Query 047033
Match_columns 514
No_of_seqs 334 out of 2213
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2663 Acetolactate synthase, 100.0 1.7E-59 3.7E-64 459.6 2.3 290 31-394 10-309 (309)
2 PRK11895 ilvH acetolactate syn 100.0 1.6E-53 3.4E-58 397.0 21.9 159 343-501 1-159 (161)
3 CHL00100 ilvH acetohydroxyacid 100.0 7E-54 1.5E-58 403.7 18.9 169 343-511 1-169 (174)
4 TIGR00119 acolac_sm acetolacta 100.0 7.6E-53 1.6E-57 390.9 21.5 157 344-500 1-157 (157)
5 COG0440 IlvH Acetolactate synt 100.0 3.1E-53 6.6E-58 394.5 18.0 160 342-501 2-161 (163)
6 PRK11895 ilvH acetolactate syn 100.0 3.8E-50 8.1E-55 374.3 19.5 157 99-267 1-159 (161)
7 TIGR00119 acolac_sm acetolacta 100.0 9.2E-50 2E-54 370.3 18.6 155 100-266 1-157 (157)
8 COG0440 IlvH Acetolactate synt 100.0 4.6E-50 1E-54 373.3 15.6 159 98-268 2-162 (163)
9 CHL00100 ilvH acetohydroxyacid 100.0 8.4E-50 1.8E-54 376.0 16.3 168 99-278 1-170 (174)
10 KOG2663 Acetolactate synthase, 100.0 1.5E-35 3.3E-40 291.2 3.5 161 341-501 74-283 (309)
11 PRK13562 acetolactate synthase 100.0 9.2E-32 2E-36 227.3 10.4 80 343-422 1-83 (84)
12 PRK08178 acetolactate synthase 100.0 8.9E-32 1.9E-36 232.4 10.4 89 340-429 4-92 (96)
13 PRK06737 acetolactate synthase 100.0 2.7E-30 5.8E-35 214.9 10.7 76 343-418 1-76 (76)
14 PRK08178 acetolactate synthase 100.0 1.1E-28 2.3E-33 213.3 10.3 86 97-183 5-92 (96)
15 PRK11152 ilvM acetolactate syn 100.0 2.4E-28 5.2E-33 203.1 10.5 75 342-417 1-75 (76)
16 PRK13562 acetolactate synthase 100.0 2.5E-28 5.4E-33 206.5 9.6 77 99-175 1-82 (84)
17 PRK06737 acetolactate synthase 99.9 5.6E-27 1.2E-31 195.0 10.1 74 99-172 1-76 (76)
18 PF10369 ALS_ss_C: Small subun 99.9 1.9E-25 4E-30 184.6 9.4 75 425-499 1-75 (75)
19 PRK11152 ilvM acetolactate syn 99.9 4.1E-25 8.8E-30 183.8 9.9 73 98-171 1-75 (76)
20 PF10369 ALS_ss_C: Small subun 99.9 1.7E-24 3.6E-29 178.9 6.9 75 179-265 1-75 (75)
21 PF13710 ACT_5: ACT domain; PD 99.9 8.8E-23 1.9E-27 163.3 8.5 63 353-415 1-63 (63)
22 PF13710 ACT_5: ACT domain; PD 99.8 2.1E-20 4.6E-25 149.6 8.0 61 109-169 1-63 (63)
23 COG3978 Acetolactate synthase 99.0 1.2E-09 2.5E-14 92.5 7.3 76 342-418 1-76 (86)
24 cd04878 ACT_AHAS N-terminal AC 98.8 4E-08 8.7E-13 75.7 9.8 71 345-415 1-71 (72)
25 PF01842 ACT: ACT domain; Int 98.8 1.8E-08 4E-13 77.5 7.6 66 345-411 1-66 (66)
26 PF01842 ACT: ACT domain; Int 98.7 5.7E-08 1.2E-12 74.8 8.2 65 101-165 1-66 (66)
27 COG3978 Acetolactate synthase 98.7 6.9E-08 1.5E-12 81.9 7.2 75 98-173 1-77 (86)
28 PF13291 ACT_4: ACT domain; PD 98.6 4.7E-07 1E-11 73.9 11.0 73 344-416 6-79 (80)
29 cd04879 ACT_3PGDH-like ACT_3PG 98.6 1.9E-07 4.2E-12 71.5 8.0 71 346-418 1-71 (71)
30 PRK06349 homoserine dehydrogen 98.6 1.3E-07 2.9E-12 100.2 8.9 73 342-415 346-419 (426)
31 cd04878 ACT_AHAS N-terminal AC 98.6 5.1E-07 1.1E-11 69.5 9.0 69 101-169 1-71 (72)
32 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 4.8E-07 1E-11 70.9 7.9 71 345-415 1-72 (79)
33 cd04903 ACT_LSD C-terminal ACT 98.5 6.3E-07 1.4E-11 69.0 7.8 71 346-418 1-71 (71)
34 cd04908 ACT_Bt0572_1 N-termina 98.4 1.2E-06 2.6E-11 69.4 8.4 46 101-146 2-47 (66)
35 PRK06349 homoserine dehydrogen 98.4 8.4E-07 1.8E-11 94.2 9.1 74 96-169 344-419 (426)
36 cd04908 ACT_Bt0572_1 N-termina 98.4 1.7E-06 3.6E-11 68.6 8.3 45 345-389 2-46 (66)
37 PF13291 ACT_4: ACT domain; PD 98.4 4.5E-06 9.7E-11 68.2 10.5 72 99-170 5-79 (80)
38 PRK08577 hypothetical protein; 98.3 4.6E-06 9.9E-11 75.6 10.7 76 343-418 55-132 (136)
39 cd04879 ACT_3PGDH-like ACT_3PG 98.3 2.5E-06 5.5E-11 65.3 7.5 68 103-172 2-71 (71)
40 cd04874 ACT_Af1403 N-terminal 98.3 7E-06 1.5E-10 63.5 9.4 70 346-417 2-71 (72)
41 cd04888 ACT_PheB-BS C-terminal 98.3 8.5E-06 1.8E-10 64.9 10.0 72 346-418 2-75 (76)
42 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.3 4E-06 8.6E-11 65.6 7.6 70 101-170 1-73 (79)
43 cd04903 ACT_LSD C-terminal ACT 98.2 4.1E-06 8.9E-11 64.4 6.9 69 102-172 1-71 (71)
44 cd04901 ACT_3PGDH C-terminal A 98.2 2.7E-06 5.9E-11 66.6 5.8 68 347-418 2-69 (69)
45 cd04902 ACT_3PGDH-xct C-termin 98.2 5.5E-06 1.2E-10 65.3 6.8 71 347-419 2-72 (73)
46 cd04901 ACT_3PGDH C-terminal A 98.1 2.9E-06 6.2E-11 66.5 4.6 68 103-172 2-69 (69)
47 cd04887 ACT_MalLac-Enz ACT_Mal 98.1 2E-05 4.2E-10 62.8 9.0 68 346-414 1-69 (74)
48 cd04874 ACT_Af1403 N-terminal 98.1 2.1E-05 4.6E-10 60.8 8.6 69 102-171 2-71 (72)
49 cd04877 ACT_TyrR N-terminal AC 98.1 2.7E-05 5.8E-10 63.2 9.5 70 346-419 2-71 (74)
50 cd04888 ACT_PheB-BS C-terminal 98.1 2.2E-05 4.8E-10 62.5 8.5 71 102-172 2-75 (76)
51 PRK08577 hypothetical protein; 98.1 2.9E-05 6.3E-10 70.4 10.1 74 99-172 55-132 (136)
52 cd04876 ACT_RelA-SpoT ACT dom 98.1 4.5E-05 9.7E-10 56.4 9.4 69 347-416 1-70 (71)
53 PRK00194 hypothetical protein; 98.1 4.6E-06 1E-10 69.6 4.5 73 342-416 1-75 (90)
54 cd04902 ACT_3PGDH-xct C-termin 98.0 1.7E-05 3.8E-10 62.4 6.5 69 103-173 2-72 (73)
55 PRK00194 hypothetical protein; 98.0 1E-05 2.3E-10 67.5 5.4 73 98-170 1-75 (90)
56 cd04889 ACT_PDH-BS-like C-term 98.0 1.7E-05 3.7E-10 60.6 6.1 46 103-148 1-47 (56)
57 cd04883 ACT_AcuB C-terminal AC 98.0 3.7E-05 7.9E-10 60.8 7.9 62 346-409 3-64 (72)
58 PRK04435 hypothetical protein; 97.9 0.0001 2.2E-09 68.4 11.1 76 343-419 68-145 (147)
