.9 160 201-396 15-188 (323)
51 1sxj_D Activator 1 41 kDa subu 99.6 2.3E-15 7.9E-20 150.4 14.3 162 201-398 31-216 (353)
52 2v1u_A Cell division control p 99.6 3.1E-15 1.1E-19 150.7 15.2 165 201-389 13-216 (387)
53 1iqp_A RFCS; clamp loader, ext 99.6 5.2E-15 1.8E-19 145.9 16.4 158 201-394 19-189 (327)
54 1l8q_A Chromosomal replication 99.6 1.4E-15 4.8E-20 151.3 12.3 176 200-403 4-195 (324)
55 1jr3_A DNA polymerase III subu 99.6 1.8E-14 6.3E-19 145.0 20.0 161 201-396 10-200 (373)
56 1um8_A ATP-dependent CLP prote 99.6 1.5E-14 5.2E-19 146.9 19.2 174 208-385 22-284 (376)
57 2qby_B CDC6 homolog 3, cell di 99.6 1.8E-14 6E-19 145.7 19.0 151 207-388 20-211 (384)
58 1in4_A RUVB, holliday junction 99.6 9.2E-14 3.1E-18 139.2 22.6 178 201-404 19-211 (334)
59 3pxg_A Negative regulator of g 99.6 1.2E-14 4.2E-19 152.3 16.4 146 202-389 175-340 (468)
60 2p65_A Hypothetical protein PF 99.6 2.2E-15 7.5E-20 135.8 8.8 144 203-375 18-187 (187)
61 2z4s_A Chromosomal replication 99.6 1.9E-14 6.5E-19 149.7 16.5 172 199-398 97-287 (440)
62 1g8p_A Magnesium-chelatase 38 99.6 6.4E-15 2.2E-19 147.2 11.5 154 201-387 18-232 (350)
63 1qvr_A CLPB protein; coiled co 99.6 2.6E-14 8.8E-19 160.2 16.6 156 203-388 166-346 (854)
64 3te6_A Regulatory protein SIR3 99.6 3.1E-14 1.1E-18 141.6 15.3 130 240-390 44-214 (318)
65 1sxj_E Activator 1 40 kDa subu 99.6 4.2E-14 1.4E-18 141.7 15.9 158 201-393 8-212 (354)
66 2qby_A CDC6 homolog 1, cell di 99.5 6.4E-14 2.2E-18 140.8 15.7 163 200-388 13-211 (386)
67 1sxj_C Activator 1 40 kDa subu 99.5 1.1E-13 3.7E-18 138.7 17.3 155 201-391 19-186 (340)
68 1r6b_X CLPA protein; AAA+, N-t 99.5 1.2E-13 3.9E-18 152.9 18.7 159 202-389 181-364 (758)
69 1r6b_X CLPA protein; AAA+, N-t 99.5 7.3E-14 2.5E-18 154.5 17.1 154 208-388 459-667 (758)
70 2bjv_A PSP operon transcriptio 99.5 3.3E-14 1.1E-18 137.2 12.2 155 204-388 3-195 (265)
71 3pxi_A Negative regulator of g 99.5 9.8E-14 3.3E-18 153.6 16.9 146 202-389 175-340 (758)
72 1fnn_A CDC6P, cell division co 99.5 4.6E-13 1.6E-17 135.2 20.2 165 200-389 10-208 (389)
73 3pxi_A Negative regulator of g 99.5 1.2E-13 4.2E-18 152.8 16.9 156 207-389 491-677 (758)
74 3co5_A Putative two-component 99.4 6.7E-14 2.3E-18 123.0 4.5 132 208-374 5-142 (143)
75 3n70_A Transport activator; si 99.4 5.2E-13 1.8E-17 117.5 9.8 112 208-352 2-116 (145)
76 1a5t_A Delta prime, HOLB; zinc 99.4 6.6E-12 2.3E-16 125.7 18.7 125 240-387 23-180 (334)
77 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.7E-12 5.8E-17 136.8 12.5 146 208-388 23-197 (500)
78 1ojl_A Transcriptional regulat 99.4 1.5E-12 5E-17 128.9 11.1 151 208-388 3-191 (304)
79 1qvr_A CLPB protein; coiled co 99.4 1.8E-12 6.2E-17 145.3 13.1 155 207-388 558-771 (854)
80 3f9v_A Minichromosome maintena 99.3 1.4E-13 4.7E-18 148.3 1.8 128 243-390 329-493 (595)
81 3ec2_A DNA replication protein 99.3 1.5E-12 5.1E-17 118.2 8.0 128 203-353 6-144 (180)
82 4akg_A Glutathione S-transfera 99.3 9.9E-12 3.4E-16 151.3 16.6 135 241-388 1267-1432(2695)
83 2gno_A DNA polymerase III, gam 99.3 8.5E-12 2.9E-16 123.6 13.0 123 241-388 18-153 (305)
84 2w58_A DNAI, primosome compone 99.2 2.8E-11 9.5E-16 111.6 9.7 97 202-304 20-127 (202)
85 1w5s_A Origin recognition comp 99.2 1.2E-10 4.2E-15 118.3 14.5 166 203-388 18-229 (412)
86 2qgz_A Helicase loader, putati 99.1 7.3E-11 2.5E-15 116.9 6.8 96 203-304 120-226 (308)
87 1svm_A Large T antigen; AAA+ f 99.1 9.6E-11 3.3E-15 119.2 7.6 121 236-373 164-284 (377)
88 1tue_A Replication protein E1; 99.1 2.6E-10 8.9E-15 105.9 9.0 115 237-375 54-180 (212)
89 3cmw_A Protein RECA, recombina 99.0 6.8E-10 2.3E-14 130.3 11.1 146 204-352 1017-1218(1706)
90 3k1j_A LON protease, ATP-depen 99.0 4.8E-10 1.6E-14 121.0 7.8 52 201-267 35-86 (604)
91 2kjq_A DNAA-related protein; s 98.9 1.2E-09 4.1E-14 96.7 7.1 100 240-366 35-140 (149)
92 2fna_A Conserved hypothetical 98.9 8.4E-08 2.9E-12 94.8 20.8 149 204-388 10-223 (357)
93 3vkg_A Dynein heavy chain, cyt 98.9 2.1E-08 7.3E-13 123.2 16.6 135 241-388 1304-1470(3245)
94 2qen_A Walker-type ATPase; unk 98.8 4.6E-07 1.6E-11 89.4 22.4 176 202-410 7-240 (350)
95 2vhj_A Ntpase P4, P4; non- hyd 98.8 2.5E-09 8.4E-14 106.0 5.4 116 237-359 119-242 (331)
96 2r2a_A Uncharacterized protein 98.8 7E-09 2.4E-13 96.3 8.2 120 242-377 6-156 (199)
97 1u0j_A DNA replication protein 98.7 4.4E-08 1.5E-12 94.6 11.6 122 239-384 102-248 (267)
98 4akg_A Glutathione S-transfera 98.7 3.8E-08 1.3E-12 120.3 13.1 126 241-385 645-791 (2695)
99 3dzd_A Transcriptional regulat 98.6 4.7E-07 1.6E-11 91.7 15.2 153 208-389 130-318 (368)
100 1ny5_A Transcriptional regulat 98.6 3.1E-07 1.1E-11 93.6 13.0 154 206-388 136-326 (387)
101 3f8t_A Predicted ATPase involv 98.6 3.2E-08 1.1E-12 102.4 5.5 141 209-378 215-385 (506)
102 3vkg_A Dynein heavy chain, cyt 98.4 7.8E-07 2.7E-11 109.7 12.9 130 241-389 604-755 (3245)
103 3cmu_A Protein RECA, recombina 98.4 4.1E-07 1.4E-11 108.2 9.6 111 237-351 1423-1562(2050)
104 1ye8_A Protein THEP1, hypothet 98.1 7.1E-06 2.4E-10 74.4 9.4 27 243-269 2-28 (178)
105 1jr3_D DNA polymerase III, del 98.1 2.6E-05 8.9E-10 77.5 12.5 134 241-400 18-168 (343)
106 1z6t_A APAF-1, apoptotic prote 97.9 0.00018 6.3E-09 76.5 16.5 164 203-410 120-322 (591)
107 2cvh_A DNA repair and recombin 97.9 6.4E-05 2.2E-09 69.0 10.8 40 237-276 16-55 (220)
108 1n0w_A DNA repair protein RAD5 97.8 7.4E-05 2.5E-09 69.7 10.0 40 237-276 20-68 (243)
109 3hr8_A Protein RECA; alpha and 97.8 9.3E-05 3.2E-09 74.4 10.9 113 237-352 57-197 (356)
110 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00011 3.6E-09 67.9 10.3 37 237-273 19-58 (235)
111 3sfz_A APAF-1, apoptotic pepti 97.7 0.0006 2E-08 78.2 17.3 165 202-410 119-322 (1249)
112 2zr9_A Protein RECA, recombina 97.7 0.00011 3.6E-09 73.8 9.4 69 237-305 57-152 (349)
113 2z43_A DNA repair and recombin 97.7 7.8E-05 2.7E-09 73.8 8.2 40 237-276 103-151 (324)
114 3trf_A Shikimate kinase, SK; a 97.7 2.2E-05 7.4E-10 70.6 3.7 33 241-273 5-37 (185)
115 1u94_A RECA protein, recombina 97.6 0.00014 4.9E-09 73.1 9.7 70 237-306 59-155 (356)
116 3cmu_A Protein RECA, recombina 97.6 0.00012 4.1E-09 87.4 10.4 71 237-307 1077-1174(2050)
117 3upu_A ATP-dependent DNA helic 97.6 0.00023 7.8E-09 73.8 11.4 61 201-274 18-82 (459)
118 3vaa_A Shikimate kinase, SK; s 97.6 3E-05 1E-09 70.9 4.0 33 241-273 25-57 (199)
119 1nlf_A Regulatory protein REPA 97.6 0.00016 5.4E-09 69.8 9.2 29 237-265 26-54 (279)
120 1qhx_A CPT, protein (chloramph 97.6 4.9E-05 1.7E-09 67.7 5.2 35 241-275 3-37 (178)
121 3kb2_A SPBC2 prophage-derived 97.6 5.2E-05 1.8E-09 66.8 5.3 32 243-274 3-34 (173)
122 2ehv_A Hypothetical protein PH 97.6 0.00019 6.7E-09 67.1 9.3 26 237-262 26-51 (251)
123 2rhm_A Putative kinase; P-loop 97.6 3.3E-05 1.1E-09 69.6 3.8 35 238-272 2-36 (193)
124 3e1s_A Exodeoxyribonuclease V, 97.6 0.00019 6.6E-09 76.7 10.2 64 241-304 204-291 (574)
125 1xp8_A RECA protein, recombina 97.5 0.00027 9.1E-09 71.3 10.0 69 237-305 70-165 (366)
126 1v5w_A DMC1, meiotic recombina 97.5 0.00029 9.9E-09 70.3 10.0 40 237-276 118-166 (343)
127 1pzn_A RAD51, DNA repair and r 97.5 0.00027 9.1E-09 70.8 9.8 29 237-265 127-155 (349)
128 4a74_A DNA repair and recombin 97.5 0.0002 6.8E-09 66.1 8.1 29 237-265 21-49 (231)
129 2orw_A Thymidine kinase; TMTK, 97.5 6.6E-05 2.3E-09 68.3 4.3 63 242-304 4-88 (184)
130 1zuh_A Shikimate kinase; alpha 97.5 6E-05 2.1E-09 66.7 3.7 32 242-273 8-39 (168)
131 3iij_A Coilin-interacting nucl 97.4 6E-05 2E-09 67.5 3.4 32 241-272 11-42 (180)
132 2iyv_A Shikimate kinase, SK; t 97.4 6.3E-05 2.2E-09 67.5 3.6 32 242-273 3-34 (184)
133 1via_A Shikimate kinase; struc 97.4 6.2E-05 2.1E-09 67.1 3.4 30 243-272 6-35 (175)
134 1y63_A LMAJ004144AAA protein; 97.4 7.1E-05 2.4E-09 67.6 3.6 33 241-273 10-43 (184)
135 3io5_A Recombination and repai 97.4 0.00048 1.6E-08 68.0 9.7 69 237-306 25-125 (333)
136 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.6E-09 65.1 4.6 31 241-271 4-34 (173)
137 2r8r_A Sensor protein; KDPD, P 97.4 0.00032 1.1E-08 65.9 7.9 61 242-304 7-96 (228)
138 1g5t_A COB(I)alamin adenosyltr 97.4 0.00071 2.4E-08 62.2 9.9 110 241-372 28-178 (196)
139 2i1q_A DNA repair and recombin 97.3 0.0004 1.4E-08 68.3 8.3 28 237-264 94-121 (322)
140 1qf9_A UMP/CMP kinase, protein 97.3 9.9E-05 3.4E-09 66.2 3.5 33 240-272 5-37 (194)
141 2cdn_A Adenylate kinase; phosp 97.3 0.00013 4.4E-09 66.6 4.0 32 241-272 20-51 (201)
142 1e6c_A Shikimate kinase; phosp 97.3 0.0001 3.5E-09 65.1 3.3 32 242-273 3-34 (173)
143 1tev_A UMP-CMP kinase; ploop, 97.3 0.00012 4.1E-09 65.7 3.4 32 241-272 3-34 (196)
144 3lw7_A Adenylate kinase relate 97.3 0.00013 4.4E-09 64.0 3.5 29 243-272 3-31 (179)
145 1gvn_B Zeta; postsegregational 97.3 0.00037 1.3E-08 67.8 7.1 35 240-274 32-66 (287)
146 2ze6_A Isopentenyl transferase 97.3 0.00015 5.1E-09 69.2 4.1 33 243-275 3-35 (253)
147 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.8E-09 65.5 3.6 33 241-273 9-41 (196)
148 3t61_A Gluconokinase; PSI-biol 97.2 0.00017 5.8E-09 65.8 4.0 32 241-272 18-49 (202)
149 2pt5_A Shikimate kinase, SK; a 97.2 0.00015 5.2E-09 63.8 3.5 31 243-273 2-32 (168)
150 3be4_A Adenylate kinase; malar 97.2 0.00014 4.9E-09 67.3 3.3 31 242-272 6-36 (217)
151 1zp6_A Hypothetical protein AT 97.2 0.00016 5.5E-09 65.0 3.5 36 238-273 6-41 (191)
152 2bwj_A Adenylate kinase 5; pho 97.2 0.00016 5.3E-09 65.4 3.4 32 241-272 12-43 (199)
153 3cm0_A Adenylate kinase; ATP-b 97.2 0.00013 4.4E-09 65.4 2.7 31 242-272 5-35 (186)
154 1zd8_A GTP:AMP phosphotransfer 97.2 0.00016 5.6E-09 67.3 3.4 32 241-272 7-38 (227)
155 1aky_A Adenylate kinase; ATP:A 97.2 0.00019 6.5E-09 66.4 3.7 32 241-272 4-35 (220)
156 3dl0_A Adenylate kinase; phosp 97.2 0.00018 6.2E-09 66.2 3.5 30 243-272 2-31 (216)
157 2p5t_B PEZT; postsegregational 97.2 0.00045 1.6E-08 65.6 6.4 39 239-277 30-68 (253)
158 3cmw_A Protein RECA, recombina 97.2 0.0006 2E-08 80.6 8.6 70 237-306 30-126 (1706)
159 1kht_A Adenylate kinase; phosp 97.2 0.00023 8E-09 63.6 4.0 25 242-266 4-28 (192)
160 1ly1_A Polynucleotide kinase; 97.2 0.00016 5.5E-09 64.1 2.9 30 241-270 2-32 (181)
161 3lda_A DNA repair protein RAD5 97.2 0.00098 3.4E-08 68.0 9.0 27 237-263 174-200 (400)
162 3fb4_A Adenylate kinase; psych 97.1 0.0002 6.8E-09 65.9 3.4 30 243-272 2-31 (216)
163 2vli_A Antibiotic resistance p 97.1 0.00023 7.7E-09 63.5 3.6 30 241-270 5-34 (183)
164 2pez_A Bifunctional 3'-phospho 97.1 0.00038 1.3E-08 62.1 5.1 34 241-274 5-41 (179)
165 1knq_A Gluconate kinase; ALFA/ 97.1 0.00027 9.2E-09 62.7 4.0 31 241-271 8-38 (175)
166 1ukz_A Uridylate kinase; trans 97.1 0.00025 8.5E-09 64.6 3.7 33 241-273 15-47 (203)
167 1ak2_A Adenylate kinase isoenz 97.1 0.00026 8.7E-09 66.4 3.8 31 242-272 17-47 (233)
168 2zts_A Putative uncharacterize 97.1 0.0017 5.7E-08 60.5 9.4 38 237-274 26-67 (251)
169 2a5y_B CED-4; apoptosis; HET: 97.1 0.014 4.7E-07 61.7 17.5 158 211-410 132-331 (549)
170 4eun_A Thermoresistant glucoki 97.1 0.00041 1.4E-08 63.3 4.7 30 241-270 29-58 (200)
171 2pbr_A DTMP kinase, thymidylat 97.1 0.00046 1.6E-08 61.9 4.8 32 243-274 2-36 (195)
172 1zak_A Adenylate kinase; ATP:A 97.1 0.00019 6.4E-09 66.6 2.2 31 241-271 5-35 (222)
173 3tlx_A Adenylate kinase 2; str 97.0 0.00034 1.2E-08 66.2 3.7 33 240-272 28-60 (243)
174 3umf_A Adenylate kinase; rossm 97.0 0.00049 1.7E-08 64.3 4.6 31 240-270 28-58 (217)
175 1e4v_A Adenylate kinase; trans 97.0 0.00032 1.1E-08 64.7 3.1 30 243-272 2-31 (214)
176 3crm_A TRNA delta(2)-isopenten 97.0 0.00046 1.6E-08 68.3 4.4 34 241-274 5-38 (323)
177 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00023 8E-09 71.3 2.0 49 213-270 5-53 (359)
178 2bbw_A Adenylate kinase 4, AK4 96.9 0.00056 1.9E-08 64.5 4.4 31 241-271 27-57 (246)
179 1cke_A CK, MSSA, protein (cyti 96.9 0.00065 2.2E-08 62.8 4.6 30 242-271 6-35 (227)
180 2b8t_A Thymidine kinase; deoxy 96.9 0.0022 7.5E-08 60.1 8.2 62 243-304 14-101 (223)
181 2z0h_A DTMP kinase, thymidylat 96.9 0.00072 2.5E-08 60.8 4.7 31 244-274 3-36 (197)
182 2v54_A DTMP kinase, thymidylat 96.9 0.00065 2.2E-08 61.5 4.4 34 241-274 4-38 (204)
183 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 63.4 4.2 30 243-272 2-31 (223)
184 2if2_A Dephospho-COA kinase; a 96.9 0.00041 1.4E-08 63.1 2.9 31 243-274 3-33 (204)
185 4gp7_A Metallophosphoesterase; 96.9 0.0017 5.8E-08 57.8 6.9 20 241-260 9-28 (171)
186 2jaq_A Deoxyguanosine kinase; 96.9 0.00061 2.1E-08 61.5 4.0 28 243-270 2-29 (205)
187 1vt4_I APAF-1 related killer D 96.9 0.006 2E-07 69.0 12.6 54 210-275 131-190 (1221)
188 1nks_A Adenylate kinase; therm 96.9 0.00044 1.5E-08 61.8 2.9 24 243-266 3-26 (194)
189 2plr_A DTMP kinase, probable t 96.9 0.0013 4.6E-08 59.6 6.1 31 242-272 5-37 (213)
190 3sr0_A Adenylate kinase; phosp 96.8 0.00069 2.4E-08 62.7 4.1 29 243-271 2-30 (206)
191 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.6E-08 60.5 5.3 33 241-273 25-60 (200)
192 3nwj_A ATSK2; P loop, shikimat 96.8 0.00058 2E-08 65.2 3.5 33 241-273 48-80 (250)
193 3kl4_A SRP54, signal recogniti 96.8 0.0062 2.1E-07 62.6 11.2 61 213-274 69-133 (433)
194 3ake_A Cytidylate kinase; CMP 96.8 0.001 3.5E-08 60.3 4.8 31 243-273 4-34 (208)
195 1jjv_A Dephospho-COA kinase; P 96.8 0.00054 1.9E-08 62.5 2.9 30 243-273 4-33 (206)
196 2fz4_A DNA repair protein RAD2 96.8 0.0067 2.3E-07 57.0 10.5 31 243-273 110-140 (237)
197 3r20_A Cytidylate kinase; stru 96.8 0.00096 3.3E-08 63.0 4.5 32 241-272 9-40 (233)
198 2c9o_A RUVB-like 1; hexameric 96.8 0.0061 2.1E-07 63.0 11.0 85 293-401 296-393 (456)
199 2grj_A Dephospho-COA kinase; T 96.8 0.00066 2.3E-08 62.1 3.2 32 242-273 13-44 (192)
200 4b3f_X DNA-binding protein smu 96.7 0.0022 7.5E-08 69.3 7.6 57 205-276 184-243 (646)
201 3jvv_A Twitching mobility prot 96.7 0.0019 6.4E-08 64.9 6.4 60 243-302 125-206 (356)
202 1uf9_A TT1252 protein; P-loop, 96.7 0.00089 3E-08 60.5 3.4 32 241-273 8-39 (203)
203 2wwf_A Thymidilate kinase, put 96.7 0.00056 1.9E-08 62.4 2.0 28 241-268 10-37 (212)
204 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0013 4.5E-08 62.7 4.6 32 242-273 5-39 (260)
205 2v3c_C SRP54, signal recogniti 96.6 0.0037 1.3E-07 64.4 8.0 64 241-304 99-192 (432)
206 3tkl_A RAS-related protein RAB 96.6 0.013 4.6E-07 51.9 10.7 24 242-265 17-40 (196)
207 1w4r_A Thymidine kinase; type 96.6 0.0088 3E-07 54.8 9.4 63 242-304 21-103 (195)
208 4e22_A Cytidylate kinase; P-lo 96.6 0.0018 6.3E-08 61.4 4.9 30 242-271 28-57 (252)
209 2h92_A Cytidylate kinase; ross 96.6 0.0012 4.2E-08 60.6 3.6 32 242-273 4-35 (219)
210 2yvu_A Probable adenylyl-sulfa 96.5 0.0025 8.5E-08 57.1 5.4 33 241-273 13-48 (186)
211 1kao_A RAP2A; GTP-binding prot 96.5 0.013 4.6E-07 50.0 9.9 23 242-264 4-26 (167)
212 2qor_A Guanylate kinase; phosp 96.5 0.0016 5.3E-08 59.6 4.0 29 238-266 9-37 (204)
213 1vht_A Dephospho-COA kinase; s 96.5 0.0013 4.4E-08 60.6 3.4 32 241-273 4-35 (218)
214 1kgd_A CASK, peripheral plasma 96.5 0.0017 5.8E-08 58.2 4.0 26 241-266 5-30 (180)
215 1nn5_A Similar to deoxythymidy 96.5 0.00083 2.8E-08 61.3 1.8 26 241-266 9-34 (215)
216 2qt1_A Nicotinamide riboside k 96.5 0.0011 3.7E-08 60.6 2.5 33 241-273 21-54 (207)
217 1q3t_A Cytidylate kinase; nucl 96.4 0.0023 8E-08 59.8 4.7 33 241-273 16-48 (236)
218 2dr3_A UPF0273 protein PH0284; 96.4 0.0024 8.1E-08 59.4 4.7 38 237-274 19-59 (247)
219 2bdt_A BH3686; alpha-beta prot 96.4 0.0019 6.6E-08 57.9 3.9 25 243-267 4-28 (189)
220 2j41_A Guanylate kinase; GMP, 96.4 0.0017 5.8E-08 58.8 3.5 26 240-265 5-30 (207)
221 1ltq_A Polynucleotide kinase; 96.4 0.0012 4E-08 63.9 2.5 30 241-270 2-32 (301)
222 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.1E-08 61.3 3.7 28 241-268 22-49 (252)
223 1rz3_A Hypothetical protein rb 96.4 0.0071 2.4E-07 55.1 7.5 35 241-275 22-59 (201)
224 2iut_A DNA translocase FTSK; n 96.4 0.024 8E-07 60.2 12.4 74 294-384 345-420 (574)
225 2r6a_A DNAB helicase, replicat 96.3 0.0095 3.2E-07 61.5 9.1 38 237-274 199-240 (454)
226 3a8t_A Adenylate isopentenyltr 96.3 0.0016 5.3E-08 64.9 3.0 36 242-277 41-76 (339)
227 1z0j_A RAB-22, RAS-related pro 96.3 0.0081 2.8E-07 51.8 7.3 24 242-265 7-30 (170)
228 2ius_A DNA translocase FTSK; n 96.3 0.022 7.4E-07 59.8 11.7 74 294-384 299-374 (512)
229 2qmh_A HPR kinase/phosphorylas 96.3 0.0018 6E-08 59.7 3.0 32 241-273 34-65 (205)
230 3foz_A TRNA delta(2)-isopenten 96.3 0.0025 8.5E-08 62.7 4.2 34 241-274 10-43 (316)
231 2px0_A Flagellar biosynthesis 96.3 0.0081 2.8E-07 58.6 7.9 61 241-301 105-191 (296)
232 1m7g_A Adenylylsulfate kinase; 96.3 0.0031 1.1E-07 57.8 4.5 33 241-273 25-61 (211)
233 2ce2_X GTPase HRAS; signaling 96.3 0.017 5.8E-07 49.2 8.9 23 243-265 5-27 (166)
234 3tau_A Guanylate kinase, GMP k 96.2 0.0025 8.5E-08 58.5 3.6 27 241-267 8-34 (208)
235 2f6r_A COA synthase, bifunctio 96.2 0.0022 7.5E-08 62.0 3.2 32 241-273 75-106 (281)
236 1nrj_B SR-beta, signal recogni 96.2 0.014 4.9E-07 53.0 8.6 25 241-265 12-36 (218)
237 3c8u_A Fructokinase; YP_612366 96.2 0.004 1.4E-07 57.0 4.8 26 241-266 22-47 (208)
238 1g41_A Heat shock protein HSLU 96.2 0.0039 1.3E-07 64.3 5.2 93 285-384 243-346 (444)
239 3tr0_A Guanylate kinase, GMP k 96.2 0.0032 1.1E-07 56.9 4.0 26 241-266 7-32 (205)
240 1ek0_A Protein (GTP-binding pr 96.1 0.0099 3.4E-07 51.1 6.8 24 242-265 4-27 (170)
241 2gxq_A Heat resistant RNA depe 96.1 0.017 5.7E-07 52.1 8.6 24 241-264 38-62 (207)
242 3fdi_A Uncharacterized protein 96.1 0.0035 1.2E-07 57.6 4.0 30 242-271 7-36 (201)
243 3b9q_A Chloroplast SRP recepto 96.1 0.0048 1.6E-07 60.4 5.2 53 213-265 70-124 (302)
244 3zvl_A Bifunctional polynucleo 96.1 0.0018 6.2E-08 66.2 2.1 31 241-271 258-288 (416)
245 1u8z_A RAS-related protein RAL 96.1 0.025 8.5E-07 48.3 9.2 23 242-264 5-27 (168)
246 3d3q_A TRNA delta(2)-isopenten 96.1 0.0029 1E-07 63.0 3.5 32 242-273 8-39 (340)
247 1qde_A EIF4A, translation init 96.1 0.028 9.5E-07 51.4 9.9 58 204-264 14-75 (224)
248 1r8s_A ADP-ribosylation factor 96.1 0.051 1.7E-06 46.5 11.0 22 243-264 2-23 (164)
249 4dsu_A GTPase KRAS, isoform 2B 96.0 0.02 6.8E-07 50.3 8.5 24 242-265 5-28 (189)
250 3a00_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 56.3 3.5 25 242-266 2-26 (186)
251 2efe_B Small GTP-binding prote 96.0 0.017 5.9E-07 50.4 8.0 23 242-264 13-35 (181)
252 1c1y_A RAS-related protein RAP 96.0 0.025 8.6E-07 48.4 8.8 23 242-264 4-26 (167)
253 2a9k_A RAS-related protein RAL 96.0 0.031 1.1E-06 48.8 9.6 23 242-264 19-41 (187)
254 1lvg_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 57.1 3.4 26 241-266 4-29 (198)
255 3exa_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 61.5 3.7 33 242-274 4-36 (322)
256 3t1o_A Gliding protein MGLA; G 96.0 0.034 1.2E-06 49.0 9.8 24 242-265 15-38 (198)
257 3asz_A Uridine kinase; cytidin 96.0 0.003 1E-07 57.6 2.8 26 241-266 6-31 (211)
258 2xau_A PRE-mRNA-splicing facto 96.0 0.019 6.6E-07 63.3 9.8 24 241-264 109-132 (773)
259 1t6n_A Probable ATP-dependent 96.0 0.026 8.9E-07 51.5 9.2 59 202-263 12-73 (220)
260 1r2q_A RAS-related protein RAB 96.0 0.014 4.7E-07 50.2 6.9 23 242-264 7-29 (170)
261 1htw_A HI0065; nucleotide-bind 95.9 0.0054 1.8E-07 54.2 4.2 28 238-265 30-57 (158)
262 2bov_A RAla, RAS-related prote 95.9 0.036 1.2E-06 49.5 9.8 23 242-264 15-37 (206)
263 2v9p_A Replication protein E1; 95.9 0.0046 1.6E-07 60.7 4.0 33 237-269 122-154 (305)
264 3dm5_A SRP54, signal recogniti 95.9 0.0078 2.7E-07 62.0 5.8 61 213-274 73-136 (443)
265 3bc1_A RAS-related protein RAB 95.9 0.025 8.5E-07 49.7 8.5 23 242-264 12-34 (195)
266 2oil_A CATX-8, RAS-related pro 95.9 0.016 5.3E-07 51.6 7.2 23 242-264 26-48 (193)
267 1z0f_A RAB14, member RAS oncog 95.9 0.022 7.4E-07 49.4 7.9 25 241-265 15-39 (179)
268 1vma_A Cell division protein F 95.9 0.0085 2.9E-07 58.8 5.7 59 215-274 79-140 (306)
269 1ex7_A Guanylate kinase; subst 95.9 0.0056 1.9E-07 55.7 4.0 61 367-431 116-183 (186)
270 2og2_A Putative signal recogni 95.9 0.0067 2.3E-07 60.9 4.9 53 213-265 127-181 (359)
271 1x6v_B Bifunctional 3'-phospho 95.8 0.0068 2.3E-07 65.1 5.2 34 241-274 52-88 (630)
272 2atv_A RERG, RAS-like estrogen 95.8 0.029 1E-06 50.0 8.8 24 241-264 28-51 (196)
273 3q72_A GTP-binding protein RAD 95.8 0.013 4.5E-07 50.4 6.2 21 243-263 4-24 (166)
274 3thx_B DNA mismatch repair pro 95.8 0.011 3.7E-07 66.4 6.9 100 240-356 672-800 (918)
275 2yhs_A FTSY, cell division pro 95.8 0.0074 2.5E-07 63.0 5.2 25 241-265 293-317 (503)
276 1z6g_A Guanylate kinase; struc 95.8 0.0052 1.8E-07 56.9 3.6 25 241-265 23-47 (218)
277 1znw_A Guanylate kinase, GMP k 95.8 0.0055 1.9E-07 56.0 3.8 26 241-266 20-45 (207)
278 3thx_A DNA mismatch repair pro 95.8 0.018 6.2E-07 64.7 8.6 23 241-263 662-684 (934)
279 1zu4_A FTSY; GTPase, signal re 95.8 0.012 4.2E-07 58.0 6.4 61 215-275 74-142 (320)
280 2j37_W Signal recognition part 95.8 0.021 7.2E-07 59.8 8.5 34 241-274 101-137 (504)
281 1odf_A YGR205W, hypothetical 3 95.7 0.0087 3E-07 58.2 5.0 26 241-266 31-56 (290)
282 2eyu_A Twitching motility prot 95.7 0.0071 2.4E-07 57.9 4.3 26 240-265 24-49 (261)
283 2gk6_A Regulator of nonsense t 95.7 0.0085 2.9E-07 64.5 5.4 24 242-265 196-219 (624)
284 1wb9_A DNA mismatch repair pro 95.7 0.022 7.5E-07 63.0 8.8 24 241-264 607-630 (800)
285 3con_A GTPase NRAS; structural 95.7 0.025 8.5E-07 50.0 7.6 24 242-265 22-45 (190)
286 1cr0_A DNA primase/helicase; R 95.7 0.0058 2E-07 59.0 3.7 37 237-273 31-71 (296)
287 3ney_A 55 kDa erythrocyte memb 95.7 0.0073 2.5E-07 55.4 4.1 26 241-266 19-44 (197)
288 1sky_E F1-ATPase, F1-ATP synth 95.7 0.077 2.6E-06 54.9 12.1 23 243-265 153-175 (473)
289 3eph_A TRNA isopentenyltransfe 95.7 0.0059 2E-07 62.1 3.6 33 241-273 2-34 (409)
290 1x3s_A RAS-related protein RAB 95.6 0.033 1.1E-06 49.2 8.2 23 242-264 16-38 (195)
291 4eaq_A DTMP kinase, thymidylat 95.6 0.0089 3E-07 55.9 4.6 31 242-272 27-59 (229)
292 3dz8_A RAS-related protein RAB 95.6 0.02 6.8E-07 50.9 6.7 23 243-265 25-47 (191)
293 1hv8_A Putative ATP-dependent 95.6 0.1 3.6E-06 50.7 12.5 58 204-264 6-67 (367)
294 1vec_A ATP-dependent RNA helic 95.6 0.037 1.3E-06 49.8 8.5 19 241-259 40-58 (206)
295 3gmt_A Adenylate kinase; ssgci 95.6 0.0072 2.4E-07 56.9 3.7 30 243-272 10-39 (230)
296 2nzj_A GTP-binding protein REM 95.6 0.023 8E-07 49.1 6.9 23 242-264 5-27 (175)
297 3bh0_A DNAB-like replicative h 95.6 0.021 7.1E-07 56.0 7.2 39 237-275 64-105 (315)
298 3kkq_A RAS-related protein M-R 95.5 0.032 1.1E-06 48.9 7.7 23 242-264 19-41 (183)
299 1s96_A Guanylate kinase, GMP k 95.5 0.0083 2.8E-07 55.8 3.9 28 239-266 14-41 (219)
300 2ewv_A Twitching motility prot 95.5 0.0069 2.4E-07 61.0 3.5 28 238-265 133-160 (372)
301 2erx_A GTP-binding protein DI- 95.5 0.021 7.3E-07 49.1 6.2 21 243-263 5-25 (172)
302 2b6h_A ADP-ribosylation factor 95.5 0.044 1.5E-06 48.9 8.5 24 240-263 28-51 (192)
303 3hdt_A Putative kinase; struct 95.5 0.0075 2.6E-07 56.4 3.4 30 242-271 15-44 (223)
304 1j8m_F SRP54, signal recogniti 95.5 0.04 1.4E-06 53.7 8.7 35 241-275 98-135 (297)
305 1p9r_A General secretion pathw 95.4 0.02 6.8E-07 58.6 6.7 24 243-266 169-192 (418)
306 2p5s_A RAS and EF-hand domain 95.4 0.031 1.1E-06 50.0 7.3 24 241-264 28-51 (199)
307 1zbd_A Rabphilin-3A; G protein 95.4 0.033 1.1E-06 49.8 7.4 24 241-264 8-31 (203)
308 1xx6_A Thymidine kinase; NESG, 95.4 0.022 7.6E-07 51.8 6.2 63 242-304 9-93 (191)
309 1gtv_A TMK, thymidylate kinase 95.4 0.0033 1.1E-07 57.3 0.6 24 243-266 2-25 (214)
310 2fn4_A P23, RAS-related protei 95.4 0.042 1.4E-06 47.6 7.8 23 242-264 10-32 (181)
311 2h57_A ADP-ribosylation factor 95.3 0.024 8.3E-07 50.3 6.2 24 242-265 22-45 (190)
312 2i3b_A HCR-ntpase, human cance 95.3 0.009 3.1E-07 54.3 3.4 23 243-265 3-25 (189)
313 2jeo_A Uridine-cytidine kinase 95.3 0.0099 3.4E-07 55.8 3.8 27 242-268 26-52 (245)
314 1fzq_A ADP-ribosylation factor 95.3 0.089 3.1E-06 46.3 9.9 24 241-264 16-39 (181)
315 1c9k_A COBU, adenosylcobinamid 95.3 0.0092 3.2E-07 54.0 3.3 32 244-276 2-33 (180)
316 2hup_A RAS-related protein RAB 95.3 0.043 1.5E-06 49.4 7.9 23 242-264 30-52 (201)
317 2y8e_A RAB-protein 6, GH09086P 95.3 0.018 6.2E-07 50.0 5.2 23 242-264 15-37 (179)
318 1zd9_A ADP-ribosylation factor 95.3 0.064 2.2E-06 47.5 8.9 23 242-264 23-45 (188)
319 2wjy_A Regulator of nonsense t 95.3 0.015 5E-07 64.5 5.5 39 211-265 357-395 (800)
320 2fg5_A RAB-22B, RAS-related pr 95.2 0.025 8.6E-07 50.4 6.0 23 242-264 24-46 (192)
321 3clv_A RAB5 protein, putative; 95.2 0.043 1.5E-06 48.4 7.6 24 241-264 7-30 (208)
322 3q85_A GTP-binding protein REM 95.2 0.038 1.3E-06 47.5 7.0 21 243-263 4-24 (169)
323 4f4c_A Multidrug resistance pr 95.2 0.043 1.5E-06 64.1 9.4 27 240-266 443-469 (1321)
324 2bme_A RAB4A, RAS-related prot 95.2 0.023 8E-07 49.8 5.6 23 242-264 11-33 (186)
325 3e70_C DPA, signal recognition 95.2 0.019 6.3E-07 56.9 5.4 26 240-265 128-153 (328)
326 3lnc_A Guanylate kinase, GMP k 95.2 0.0064 2.2E-07 56.5 1.9 26 241-266 27-53 (231)
327 3tqf_A HPR(Ser) kinase; transf 95.2 0.01 3.6E-07 53.3 3.1 28 241-269 16-43 (181)
328 2oap_1 GSPE-2, type II secreti 95.1 0.0072 2.5E-07 63.5 2.4 62 241-302 260-343 (511)
329 1np6_A Molybdopterin-guanine d 95.1 0.013 4.5E-07 52.5 3.8 27 239-265 4-30 (174)
330 2f7s_A C25KG, RAS-related prot 95.1 0.053 1.8E-06 49.1 8.0 23 242-264 26-48 (217)
331 3pey_A ATP-dependent RNA helic 95.1 0.11 3.6E-06 51.2 10.7 56 204-259 5-62 (395)
332 1z06_A RAS-related protein RAB 95.1 0.056 1.9E-06 47.8 7.8 23 242-264 21-43 (189)
333 2va8_A SSO2462, SKI2-type heli 95.1 0.066 2.3E-06 58.2 9.9 55 204-259 8-64 (715)
334 2g6b_A RAS-related protein RAB 95.1 0.039 1.3E-06 48.0 6.6 23 242-264 11-33 (180)
335 1a7j_A Phosphoribulokinase; tr 95.1 0.01 3.5E-07 57.6 3.0 37 242-278 6-45 (290)
336 3ice_A Transcription terminati 95.1 0.038 1.3E-06 55.9 7.2 25 241-265 174-198 (422)
337 1zj6_A ADP-ribosylation factor 95.0 0.099 3.4E-06 46.0 9.4 23 241-263 16-38 (187)
338 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.024 8.1E-07 49.3 5.1 23 242-264 8-30 (177)
339 3tqc_A Pantothenate kinase; bi 95.0 0.026 9.1E-07 55.6 5.9 25 242-266 93-117 (321)
340 3oes_A GTPase rhebl1; small GT 95.0 0.033 1.1E-06 50.0 6.1 25 241-265 24-48 (201)
341 2axn_A 6-phosphofructo-2-kinas 95.0 0.016 5.3E-07 61.1 4.4 33 241-273 35-70 (520)
342 1ewq_A DNA mismatch repair pro 95.0 0.07 2.4E-06 58.7 9.7 25 241-265 576-600 (765)
343 2hxs_A RAB-26, RAS-related pro 95.0 0.034 1.2E-06 48.3 6.0 23 242-264 7-29 (178)
344 1upt_A ARL1, ADP-ribosylation 95.0 0.075 2.6E-06 45.6 8.2 24 241-264 7-30 (171)
345 4dkx_A RAS-related protein RAB 94.9 0.046 1.6E-06 50.5 7.0 21 243-263 15-35 (216)
346 2ged_A SR-beta, signal recogni 94.9 0.012 4.1E-07 52.2 2.9 27 239-265 46-72 (193)
347 2o8b_B DNA mismatch repair pro 94.9 0.028 9.5E-07 63.8 6.5 22 241-262 789-810 (1022)
348 1w36_D RECD, exodeoxyribonucle 94.9 0.019 6.5E-07 61.6 4.9 25 241-265 164-188 (608)
349 2gf9_A RAS-related protein RAB 94.9 0.028 9.5E-07 49.8 5.2 24 242-265 23-46 (189)
350 2zj8_A DNA helicase, putative 94.9 0.086 3E-06 57.4 10.1 18 241-258 39-56 (720)
351 1rj9_A FTSY, signal recognitio 94.9 0.018 6E-07 56.4 4.1 25 241-265 102-126 (304)
