BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047033
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FGC|A Chain A, Crystal Structure Of Acetolactate Synthase- Small Subunit
From Thermotoga Maritima
Length = 193
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
Query: 339 TSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES 398
T +R H +S LV++ PGV V +FARRG+NI S+ VG +ET GLSR+ V D++
Sbjct: 24 TDQIREHLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKT 83
Query: 399 ISKLMQQLYKLIDLHEVRDLTHLP--FAERELMLIKVAVNTTARRDVLDIATIFRAKAVD 456
I ++ +Q YKL+++ +V + LP ERE LIKV + ++++ + IFR K +D
Sbjct: 84 IEQIEKQAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDED-KQEIFQLVEIFRGKIID 142
Query: 457 VSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
VS +E+TG K+ A LL + E+ARTG VA R
Sbjct: 143 VSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 93/168 (55%), Gaps = 17/168 (10%)
Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVME 158
H +S V ++ G+ ++A +FARRG+NI S+ VG ++ L I V G DK ++Q+ +
Sbjct: 30 HLVSXLVHNKPGVXRKVANLFARRGFNISSITVGESETPGLSRLVIXVKGDDKTIEQIEK 89
Query: 159 QLQKLVNVLKVEDLSNEPQ--VERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIF 216
Q KLV V+KV + P+ VERE LIKV D + EIF LV+IF
Sbjct: 90 QAYKLVEVVKVTPIDPLPENRVEREXALIKVRFDED-KQEIF------------QLVEIF 136
Query: 217 RAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
R KI+D+S IE+TG K+ A L + + EIARTG +A R
Sbjct: 137 RGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAXNR 184
>pdb|2PC6|A Chain A, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|B Chain B, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|C Chain C, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
pdb|2PC6|D Chain D, Crystal Structure Of Putative Acetolactate Synthase- Small
Subunit From Nitrosomonas Europaea
Length = 165
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 14/166 (8%)
Query: 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVME 158
H IS+ +E+G ++R+AG+F+ RGYNIESL+V +D L T+V G D++++Q+ +
Sbjct: 5 HIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVEQITK 64
Query: 159 QLQKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA 218
QL KL+ V+K+ DLS+E VEREL L+KV A K R E + L DIFR
Sbjct: 65 QLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREE------------XKRLADIFRG 112
Query: 219 KIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264
I+D++ TIE+TG K+ + + I EIARTG L R
Sbjct: 113 NIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%)
Query: 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESIS 400
G H +S+L + G L+ V G+F+ RGYNI+SL+V E LSR T V DE +
Sbjct: 1 GHXRHIISLLXENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRXTLVTNGPDEIVE 60
Query: 401 KLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDH 460
++ +QL KLI++ ++ DL+ + EREL L+KV R + +A IFR +DV++
Sbjct: 61 QITKQLNKLIEVVKLIDLSSEGYVERELXLVKVRAVGKDREEXKRLADIFRGNIIDVTNE 120
Query: 461 TITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498
T+ELTG K+ + ++ I E+ARTG L R
Sbjct: 121 LYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSR 158
>pdb|2F1F|A Chain A, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
pdb|2F1F|B Chain B, Crystal Structure Of The Regulatory Subunit Of
Acetohydroxyacid Synthase Isozyme Iii From E. Coli
Length = 164
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 101/167 (60%), Gaps = 19/167 (11%)
Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQL 160
+SV + +ESG ++R+ G+F++RGYNIESL V D L TI G +KVL+Q+ +QL
Sbjct: 6 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKI 220
KLV+VL+V +L VERE+ML+K+ A R E ++ +IFR +I
Sbjct: 66 HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDE------------VKRNTEIFRGQI 113
Query: 221 VDISEYSLTIEVTGDPGKM---VAVQRNLSKFGIREIARTGKIALRR 264
+D++ T+++ G GK+ +A R+++K I E+AR+G + L R
Sbjct: 114 IDVTPSLYTVQLAGTSGKLDAFLASIRDVAK--IVEVARSGVVGLSR 158
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406
LS+L+ + G L+ V G+F++RGYNI+SL V + LSR+T ++ + ++ +QL
Sbjct: 6 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQL 65
Query: 407 YKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLEL 466
+KL+D+ V +L ERE+ML+K+ + R +V IFR + +DV+ T++L
Sbjct: 66 HKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQL 125
Query: 467 TGDLDKMVA-LQRLLEPYGICEVARTGRVALVR 498
G K+ A L + + I EVAR+G V L R
Sbjct: 126 AGTSGKLDAFLASIRDVAKIVEVARSGVVGLSR 158
>pdb|2KO1|A Chain A, Solution Nmr Structure Of The Act Domain From Gtp
Pyrophosphokinase Of Chlorobium Tepidum. Northeast
Structural Genomics Consortium Target Ctr148a
pdb|2KO1|B Chain B, Solution Nmr Structure Of The Act Domain From Gtp
Pyrophosphokinase Of Chlorobium Tepidum. Northeast
Structural Genomics Consortium Target Ctr148a
Length = 88
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFT----IVVYGTDKVLQQVMEQLQKLV 164
D++GM N+I GV ++ NI ++ LN +FT I V TDK L +M++L+K+
Sbjct: 14 DKNGMTNQITGVISKFDTNIRTIV--LNAKDGIFTCNLMIFVKNTDK-LTTLMDKLRKVQ 70
Query: 165 NVLKVEDLSN 174
V VE LSN
Sbjct: 71 GVFTVERLSN 80