59 cd04889 ACT_PDH-BS-like C-term 97.9 2.9E-05 6.3E-10 59.3 6.3 47 347-394 1-47 (56)
60 cd04877 ACT_TyrR N-terminal AC 97.9 9E-05 1.9E-09 60.1 9.1 70 102-173 2-71 (74)
61 cd04880 ACT_AAAH-PDT-like ACT 97.9 8.6E-05 1.9E-09 60.0 8.9 68 346-413 1-71 (75)
62 cd02116 ACT ACT domains are co 97.9 7.1E-05 1.5E-09 52.4 7.4 59 347-406 1-59 (60)
63 cd04886 ACT_ThrD-II-like C-ter 97.9 6.4E-05 1.4E-09 57.9 7.4 63 347-409 1-67 (73)
64 cd04876 ACT_RelA-SpoT ACT dom 97.8 0.00013 2.9E-09 53.8 8.6 68 103-170 1-70 (71)
65 cd04905 ACT_CM-PDT C-terminal 97.8 0.00015 3.2E-09 59.5 9.6 67 345-411 2-71 (80)
66 cd04887 ACT_MalLac-Enz ACT_Mal 97.8 0.00017 3.6E-09 57.5 9.4 68 102-169 1-70 (74)
67 cd04869 ACT_GcvR_2 ACT domains 97.8 5.8E-05 1.3E-09 61.2 6.9 63 347-409 2-69 (81)
68 cd04909 ACT_PDH-BS C-terminal 97.8 9E-05 2E-09 58.5 7.5 63 345-408 2-64 (69)
69 cd04884 ACT_CBS C-terminal ACT 97.8 0.00015 3.3E-09 58.2 8.4 67 347-413 2-70 (72)
70 cd04872 ACT_1ZPV ACT domain pr 97.7 3E-05 6.6E-10 64.8 4.1 69 344-414 1-71 (88)
71 cd04909 ACT_PDH-BS C-terminal 97.7 0.00013 2.8E-09 57.6 7.3 61 101-162 2-64 (69)
72 cd04905 ACT_CM-PDT C-terminal 97.7 0.00022 4.9E-09 58.5 8.9 65 101-165 2-71 (80)
73 cd04872 ACT_1ZPV ACT domain pr 97.7 5.3E-05 1.1E-09 63.4 5.1 71 100-170 1-73 (88)
74 PRK07431 aspartate kinase; Pro 97.7 0.011 2.4E-07 65.4 24.3 291 107-481 278-577 (587)
75 PRK04435 hypothetical protein; 97.7 0.00024 5.1E-09 65.9 9.5 76 98-173 67-145 (147)
76 cd04880 ACT_AAAH-PDT-like ACT 97.6 0.00031 6.7E-09 56.8 8.4 65 103-167 2-71 (75)
77 cd04882 ACT_Bt0572_2 C-termina 97.6 0.00017 3.8E-09 55.4 6.6 48 347-394 2-49 (65)
78 cd04883 ACT_AcuB C-terminal AC 97.6 0.00022 4.7E-09 56.4 7.1 60 102-163 3-64 (72)
79 cd04869 ACT_GcvR_2 ACT domains 97.6 0.00021 4.6E-09 58.0 6.6 62 103-164 2-70 (81)
80 cd04884 ACT_CBS C-terminal ACT 97.6 0.00039 8.5E-09 55.8 8.0 64 103-166 2-69 (72)
81 COG4747 ACT domain-containing 97.5 0.00028 6.1E-09 64.6 7.3 124 98-252 1-132 (142)
82 cd04886 ACT_ThrD-II-like C-ter 97.5 0.00039 8.5E-09 53.5 7.0 61 103-163 1-67 (73)
83 PF13740 ACT_6: ACT domain; PD 97.5 0.00068 1.5E-08 55.6 8.5 64 100-163 2-65 (76)
84 cd04875 ACT_F4HF-DF N-terminal 97.5 0.00029 6.4E-09 56.9 6.2 64 346-409 1-66 (74)
85 PRK11092 bifunctional (p)ppGpp 97.5 0.00067 1.5E-08 77.0 11.0 90 324-418 610-700 (702)
86 cd02116 ACT ACT domains are co 97.4 0.00077 1.7E-08 47.0 7.0 57 103-160 1-59 (60)
87 cd04882 ACT_Bt0572_2 C-termina 97.4 0.00051 1.1E-08 52.8 6.6 55 103-161 2-58 (65)
88 cd04900 ACT_UUR-like_1 ACT dom 97.4 0.0012 2.7E-08 53.5 8.6 63 346-408 3-71 (73)
89 cd04875 ACT_F4HF-DF N-terminal 97.4 0.00049 1.1E-08 55.6 6.1 62 102-163 1-66 (74)
90 cd04870 ACT_PSP_1 CT domains f 97.3 0.00044 9.6E-09 56.3 5.7 62 347-410 2-64 (75)
91 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0016 3.4E-08 50.6 8.5 59 346-406 2-66 (70)
92 cd04873 ACT_UUR-ACR-like ACT d 97.3 0.0013 2.8E-08 51.1 8.0 49 102-150 2-50 (70)
93 PRK11589 gcvR glycine cleavage 97.3 0.003 6.5E-08 61.3 12.2 132 208-411 24-167 (190)
94 cd04870 ACT_PSP_1 CT domains f 97.3 0.00054 1.2E-08 55.8 5.7 62 103-164 2-64 (75)
95 PRK10872 relA (p)ppGpp synthet 97.2 0.0017 3.8E-08 74.1 11.0 91 324-418 650-741 (743)
96 TIGR00691 spoT_relA (p)ppGpp s 97.2 0.0017 3.7E-08 73.5 10.6 88 324-416 594-682 (683)
97 COG4492 PheB ACT domain-contai 97.2 0.0016 3.5E-08 60.6 8.5 75 343-418 71-147 (150)
98 COG4492 PheB ACT domain-contai 97.2 0.0017 3.8E-08 60.4 8.6 75 98-172 70-147 (150)
99 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0025 5.5E-08 50.0 8.3 62 102-163 2-69 (70)
100 cd04926 ACT_ACR_4 C-terminal 97.1 0.0024 5.2E-08 51.9 8.1 45 102-146 3-47 (72)
101 cd04925 ACT_ACR_2 ACT domain-c 97.1 0.0021 4.6E-08 52.6 7.7 62 346-409 2-71 (74)
102 PF13740 ACT_6: ACT domain; PD 97.1 0.0033 7.1E-08 51.6 8.5 64 344-409 2-65 (76)
103 cd04927 ACT_ACR-like_2 Second 97.1 0.0037 7.9E-08 51.7 8.5 63 346-408 2-69 (76)
104 cd04899 ACT_ACR-UUR-like_2 C-t 97.0 0.0054 1.2E-07 48.2 8.8 61 346-408 2-68 (70)
105 cd04904 ACT_AAAH ACT domain of 97.0 0.0052 1.1E-07 50.3 9.0 69 346-414 2-71 (74)
106 cd04926 ACT_ACR_4 C-terminal 97.0 0.0045 9.8E-08 50.3 8.3 46 346-393 3-48 (72)
107 cd04900 ACT_UUR-like_1 ACT dom 97.0 0.005 1.1E-07 49.9 8.5 61 102-162 3-71 (73)
108 cd04930 ACT_TH ACT domain of t 97.0 0.0057 1.2E-07 55.0 9.6 72 344-415 41-113 (115)
109 cd04925 ACT_ACR_2 ACT domain-c 97.0 0.0037 8.1E-08 51.1 7.6 62 102-163 2-71 (74)
110 cd04893 ACT_GcvR_1 ACT domains 96.9 0.0026 5.6E-08 52.5 6.5 63 101-163 2-64 (77)
111 cd04904 ACT_AAAH ACT domain of 96.9 0.0057 1.2E-07 50.1 8.3 67 102-168 2-71 (74)
112 COG4747 ACT domain-containing 96.9 0.0019 4.2E-08 59.2 5.9 124 342-486 1-132 (142)
113 PRK11092 bifunctional (p)ppGpp 96.7 0.01 2.2E-07 67.7 11.5 117 53-172 582-700 (702)
114 PRK13011 formyltetrahydrofolat 96.7 0.0039 8.4E-08 63.9 7.2 70 96-165 3-75 (286)
115 cd04893 ACT_GcvR_1 ACT domains 96.7 0.0052 1.1E-07 50.7 6.6 63 345-409 2-64 (77)
116 cd04928 ACT_TyrKc Uncharacteri 96.7 0.0099 2.1E-07 49.2 8.1 41 345-385 2-42 (68)
117 cd04931 ACT_PAH ACT domain of 96.7 0.0098 2.1E-07 51.4 8.3 68 343-410 13-82 (90)