352 2il1_A RAB12; G-protein, GDP, 94.8 0.042 1.4E-06 49.0 6.2 22 242-263 27-48 (192)
353 2gf0_A GTP-binding protein DI- 94.8 0.044 1.5E-06 48.6 6.3 23 242-264 9-31 (199)
354 3kta_A Chromosome segregation 94.8 0.017 6E-07 51.1 3.6 24 243-266 28-51 (182)
355 2bcg_Y Protein YP2, GTP-bindin 94.8 0.028 9.6E-07 50.5 5.1 23 242-264 9-31 (206)
356 2a5j_A RAS-related protein RAB 94.8 0.034 1.2E-06 49.4 5.6 22 243-264 23-44 (191)
357 3fe2_A Probable ATP-dependent 94.8 0.053 1.8E-06 50.4 7.1 52 204-258 29-83 (242)
358 2fu5_C RAS-related protein RAB 94.8 0.02 6.9E-07 50.2 4.0 24 241-264 8-31 (183)
359 1xjc_A MOBB protein homolog; s 94.8 0.028 9.7E-07 50.2 4.9 32 242-273 5-39 (169)
360 2xzl_A ATP-dependent helicase 94.8 0.02 7E-07 63.4 4.8 32 242-273 376-411 (802)
361 4f4c_A Multidrug resistance pr 94.8 0.028 9.4E-07 65.7 6.1 25 241-265 1105-1129(1321)
362 2q6t_A DNAB replication FORK h 94.7 0.027 9.3E-07 57.9 5.4 38 237-274 196-237 (444)
363 3aez_A Pantothenate kinase; tr 94.7 0.02 6.7E-07 56.3 4.0 26 241-266 90-115 (312)
364 1m8p_A Sulfate adenylyltransfe 94.7 0.021 7.2E-07 60.8 4.5 33 242-274 397-433 (573)
365 2ocp_A DGK, deoxyguanosine kin 94.7 0.02 6.9E-07 53.4 3.9 25 242-266 3-27 (241)
366 2z0m_A 337AA long hypothetical 94.7 0.2 6.7E-06 48.1 11.1 31 241-271 31-61 (337)
367 4i1u_A Dephospho-COA kinase; s 94.7 0.018 6.2E-07 53.3 3.4 31 243-274 11-41 (210)
368 1m2o_B GTP-binding protein SAR 94.6 0.062 2.1E-06 47.9 6.9 22 242-263 24-45 (190)
369 2ew1_A RAS-related protein RAB 94.6 0.036 1.2E-06 50.2 5.4 23 242-264 27-49 (201)
370 2xxa_A Signal recognition part 94.6 0.03 1E-06 57.5 5.4 37 240-276 99-139 (433)
371 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.024 8.1E-07 56.1 4.4 63 241-303 171-251 (330)
372 4edh_A DTMP kinase, thymidylat 94.6 0.02 6.8E-07 53.0 3.6 32 242-273 7-41 (213)
373 1sq5_A Pantothenate kinase; P- 94.5 0.018 6.1E-07 56.2 3.3 25 242-266 81-105 (308)
374 2cbz_A Multidrug resistance-as 94.5 0.013 4.3E-07 55.2 2.1 26 240-265 30-55 (237)
375 3tif_A Uncharacterized ABC tra 94.5 0.013 4.4E-07 55.1 2.1 27 241-267 31-57 (235)
376 3v9p_A DTMP kinase, thymidylat 94.5 0.028 9.5E-07 52.7 4.3 30 243-272 27-63 (227)
377 3t5g_A GTP-binding protein RHE 94.5 0.04 1.4E-06 48.2 5.1 23 242-264 7-29 (181)
378 3b85_A Phosphate starvation-in 94.5 0.019 6.4E-07 53.0 3.0 24 241-264 22-45 (208)
379 3cph_A RAS-related protein SEC 94.5 0.063 2.2E-06 48.2 6.6 24 241-264 20-43 (213)
380 2ffh_A Protein (FFH); SRP54, s 94.4 0.048 1.7E-06 55.8 6.4 35 240-274 97-134 (425)
381 2pcj_A ABC transporter, lipopr 94.4 0.012 4.1E-07 54.9 1.6 26 241-266 30-55 (224)
382 1p5z_B DCK, deoxycytidine kina 94.4 0.0097 3.3E-07 56.5 0.9 28 242-269 25-53 (263)
383 2fh5_B SR-beta, signal recogni 94.4 0.051 1.7E-06 49.1 5.8 25 241-265 7-31 (214)
384 2gza_A Type IV secretion syste 94.4 0.021 7.2E-07 57.1 3.5 26 241-266 175-200 (361)
385 2wsm_A Hydrogenase expression/ 94.4 0.046 1.6E-06 49.8 5.4 26 241-266 30-55 (221)
386 1z2a_A RAS-related protein RAB 94.4 0.023 7.7E-07 48.8 3.2 24 241-264 5-28 (168)
387 2onk_A Molybdate/tungstate ABC 94.3 0.018 6.1E-07 54.4 2.6 28 238-266 22-49 (240)
388 2dyk_A GTP-binding protein; GT 94.3 0.024 8.2E-07 48.3 3.3 22 243-264 3-24 (161)
389 2f9l_A RAB11B, member RAS onco 94.3 0.022 7.6E-07 51.1 3.2 23 242-264 6-28 (199)
390 2h17_A ADP-ribosylation factor 94.3 0.068 2.3E-06 46.9 6.4 23 242-264 22-44 (181)
391 4a1f_A DNAB helicase, replicat 94.3 0.038 1.3E-06 54.8 5.1 38 237-274 42-82 (338)
392 1oix_A RAS-related protein RAB 94.2 0.022 7.5E-07 51.0 2.9 23 243-265 31-53 (191)
393 1b0u_A Histidine permease; ABC 94.2 0.017 5.8E-07 55.2 2.2 27 241-267 32-58 (262)
394 1bif_A 6-phosphofructo-2-kinas 94.2 0.015 5.1E-07 60.3 1.9 26 241-266 39-64 (469)
395 3sop_A Neuronal-specific septi 94.2 0.023 7.8E-07 54.6 3.0 24 243-266 4-27 (270)
396 1lw7_A Transcriptional regulat 94.2 0.021 7.1E-07 57.1 2.9 28 241-268 170-197 (365)
397 1mv5_A LMRA, multidrug resista 94.2 0.016 5.6E-07 54.6 2.0 25 241-265 28-52 (243)
398 2pze_A Cystic fibrosis transme 94.1 0.016 5.5E-07 54.2 1.8 26 241-266 34-59 (229)
399 1f6b_A SAR1; gtpases, N-termin 94.1 0.052 1.8E-06 48.8 5.2 22 242-263 26-47 (198)
400 1sgw_A Putative ABC transporte 94.1 0.016 5.4E-07 53.8 1.7 26 241-266 35-60 (214)
401 2www_A Methylmalonic aciduria 94.1 0.1 3.4E-06 51.9 7.6 24 242-265 75-98 (349)
402 3llu_A RAS-related GTP-binding 94.0 0.11 3.9E-06 46.2 7.3 25 241-265 20-44 (196)
403 2olj_A Amino acid ABC transpor 94.0 0.019 6.5E-07 55.0 2.2 27 241-267 50-76 (263)
404 3tmk_A Thymidylate kinase; pho 94.0 0.038 1.3E-06 51.3 4.2 29 242-270 6-34 (216)
405 3cbq_A GTP-binding protein REM 94.0 0.073 2.5E-06 47.7 6.0 22 242-263 24-45 (195)
406 2ghi_A Transport protein; mult 94.0 0.019 6.4E-07 54.8 2.1 26 240-265 45-70 (260)
407 1g6h_A High-affinity branched- 94.0 0.017 5.7E-07 55.0 1.8 26 241-266 33-58 (257)
408 2ixe_A Antigen peptide transpo 94.0 0.019 6.5E-07 55.1 2.1 26 241-266 45-70 (271)
409 2zu0_C Probable ATP-dependent 94.0 0.026 8.9E-07 54.1 3.0 24 241-264 46-69 (267)
410 3bgw_A DNAB-like replicative h 93.9 0.044 1.5E-06 56.4 4.8 38 237-274 193-233 (444)
411 2ff7_A Alpha-hemolysin translo 93.9 0.018 6.2E-07 54.5 1.8 26 241-266 35-60 (247)
412 2d2e_A SUFC protein; ABC-ATPas 93.9 0.024 8.3E-07 53.7 2.6 24 241-264 29-52 (250)
413 2qi9_C Vitamin B12 import ATP- 93.9 0.019 6.5E-07 54.5 1.8 28 241-268 26-53 (249)
414 3fvq_A Fe(3+) IONS import ATP- 93.9 0.023 7.8E-07 57.0 2.4 25 241-265 30-54 (359)
415 3iuy_A Probable ATP-dependent 93.8 0.34 1.2E-05 44.2 10.3 18 241-258 57-74 (228)
416 1ls1_A Signal recognition part 93.8 0.088 3E-06 51.1 6.5 35 241-275 98-135 (295)
417 1ji0_A ABC transporter; ATP bi 93.8 0.02 6.7E-07 54.0 1.8 27 241-267 32-58 (240)
418 3gfo_A Cobalt import ATP-bindi 93.8 0.02 6.8E-07 55.2 1.8 25 241-265 34-58 (275)
419 1vpl_A ABC transporter, ATP-bi 93.8 0.023 7.7E-07 54.2 2.2 26 241-266 41-66 (256)
420 1g8f_A Sulfate adenylyltransfe 93.8 0.043 1.5E-06 57.5 4.5 26 242-267 396-421 (511)
421 1z08_A RAS-related protein RAB 93.8 0.035 1.2E-06 47.7 3.3 23 242-264 7-29 (170)
422 3eiq_A Eukaryotic initiation f 93.8 0.41 1.4E-05 47.4 11.6 52 204-258 40-94 (414)
423 2wji_A Ferrous iron transport 93.7 0.033 1.1E-06 48.3 3.0 23 242-264 4-26 (165)
424 2yz2_A Putative ABC transporte 93.7 0.023 8E-07 54.3 2.1 25 241-265 33-57 (266)
425 2it1_A 362AA long hypothetical 93.7 0.03 1E-06 56.1 3.0 25 241-265 29-53 (362)
426 1ky3_A GTP-binding protein YPT 93.7 0.037 1.3E-06 48.1 3.2 25 241-265 8-32 (182)
427 1g16_A RAS-related protein SEC 93.7 0.033 1.1E-06 47.8 2.9 23 242-264 4-26 (170)
428 1f2t_A RAD50 ABC-ATPase; DNA d 93.7 0.033 1.1E-06 48.4 2.8 23 243-265 25-47 (149)
429 3lv8_A DTMP kinase, thymidylat 93.6 0.038 1.3E-06 52.0 3.5 25 241-265 27-51 (236)
430 2yyz_A Sugar ABC transporter, 93.6 0.031 1.1E-06 56.0 2.9 25 241-265 29-53 (359)
431 3p32_A Probable GTPase RV1496/ 93.6 0.057 1.9E-06 53.7 4.9 33 241-273 79-114 (355)
432 2nq2_C Hypothetical ABC transp 93.6 0.022 7.5E-07 54.2 1.8 26 241-266 31-56 (253)
433 2ihy_A ABC transporter, ATP-bi 93.6 0.022 7.6E-07 55.0 1.8 26 241-266 47-72 (279)
434 3rlf_A Maltose/maltodextrin im 93.6 0.03 1E-06 56.6 2.8 25 241-265 29-53 (381)
435 1tq4_A IIGP1, interferon-induc 93.6 0.061 2.1E-06 54.9 5.1 23 243-265 71-93 (413)
436 1v43_A Sugar-binding transport 93.6 0.032 1.1E-06 56.2 3.0 25 241-265 37-61 (372)
437 3cr8_A Sulfate adenylyltranfer 93.6 0.025 8.7E-07 59.9 2.3 26 241-266 369-394 (552)
438 2zej_A Dardarin, leucine-rich 93.6 0.031 1.1E-06 49.5 2.5 21 243-263 4-24 (184)
439 2orv_A Thymidine kinase; TP4A 93.6 0.45 1.6E-05 44.5 10.6 62 242-304 20-102 (234)
440 4g1u_C Hemin import ATP-bindin 93.6 0.022 7.6E-07 54.6 1.7 26 241-266 37-62 (266)
441 1z47_A CYSA, putative ABC-tran 93.5 0.029 9.9E-07 56.1 2.6 25 241-265 41-65 (355)
442 1tf7_A KAIC; homohexamer, hexa 93.5 0.034 1.2E-06 58.4 3.1 29 237-265 277-305 (525)
443 2lkc_A Translation initiation 93.5 0.045 1.6E-06 47.5 3.5 24 241-264 8-31 (178)
444 3b1v_A Ferrous iron uptake tra 93.4 0.12 4.2E-06 49.4 6.8 23 242-264 4-26 (272)
445 2f1r_A Molybdopterin-guanine d 93.4 0.021 7.2E-07 51.0 1.2 25 242-266 3-27 (171)
446 1q57_A DNA primase/helicase; d 93.4 0.046 1.6E-06 57.0 3.9 38 237-274 238-279 (503)
447 2obl_A ESCN; ATPase, hydrolase 93.4 0.06 2.1E-06 53.6 4.6 29 242-270 72-100 (347)
448 2wjg_A FEOB, ferrous iron tran 93.4 0.036 1.2E-06 48.8 2.6 23 242-264 8-30 (188)
449 3iby_A Ferrous iron transport 93.4 0.098 3.3E-06 49.6 5.9 22 243-264 3-24 (256)
450 1g29_1 MALK, maltose transport 93.3 0.033 1.1E-06 56.1 2.6 25 241-265 29-53 (372)
451 1tf7_A KAIC; homohexamer, hexa 93.3 0.036 1.2E-06 58.2 3.0 29 237-265 35-65 (525)
452 1svi_A GTP-binding protein YSX 93.3 0.046 1.6E-06 48.4 3.2 24 241-264 23-46 (195)
453 4tmk_A Protein (thymidylate ki 93.3 0.043 1.5E-06 50.8 3.1 24 242-265 4-27 (213)
454 3ld9_A DTMP kinase, thymidylat 93.3 0.052 1.8E-06 50.6 3.6 26 242-267 22-47 (223)
455 4djt_A GTP-binding nuclear pro 93.2 0.026 8.8E-07 51.3 1.4 23 241-263 11-33 (218)
456 2pjz_A Hypothetical protein ST 93.2 0.032 1.1E-06 53.3 2.1 25 241-265 30-54 (263)
457 3d31_A Sulfate/molybdate ABC t 93.1 0.028 9.5E-07 56.1 1.7 25 241-265 26-50 (348)
458 2zpa_A Uncharacterized protein 93.1 0.35 1.2E-05 52.2 10.2 61 243-304 194-267 (671)
459 2bbs_A Cystic fibrosis transme 93.1 0.03 1E-06 54.4 1.8 25 241-265 64-88 (290)
460 2dpy_A FLII, flagellum-specifi 93.1 0.082 2.8E-06 54.3 5.2 29 241-269 157-185 (438)
461 3l0o_A Transcription terminati 93.1 0.17 5.7E-06 51.3 7.2 23 243-265 177-199 (427)
462 2hf9_A Probable hydrogenase ni 93.1 0.11 3.8E-06 47.3 5.6 25 241-265 38-62 (226)
463 2qm8_A GTPase/ATPase; G protei 93.1 0.058 2E-06 53.4 3.9 25 241-265 55-79 (337)
464 2j1l_A RHO-related GTP-binding 93.1 0.05 1.7E-06 49.5 3.2 22 242-263 35-56 (214)
465 1m7b_A RND3/RHOE small GTP-bin 93.0 0.047 1.6E-06 48.1 2.9 24 241-264 7-30 (184)
466 4ag6_A VIRB4 ATPase, type IV s 93.0 0.095 3.3E-06 52.6 5.4 34 241-274 35-71 (392)
467 1yrb_A ATP(GTP)binding protein 92.9 0.088 3E-06 49.2 4.8 33 242-274 15-49 (262)
468 1moz_A ARL1, ADP-ribosylation 92.9 0.054 1.9E-06 47.3 3.1 24 240-263 17-40 (183)
469 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.049 1.7E-06 56.4 3.2 28 238-265 135-162 (460)
470 4hlc_A DTMP kinase, thymidylat 92.9 0.089 3E-06 48.2 4.6 29 244-272 5-35 (205)
471 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.057 2E-06 47.1 3.2 23 242-264 6-28 (186)
472 3tw8_B RAS-related protein RAB 92.9 0.052 1.8E-06 47.0 2.9 22 242-263 10-31 (181)
473 3gd7_A Fusion complex of cysti 92.9 0.043 1.5E-06 55.6 2.7 25 241-265 47-71 (390)
474 2gj8_A MNME, tRNA modification 92.8 0.044 1.5E-06 48.1 2.4 23 242-264 5-27 (172)
475 1ko7_A HPR kinase/phosphatase; 92.8 0.067 2.3E-06 52.5 3.9 29 241-270 144-172 (314)
476 2gks_A Bifunctional SAT/APS ki 92.8 0.082 2.8E-06 55.9 4.7 32 242-273 373-407 (546)
477 3t34_A Dynamin-related protein 92.7 0.5 1.7E-05 46.7 10.2 21 243-263 36-56 (360)
478 3gj0_A GTP-binding nuclear pro 92.7 0.057 2E-06 49.1 3.0 23 242-264 16-39 (221)
479 1pui_A ENGB, probable GTP-bind 92.7 0.03 1E-06 50.4 1.1 25 241-265 26-50 (210)
480 1oxx_K GLCV, glucose, ABC tran 92.7 0.028 9.5E-07 56.2 0.9 25 241-265 31-55 (353)
481 3k53_A Ferrous iron transport 92.7 0.05 1.7E-06 51.8 2.6 23 242-264 4-26 (271)
482 3pqc_A Probable GTP-binding pr 92.6 0.055 1.9E-06 47.6 2.7 24 241-264 23-46 (195)
483 3bwd_D RAC-like GTP-binding pr 92.6 0.065 2.2E-06 46.6 3.2 24 241-264 8-31 (182)
484 2cxx_A Probable GTP-binding pr 92.6 0.043 1.5E-06 48.2 2.0 22 243-264 3-24 (190)
485 3c5c_A RAS-like protein 12; GD 92.6 0.066 2.3E-06 47.5 3.2 22 243-264 23-44 (187)
486 3hjn_A DTMP kinase, thymidylat 92.6 0.11 3.8E-06 47.2 4.7 30 244-273 3-35 (197)
487 1vg8_A RAS-related protein RAB 92.6 0.066 2.3E-06 47.8 3.2 25 241-265 8-32 (207)
488 2iwr_A Centaurin gamma 1; ANK 92.5 0.051 1.7E-06 47.3 2.4 23 242-264 8-30 (178)
489 3ihw_A Centg3; RAS, centaurin, 92.5 0.069 2.4E-06 47.3 3.3 22 243-264 22-43 (184)
490 1knx_A Probable HPR(Ser) kinas 92.5 0.051 1.8E-06 53.3 2.6 29 241-270 147-175 (312)
491 1ksh_A ARF-like protein 2; sma 92.5 0.052 1.8E-06 47.7 2.4 24 241-264 18-41 (186)
492 2vp4_A Deoxynucleoside kinase; 92.4 0.07 2.4E-06 49.5 3.2 29 243-272 22-50 (230)
493 3nh6_A ATP-binding cassette SU 92.3 0.031 1.1E-06 54.7 0.8 28 239-266 78-105 (306)
494 3reg_A RHO-like small GTPase; 92.3 0.073 2.5E-06 47.2 3.2 24 242-265 24-47 (194)
495 2qag_B Septin-6, protein NEDD5 92.3 0.072 2.5E-06 54.5 3.4 22 244-265 45-66 (427)
496 3tui_C Methionine import ATP-b 92.2 0.066 2.2E-06 53.7 3.0 25 241-265 54-78 (366)
497 3iev_A GTP-binding protein ERA 92.2 0.19 6.6E-06 48.8 6.3 24 241-264 9-33 (308)
498 3r7w_A Gtpase1, GTP-binding pr 92.2 0.21 7.3E-06 48.4 6.7 24 241-264 3-26 (307)
499 2db3_A ATP-dependent RNA helic 92.1 0.52 1.8E-05 47.8 9.7 51 204-257 56-109 (434)
500 1fx0_A ATP synthase alpha chai 92.1 0.29 1E-05 50.9 7.8 61 243-303 165-231 (507)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-40 Score=333.48 Aligned_cols=185 Identities=30% Similarity=0.397 Sum_probs=163.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
+...++.+|..+ ..||||||||||+++. .+....++.+.....++++||+.|||+... .+++||+|||+|+
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~--~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd 298 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS--TRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLD 298 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT--SCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSS
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhcc--CCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChh
Confidence 356788888655 5799999999999975 332233333345567899999999999765 6799999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.||||++||||||.+|+++.|+.++|.+|++.++...
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM 335 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998754
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=331.01 Aligned_cols=186 Identities=26% Similarity=0.318 Sum_probs=164.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++|+|.+++|++|.+.+..++.+|++|.++|++||+|||||||||||||++|+|+|++++.+++.++.+++.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+ ..||||||||||+++. .|.......+.....++++||+.|||.... ++++||+|||++
T Consensus 256 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrp 331 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT--KRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKI 331 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC--CCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCS
T ss_pred cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc--cCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCCh
Confidence 346678888554 5799999999999876 333333333445677899999999998654 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.|||||+||||||.+|+|++|+.++|++|++.++...
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998754
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=328.94 Aligned_cols=186 Identities=27% Similarity=0.367 Sum_probs=163.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+ ..||||||||||+++. .|.......+.....++++||+.|||+.+. ++++||+|||+|
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~--~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp 330 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG--RRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRP 330 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC--CCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESST
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeeccccccc--ccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCc
Confidence 345677777554 5799999999999875 332233333445567899999999999765 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.|||||+||||||.+|+|++|+.++|.+|++.++...
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS
T ss_pred hhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998754
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=329.36 Aligned_cols=204 Identities=24% Similarity=0.308 Sum_probs=169.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.++.+|++|+|.+++|++|.+.+..|+.+|+.|.++|+++|+|||||||||||||++|+|+|++++.+++.++++++.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 556799999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+ ..||||||||||+++.. |.............++++||+.|||+.+. ++++||+|||+|
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~--R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTK--RFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCC--CSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhc--cCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 346678888654 47999999999998752 22222222334567889999999999765 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC---CCchHHHHHhhccccCchh
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS---HSMFDEIEELIKEVEVTPA 410 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~---~~l~~ei~~ll~~~~~tpa 410 (455)
+.|||||+||||||.+|+|++|+.++|.+|++.++.... ....+++++...+ ++.|
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G--~sGA 389 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDE--FNGA 389 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSS--CCHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCC--CCHH
Confidence 999999999999999999999999999999999987542 2223444444433 4555
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=326.03 Aligned_cols=186 Identities=26% Similarity=0.376 Sum_probs=163.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++++|.+++|++|.+.+..|+.+|++|.++|++||+|+|||||||||||++|+|+|++++.+++.++++++.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 345699999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+ ..||||||||+|+++. .|.......+.....++++||+.|||+.+. .+++||+|||++
T Consensus 246 ~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~--~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~ 321 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--KRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRA 321 (428)
T ss_dssp SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC--SCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCS
T ss_pred ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc--cccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCCh
Confidence 346788888655 5799999999999876 333333333445678899999999999775 569999999999
Q ss_pred CCCCccccCCCceeEEEEeC-CCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMS-YLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~-~p~~~~~~~L~~~~l~~~ 390 (455)
+.|||||+||||||.+|+|| +|+.++|..|++.++...
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999996 899999999999998654
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=326.13 Aligned_cols=186 Identities=26% Similarity=0.317 Sum_probs=163.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.+..+|++|+|.+++|++|.+.+..++.+|+.|.++|+++|+|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 445799999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|..+ ..||||||||+|.++. .|.....+.......+++.+|+.|||.... ++++||+|||++
T Consensus 283 ~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~--~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrp 358 (467)
T 4b4t_H 283 YVGEGARMVRELFEMARTKKACIIFFDEIDAVGG--ARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRP 358 (467)
T ss_dssp SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB--CCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCT
T ss_pred cCCHHHHHHHHHHHHHHhcCCceEeecccccccc--cccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCc
Confidence 346788888654 5799999999999875 332222323344567889999999998665 679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.|||||+||||||.+|+|+.|+.++|.+|++.++...
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998754
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=5.8e-33 Score=305.66 Aligned_cols=185 Identities=22% Similarity=0.357 Sum_probs=152.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc----
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL---- 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~---- 277 (455)
+..+|++++|.+++|++|.+.+..++.+|+.|.+.|..+++|+|||||||||||++|+|+|++++.+++.++.+++
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred --CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 278 --RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 278 --~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
.++..++++|..+ ..||||||||||+++..+. ...+........++++||+.|||+.+. .+++||+|||+|+
T Consensus 552 vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~--~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARG--GNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSS
T ss_pred cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccC--CCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCch
Confidence 4678899999776 4699999999999986332 222223345668899999999999765 5699999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.||||++||||||.+|++++|+.++|.+|++.++...
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998754
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=2.4e-31 Score=292.81 Aligned_cols=181 Identities=24% Similarity=0.324 Sum_probs=160.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC----
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR---- 278 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~---- 278 (455)
..+|++|+|.+++|++|.+.+..++.+|+.|.++|+.+|+|+|||||||||||+||+++|++++.+++.++++++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999987752
Q ss_pred --ChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 279 --SNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 279 --~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
+...++.+|..+. .||||||||||.+++.+. .. ........+++||..|||+.+. .+++||+|||+++.
T Consensus 280 gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~--~~---~~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KT---HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNS 352 (806)
T ss_dssp THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTT--TC---CCTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccC--CC---CChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhh
Confidence 3567888887664 699999999999976321 11 2234567889999999999775 56999999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
|||||+||||||.+|+++.|+.++|.+|++.++...
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~ 388 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS
T ss_pred cCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998754
No 9
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=244.56 Aligned_cols=186 Identities=22% Similarity=0.351 Sum_probs=157.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc---
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL--- 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~--- 277 (455)
.++.+|++++|.+++|++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 278 ---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 278 ---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
.....++.+|... ..|+||||||||.+...+.. ............++.||..||++... .+++||+|||++
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~--~~~~~~~~~~~~~~~lL~~l~~~~~~--~~v~vi~atn~~ 164 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGG--NIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRP 164 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTT--TTCCSSCSCCHHHHHHHHHHHSSCTT--SSEEEEEEESCG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCC--CcCCcchHHHHHHHHHHHHhhcccCC--CCEEEEEecCCc
Confidence 2345677777654 46899999999998763322 11112233456778899999987543 569999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
+.||++++|||||+..|+++.|+.++|.+|++.++...
T Consensus 165 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 165 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred cccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999998654
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=236.08 Aligned_cols=182 Identities=23% Similarity=0.275 Sum_probs=151.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CCcEEEEeccccC--
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDMELASLR-- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~~~~~~-- 278 (455)
++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 4568999999999999999999999999998875 35677999999999999999999999999 8999999987753
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
+...++.+|... .+++||||||||.+... +... ........+++++..||++... ..+++||+|||++
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~--~~~~---~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~ 159 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS--RSEN---ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIP 159 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCC--SSSC---CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccc--cccc---cchHHHHHHHHHHHHHhccccc-CCCEEEEEecCCc
Confidence 345677777544 57899999999998652 1111 1233456778999999998532 3679999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
+.+|++++| ||+..|+++.|+.++|..+++.++.....
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~ 197 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN 197 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC
Confidence 999999999 99999999999999999999999875543
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=229.79 Aligned_cols=181 Identities=22% Similarity=0.347 Sum_probs=146.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS-- 279 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~-- 279 (455)
+..+|++++|.+++|++|.+.+..++.+++.|+.+|...++|++|+||||||||+|++++|+.++.+++.++...+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 346899999999999999999999999999999999999999999999999999999999999999999998877632
Q ss_pred ----hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 280 ----NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 280 ----~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
...+..+|... ..|+|+|+||+|.+...+... ........++.++..|||.... ..++++++||+|+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-----~~~~~~~~~~~~l~~Lsgg~~~--~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-----ETGASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPD 157 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------------CTTHHHHHHHHHHTCCST--TCEEEEEEESCGG
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-----cchHHHHHHHHHHHhhhccccc--CCEEEEeecCChh
Confidence 24566677653 468999999999876422111 1112345678899999998554 5588999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.||||++||||||.+|++++|+.++|.+|++.++..