>pdb|3SJK|A Chain A, Crystal Structure Of The C147a Mutant 3c From Enterovirus
71
Length = 190
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KLVNVL +L +E V EL LI ++ + KFR
Sbjct: 52 HKLVNVLDAVELVDEQGVNLELTLITLDTNEKFR 85
>pdb|3SJO|A Chain A, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|B Chain B, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|C Chain C, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|D Chain D, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|E Chain E, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|F Chain F, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|G Chain G, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
pdb|3SJO|H Chain H, Structure Of Ev71 3c In Complex With Rupintrivir (Ag7088)
Length = 190
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KLVNVL +L +E V EL LI ++ + KFR
Sbjct: 52 HKLVNVLDAVELVDEQGVNLELTLITLDTNEKFR 85
>pdb|3R0F|A Chain A, Human Enterovirus 71 3c Protease Mutant H133g In Complex
With Rupintrivir
pdb|3R0F|B Chain B, Human Enterovirus 71 3c Protease Mutant H133g In Complex
With Rupintrivir
Length = 187
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KLVNVL +L +E V EL LI ++ + KFR
Sbjct: 55 HKLVNVLDAVELVDEQGVNLELTLITLDTNEKFR 88
>pdb|3OSY|A Chain A, Human Enterovirus 71 3c Protease
pdb|3OSY|B Chain B, Human Enterovirus 71 3c Protease
pdb|3OSY|C Chain C, Human Enterovirus 71 3c Protease
pdb|3OSY|D Chain D, Human Enterovirus 71 3c Protease
pdb|3OSY|E Chain E, Human Enterovirus 71 3c Protease
Length = 204
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KLVNVL +L +E V EL LI ++ + KFR
Sbjct: 72 HKLVNVLDAVELVDEQGVNLELTLITLDTNEKFR 105
>pdb|2F06|A Chain A, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
pdb|2F06|B Chain B, Crystal Structure Of Protein Bt0572 From Bacteroides
Thetaiotaomicron
Length = 144
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162
+S+F+ ++SG + + V A+ N+ +L + N D + +V DK + + +
Sbjct: 9 LSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN-HF 67
Query: 163 LVNVLKVEDLS 173
VN+ V +S
Sbjct: 68 AVNITDVVGIS 78
>pdb|3SJ9|A Chain A, Crystal Structure Of The C147a Mutant 3c Of Cva16 In
Complex With Faglrqavtq Peptide
Length = 190
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KL+NVL +L +E V EL L+ ++ + KFR
Sbjct: 52 HKLINVLDAVELVDEQGVNLELTLVTLDTNEKFR 85
>pdb|3SJ8|A Chain A, Crystal Structure Of The 3c Protease From Coxsackievirus
A16
pdb|3SJI|A Chain A, Crystal Structure Of Cva16 3c In Complex With Rupintrivir
(Ag7088)
Length = 190
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KL+NVL +L +E V EL L+ ++ + KFR
Sbjct: 52 HKLINVLDAVELVDEQGVNLELTLVTLDTNEKFR 85
>pdb|3QZQ|A Chain A, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|B Chain B, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|C Chain C, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
pdb|3QZQ|D Chain D, Human Enterovirus 71 3c Protease Mutant E71d In Complex
With Rupintrivir
Length = 187
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 161 QKLVNVLKVEDLSNEPQVERELMLIKVNADPKFR 194
KLVNVL +L +E V +L LI ++ + KFR
Sbjct: 55 HKLVNVLDAVELVDEQGVNLDLTLITLDTNEKFR 88
>pdb|3V4G|A Chain A, 1.60 Angstrom Resolution Crystal Structure Of An Arginine
Repressor From Vibrio Vulnificus Cmcp6
Length = 180
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 36/92 (39%)
Query: 162 KLVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIV 221
++V LK E N Q + ML K A A++ + CL L + + R ++
Sbjct: 52 EIVEALKQEGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLPTELGVPTVSSSLRELVL 111
Query: 222 DISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE 253
D+ + + PG + R L G E
Sbjct: 112 DVDHNQALVVIHTGPGAAQLIARMLDSLGKSE 143
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148
T+S+ D S + + G + RG +I LA G +D+ +T+++YG
Sbjct: 350 TLSLVTADHSHVFS--FGGYPLRGSSIFGLAPGKARDRKAYTVLLYG 394
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148
T+S+ D S + + G + RG +I LA G +D+ +T+++YG
Sbjct: 350 TLSLVTADHSHVFS--FGGYPLRGSSIFGLAPGKARDRKAYTVLLYG 394
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 323 VNQVLDPHWGV----LNDDDTSGLRSHTLSMLVNDSPG 356
+N VLDPH+GV L D + G H L + PG
Sbjct: 64 INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG 101
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148
T+S+ D S + + G + RG +I LA G +D+ +T+++YG
Sbjct: 350 TLSLVTADHSHVFS--FGGYPLRGSSIFGLAPGKARDRKAYTVLLYG 394
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 323 VNQVLDPHWGV----LNDDDTSGLRSHTLSMLVNDSPG 356
+N VLDPH+GV L D + G H L + PG
Sbjct: 64 INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG 101
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 323 VNQVLDPHWGV----LNDDDTSGLRSHTLSMLVNDSPG 356
+N VLDPH+GV L D + G H L + PG
Sbjct: 64 INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,922,469
Number of Sequences: 62578
Number of extensions: 489495
Number of successful extensions: 1534
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 28
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)