118 cd04927 ACT_ACR-like_2 Second 96.7 0.0094 2E-07 49.3 7.9 61 102-162 2-69 (76)
119 PRK13011 formyltetrahydrofolat 96.7 0.0057 1.2E-07 62.6 7.9 71 340-410 3-74 (286)
120 PRK05092 PII uridylyl-transfer 96.6 0.1 2.2E-06 61.2 18.6 67 344-411 843-915 (931)
121 PRK11589 gcvR glycine cleavage 96.6 0.013 2.9E-07 56.9 9.4 120 97-226 5-129 (190)
122 TIGR01693 UTase_glnD [Protein- 96.6 0.031 6.8E-07 64.6 14.0 65 344-408 779-847 (850)
123 COG0317 SpoT Guanosine polypho 96.5 0.014 3E-07 66.6 10.6 88 325-417 612-700 (701)
124 COG1707 ACT domain-containing 96.5 0.0098 2.1E-07 57.6 7.9 84 344-428 2-85 (218)
125 PRK11790 D-3-phosphoglycerate 96.5 0.0043 9.4E-08 66.2 5.9 72 99-172 337-408 (409)
126 cd04930 ACT_TH ACT domain of t 96.4 0.017 3.7E-07 52.0 8.5 71 99-169 40-113 (115)
127 cd04895 ACT_ACR_1 ACT domain-c 96.4 0.021 4.5E-07 47.7 8.1 62 345-407 2-69 (72)
128 cd04931 ACT_PAH ACT domain of 96.3 0.02 4.2E-07 49.5 7.8 64 99-162 13-80 (90)
129 PRK06027 purU formyltetrahydro 96.3 0.031 6.6E-07 57.3 10.4 70 341-410 3-74 (286)
130 PRK06027 purU formyltetrahydro 96.3 0.0093 2E-07 61.0 6.6 67 98-164 4-74 (286)
131 PRK11790 D-3-phosphoglycerate 96.2 0.0093 2E-07 63.7 6.8 72 343-418 337-408 (409)
132 TIGR00691 spoT_relA (p)ppGpp s 96.2 0.041 8.9E-07 62.6 12.1 114 52-170 567-682 (683)
133 cd04928 ACT_TyrKc Uncharacteri 96.2 0.026 5.6E-07 46.7 7.8 47 101-147 2-49 (68)
134 PRK00275 glnD PII uridylyl-tra 96.1 0.15 3.3E-06 59.7 16.0 65 345-410 815-885 (895)
135 cd04929 ACT_TPH ACT domain of 96.0 0.039 8.4E-07 45.9 8.1 63 346-408 2-65 (74)
136 cd04895 ACT_ACR_1 ACT domain-c 96.0 0.037 7.9E-07 46.3 8.0 61 101-161 2-69 (72)
137 COG1707 ACT domain-containing 96.0 0.023 5E-07 55.1 7.6 80 101-181 3-84 (218)
138 TIGR00719 sda_beta L-serine de 96.0 0.017 3.7E-07 56.3 7.0 58 344-401 148-207 (208)
139 cd04885 ACT_ThrD-I Tandem C-te 95.9 0.035 7.6E-07 44.5 7.2 60 347-408 1-61 (68)
140 COG0317 SpoT Guanosine polypho 95.9 0.058 1.2E-06 61.6 11.4 113 52-171 581-700 (701)
141 PRK13581 D-3-phosphoglycerate 95.9 0.014 3.1E-07 64.1 6.4 74 99-172 451-524 (526)
142 TIGR01127 ilvA_1Cterm threonin 95.9 0.035 7.5E-07 58.0 9.0 67 343-409 304-374 (380)
143 PRK07334 threonine dehydratase 95.9 0.037 7.9E-07 58.7 9.2 66 344-409 326-395 (403)
144 cd04896 ACT_ACR-like_3 ACT dom 95.9 0.034 7.4E-07 46.8 7.1 63 346-408 2-70 (75)
145 cd04929 ACT_TPH ACT domain of 95.8 0.046 1E-06 45.5 7.7 61 102-162 2-65 (74)
146 COG2150 Predicted regulator of 95.8 0.023 5E-07 54.4 6.6 70 345-416 94-165 (167)
147 PRK11899 prephenate dehydratas 95.7 0.056 1.2E-06 55.4 9.4 72 344-415 194-268 (279)
148 PRK10872 relA (p)ppGpp synthet 95.7 0.05 1.1E-06 62.6 9.8 118 52-172 620-741 (743)
149 COG2716 GcvR Glycine cleavage 95.6 0.015 3.3E-07 56.1 4.7 74 97-170 89-169 (176)
150 PRK13581 D-3-phosphoglycerate 95.6 0.027 5.9E-07 61.9 7.0 73 344-418 452-524 (526)
151 PRK07431 aspartate kinase; Pro 95.3 0.67 1.5E-05 51.5 16.9 200 108-410 359-580 (587)
152 PRK11899 prephenate dehydratas 95.3 0.11 2.3E-06 53.4 9.9 71 99-169 193-268 (279)
153 TIGR00719 sda_beta L-serine de 95.3 0.038 8.2E-07 54.0 6.3 57 99-155 147-207 (208)
154 cd04896 ACT_ACR-like_3 ACT dom 95.2 0.076 1.6E-06 44.8 6.9 61 102-162 2-70 (75)
155 PRK07334 threonine dehydratase 95.2 0.077 1.7E-06 56.3 8.7 64 100-163 326-395 (403)
156 cd04897 ACT_ACR_3 ACT domain-c 95.1 0.082 1.8E-06 44.5 6.9 62 102-163 3-71 (75)
157 PRK06382 threonine dehydratase 95.0 0.083 1.8E-06 56.2 8.3 66 343-409 329-399 (406)
158 COG2716 GcvR Glycine cleavage 95.0 0.023 4.9E-07 55.0 3.7 72 344-415 92-168 (176)
159 TIGR00655 PurU formyltetrahydr 95.0 0.054 1.2E-06 55.5 6.5 61 102-162 2-66 (280)
160 TIGR01127 ilvA_1Cterm threonin 95.0 0.1 2.2E-06 54.5 8.8 65 99-163 304-374 (380)
161 PRK13010 purU formyltetrahydro 95.0 0.042 9.1E-07 56.6 5.7 40 95-134 4-43 (289)
162 PRK13010 purU formyltetrahydro 94.9 0.32 7E-06 50.2 12.1 78 340-417 5-89 (289)
163 cd04897 ACT_ACR_3 ACT domain-c 94.9 0.11 2.3E-06 43.9 7.1 63 346-409 3-71 (75)
164 TIGR01327 PGDH D-3-phosphoglyc 94.9 0.039 8.5E-07 60.7 5.6 72 99-172 450-523 (525)
165 PRK08198 threonine dehydratase 94.8 0.14 3E-06 54.1 9.3 67 343-409 326-396 (404)
166 PRK06382 threonine dehydratase 94.7 0.12 2.7E-06 54.9 8.6 65 99-163 329-399 (406)
167 COG2061 ACT-domain-containing 94.7 1.6 3.4E-05 42.1 14.9 138 342-482 3-153 (170)
168 cd04935 ACT_AKiii-DAPDC_1 ACT 94.5 0.12 2.7E-06 42.7 6.4 56 351-412 11-71 (75)
169 cd04891 ACT_AK-LysC-DapG-like_ 94.5 0.15 3.3E-06 37.7 6.4 53 351-406 8-60 (61)
170 TIGR00655 PurU formyltetrahydr 94.4 0.096 2.1E-06 53.7 6.8 64 345-408 1-66 (280)
171 TIGR01327 PGDH D-3-phosphoglyc 94.4 0.075 1.6E-06 58.5 6.4 73 344-418 451-523 (525)
172 cd04913 ACT_AKii-LysC-BS-like_ 94.3 0.11 2.4E-06 40.2 5.5 54 107-162 9-63 (75)
173 cd04906 ACT_ThrD-I_1 First of 94.3 0.22 4.8E-06 41.7 7.7 75 345-424 2-78 (85)
174 COG0077 PheA Prephenate dehydr 94.3 0.22 4.7E-06 51.5 9.0 75 341-415 191-268 (279)
175 cd04885 ACT_ThrD-I Tandem C-te 94.2 0.22 4.7E-06 39.9 7.1 59 103-162 1-61 (68)
176 PRK06545 prephenate dehydrogen 94.2 0.13 2.8E-06 53.7 7.3 67 99-166 289-357 (359)
177 cd04935 ACT_AKiii-DAPDC_1 ACT 94.2 0.17 3.7E-06 41.9 6.6 57 107-167 11-72 (75)