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999853
No 12
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=7.9e-27 Score=224.67 Aligned_cols=186 Identities=27% Similarity=0.385 Sum_probs=139.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC---
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS--- 279 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~--- 279 (455)
+.+|++++|.+++|+.|.+.+. ++..++.|...|...++++|||||||||||++|+++|++++.+++.++++.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999988765 588889999999999999999999999999999999999999999999887632
Q ss_pred ---hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC
Q 047029 280 ---NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER 354 (455)
Q Consensus 280 ---~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~ 354 (455)
...++.+|... ..++||||||+|.+...+.... ...........+..+++.+++.... .++++|+|||.++.
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM-SGFSNTEEEQTLNQLLVEMDGMGTT--DHVIVLASTNRADI 157 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC--------------------CHHHHHHHHHHHTCCTT--CCEEEEEEESCGGG
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccc-cCccchhHHHHHHHHHHHhhCcCCC--CCEEEEecCCChhh
Confidence 24556666544 3589999999999865221110 0011233456788899999987443 57899999999999
Q ss_pred CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 355 LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 355 Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
+|++++|+|||+..++++.|+.++|.++++.++.....
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~ 195 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL 195 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999876443
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=4e-27 Score=246.72 Aligned_cols=184 Identities=29% Similarity=0.403 Sum_probs=152.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
...+|++++|.++.|+++.+.+. ++..+..|.++|...++|+||+||||||||++++++|++++.+++.++++++.
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 34689999999999999988775 67889999999999999999999999999999999999999999999988763
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
+...++.+|... ..|+||||||||.+... +.....+.+.....++++||..||++... .+++||+|||+++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~--r~~~~~g~~~~~~~~l~~LL~~ld~~~~~--~~viVIaaTn~~~ 165 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRH--RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPD 165 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------CHHHHHHHHHHHHHHHSCGG--GTEEEEEEESCGG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhh--cccccCcCcHHHHHHHHHHHHHHhccCCC--CCEEEEEecCChh
Confidence 235567777654 47999999999998642 21111222344557889999999987553 5699999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.||++++||||||..|.++.|+.++|.+|++.++...
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~ 202 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK 202 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999888653
No 14
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.9e-26 Score=225.40 Aligned_cols=187 Identities=26% Similarity=0.305 Sum_probs=155.9
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS 279 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~ 279 (455)
..++.+|++++|.++++++|.+.+..++..++.|..+|...++++|||||||||||++|+++|+.++.+++.+++..+..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ------hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 280 ------NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 280 ------~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
...+..++... ..|+||||||+|.+.. .+...........+..+..+++.+++.... .+++||+|||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--~~~~vI~ttn~ 165 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA--KRTDALTGGDREVQRTLMQLLAEMDGFDAR--GDVKIIGATNR 165 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB--CCSSSCCGGGGHHHHHHHHHHHHHHTTCSS--SSEEEEEECSC
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc--cCccccCCccHHHHHHHHHHHHHhhCCCCC--CCEEEEEeCCC
Confidence 23455555433 4679999999999864 222222222334456778888888877543 56999999999
Q ss_pred CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 352 KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 352 ~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
++.+|++++|+|||+..++++.|+.+++.++++.++...
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM 204 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998754
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=4.9e-27 Score=234.78 Aligned_cols=184 Identities=22% Similarity=0.246 Sum_probs=151.1
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC-
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR- 278 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~- 278 (455)
-.++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 355678999999999999999999999999988887 556678999999999999999999999999999999987652
Q ss_pred -----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 279 -----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 279 -----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
....++.+|... ..++||||||||.+...+. . ............++..+|++... ..+++||+|||+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~--~---~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~atn~ 163 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG--E---GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNI 163 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-----------CCTHHHHHHHHHHHGGGGTS-CCCEEEEEEESC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCC--C---CcchHHHHHHHHHHHHhcccccc-CCceEEEEecCC
Confidence 234566666443 4689999999999865221 1 11233456778899999988543 357899999999
Q ss_pred CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 352 KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 352 ~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
++.||++++| ||+..|+++.|+.++|.+|++.++.....
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~ 202 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC 202 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC
Confidence 9999999999 99999999999999999999999876543
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=7.6e-26 Score=218.29 Aligned_cols=184 Identities=26% Similarity=0.413 Sum_probs=147.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
..+.+|++++|.+++|+++.+.+. ++..++.|+++|...++|+||+||||||||++++++|+.++.+++.++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHH-HHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 456799999999999999988665 68888899999999999999999999999999999999999999999987753
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
....++.+|... ..++++||||+|.+... +..............+..++..+|+.... .+++||+|||++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~--~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~vI~~tn~~ 160 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQ--RGAGLGGGHDEREQTLNQMLVEMDGFEGN--EGIIVIAATNRP 160 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCC--CSTTSCCTTCHHHHHHHHHHHHHHTCCSS--SCEEEEEEESCT
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccC--CCCCcCCCchHHHHHHHHHHHHhhCcccC--CCEEEEEeeCCc
Confidence 345677777654 35789999999988641 11111112223346778899999987543 568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
+.+|++++|||||+..++++.|+.++|.++++.++..
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998764
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=2.6e-26 Score=232.82 Aligned_cols=183 Identities=22% Similarity=0.273 Sum_probs=148.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34678999999999999999999999999998887 667788999999999999999999999999999999987652
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
....++.+|... ..++||||||||.+...+. .. .........++|+..||++... ..+++||+|||.+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~--~~---~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~~ 197 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG--EG---ESEASRRIKTELLVQMNGVGND-SQGVLVLGATNIP 197 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-----------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCG
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCC--CC---cchHHHHHHHHHHHHhhccccc-CCCeEEEeecCCc
Confidence 345566666544 4789999999999864211 11 1223456678899999987542 3568999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH 392 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~ 392 (455)
+.||++++| ||+..++++.|+.++|..+++.++.....
T Consensus 198 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~ 235 (355)
T 2qp9_X 198 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS 235 (355)
T ss_dssp GGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB
T ss_pred ccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC
Confidence 999999999 99999999999999999999999876543
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=2.2e-25 Score=232.51 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=148.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CCcEEEEeccccC-
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDMELASLR- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~~~~~~- 278 (455)
.++.+|++|+|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|+++ +.+++.++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 45678999999999999999999999999888875 45667899999999999999999999999 8899999887753
Q ss_pred -----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 279 -----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 279 -----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
....++.+|... ..++||||||||.+... +... ........++.||..||++... ..+++||+|||.
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~--~~~~---~~~~~~~~~~~lL~~l~~~~~~-~~~v~vI~atn~ 280 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS--RSEN---ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNI 280 (444)
T ss_dssp -----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCC--SSCC---CCGGGHHHHHHHHTTTTCSSCC-CSSCEEEEEESC
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccC--CCCc---cccHHHHHHHHHHHHHhCcccC-CCCEEEEecCCC
Confidence 234566666543 47899999999998642 1111 1233456778999999997532 357999999999
Q ss_pred CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC
Q 047029 352 KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS 391 (455)
Q Consensus 352 ~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~ 391 (455)
++.||++++| ||+..++++.|+.++|..|++.++....
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~ 318 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ 318 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC
Confidence 9999999999 9999999999999999999999986543
No 19
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.8e-25 Score=222.98 Aligned_cols=247 Identities=19% Similarity=0.287 Sum_probs=180.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC-
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS- 279 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~- 279 (455)
.++.+|++++|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3567999999999999999999999899998888765 55789999999999999999999999999999999987632
Q ss_pred -----hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 280 -----NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 280 -----~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
...++.+|... ..++||||||||.+...+ .. .........+..++..+++.....+..++||+|||.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~--~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR--GD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-----------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccC--CC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 23455555433 468999999999986421 11 1123345677889999998865555678999999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCch-HHHHHhhcccc-Cchh--HHHhc-------------
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMF-DEIEELIKEVE-VTPA--EEFMK------------- 415 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~-~ei~~ll~~~~-~tpa--~~l~~------------- 415 (455)
+.||++++| ||+..++++.|+.+++..++..++......+. .++..+..... ++++ ..++.
T Consensus 232 ~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~ 309 (357)
T 3d8b_A 232 QEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA 309 (357)
T ss_dssp GGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-
T ss_pred hhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999 99999999999999999999998865443332 23333333221 3333 11111
Q ss_pred -------cCCHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhccCC
Q 047029 416 -------SEDADVALNGLVDFLLRKKEQTMKCNEEENESLKNEEDCT 455 (455)
Q Consensus 416 -------~~~~~~al~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~ 455 (455)
........+.+.++++..+........+..+.+.+.++|+
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 310 DIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp ---------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred hhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 1111234567778888887766666667788888888774
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=6.7e-25 Score=231.11 Aligned_cols=183 Identities=27% Similarity=0.375 Sum_probs=151.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS-- 279 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~-- 279 (455)
++.+|++++|.+++|+++.+.+. ++..+..|..+|...++|+||+||||||||+|++++|++++.+++.++++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 56789999999999999988665 678888999999999999999999999999999999999999999999887632
Q ss_pred ----hHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 280 ----NSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 280 ----~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
...++.+|.... .|+|+||||||.+...+ .............+++.++..|||.... ..++++++||+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r--~~~~~~~~~e~~~~l~~LL~~Ldg~~~~--~~viviAatn~p~ 180 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR--GSGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRPD 180 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCS--SSSTTTSSHHHHHHHHHHHHHGGGCCSS--CCCEEEECCSCGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhh--ccCcCCCcHHHHHHHHHHHHHhcccccC--ccEEEEEecCChh
Confidence 245666776653 47999999999885421 1111112233456788999999987543 5689999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.||++++||||||.+|+++.|+.++|.+|++.++..
T Consensus 181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 216 (499)
T ss_dssp GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS
T ss_pred hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999988754
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=224.97 Aligned_cols=188 Identities=26% Similarity=0.317 Sum_probs=150.2
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC
Q 047029 199 NLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR 278 (455)
Q Consensus 199 ~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~ 278 (455)
...++.+|++++|.+.+++.|.+.+..+...++.|...+. +++++|||||||||||++|+++|++++.+++.++++.+.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 4567889999999999999999999999998888888774 478999999999999999999999999999999998763
Q ss_pred ------ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC
Q 047029 279 ------SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN 350 (455)
Q Consensus 279 ------~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN 350 (455)
....++.+|... ..++||||||||.++..+. . .........+..|+..+++.....+..++||+|||
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~--~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR--E---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-------------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCC--C---ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 234455666443 4679999999999865211 1 11223456778899999988765556799999999
Q ss_pred CCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 351 YKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 351 ~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+++.||++++| ||+.+|+++.|+.+++..+++.++......+
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l 302 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPL 302 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCS
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999 9999999999999999999999987654444
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=9.7e-25 Score=229.94 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=155.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
.+.+|++++|.+..+++|.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
....++.+|... ..|+||||||||.+...+ .. .........++.|+..||+.... .+++||+|||+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~--~~---~~~~~~~~~~~~LL~~ld~~~~~--~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EK---THGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCT--TS---CCCHHHHHHHHHHHHHHHHSCTT--SCEEEEEEESCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccc--cc---ccchHHHHHHHHHHHHhhccccC--CceEEEEecCCcc
Confidence 234566677554 468999999999986521 11 11223456778899999987554 5699999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.||++++|+|||+..|+++.|+.++|.++++.++...
T Consensus 352 ~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~ 388 (489)
T 3hu3_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (489)
T ss_dssp GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS
T ss_pred ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988653
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=3e-24 Score=211.07 Aligned_cols=186 Identities=26% Similarity=0.344 Sum_probs=146.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC-
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS- 279 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~- 279 (455)
.++.+|++++|.+++++.+.+.+.....+++.|..++ .+++++||+||||||||++|+++|++++.+++.++++.+.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567999999999999999999998888888888776 45789999999999999999999999999999999887632
Q ss_pred -----hHHHHHHHHh--hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc-CCCceEEEEEcCC
Q 047029 280 -----NSDLRRLLVS--TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS-CGDERIIVFTTNY 351 (455)
Q Consensus 280 -----~~~l~~ll~~--~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-~~~~~ivI~TTN~ 351 (455)
...++.++.. ...++||||||+|.+...+... .........+.|+..+|+.... .+..++||+|||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-----~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-----EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC----------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-----cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 2344455533 3578999999999986521110 1122345667889999987543 2356899999999
Q ss_pred CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 352 KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 352 ~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
++.+|++++| ||+..++++.|+.+++..+++.++......+
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~ 209 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL 209 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCS
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999 9999999999999999999999887654433
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=4.4e-25 Score=213.92 Aligned_cols=185 Identities=30% Similarity=0.391 Sum_probs=145.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
++.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++|+++|++++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45689999999999999988765 68889999999999999999999999999999999999999999988877652
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
+...++.+|... ..++||||||+|.+...+.... ...........++.|++.+++.... ...++||+|||.++
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGG-VVSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPE 162 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-----------CCCSCSSTTTTTTTTTCSSCS-CSCCEEEECBSCCT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccc-cCCCchhHHHHHHHHHHHhhCcccC-CCCEEEEEecCCch
Confidence 122333444332 3679999999999865221111 1111223345678899999886442 34589999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.+|++++|+|||+..|+++.|+.++|.++++.++..
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998864
No 25
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=1.7e-24 Score=213.76 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=118.0
Q ss_pred hhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC------hHHHHHHHHhh------CCceEEEEecc
Q 047029 234 SRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS------NSDLRRLLVST------GNRSILVIEDI 301 (455)
Q Consensus 234 ~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~------~~~l~~ll~~~------~~~~IL~iDEi 301 (455)
...+..+|+|+|||||||||||++|+++|++++.+++.++++.+.+ ...++.+|... ..++|||||||
T Consensus 29 ~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 29 KLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp CCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 3446788999999999999999999999999999999999887632 34566677554 36899999999
Q ss_pred cchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc---------cCCCceEEEEEcCCCCCCCccccCCCceeEEEEeC
Q 047029 302 DCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS---------SCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMS 372 (455)
Q Consensus 302 D~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~---------~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~ 372 (455)
|.+.. +..+........+...+.|++.+|+... ....+++||+|||+++.||++++|||||+.+|++
T Consensus 109 D~~~~---~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~- 184 (293)
T 3t15_A 109 DAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 184 (293)
T ss_dssp C-----------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC-
T ss_pred hhhcC---CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC-
Confidence 99865 1111111122344566889999985531 1235689999999999999999999999999984
Q ss_pred CCCHHHHHHHHHHhhcccCCCchHHHHHhhcc
Q 047029 373 YLTPGGFKILAFNYLKIKSHSMFDEIEELIKE 404 (455)
Q Consensus 373 ~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~ 404 (455)
|+.++|.+|++.++...+ ...+++..+...
T Consensus 185 -P~~~~r~~Il~~~~~~~~-~~~~~l~~~~~~ 214 (293)
T 3t15_A 185 -PTREDRIGVCTGIFRTDN-VPAEDVVKIVDN 214 (293)
T ss_dssp -CCHHHHHHHHHHHHGGGC-CCHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHhccCCC-CCHHHHHHHhCC
Confidence 699999999998887543 234556555554
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=2e-23 Score=200.91 Aligned_cols=184 Identities=27% Similarity=0.375 Sum_probs=145.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.++.+|++++|.+++++++.+... ++..+..+..++...++|++|+||||||||++++++|+.++..++.++...+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 445699999999999999987655 56777889999999999999999999999999999999999999988875541
Q ss_pred ----ChHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
....+..+|.... .++++++||||.+...+. .............+..+++.++|.... ..++++++||.|
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~--~~~~~~~~~~~~~~~~ll~~l~g~~~~--~~~i~~a~t~~p 164 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG--SGVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRP 164 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----------CHHHHHHHHHHHHHHHTCCTT--CCEEEEEEESCG
T ss_pred HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccC--ccccccchHHHHHHHHHHHHHhCCCCC--CCEEEEEccCCc
Confidence 1244566776653 579999999998754221 111111223345678899999987543 457888999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
+.||++++|+|||+.+|+++.|+.++|.++++.++..
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999988753
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=2e-22 Score=196.89 Aligned_cols=184 Identities=27% Similarity=0.374 Sum_probs=144.9
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-- 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-- 278 (455)
.++.+|++++|.+++++++.+... ++..+..+..++...++|++|+||||||||+|++++|+.++..++.++...+.
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 466799999999999999877655 56777889999999999999999999999999999999999999988876541
Q ss_pred ----ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 279 ----SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 279 ----~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
....+..+|... ..++++++||||.+...+.. ............+..+++.++|.... ..++++++||.|
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~--~~~~~~~~~~~~~~~ll~~lsgg~~~--~~~i~~a~t~~p 188 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS--GVGGGNDEREQTLNQLLVEMDGFEKD--TAIVVMAATNRP 188 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----------CHHHHHHHHHHHHHHTTCCTT--CCEEEEEEESCT
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccc--ccCCcchHHHHHHHHHHHHHhCCCCC--CCEEEEEecCCc
Confidence 123455666554 35799999999987542111 00111223345677888889887432 457888999999
Q ss_pred CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 353 ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 353 ~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
+.||++++|+|||+.+|+++.|+.++|.++++.++..
T Consensus 189 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225 (278)
T ss_dssp TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999988753
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.7e-25 Score=248.84 Aligned_cols=184 Identities=22% Similarity=0.351 Sum_probs=151.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
+..+|++++|.+++|+.|.+.+..++.+++.|..+|+.+++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 551 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhh
Confidence 34589999999999999999888778888889999999999999999999999999999999999999999887752
Q ss_pred ---ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 279 ---SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 279 ---~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
....++.+|... ..|+||||||||.+...+ ..............++.||+.||+.... .+++||+|||+++
T Consensus 552 ~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r--~~~~~~~~~~~~~v~~~LL~~ld~~~~~--~~v~vI~tTN~~~ 627 (806)
T 1ypw_A 552 FGESEANVREIFDKARQAAPCVLFFDELDSIAKAR--GGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPD 627 (806)
T ss_dssp TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTT--TTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCG
T ss_pred cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhc--cCCCCCcchhHHHHHHHHHHHHhccccc--CCeEEEEecCCcc
Confidence 346677787655 368999999999986522 1111111223457789999999998654 6799999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.||||++|||||+.+|++++|+.+++..|++.++..
T Consensus 628 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999864
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=2.2e-21 Score=215.85 Aligned_cols=182 Identities=24% Similarity=0.324 Sum_probs=153.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC--
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS-- 279 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~-- 279 (455)
.+.+|++|+|.++++++|.+.+..++.+++.|..+++.+++++||+||||||||++++++|+.++.+++.+++..+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ----hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 280 ----NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 280 ----~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
...++.+|... ..++|+||||||.+...+. . ............|+..+++.... ..+++|+|||+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~--~---~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~ 351 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--K---THGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPN 351 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTS--C---CCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccc--c---ccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCch
Confidence 24566666554 3689999999999865211 1 11123356678899999998654 5689999999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhccc
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.+|+++.|+|||+..+.++.|+.++|.++++.++...
T Consensus 352 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999887643
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=7.5e-19 Score=175.63 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=138.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|++++|.+..++.+...+...... .....++||+||||||||++|+++|+.++.+++.+++..+...
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~ 94 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS 94 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch
Confidence 45679999999999999988877654321 2335689999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc--------------CCCceEEE
Q 047029 281 SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS--------------CGDERIIV 346 (455)
Q Consensus 281 ~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~--------------~~~~~ivI 346 (455)
..+...+.....+++|||||||.+.. .....|+..++...-. ....+++|
T Consensus 95 ~~~~~~~~~~~~~~vl~lDEi~~l~~----------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 GDLAAILTNLSEGDILFIDEIHRLSP----------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp HHHHHHHHTCCTTCEEEEETGGGCCH----------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred hHHHHHHHhccCCCEEEEechhhcCH----------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 88888888888899999999998742 3445566666543200 01147899
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
++||....++++|++ ||+.+++++.|+.+++..++..++......+.++.
T Consensus 159 ~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~ 208 (338)
T 3pfi_A 159 GATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKA 208 (338)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred EeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 999999999999999 99999999999999999999998876544444443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=3.9e-20 Score=193.43 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=114.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC--CcEEEEeccccCC
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK--FDIYDMELASLRS 279 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~--~~v~~l~~~~~~~ 279 (455)
+...|++++|.+++++.+...+..+ +.|..+++|+|||||||||||++|+++|++++ .+++.++++.+.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456899999999999888766432 23666789999999999999999999999999 8999999887632
Q ss_pred -----hHHHHHHHHhh-----CCceEEEEecccchhhhhhhcCCCCCCCCcch---------------hhHhhhhhhhhc
Q 047029 280 -----NSDLRRLLVST-----GNRSILVIEDIDCSIELENRQCGGGYDENNSQ---------------VTLSGLLNFVDG 334 (455)
Q Consensus 280 -----~~~l~~ll~~~-----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~---------------~~ls~LL~~ldg 334 (455)
...+++.|..+ ..|+||||||||.+...+........ ..... .....++..++.
T Consensus 104 ~~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY-GKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCc-chHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 23477777665 46899999999999763322111110 00111 112224444442
Q ss_pred ccccCCCceEEEEEcCCCCCCCccccCCCceeE--EEEeCCCCH
Q 047029 335 LWSSCGDERIIVFTTNYKERLDPALLRPGRMDM--HIHMSYLTP 376 (455)
Q Consensus 335 ~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~--~I~~~~p~~ 376 (455)
.....++.++|++|||+++.+|++++||||||. .+.++.|+.
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 222233445556899999999999999999998 566777754
No 32
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=7e-18 Score=167.12 Aligned_cols=171 Identities=22% Similarity=0.263 Sum_probs=134.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|++++|.+..++.+.+.+...... ...+.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHH--------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHcc--------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 35679999999999999888877654321 1235789999999999999999999999999999999988777
Q ss_pred HHHHHHHHh-hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc-----c---------CCCceEE
Q 047029 281 SDLRRLLVS-TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS-----S---------CGDERII 345 (455)
Q Consensus 281 ~~l~~ll~~-~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~-----~---------~~~~~iv 345 (455)
..+...+.. ...+++|||||||.+.. .....|+..++.... . ...++++
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~----------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR----------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH----------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc----------------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 888888776 67789999999998742 233445555553210 0 0124789
Q ss_pred EEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH
Q 047029 346 VFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE 397 (455)
Q Consensus 346 I~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e 397 (455)
|++||.++.+++++.+ ||+.++.++.|+.+++..++..++...+..+.++
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~ 191 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEE 191 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHH
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHH
Confidence 9999999999999999 9998999999999999999999887554444443
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=2.2e-18 Score=169.84 Aligned_cols=180 Identities=17% Similarity=0.233 Sum_probs=135.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCC---ceeEEECCCCCChHHHHHHHHHHcC-------CcEEEEecccc
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWK---RGYLLYGPPGTGKSSLIAAMANYLK-------FDIYDMELASL 277 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~---rg~LL~GPpGTGKTsla~alA~~l~-------~~v~~l~~~~~ 277 (455)
+++|.+++|+.|.+.+..+. .+..+.+.|+..+ .++||+||||||||++|+++|+.++ .+++.++++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 68999999999999887654 4666777776654 4699999999999999999999983 38888888776
Q ss_pred CC------hHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 278 RS------NSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 278 ~~------~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
.+ ...+..+|... .++||||||+|.+...+. ........+..|++.++.. ..++++|++||.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~-------~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~ 178 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDN-------ERDYGQEAIEILLQVMENN----RDDLVVILAGYA 178 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC----------CCTHHHHHHHHHHHHHC----TTTCEEEEEECH
T ss_pred hhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCC-------cccccHHHHHHHHHHHhcC----CCCEEEEEeCCh
Confidence 32 34455666554 578999999998863110 1122456677888888864 246788899986
Q ss_pred CC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 352 KE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 352 ~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
.+ .++|+|++ ||+.+|+|+.|+.+++..+++.++......+.++....+
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l 232 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETAL 232 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 53 35799999 999999999999999999999999876555555544443
No 34
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=3e-19 Score=184.95 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=74.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcC-CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC--------
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR-------- 278 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~-~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~-------- 278 (455)
.|+|+++.|+.+...+...++++..+...+. .+++|+||+||||||||++++++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999998877777766665544 3678999999999999999999999999999999986542
Q ss_pred ChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE-cCCCCCCCc
Q 047029 279 SNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT-TNYKERLDP 357 (455)
Q Consensus 279 ~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T-TN~~~~Ld~ 357 (455)
....++.++... ..++++||++.+... ........+++.||+.|||+.+. .. + +++ ||+++.||+
T Consensus 96 ~e~~lr~lf~~a--~~~~~~De~d~~~~~--------~~~~~e~rvl~~LL~~~dg~~~~--~~-v-~a~~TN~~~~ld~ 161 (444)
T 1g41_A 96 VDSIIRDLTDSA--MKLVRQQEIAKNRAR--------AEDVAEERILDALLPPAKNQWGE--VE-N-HDSHSSTRQAFRK 161 (444)
T ss_dssp THHHHHHHHHHH--HHHHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHH--Hhcchhhhhhhhhcc--------chhhHHHHHHHHHHHHhhccccc--cc-c-ccccccCHHHHHH
Confidence 245566666443 223457888765321 11234467899999999999664 22 2 454 999999999
Q ss_pred cccCCCceeEEEEeCCCCHH-HHHHHH
Q 047029 358 ALLRPGRMDMHIHMSYLTPG-GFKILA 383 (455)
Q Consensus 358 allRpGR~d~~I~~~~p~~~-~~~~L~ 383 (455)
||+||||||.+|+++.|+.. .+.+++
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ---------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhh
Confidence 99999999999999999987 455543
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.72 E-value=3.6e-16 Score=144.44 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=120.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~ 275 (455)
..|.+|++++|.++.++.+.+.+.. . ...+++|+||||||||++++++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 4678899999998888877766541 1 13359999999999999999999986 4567888877
Q ss_pred ccCChHHHHHHHHh--------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE
Q 047029 276 SLRSNSDLRRLLVS--------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF 347 (455)
Q Consensus 276 ~~~~~~~l~~ll~~--------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~ 347 (455)
.......+...+.. ...+.||+|||+|.+.. .....|+..++.. ..+..+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~l~~~l~~~----~~~~~~i~ 137 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------------DAQAALRRTMEMY----SKSCRFIL 137 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------------HHHHHHHHHHHHT----TTTEEEEE
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------------HHHHHHHHHHHhc----CCCCeEEE
Confidence 66555555444422 14678999999998742 2344566666543 24578889
Q ss_pred EcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 348 TTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 348 TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
|||.++.+++++.+ |+. .++++.|+.++...++..++...+..+.+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999 887 89999999999999999887654444433
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.72 E-value=4.5e-17 Score=161.87 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=117.6
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|++++|.+++++.+.+.+. ....+..+|++||||||||++++++|+.++.+++.++++... .
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~ 86 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-I 86 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-H
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-H
Confidence 457899999999999887777665 123356789999999999999999999999999999987754 4
Q ss_pred HHHHHHHHhh-------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC
Q 047029 281 SDLRRLLVST-------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE 353 (455)
Q Consensus 281 ~~l~~ll~~~-------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~ 353 (455)
..++..+... ..+.||||||+|.+.. ......|+..++... .++.+|+|||.+.
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------------~~~~~~L~~~le~~~----~~~~iI~~~n~~~ 147 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------------AESQRHLRSFMEAYS----SNCSIIITANNID 147 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------------HHHHHHHHHHHHHHG----GGCEEEEEESSGG
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------------HHHHHHHHHHHHhCC----CCcEEEEEeCCcc
Confidence 5555544331 1578999999998741 123455666666542 3478899999999
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
.+++++++ ||. .++|+.|+.+++..++..++
T Consensus 148 ~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 148 GIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp GSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred ccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 99999999 885 69999999999776665544
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=3.9e-17 Score=160.24 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=121.3
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhh-cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC-------
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRV-GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS------- 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~-g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~------- 279 (455)
.++|.+++++.+...+...+.+....... +...+.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58899999999988887644332221111 1134679999999999999999999999999999999887632
Q ss_pred -hHHHHHHHHhh-------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc------CCCceEE
Q 047029 280 -NSDLRRLLVST-------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS------CGDERII 345 (455)
Q Consensus 280 -~~~l~~ll~~~-------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------~~~~~iv 345 (455)
...+..++... ..++||||||+|.+..... ....+.......+.|+..+++.... ....+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~----~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~ 171 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE----YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF 171 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSS----CCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccc----ccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEE
Confidence 23455655432 2478999999998854110 0001111122356778888764210 1235778
Q ss_pred EEE----cCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHH
Q 047029 346 VFT----TNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 346 I~T----TN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~ 385 (455)
|++ ++.+..+++++++ ||+.+|+|+.|+.+++..+++.
T Consensus 172 i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 172 IASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred EEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 887 4577889999998 9999999999999999999985
No 38
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=3.4e-16 Score=166.07 Aligned_cols=171 Identities=17% Similarity=0.286 Sum_probs=120.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHh-HHHHhhhcCC---CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKR-REFYSRVGKA---WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~-~~~~~~~g~~---~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
-.|.+|++++|.+..++.+.+.+..+... +..|++.|.. .++++||+||||||||++|+++|++++.+++.++++.
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 46789999999999999999988865543 2444444443 5689999999999999999999999999999999988
Q ss_pred cCChHHHHHHHHh--------------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc
Q 047029 277 LRSNSDLRRLLVS--------------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW 336 (455)
Q Consensus 277 ~~~~~~l~~ll~~--------------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 336 (455)
..+...+...+.. ...+.||||||+|.+.. ..+..+..|++.++..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~-------------~~~~~l~~L~~~l~~~- 178 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG-------------GDRGGVGQLAQFCRKT- 178 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT-------------TSTTHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch-------------hhHHHHHHHHHHHHhc-
Confidence 7665444333321 14578999999998853 1122345566665542
Q ss_pred ccCCCceEEEEEcCC--CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 337 SSCGDERIIVFTTNY--KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 337 ~~~~~~~ivI~TTN~--~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+..||+++|. ...+. .+.| +...|.|+.|+.+++..++...+...+..+
T Consensus 179 -----~~~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i 229 (516)
T 1sxj_A 179 -----STPLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKL 229 (516)
T ss_dssp -----SSCEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCC
T ss_pred -----CCCEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1224444443 23343 4444 446899999999999999888776544333
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=5.2e-16 Score=156.51 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=116.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--cEEEEeccccC
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELASLR 278 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~~~~ 278 (455)
.+..+|++++|.+..++.+...+.. +. .|..+++++|||||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-IR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-HH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-HH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3334599999999998876554432 22 24555689999999999999999999999975 66666654311
Q ss_pred --------------------------------------------------C-----hHHHHHHHHhh-------C----C
Q 047029 279 --------------------------------------------------S-----NSDLRRLLVST-------G----N 292 (455)
Q Consensus 279 --------------------------------------------------~-----~~~l~~ll~~~-------~----~ 292 (455)
+ ...++..+... . .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 0 22334443221 1 1
Q ss_pred ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc-----------CCCCCCCccccC
Q 047029 293 RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT-----------NYKERLDPALLR 361 (455)
Q Consensus 293 ~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT-----------N~~~~Ld~allR 361 (455)
|+||||||+|.+.. ..++.|+..++.. ...+++++|. |.+..++++|++
T Consensus 190 ~~vl~IDEi~~l~~----------------~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s 249 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI----------------ESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD 249 (368)
T ss_dssp BCEEEEESGGGSBH----------------HHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT
T ss_pred CceEEEhhccccCh----------------HHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHh
Confidence 57999999998732 3455566666542 1234444443 357889999999
Q ss_pred CCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 362 PGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 362 pGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
||.. +++++|+.+++..+++.++...+..+.++..+.+
T Consensus 250 --R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l 287 (368)
T 3uk6_A 250 --RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVL 287 (368)
T ss_dssp --TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHH
T ss_pred --hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9976 8999999999999999988776555555444333
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=1.8e-16 Score=153.83 Aligned_cols=167 Identities=19% Similarity=0.221 Sum_probs=111.8
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---C----
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR---S---- 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~---~---- 279 (455)
+.+++.....+.++.....+.. .....+..+++++||+||||||||++|+++|+.++.+++.+++++.. .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~---~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHH---HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHH---HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3456666665666654322221 22333456678999999999999999999999999999999876421 1
Q ss_pred hHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCc
Q 047029 280 NSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDP 357 (455)
Q Consensus 280 ~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~ 357 (455)
...++.++... ..++||||||||.++.... .........+..|+..+++... .+..++||+|||.++.+++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~------~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP------IGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT------TTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCC------CChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcch
Confidence 13456666543 4689999999999864111 0112233445555666665432 2356789999999998888
Q ss_pred -cccCCCceeEEEEeCCCCH-HHHHHHHHH
Q 047029 358 -ALLRPGRMDMHIHMSYLTP-GGFKILAFN 385 (455)
Q Consensus 358 -allRpGR~d~~I~~~~p~~-~~~~~L~~~ 385 (455)
.+.+ ||+..|++|.++. ++...++..
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEALEL 210 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHHHH
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHHHh
Confidence 5555 9999999987766 555555544
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=2.8e-16 Score=159.12 Aligned_cols=174 Identities=18% Similarity=0.230 Sum_probs=118.2
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhh-hcC-CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCC------
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSR-VGK-AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRS------ 279 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~-~g~-~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~------ 279 (455)
.++|++.+++.+...+.....+...... .+. .+++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3689999999999888655543321111 112 24679999999999999999999999999999999987642
Q ss_pred --hHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc-------------
Q 047029 280 --NSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS------------- 338 (455)
Q Consensus 280 --~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------------- 338 (455)
...+..++... ..++||||||||.+... +.......+......++.||..|||....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~--~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~ 173 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK--SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQE 173 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC--SSCC---CHHHHHHHHHHHHHHHHCC----------------
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc--ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCc
Confidence 23345555443 35789999999988541 11111111111223688899999954211
Q ss_pred ----CCCceEEEEEcCCC----------CC-----------------------------------CCccccCCCceeEEE
Q 047029 339 ----CGDERIIVFTTNYK----------ER-----------------------------------LDPALLRPGRMDMHI 369 (455)
Q Consensus 339 ----~~~~~ivI~TTN~~----------~~-----------------------------------Ld~allRpGR~d~~I 369 (455)
...++++|+|+|.. .. +.|+|+. ||+..+
T Consensus 174 ~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~ 251 (363)
T 3hws_A 174 FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVA 251 (363)
T ss_dssp CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEE
T ss_pred eEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeee
Confidence 11345566666542 11 6788887 999999
Q ss_pred EeCCCCHHHHHHHHHH
Q 047029 370 HMSYLTPGGFKILAFN 385 (455)
Q Consensus 370 ~~~~p~~~~~~~L~~~ 385 (455)
.+.+|+.+.+..|+..
T Consensus 252 ~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 252 TLNELSEEALIQILKE 267 (363)
T ss_dssp ECCCCCHHHHHHHHHS
T ss_pred ecCCCCHHHHHHHHHH
Confidence 9999999999998886
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=1.1e-16 Score=144.66 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|.+|++++|.++..+++.+.+.. ..+++++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 367899999998888777765531 235789999999999999999999997 678888
Q ss_pred EeccccCC--------hHHHHHHHH---hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCC
Q 047029 272 MELASLRS--------NSDLRRLLV---STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCG 340 (455)
Q Consensus 272 l~~~~~~~--------~~~l~~ll~---~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~ 340 (455)
+++..+.. ...+..++. ....+.||+|||+|.+...... .........+...++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--------~~~~~~~~~l~~~~~~------ 149 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--------DGAMDAGNMLKPALAR------ 149 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--------------CCCCHHHHHHHHHT------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc--------cchHHHHHHHHHhhcc------
Confidence 88765421 123444443 2346789999999998642110 0011112222222221
Q ss_pred CceEEEEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHH
Q 047029 341 DERIIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILA 383 (455)
Q Consensus 341 ~~~ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~ 383 (455)
.++.+|++||.++ .+++++++ ||+ .|+++.|+.+++.+++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 3567888888775 78999999 998 6999999999988764
No 43
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.67 E-value=2.9e-15 Score=139.86 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=118.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|.+..++.+.+.+.. + ..++.++|+||||||||++++++++.++.
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4577899999999888888776642 1 12458999999999999999999998843
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.........+..++.... .+.+|+|||+|.+.. ..+..|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~----------------~~~~~l~~ 148 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------------HSFNALLK 148 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH----------------HHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH----------------HHHHHHHH
Confidence 334444433233445666665532 468999999998632 34556777
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
.++.. +....+|++||.++.+++++.+ |+ ..++++.++.++..+++..++...+..+.+
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~ 207 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 207 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 76643 3568899999999999999998 75 689999999999999999888655444333
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=5.2e-16 Score=146.00 Aligned_cols=173 Identities=14% Similarity=0.192 Sum_probs=113.1
Q ss_pred cccCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---CcEEEEec
Q 047029 198 INLDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMEL 274 (455)
Q Consensus 198 ~~~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~ 274 (455)
..+.++.+|+++++.+ ..+.+++.+..+... +.+++++|+||||||||++++++|+.+. ..++.+++
T Consensus 19 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 19 VHLPDDETFTSYYPAA-GNDELIGALKSAASG---------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CCCCTTCSTTTSCC---CCHHHHHHHHHHHHT---------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCCCCChhhccCCC-CCHHHHHHHHHHHhC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3455668999999732 223344455444432 1367999999999999999999999884 78888888
Q ss_pred cccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCC
Q 047029 275 ASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKE 353 (455)
Q Consensus 275 ~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~ 353 (455)
..+.. .+.+.+.....+.+|+|||+|.+.. . ......|+..++..... ....+|+||| .++
T Consensus 89 ~~~~~--~~~~~~~~~~~~~vliiDe~~~~~~-------------~-~~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 89 GIHAS--ISTALLEGLEQFDLICIDDVDAVAG-------------H-PLWEEAIFDLYNRVAEQ--KRGSLIVSASASPM 150 (242)
T ss_dssp GGGGG--SCGGGGTTGGGSSEEEEETGGGGTT-------------C-HHHHHHHHHHHHHHHHH--CSCEEEEEESSCTT
T ss_pred HHHHH--HHHHHHHhccCCCEEEEeccccccC-------------C-HHHHHHHHHHHHHHHHc--CCCeEEEEcCCCHH
Confidence 76532 1222333345689999999998742 1 11234455555544332 2232555555 443
Q ss_pred ---CCCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHH
Q 047029 354 ---RLDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEE 400 (455)
Q Consensus 354 ---~Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ 400 (455)
.+++++.+ |+. ..++++.|+.+++.+++..++...+..+.+++.+
T Consensus 151 ~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (242)
T 3bos_A 151 EAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGR 200 (242)
T ss_dssp TTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45688888 776 8999999999999999999887554444444433
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=1.5e-15 Score=158.22 Aligned_cols=150 Identities=20% Similarity=0.338 Sum_probs=112.6
Q ss_pred CCCCCCcccccCHHHH---HHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 201 DHPSTFDTLAMDPVLK---QALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k---~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
-.|.+|++++|.++++ +.+...+. . |. ..++|||||||||||++|+++|+.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~----~-------~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIE----A-------GH--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHH----H-------TC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHH----c-------CC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4578999999999887 55555443 1 11 2589999999999999999999999999999987653
Q ss_pred CChHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEc--
Q 047029 278 RSNSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTT-- 349 (455)
Q Consensus 278 ~~~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TT-- 349 (455)
+...++.++... ..+.||||||||.+.. .....|+..++. +.+++|++|
T Consensus 87 -~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~----------------~~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK----------------SQQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH----------------HHHHHHHHHHhc------CceEEEecCCC
Confidence 345566665433 4689999999998732 123457777764 235666655
Q ss_pred CCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 350 NYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 350 N~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
|....++++|++ |+. .+.+..|+.++...++.+++..
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 455689999999 886 6789999999999999999875
No 46
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.66 E-value=4.1e-16 Score=166.34 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=112.4
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh-----
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN----- 280 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~----- 280 (455)
.++++|.+++++.+.+.+....... . . ....++|+||||||||++++++|+.++.++..+++..+...
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~----~--~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK----S--L-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS----S--C-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc----c--C-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 3458899999988876554221111 1 1 35579999999999999999999999999999988764321
Q ss_pred ----------HHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccC----------
Q 047029 281 ----------SDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSC---------- 339 (455)
Q Consensus 281 ----------~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~---------- 339 (455)
..+...|.... ...|+||||||.+... ......+.||..||......
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~------------~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSD------------FRGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC---------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhh------------hccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 22334444442 3459999999988541 11124566777777532110
Q ss_pred -CCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 340 -GDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 340 -~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
-.+++||+|||.++.++|+|++ ||+ .|+++.|+.+++..++++++
T Consensus 221 ~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 221 DLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp BCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 1457999999999999999999 996 69999999999999999987
No 47
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=8.3e-16 Score=153.27 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=109.8
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHH
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLR 284 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~ 284 (455)
.++.++|.+++++.+...+.. ++++||+||||||||++|+++|+.++.+++.++++......++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 467889998888777665542 35899999999999999999999999999988875322222221
Q ss_pred HHH--H-------hhCC---ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-------cccCCCceEE
Q 047029 285 RLL--V-------STGN---RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-------WSSCGDERII 345 (455)
Q Consensus 285 ~ll--~-------~~~~---~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-------~~~~~~~~iv 345 (455)
... . .... .+||||||+|.+.. ...+.|++.|+.. ....+...++
T Consensus 90 g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~----------------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA----------------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH----------------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCCCceEeccCcccccEEEEEccccCCH----------------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 100 0 0001 37999999998632 3455566666532 2222345778
Q ss_pred EEEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 346 VFTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 346 I~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
|+|+|+.+ .+++++++ ||++++++++|+.+++.++++..+..
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88888554 38999999 99999999999999999999988764
No 48
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.65 E-value=1.2e-15 Score=150.06 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=118.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~ 275 (455)
..|.+|++++|.+..++.+.+.+.. |. ..++|||||||||||++++++|+.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------KN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-----------TC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-----------CC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 5678999999999988877665531 21 2249999999999999999999997 4457788877
Q ss_pred ccCChHHHHHHHHh----h----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE
Q 047029 276 SLRSNSDLRRLLVS----T----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF 347 (455)
Q Consensus 276 ~~~~~~~l~~ll~~----~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~ 347 (455)
...+...++..+.. . ..+.||+|||+|.+.. .....|+..++.. +...++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~L~~~le~~----~~~~~~i~ 137 (319)
T 2chq_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------------DAQAALRRTMEMY----SKSCRFIL 137 (319)
T ss_dssp STTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH----------------HHHHTTGGGTSSS----SSSEEEEE
T ss_pred cccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH----------------HHHHHHHHHHHhc----CCCCeEEE
Confidence 65433333322221 1 3478999999998742 2345566666543 35678899
Q ss_pred EcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 348 TTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 348 TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
+||.++.+++++.+ |+. .++++.|+.++...++..++...+..+.+
T Consensus 138 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 183 (319)
T 2chq_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (319)
T ss_dssp EESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCH
T ss_pred EeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999 885 89999999999999999887655444433
No 49
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=2.7e-15 Score=147.59 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=115.5
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLR 284 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~ 284 (455)
.++|.+..++.+...+......-. ....+...+||+||||||||++|+++|+.+ +.+++.++++.+.......
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~----~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLK----DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCS----CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCC----CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 577888888888887765432100 011123479999999999999999999998 5669999988764433222
Q ss_pred HHH------------------HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCC------
Q 047029 285 RLL------------------VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCG------ 340 (455)
Q Consensus 285 ~ll------------------~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~------ 340 (455)
.++ .....++||||||+|.+.. ...+.|+..++......+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~----------------~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP----------------DVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH----------------HHHHHHHHHHHHSEEECTTSCEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH----------------HHHHHHHHHHhcCEEEcCCCCEEE
Confidence 222 1123458999999998732 455677777764321111
Q ss_pred -CceEEEEEcCC--------------------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 341 -DERIIVFTTNY--------------------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 341 -~~~ivI~TTN~--------------------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
.+.++|+|||. ...++|+|++ ||+..+.+++|+.+++..|++.++..
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 35789999998 5578899998 99999999999999999999998864
No 50
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=6.1e-15 Score=145.21 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=119.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~ 275 (455)
..|.+|++++|.+..++.+.+.+.. | ..+ ++|||||||||||++++++|+.+ +.+++.++++
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 4678999999999988887776531 2 223 39999999999999999999997 4567778877
Q ss_pred ccCChHHHHHHHHhh---------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 276 SLRSNSDLRRLLVST---------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 276 ~~~~~~~l~~ll~~~---------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
...+...++.++... ..+.||+|||+|.+.. .....|+..++.. +....+|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~----------------~~~~~L~~~le~~----~~~~~~i 141 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA----------------GAQQALRRTMELY----SNSTRFA 141 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH----------------HHHHTTHHHHHHT----TTTEEEE
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH----------------HHHHHHHHHHhcc----CCCceEE
Confidence 654555565554321 2378999999998742 2344566666542 2457888
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
++||.++.+++++.+ |+. .++++.|+.++...++..++...+..+.+
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 188 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTN 188 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 899999999999999 775 89999999999999999887655444433
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=2.3e-15 Score=150.45 Aligned_cols=162 Identities=19% Similarity=0.220 Sum_probs=118.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC------CcEEEEec
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK------FDIYDMEL 274 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~------~~v~~l~~ 274 (455)
..|.+|++++|.+++++.+...+. . |. ..++||+||||||||++++++|+.++ ..+..+++
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~----~-------~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLK----S-------AN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTT----C-------TT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHh----c-------CC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 468899999999998887766553 1 11 23499999999999999999999864 46778887
Q ss_pred cccCChHHHHHHH---Hh---------------hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc
Q 047029 275 ASLRSNSDLRRLL---VS---------------TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW 336 (455)
Q Consensus 275 ~~~~~~~~l~~ll---~~---------------~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 336 (455)
++......++..+ .. ...+.||+|||+|.+.. ...+.|+..++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 98 SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------DAQSALRRTMETYS 161 (353)
T ss_dssp SSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH----------------HHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH----------------HHHHHHHHHHHhcC
Confidence 7654444443332 11 12457999999998743 23456777776542
Q ss_pred ccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 337 SSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 337 ~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
....+|++||+++.+++++.+ |+. .++++.|+.++...++...+...+..+.++.
T Consensus 162 ----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~ 216 (353)
T 1sxj_D 162 ----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGV 216 (353)
T ss_dssp ----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred ----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 346677889999999999999 886 8999999999999999888765544444433
No 52
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=3.1e-15 Score=150.71 Aligned_cols=165 Identities=18% Similarity=0.120 Sum_probs=115.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEE
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYD 271 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~ 271 (455)
.+...+++++|.++..+.+.+.+...+. ...+++++|+||||||||++++++++.+ +..++.
T Consensus 13 ~~~~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 83 (387)
T 2v1u_A 13 LPDYVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIY 83 (387)
T ss_dssp STTCCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3444568899998888888776643221 1336689999999999999999999998 788888
Q ss_pred EeccccCCh----------------------HH-HHHHHHh---hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhH
Q 047029 272 MELASLRSN----------------------SD-LRRLLVS---TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTL 325 (455)
Q Consensus 272 l~~~~~~~~----------------------~~-l~~ll~~---~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l 325 (455)
+++....+. .. +..++.. ...+.||+|||+|.+... ...+..+
T Consensus 84 i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~-----------~~~~~~l 152 (387)
T 2v1u_A 84 VNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKR-----------PGGQDLL 152 (387)
T ss_dssp EETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHS-----------TTHHHHH
T ss_pred EECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhccc-----------CCCChHH
Confidence 887654321 12 2222222 234789999999988540 0123455
Q ss_pred hhhhhhhhcccccCCCceEEEEEcCCC---CCCCccccCCCceeE-EEEeCCCCHHHHHHHHHHhhcc
Q 047029 326 SGLLNFVDGLWSSCGDERIIVFTTNYK---ERLDPALLRPGRMDM-HIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 326 s~LL~~ldg~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~d~-~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
..+++.++.... +.++.+|++||.+ +.+++++.+ ||.. .++++.++.++...++..++..
T Consensus 153 ~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 153 YRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp HHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred HhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 555655543310 2467899999987 788999998 8875 8999999999999999988753
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=5.2e-15 Score=145.93 Aligned_cols=158 Identities=15% Similarity=0.226 Sum_probs=115.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~ 275 (455)
..|.+|++++|.++.++.+.+.+.. |. ..++|||||||||||++++++|+.+. ..++.++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~ 85 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------GS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS 85 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------TC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------CC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc
Confidence 5678999999999988887766542 21 22599999999999999999999973 347777766
Q ss_pred ccCChHHHHHHHHh----h----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE
Q 047029 276 SLRSNSDLRRLLVS----T----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF 347 (455)
Q Consensus 276 ~~~~~~~l~~ll~~----~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~ 347 (455)
+..+...++..+.. . ..+.||+|||+|.+.. ...+.|+..++.. +....+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~L~~~le~~----~~~~~~i~ 145 (327)
T 1iqp_A 86 DERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ----------------DAQQALRRTMEMF----SSNVRFIL 145 (327)
T ss_dssp CHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------------HHHHHHHHHHHHT----TTTEEEEE
T ss_pred ccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------------HHHHHHHHHHHhc----CCCCeEEE
Confidence 54222222222211 1 3578999999998732 2345667666643 24578888
Q ss_pred EcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCc
Q 047029 348 TTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSM 394 (455)
Q Consensus 348 TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l 394 (455)
+||.++.+++++.+ |+. .++++.++.++...++..++...+...
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEE
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999998 886 799999999999999988876544333
No 54
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=1.4e-15 Score=151.27 Aligned_cols=176 Identities=13% Similarity=0.205 Sum_probs=116.0
Q ss_pred cCCCCCCcccc-cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 200 LDHPSTFDTLA-MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 200 ~~~p~tfd~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
+.+..+|++++ |... ... ...+..+...+ ....++++||||||||||++++++++.+ +.+++.+++.
T Consensus 4 l~~~~~f~~fv~g~~~-~~a-~~~~~~~~~~~-------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGN-RLA-YEVVKEALENL-------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CCTTCCSSSCCCCTTT-HHH-HHHHHHHHHTT-------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCCcccCCCCCcH-HHH-HHHHHHHHhCc-------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 56677999997 4332 211 22233333332 1235689999999999999999999999 8999999887
Q ss_pred ccCCh-------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEE
Q 047029 276 SLRSN-------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFT 348 (455)
Q Consensus 276 ~~~~~-------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~T 348 (455)
.+... ...........++.||||||++.+.. .......++..++..... +.++|+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~--------------~~~~~~~l~~~l~~~~~~--~~~iii~~ 138 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG--------------KERTQIEFFHIFNTLYLL--EKQIILAS 138 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT--------------CHHHHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC--------------ChHHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 65210 01111122233578999999998742 012334455555544332 34566666
Q ss_pred cCCCC---CCCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 349 TNYKE---RLDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 349 TN~~~---~Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
+|.+. .++++|++ ||+ ..+++++ +.+++..+++.++...+..+.+++.+.+.
T Consensus 139 ~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~ 195 (324)
T 1l8q_A 139 DRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLL 195 (324)
T ss_dssp SSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 66665 68999999 886 7899999 99999999999987655555555544443
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.62 E-value=1.8e-14 Score=144.96 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=119.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|.++.++.+.+.+.. | ..+..+||+||||||||++++++|+.++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4578899999999988888776641 1 22457999999999999999999999854
Q ss_pred -----------cEEEEeccccCChHHHHHHHHhhC------CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 268 -----------DIYDMELASLRSNSDLRRLLVSTG------NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 268 -----------~v~~l~~~~~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+++.++.........++.++.... .+.||+|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~----------------~~~~~Ll~ 141 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR----------------HSFNALLK 141 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH----------------HHHHHHHH
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH----------------HHHHHHHH
Confidence 345555443223345666665432 468999999998732 34566777
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchH
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFD 396 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ 396 (455)
.++.. +..+++|++||.+..+++++.+ |+ ..++++.|+.++...++..++...+....+
T Consensus 142 ~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~ 200 (373)
T 1jr3_A 142 TLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 200 (373)
T ss_dssp HHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred HHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 77653 3568889999999999999998 77 689999999999999999888655444433
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.61 E-value=1.5e-14 Score=146.90 Aligned_cols=174 Identities=20% Similarity=0.246 Sum_probs=112.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHh-----------------hhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYS-----------------RVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~-----------------~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.++|++++|+.|...+...+.+..... .-....+.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999988754443322110 011234668999999999999999999999999999
Q ss_pred EEeccccCC--------hHHHHHHHHhh------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc
Q 047029 271 DMELASLRS--------NSDLRRLLVST------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW 336 (455)
Q Consensus 271 ~l~~~~~~~--------~~~l~~ll~~~------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~ 336 (455)
.+++..+.. ...+..++... ..++||||||||.+...+ .......+.......+.|+..||+..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~--~~~~~~~~~~~~~~~~~Ll~~le~~~ 179 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLS--ENRSITRDVSGEGVQQALLKIVEGSL 179 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----------------CHHHHHHHHHHHHCCE
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhc--CCCceecccchHHHHHHHHHHhhccc
Confidence 999887631 23344554432 257899999999986421 11111111122236778888888642
Q ss_pred c---c--------------CCCceEEEEEcCCC-----------------------------------------CCCCcc
Q 047029 337 S---S--------------CGDERIIVFTTNYK-----------------------------------------ERLDPA 358 (455)
Q Consensus 337 ~---~--------------~~~~~ivI~TTN~~-----------------------------------------~~Ld~a 358 (455)
- . ...++++|+|||.. ..+.|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~ 259 (376)
T 1um8_A 180 VNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPE 259 (376)
T ss_dssp EC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHH
T ss_pred eecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChH
Confidence 0 0 01346778887721 124566
Q ss_pred ccCCCceeEEEEeCCCCHHHHHHHHHH
Q 047029 359 LLRPGRMDMHIHMSYLTPGGFKILAFN 385 (455)
Q Consensus 359 llRpGR~d~~I~~~~p~~~~~~~L~~~ 385 (455)
|+. |++..+.|+.++.++...++..
T Consensus 260 l~~--R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 260 LIG--RLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred Hhc--CCCceeeccCCCHHHHHHHHhh
Confidence 666 9989999999999998888863
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.8e-14 Score=145.65 Aligned_cols=151 Identities=15% Similarity=0.231 Sum_probs=112.0
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----------CCcEEEEecc
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----------KFDIYDMELA 275 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----------~~~v~~l~~~ 275 (455)
++++|.++..+++.+.+..++.. ..+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999998888765543 225689999999999999999999998 8899999876
Q ss_pred ccC-Ch-----------------------HH-HHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhh-Hhhh
Q 047029 276 SLR-SN-----------------------SD-LRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVT-LSGL 328 (455)
Q Consensus 276 ~~~-~~-----------------------~~-l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~-ls~L 328 (455)
... +. .. +..++.... .+.||+|||+|.+.. ...... +..|
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~------------~~~~~~~l~~l 158 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK------------RRGGDIVLYQL 158 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH------------STTSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc------------CCCCceeHHHH
Confidence 543 21 11 222222222 233999999998853 111223 4444
Q ss_pred hhhhhcccccCCCceEEEEEcCCC---CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 329 LNFVDGLWSSCGDERIIVFTTNYK---ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 329 L~~ldg~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
+... .++.+|+|||.+ +.+++++.+ ||...|++++++.++...++..++.
T Consensus 159 ~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 159 LRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp HTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred hcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 4432 457889999977 788999998 8877999999999999999998875
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.60 E-value=9.2e-14 Score=139.21 Aligned_cols=178 Identities=21% Similarity=0.226 Sum_probs=123.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN 280 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~ 280 (455)
-.|.+|+.++|.+.+++.+...+..-..+ | .++..++|+||||||||||++++|+.++.++...........
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMR-------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 45779999999877766655444321111 2 234679999999999999999999999998877766555556
Q ss_pred HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc------cc--------CCCceEEE
Q 047029 281 SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW------SS--------CGDERIIV 346 (455)
Q Consensus 281 ~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~------~~--------~~~~~ivI 346 (455)
.++..++.....+.|++|||++.+.. .....|+..++... .. .-....++
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~l~~----------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHRLNK----------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGGCCH----------------HHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred HHHHHHHHHccCCCEEEEcchhhcCH----------------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 67777666666788999999998743 11122222222110 00 00235677
Q ss_pred EEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHH-HHHhhcc
Q 047029 347 FTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDE-IEELIKE 404 (455)
Q Consensus 347 ~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~e-i~~ll~~ 404 (455)
.+||.+..|++++++ ||...+.+++++.+++..++++........+.++ +..++..
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHT
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh
Confidence 799999999999999 9999999999999999999998876544444433 3333333
No 59
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.59 E-value=1.2e-14 Score=152.26 Aligned_cols=146 Identities=19% Similarity=0.220 Sum_probs=105.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..|+.++|.++..+.+++.+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 466799999999888887776541 235689999999999999999999997 778888
Q ss_pred Eecccc-C--ChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 272 MELASL-R--SNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 272 l~~~~~-~--~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
++++.. . ....++.++... ..+.||||| . . . ...+.|+..++. +.+.+|
T Consensus 242 l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~---~------------~---~a~~~L~~~L~~------g~v~vI 295 (468)
T 3pxg_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID--A---A------------I---DASNILKPSLAR------GELQCI 295 (468)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC--C--------------------------CCCTTS------SSCEEE
T ss_pred eeCCccccchHHHHHHHHHHHHHhcCCeEEEEe--C---c------------h---hHHHHHHHhhcC------CCEEEE
Confidence 887621 1 124556666544 357899999 1 0 0 122334444431 468899
Q ss_pred EEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 347 FTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 347 ~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
++||..+ .+|+++.| ||.. |.++.|+.+++..+++.++..
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 9999887 69999999 9984 999999999999999988765
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.59 E-value=2.2e-15 Score=135.84 Aligned_cols=144 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEE
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDM 272 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l 272 (455)
|.+|++++|.+...+.+.+.+.. ..++++||+||||||||++++++|+.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 67899999998877777665531 236689999999999999999999997 7788888
Q ss_pred eccccC----C----hHHHHHHHHh---hCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 273 ELASLR----S----NSDLRRLLVS---TGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 273 ~~~~~~----~----~~~l~~ll~~---~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
++..+. . ...+..++.. ...+.||+|||+|.+..... . ..........|...++. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~--~-----~~~~~~~~~~l~~~~~~------~ 151 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGA--V-----AEGALDAGNILKPMLAR------G 151 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSS--S-----CTTSCCTHHHHHHHHHT------T
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccc--c-----cccchHHHHHHHHHHhc------C
Confidence 776542 1 1224444432 34678999999998853110 0 00111222333333332 4
Q ss_pred ceEEEEEcCCCC-----CCCccccCCCceeEEEEeCCCC
Q 047029 342 ERIIVFTTNYKE-----RLDPALLRPGRMDMHIHMSYLT 375 (455)
Q Consensus 342 ~~ivI~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~ 375 (455)
.+++|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 577889998765 68999999 9984 9999885
No 61
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.58 E-value=1.9e-14 Score=149.67 Aligned_cols=172 Identities=17% Similarity=0.282 Sum_probs=112.4
Q ss_pred ccCCCCCCcccc-cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEE
Q 047029 199 NLDHPSTFDTLA-MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDM 272 (455)
Q Consensus 199 ~~~~p~tfd~l~-g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l 272 (455)
.+++..+|++++ |..... ....+..+...+ |. ..+++||||||||||+|++++|+++ +.+++.+
T Consensus 97 ~l~~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 97 PLNPDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCCTTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 466667999988 543322 223333333322 21 5689999999999999999999998 8889988
Q ss_pred eccccCCh-------HHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceE
Q 047029 273 ELASLRSN-------SDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERI 344 (455)
Q Consensus 273 ~~~~~~~~-------~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~i 344 (455)
++..+... .....+..... ++.||||||++.+.. ...+...|+..++.+... +..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~--------------~~~~q~~l~~~l~~l~~~--~~~i 230 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG--------------KTGVQTELFHTFNELHDS--GKQI 230 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS--------------CHHHHHHHHHHHHHHHTT--TCEE
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC--------------ChHHHHHHHHHHHHHHHC--CCeE
Confidence 87764210 01112222334 789999999998742 012334455555554332 3345
Q ss_pred EEEEcCCCCC---CCccccCCCcee--EEEEeCCCCHHHHHHHHHHhhcccCCCchHHH
Q 047029 345 IVFTTNYKER---LDPALLRPGRMD--MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEI 398 (455)
Q Consensus 345 vI~TTN~~~~---Ld~allRpGR~d--~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei 398 (455)
||.|.+.+.. ++++|++ ||. ..+.++.|+.+++..++...+...+..+.+++
T Consensus 231 Iitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~ 287 (440)
T 2z4s_A 231 VICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEV 287 (440)
T ss_dssp EEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTH
T ss_pred EEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5544444544 8899999 886 78999999999999999998865444444333
No 62
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=6.4e-15 Score=147.18 Aligned_cols=154 Identities=21% Similarity=0.218 Sum_probs=101.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC-------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF------------- 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~------------- 267 (455)
..|.+|++++|.+.+++.+...+ ..+ ...++|||||||||||++|+++|+.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~----~~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA----VDP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH----HCG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHh----hCC---------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 45678999999988776542221 111 1447999999999999999999999863
Q ss_pred --------------------cEEEEeccccCChHH------HHHHHHhh-----------CCceEEEEecccchhhhhhh
Q 047029 268 --------------------DIYDMELASLRSNSD------LRRLLVST-----------GNRSILVIEDIDCSIELENR 310 (455)
Q Consensus 268 --------------------~v~~l~~~~~~~~~~------l~~ll~~~-----------~~~~IL~iDEiD~l~~~~~~ 310 (455)
+++.+..+. +... +.+.+... ..++||||||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 122111110 1111 12222111 1368999999998743
Q ss_pred cCCCCCCCCcchhhHhhhhhhhhcc---cccC------CCceEEEEEcCCCC-CCCccccCCCceeEEEEeCCC-CHHHH
Q 047029 311 QCGGGYDENNSQVTLSGLLNFVDGL---WSSC------GDERIIVFTTNYKE-RLDPALLRPGRMDMHIHMSYL-TPGGF 379 (455)
Q Consensus 311 ~~~~~~~~~~~~~~ls~LL~~ldg~---~~~~------~~~~ivI~TTN~~~-~Ld~allRpGR~d~~I~~~~p-~~~~~ 379 (455)
..+..|+..++.- .... +..+++|+|||..+ .++++|++ ||+.++++++| +.+.+
T Consensus 159 ------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~ 224 (350)
T 1g8p_A 159 ------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETR 224 (350)
T ss_dssp ------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHH
T ss_pred ------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHH
Confidence 2345566666531 1111 13578899999754 89999999 99999999999 67777
Q ss_pred HHHHHHhh
Q 047029 380 KILAFNYL 387 (455)
Q Consensus 380 ~~L~~~~l 387 (455)
..|++..+
T Consensus 225 ~~il~~~~ 232 (350)
T 1g8p_A 225 VEVIRRRD 232 (350)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78887754
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.56 E-value=2.6e-14 Score=160.22 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=104.1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEE
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDM 272 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l 272 (455)
|.+|+.++|.++..+.+++.+. + ..++++||+||||||||++++++|+.+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~----~---------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL----R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH----C---------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHh----c---------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 5689999999887777776553 1 235689999999999999999999998 8889999
Q ss_pred eccccCC--------hHHHHHHHHhh---CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 273 ELASLRS--------NSDLRRLLVST---GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 273 ~~~~~~~--------~~~l~~ll~~~---~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
+++.+.. ...+..++... ..++||||||+|.+.+..... ......+.|...++. +
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--------g~~~~~~~L~~~l~~------~ 298 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE--------GAVDAGNMLKPALAR------G 298 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------HHHHHT------T
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc--------chHHHHHHHHHHHhC------C
Confidence 8877632 23456666544 357899999999986421110 011112223333322 4
Q ss_pred ceEEEEEcCCCC----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 342 ERIIVFTTNYKE----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 342 ~~ivI~TTN~~~----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
++.+|++||.++ .+|++|.| ||+. |.++.|+.+++..+++.++.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 567888888664 47999999 9986 99999999999999987665
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.1e-14 Score=141.62 Aligned_cols=130 Identities=12% Similarity=0.178 Sum_probs=95.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc----------CCcEEEEeccccCC----------------------hHHHHHHH
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYDMELASLRS----------------------NSDLRRLL 287 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~l~~~~~~~----------------------~~~l~~ll 287 (455)
.+.++|||||||||||++++++++++ ++.++.++|..+.+ ...+.+.|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 47799999999999999999999999 35677888765422 23456666
Q ss_pred Hhh----CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCC----Cccc
Q 047029 288 VST----GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERL----DPAL 359 (455)
Q Consensus 288 ~~~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~L----d~al 359 (455)
... ..+.|++|||+|.+. .+..+..|++... .....++||+++|..+.. ++++
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~---------------~q~~L~~l~~~~~----~~~s~~~vI~i~n~~d~~~~~L~~~v 184 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL---------------SEKILQYFEKWIS----SKNSKLSIICVGGHNVTIREQINIMP 184 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC---------------CTHHHHHHHHHHH----CSSCCEEEEEECCSSCCCHHHHHTCH
T ss_pred HHhhhccCCceEEEEecHHHhh---------------cchHHHHHHhccc----ccCCcEEEEEEecCcccchhhcchhh
Confidence 543 457899999999873 1334444554322 122468899999988653 4555
Q ss_pred cCCCcee-EEEEeCCCCHHHHHHHHHHhhccc
Q 047029 360 LRPGRMD-MHIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 360 lRpGR~d-~~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
.+ ||. ..|+|+.++.++...|+++.+...
T Consensus 185 ~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 185 SL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 66 886 589999999999999999888653
No 65
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.2e-14 Score=141.74 Aligned_cols=158 Identities=13% Similarity=0.186 Sum_probs=109.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-CC------------
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-KF------------ 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-~~------------ 267 (455)
-.|.+|++++|.+++++.+.+.+. ..|. .+. ++|+||||||||++++++|+.+ +.
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~----------~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD----------QPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT----------CTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh----------hCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 568999999999888776655441 1122 233 9999999999999999999964 21
Q ss_pred ----------------cEEEEeccccCChH--HHHHHHHh----------------hCCceEEEEecccchhhhhhhcCC
Q 047029 268 ----------------DIYDMELASLRSNS--DLRRLLVS----------------TGNRSILVIEDIDCSIELENRQCG 313 (455)
Q Consensus 268 ----------------~v~~l~~~~~~~~~--~l~~ll~~----------------~~~~~IL~iDEiD~l~~~~~~~~~ 313 (455)
+++.++.+...... .+++.+.. ..++.|++|||++.+-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~------- 148 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK------- 148 (354)
T ss_dssp ----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-------
T ss_pred cccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------
Confidence 12333332221111 34444432 22567999999998521
Q ss_pred CCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCC
Q 047029 314 GGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHS 393 (455)
Q Consensus 314 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~ 393 (455)
...+.|+..++... .+..+|++||.++.+.+++.+ |+ ..++|+.|+.++...+++..+..++..
T Consensus 149 ---------~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 149 ---------DAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp ---------HHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred ---------HHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 33455666666542 357889999999999999999 88 789999999999999999887655433
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=6.4e-14 Score=140.83 Aligned_cols=163 Identities=16% Similarity=0.210 Sum_probs=114.9
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc------CCcEEEEe
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------KFDIYDME 273 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l------~~~v~~l~ 273 (455)
+.+...++.++|.++..+.+.+.+...+.. ..++.++|+||||||||++++++++.+ +..++.++
T Consensus 13 l~~~~~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 13 LLPDYIPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp GSSSCCCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCccCCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 344455688999988888877765432221 235689999999999999999999998 88888888
Q ss_pred ccccCC----------------------hHH-HH---HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhh
Q 047029 274 LASLRS----------------------NSD-LR---RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSG 327 (455)
Q Consensus 274 ~~~~~~----------------------~~~-l~---~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~ 327 (455)
+....+ ... +. ..+.....+.||+|||++.+.. ......+..
T Consensus 84 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~------------~~~~~~l~~ 151 (386)
T 2qby_A 84 TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK------------KYNDDILYK 151 (386)
T ss_dssp HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH------------SSCSTHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc------------cCcCHHHHH
Confidence 653211 122 12 2222333489999999998854 111245666
Q ss_pred hhhhhhcccccCCCceEEEEEcCCC---CCCCccccCCCcee-EEEEeCCCCHHHHHHHHHHhhc
Q 047029 328 LLNFVDGLWSSCGDERIIVFTTNYK---ERLDPALLRPGRMD-MHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 328 LL~~ldg~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~d-~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
++..++.. ...++.+|++||.+ +.+++++.+ ||. ..|+++.++.++..+++..++.
T Consensus 152 l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 152 LSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred Hhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 77776654 12467888899876 568888888 665 4899999999999999998775
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.1e-13 Score=138.68 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=112.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC-----CcEEEEecc
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK-----FDIYDMELA 275 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~-----~~v~~l~~~ 275 (455)
..|.+|++++|++.+++.|...+. . |.. + ++|||||||||||++++++|+.+. ..+..++.+
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~----~-------g~~-~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVD----E-------GKL-P-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHH----T-------TCC-C-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHh----c-------CCC-c-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 467899999999887776665543 1 222 2 399999999999999999999973 246667766
Q ss_pred ccCChHHHHHHHHhh--------CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEE
Q 047029 276 SLRSNSDLRRLLVST--------GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVF 347 (455)
Q Consensus 276 ~~~~~~~l~~ll~~~--------~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~ 347 (455)
...+...+++.+... ..+.|++|||+|.+.. ...+.|+..++... ....+|+
T Consensus 86 ~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~----------------~~~~~L~~~le~~~----~~~~~il 145 (340)
T 1sxj_C 86 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN----------------AAQNALRRVIERYT----KNTRFCV 145 (340)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------------HHHHHHHHHHHHTT----TTEEEEE
T ss_pred ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------------HHHHHHHHHHhcCC----CCeEEEE
Confidence 544444455443221 2368999999998732 23455666666432 4567888
Q ss_pred EcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccC
Q 047029 348 TTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKS 391 (455)
Q Consensus 348 TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~ 391 (455)
+||.+..+.+++.+ |+. .+.+..++.++....+...+....