178 cd04891 ACT_AK-LysC-DapG-like_ 94.1 0.18 3.8E-06 37.4 6.0 52 107-160 8-60 (61)
179 cd04912 ACT_AKiii-LysC-EC-like 94.1 0.21 4.5E-06 40.8 6.9 52 351-408 11-67 (75)
180 cd04913 ACT_AKii-LysC-BS-like_ 94.1 0.12 2.6E-06 40.0 5.2 55 351-408 9-63 (75)
181 PRK06545 prephenate dehydrogen 94.0 0.15 3.2E-06 53.3 7.2 65 344-411 290-356 (359)
182 COG0077 PheA Prephenate dehydr 94.0 0.26 5.6E-06 51.0 8.8 73 98-170 192-269 (279)
183 TIGR01270 Trp_5_monoox tryptop 93.8 0.31 6.8E-06 53.5 9.6 80 337-416 24-105 (464)
184 cd04871 ACT_PSP_2 ACT domains 93.7 0.055 1.2E-06 45.7 2.8 61 103-164 2-73 (84)
185 PRK08198 threonine dehydratase 93.6 0.32 7E-06 51.3 9.0 66 98-163 325-396 (404)
186 PRK12483 threonine dehydratase 93.5 1.8 3.9E-05 48.2 14.8 133 343-484 344-504 (521)
187 cd04871 ACT_PSP_2 ACT domains 93.4 0.079 1.7E-06 44.8 3.4 64 347-410 2-73 (84)
188 cd04932 ACT_AKiii-LysC-EC_1 AC 93.4 0.19 4.1E-06 41.7 5.5 56 351-412 11-71 (75)
189 TIGR00656 asp_kin_monofn aspar 93.3 0.63 1.4E-05 49.0 10.7 127 345-481 261-395 (401)
190 PRK08818 prephenate dehydrogen 93.3 0.14 3.1E-06 54.4 5.9 51 344-395 295-346 (370)
191 PRK10622 pheA bifunctional cho 93.2 0.37 8.1E-06 51.5 8.8 71 99-169 296-371 (386)
192 PRK11898 prephenate dehydratas 93.1 0.47 1E-05 48.6 9.0 68 99-166 195-268 (283)
193 PRK10622 pheA bifunctional cho 93.1 0.43 9.3E-06 51.1 9.0 72 344-415 297-371 (386)
194 PRK08818 prephenate dehydrogen 92.9 0.27 5.8E-06 52.4 7.2 51 99-149 294-346 (370)
195 PRK12483 threonine dehydratase 92.9 2.3 5.1E-05 47.3 14.6 132 99-250 344-504 (521)
196 COG2150 Predicted regulator of 92.9 0.39 8.6E-06 46.2 7.4 72 98-171 91-166 (167)
197 cd04906 ACT_ThrD-I_1 First of 92.8 0.85 1.8E-05 38.3 8.7 75 101-179 2-79 (85)
198 PRK11898 prephenate dehydratas 92.6 0.62 1.3E-05 47.7 9.1 68 344-411 196-267 (283)
199 cd04934 ACT_AK-Hom3_1 CT domai 92.6 0.32 7E-06 40.2 5.7 56 351-412 11-69 (73)
200 PLN02550 threonine dehydratase 92.2 2.9 6.3E-05 47.4 14.4 134 343-485 416-575 (591)
201 cd04932 ACT_AKiii-LysC-EC_1 AC 92.2 0.39 8.4E-06 39.9 5.8 56 107-166 11-71 (75)
202 cd04919 ACT_AK-Hom3_2 ACT doma 92.0 0.47 1E-05 36.8 5.8 51 352-408 12-62 (66)
203 cd04936 ACT_AKii-LysC-BS-like_ 92.0 0.68 1.5E-05 34.9 6.5 51 351-409 10-60 (63)
204 cd04912 ACT_AKiii-LysC-EC-like 92.0 0.66 1.4E-05 37.9 6.9 53 106-162 10-67 (75)
205 PLN02317 arogenate dehydratase 92.0 0.76 1.6E-05 49.5 9.1 72 344-415 283-371 (382)
206 PRK03059 PII uridylyl-transfer 91.9 0.46 1E-05 55.5 8.0 67 344-412 786-856 (856)
207 cd04890 ACT_AK-like_1 ACT doma 91.7 0.52 1.1E-05 36.4 5.7 49 108-160 11-61 (62)
208 cd04890 ACT_AK-like_1 ACT doma 91.7 0.46 1E-05 36.7 5.4 49 352-406 11-61 (62)
209 PRK06635 aspartate kinase; Rev 91.7 0.78 1.7E-05 48.4 8.8 124 107-247 270-398 (404)
210 PRK03059 PII uridylyl-transfer 91.6 0.56 1.2E-05 54.9 8.3 68 99-166 785-856 (856)
211 PRK15385 magnesium transport p 91.5 1.7 3.6E-05 43.8 10.3 73 344-416 142-219 (225)
212 TIGR00656 asp_kin_monofn aspar 91.4 1.7 3.6E-05 45.9 10.9 130 101-247 261-395 (401)
213 cd04934 ACT_AK-Hom3_1 CT domai 91.3 0.61 1.3E-05 38.5 6.0 55 108-166 12-69 (73)
214 PRK05092 PII uridylyl-transfer 91.3 0.67 1.5E-05 54.5 8.5 66 99-165 842-915 (931)
215 cd04922 ACT_AKi-HSDH-ThrA_2 AC 91.1 0.71 1.5E-05 35.5 5.9 51 352-408 12-62 (66)
216 PRK06635 aspartate kinase; Rev 91.0 1.9 4.2E-05 45.5 10.9 121 351-481 270-398 (404)
217 TIGR01268 Phe4hydrox_tetr phen 91.0 1 2.2E-05 49.3 8.9 67 344-410 16-84 (436)
218 COG3830 ACT domain-containing 90.9 0.33 7.2E-06 42.6 4.2 52 342-395 1-52 (90)
219 cd04924 ACT_AK-Arch_2 ACT doma 90.6 0.77 1.7E-05 35.2 5.6 52 352-409 12-63 (66)
220 TIGR01270 Trp_5_monoox tryptop 90.2 1.2 2.6E-05 49.1 8.6 72 99-170 30-105 (464)
221 cd04916 ACT_AKiii-YclM-BS_2 AC 90.2 0.9 2E-05 34.9 5.7 52 351-408 11-62 (66)
222 cd04933 ACT_AK1-AT_1 ACT domai 90.0 0.83 1.8E-05 38.6 5.7 52 351-408 11-70 (78)
223 PRK03381 PII uridylyl-transfer 90.0 0.78 1.7E-05 53.1 7.4 63 345-409 600-665 (774)
224 PRK03381 PII uridylyl-transfer 89.8 0.71 1.5E-05 53.5 6.9 37 344-380 707-743 (774)
225 PLN02550 threonine dehydratase 89.7 8.3 0.00018 43.9 15.0 135 98-251 415-575 (591)
226 PLN02317 arogenate dehydratase 89.6 1.6 3.4E-05 47.1 8.8 70 100-169 283-371 (382)
227 TIGR01693 UTase_glnD [Protein- 89.5 1 2.2E-05 52.5 8.0 135 344-495 668-816 (850)
228 TIGR01268 Phe4hydrox_tetr phen 89.5 1.3 2.9E-05 48.4 8.3 65 100-164 16-84 (436)
229 PRK02047 hypothetical protein; 89.3 4.1 8.8E-05 35.4 9.6 73 343-415 15-90 (91)
230 cd04892 ACT_AK-like_2 ACT doma 89.0 1.4 3.1E-05 32.6 5.9 53 351-409 10-62 (65)
231 PRK08210 aspartate kinase I; R 88.8 6.1 0.00013 41.9 12.6 119 346-481 273-397 (403)
232 PRK05007 PII uridylyl-transfer 88.7 1.3 2.8E-05 52.1 8.1 66 345-410 702-772 (884)
233 COG2061 ACT-domain-containing 88.3 11 0.00023 36.6 12.4 136 98-248 3-153 (170)
234 PRK15385 magnesium transport p 88.3 3.9 8.5E-05 41.2 10.0 74 98-171 140-220 (225)
235 cd04918 ACT_AK1-AT_2 ACT domai 88.2 1.5 3.2E-05 34.8 5.8 50 353-408 12-61 (65)
236 cd04933 ACT_AK1-AT_1 ACT domai 88.0 1.5 3.4E-05 36.9 6.0 52 107-162 11-70 (78)
237 cd04919 ACT_AK-Hom3_2 ACT doma 88.0 1.4 3E-05 34.1 5.4 51 108-162 12-62 (66)
238 cd04892 ACT_AK-like_2 ACT doma 87.8 1.5 3.3E-05 32.5 5.4 52 107-162 10-61 (65)
239 PRK01759 glnD PII uridylyl-tra 87.7 1.4 3.1E-05 51.5 7.6 127 345-492 678-817 (854)
240 COG0527 LysC Aspartokinases [A 87.6 6.6 0.00014 43.1 12.1 123 346-481 312-441 (447)
241 PF13840 ACT_7: ACT domain ; P 87.3 1.4 3E-05 35.4 5.1 46 353-407 19-64 (65)
242 PRK08210 aspartate kinase I; R 86.9 8.8 0.00019 40.8 12.3 123 102-247 273-397 (403)
243 cd04922 ACT_AKi-HSDH-ThrA_2 AC 86.7 1.7 3.8E-05 33.3 5.3 51 107-161 11-61 (66)
244 PRK08639 threonine dehydratase 86.6 4.4 9.6E-05 43.5 10.0 80 343-425 335-416 (420)
245 PRK08526 threonine dehydratase 86.1 3.4 7.3E-05 44.4 8.8 67 343-409 325-395 (403)
246 cd04914 ACT_AKi-DapG-BS_1 ACT 86.0 1.9 4E-05 34.8 5.3 38 351-394 9-46 (67)
247 PRK09084 aspartate kinase III; 85.9 14 0.0003 40.3 13.4 113 353-481 318-442 (448)
248 PRK05007 PII uridylyl-transfer 85.8 2.3 5.1E-05 50.0 8.0 66 344-410 808-878 (884)
249 COG3830 ACT domain-containing 85.7 0.81 1.7E-05 40.2 3.2 71 98-170 1-79 (90)
250 PRK00275 glnD PII uridylyl-tra 85.7 2.2 4.9E-05 50.3 7.8 65 100-164 814-885 (895)
251 PF04350 PilO: Pilus assembly 85.7 2 4.4E-05 38.3 5.9 65 109-173 51-120 (144)
252 TIGR02079 THD1 threonine dehyd 85.2 5.3 0.00011 42.9 9.7 80 343-425 324-405 (409)
253 COG0788 PurU Formyltetrahydrof 85.1 6.8 0.00015 40.8 9.9 146 342-503 5-179 (287)
254 PRK04374 PII uridylyl-transfer 84.8 2.6 5.6E-05 49.7 7.8 66 344-410 796-866 (869)
255 cd04924 ACT_AK-Arch_2 ACT doma 84.7 2.4 5.1E-05 32.5 5.1 52 107-162 11-62 (66)
256 cd04923 ACT_AK-LysC-DapG-like_ 84.7 3 6.4E-05 31.4 5.6 50 351-408 10-59 (63)
257 PRK04998 hypothetical protein; 84.6 9.5 0.00021 32.8 9.2 72 343-414 14-86 (88)
258 cd04936 ACT_AKii-LysC-BS-like_ 84.4 4 8.6E-05 30.7 6.2 50 107-162 10-59 (63)
259 COG0788 PurU Formyltetrahydrof 84.2 2.2 4.7E-05 44.3 6.0 206 98-320 5-248 (287)
260 PLN02551 aspartokinase 84.1 13 0.00027 41.7 12.3 113 353-481 378-504 (521)
261 PRK04374 PII uridylyl-transfer 84.1 3.1 6.8E-05 49.0 8.0 65 345-409 691-758 (869)
262 PRK08961 bifunctional aspartat 83.8 17 0.00036 42.9 13.7 114 352-481 333-456 (861)
263 cd04916 ACT_AKiii-YclM-BS_2 AC 83.7 3.1 6.8E-05 31.9 5.4 52 107-162 11-62 (66)
264 cd04915 ACT_AK-Ectoine_2 ACT d 83.4 3.2 6.9E-05 33.3 5.5 49 354-408 14-62 (66)
265 PRK00907 hypothetical protein; 83.3 8.8 0.00019 33.7 8.6 73 343-415 16-91 (92)
266 cd04937 ACT_AKi-DapG-BS_2 ACT 83.1 3.7 8E-05 32.3 5.7 50 352-409 12-61 (64)
267 PRK14434 acylphosphatase; Prov 83.0 2.9 6.2E-05 36.3 5.4 44 439-482 17-64 (92)
268 cd04911 ACT_AKiii-YclM-BS_1 AC 82.9 3.2 6.9E-05 35.3 5.5 60 350-415 10-72 (76)
269 PF13840 ACT_7: ACT domain ; P 82.3 2.1 4.5E-05 34.4 4.0 54 101-161 7-64 (65)
270 PRK01759 glnD PII uridylyl-tra 82.2 4.1 8.8E-05 47.9 7.9 39 101-139 678-716 (854)
271 PRK09034 aspartate kinase; Rev 81.7 20 0.00043 39.1 12.5 116 353-481 320-445 (454)
272 cd04921 ACT_AKi-HSDH-ThrA-like 81.7 5.5 0.00012 32.0 6.3 40 351-394 11-50 (80)
273 cd04868 ACT_AK-like ACT domain 81.5 4.5 9.8E-05 29.2 5.3 48 353-406 12-59 (60)
274 PF09383 NIL: NIL domain; Int 80.9 6.6 0.00014 32.0 6.6 46 209-254 19-75 (76)
275 PRK09977 putative Mg(2+) trans 80.9 11 0.00023 37.8 9.2 69 345-416 145-213 (215)
276 TIGR00657 asp_kinases aspartat 80.6 15 0.00033 39.5 11.0 114 355-481 315-436 (441)
277 PRK06291 aspartate kinase; Pro 80.5 11 0.00024 41.1 10.1 119 353-481 333-458 (465)
278 COG0527 LysC Aspartokinases [A 80.4 14 0.0003 40.7 10.7 127 102-247 312-441 (447)
279 TIGR01124 ilvA_2Cterm threonin 80.1 10 0.00022 42.1 9.7 77 343-424 324-401 (499)
280 PF04350 PilO: Pilus assembly 79.9 6.2 0.00013 35.2 6.7 68 353-420 51-121 (144)
281 PRK09181 aspartate kinase; Val 79.6 20 0.00044 39.6 11.7 114 353-480 341-460 (475)
282 cd04868 ACT_AK-like ACT domain 79.6 6.4 0.00014 28.4 5.6 47 109-159 12-58 (60)
283 cd04914 ACT_AKi-DapG-BS_1 ACT 79.4 5 0.00011 32.3 5.4 38 107-148 9-46 (67)
284 cd04918 ACT_AK1-AT_2 ACT domai 79.3 5.4 0.00012 31.6 5.4 50 109-162 12-61 (65)
285 cd04911 ACT_AKiii-YclM-BS_1 AC 79.2 5 0.00011 34.2 5.4 59 107-169 11-72 (76)
286 PRK08526 threonine dehydratase 78.7 9.1 0.0002 41.2 8.6 66 98-163 324-395 (403)
287 PF09383 NIL: NIL domain; Int 78.6 8.2 0.00018 31.5 6.5 59 430-488 4-75 (76)
288 PLN02551 aspartokinase 78.4 36 0.00077 38.2 13.3 117 109-247 378-504 (521)
289 PRK14434 acylphosphatase; Prov 78.3 4.4 9.5E-05 35.2 5.0 39 210-248 22-64 (92)
290 cd04923 ACT_AK-LysC-DapG-like_ 78.3 11 0.00025 28.2 6.8 38 107-148 10-47 (63)
291 PRK14426 acylphosphatase; Prov 78.2 6 0.00013 34.2 5.8 45 439-483 19-65 (92)
292 PRK08639 threonine dehydratase 77.9 15 0.00033 39.5 10.0 80 98-180 334-417 (420)
293 PF02700 PurS: Phosphoribosylf 77.7 9.8 0.00021 32.5 6.8 55 345-406 1-65 (80)
294 PRK14429 acylphosphatase; Prov 77.4 6.9 0.00015 33.6 5.9 44 439-482 17-62 (90)
295 PRK09977 putative Mg(2+) trans 76.2 16 0.00036 36.5 9.0 69 100-170 144-213 (215)
296 PRK09224 threonine dehydratase 76.0 16 0.00034 40.5 9.7 77 343-424 327-405 (504)
297 PF00708 Acylphosphatase: Acyl 75.9 5.7 0.00012 33.7 5.0 43 440-482 20-64 (91)
298 TIGR02079 THD1 threonine dehyd 75.8 20 0.00043 38.6 10.1 80 99-180 324-406 (409)