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999 885 789999999998888887775433
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=1.2e-13 Score=152.92 Aligned_cols=159 Identities=24% Similarity=0.283 Sum_probs=111.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 35689999999888887776553 2246789999999999999999999987 667777
Q ss_pred EeccccCC--------hHHHHHHHHhhC--CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCC
Q 047029 272 MELASLRS--------NSDLRRLLVSTG--NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGD 341 (455)
Q Consensus 272 l~~~~~~~--------~~~l~~ll~~~~--~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~ 341 (455)
+++..+.. ...++.++.... .++||||||+|.+.+... ..........+| ..+... +
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~--------~~~~~~~~~~~L---~~~l~~--~ 314 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA--------ASGGQVDAANLI---KPLLSS--G 314 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCC--------SSSCHHHHHHHH---SSCSSS--C
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCC--------CCcchHHHHHHH---HHHHhC--C
Confidence 77665421 245667776554 379999999999864110 001111222222 222222 4
Q ss_pred ceEEEEEcCCC-----CCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 342 ERIIVFTTNYK-----ERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 342 ~~ivI~TTN~~-----~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
++.+|++||.+ -.+|++|.| ||+ .|.++.|+.+++..+++.+...
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 57788888864 357899999 998 6999999999999999876643
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=7.3e-14 Score=154.49 Aligned_cols=154 Identities=17% Similarity=0.265 Sum_probs=113.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC----CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCCh---
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSN--- 280 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~--- 280 (455)
.++|.++.++.+...+... +.|.. +..++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 4667777777776655422 22332 22369999999999999999999999999999998876321
Q ss_pred ----------------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-c-cC---
Q 047029 281 ----------------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-S-SC--- 339 (455)
Q Consensus 281 ----------------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~-~~--- 339 (455)
..+...+.. ..++||||||||.+.+ ..++.|+..||... . ..
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~~----------------~~~~~Ll~~le~~~~~~~~g~~ 593 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAHP----------------DVFNILLQVMDNGTLTDNNGRK 593 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSCH----------------HHHHHHHHHHHHSEEEETTTEE
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccCH----------------HHHHHHHHHhcCcEEEcCCCCE
Confidence 123333333 4579999999997632 46677888887321 1 11
Q ss_pred --CCceEEEEEcCCCC-------------------------CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 340 --GDERIIVFTTNYKE-------------------------RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 340 --~~~~ivI~TTN~~~-------------------------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
..+.+||+|||... .++|+|++ ||+..|.|++++.+++..|+..++.
T Consensus 594 ~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 594 ADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 13578999999753 57888888 9999999999999999999998886
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.53 E-value=3.3e-14 Score=137.23 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=101.8
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---CcEEEEeccccCCh
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMELASLRSN 280 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~~~~~~~ 280 (455)
.+|++++|.....+.+++.+..... .+.++||+||||||||++|+++++.+. .+++.++++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~- 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE- 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-
T ss_pred cccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-
Confidence 4799999999988888887765432 256899999999999999999999985 6899999987632
Q ss_pred HHHHH-HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-cc---
Q 047029 281 SDLRR-LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-SS--- 338 (455)
Q Consensus 281 ~~l~~-ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~~--- 338 (455)
..+.. +|. ....+++|||||||.+.. .....|+..++... ..
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~----------------~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM----------------MVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH----------------HHHHHHHHHHHHCEECCCCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH----------------HHHHHHHHHHHhCCeecCCC
Confidence 22222 211 113467999999998742 23455666665321 10
Q ss_pred ---CCCceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCCH--HHHHHHHHHhhc
Q 047029 339 ---CGDERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 339 ---~~~~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
...++.+|+|||.. ..++++|.+ ||. ..|.+|.... +....++..++.
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHH
Confidence 11346788999974 357888888 885 5677776654 556667776654
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.53 E-value=9.8e-14 Score=153.58 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=106.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----------CCcEEE
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----------KFDIYD 271 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----------~~~v~~ 271 (455)
.|..|+.++|.++..+.+++.+. ...+.++||+||||||||++|+++|+.+ +..++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~-------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHh-------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 45679999999999888877654 1336689999999999999999999997 788888
Q ss_pred Eecccc---CChHHHHHHHHhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEE
Q 047029 272 MELASL---RSNSDLRRLLVST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIV 346 (455)
Q Consensus 272 l~~~~~---~~~~~l~~ll~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI 346 (455)
+++..- .....++.++... ..++||||| .. ....+.|+..++ .+++.+|
T Consensus 242 ~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~------------------~~~~~~L~~~l~------~~~v~~I 295 (758)
T 3pxi_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID--AA------------------IDASNILKPSLA------RGELQCI 295 (758)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC--C--------------------------CCCTT------SSSCEEE
T ss_pred ecccccccchHHHHHHHHHHHHHhcCCEEEEEc--Cc------------------hhHHHHHHHHHh------cCCEEEE
Confidence 877211 1223566666544 468999999 10 012233444443 1568899
Q ss_pred EEcCCCC-----CCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 347 FTTNYKE-----RLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 347 ~TTN~~~-----~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
++||..+ .+|+++.| ||. .|.++.|+.+++..|++.++..
T Consensus 296 ~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred eCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999888 79999999 995 5999999999999999987764
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.52 E-value=4.6e-13 Score=135.18 Aligned_cols=165 Identities=17% Similarity=0.086 Sum_probs=117.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEecc
Q 047029 200 LDHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELA 275 (455)
Q Consensus 200 ~~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~ 275 (455)
+.+...++.++|.++..+.+.+.+...+.+.. +..+.++|+||||||||++++++++.+ +..++.+++.
T Consensus 10 l~~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 10 FSPSYVPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp GSTTCCCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred cCCccCCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 33344558899999999999888876554321 112389999999999999999999999 5778888876
Q ss_pred ccCChH----------------------H----HHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhh
Q 047029 276 SLRSNS----------------------D----LRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLL 329 (455)
Q Consensus 276 ~~~~~~----------------------~----l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL 329 (455)
...+.. . +...+.....+.||+|||+|.+. ...+..|+
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~----------------~~~~~~L~ 146 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA----------------PDILSTFI 146 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC----------------HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc----------------hHHHHHHH
Confidence 543211 1 11222233457899999999761 23455666
Q ss_pred hhhhcccccCCCceEEEEEcCCC---CCCCccccCCCceeE-EEEeCCCCHHHHHHHHHHhhcc
Q 047029 330 NFVDGLWSSCGDERIIVFTTNYK---ERLDPALLRPGRMDM-HIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 330 ~~ldg~~~~~~~~~ivI~TTN~~---~~Ld~allRpGR~d~-~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
..++........++.+|++||.+ +.+++.+.+ ||.. .|++++++.++...++...+..
T Consensus 147 ~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 147 RLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp HHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 66654422111357888999987 778888888 8775 8999999999999999888764
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-13 Score=152.81 Aligned_cols=156 Identities=15% Similarity=0.215 Sum_probs=113.2
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCC---Cc-eeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAW---KR-GYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~---~r-g~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
+.++|.+..++.+.+.+..... |... +. ++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~--------~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA--------GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT--------TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred CcCcChHHHHHHHHHHHHHHHc--------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 4578888888888777764321 2221 22 69999999999999999999998 68899999988643
Q ss_pred h-----HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc-------CCCceEEEE
Q 047029 280 N-----SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS-------CGDERIIVF 347 (455)
Q Consensus 280 ~-----~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~-------~~~~~ivI~ 347 (455)
. ..+...+.. ..++||||||||.+. ...++.|+..||...-. ...+.+||+
T Consensus 563 ~~~~~~~~l~~~~~~-~~~~vl~lDEi~~~~----------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 625 (758)
T 3pxi_A 563 KHSTSGGQLTEKVRR-KPYSVVLLDAIEKAH----------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIM 625 (758)
T ss_dssp SCCCC---CHHHHHH-CSSSEEEEECGGGSC----------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEE
T ss_pred ccccccchhhHHHHh-CCCeEEEEeCccccC----------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEE
Confidence 2 233333332 457899999999763 24567788888752211 124579999
Q ss_pred EcCCCCC------------CCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcc
Q 047029 348 TTNYKER------------LDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKI 389 (455)
Q Consensus 348 TTN~~~~------------Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~ 389 (455)
|||.+.. +.|+|+. ||+..|.|++|+.+++..|+..++..
T Consensus 626 ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 626 TSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp EESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred eCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 9996544 7788888 99999999999999999999988754
No 74
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=6.7e-14 Score=123.02 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=86.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLL 287 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll 287 (455)
+++|.....+++.+.+..+... +.++||+||||||||++|+++++..+ +++.++++.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-----------~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-----------TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-----------SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 3667777888888887755422 56899999999999999999999988 888888876532 1133344
Q ss_pred HhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC-CCC----CccccCC
Q 047029 288 VSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK-ERL----DPALLRP 362 (455)
Q Consensus 288 ~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~-~~L----d~allRp 362 (455)
. ...+++|||||||.+.. .....|+..++... ..++.+|+|||.+ +.+ ++.|..
T Consensus 72 ~-~a~~~~l~lDei~~l~~----------------~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~- 130 (143)
T 3co5_A 72 Q-KAEGGVLYVGDIAQYSR----------------NIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAG- 130 (143)
T ss_dssp H-HTTTSEEEEEECTTCCH----------------HHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHH-
T ss_pred H-hCCCCeEEEeChHHCCH----------------HHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHH-
Confidence 3 34578999999998743 23344666666432 2456788888853 332 233333
Q ss_pred Cce-eEEEEeCCC
Q 047029 363 GRM-DMHIHMSYL 374 (455)
Q Consensus 363 GR~-d~~I~~~~p 374 (455)
|+ ...|++|+.
T Consensus 131 -rl~~~~i~lPpL 142 (143)
T 3co5_A 131 -LFSESVVRIPPL 142 (143)
T ss_dssp -HSSSEEEEECCC
T ss_pred -HhcCcEEeCCCC
Confidence 43 345666653
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.42 E-value=5.2e-13 Score=117.47 Aligned_cols=112 Identities=12% Similarity=0.101 Sum_probs=80.4
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLR 284 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~ 284 (455)
.++|.....+++++.+..... .+..+||+||||||||++|+++++.. +.+++ ++++.+.......
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 467777777777777764422 25689999999999999999999987 77888 9998876555555
Q ss_pred HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 285 RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 285 ~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
..+... .+++|||||||.+.. .....|+..|... ..++.+|+|||.+
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~~----------------~~q~~Ll~~l~~~----~~~~~~I~~t~~~ 116 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLTR----------------EQQYHLVQLQSQE----HRPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSCH----------------HHHHHHHHHHHSS----SCSSCEEEEESSC
T ss_pred cHHHHc-CCcEEEEcChHHCCH----------------HHHHHHHHHHhhc----CCCEEEEEECCcC
Confidence 555544 467999999998743 2345567766433 2345688888864
No 76
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.41 E-value=6.6e-12 Score=125.67 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=96.0
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC------------------------CcEEEEecc---ccCChHHHHHHHHhhC-
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK------------------------FDIYDMELA---SLRSNSDLRRLLVSTG- 291 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~------------------------~~v~~l~~~---~~~~~~~l~~ll~~~~- 291 (455)
.+.+||||||||||||++|+++|+.+. .+++.++.. .-.+...++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 356899999999999999999999884 245556543 2223456677665442
Q ss_pred -----CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCcee
Q 047029 292 -----NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMD 366 (455)
Q Consensus 292 -----~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d 366 (455)
.+.|++|||+|.+.. ...+.|+..++.- +.+.++|++||.++.+.|++++ |+
T Consensus 103 ~~~~~~~kvviIdead~l~~----------------~a~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc- 159 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD----------------AAANALLKTLEEP----PAETWFFLATREPERLLATLRS--RC- 159 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH----------------HHHHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TS-
T ss_pred ccccCCcEEEEECchhhcCH----------------HHHHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cc-
Confidence 468999999998732 3456778887652 3568889999999999999999 87
Q ss_pred EEEEeCCCCHHHHHHHHHHhh
Q 047029 367 MHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l 387 (455)
..++|+.|+.++....+....
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC
T ss_pred eeeeCCCCCHHHHHHHHHHhc
Confidence 479999999999888887765
No 77
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.38 E-value=1.7e-12 Score=136.77 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC--cEEEEeccccCChHHH--
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELASLRSNSDL-- 283 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~~~~~~~~l-- 283 (455)
.++|.+++++.+...+.. +.++||+||||||||++|+++|+.++. ++..+.+.. .+.+++
T Consensus 23 ~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcC
Confidence 467777777766554431 458999999999999999999999853 334443321 111111
Q ss_pred ---------HHHHHhhC-----CceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhc-------ccccCCCc
Q 047029 284 ---------RRLLVSTG-----NRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDG-------LWSSCGDE 342 (455)
Q Consensus 284 ---------~~ll~~~~-----~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg-------~~~~~~~~ 342 (455)
...+.... .++|||||||+.+. ..+.+.|+..|+. ..... +.
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~----------------~~~q~~LL~~lee~~v~i~G~~~~~-~~ 149 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG----------------PAILNTLLTAINERQFRNGAHVEKI-PM 149 (500)
T ss_dssp CBC----------CBCCTTSGGGCSEEEEESGGGCC----------------HHHHHHHHHHHHSSEEECSSSEEEC-CC
T ss_pred cccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc----------------HHHHHHHHHHHHHHhccCCCCcCCc-ch
Confidence 11121111 35699999998753 2456777777752 21111 23
Q ss_pred eEEEEEcCCCCC---CCccccCCCceeEEEEeCCCCH-HHHHHHHHHhhc
Q 047029 343 RIIVFTTNYKER---LDPALLRPGRMDMHIHMSYLTP-GGFKILAFNYLK 388 (455)
Q Consensus 343 ~ivI~TTN~~~~---Ld~allRpGR~d~~I~~~~p~~-~~~~~L~~~~l~ 388 (455)
+++|+|||.... +.+++++ ||.++|++++|+. +++..|++....
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 467888885322 4459999 9999999999997 678888877653
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.37 E-value=1.5e-12 Score=128.90 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=100.7
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLR 284 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~ 284 (455)
+++|.....+++.+.+.... ..+.++||+||||||||++|+++++.. +.+++.++|+.+.. ..+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHH
Confidence 57787777788877776432 225689999999999999999999976 57899999987632 1122
Q ss_pred H-HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-c------cC
Q 047029 285 R-LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-S------SC 339 (455)
Q Consensus 285 ~-ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~------~~ 339 (455)
. +|. ....+++|||||||.+.. .....|+..++... . ..
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~----------------~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP----------------LMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH----------------HHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH----------------HHHHHHHHHHhcCEeeecCCcccc
Confidence 1 111 112357999999998743 23455666666432 1 11
Q ss_pred CCceEEEEEcCCC-------CCCCccccCCCce-eEEEEeCCCC--HHHHHHHHHHhhc
Q 047029 340 GDERIIVFTTNYK-------ERLDPALLRPGRM-DMHIHMSYLT--PGGFKILAFNYLK 388 (455)
Q Consensus 340 ~~~~ivI~TTN~~-------~~Ld~allRpGR~-d~~I~~~~p~--~~~~~~L~~~~l~ 388 (455)
..++.||+|||.. ..++++|.. || ...|++|+.. .++...|+..++.
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 2347889999975 345666776 77 3557777766 4556667777664
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.37 E-value=1.8e-12 Score=145.27 Aligned_cols=155 Identities=19% Similarity=0.288 Sum_probs=111.9
Q ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC----CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCC
Q 047029 207 DTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA----WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRS 279 (455)
Q Consensus 207 d~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~----~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~ 279 (455)
+.++|.+..++.+...+.... .|.. +..++||+||||||||++|+++|+.+ +.+++.++++.+..
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred cccCCcHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 467888888887777665322 1221 12479999999999999999999999 78999999987633
Q ss_pred h-------------------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccc--c
Q 047029 280 N-------------------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWS--S 338 (455)
Q Consensus 280 ~-------------------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~--~ 338 (455)
. ..+...+.. ..++||||||||.+. ...++.|+..||...- .
T Consensus 630 ~~~~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~----------------~~~~~~Ll~~l~~~~~~~~ 692 (854)
T 1qvr_A 630 KHAVSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH----------------PDVFNILLQILDDGRLTDS 692 (854)
T ss_dssp SGGGGGC--------------CHHHHHHH-CSSEEEEESSGGGSC----------------HHHHHHHHHHHTTTEECCS
T ss_pred hhHHHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC----------------HHHHHHHHHHhccCceECC
Confidence 2 122222222 346899999999763 2466778888874321 1
Q ss_pred C-----CCceEEEEEcCC--------------------------CCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 339 C-----GDERIIVFTTNY--------------------------KERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 339 ~-----~~~~ivI~TTN~--------------------------~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
. -.+.+||+|||. ...+.|+|+. ||+..+.+.+|+.++...|+..++
T Consensus 693 ~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 693 HGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp SSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred CCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHH
Confidence 1 135789999997 2346677777 999999999999999999999887
Q ss_pred c
Q 047029 388 K 388 (455)
Q Consensus 388 ~ 388 (455)
.
T Consensus 771 ~ 771 (854)
T 1qvr_A 771 S 771 (854)
T ss_dssp H
T ss_pred H
Confidence 6
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.4e-13 Score=148.28 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=88.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec----cccCC---hHHH------H-HHHHhhCCceEEEEecccchhhhh
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL----ASLRS---NSDL------R-RLLVSTGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~----~~~~~---~~~l------~-~ll~~~~~~~IL~iDEiD~l~~~~ 308 (455)
++||+||||||||++|+++|+.++..++.... ..+.. .... . ..+ ....++|+||||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l-~~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGAL-VLADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHH-HHHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCee-EecCCCcEEeehhhhCCH--
Confidence 79999999999999999999999766654321 11100 0000 0 001 112468999999998632
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcc---------cccCCCceEEEEEcCCCC-------------CCCccccCCCcee
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGL---------WSSCGDERIIVFTTNYKE-------------RLDPALLRPGRMD 366 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~---------~~~~~~~~ivI~TTN~~~-------------~Ld~allRpGR~d 366 (455)
...+.|+..|+.. ....+.+..||+|||++. .|+++|++ |||
T Consensus 406 --------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFD 469 (595)
T 3f9v_A 406 --------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFD 469 (595)
T ss_dssp --------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCS
T ss_pred --------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCe
Confidence 3456677777632 222234578999999886 89999999 998
Q ss_pred E-EEEeCCCCHHHHHHHHHHhhccc
Q 047029 367 M-HIHMSYLTPGGFKILAFNYLKIK 390 (455)
Q Consensus 367 ~-~I~~~~p~~~~~~~L~~~~l~~~ 390 (455)
. .+..++|+.+ ...|+++.+...
T Consensus 470 l~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 470 LIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 4 5667788888 888888887653
No 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=1.5e-12 Score=118.15 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=80.7
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccccC
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELASLR 278 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~~~ 278 (455)
+.+|++++......+.+.+.+..++.. +....+++++|+||||||||+|++++++.+ |..++.++..++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 568999988655556666666655543 334446799999999999999999999988 6666666655431
Q ss_pred Ch-------HHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 279 SN-------SDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 279 ~~-------~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
.. ......+....++.+|+|||++.... +..... .+.+.++.... .+..+|+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~-----------~~~~~~---~l~~ll~~~~~---~~~~ii~tsn~ 142 (180)
T 3ec2_A 80 FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERL-----------SDWQRE---LISYIITYRYN---NLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCC-----------CHHHHH---HHHHHHHHHHH---TTCEEEEECCC
T ss_pred HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcC-----------CHHHHH---HHHHHHHHHHH---cCCCEEEEcCC
Confidence 10 00112334445789999999985311 112222 33344443322 24678889987
Q ss_pred CC
Q 047029 352 KE 353 (455)
Q Consensus 352 ~~ 353 (455)
+.
T Consensus 143 ~~ 144 (180)
T 3ec2_A 143 SL 144 (180)
T ss_dssp CS
T ss_pred Ch
Confidence 53
No 82
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.33 E-value=9.9e-12 Score=151.32 Aligned_cols=135 Identities=21% Similarity=0.348 Sum_probs=98.2
Q ss_pred CceeEEECCCCCChHHHH-HHHHHHcCCcEEEEeccccCChHHHHHHHHhh-----------------CCceEEEEeccc
Q 047029 241 KRGYLLYGPPGTGKSSLI-AAMANYLKFDIYDMELASLRSNSDLRRLLVST-----------------GNRSILVIEDID 302 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla-~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~-----------------~~~~IL~iDEiD 302 (455)
++++||+||||||||++| +++++..++.++.++++...+...+++.+... .+++||||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 579999999999999999 55555558888999999888777777776532 124799999999
Q ss_pred chhhhhhhcCCCCCCCCcchhhHhhhhhhhh--cccccCC------CceEEEEEcCCCC-----CCCccccCCCceeEEE
Q 047029 303 CSIELENRQCGGGYDENNSQVTLSGLLNFVD--GLWSSCG------DERIIVFTTNYKE-----RLDPALLRPGRMDMHI 369 (455)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--g~~~~~~------~~~ivI~TTN~~~-----~Ld~allRpGR~d~~I 369 (455)
.... +....+..+.-|...+| |++.... .++.+|+|||++. .|+|+++| || ..|
T Consensus 1347 mp~~----------d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1347 LPKL----------DKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp CSCC----------CSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred cccc----------cccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 6321 00011222333333333 4443221 2478999999995 79999999 99 679
Q ss_pred EeCCCCHHHHHHHHHHhhc
Q 047029 370 HMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 370 ~~~~p~~~~~~~L~~~~l~ 388 (455)
.++.|+.+++..|+..++.
T Consensus 1414 ~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 9999999999999988875
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=8.5e-12 Score=123.55 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=96.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc------CCcEEEEeccc-cCChHHHHHHHHhhC------CceEEEEecccchhhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL------KFDIYDMELAS-LRSNSDLRRLLVSTG------NRSILVIEDIDCSIEL 307 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l------~~~v~~l~~~~-~~~~~~l~~ll~~~~------~~~IL~iDEiD~l~~~ 307 (455)
...||||||||||||++++++|+.+ ..+++.++.+. -.+-..+++++.... ...|++|||+|.+-.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~- 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ- 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-
Confidence 4589999999999999999999864 45788887653 334456777765442 357999999998732
Q ss_pred hhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhh
Q 047029 308 ENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYL 387 (455)
Q Consensus 308 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l 387 (455)
...+.||..|+.- ++..++|++||.+.+|.|++++ | .++|+.|+.++....+...+
T Consensus 97 ---------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 97 ---------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ---------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 3456788888753 3567888888999999999999 7 79999999999888887776
Q ss_pred c
Q 047029 388 K 388 (455)
Q Consensus 388 ~ 388 (455)
+
T Consensus 153 ~ 153 (305)
T 2gno_A 153 G 153 (305)
T ss_dssp T
T ss_pred C
Confidence 3
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.22 E-value=2.8e-11 Score=111.58 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=65.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC-CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA-WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL 277 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~-~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~ 277 (455)
.+.+|+++.+.....+.+++.+..++... +.. .+++++|+||||||||++++++++.+ +..++.+++..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------EPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------CSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------hhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 35789999987655555666666666542 111 13799999999999999999999988 677877776543
Q ss_pred CC-------hHHHHHHHHhhCCceEEEEecccch
Q 047029 278 RS-------NSDLRRLLVSTGNRSILVIEDIDCS 304 (455)
Q Consensus 278 ~~-------~~~l~~ll~~~~~~~IL~iDEiD~l 304 (455)
.. ...+..++.......+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 1111222333334579999999864
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=1.2e-10 Score=118.32 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=107.1
Q ss_pred CCCCcccccCHHHHHHHHHHH-HHHHHhHHHHhhhcCCCCceeEE--ECCCCCChHHHHHHHHHHc---------CCcEE
Q 047029 203 PSTFDTLAMDPVLKQALIDDL-DRFVKRREFYSRVGKAWKRGYLL--YGPPGTGKSSLIAAMANYL---------KFDIY 270 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l-~~~l~~~~~~~~~g~~~~rg~LL--~GPpGTGKTsla~alA~~l---------~~~v~ 270 (455)
....+.++|-++..++|.+.+ ....... ...++.++| +||||||||++++++++.+ +..++
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~ 90 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA 90 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEE
Confidence 334577899888888887776 5433220 012568999 9999999999999999887 45677
Q ss_pred EEeccccCCh----------------------HH----HHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhh
Q 047029 271 DMELASLRSN----------------------SD----LRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVT 324 (455)
Q Consensus 271 ~l~~~~~~~~----------------------~~----l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ 324 (455)
.+++....+. .. +...+.....+.||+|||++.+... .......
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~----------~~~~~~~ 160 (412)
T 1w5s_A 91 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSS----------PRIAAED 160 (412)
T ss_dssp EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSC----------TTSCHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhc----------cCcchHH
Confidence 7776432111 11 2222233356889999999987420 0012344
Q ss_pred HhhhhhhhhcccccCC--CceEEEEEcCCCC---CCC---ccccCCCceeEEEEeCCCCHHHHHHHHHHhhc
Q 047029 325 LSGLLNFVDGLWSSCG--DERIIVFTTNYKE---RLD---PALLRPGRMDMHIHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 325 ls~LL~~ldg~~~~~~--~~~ivI~TTN~~~---~Ld---~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~ 388 (455)
+..++..++.... .+ .++.+|++||.++ .++ +.+.+ |+...++++.++.++..+++...+.
T Consensus 161 l~~l~~~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 161 LYTLLRVHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp HHHHHTHHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 5555555554321 02 4577888888654 344 66666 5555699999999999999987765
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.10 E-value=7.3e-11 Score=116.93 Aligned_cols=96 Identities=25% Similarity=0.395 Sum_probs=62.7
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC----CcEEEEeccccC
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK----FDIYDMELASLR 278 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~----~~v~~l~~~~~~ 278 (455)
+.+|+++.+....++.+.+.+..|+... +..++++++||||||||||+|+.++|+.+. ..+..+.+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4799999986544455666666666532 111367999999999999999999999764 777777665321
Q ss_pred -------ChHHHHHHHHhhCCceEEEEecccch
Q 047029 279 -------SNSDLRRLLVSTGNRSILVIEDIDCS 304 (455)
Q Consensus 279 -------~~~~l~~ll~~~~~~~IL~iDEiD~l 304 (455)
....+...+....+..+|+|||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 11111122223335679999999754
No 87
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.09 E-value=9.6e-11 Score=119.17 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=86.7
Q ss_pred hcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCC
Q 047029 236 VGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGG 315 (455)
Q Consensus 236 ~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~ 315 (455)
.++++++.++|+||||+||||+++++++.++..++.++... ......+.......++++||++.......+. .
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~----~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l-~-- 236 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL----DRLNFELGVAIDQFLVVFEDVKGTGGESRDL-P-- 236 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT----TTHHHHHGGGTTCSCEEETTCCCSTTTTTTC-C--
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc----hhHHHHHHHhcchhHHHHHHHHHHHHHHhhc-c--
Confidence 47888889999999999999999999999987765533221 1222234445567888999999875421110 0
Q ss_pred CCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCC
Q 047029 316 YDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSY 373 (455)
Q Consensus 316 ~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~ 373 (455)
..........+.+.+||. +.|+++||+++.+ ++++||||++..+...+
T Consensus 237 --~~~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 237 --SGQGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp --CCSHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred --ccCcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 011112456778888874 4578899999999 89999999999888866
No 88
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.08 E-value=2.6e-10 Score=105.92 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=70.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCC
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGY 316 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~ 316 (455)
|+|.++++|+|||||||||++|.++|+.++..++.+.-+ .+. ..+.......|++|||+|.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans--~s~----f~l~~l~~~kIiiLDEad~~~----------- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS--TSH----FWLEPLTDTKVAMLDDATTTC----------- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS--SSC----GGGGGGTTCSSEEEEEECHHH-----------
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec--cch----hhhcccCCCCEEEEECCCchh-----------
Confidence 466677899999999999999999999997655432111 111 012233345699999998431
Q ss_pred CCCcchhhHhhhhhhhhcccc---cCC------CceEEEEEcCCC---CCCCccccCCCceeEEEEeCCCC
Q 047029 317 DENNSQVTLSGLLNFVDGLWS---SCG------DERIIVFTTNYK---ERLDPALLRPGRMDMHIHMSYLT 375 (455)
Q Consensus 317 ~~~~~~~~ls~LL~~ldg~~~---~~~------~~~ivI~TTN~~---~~Ld~allRpGR~d~~I~~~~p~ 375 (455)
.......+-+.+||... ... ....+|+|||.. +..-+.|.. |+ ..+.++.|-
T Consensus 117 ----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri-~~f~F~~~~ 180 (212)
T 1tue_A 117 ----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI-TVFEFPNAF 180 (212)
T ss_dssp ----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC-EEEECCSCC
T ss_pred ----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE-EEEEcCCCC
Confidence 11222356677777521 000 124688899963 222345667 87 467777443
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.01 E-value=6.8e-10 Score=130.35 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHh----------HHHHhh------hcCC----------CCce--eEEECCCCCChH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKR----------REFYSR------VGKA----------WKRG--YLLYGPPGTGKS 255 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~----------~~~~~~------~g~~----------~~rg--~LL~GPpGTGKT 255 (455)
.+|+++.+..+.|+++++.+..++.. ++.|+. .|+. +|+| +|+|||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 57999999999999999999988854 556666 3333 4455 999999999999
Q ss_pred HHHHHHHHHc---CCcEEEEecccc------------------C----ChHHHHHHHH--hhCCceEEEEecccchhhhh
Q 047029 256 SLIAAMANYL---KFDIYDMELASL------------------R----SNSDLRRLLV--STGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 256 sla~alA~~l---~~~v~~l~~~~~------------------~----~~~~l~~ll~--~~~~~~IL~iDEiD~l~~~~ 308 (455)
+||.++|.+. +-+...++.... . ++..++.++. ....++++++|++|++.+.+
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 9999999876 334444443321 1 2345544443 24579999999999998754
Q ss_pred hhcCCCC-CCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 309 NRQCGGG-YDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 309 ~~~~~~~-~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
..+...+ .+.....+.++++|..||++... .+++|| +||+.
T Consensus 1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred ccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 3221111 11233445689999999997664 335555 77754
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.98 E-value=4.8e-10 Score=120.96 Aligned_cols=52 Identities=33% Similarity=0.349 Sum_probs=41.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
-.|.+|++++|...+++.+...+. . ...++|+||||||||++++++|+.+..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~----~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN----Q-----------KRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH----T-----------TCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhcccccc----C-----------CCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 346789999999888766655443 1 358999999999999999999998853
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.93 E-value=1.2e-09 Score=96.67 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=65.8
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCC
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGY 316 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~ 316 (455)
....++|+||+|+|||+|++++++.+ |..++.++...+... ....++.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~~---------- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLGN---------- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCCS----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccCh----------
Confidence 35689999999999999999999988 777888887766443 1123578999999997532
Q ss_pred CCCcchhhHhhhhhhhhcccccCCCceEEEEEcC-CCCCCC--ccccCCCcee
Q 047029 317 DENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTN-YKERLD--PALLRPGRMD 366 (455)
Q Consensus 317 ~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN-~~~~Ld--~allRpGR~d 366 (455)
..+ ..|++.++..... +..++|+||| .++.+. ++|.+ |+.
T Consensus 98 ---~~~---~~l~~li~~~~~~--g~~~iiits~~~p~~l~~~~~L~S--Rl~ 140 (149)
T 2kjq_A 98 ---EEQ---ALLFSIFNRFRNS--GKGFLLLGSEYTPQQLVIREDLRT--RMA 140 (149)
T ss_dssp ---HHH---HHHHHHHHHHHHH--TCCEEEEEESSCTTTSSCCHHHHH--HGG
T ss_pred ---HHH---HHHHHHHHHHHHc--CCcEEEEECCCCHHHccccHHHHH--HHh
Confidence 112 3344444444332 2233556777 454443 66666 554
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.92 E-value=8.4e-08 Score=94.85 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=91.8
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc-----C
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL-----R 278 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~-----~ 278 (455)
..-+.++|-++..+.|.+ +.. +.++++||+|+|||+|++.+++.++.+++.+++... .
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 345667887666665554 421 489999999999999999999998777777776532 0
Q ss_pred C-----------------------------------------------hHHHHHH---HHhhC-CceEEEEecccchhhh
Q 047029 279 S-----------------------------------------------NSDLRRL---LVSTG-NRSILVIEDIDCSIEL 307 (455)
Q Consensus 279 ~-----------------------------------------------~~~l~~l---l~~~~-~~~IL~iDEiD~l~~~ 307 (455)
+ ...+..+ +.... .+.+|+|||++.+..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~- 151 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK- 151 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG-
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc-
Confidence 1 0112222 22322 388999999998742
Q ss_pred hhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCC---------CCccccCCCceeEEEEeCCCCHHH
Q 047029 308 ENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKER---------LDPALLRPGRMDMHIHMSYLTPGG 378 (455)
Q Consensus 308 ~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~---------Ld~allRpGR~d~~I~~~~p~~~~ 378 (455)
......+..|-..++.. .+..+|+|++.... ....+ .||+...++++..+.++
T Consensus 152 -----------~~~~~~~~~l~~~~~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e 213 (357)
T 2fna_A 152 -----------LRGVNLLPALAYAYDNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREE 213 (357)
T ss_dssp -----------CTTCCCHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHH
T ss_pred -----------cCchhHHHHHHHHHHcC-----CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHH
Confidence 00011122222222221 24566666654321 11122 34777889999999999
Q ss_pred HHHHHHHhhc
Q 047029 379 FKILAFNYLK 388 (455)
Q Consensus 379 ~~~L~~~~l~ 388 (455)
..+++...++
T Consensus 214 ~~~~l~~~~~ 223 (357)
T 2fna_A 214 AIEFLRRGFQ 223 (357)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 93
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.86 E-value=2.1e-08 Score=123.22 Aligned_cols=135 Identities=18% Similarity=0.362 Sum_probs=95.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHH-cCCcEEEEeccccCChHHHHHHHHhh------------------CCceEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY-LKFDIYDMELASLRSNSDLRRLLVST------------------GNRSILVIEDI 301 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~-l~~~v~~l~~~~~~~~~~l~~ll~~~------------------~~~~IL~iDEi 301 (455)
.+.+||+||||||||++++..... .+..++.++++.-.+...+...+... .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 568999999999999887654444 47778889999888888887777521 12369999999
Q ss_pred cchhhhhhhcCCCCCCCCcchhhHhhhhhhhh--cccccCC------CceEEEEEcCCC-----CCCCccccCCCceeEE
Q 047029 302 DCSIELENRQCGGGYDENNSQVTLSGLLNFVD--GLWSSCG------DERIIVFTTNYK-----ERLDPALLRPGRMDMH 368 (455)
Q Consensus 302 D~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ld--g~~~~~~------~~~ivI~TTN~~-----~~Ld~allRpGR~d~~ 368 (455)
+.... +.-..+..+.-|...+| |++.... .+..+|+|+|++ ..|+++++| ||..