299 PRK09084 aspartate kinase III; 75.6 42 0.00092 36.6 12.7 126 100-247 304-442 (448)
300 cd04920 ACT_AKiii-DAPDC_2 ACT 74.5 9.8 0.00021 30.1 5.7 49 352-408 11-59 (63)
301 PRK14428 acylphosphatase; Prov 74.4 9.4 0.0002 33.7 6.0 44 439-482 23-68 (97)
302 cd04917 ACT_AKiii-LysC-EC_2 AC 74.3 10 0.00022 29.6 5.7 49 352-408 12-60 (64)
303 PRK14445 acylphosphatase; Prov 74.2 8.4 0.00018 33.2 5.6 44 439-482 19-64 (91)
304 PRK14420 acylphosphatase; Prov 74.0 8.6 0.00019 33.0 5.6 44 439-482 17-62 (91)
305 PRK09466 metL bifunctional asp 74.0 45 0.00097 39.4 13.1 116 353-481 329-449 (810)
306 cd04921 ACT_AKi-HSDH-ThrA-like 73.8 11 0.00024 30.2 6.0 40 107-148 11-50 (80)
307 PRK00341 hypothetical protein; 73.7 23 0.0005 30.9 8.2 70 344-414 17-89 (91)
308 PRK14426 acylphosphatase; Prov 73.4 6.4 0.00014 34.0 4.7 40 210-249 24-65 (92)
309 TIGR01124 ilvA_2Cterm threonin 73.3 22 0.00048 39.5 10.0 75 99-177 324-400 (499)
310 PF10741 T2SM_b: Type II secre 73.1 17 0.00037 31.8 7.5 64 111-174 16-84 (110)
311 PRK09034 aspartate kinase; Rev 72.3 34 0.00074 37.4 11.0 118 109-247 320-445 (454)
312 PF00585 Thr_dehydrat_C: C-ter 72.0 32 0.00068 29.7 8.6 79 342-424 8-87 (91)
313 PRK14422 acylphosphatase; Prov 72.0 10 0.00023 32.9 5.7 44 439-482 21-66 (93)
314 PRK14449 acylphosphatase; Prov 71.8 10 0.00022 32.6 5.6 44 439-482 18-63 (90)
315 PRK14436 acylphosphatase; Prov 71.6 11 0.00024 32.6 5.8 44 439-482 19-64 (91)
316 PF04455 Saccharop_dh_N: LOR/S 71.4 9.4 0.0002 34.3 5.4 57 355-412 15-74 (103)
317 PRK14442 acylphosphatase; Prov 71.2 10 0.00022 32.8 5.4 44 439-482 19-64 (91)
318 PRK14429 acylphosphatase; Prov 71.0 10 0.00022 32.6 5.4 39 210-248 22-62 (90)
319 PRK14444 acylphosphatase; Prov 70.6 12 0.00027 32.3 5.8 43 439-481 19-63 (92)
320 cd04910 ACT_AK-Ectoine_1 ACT d 70.6 16 0.00035 30.6 6.3 52 110-165 14-65 (71)
321 PRK08961 bifunctional aspartat 70.4 56 0.0012 38.6 12.9 118 108-247 333-456 (861)
322 PF02700 PurS: Phosphoribosylf 70.2 21 0.00045 30.5 7.0 55 101-160 1-65 (80)
323 cd04915 ACT_AK-Ectoine_2 ACT d 69.9 23 0.00049 28.4 6.9 48 110-161 14-61 (66)
324 PRK14433 acylphosphatase; Prov 69.9 12 0.00026 32.1 5.6 44 439-482 16-61 (87)
325 PF04359 DUF493: Protein of un 69.7 27 0.00058 29.4 7.6 73 343-415 9-84 (85)
326 cd04937 ACT_AKi-DapG-BS_2 ACT 69.7 13 0.00029 29.2 5.4 50 107-162 11-60 (64)
327 PRK09224 threonine dehydratase 69.5 27 0.00058 38.8 9.6 77 98-178 326-405 (504)
328 PRK14427 acylphosphatase; Prov 69.2 14 0.0003 32.2 5.9 44 439-482 21-66 (94)
329 PRK14439 acylphosphatase; Prov 69.1 12 0.00026 36.3 5.9 46 439-484 90-137 (163)
330 PRK09181 aspartate kinase; Val 68.9 69 0.0015 35.5 12.5 119 109-247 341-461 (475)
331 PRK14421 acylphosphatase; Prov 68.9 14 0.00031 32.7 6.0 44 439-482 19-64 (99)
332 PRK14423 acylphosphatase; Prov 68.7 14 0.0003 32.0 5.8 44 439-482 20-65 (92)
333 PRK06291 aspartate kinase; Pro 68.7 33 0.00071 37.5 9.9 123 109-247 333-458 (465)
334 TIGR00657 asp_kinases aspartat 68.7 38 0.00082 36.5 10.3 118 111-247 315-436 (441)
335 PRK14447 acylphosphatase; Prov 68.6 14 0.0003 32.2 5.8 43 439-481 19-64 (95)
336 PRK14451 acylphosphatase; Prov 68.3 14 0.0003 31.9 5.6 44 439-482 18-63 (89)
337 PRK14435 acylphosphatase; Prov 68.0 12 0.00026 32.3 5.2 44 439-482 17-62 (90)
338 PRK14441 acylphosphatase; Prov 67.8 14 0.00031 32.0 5.7 44 439-482 20-65 (93)
339 PRK14428 acylphosphatase; Prov 67.3 11 0.00024 33.2 5.0 39 210-248 28-68 (97)
340 PRK14449 acylphosphatase; Prov 67.1 14 0.0003 31.8 5.4 39 210-248 23-63 (90)
341 PRK14438 acylphosphatase; Prov 67.0 16 0.00034 31.6 5.7 44 439-482 18-63 (91)
342 PRK14420 acylphosphatase; Prov 66.7 11 0.00023 32.4 4.7 39 210-248 22-62 (91)
343 PRK14446 acylphosphatase; Prov 66.2 12 0.00026 32.4 4.8 44 439-482 17-62 (88)
344 PRK14430 acylphosphatase; Prov 66.2 16 0.00035 31.7 5.7 44 439-482 19-64 (92)
345 PF00708 Acylphosphatase: Acyl 66.0 10 0.00022 32.2 4.3 39 210-248 24-64 (91)
346 COG1828 PurS Phosphoribosylfor 65.5 20 0.00043 31.2 6.0 52 345-403 2-59 (83)
347 PRK14422 acylphosphatase; Prov 65.4 14 0.0003 32.1 5.1 39 210-248 26-66 (93)
348 PRK14445 acylphosphatase; Prov 65.4 12 0.00025 32.4 4.6 39 210-248 24-64 (91)
349 PRK05925 aspartate kinase; Pro 64.9 1.6E+02 0.0034 32.5 14.1 111 354-480 311-428 (440)
350 PF10741 T2SM_b: Type II secre 64.9 40 0.00088 29.5 8.0 65 356-420 17-84 (110)
351 PRK14432 acylphosphatase; Prov 64.9 18 0.00039 31.5 5.7 44 439-482 17-63 (93)
352 PRK14425 acylphosphatase; Prov 64.4 17 0.00038 31.6 5.5 44 439-482 21-66 (94)
353 PRK14440 acylphosphatase; Prov 63.9 19 0.00042 31.0 5.7 44 439-482 18-63 (90)
354 PRK14439 acylphosphatase; Prov 63.9 15 0.00032 35.7 5.4 41 210-250 95-137 (163)
355 PRK14442 acylphosphatase; Prov 63.5 13 0.00029 32.0 4.7 39 210-248 24-64 (91)
356 PRK14433 acylphosphatase; Prov 63.5 16 0.00034 31.4 5.0 39 210-248 21-61 (87)
357 PRK14436 acylphosphatase; Prov 63.0 14 0.0003 32.0 4.7 39 210-248 24-64 (91)
358 PRK14448 acylphosphatase; Prov 62.9 20 0.00044 30.9 5.6 44 439-482 17-62 (90)
359 PRK14443 acylphosphatase; Prov 61.9 21 0.00045 31.3 5.6 45 439-483 19-65 (93)
360 PRK14645 hypothetical protein; 61.9 31 0.00066 32.9 7.1 121 107-238 5-136 (154)
361 PRK14450 acylphosphatase; Prov 61.2 22 0.00047 30.6 5.5 44 439-482 17-63 (91)
362 PRK14427 acylphosphatase; Prov 61.1 16 0.00035 31.8 4.8 39 210-248 26-66 (94)
363 PRK10820 DNA-binding transcrip 60.7 23 0.00049 39.3 7.0 68 103-173 3-71 (520)
364 PRK14423 acylphosphatase; Prov 60.7 20 0.00044 31.0 5.3 39 210-248 25-65 (92)
365 PRK14421 acylphosphatase; Prov 60.6 18 0.00039 32.1 5.0 39 210-248 24-64 (99)
366 PRK09436 thrA bifunctional asp 60.6 36 0.00079 40.1 8.9 121 352-482 326-457 (819)
367 PRK14435 acylphosphatase; Prov 60.4 15 0.00033 31.6 4.5 39 210-248 22-62 (90)
368 PRK14447 acylphosphatase; Prov 60.1 21 0.00045 31.1 5.3 38 210-247 24-64 (95)
369 PRK09466 metL bifunctional asp 60.0 1.3E+02 0.0028 35.7 13.2 121 109-248 329-450 (810)
370 cd04907 ACT_ThrD-I_2 Second of 59.9 89 0.0019 26.4 8.9 76 345-424 2-77 (81)
371 PF04455 Saccharop_dh_N: LOR/S 59.9 27 0.00058 31.5 6.0 56 111-166 15-74 (103)
372 PRK14438 acylphosphatase; Prov 59.8 19 0.00041 31.1 4.9 39 210-248 23-63 (91)
373 PF00585 Thr_dehydrat_C: C-ter 59.7 66 0.0014 27.7 8.3 78 98-179 8-88 (91)
374 PRK05783 hypothetical protein; 59.5 37 0.0008 29.5 6.6 60 343-409 1-67 (84)
375 PRK14444 acylphosphatase; Prov 59.4 18 0.0004 31.3 4.8 39 210-248 24-64 (92)
376 PRK14425 acylphosphatase; Prov 59.0 24 0.00051 30.8 5.4 39 210-248 26-66 (94)
377 PRK14637 hypothetical protein; 58.8 46 0.001 31.6 7.7 113 110-235 7-131 (151)
378 PRK14452 acylphosphatase; Prov 58.6 26 0.00056 31.5 5.7 44 439-482 35-80 (107)
379 PRK14437 acylphosphatase; Prov 58.3 22 0.00048 32.0 5.3 44 439-482 38-83 (109)
380 PRK14430 acylphosphatase; Prov 57.9 18 0.0004 31.4 4.6 39 210-248 24-64 (92)
381 cd03709 lepA_C lepA_C: This fa 57.6 41 0.00089 27.9 6.4 55 428-482 3-61 (80)
382 PRK14441 acylphosphatase; Prov 57.5 19 0.00042 31.2 4.6 39 210-248 25-65 (93)
383 TIGR01269 Tyr_3_monoox tyrosin 57.4 46 0.001 37.0 8.4 74 339-413 34-111 (457)
384 PRK14424 acylphosphatase; Prov 57.2 26 0.00057 30.7 5.4 44 439-482 22-67 (94)
385 PRK14432 acylphosphatase; Prov 56.8 25 0.00053 30.7 5.1 39 210-248 22-63 (93)
386 PRK14440 acylphosphatase; Prov 56.6 25 0.00054 30.4 5.1 39 210-248 23-63 (90)
387 PRK08841 aspartate kinase; Val 56.5 27 0.00058 37.6 6.5 60 345-412 319-378 (392)
388 PF00013 KH_1: KH domain syndr 56.1 38 0.00082 26.1 5.6 38 208-246 21-60 (60)
389 PF01985 CRS1_YhbY: CRS1 / Yhb 55.8 56 0.0012 27.7 7.1 69 151-230 4-82 (84)
390 PRK02047 hypothetical protein; 55.1 89 0.0019 27.2 8.3 71 99-169 15-90 (91)
391 cd04917 ACT_AKiii-LysC-EC_2 AC 55.1 35 0.00075 26.6 5.3 50 107-162 11-60 (64)
392 PRK00092 ribosome maturation p 54.2 59 0.0013 30.5 7.6 107 112-235 8-134 (154)
393 PF01985 CRS1_YhbY: CRS1 / Yhb 54.0 57 0.0012 27.7 6.8 35 430-464 44-82 (84)
394 PRK14448 acylphosphatase; Prov 53.2 30 0.00065 29.9 5.1 39 210-248 22-62 (90)
395 cd03710 BipA_TypA_C BipA_TypA_ 53.1 42 0.0009 27.7 5.7 55 428-482 3-60 (79)
396 cd04920 ACT_AKiii-DAPDC_2 ACT 53.1 41 0.00089 26.6 5.5 48 108-161 11-58 (63)
397 COG2844 GlnD UTP:GlnB (protein 52.9 39 0.00084 40.2 7.3 37 344-380 791-827 (867)
398 PRK10820 DNA-binding transcrip 52.9 34 0.00073 38.0 6.7 69 347-420 3-72 (520)
399 PRK14431 acylphosphatase; Prov 52.2 34 0.00074 29.6 5.2 43 439-482 17-61 (89)
400 COG2844 GlnD UTP:GlnB (protein 51.6 40 0.00086 40.1 7.1 48 98-145 789-838 (867)
401 PF08753 NikR_C: NikR C termin 51.3 1.5E+02 0.0032 24.9 9.4 70 102-171 3-74 (78)
402 PF00013 KH_1: KH domain syndr 50.9 60 0.0013 24.9 6.0 40 440-480 19-60 (60)
403 PF02641 DUF190: Uncharacteriz 50.8 18 0.00039 31.6 3.4 34 450-483 53-87 (101)
404 PRK14452 acylphosphatase; Prov 50.7 33 0.00072 30.8 5.1 39 210-248 40-80 (107)
405 PRK00227 glnD PII uridylyl-tra 50.3 63 0.0014 37.7 8.5 67 100-167 546-620 (693)
406 PRK14450 acylphosphatase; Prov 50.2 27 0.00059 30.0 4.4 39 210-248 22-63 (91)
407 PF02576 DUF150: Uncharacteris 49.7 1.2E+02 0.0026 27.8 8.8 105 117-238 2-126 (141)
408 cd04910 ACT_AK-Ectoine_1 ACT d 49.2 60 0.0013 27.3 6.1 51 354-410 14-64 (71)
409 COG1828 PurS Phosphoribosylfor 49.2 52 0.0011 28.7 5.8 52 101-157 2-59 (83)
410 TIGR00302 phosphoribosylformyl 49.2 50 0.0011 27.8 5.7 54 346-406 2-65 (80)
411 PRK14437 acylphosphatase; Prov 49.2 28 0.00061 31.3 4.4 39 210-248 43-83 (109)
412 PRK14443 acylphosphatase; Prov 48.6 29 0.00064 30.4 4.3 39 210-248 24-64 (93)
413 PRK14640 hypothetical protein; 48.2 50 0.0011 31.2 6.2 109 113-238 8-136 (152)
414 PRK14451 acylphosphatase; Prov 48.0 25 0.00055 30.3 3.8 39 210-248 23-63 (89)
415 PRK14431 acylphosphatase; Prov 48.0 33 0.00072 29.6 4.5 38 210-248 22-61 (89)
416 PRK05783 hypothetical protein; 47.8 84 0.0018 27.4 6.9 60 99-163 1-67 (84)
417 PF03927 NapD: NapD protein; 46.4 1.1E+02 0.0024 25.9 7.3 67 100-171 3-71 (79)
418 PRK05925 aspartate kinase; Pro 46.2 3.9E+02 0.0086 29.4 13.4 116 110-247 311-429 (440)
419 PF14257 DUF4349: Domain of un 45.7 3.3E+02 0.0071 27.3 12.1 73 97-169 48-123 (262)
420 PRK04998 hypothetical protein; 44.8 1.5E+02 0.0033 25.4 8.1 69 99-167 14-85 (88)
421 PRK14446 acylphosphatase; Prov 44.4 31 0.00067 29.9 3.8 39 210-248 22-62 (88)