T Consensus 1384 Nmp~~----------D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v- 1450 (3245)
T 3vkg_A 1384 NLPST----------DKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI- 1450 (3245)
T ss_dssp TCCCC----------CTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-
T ss_pred CCCCc----------cccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-
Confidence 85321 11112334455555555 2332211 346789999988 459999999 9964
Q ss_pred EEeCCCCHHHHHHHHHHhhc
Q 047029 369 IHMSYLTPGGFKILAFNYLK 388 (455)
Q Consensus 369 I~~~~p~~~~~~~L~~~~l~ 388 (455)
+.+++|+.++...|+..++.
T Consensus 1451 i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999877654
No 94
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.83 E-value=4.6e-07 Score=89.36 Aligned_cols=176 Identities=17% Similarity=0.127 Sum_probs=101.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccC---
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLR--- 278 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~--- 278 (455)
++..-+.++|-+...+.|.+.+.. .+.++++||+|+|||+|++.+++..+ ++.+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 344556788887777777665531 25899999999999999999999986 5556553221
Q ss_pred ---Ch------------------------------------HHHHHH---HHhh---CCceEEEEecccchhhhhhhcCC
Q 047029 279 ---SN------------------------------------SDLRRL---LVST---GNRSILVIEDIDCSIELENRQCG 313 (455)
Q Consensus 279 ---~~------------------------------------~~l~~l---l~~~---~~~~IL~iDEiD~l~~~~~~~~~ 313 (455)
+. ..+..+ +... ..+.+|+|||++.+....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----- 144 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----- 144 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT-----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC-----
Confidence 10 112222 2211 138899999999874200
Q ss_pred CCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC---------CCCccccCCCceeEEEEeCCCCHHHHHHHHH
Q 047029 314 GGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE---------RLDPALLRPGRMDMHIHMSYLTPGGFKILAF 384 (455)
Q Consensus 314 ~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~---------~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~ 384 (455)
.......+..|...++.. .++.+|+|+.... .....+. ||....++++..+.++..+++.
T Consensus 145 ----~~~~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~ 213 (350)
T 2qen_A 145 ----SRGGKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLK 213 (350)
T ss_dssp ----TTTTHHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHH
T ss_pred ----ccchhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHH
Confidence 001112223233333332 2455666654321 1122222 4776789999999999999998
Q ss_pred HhhcccCCCc-hHHHHHhhccccCchh
Q 047029 385 NYLKIKSHSM-FDEIEELIKEVEVTPA 410 (455)
Q Consensus 385 ~~l~~~~~~l-~~ei~~ll~~~~~tpa 410 (455)
..++..+... .+.+..+.....-.|.
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 214 RGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 8765433222 2344444444444454
No 95
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.82 E-value=2.5e-09 Score=106.01 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=67.8
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEec--cc----cC-C-hHHHHHHHHhhCCceEEEEecccchhhhh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL--AS----LR-S-NSDLRRLLVSTGNRSILVIEDIDCSIELE 308 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~--~~----~~-~-~~~l~~ll~~~~~~~IL~iDEiD~l~~~~ 308 (455)
|++..+.++|+||||||||+|+.++|...+..+..++. .+ .. . ...+..+.....+..+||||+++.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 55666778999999999999999999876555433333 11 11 1 12222222222221299999999875421
Q ss_pred hhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccc
Q 047029 309 NRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPAL 359 (455)
Q Consensus 309 ~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~al 359 (455)
... ...+.....+.+++..|+++... .++.+|++|| +...|+++
T Consensus 199 ~~~----s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGN----TTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred ccc----cccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 110 01112235567788877776554 3467888888 55666664
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.82 E-value=7e-09 Score=96.27 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=76.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc--------C-CcEEEEeccccCC---------------------hHHHHHHHH-hh
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL--------K-FDIYDMELASLRS---------------------NSDLRRLLV-ST 290 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l--------~-~~v~~l~~~~~~~---------------------~~~l~~ll~-~~ 290 (455)
--+|++|+||||||++|.+++... | .+++..++..+.. ...+...+. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999998875443 3 6666555443310 122232210 12
Q ss_pred CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEE
Q 047029 291 GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIH 370 (455)
Q Consensus 291 ~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~ 370 (455)
..++||+|||++.+++.+. .. .+. ..++..+... .....-||++|++++.||.++++ |++.+++
T Consensus 86 ~~~~vliIDEAq~l~~~~~--~~-----~e~----~rll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~ 149 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARS--AG-----SKI----PENVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYH 149 (199)
T ss_dssp GTTCEEEETTGGGTSBCCC--TT-----CCC----CHHHHGGGGT---TTTTCEEEEEESCGGGBCHHHHT--TEEEEEE
T ss_pred cCceEEEEEChhhhccCcc--cc-----chh----HHHHHHHHhc---CcCCeEEEEECCCHHHHhHHHHH--HhheEEE
Confidence 3489999999999864110 00 011 1244444432 12456778889989999999998 9999999
Q ss_pred eCCCCHH
Q 047029 371 MSYLTPG 377 (455)
Q Consensus 371 ~~~p~~~ 377 (455)
+..|...
T Consensus 150 l~~~~~~ 156 (199)
T 2r2a_A 150 IASNKMG 156 (199)
T ss_dssp EEECSSC
T ss_pred EcCcccC
Confidence 9886543
No 97
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.75 E-value=4.4e-08 Score=94.63 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCC
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDE 318 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~ 318 (455)
+++++++||||||||||+++.|+|+.++.. -.++.+. + ...+.....+.|++.||....-+
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~~----~--~f~l~~~~~k~i~l~Ee~~~~~d------------ 162 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN----E--NFPFNDCVDKMVIWWEEGKMTAK------------ 162 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC----S--SCTTGGGSSCSEEEECSCCEETT------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeeccc----c--ccccccccccEEEEeccccchhH------------
Confidence 446789999999999999999999987542 2222221 1 11344455667888888775421
Q ss_pred CcchhhHhhhhh----hhhccccc--CCCceEEEEEcCC-C----------CCCCccccCCCceeEEEEeC--------C
Q 047029 319 NNSQVTLSGLLN----FVDGLWSS--CGDERIIVFTTNY-K----------ERLDPALLRPGRMDMHIHMS--------Y 373 (455)
Q Consensus 319 ~~~~~~ls~LL~----~ldg~~~~--~~~~~ivI~TTN~-~----------~~Ld~allRpGR~d~~I~~~--------~ 373 (455)
....+..++. .+|..... .-....+|+|||. + +...++|.+ |+ ..+.|. .
T Consensus 163 --~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s--R~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 163 --VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD--RM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp --THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT--TE-EEEECCSCCCTTSCC
T ss_pred --HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh--hE-EEEECCCcCCcccCC
Confidence 1112222222 11211110 0023467888886 2 245578888 88 678887 5
Q ss_pred CCHHHHHHHHH
Q 047029 374 LTPGGFKILAF 384 (455)
Q Consensus 374 p~~~~~~~L~~ 384 (455)
.+.++-+..+.
T Consensus 238 lt~~~~~~f~~ 248 (267)
T 1u0j_A 238 VTKQEVKDFFR 248 (267)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66677666665
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.73 E-value=3.8e-08 Score=120.27 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDEN 319 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~ 319 (455)
..|.+++||+|||||++++++|+.+|.+++.++|++-.+...+.++|..+. .++++++||++.+-.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~------------- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE------------- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh-------------
Confidence 568999999999999999999999999999999999888888888886654 479999999998632
Q ss_pred cchhhHhhh-------hhhh---------hcccccCCCceEEEEEcC----CCCCCCccccCCCceeEEEEeCCCCHHHH
Q 047029 320 NSQVTLSGL-------LNFV---------DGLWSSCGDERIIVFTTN----YKERLDPALLRPGRMDMHIHMSYLTPGGF 379 (455)
Q Consensus 320 ~~~~~ls~L-------L~~l---------dg~~~~~~~~~ivI~TTN----~~~~Ld~allRpGR~d~~I~~~~p~~~~~ 379 (455)
.+++.+ ++.+ +|-.-....+..|++|.| ....|+++|.+ || +.|.|.+|+.+..
T Consensus 712 ---evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i 785 (2695)
T 4akg_A 712 ---KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTI 785 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHH
Confidence 222322 1221 111111123456788998 34679999999 88 6899999999887
Q ss_pred HHHHHH
Q 047029 380 KILAFN 385 (455)
Q Consensus 380 ~~L~~~ 385 (455)
.++.-.
T Consensus 786 ~ei~l~ 791 (2695)
T 4akg_A 786 AEMILQ 791 (2695)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.62 E-value=4.7e-07 Score=91.68 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=97.1
Q ss_pred ccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCc--EEEEeccccCChHHHHH
Q 047029 208 TLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFD--IYDMELASLRSNSDLRR 285 (455)
Q Consensus 208 ~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~--v~~l~~~~~~~~~~l~~ 285 (455)
.++|......++.+.+..... ....+|++|++||||+.+++++....+.. ++.++|+.+...-.-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 466766666666665543221 14569999999999999999999987543 99999998754333333
Q ss_pred HHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cccCCC------
Q 047029 286 LLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WSSCGD------ 341 (455)
Q Consensus 286 ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~~~------ 341 (455)
+|. ....+..||||||+.+.. .....||..++.- ....|+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~----------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ----------------RVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH----------------HHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH----------------HHHHHHHHHHHhCCcccCCCCcceee
Confidence 331 123457899999998743 3455677776532 121121
Q ss_pred ceEEEEEcCCC-------CCCCccccCCCcee-EEEEeCCCCH--HHHHHHHHHhhcc
Q 047029 342 ERIIVFTTNYK-------ERLDPALLRPGRMD-MHIHMSYLTP--GGFKILAFNYLKI 389 (455)
Q Consensus 342 ~~ivI~TTN~~-------~~Ld~allRpGR~d-~~I~~~~p~~--~~~~~L~~~~l~~ 389 (455)
++-+|++||.. ..+.+.|.. |+. ..|++|+... +....|+.+|+..
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHH
Confidence 35588888853 123333433 333 3678887766 6677788877753
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.59 E-value=3.1e-07 Score=93.59 Aligned_cols=154 Identities=15% Similarity=0.188 Sum_probs=95.6
Q ss_pred CcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcC---CcEEEEeccccCChHH
Q 047029 206 FDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMELASLRSNSD 282 (455)
Q Consensus 206 fd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~~~~~~~~~ 282 (455)
++.+++....-+++.+.+.... +....+|++|++||||+++|+++....+ .+++.++|+.+...--
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 4456776666666666555321 1245789999999999999999998874 6899999998643221
Q ss_pred HHHHHH-----------------hhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcc-cccC-----
Q 047029 283 LRRLLV-----------------STGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGL-WSSC----- 339 (455)
Q Consensus 283 l~~ll~-----------------~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~-~~~~----- 339 (455)
-.++|. ....+++||||||+.+.. .....|+..++.. ....
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~----------------~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL----------------EAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH----------------HHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH----------------HHHHHHHHHHhcCcEEeCCCCce
Confidence 222331 123457999999998743 3445566666531 1111
Q ss_pred -CCceEEEEEcCCC-------CCCCccccCCCce-eEEEEeCCCCH--HHHHHHHHHhhc
Q 047029 340 -GDERIIVFTTNYK-------ERLDPALLRPGRM-DMHIHMSYLTP--GGFKILAFNYLK 388 (455)
Q Consensus 340 -~~~~ivI~TTN~~-------~~Ld~allRpGR~-d~~I~~~~p~~--~~~~~L~~~~l~ 388 (455)
..++.||+|||.. ..+.+.|.- |+ ...|++|+... +....|+..|+.
T Consensus 269 ~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 269 IEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred eeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 1245688999863 223333332 33 25567766543 566677777764
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.58 E-value=3.2e-08 Score=102.40 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=84.3
Q ss_pred cccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHH-HHHcCCcEEEEeccccCChHHHH---
Q 047029 209 LAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAM-ANYLKFDIYDMELASLRSNSDLR--- 284 (455)
Q Consensus 209 l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~al-A~~l~~~v~~l~~~~~~~~~~l~--- 284 (455)
+.|++.+|+.|.-.+.. +-.. ....-++||.|+||| ||++++++ ++.+....+...... +...+.
T Consensus 215 I~G~e~vK~aLll~L~G---G~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~s--s~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFS---CVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRT--ELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHHTT---CCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGC--CHHHHSEEE
T ss_pred cCCCHHHHHHHHHHHcC---Cccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCC--CccCceEEE
Confidence 77888888777554421 0000 111226999999999 99999999 777655554322111 111111
Q ss_pred ---------HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccc-c----cCCCceEEEEEcC
Q 047029 285 ---------RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLW-S----SCGDERIIVFTTN 350 (455)
Q Consensus 285 ---------~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~-~----~~~~~~ivI~TTN 350 (455)
.-........|+|+|||+.+. ..+++.|++.|+.-. + ..+....||+|+|
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~----------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAP----------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCC----------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCC----------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 000112356899999999763 255677777776211 0 2234578999999
Q ss_pred CCC-----------CCCccccCCCceeEEE-EeCCCCHHH
Q 047029 351 YKE-----------RLDPALLRPGRMDMHI-HMSYLTPGG 378 (455)
Q Consensus 351 ~~~-----------~Ld~allRpGR~d~~I-~~~~p~~~~ 378 (455)
+.+ .|+++++. |||+.+ .+++|+.+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 875 78899999 998755 457777654
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.43 E-value=7.8e-07 Score=109.67 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=96.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHHHhhC-CceEEEEecccchhhhhhhcCCCCCCCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLLVSTG-NRSILVIEDIDCSIELENRQCGGGYDEN 319 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~-~~~IL~iDEiD~l~~~~~~~~~~~~~~~ 319 (455)
..|..++||+|||||.+++++|+.+|..++.++|+.-.+...+.++|.... .++..++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~------------- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE------------- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH-------------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH-------------
Confidence 457789999999999999999999999999999998877778888886654 578999999998632
Q ss_pred cchhhHhhhhhhhh-----------------cccccCCCceEEEEEcCC----CCCCCccccCCCceeEEEEeCCCCHHH
Q 047029 320 NSQVTLSGLLNFVD-----------------GLWSSCGDERIIVFTTNY----KERLDPALLRPGRMDMHIHMSYLTPGG 378 (455)
Q Consensus 320 ~~~~~ls~LL~~ld-----------------g~~~~~~~~~ivI~TTN~----~~~Ld~allRpGR~d~~I~~~~p~~~~ 378 (455)
.+++-+...+. |-.-.-..+.-|++|.|+ ...|+++|.. || +.|.|.+|+.+.
T Consensus 671 ---~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 671 ---RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 22332222221 211111234568889984 4679999999 99 679999999998
Q ss_pred HHHHHHHhhcc
Q 047029 379 FKILAFNYLKI 389 (455)
Q Consensus 379 ~~~L~~~~l~~ 389 (455)
..++.-.-.+.
T Consensus 745 i~ei~L~s~Gf 755 (3245)
T 3vkg_A 745 IAQVMLYSQGF 755 (3245)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHHccc
Confidence 87776554443
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.41 E-value=4.1e-07 Score=108.21 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=71.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHH---h
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLV---S 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~---~ 289 (455)
|++.+++++||||||||||+||.++|.+. |..+..++..... ....+.+.+. .
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47788999999999999999999998876 5566666654321 1123333333 2
Q ss_pred hCCceEEEEecccchhhhhhhcCCCCCCCCc--chhhHhhhhhhhhcccccCCCceEEEEEcCC
Q 047029 290 TGNRSILVIEDIDCSIELENRQCGGGYDENN--SQVTLSGLLNFVDGLWSSCGDERIIVFTTNY 351 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~--~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~ 351 (455)
..++++||||+++.+.+....+.. ..+... ....++++|..|++.... ..++|++||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~-~~~~~~~~~~R~lsqlL~~L~~~~~~---~~v~VI~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGE-IGDSHMGLAARMMSQAMRKLAGNLKQ---SNTLLIFINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSC-TTCCCTTHHHHHHHHHHHHHHHHHHT---TTCEEEEEEC
T ss_pred cCCCCEEEEcChhHhccccccccc-ccccccchHHHHHHHHHHHHHHHHHh---CCcEEEEEcc
Confidence 367999999999988763322111 111111 345678888888887664 2355556663
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=7.1e-06 Score=74.41 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
.+.|.||+|+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999986544
No 105
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.06 E-value=2.6e-05 Score=77.51 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=87.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CC-cEEEEeccccCChHHHHHHHHhh------CCceEEEEecccc-hhhhhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KF-DIYDMELASLRSNSDLRRLLVST------GNRSILVIEDIDC-SIELEN 309 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~-~v~~l~~~~~~~~~~l~~ll~~~------~~~~IL~iDEiD~-l~~~~~ 309 (455)
...||||||+|+||++.++++++.+ +. +...+... ...++++++... ..+.|++|||++. +.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~---- 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN---- 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC----
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC----
Confidence 5689999999999999999999876 33 21222222 223445554332 3578999999986 42
Q ss_pred hcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC------CCCCccccCCCceeEEEEeCCCCHHHHHHHH
Q 047029 310 RQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK------ERLDPALLRPGRMDMHIHMSYLTPGGFKILA 383 (455)
Q Consensus 310 ~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~------~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~ 383 (455)
....+.|+..++.. +++.++|++|+.+ ..+-+++.. |+ ..+++..++.++....+
T Consensus 91 ------------~~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 91 ------------AAINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp ------------TTHHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred ------------hHHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 12345577776643 2346666655543 345667777 66 57999999999988888
Q ss_pred HHhhcccCCCchHHHHH
Q 047029 384 FNYLKIKSHSMFDEIEE 400 (455)
Q Consensus 384 ~~~l~~~~~~l~~ei~~ 400 (455)
+..+...+....++..+
T Consensus 152 ~~~~~~~g~~i~~~a~~ 168 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQ 168 (343)
T ss_dssp HHHHHHTTCEECHHHHH
T ss_pred HHHHHHcCCCCCHHHHH
Confidence 88876655444444333
No 106
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.92 E-value=0.00018 Score=76.47 Aligned_cols=164 Identities=21% Similarity=0.210 Sum_probs=90.4
Q ss_pred CCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHH-------cCCcEEEEecc
Q 047029 203 PSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANY-------LKFDIYDMELA 275 (455)
Q Consensus 203 p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~-------l~~~v~~l~~~ 275 (455)
|..-..++|-+...++|.+.+.. +....+-++++||+|+|||+||..+++. +...++.++++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~ 188 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE
T ss_pred CCCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC
Confidence 44456688888877777665531 0122457999999999999999999753 22234544443
Q ss_pred ccCCh---------------------------H----HHHHHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhh
Q 047029 276 SLRSN---------------------------S----DLRRLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVT 324 (455)
Q Consensus 276 ~~~~~---------------------------~----~l~~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ 324 (455)
..... . .++..+....++.+|||||++...
T Consensus 189 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------------- 249 (591)
T 1z6t_A 189 KQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------------- 249 (591)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------
T ss_pred CCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------
Confidence 22100 1 122222222357899999997421
Q ss_pred HhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEe-CCCCHHHHHHHHHHhhcccCCCchHHHHHhhc
Q 047029 325 LSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHM-SYLTPGGFKILAFNYLKIKSHSMFDEIEELIK 403 (455)
Q Consensus 325 ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~-~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~ 403 (455)
.+..+ +.+..||+||........ .. |.. ..+.. +..+.++-.+|+..+.+.......+.+.++++
T Consensus 250 ---~l~~l-------~~~~~ilvTsR~~~~~~~--~~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~ 315 (591)
T 1z6t_A 250 ---VLKAF-------DSQCQILLTTRDKSVTDS--VM-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIK 315 (591)
T ss_dssp ---HHHTT-------CSSCEEEEEESCGGGGTT--CC-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHH
T ss_pred ---HHHHh-------cCCCeEEEECCCcHHHHh--cC-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 11111 123456677775432111 11 222 23332 46788888899988876432222344555555
Q ss_pred cccCchh
Q 047029 404 EVEVTPA 410 (455)
Q Consensus 404 ~~~~tpa 410 (455)
...--|.
T Consensus 316 ~~~G~PL 322 (591)
T 1z6t_A 316 ECKGSPL 322 (591)
T ss_dssp HHTTCHH
T ss_pred HhCCCcH
Confidence 5555555
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.88 E-value=6.4e-05 Score=69.04 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=32.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
|++...-++|+||||+|||+++..+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5666677999999999999999999985566777666543
No 108
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=7.4e-05 Score=69.73 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=31.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH--c-------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY--L-------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~--l-------~~~v~~l~~~~ 276 (455)
|++...-++|+||||+|||+|+..+|.. + +..++.++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5666777999999999999999999985 3 34566665443
No 109
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.79 E-value=9.3e-05 Score=74.42 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=64.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHH---h
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLV---S 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~---~ 289 (455)
|++...-++|+||||+|||+|+..+|..+ +..+..++..... +..++...+. .
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56666779999999999999999999875 5566666654321 1122222222 2
Q ss_pred hCCceEEEEecccchhhhhhhcCCCCCC-CCcchhhHhhhhhhhhcccccCCCceEEEEEcCCC
Q 047029 290 TGNRSILVIEDIDCSIELENRQCGGGYD-ENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYK 352 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~~~~~~~~~~~~-~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~ 352 (455)
...+.+++||.+..+.+...-....+.. .......+++++..+..+.... +..||+ +|+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~--~~tVI~-inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKS--KAVVIF-TNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTS--SCEEEE-EEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhc--CCEEEE-Eeee
Confidence 2467899999998876411111111000 0112345566666666664432 344444 3444
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=0.00011 Score=67.91 Aligned_cols=37 Identities=22% Similarity=0.073 Sum_probs=28.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
|++....++|+||||+|||+|++.+|..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45556679999999999999999999765 44554443
No 111
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.70 E-value=0.0006 Score=78.17 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=95.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc-------CCcEEEEec
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL-------KFDIYDMEL 274 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l-------~~~v~~l~~ 274 (455)
.|..-..++|-++..++|.+.|... -...+-+.|+|++|+|||+||+.+++.. ...++.+++
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 4555667889888888877766310 1124568899999999999999988752 223445554
Q ss_pred cccC---------------------------ChHHHHHHHHhh----CCceEEEEecccchhhhhhhcCCCCCCCCcchh
Q 047029 275 ASLR---------------------------SNSDLRRLLVST----GNRSILVIEDIDCSIELENRQCGGGYDENNSQV 323 (455)
Q Consensus 275 ~~~~---------------------------~~~~l~~ll~~~----~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~ 323 (455)
+... ....+...+... .++.+|||||++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~----------------- 250 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWV----------------- 250 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHH-----------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHH-----------------
Confidence 4311 011222222211 3378999999985311
Q ss_pred hHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCC-CCHHHHHHHHHHhhcccCCCchHHHHHhh
Q 047029 324 TLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSY-LTPGGFKILAFNYLKIKSHSMFDEIEELI 402 (455)
Q Consensus 324 ~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~-p~~~~~~~L~~~~l~~~~~~l~~ei~~ll 402 (455)
+. .+ +.+.-||+||..+...... . .....+.++. .+.++-.+|+..+.......+.+...+++
T Consensus 251 -----~~---~~----~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~ 314 (1249)
T 3sfz_A 251 -----LK---AF----DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII 314 (1249)
T ss_dssp -----HT---TT----CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH
T ss_pred -----HH---hh----cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH
Confidence 11 11 1234577788765432111 1 1234577775 88888888888877554433334445555
Q ss_pred ccccCchh
Q 047029 403 KEVEVTPA 410 (455)
Q Consensus 403 ~~~~~tpa 410 (455)
+...-.|.
T Consensus 315 ~~~~glPL 322 (1249)
T 3sfz_A 315 KECKGSPL 322 (1249)
T ss_dssp HHTTTCHH
T ss_pred HHhCCCHH
Confidence 55444454
No 112
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.68 E-value=0.00011 Score=73.83 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=47.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHH---h
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLV---S 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~---~ 289 (455)
|++..+-++|+||||+|||+|+..+|... +..+..++..... +..++..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56667779999999999999999998765 5566666543311 1122222222 2
Q ss_pred hCCceEEEEecccchh
Q 047029 290 TGNRSILVIEDIDCSI 305 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~ 305 (455)
...+.+||||++..+.
T Consensus 137 ~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 137 SGALDIIVIDSVAALV 152 (349)
T ss_dssp TTCCSEEEEECGGGCC
T ss_pred cCCCCEEEEcChHhhc
Confidence 2458999999999886
No 113
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.68 E-value=7.8e-05 Score=73.80 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=32.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~ 276 (455)
|++...-++|+||||+|||+++..+|... +..++.++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56767789999999999999999999875 45666666543
No 114
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.67 E-value=2.2e-05 Score=70.56 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=29.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
++.++|.|||||||||+++++|..+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999988654
No 115
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.65 E-value=0.00014 Score=73.06 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=49.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHH---h
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLV---S 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~---~ 289 (455)
|++..+.++|+||||+|||+|+..+|..+ +..+..++..... +...+..++. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57777789999999999999999998765 5677777763211 1123333332 2
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 35688999999998763
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.64 E-value=0.00012 Score=87.44 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=53.5
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccCCh------------------------HHHHHHHHh
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLRSN------------------------SDLRRLLVS 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~~~------------------------~~l~~ll~~ 289 (455)
|++..+.++|+||||||||+|+.+++.+. |.....+++...... ..+.+.+..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57778899999999999999999998765 777777776653111 123334455
Q ss_pred hCCceEEEEecccchhhh
Q 047029 290 TGNRSILVIEDIDCSIEL 307 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~~ 307 (455)
...+.+|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 677999999999998553
No 117
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.64 E-value=0.00023 Score=73.82 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CC-cEEEEec
Q 047029 201 DHPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KF-DIYDMEL 274 (455)
Q Consensus 201 ~~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~-~v~~l~~ 274 (455)
..|.+|+.| .+++++.+...+ .++... ...+++.||||||||+++.+++..+ +. .++.+..
T Consensus 18 ~~p~~~~~L--n~~Q~~av~~~~-~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 18 GSHMTFDDL--TEGQKNAFNIVM-KAIKEK----------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp ---CCSSCC--CHHHHHHHHHHH-HHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCccccC--CHHHHHHHHHHH-HHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 345677775 455555554433 333321 2389999999999999999999887 33 4554433
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=3e-05 Score=70.93 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=29.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.+.++|.||||+||||+++++|+.+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 557999999999999999999999999887654
No 119
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.62 E-value=0.00016 Score=69.75 Aligned_cols=29 Identities=28% Similarity=0.239 Sum_probs=24.5
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
|++...-++|+||||+|||+|+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556679999999999999999999754
No 120
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.62 E-value=4.9e-05 Score=67.69 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=30.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~ 275 (455)
++-++|.||||+||||+++++|..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 45789999999999999999999999888876543
No 121
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.61 E-value=5.2e-05 Score=66.81 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=28.7
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
-++|.||||+||||+++.+|+.+++.+++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCcc
Confidence 57899999999999999999999998876653
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.59 E-value=0.00019 Score=67.06 Aligned_cols=26 Identities=35% Similarity=0.426 Sum_probs=23.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMA 262 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA 262 (455)
|++...-+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 55666779999999999999999998
No 123
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=3.3e-05 Score=69.56 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.+.+.-++|.||||+||||+++.++..++..+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 34456799999999999999999999999887653
No 124
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.58 E-value=0.00019 Score=76.67 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=42.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc----------CChHHHHHHHHhhC-----------CceEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL----------RSNSDLRRLLVSTG-----------NRSIL 296 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~----------~~~~~l~~ll~~~~-----------~~~IL 296 (455)
.+.+++.||||||||+++.+++..+ +..+..+-.+.. .....+.+++.... ...+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 4578999999999999999999866 666665533321 01122333332111 34799
Q ss_pred EEecccch
Q 047029 297 VIEDIDCS 304 (455)
Q Consensus 297 ~iDEiD~l 304 (455)
+|||+..+
T Consensus 284 IIDEasml 291 (574)
T 3e1s_A 284 IVDEVSMM 291 (574)
T ss_dssp EECCGGGC
T ss_pred EEcCccCC
Confidence 99999865
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.54 E-value=0.00027 Score=71.35 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=48.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHHh---
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLVS--- 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~~--- 289 (455)
|++..+.++|+||||+|||+|+..+|... +..+..++..... +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667789999999999999999998765 5667766654311 11223333322
Q ss_pred hCCceEEEEecccchh
Q 047029 290 TGNRSILVIEDIDCSI 305 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~ 305 (455)
.....+||||.+..+.
T Consensus 150 ~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALT 165 (366)
T ss_dssp TTCCSEEEEECTTTCC
T ss_pred cCCCCEEEEeChHHhc
Confidence 2457899999999885
No 126
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.53 E-value=0.00029 Score=70.33 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---------CCcEEEEeccc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---------KFDIYDMELAS 276 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---------~~~v~~l~~~~ 276 (455)
|++...-++|+||||+|||+++..+|... +..++.++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 56666779999999999999999999862 45666666543
No 127
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=0.00027 Score=70.82 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
|++...-+.|+||||+|||+|+..+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 66667779999999999999999999887
No 128
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.51 E-value=0.0002 Score=66.12 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
|++...-+.|.||+|+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666679999999999999999999854
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.49 E-value=6.6e-05 Score=68.28 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=37.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc--c------cCC----------hHHHHHHHHhhC-CceEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA--S------LRS----------NSDLRRLLVSTG-NRSILVIE 299 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~--~------~~~----------~~~l~~ll~~~~-~~~IL~iD 299 (455)
.-++++||||+|||+++..++..+ +..++.+... . +.+ ...+..++.... ...+|+||
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 357899999999999997776654 5554443211 0 000 011222333332 46899999
Q ss_pred cccch
Q 047029 300 DIDCS 304 (455)
Q Consensus 300 EiD~l 304 (455)
|+..+
T Consensus 84 E~Q~~ 88 (184)
T 2orw_A 84 EVQFF 88 (184)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99875
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.47 E-value=6e-05 Score=66.67 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=29.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
..++|.|+|||||||+++.+|..+|+++++.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47999999999999999999999999988654
No 131
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.45 E-value=6e-05 Score=67.47 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
++.++|.||||+||||+++++|..+++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45799999999999999999999999887654
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.45 E-value=6.3e-05 Score=67.50 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=28.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
..++|.|+||+||||+++.+|..+|+++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999987654
No 133
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.44 E-value=6.2e-05 Score=67.12 Aligned_cols=30 Identities=33% Similarity=0.455 Sum_probs=27.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++++|+.+++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887754
No 134
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.43 E-value=7.1e-05 Score=67.59 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=28.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHH-cCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY-LKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~-l~~~v~~l~ 273 (455)
+..++|.|+|||||||+++.+|.. +|+++++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999999 787776554
No 135
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.42 E-value=0.00048 Score=68.02 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc-----CCcEEEEecccc---------------------CChHHH-HHHHH-
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL-----KFDIYDMELASL---------------------RSNSDL-RRLLV- 288 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l-----~~~v~~l~~~~~---------------------~~~~~l-~~ll~- 288 (455)
|++.. -++++||||+|||+|+..++... +..+..++...- .+..++ ..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999977766543 455666665321 011222 22221
Q ss_pred ----hhCCceEEEEecccchhh
Q 047029 289 ----STGNRSILVIEDIDCSIE 306 (455)
Q Consensus 289 ----~~~~~~IL~iDEiD~l~~ 306 (455)
....+.+|+||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 224689999999998863
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=0.00011 Score=65.14 Aligned_cols=31 Identities=42% Similarity=0.745 Sum_probs=27.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+..+.|.||||+||||+++.+|+.++..+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3468999999999999999999999986654
No 137
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.40 E-value=0.00032 Score=65.92 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=42.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc---------C-----------------ChHHHHHHHHhhCC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL---------R-----------------SNSDLRRLLVSTGN 292 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~---------~-----------------~~~~l~~ll~~~~~ 292 (455)
-.+++.|+||+|||+++-++|..+ |.++..++...- . .+..+..++. .+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~--~~ 84 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK--AA 84 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH--HC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh--cC
Confidence 469999999999999999999887 777765554320 0 1123444443 35
Q ss_pred ceEEEEecccch
Q 047029 293 RSILVIEDIDCS 304 (455)
Q Consensus 293 ~~IL~iDEiD~l 304 (455)
+.+++|||+...
T Consensus 85 pdlvIVDElG~~ 96 (228)
T 2r8r_A 85 PSLVLVDELAHT 96 (228)
T ss_dssp CSEEEESCTTCB
T ss_pred CCEEEEeCCCCC
Confidence 789999998753
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.39 E-value=0.00071 Score=62.15 Aligned_cols=110 Identities=8% Similarity=0.110 Sum_probs=69.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc--C----------C--------------------hHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL--R----------S--------------------NSDLRR 285 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~--~----------~--------------------~~~l~~ 285 (455)
+..+++|+++|.||||+|-++|-.. |..+..+....- . . ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3468999999999999999999876 778777743221 0 0 011111
Q ss_pred HH----Hhh--CCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCCCCCccc
Q 047029 286 LL----VST--GNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKERLDPAL 359 (455)
Q Consensus 286 ll----~~~--~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld~al 359 (455)
.+ ... ....+|++||+...... .-.....+++.+.. .++..-||+|+|.+ +++|
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~-------------g~l~~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l 167 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAY-------------DYLPLEEVISALNA----RPGHQTVIITGRGC---HRDI 167 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHT-------------TSSCHHHHHHHHHT----SCTTCEEEEECSSC---CHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccC-------------CCCCHHHHHHHHHh----CcCCCEEEEECCCC---cHHH
Confidence 22 222 34689999999765431 11223446666543 34668899999985 5677
Q ss_pred cCCCceeEEEEeC
Q 047029 360 LRPGRMDMHIHMS 372 (455)
Q Consensus 360 lRpGR~d~~I~~~ 372 (455)
+. .-|.+-+|.
T Consensus 168 ~e--~AD~VTem~ 178 (196)
T 1g5t_A 168 LD--LADTVSELR 178 (196)
T ss_dssp HH--HCSEEEECC
T ss_pred HH--hCcceeeec
Confidence 76 667666664
No 139
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.35 E-value=0.0004 Score=68.32 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=24.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
|++...-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5666677999999999999999999875
No 140
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=9.9e-05 Score=66.17 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++-++|.|+||+||||+++.++..++..+++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 356799999999999999999999999877765
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.32 E-value=0.00013 Score=66.58 Aligned_cols=32 Identities=31% Similarity=0.494 Sum_probs=28.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+..++|.||||+||||+++.+|..+++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999887765
No 142
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.32 E-value=0.0001 Score=65.12 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=28.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.++|.|+||+||||+++.+|..+++++++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 36899999999999999999999998877643
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00012 Score=65.75 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.-++|.|+||+||||+++.++..++..+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999877654
No 144
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00013 Score=64.01 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=26.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
-++|.||||+||||+++.+ ..+|+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8899887754
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.28 E-value=0.00037 Score=67.82 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=28.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.+..++|.||||+||||++++++..++...+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 35679999999999999999999998544555554
No 146
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.27 E-value=0.00015 Score=69.18 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=29.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEecc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELA 275 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~ 275 (455)
-++|.||||+||||+++++|+.++..++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 478999999999999999999999988877643
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00014 Score=65.55 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=29.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.-++|.||||+||||+++.+|+.++..+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998877653
No 148
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00017 Score=65.78 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=28.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.-++|.||||+||||+++.+++.+|..+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998777654
No 149
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.24 E-value=0.00015 Score=63.75 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=27.7
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.++|.|+||+||||+++.+++.+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999998887644
No 150
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.23 E-value=0.00014 Score=67.35 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=27.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
..++|.||||+||||+++.+|..+++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999887765
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.22 E-value=0.00016 Score=65.02 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=28.8
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+..+.-+.|.||||+||||+++++|+.++...+.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~ 41 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH 41 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEc
Confidence 344567899999999999999999998766655554
No 152
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.21 E-value=0.00016 Score=65.40 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=28.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.-++|.||||+||||+++.+|..+++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45799999999999999999999999777654
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.21 E-value=0.00013 Score=65.40 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=27.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
..++|.||||+||||+++.+|+.+++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 3589999999999999999999999876644
No 154
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.20 E-value=0.00016 Score=67.31 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=28.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+.-++|.||||+||||+++.+|..++..+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 45799999999999999999999999877654
No 155
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.19 E-value=0.00019 Score=66.44 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+..++|.||||+||||+++.+|+.++..+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 34689999999999999999999999877654
No 156
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00018 Score=66.24 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=27.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++.+|+.++..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999888765
No 157
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.18 E-value=0.00045 Score=65.63 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
..+..++|.||||+||||+++.++..++...+.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 335679999999999999999999999865555555443
No 158
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.18 E-value=0.0006 Score=80.62 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=52.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccccC---------------------ChHHHHHHHHh---
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASLR---------------------SNSDLRRLLVS--- 289 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~~---------------------~~~~l~~ll~~--- 289 (455)
|++..+.++|+||||||||+|+.++|... |..+++++..... ....+.+++..
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 67888899999999999999999998753 6777777765431 12233344333
Q ss_pred hCCceEEEEecccchhh
Q 047029 290 TGNRSILVIEDIDCSIE 306 (455)
Q Consensus 290 ~~~~~IL~iDEiD~l~~ 306 (455)
..++.+|+||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35689999999998865
No 159
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.17 E-value=0.00023 Score=63.64 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=23.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.-++|.||||+||||+++.+|..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 160
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.17 E-value=0.00016 Score=64.06 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=24.6
Q ss_pred CceeEEECCCCCChHHHHHHHHH-HcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN-YLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~-~l~~~v~ 270 (455)
|.-++|.||||+||||+++.+++ .++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 45689999999999999999999 4654443
No 161
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.16 E-value=0.00098 Score=67.98 Aligned_cols=27 Identities=33% Similarity=0.270 Sum_probs=23.1
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHH
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
|++...-++|+||||+|||+|+..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 566667799999999999999997763
No 162
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.0002 Score=65.92 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=27.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++.+|..++..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999887765
No 163
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.15 E-value=0.00023 Score=63.48 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
+.-++|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999998876
No 164
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.14 E-value=0.00038 Score=62.13 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=29.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.-+.|.|++|+||||+++.++..+ |++++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 4468899999999999999999998 888887763
No 165
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00027 Score=62.75 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=26.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
...+.|.||||+||||+++.+++.+|..+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3468999999999999999999999866554
No 166
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.12 E-value=0.00025 Score=64.58 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=28.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.-++|.||||+||||+++.+++.+++.+++.+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 346899999999999999999999998776654
No 167
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00026 Score=66.36 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
..++|.|+||+||||+++.||+.+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999999877654
No 168
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.0017 Score=60.48 Aligned_cols=38 Identities=26% Similarity=0.171 Sum_probs=28.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHH----cCCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANY----LKFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~----l~~~v~~l~~ 274 (455)
|+++..-++++|+||+|||+++..+|.. .+..++.+.+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5666777999999999999999877643 2556665543
No 169
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.10 E-value=0.014 Score=61.71 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=86.9
Q ss_pred cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHH----HcC--Cc-EEEEeccccC-----
Q 047029 211 MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMAN----YLK--FD-IYDMELASLR----- 278 (455)
Q Consensus 211 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~----~l~--~~-v~~l~~~~~~----- 278 (455)
|-+..+++|.+.|.. . +....+.+.++|++|+|||+||+.+++ ... ++ .+.++.+...
T Consensus 132 GR~~~~~~l~~~L~~----~------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDE----M------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHH----H------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhc----c------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 888888888777632 1 112246789999999999999999997 232 22 1223333210
Q ss_pred -------------------------ChHHHHHHHHhh--CC-ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhh
Q 047029 279 -------------------------SNSDLRRLLVST--GN-RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLN 330 (455)
Q Consensus 279 -------------------------~~~~l~~ll~~~--~~-~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~ 330 (455)
+...+...+... .+ +.+|||||++.... + .+
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~------------------~-~~-- 260 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET------------------I-RW-- 260 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH------------------H-HH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh------------------h-cc--
Confidence 001122333221 33 78999999985311 1 11
Q ss_pred hhhcccccCCCceEEEEEcCCCCCCCccccCCCceeEEEEeCCCCHHHHHHHHHHhhcccCC-CchH-HHHHhhccccCc
Q 047029 331 FVDGLWSSCGDERIIVFTTNYKERLDPALLRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSH-SMFD-EIEELIKEVEVT 408 (455)
Q Consensus 331 ~ldg~~~~~~~~~ivI~TTN~~~~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~-~l~~-ei~~ll~~~~~t 408 (455)
.+. .+..||+||...... .. .+-.+..++++..+.++-.+|+..+...... .... ...++++...-.
T Consensus 261 --~~~-----~gs~ilvTTR~~~v~---~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 261 --AQE-----LRLRCLVTTRDVEIS---NA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp --HHH-----TTCEEEEEESBGGGG---GG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred --ccc-----CCCEEEEEcCCHHHH---HH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 111 223466777653221 11 1123456899999999999999988533221 2222 234444444445
Q ss_pred hh
Q 047029 409 PA 410 (455)
Q Consensus 409 pa 410 (455)
|.
T Consensus 330 PL 331 (549)
T 2a5y_B 330 PA 331 (549)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00041 Score=63.32 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=26.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
+.-+.|.||+|+||||+++++++.+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 456899999999999999999999976544
No 171
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.06 E-value=0.00046 Score=61.86 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=28.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
-+.|.|+||+||||+++.+++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37899999999999999999998 898887763
No 172
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00019 Score=66.60 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=27.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+..++|.||||+||||+++.+|+.++..+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999976554
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00034 Score=66.16 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=28.9
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.+.-++|.||||+||||+++.+++.++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 356799999999999999999999998877755
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.00 E-value=0.00049 Score=64.32 Aligned_cols=31 Identities=19% Similarity=0.421 Sum_probs=27.2
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.++-++|.||||+||+|.|+.||+.+|+..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 3567899999999999999999999987654
No 175
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.99 E-value=0.00032 Score=64.71 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=27.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
.++|.||||+||||+++.+|..+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999887665
No 176
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.98 E-value=0.00046 Score=68.33 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=30.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
++.++|.||+|+|||+++.++|+.++..+++.|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 4579999999999999999999999988888764
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.95 E-value=0.00023 Score=71.26 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 213 PVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
+.+.+.+++.+...+.. | ....++|.||||+|||++++++|+.++++++
T Consensus 5 ~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp HHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 45666666666543322 1 1246999999999999999999999987773
No 178
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.93 E-value=0.00056 Score=64.50 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=26.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+.-+.|.||||+||||+++.||+.+|...++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4579999999999999999999999876543
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00065 Score=62.75 Aligned_cols=30 Identities=37% Similarity=0.607 Sum_probs=26.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.-+.|.||+|+||||+++.+++.+|+++++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987765
No 180
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.0022 Score=60.11 Aligned_cols=62 Identities=13% Similarity=0.215 Sum_probs=40.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc-------c-------------CChHHHHHHHHhh---CCceEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS-------L-------------RSNSDLRRLLVST---GNRSIL 296 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~-------~-------------~~~~~l~~ll~~~---~~~~IL 296 (455)
-++++||||+||||++..++..+ +..++.+.... + ....++.+.+... ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 47888999999999998888776 55666553111 1 0112344433332 247899
Q ss_pred EEecccch
Q 047029 297 VIEDIDCS 304 (455)
Q Consensus 297 ~iDEiD~l 304 (455)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999865
No 181
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.90 E-value=0.00072 Score=60.82 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.7
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.|.||+|+||||+++.+++.+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999999 998876543
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00065 Score=61.54 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=29.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~~ 274 (455)
+.-+.|.||||+||||+++.+++.+ |++++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3468999999999999999999999 688877654
No 183
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00062 Score=63.36 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=26.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
-++|.||||+||||+++.+|..+++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999999776554
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.00041 Score=63.12 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=27.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
-+.|.||+|+||||+++.+|+ +|+.+++.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 478999999999999999999 8888776653
No 185
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.88 E-value=0.0017 Score=57.78 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=17.5
Q ss_pred CceeEEECCCCCChHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAA 260 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~a 260 (455)
..-+.|.||+|+|||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44589999999999999993
No 186
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00061 Score=61.53 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=25.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
-+.|.|+||+||||+++.+|+.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998655
No 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.87 E-value=0.006 Score=69.00 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc------CCcEEEEecc
Q 047029 210 AMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL------KFDIYDMELA 275 (455)
Q Consensus 210 ~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l------~~~v~~l~~~ 275 (455)
+|-+...++|.+.+.. . ...+-+.++||+|.|||+||+.+++.. ...++-++++
T Consensus 131 VGRe~eLeeL~elL~~----~--------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs 190 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----L--------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----C--------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC
T ss_pred CCcHHHHHHHHHHHhc----c--------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeC
Confidence 6767777777666541 0 124678999999999999999998642 4445555544
No 188
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00044 Score=61.80 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=22.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-++|.||||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999886
No 189
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.0013 Score=59.59 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=26.1
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC--cEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF--DIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l 272 (455)
.-++|.||||+||||+++.+++.++. +++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 46889999999999999999999876 35443
No 190
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.84 E-value=0.00069 Score=62.70 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=25.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.++|.||||+||+|.|+.||+.+|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37889999999999999999999876643
No 191
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.84 E-value=0.001 Score=60.53 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=26.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+.-+.|.||+|+||||+++++|..+ |...+.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4568899999999999999999998 54434444
No 192
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00058 Score=65.19 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=29.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
...+.|.||+|+||||+++.+|+.+++++++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 457999999999999999999999999888754
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.79 E-value=0.0062 Score=62.62 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhHH-HHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 213 PVLKQALIDDLDRFVKRRE-FYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~-~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.+.+.+.+.+...+.... ..... ...++-+++.||+|+||||++..+|..+ |..+..+++
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3445555565555544311 11110 1235678999999999999999999887 566655543
No 194
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.79 E-value=0.001 Score=60.35 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=28.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
-+.|.||+|+||||+++.+|..+|+++++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999999888754
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.78 E-value=0.00054 Score=62.51 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=26.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.+.|.||+|+||||+++.+|+ +|..+++.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 578999999999999999998 888887654
No 196
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.77 E-value=0.0067 Score=56.97 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=26.4
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.+++.||+|+|||.++.+++..++..++.+-
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 5899999999999999999998876666554
No 197
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.77 E-value=0.00096 Score=63.00 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=28.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
+..+.|.||||+||||+++.+|+.+++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 44689999999999999999999999887654
No 198
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.77 E-value=0.0061 Score=62.98 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=61.5
Q ss_pred ceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCC-------------CCCCCccc
Q 047029 293 RSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNY-------------KERLDPAL 359 (455)
Q Consensus 293 ~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~-------------~~~Ld~al 359 (455)
|.|++|||+|.+. ....+.|+..|+.- +.. ++|++||. ++.|+|.+
T Consensus 296 ~~VliIDEa~~l~----------------~~a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i 354 (456)
T 2c9o_A 296 PGVLFVDEVHMLD----------------IECFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDL 354 (456)
T ss_dssp ECEEEEESGGGCB----------------HHHHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHH
T ss_pred ceEEEEechhhcC----------------HHHHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhH
Confidence 4799999999873 24567777777643 233 45555543 77899999
Q ss_pred cCCCceeEEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHh
Q 047029 360 LRPGRMDMHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEEL 401 (455)
Q Consensus 360 lRpGR~d~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~l 401 (455)
++ ||.. +.+++++.++..++++..+...+..+.++...+
T Consensus 355 ~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~ 393 (456)
T 2c9o_A 355 LD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNH 393 (456)
T ss_dssp HT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHH
T ss_pred Hh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99 9976 699999999999999988765554444444333
No 199
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.76 E-value=0.00066 Score=62.12 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=28.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.-+.|.|++||||||+++.++..+|+++++.|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45889999999999999999999998887755
No 200
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.73 E-value=0.0022 Score=69.34 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=37.7
Q ss_pred CCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc
Q 047029 205 TFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS 276 (455)
Q Consensus 205 tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~ 276 (455)
.|-+-.+++.+++.+...+. . +.-.|++||||||||+++..+...+ +..+..+..+.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred cccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 33333568888888877653 1 2257999999999997766665554 56665555443
No 201
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.71 E-value=0.0019 Score=64.88 Aligned_cols=60 Identities=30% Similarity=0.521 Sum_probs=38.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC----CcEEEEecc-cc---------------CChHHHHHHHHhh--CCceEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK----FDIYDMELA-SL---------------RSNSDLRRLLVST--GNRSILVIED 300 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~----~~v~~l~~~-~~---------------~~~~~l~~ll~~~--~~~~IL~iDE 300 (455)
.+++.||+|+||||+++++++.+. ..++.+.-. .. .....+...+..+ .+|.||++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 589999999999999999999873 333332210 00 0111233333332 4799999999
Q ss_pred cc
Q 047029 301 ID 302 (455)
Q Consensus 301 iD 302 (455)
+-
T Consensus 205 p~ 206 (356)
T 3jvv_A 205 MR 206 (356)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 202
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00089 Score=60.51 Aligned_cols=32 Identities=22% Similarity=0.407 Sum_probs=27.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+..+.|.|++|+||||+++.+|+. |+.+++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 346899999999999999999998 88887654
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.66 E-value=0.00056 Score=62.38 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
+.-+.|.|+||+||||+++.+++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999987543
No 204
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.65 E-value=0.0013 Score=62.69 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH---cCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY---LKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~---l~~~v~~l~ 273 (455)
.-++|.|+||+||||+++.++.. .|+.++.++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46899999999999999999998 688777444
No 205
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.62 E-value=0.0037 Score=64.38 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=44.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecccc------------------------C--Ch-HHHHHHHHhh
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELASL------------------------R--SN-SDLRRLLVST 290 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~~------------------------~--~~-~~l~~ll~~~ 290 (455)
++.+++.||||+||||++..+|..+ |..+..+++... . +. .-+.+.+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987 456665554311 0 00 1234455555
Q ss_pred CCceEEEEecccch
Q 047029 291 GNRSILVIEDIDCS 304 (455)
Q Consensus 291 ~~~~IL~iDEiD~l 304 (455)
....+++||....+
T Consensus 179 ~~~D~vIIDT~G~~ 192 (432)
T 2v3c_C 179 KKADVLIIDTAGRH 192 (432)
T ss_dssp SSCSEEEEECCCSC
T ss_pred hCCCEEEEcCCCCc
Confidence 56789999998754
No 206
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.59 E-value=0.013 Score=51.93 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..+++.|++|+|||+|+.++.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 207
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.58 E-value=0.0088 Score=54.77 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=40.5
Q ss_pred ceeEEECCCCCChH-HHHHHHHHHc--CCcEEEEecc-------ccCC----------hHHHHHHHHhhCCceEEEEecc
Q 047029 242 RGYLLYGPPGTGKS-SLIAAMANYL--KFDIYDMELA-------SLRS----------NSDLRRLLVSTGNRSILVIEDI 301 (455)
Q Consensus 242 rg~LL~GPpGTGKT-sla~alA~~l--~~~v~~l~~~-------~~~~----------~~~l~~ll~~~~~~~IL~iDEi 301 (455)
+-+++|||.|+||| .|++++.++. +..++.+... .+.+ .....+++....+-.+|+|||+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlIDEa 100 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDEG 100 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEESSG
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEEch
Confidence 45889999999999 9999998876 6677666532 0100 0011112222234579999999
Q ss_pred cch
Q 047029 302 DCS 304 (455)
Q Consensus 302 D~l 304 (455)
..+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 976
No 208
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.55 E-value=0.0018 Score=61.41 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=27.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.-+.|.||+|+||||+++.+|+.+|+.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 468899999999999999999999987765
No 209
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.55 E-value=0.0012 Score=60.60 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=28.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
..+.|.|++|+|||++++.+|..+|+++++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46899999999999999999999998887654
No 210
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.0025 Score=57.08 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=26.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC---CcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK---FDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~ 273 (455)
+.-++|.|+||+||||+++.+|..++ ..+..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 45689999999999999999999884 4454444
No 211
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.52 E-value=0.013 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.52 E-value=0.0016 Score=59.57 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.4
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.+.++-++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 44566799999999999999999999885
No 213
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.52 E-value=0.0013 Score=60.62 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=27.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.-+.|.|++|+||||+++.++. +|+.+++.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 34688999999999999999998 888777654
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.0017 Score=58.19 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=23.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.+-+.|.||+|+|||||++.+++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45689999999999999999999864
No 215
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.48 E-value=0.00083 Score=61.30 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=23.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-+.|.|+||+||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999874
No 216
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.46 E-value=0.0011 Score=60.62 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-CCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-KFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-~~~v~~l~ 273 (455)
+.-+.|.||||+||||+++.+++.+ +..++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3457899999999999999999988 55554433
No 217
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0023 Score=59.82 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+..+.|.||+|+||||+++.+|+.+|+.+++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d 48 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTG 48 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCC
Confidence 345889999999999999999999998877643
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.43 E-value=0.0024 Score=59.37 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=28.9
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|++...-++|+||||+|||+++..+|... +..++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56667779999999999999988887653 455555543
No 219
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.43 E-value=0.0019 Score=57.92 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.2
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
-+.|.||+|+||||+++.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5789999999999999999987654
No 220
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.40 E-value=0.0017 Score=58.83 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.+.-+.|.||+|+||||+++.+++.+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568999999999999999999987
No 221
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.40 E-value=0.0012 Score=63.94 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=25.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc-CCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL-KFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l-~~~v~ 270 (455)
+.-++|.||||+||||+++.++..+ ++.++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 3568999999999999999999974 65554
No 222
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.39 E-value=0.0018 Score=61.33 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=25.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
+.-+.|.||||+||||+++.++..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 4468999999999999999999999876
No 223
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0071 Score=55.06 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
+.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458899999999999999999986 6667666444
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.36 E-value=0.024 Score=60.18 Aligned_cols=74 Identities=5% Similarity=0.068 Sum_probs=48.9
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC--CCCccccCCCceeEEEEe
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE--RLDPALLRPGRMDMHIHM 371 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~--~Ld~allRpGR~d~~I~~ 371 (455)
-+|+|||+..++... .. .+...+..+-..-.. -++-+|++|.+|. .|+..++. -|...|.+
T Consensus 345 ivvVIDE~~~L~~~~------------~~-~~~~~L~~Iar~GRa--~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~l 407 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------------GK-KVEELIARIAQKARA--AGIHLILATQRPSVDVITGLIKA--NIPTRIAF 407 (574)
T ss_dssp EEEEESCCTTHHHHT------------CH-HHHHHHHHHHHHCTT--TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEE
T ss_pred EEEEEeCHHHHhhhh------------hH-HHHHHHHHHHHHHhh--CCeEEEEEecCcccccccHHHHh--hhccEEEE
Confidence 589999999876411 01 122233333222222 4588889998886 78887776 78888999
Q ss_pred CCCCHHHHHHHHH
Q 047029 372 SYLTPGGFKILAF 384 (455)
Q Consensus 372 ~~p~~~~~~~L~~ 384 (455)
...+..+.+.++.
T Consensus 408 rv~s~~Dsr~ILd 420 (574)
T 2iut_A 408 QVSSKIDSRTILD 420 (574)
T ss_dssp CCSCHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9888888776663
No 225
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.34 E-value=0.0095 Score=61.52 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.0
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~ 274 (455)
|+++..-++|.||||+|||+++..+|..+ |.++..+++
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666679999999999999999998765 456666553
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.34 E-value=0.0016 Score=64.86 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=31.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEecccc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASL 277 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~ 277 (455)
+-++|.||+|+|||+|+..||+.++..+++.|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 468999999999999999999999988887776543
No 227
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.32 E-value=0.0081 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.31 E-value=0.022 Score=59.79 Aligned_cols=74 Identities=5% Similarity=0.020 Sum_probs=47.5
Q ss_pred eEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhcccccCCCceEEEEEcCCCC--CCCccccCCCceeEEEEe
Q 047029 294 SILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSSCGDERIIVFTTNYKE--RLDPALLRPGRMDMHIHM 371 (455)
Q Consensus 294 ~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~~~~~~ivI~TTN~~~--~Ld~allRpGR~d~~I~~ 371 (455)
-+|+|||...++... ......++..+-..... -++-+|++|.++. .++..++. -+...|.+
T Consensus 299 ivlvIDE~~~ll~~~-------------~~~~~~~l~~Lar~gRa--~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~l 361 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-------------GKKVEELIARLAQKARA--AGIHLVLATQRPSVDVITGLIKA--NIPTRIAF 361 (512)
T ss_dssp EEEEEETHHHHHHHH-------------HHHHHHHHHHHHHHCGG--GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEE
T ss_pred EEEEEeCHHHHHhhh-------------hHHHHHHHHHHHHHhhh--CCcEEEEEecCCccccccHHHHh--hcCCeEEE
Confidence 389999998775410 01122333333222112 2477888888876 57777776 78888999
Q ss_pred CCCCHHHHHHHHH
Q 047029 372 SYLTPGGFKILAF 384 (455)
Q Consensus 372 ~~p~~~~~~~L~~ 384 (455)
...+..+.+.++.
T Consensus 362 rv~s~~dsr~ilg 374 (512)
T 2ius_A 362 TVSSKIDSRTILD 374 (512)
T ss_dssp CCSSHHHHHHHHS
T ss_pred EcCCHHHHHHhcC
Confidence 9999888887765
No 229
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.31 E-value=0.0018 Score=59.70 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=26.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
.++++|.||+|+|||+++.+++...+ .++..|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 56899999999999999999999876 554433
No 230
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.30 E-value=0.0025 Score=62.66 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=29.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
++-+++.||+|+|||+|+..+|+.++..++..|.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 5578899999999999999999999877776654
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.30 E-value=0.0081 Score=58.57 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=41.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccccC----------------------ChHHHHHHHHhhCCce
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELASLR----------------------SNSDLRRLLVSTGNRS 294 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~~~----------------------~~~~l~~ll~~~~~~~ 294 (455)
++.++|.||+|+||||++..+|..+ |..+..++..... +...++..+.....+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 5578999999999999999999876 4466655543221 1123444444455678
Q ss_pred EEEEecc
Q 047029 295 ILVIEDI 301 (455)
Q Consensus 295 IL~iDEi 301 (455)
+++||-.
T Consensus 185 lvIiDT~ 191 (296)
T 2px0_A 185 HVFVDTA 191 (296)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999943
No 232
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.27 E-value=0.0031 Score=57.85 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC----CcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK----FDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~----~~v~~l~ 273 (455)
+.-++|.|+||+||||+++.+++.++ .+++.++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 45688999999999999999999875 4466555
No 233
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.25 E-value=0.017 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
.+++.|++|+|||+|+.++++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 234
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.22 E-value=0.0025 Score=58.52 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
++-+.|.||+|+||||+++.|+..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445889999999999999999998853
No 235
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.21 E-value=0.0022 Score=62.00 Aligned_cols=32 Identities=31% Similarity=0.267 Sum_probs=26.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+.-+.|.|+||+||||+++.++ .+|+++++.+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 3468999999999999999999 6888776654
No 236
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.014 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=22.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...++|.|++|+|||+|+.++++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999864
No 237
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.19 E-value=0.004 Score=57.01 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44578999999999999999999885
No 238
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.18 E-value=0.0039 Score=64.28 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=61.9
Q ss_pred HHHHhhCCceEEEEecccchhhhhhhcCCCCCCCCcchhhHhhhhhhhhccccc------CCCceEEEEEc-----CCCC
Q 047029 285 RLLVSTGNRSILVIEDIDCSIELENRQCGGGYDENNSQVTLSGLLNFVDGLWSS------CGDERIIVFTT-----NYKE 353 (455)
Q Consensus 285 ~ll~~~~~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~ls~LL~~ldg~~~~------~~~~~ivI~TT-----N~~~ 353 (455)
..+..+....|+++||||.+... ......+....-....||..+||...+ ...++++|+|. |..+
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~----~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d 318 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKK----GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 318 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCC----SSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG
T ss_pred HHHHHhccCCeeeHHHHHHHhhc----cCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh
Confidence 34444446779999999998531 111111111222456789999984221 12568888887 4444
Q ss_pred CCCccccCCCceeEEEEeCCCCHHHHHHHHH
Q 047029 354 RLDPALLRPGRMDMHIHMSYLTPGGFKILAF 384 (455)
Q Consensus 354 ~Ld~allRpGR~d~~I~~~~p~~~~~~~L~~ 384 (455)
+-|.|+. ||..+|.++.++.+++..|+.
T Consensus 319 -lipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 319 -LIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp -SCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred -cchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 4578887 999999999999999998883
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.17 E-value=0.0032 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||+|+||||+++.+++.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999864
No 240
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0099 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998643
No 241
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.13 E-value=0.017 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=18.0
Q ss_pred CceeEEECCCCCChHHH-HHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSL-IAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsl-a~alA~~ 264 (455)
.+.+++.+|+|+|||.. +..+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 36799999999999976 3444444
No 242
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.12 E-value=0.0035 Score=57.57 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=27.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.-+.|.||+|||||++++.+|+.||+++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 468899999999999999999999999985
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.12 E-value=0.0048 Score=60.43 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhc--CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 213 PVLKQALIDDLDRFVKRREFYSRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.+++.+.+.+...+........+. ...+.-+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456666666665554321001222 3344568899999999999999999987
No 244
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.10 E-value=0.0018 Score=66.24 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
+.-++|.||||+||||+++.++..+++.+++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 4568999999999999999999999866543
No 245
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.09 E-value=0.025 Score=48.33 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.08 E-value=0.0029 Score=62.96 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
+-+.|.||+|+|||+++..+|..++..++..|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999987666654
No 247
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.06 E-value=0.028 Score=51.39 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=33.5
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcC---CCCceeEEECCCCCChHHH-HHHHHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGK---AWKRGYLLYGPPGTGKSSL-IAAMANY 264 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGTGKTsl-a~alA~~ 264 (455)
.+|+++...+.+.+.+.+.= +..+..++...+ ...+.+++.+|+|+|||.. +-.+...
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 57999988887776664420 111111111111 1136799999999999976 3344433
No 248
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.05 E-value=0.051 Score=46.45 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.7
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 249
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.04 E-value=0.02 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.1
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.03 E-value=0.0035 Score=56.31 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+-+.|.||+|+||||+++.+++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999874
No 251
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.02 E-value=0.017 Score=50.38 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 252
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.01 E-value=0.025 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 253
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.01 E-value=0.031 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.99 E-value=0.0036 Score=57.09 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
++-+.|.||+|+|||||++.+++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45789999999999999999999763
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.99 E-value=0.0038 Score=61.48 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=28.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
+-+++.||+|+|||+|+..+|..++..++..|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 457899999999999999999999876665554
No 256
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.98 E-value=0.034 Score=49.03 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468999999999999999988754
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.98 E-value=0.003 Score=57.63 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-+.|.||+|+||||+++.+++.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999987
No 258
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.97 E-value=0.019 Score=63.29 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=19.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.||+|+|||+++..++..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999977777544
No 259
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.97 E-value=0.026 Score=51.53 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC---CCceeEEECCCCCChHHHHHHHHH
Q 047029 202 HPSTFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA---WKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 202 ~p~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
+..+|+++...+.+.+.+.+.= +..+..++...++ ..+.+++.+|+|+|||..+...+-
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHH
Confidence 3457888888887777665410 1111111111111 135799999999999976554443
No 260
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.96 E-value=0.014 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.93 E-value=0.0054 Score=54.18 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
++...-+.|.||.|+|||||++++++.+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444458899999999999999999988
No 262
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.93 E-value=0.036 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 263
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.93 E-value=0.0046 Score=60.70 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=27.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
.+++...+.|.||+|+|||||++.|++.+.-.+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 466667799999999999999999999984333
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0078 Score=62.01 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 213 PVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.+++.+.+.|...+..+...... ...+.-+++.||+|+||||++..+|..+ |..+..+++
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345556666666554431111111 1135678999999999999999999887 566665554
No 265
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.90 E-value=0.025 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 266
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.90 E-value=0.016 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 267
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.89 E-value=0.022 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...+++.|++|+|||+|+.++.+.-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998754
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.0085 Score=58.78 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 215 LKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 215 ~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+++.+.+.+...+.....+ .+....++-+++.||+|+||||++..+|..+ +..+..+++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKL-NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCC-CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCC-cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 4555555555444322100 1112334568999999999999999999887 455655544
No 269
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.86 E-value=0.0056 Score=55.67 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=38.2
Q ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCchHHHHHhhcccc--Cchh-----HHHhccCCHHHHHHHHHHHHH
Q 047029 367 MHIHMSYLTPGGFKILAFNYLKIKSHSMFDEIEELIKEVE--VTPA-----EEFMKSEDADVALNGLVDFLL 431 (455)
Q Consensus 367 ~~I~~~~p~~~~~~~L~~~~l~~~~~~l~~ei~~ll~~~~--~tpa-----~~l~~~~~~~~al~~l~~~l~ 431 (455)
..|.+-+|+.+..++-+... +....++|.+.+..+. +.-+ .+++-++|.+.|++.|.+.+.
T Consensus 116 ~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 116 RFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 183 (186)
T ss_dssp EEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECSSHHHHHHHHHHHHT
T ss_pred eEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhccccCCcEEEECcCHHHHHHHHHHHHH
Confidence 56888899988766544433 3344566665554322 1111 234568899999999988774
No 270
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0067 Score=60.88 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhc--CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 213 PVLKQALIDDLDRFVKRREFYSRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 213 ~~~k~~l~~~l~~~l~~~~~~~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.+++.+.+.|...+........+. ...+.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455555555555553321001222 3344568999999999999999999987
No 271
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.84 E-value=0.0068 Score=65.13 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=30.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
+.-++|.|+||+||||++++++..+ |.+++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 4568999999999999999999999 999988863
No 272
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.029 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-.+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999875
No 273
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.83 E-value=0.013 Score=50.40 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.0
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
-+++.|+||+|||+|+.++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999864
No 274
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.82 E-value=0.011 Score=66.38 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=55.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc-----CCc----EEEE----------eccc-cC--------ChHHHHHHHHhhC
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL-----KFD----IYDM----------ELAS-LR--------SNSDLRRLLVSTG 291 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l-----~~~----v~~l----------~~~~-~~--------~~~~l~~ll~~~~ 291 (455)
..+-+.|.||.|+||||+.+.+|... |.. -..+ ...+ +. .-.++..++..+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34569999999999999999987532 211 0111 1111 00 0123334445567
Q ss_pred CceEEEEecccchhhhhhhcCCCCCCCCcchhhH-hhhhhhhhcccccCCCceEEEEEcCCCCCCC
Q 047029 292 NRSILVIEDIDCSIELENRQCGGGYDENNSQVTL-SGLLNFVDGLWSSCGDERIIVFTTNYKERLD 356 (455)
Q Consensus 292 ~~~IL~iDEiD~l~~~~~~~~~~~~~~~~~~~~l-s~LL~~ldg~~~~~~~~~ivI~TTN~~~~Ld 356 (455)
.|++|++||...-.+ ......+ ..++..+- .. .+..+|++|++.+...
T Consensus 752 ~p~LlLLDEP~~GlD------------~~~~~~i~~~il~~L~---~~--~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 752 SQSLVILDELGRGTS------------THDGIAIAYATLEYFI---RD--VKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TTCEEEEESTTTTSC------------HHHHHHHHHHHHHHHH---HT--TCCEEEEECSCGGGGG
T ss_pred CCCEEEEeCCCCCCC------------HHHHHHHHHHHHHHHH---Hh--cCCeEEEEeCcHHHHH
Confidence 899999999875332 1112222 24444432 11 2357888998865543
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.81 E-value=0.0074 Score=63.00 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.-+.|.||+|+||||+++.||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4458899999999999999999987
No 276
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.80 E-value=0.0052 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|+|||||++.|++.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4458899999999999999999987
No 277
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.80 E-value=0.0055 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=23.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||+|+|||||+++|++.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44588999999999999999999884
No 278
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.79 E-value=0.018 Score=64.66 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.1
Q ss_pred CceeEEECCCCCChHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~ 263 (455)
.+-++|.||.|+||||+++.+|.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999953
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.77 E-value=0.012 Score=57.99 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhHHHH---hhhc--CCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 215 LKQALIDDLDRFVKRREFY---SRVG--KAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 215 ~k~~l~~~l~~~l~~~~~~---~~~g--~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
+++.+.+.+...+.....- ..+. ...++-+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5555555665555432100 1122 2345568999999999999999999887 5666666554
No 280
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.77 E-value=0.021 Score=59.80 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
++.+++.|+||+||||++..+|..+ |..+..+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 5579999999999999999999877 666666555
No 281
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.72 E-value=0.0087 Score=58.22 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-+.+.||+|+||||+++.++..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44688999999999999999999885
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.72 E-value=0.0071 Score=57.87 Aligned_cols=26 Identities=42% Similarity=0.658 Sum_probs=22.9
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+..-++|.||+|+||||+++++++.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 34458999999999999999999976
No 283
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.72 E-value=0.0085 Score=64.47 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...++.||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999888887665
No 284
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.71 E-value=0.022 Score=63.02 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.+-+.|.||.|+||||+++.+|..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 456899999999999999999975
No 285
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.69 E-value=0.025 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 286
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.69 E-value=0.0058 Score=58.99 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=29.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEe
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDME 273 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~ 273 (455)
|++...-++|.||||+|||+|+..+|..+ |..+..+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56666779999999999999999999876 43454443
No 287
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.68 E-value=0.0073 Score=55.41 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=23.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
++-+.|.||+|+|||||+++|++...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999875
No 288
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.66 E-value=0.077 Score=54.94 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999998765
No 289
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.65 E-value=0.0059 Score=62.13 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~l~ 273 (455)
++-+++.||+|+|||+|+..+|..++..++..|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 456889999999999999999999987766554
No 290
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.033 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 291
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.63 E-value=0.0089 Score=55.92 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=25.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC--CcEEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK--FDIYDM 272 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~--~~v~~l 272 (455)
.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 3478889999999999999999996 455433
No 292
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.02 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.0
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
.+++.|++|+|||+|+.++.+.-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 293
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.60 E-value=0.1 Score=50.67 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=33.1
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcC----CCCceeEEECCCCCChHHHHHHHHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGK----AWKRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~----~~~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.+|+++...+.+.+.+.+.= +..+..++...+ ..++.+++.+|+|+|||..+...+-.
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKG---FEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 46778877777766654410 011111111111 11368999999999999876554433
No 294
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.60 E-value=0.037 Score=49.79 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=15.5
Q ss_pred CceeEEECCCCCChHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIA 259 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~ 259 (455)
.+++++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999996433
No 295
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.59 E-value=0.0072 Score=56.85 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
-+-|.||||+||||+++.||+.+++..+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 456889999999999999999999887643
No 296
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.59 E-value=0.023 Score=49.14 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|+||+|||+|+.++.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999753
No 297
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.58 E-value=0.021 Score=56.01 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=31.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
|+++..-++|.|+||+|||+++..+|... +.++..+.+.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 67777779999999999999999998765 4566666544
No 298
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.54 E-value=0.032 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 299
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.52 E-value=0.0083 Score=55.83 Aligned_cols=28 Identities=39% Similarity=0.511 Sum_probs=23.8
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+...-+.|.||+|+|||||++++++.+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445688999999999999999999875
No 300
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.51 E-value=0.0069 Score=61.03 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=24.1
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.+...+++.||+|+||||+++++++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445568999999999999999999976
No 301
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.021 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.7
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
.+++.|++|+|||+|+.++.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 302
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.46 E-value=0.044 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.8
Q ss_pred CCceeEEECCCCCChHHHHHHHHH
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
..-.+++.|++|+|||+|+.++.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999864
No 303
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.46 E-value=0.0075 Score=56.38 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=27.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.-+.+.|++|||||++++.+|..+|+++++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999999999876
No 304
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.46 E-value=0.04 Score=53.65 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=28.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
++-+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4568888999999999999999887 6666665554
No 305
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.43 E-value=0.02 Score=58.60 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=22.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-+++.||+|+||||+++++++.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999884
No 306
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.41 E-value=0.031 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 307
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.41 E-value=0.033 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 308
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.39 E-value=0.022 Score=51.82 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=39.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc--c------cCC----------hHHHHHHHHhhC-CceEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA--S------LRS----------NSDLRRLLVSTG-NRSILVIE 299 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~--~------~~~----------~~~l~~ll~~~~-~~~IL~iD 299 (455)
+-++++||+|+|||+.+..+|..+ +..++.+... . +.+ -....+++.... ...+|+||
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvViID 88 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIAID 88 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEEEE
Confidence 357889999999999998888876 6666554311 0 000 011123444333 35799999
Q ss_pred cccch
Q 047029 300 DIDCS 304 (455)
Q Consensus 300 EiD~l 304 (455)
|+..+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99875
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.39 E-value=0.0033 Score=57.25 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-+.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999999985
No 310
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.36 E-value=0.042 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 311
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.33 E-value=0.024 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=21.1
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999997654
No 312
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.33 E-value=0.009 Score=54.31 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.2
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-+.|.||+|+||||+++.+++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
No 313
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.33 E-value=0.0099 Score=55.84 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
.-+-|.||+|+||||+++.+++.+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347889999999999999999988753
No 314
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.33 E-value=0.089 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..-+++.|++|+|||+|+.++.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 315
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.32 E-value=0.0092 Score=53.96 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=28.1
Q ss_pred eEEECCCCCChHHHHHHHHHHcCCcEEEEeccc
Q 047029 244 YLLYGPPGTGKSSLIAAMANYLKFDIYDMELAS 276 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~ 276 (455)
+|++|++|+|||++|..+|.. +.+++++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888777654
No 316
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.32 E-value=0.043 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+..+.+.
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 36999999999999999999764
No 317
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.31 E-value=0.018 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 318
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.29 E-value=0.064 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 319
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.27 E-value=0.015 Score=64.47 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=28.6
Q ss_pred cCHHHHHHHHHHHHHHHHhHHHHhhhcCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 211 MDPVLKQALIDDLDRFVKRREFYSRVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 211 g~~~~k~~l~~~l~~~l~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+++.+++.+...+. ..-.++.||||||||+++..++..+
T Consensus 357 Ln~~Q~~Av~~~l~----------------~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQ----------------RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp CCHHHHHHHHHHHT----------------SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcc----------------CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 46667766654432 2367999999999999888887765
No 320
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.025 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 321
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.23 E-value=0.043 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999876
No 322
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.23 E-value=0.038 Score=47.53 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
.+++.|+||+|||+|+.++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999963
No 323
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.21 E-value=0.043 Score=64.07 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+..-+.+.||+|+|||||++.+.+++.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 344588999999999999999999884
No 324
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.19 E-value=0.023 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 325
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.18 E-value=0.019 Score=56.90 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=23.3
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.+.-+.|.||+|+||||+++.+|..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999987
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.16 E-value=0.0064 Score=56.45 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=15.9
Q ss_pred CceeEEECCCCCChHHHHHHHH-HHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMA-NYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA-~~l~ 266 (455)
..-+.|.||+|+||||+++.++ +.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4458899999999999999999 8763
No 327
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.15 E-value=0.01 Score=53.34 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
.+|+||.||+|+|||+++.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 579999999999999999999884 4443
No 328
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.15 E-value=0.0072 Score=63.54 Aligned_cols=62 Identities=15% Similarity=0.358 Sum_probs=40.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC--CcEEEEeccc-cC-----------------ChHHHHHHHHhh--CCceEEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK--FDIYDMELAS-LR-----------------SNSDLRRLLVST--GNRSILVI 298 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~--~~v~~l~~~~-~~-----------------~~~~l~~ll~~~--~~~~IL~i 298 (455)
+.++++.||+|+||||+++++++.+. ..++.++-.. +. ..-.+..++... .+|.++++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iiv 339 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIV 339 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEe
Confidence 45799999999999999999999884 3344443211 10 111234444332 36889999
Q ss_pred eccc
Q 047029 299 EDID 302 (455)
Q Consensus 299 DEiD 302 (455)
.|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 329
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.14 E-value=0.013 Score=52.52 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.9
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
....-+.+.||+|+||||++..++..+
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 334578999999999999999999875
No 330
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.14 E-value=0.053 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.++|.|++|+|||+|+.++.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 331
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.10 E-value=0.11 Score=51.18 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCCcccccCHHHHHHHHHHHH-HHH-HhHHHHhhhcCCCCceeEEECCCCCChHHHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLD-RFV-KRREFYSRVGKAWKRGYLLYGPPGTGKSSLIA 259 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~-~~l-~~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~ 259 (455)
.+|+++...+.+.+.+.+.=- .+. -..+.+..+-...++++++.+|+|+|||..+.
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 578888888777776654100 000 00011111111124789999999999997654
No 332
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.09 E-value=0.056 Score=47.78 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 333
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.08 E-value=0.066 Score=58.17 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=31.6
Q ss_pred CCCcccccCHHHHHHHHHH-HHHHHH-hHHHHhhhcCCCCceeEEECCCCCChHHHHH
Q 047029 204 STFDTLAMDPVLKQALIDD-LDRFVK-RREFYSRVGKAWKRGYLLYGPPGTGKSSLIA 259 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~-l~~~l~-~~~~~~~~g~~~~rg~LL~GPpGTGKTsla~ 259 (455)
.+|+++..++.+++.+.+. +..+.. ..+.+.. ++...+.+++.||+|+|||+.+.
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLLEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTTTTCCEEEECCTTSCHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-HhcCCCcEEEEcCCCCcHHHHHH
Confidence 4678887777666554331 000000 1111221 12336789999999999999873
No 334
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.039 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 335
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.06 E-value=0.01 Score=57.63 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=26.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC---CcEEEEeccccC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK---FDIYDMELASLR 278 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~~~~~~ 278 (455)
.-+.|.||+|+||||+++.+++.++ ..+..++...+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999999876 445556665554
No 336
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.06 E-value=0.038 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+++.||+|||||+|++.+|+..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4459999999999999999999875
No 337
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.099 Score=46.01 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceeEEECCCCCChHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~ 263 (455)
...+++.|++|+|||+|+.++.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999984
No 338
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.04 E-value=0.024 Score=49.27 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.00 E-value=0.026 Score=55.63 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.-+-|.||+|+||||+++.++..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3588899999999999999999885
No 340
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.033 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...++|.|++|+|||+|+.++.+.-
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3469999999999999999998753
No 341
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.00 E-value=0.016 Score=61.09 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=26.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+.-++|.|+||+||||+++.+|.++ +.+...++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 4568999999999999999999998 44444444
No 342
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.98 E-value=0.07 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+||||+++.+|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568999999999999999999753
No 343
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.98 E-value=0.034 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999753
No 344
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.97 E-value=0.075 Score=45.62 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999763
No 345
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.92 E-value=0.046 Score=50.49 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.2
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
-++|.|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 489999999999999999875
No 346
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.012 Score=52.24 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.....+++.|++|+|||+|+.++++.-
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334579999999999999999998753
No 347
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.91 E-value=0.028 Score=63.85 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.8
Q ss_pred CceeEEECCCCCChHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMA 262 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA 262 (455)
.+.++|.||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999994
No 348
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.91 E-value=0.019 Score=61.60 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=21.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.+-+++.||||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4579999999999999998887665
No 349
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.87 E-value=0.028 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..+++.|++|+|||+|+.++.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 350
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.87 E-value=0.086 Score=57.37 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.4
Q ss_pred CceeEEECCCCCChHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLI 258 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla 258 (455)
.+.+++.||+|+|||..+
T Consensus 39 ~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIA 56 (720)
T ss_dssp TCEEEEECCGGGCHHHHH
T ss_pred CCcEEEEcCCccHHHHHH
Confidence 578999999999999876
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.85 E-value=0.018 Score=56.41 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.-+.|.||+|+||||+++.+|..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 352
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.81 E-value=0.042 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.7
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
..+++.|++|+|||+|+.++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 353
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.044 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46999999999999999999873
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.80 E-value=0.017 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
-.+|+||.|+|||+++.||+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999999875
No 355
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.80 E-value=0.028 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 356
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.79 E-value=0.034 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=20.1
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 357
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.79 E-value=0.053 Score=50.44 Aligned_cols=52 Identities=10% Similarity=0.037 Sum_probs=29.6
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcC---CCCceeEEECCCCCChHHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGK---AWKRGYLLYGPPGTGKSSLI 258 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGTGKTsla 258 (455)
.+|+++...+.+.+.+.+. . +..+..++..-+ ...+.+++.+|+|+|||...
T Consensus 29 ~~f~~~~l~~~l~~~l~~~--g-~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQ--N-FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTT--T-CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--C-CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHH
Confidence 5788888777766655431 0 000111111100 01367999999999999763
No 358
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.78 E-value=0.02 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=10.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998754
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.78 E-value=0.028 Score=50.18 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=26.1
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+-+.+.|++|+||||++..++..+ |+.+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999986 45555444
No 360
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.02 Score=63.35 Aligned_cols=32 Identities=38% Similarity=0.424 Sum_probs=23.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc----CCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL----KFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~ 273 (455)
.-+++.||||||||+++..++..+ +..+..+.
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 357999999999999887776544 44554443
No 361
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.77 E-value=0.028 Score=65.70 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+-|.||+|+|||||++++.+.+
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Confidence 3447899999999999999999877
No 362
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.74 E-value=0.027 Score=57.86 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=30.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~ 274 (455)
|+++..-++|.|+||+|||+++..+|... +.++..+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56666679999999999999999998754 456766654
No 363
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.70 E-value=0.02 Score=56.27 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.-+-|.||+|+|||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34578899999999999999999874
No 364
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.69 E-value=0.021 Score=60.80 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=28.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC----CcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK----FDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~----~~v~~l~~ 274 (455)
..++|.|+||+||||++++++..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4588999999999999999999986 67777763
No 365
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.02 Score=53.43 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+-+.+.|++|+||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999994
No 366
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.66 E-value=0.2 Score=48.11 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=22.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIYD 271 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~~ 271 (455)
.+.+++.+|+|+|||..+...+-..+..++.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~~~~~li 61 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILELGMKSLV 61 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhcCCEEE
Confidence 3579999999999998766665555444433
No 367
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.66 E-value=0.018 Score=53.34 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=28.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEec
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMEL 274 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~ 274 (455)
.+-|+|..||||||+++.++. +|+++++.|.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 578999999999999999998 9999998775
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.65 E-value=0.062 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
..+++.|++|+|||+|+.++++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999997
No 369
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.036 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 370
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.63 E-value=0.03 Score=57.49 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEeccc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMELAS 276 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~~~ 276 (455)
.++.+++.|++|+||||++..+|..+ |..+..+++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45678999999999999999999876 66777666653
No 371
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.61 E-value=0.024 Score=56.11 Aligned_cols=63 Identities=16% Similarity=0.307 Sum_probs=40.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC--cEEEEeccc-c-----------C--ChHHHHHHHHh--hCCceEEEEeccc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF--DIYDMELAS-L-----------R--SNSDLRRLLVS--TGNRSILVIEDID 302 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~--~v~~l~~~~-~-----------~--~~~~l~~ll~~--~~~~~IL~iDEiD 302 (455)
...+++.||+|+||||+++++++.+.. ..+.++-.. + . .....+..+.. ..+|.+|++||..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 457999999999999999999998742 233333211 0 0 12223333332 2478999999976
Q ss_pred c
Q 047029 303 C 303 (455)
Q Consensus 303 ~ 303 (455)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 372
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.59 E-value=0.02 Score=53.01 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=25.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
.-+.|.||+|+||||+++.+++.+ +++++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 347788999999999999999988 45665443
No 373
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.53 E-value=0.018 Score=56.24 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.-+-|.||+|+||||+++.|++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 374
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.53 E-value=0.013 Score=55.21 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...-+.|.||+|+|||||++++++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999876
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.52 E-value=0.013 Score=55.07 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=23.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..-+.|.||.|+|||||++++++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p 57 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLDKP 57 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 445889999999999999999988743
No 376
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.50 E-value=0.028 Score=52.65 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=22.1
Q ss_pred eeEEECCCCCChHHHHHHHHHHc-------CCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL-------KFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l-------~~~v~~l 272 (455)
-+.|.||+|+||||+++.+++.+ |.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 47888999999999999999988 5666544
No 377
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.46 E-value=0.04 Score=48.17 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+++.|++|+|||+|+.++.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 378
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.46 E-value=0.019 Score=53.01 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..-+.|.||.|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999986
No 379
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.063 Score=48.19 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 380
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.45 E-value=0.048 Score=55.83 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=27.9
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
.++.+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 35568888999999999999999987 455655554
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.41 E-value=0.012 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998774
No 382
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.39 E-value=0.0097 Score=56.49 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=23.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc-CCcE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL-KFDI 269 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l-~~~v 269 (455)
.-+.|.|++|+||||+++.|++.+ +..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 458889999999999999999998 4333
No 383
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.39 E-value=0.051 Score=49.07 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...+++.|++|+|||+|+.++.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998743
No 384
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.39 E-value=0.021 Score=57.14 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
...++|.||+|+||||++++|++.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 55799999999999999999999874
No 385
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.36 E-value=0.046 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.+.+++.|++|+||||++.+++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999998863
No 386
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.35 E-value=0.023 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-.+++.|++|+|||+|+.++.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999874
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.34 E-value=0.018 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.0
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
++. .-+.|.||+|+|||||++++++.+.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344 5688999999999999999999874
No 388
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.33 E-value=0.024 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 389
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.32 E-value=0.022 Score=51.10 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+.|.||+|+|||||++++++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35889999999999999999986
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.32 E-value=0.068 Score=46.89 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 391
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.31 E-value=0.038 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.7
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|+.+..-++|.|+||+|||+++..+|..+ +.++..+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666679999999999999999998875 666666554
No 392
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.24 E-value=0.022 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-+.|.||+|+|||||++.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.20 E-value=0.017 Score=55.23 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..-+.|.||.|+|||||++++++.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 345889999999999999999998753
No 394
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.18 E-value=0.015 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+..++|.|.||+||||+++.+|+.++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999999874
No 395
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.18 E-value=0.023 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred eeEEECCCCCChHHHHHHHHHHcC
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~ 266 (455)
.+.|.||+|+|||||+++|++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999999873
No 396
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.18 E-value=0.021 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
..-+.|.||+|+|||||++.|++.+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999998654
No 397
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.17 E-value=0.016 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=22.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+|||||++++++.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4458899999999999999999876
No 398
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.12 E-value=0.016 Score=54.16 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 44588999999999999999999873
No 399
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.11 E-value=0.052 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.7
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
.-+++.|++|+|||+|+.++.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999974
No 400
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.09 E-value=0.016 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999999874
No 401
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.06 E-value=0.1 Score=51.93 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.-+.|.|+||+|||||+.++++.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999865
No 402
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.04 E-value=0.11 Score=46.23 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.-.+++.|++|+|||+|++.+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3469999999999999999887743
No 403
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.04 E-value=0.019 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..-+.|.||.|+|||||++++++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 445889999999999999999998743
No 404
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.04 E-value=0.038 Score=51.27 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=25.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.-+.|.||+|+||||+++.+++.++.++.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 45788899999999999999999986443
No 405
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.04 E-value=0.073 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
--+++.|++|+|||+|+..+++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999963
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.03 E-value=0.019 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.9
Q ss_pred CCceeEEECCCCCChHHHHHHHHHHc
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...-+.|.||.|+|||||+++|++.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34568999999999999999999876
No 407
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.02 E-value=0.017 Score=55.03 Aligned_cols=26 Identities=42% Similarity=0.744 Sum_probs=22.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999998763
No 408
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.00 E-value=0.019 Score=55.15 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.9
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||+|+|||||++.|++.+.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44588999999999999999998873
No 409
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.97 E-value=0.026 Score=54.05 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..-+.|.||.|+|||||++.|++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 445889999999999999999996
No 410
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.91 E-value=0.044 Score=56.41 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=30.4
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
|+.+..-+++.|+||+|||+++..+|... |.++..+.+
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666669999999999999999998765 566766654
No 411
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.91 E-value=0.018 Score=54.50 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||+|+|||||++.|++.+.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44588999999999999999998873
No 412
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.88 E-value=0.024 Score=53.66 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..-+.|.||.|+|||||++++++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999996
No 413
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.86 E-value=0.019 Score=54.48 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=23.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFD 268 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~ 268 (455)
..-+.|.||.|+|||||++.+++.+...
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3458899999999999999999987543
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.85 E-value=0.023 Score=56.98 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3348899999999999999999977
No 415
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.84 E-value=0.34 Score=44.19 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.2
Q ss_pred CceeEEECCCCCChHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLI 258 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla 258 (455)
.+.+++.+|+|+|||...
T Consensus 57 ~~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 457999999999999743
No 416
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.82 E-value=0.088 Score=51.09 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=27.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEecc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELA 275 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~ 275 (455)
++.+.+.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4567888999999999999999887 5566655543
No 417
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.81 E-value=0.02 Score=53.98 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..-+.|.||.|+|||||++.+++.+..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345889999999999999999998743
No 418
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.80 E-value=0.02 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+|||||++++++.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 419
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.79 E-value=0.023 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||+++|++.+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999998763
No 420
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.79 E-value=0.043 Score=57.55 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=23.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
..+.|.|++||||||+++++|+.|+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999985
No 421
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.77 E-value=0.035 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 422
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=93.77 E-value=0.41 Score=47.42 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=30.0
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcC---CCCceeEEECCCCCChHHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGK---AWKRGYLLYGPPGTGKSSLI 258 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~---~~~rg~LL~GPpGTGKTsla 258 (455)
.+|+++...+.+.+.+.+.= +..+..++...+ ...+.+++.+|+|+|||..+
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 94 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHH
Confidence 57888888877766654310 001111111110 11456999999999999764
No 423
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.71 E-value=0.033 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+.|.|++|+|||+|+.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999863
No 424
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.70 E-value=0.023 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+|||||+++|++.+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4458899999999999999999876
No 425
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.68 E-value=0.03 Score=56.12 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999976
No 426
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.67 E-value=0.037 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...+++.|++|+|||+|+.++.+.-
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999998743
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.67 E-value=0.033 Score=47.81 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 428
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.66 E-value=0.033 Score=48.36 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++||.|+|||+++.||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998765
No 429
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.65 E-value=0.038 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+.-+.|.||+|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999988
No 430
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.63 E-value=0.031 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||.++||+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3457899999999999999999876
No 431
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.63 E-value=0.057 Score=53.73 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=26.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
..-+.|.|+||+||||++.+++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3468999999999999999999886 55554444
No 432
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.63 E-value=0.022 Score=54.16 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999999863
No 433
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.62 E-value=0.022 Score=54.96 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=22.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+.|.||.|+|||||++++++.+.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998773
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.61 E-value=0.03 Score=56.59 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+-|.||+|||||||+++||+.+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3358899999999999999999977
No 435
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.60 E-value=0.061 Score=54.88 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-+.|.||+|+|||||++++++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999854
No 436
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.59 E-value=0.032 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 437
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.57 E-value=0.025 Score=59.89 Aligned_cols=26 Identities=35% Similarity=0.407 Sum_probs=23.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
...+.|.||+|+||||++++||+.++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34588999999999999999999985
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.57 E-value=0.031 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=19.5
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
-++|.|++|+|||+|+..+++
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999986
No 439
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.56 E-value=0.45 Score=44.53 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=36.0
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc---CCcEEEEeccc--cCChHHH----------------HHHHHhhCCceEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMELAS--LRSNSDL----------------RRLLVSTGNRSILVIED 300 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~~~--~~~~~~l----------------~~ll~~~~~~~IL~iDE 300 (455)
.-+++|||.|+|||+.+-.++..+ |..++.+...- -.+ ..+ .+++.....-.+|+|||
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViIDE 98 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEALGVAVIGIDE 98 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEEESS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEEc
Confidence 347889999999997666665544 55555544211 001 111 11222334567999999
Q ss_pred ccch
Q 047029 301 IDCS 304 (455)
Q Consensus 301 iD~l 304 (455)
+..+
T Consensus 99 aQF~ 102 (234)
T 2orv_A 99 GQFF 102 (234)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9875
No 440
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.56 E-value=0.022 Score=54.57 Aligned_cols=26 Identities=35% Similarity=0.645 Sum_probs=22.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcC
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
..-+-|.||.|+|||||++++++.+.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34588999999999999999999773
No 441
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.55 E-value=0.029 Score=56.12 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||..+
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 442
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.48 E-value=0.034 Score=58.41 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.2
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
|++...-++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55666679999999999999999999876
No 443
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.48 E-value=0.045 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999763
No 444
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.44 E-value=0.12 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+.|.|+||+|||||+.++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 35899999999999999999873
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.42 E-value=0.021 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
+.+.|.||+|+|||||++.|++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999874
No 446
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.41 E-value=0.046 Score=57.02 Aligned_cols=38 Identities=13% Similarity=-0.027 Sum_probs=29.6
Q ss_pred cCCCCceeEEECCCCCChHHHHHHHHHHc----CCcEEEEec
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAAMANYL----KFDIYDMEL 274 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~alA~~l----~~~v~~l~~ 274 (455)
|+++..-++|.|+||+|||+++..+|... |.++..+++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45555569999999999999999998765 456666654
No 447
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.40 E-value=0.06 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=25.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.-+.|.||+|+|||||++.|++.+..+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 35899999999999999999999876543
No 448
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.38 E-value=0.036 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.8
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+.|.|++|+|||+|+.++++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 449
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.37 E-value=0.098 Score=49.56 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.1
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+.|.|+||+|||||+.++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999875
No 450
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.35 E-value=0.033 Score=56.12 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||.++||+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 451
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.34 E-value=0.036 Score=58.23 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.3
Q ss_pred cCCCCceeEEECCCCCChHHHHHH--HHHHc
Q 047029 237 GKAWKRGYLLYGPPGTGKSSLIAA--MANYL 265 (455)
Q Consensus 237 g~~~~rg~LL~GPpGTGKTsla~a--lA~~l 265 (455)
+++...-++|.||+|+|||||++. ++..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345566799999999999999999 45544
No 452
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.31 E-value=0.046 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999754
No 453
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.26 E-value=0.043 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
.-+.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347888999999999999999988
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.25 E-value=0.052 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.5
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcCC
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLKF 267 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~~ 267 (455)
.-+.|.|++|+||||+++.+++.++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34778899999999999999998754
No 455
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.18 E-value=0.026 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.3
Q ss_pred CceeEEECCCCCChHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~ 263 (455)
.-.+++.|++|+|||+|+.++.+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999884
No 456
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.16 E-value=0.032 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+|||||++++++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 457
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.13 E-value=0.028 Score=56.10 Aligned_cols=25 Identities=24% Similarity=0.638 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3458899999999999999999876
No 458
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.12 E-value=0.35 Score=52.22 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=40.3
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEEeccccCChHHHHHHH-------------HhhCCceEEEEecccch
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDMELASLRSNSDLRRLL-------------VSTGNRSILVIEDIDCS 304 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l~~~~~~~~~~l~~ll-------------~~~~~~~IL~iDEiD~l 304 (455)
..+|.|++|+|||+++..++..+...++ +......+-..+.+.. .......+|+|||+-++
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~~~-vtAP~~~a~~~l~~~~~~~i~~~~Pd~~~~~~~~~dlliVDEAAaI 267 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGRAI-VTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAI 267 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSCEE-EECSSCCSCHHHHHHHGGGCCBCCHHHHHHSCCCCSEEEEETGGGS
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCcE-EECCCHHHHHHHHHHhhCCeEEeCchhhhhCcccCCEEEEEchhcC
Confidence 4699999999999999999998865543 3333322223333221 22234579999999876
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.12 E-value=0.03 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.3
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||.|+|||||+++|++.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.11 E-value=0.082 Score=54.33 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=24.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDI 269 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v 269 (455)
..-+.|.||+|||||||++.||+....+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~ 185 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTRADV 185 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 33588999999999999999999986554
No 461
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.10 E-value=0.17 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.8
Q ss_pred eeEEECCCCCChHHHHHHHHHHc
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l 265 (455)
-.++.||||||||+|+..||+..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999864
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.08 E-value=0.11 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+++.|++|+|||+|+..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568888999999999999999886
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.08 E-value=0.058 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.0
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||||+|||||++++++.+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999876
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.07 E-value=0.05 Score=49.48 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.0
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
-.+++.|++|+|||+|+.++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999975
No 465
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.02 E-value=0.047 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-.+++.|++|+|||+|+.++.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.96 E-value=0.095 Score=52.60 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=27.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc---CCcEEEEec
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL---KFDIYDMEL 274 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l---~~~v~~l~~ 274 (455)
..++++.||+|+|||++++.++..+ +..++.+|.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5579999999999999999998765 556666654
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.95 E-value=0.088 Score=49.21 Aligned_cols=33 Identities=24% Similarity=0.530 Sum_probs=26.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc--CCcEEEEec
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL--KFDIYDMEL 274 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l--~~~v~~l~~ 274 (455)
..+++.|.+|+||||++..+|..+ |..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 457888999999999999999877 556655553
No 468
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.93 E-value=0.054 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred CCceeEEECCCCCChHHHHHHHHH
Q 047029 240 WKRGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 240 ~~rg~LL~GPpGTGKTsla~alA~ 263 (455)
.+..+++.|++|+|||+|+.++.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999998873
No 469
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.049 Score=56.36 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCCceeEEECCCCCChHHHHHHHHHHc
Q 047029 238 KAWKRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 238 ~~~~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
+....-+.|.||.|+|||||++.|++.+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3344559999999999999999999976
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.89 E-value=0.089 Score=48.23 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=24.5
Q ss_pred eEEECCCCCChHHHHHHHHHHc--CCcEEEE
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL--KFDIYDM 272 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l--~~~v~~l 272 (455)
+.|.|+.|+||||+++.+++.| |.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 6788999999999999999998 5565544
No 471
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.88 E-value=0.057 Score=47.09 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.4
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+.++.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 472
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.88 E-value=0.052 Score=47.03 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=19.9
Q ss_pred ceeEEECCCCCChHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~ 263 (455)
-.+++.|++|+|||+|+.++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 473
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.86 E-value=0.043 Score=55.56 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4468999999999999999999865
No 474
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.84 E-value=0.044 Score=48.10 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.6
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-+.|.|+||+|||||+.++++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 475
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.82 E-value=0.067 Score=52.51 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=24.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.+|++|.|++|+|||+++.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 579999999999999999999875 54443
No 476
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.75 E-value=0.082 Score=55.90 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.2
Q ss_pred ceeEEECCCCCChHHHHHHHHHHcC---CcEEEEe
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYLK---FDIYDME 273 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l~---~~v~~l~ 273 (455)
.-++|.|+||+||||+++.++..++ .+++.++
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4588999999999999999999874 4555554
No 477
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.70 E-value=0.5 Score=46.73 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.9
Q ss_pred eeEEECCCCCChHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMAN 263 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~ 263 (455)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 688999999999999999998
No 478
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.69 E-value=0.057 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.6
Q ss_pred ceeEEECCCCCChHHHHHH-HHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAA-MANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~a-lA~~ 264 (455)
-.+++.|++|+|||+|+.+ +.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 3699999999999999999 5444
No 479
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.68 E-value=0.03 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=20.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.|++|+|||||++++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458999999999999999987543
No 480
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.67 E-value=0.028 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=22.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+.|.||+|||||||+++||+.+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3458899999999999999999876
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.65 E-value=0.05 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
..+.|.|+||+|||||+.++.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999875
No 482
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.62 E-value=0.055 Score=47.62 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999865
No 483
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.62 E-value=0.065 Score=46.64 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.1
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
.-.+++.|++|+|||+|+.++.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999864
No 484
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.58 E-value=0.043 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.8
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+++.|++|+|||+|+.++.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 485
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.58 E-value=0.066 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
.+++.|++|+|||+|+..+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5999999999999999999864
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.56 E-value=0.11 Score=47.20 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.2
Q ss_pred eEEECCCCCChHHHHHHHHHHc---CCcEEEEe
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL---KFDIYDME 273 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l---~~~v~~l~ 273 (455)
+.|.|+.|+||||.++.+++.| |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678999999999999999988 66776554
No 487
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.56 E-value=0.066 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.7
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
...+++.|++|+|||+|+.++.+.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998753
No 488
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.54 E-value=0.051 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.7
Q ss_pred ceeEEECCCCCChHHHHHHHHHH
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~ 264 (455)
-.+++.|++|+|||+|+..+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
No 489
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.52 E-value=0.069 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.9
Q ss_pred eeEEECCCCCChHHHHHHHHHH
Q 047029 243 GYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~ 264 (455)
-++|.|++|+|||+|+..+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999888764
No 490
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.51 E-value=0.051 Score=53.28 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=23.8
Q ss_pred CceeEEECCCCCChHHHHHHHHHHcCCcEE
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYLKFDIY 270 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l~~~v~ 270 (455)
.+|+||.||+|+|||++|.++.. -|..++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 57999999999999999998765 455444
No 491
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.51 E-value=0.052 Score=47.69 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
...+++.|++|+|||+|+.++.+.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999853
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.40 E-value=0.07 Score=49.46 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=23.5
Q ss_pred eeEEECCCCCChHHHHHHHHHHcCCcEEEE
Q 047029 243 GYLLYGPPGTGKSSLIAAMANYLKFDIYDM 272 (455)
Q Consensus 243 g~LL~GPpGTGKTsla~alA~~l~~~v~~l 272 (455)
-+.|.||.|+||||+++.+++. +..+...
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4788899999999999999988 5445443
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.35 E-value=0.031 Score=54.69 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.0
Q ss_pred CCCceeEEECCCCCChHHHHHHHHHHcC
Q 047029 239 AWKRGYLLYGPPGTGKSSLIAAMANYLK 266 (455)
Q Consensus 239 ~~~rg~LL~GPpGTGKTsla~alA~~l~ 266 (455)
++..-+.|.||+|+|||||++.|++.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3455689999999999999999999873
No 494
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.32 E-value=0.073 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.3
Q ss_pred ceeEEECCCCCChHHHHHHHHHHc
Q 047029 242 RGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 242 rg~LL~GPpGTGKTsla~alA~~l 265 (455)
-.+++.|++|+|||+|+.++.+.-
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 495
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.25 E-value=0.072 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.1
Q ss_pred eEEECCCCCChHHHHHHHHHHc
Q 047029 244 YLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 244 ~LL~GPpGTGKTsla~alA~~l 265 (455)
+.|.||+|+|||||+++|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 7899999999999999999863
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.25 E-value=0.066 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred CceeEEECCCCCChHHHHHHHHHHc
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANYL 265 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~l 265 (455)
..-+-|.||+|+|||||+++|+..+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3458899999999999999999876
No 497
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.24 E-value=0.19 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.5
Q ss_pred Cce-eEEECCCCCChHHHHHHHHHH
Q 047029 241 KRG-YLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg-~LL~GPpGTGKTsla~alA~~ 264 (455)
+.| +.+.|+||+|||||+.++.+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344 788999999999999999864
No 498
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.24 E-value=0.21 Score=48.39 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred CceeEEECCCCCChHHHHHHHHHH
Q 047029 241 KRGYLLYGPPGTGKSSLIAAMANY 264 (455)
Q Consensus 241 ~rg~LL~GPpGTGKTsla~alA~~ 264 (455)
+.-++|.|+||+|||+|+.++.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999997654
No 499
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.15 E-value=0.52 Score=47.80 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=30.1
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhHHHHhhhcCC---CCceeEEECCCCCChHHH
Q 047029 204 STFDTLAMDPVLKQALIDDLDRFVKRREFYSRVGKA---WKRGYLLYGPPGTGKSSL 257 (455)
Q Consensus 204 ~tfd~l~g~~~~k~~l~~~l~~~l~~~~~~~~~g~~---~~rg~LL~GPpGTGKTsl 257 (455)
.+|+++...+.+.+.+.+. . +..+..++...++ ..+.+++.+|+|+|||..
T Consensus 56 ~~f~~~~l~~~l~~~l~~~--g-~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKS--G-YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHT--T-CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred CChhhcCCCHHHHHHHHHc--C-CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH
Confidence 4799988877776665431 0 0111111111111 246899999999999973
No 500
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.11 E-value=0.29 Score=50.91 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=40.0
Q ss_pred eeEEECCCCCChHHH-HHHHHHHcCCcEEEEeccccCChHHHHHHHHhhC-----CceEEEEecccc
Q 047029 243 GYLLYGPPGTGKSSL-IAAMANYLKFDIYDMELASLRSNSDLRRLLVSTG-----NRSILVIEDIDC 303 (455)
Q Consensus 243 g~LL~GPpGTGKTsl-a~alA~~l~~~v~~l~~~~~~~~~~l~~ll~~~~-----~~~IL~iDEiD~ 303 (455)
-.++.|++|||||+| +..|++..+.+++.+-+.--+..+++.++..... .++++|.--.|.
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~ 231 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADS 231 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTS
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCC
Confidence 389999999999999 6799999887755443332234455555544332 356666665554
Done!