422 PRK00227 glnD PII uridylyl-tra 44.0 59 0.0013 37.9 7.0 87 345-436 547-639 (693)
423 PRK05974 phosphoribosylformylg 43.3 71 0.0015 26.9 5.7 54 346-406 2-65 (80)
424 PF02641 DUF190: Uncharacteriz 43.1 26 0.00057 30.6 3.2 43 216-263 53-96 (101)
425 PRK14646 hypothetical protein; 43.1 1.3E+02 0.0028 28.6 8.1 108 112-236 8-137 (155)
426 cd03709 lepA_C lepA_C: This fa 42.3 65 0.0014 26.7 5.3 55 182-248 3-61 (80)
427 cd02393 PNPase_KH Polynucleoti 41.9 65 0.0014 25.6 5.0 37 208-246 23-60 (61)
428 cd02393 PNPase_KH Polynucleoti 41.8 69 0.0015 25.5 5.2 39 441-481 22-61 (61)
429 PRK09436 thrA bifunctional asp 41.6 44 0.00096 39.4 5.7 61 352-418 407-471 (819)
430 PRK00907 hypothetical protein; 40.9 1.8E+02 0.004 25.6 8.1 69 99-167 16-89 (92)
431 TIGR01269 Tyr_3_monoox tyrosin 40.5 1.2E+02 0.0027 33.8 8.4 67 104-170 41-114 (457)
432 PF13399 LytR_C: LytR cell env 39.6 99 0.0022 25.7 6.1 59 346-407 3-65 (90)
433 cd01514 Elongation_Factor_C El 39.4 99 0.0021 25.1 5.9 56 428-483 3-61 (79)
434 PF03462 PCRF: PCRF domain; I 39.3 79 0.0017 28.3 5.7 38 358-395 69-106 (115)
435 PRK14424 acylphosphatase; Prov 37.5 44 0.00096 29.3 3.7 39 210-248 27-67 (94)
436 cd03710 BipA_TypA_C BipA_TypA_ 37.2 67 0.0015 26.5 4.6 54 183-248 4-60 (79)
437 PRK14634 hypothetical protein; 35.9 1.5E+02 0.0032 28.2 7.2 109 111-236 7-137 (155)
438 cd04907 ACT_ThrD-I_2 Second of 35.6 2.7E+02 0.0059 23.5 9.4 73 101-178 2-77 (81)
439 PF03927 NapD: NapD protein; 35.4 1.9E+02 0.0041 24.5 7.1 65 345-416 4-70 (79)
440 COG1534 Predicted RNA-binding 35.3 1.4E+02 0.0031 26.8 6.5 58 395-469 29-88 (97)
441 TIGR00300 conserved hypothetic 35.0 78 0.0017 34.8 5.8 54 355-409 15-71 (407)
442 cd03711 Tet_C Tet_C: C-terminu 34.3 1.3E+02 0.0029 24.5 5.9 56 428-483 3-60 (78)
443 PRK14637 hypothetical protein; 34.3 3E+02 0.0065 26.1 9.0 106 355-469 8-131 (151)
444 PF08753 NikR_C: NikR C termin 34.2 2.8E+02 0.0061 23.2 8.8 70 346-417 3-74 (78)
445 cd03713 EFG_mtEFG_C EFG_mtEFG_ 33.4 1.2E+02 0.0025 24.7 5.4 56 428-483 3-60 (78)
446 KOG0456 Aspartate kinase [Amin 32.6 57 0.0012 36.1 4.4 53 350-408 480-532 (559)
447 PF09186 DUF1949: Domain of un 32.2 1.4E+02 0.003 22.3 5.3 49 434-482 2-51 (56)
448 TIGR00253 RNA_bind_YhbY putati 32.1 1.6E+02 0.0034 26.1 6.3 53 395-464 28-82 (95)
449 PRK14632 hypothetical protein; 31.9 2.3E+02 0.005 27.4 8.0 108 113-235 10-137 (172)
450 PF09377 SBDS_C: SBDS protein 31.5 3.7E+02 0.008 24.6 8.8 100 353-481 20-123 (125)
451 COG1534 Predicted RNA-binding 31.4 1.7E+02 0.0037 26.3 6.4 57 149-235 29-88 (97)
452 PF13399 LytR_C: LytR cell env 30.8 1.5E+02 0.0032 24.7 5.7 58 103-161 4-65 (90)
453 TIGR00302 phosphoribosylformyl 30.5 1.3E+02 0.0028 25.3 5.3 54 102-160 2-65 (80)
454 PRK00092 ribosome maturation p 30.5 2.9E+02 0.0063 25.9 8.2 109 356-469 8-134 (154)
455 COG1993 PII-like signaling pro 30.4 38 0.00083 31.0 2.2 34 449-482 55-89 (109)
456 TIGR01394 TypA_BipA GTP-bindin 30.3 3E+02 0.0065 31.5 9.7 152 130-313 340-514 (594)
457 COG2921 Uncharacterized conser 30.3 3.6E+02 0.0077 24.1 8.0 72 344-415 15-89 (90)
458 cd04097 mtEFG1_C mtEFG1_C: C-t 29.8 1.6E+02 0.0034 24.1 5.7 56 428-483 3-60 (78)
459 cd04096 eEF2_snRNP_like_C eEF2 29.7 1.2E+02 0.0027 24.7 5.0 56 428-483 3-62 (80)
460 KOG2972 Uncharacterized conser 29.7 32 0.00069 35.7 1.8 65 347-417 207-271 (276)
461 cd04098 eEF2_C_snRNP eEF2_C_sn 29.5 1.6E+02 0.0035 24.4 5.7 56 428-483 3-62 (80)
462 smart00838 EFG_C Elongation fa 29.4 1.6E+02 0.0035 24.4 5.7 56 428-483 5-62 (85)
463 PRK00341 hypothetical protein; 29.0 3.2E+02 0.007 23.8 7.7 67 100-167 17-88 (91)
464 PRK08841 aspartate kinase; Val 28.7 1.3E+02 0.0029 32.4 6.3 57 102-164 320-376 (392)
465 PF00679 EFG_C: Elongation fac 27.3 1.3E+02 0.0028 25.2 4.9 55 428-482 6-63 (89)
466 PRK10343 RNA-binding protein Y 27.2 2.3E+02 0.005 25.3 6.5 40 425-464 43-84 (97)
467 PF09377 SBDS_C: SBDS protein 26.7 2E+02 0.0044 26.2 6.3 75 149-247 45-123 (125)
468 PF04359 DUF493: Protein of un 26.7 2.9E+02 0.0062 23.3 6.8 71 99-169 9-84 (85)
469 cd02394 vigilin_like_KH K homo 26.5 1.5E+02 0.0032 22.9 4.7 38 208-246 21-61 (62)
470 PRK14636 hypothetical protein; 26.1 4.4E+02 0.0095 25.7 8.8 106 111-233 5-132 (176)
471 PRK01002 nickel responsive reg 25.7 5.5E+02 0.012 24.0 9.1 68 102-170 59-129 (141)
472 PRK14638 hypothetical protein; 25.3 4.2E+02 0.009 25.1 8.3 103 113-236 10-133 (150)
473 cd08230 glucose_DH Glucose deh 25.1 3.6E+02 0.0078 27.5 8.5 80 390-487 176-266 (355)
474 PF10842 DUF2642: Protein of u 25.0 54 0.0012 27.4 2.1 27 210-236 27-53 (66)
475 COG1993 PII-like signaling pro 24.8 57 0.0012 29.9 2.3 34 215-248 55-89 (109)
476 PRK14631 hypothetical protein; 24.7 6.2E+02 0.013 24.7 9.5 107 113-236 10-156 (174)
477 cd02396 PCBP_like_KH K homolog 23.7 2.8E+02 0.006 21.9 5.9 41 205-246 18-64 (65)
478 PF01709 Transcrip_reg: Transc 23.4 1.4E+02 0.0031 30.1 5.1 60 354-417 172-231 (234)
479 KOG1250 Threonine/serine dehyd 23.3 53 0.0011 36.4 2.1 75 103-179 376-451 (457)
480 COG2102 Predicted ATPases of P 23.2 1.2E+02 0.0027 30.9 4.6 100 386-485 61-174 (223)
481 TIGR00300 conserved hypothetic 22.7 1.9E+02 0.0042 31.9 6.1 54 111-164 15-72 (407)
482 KOG2797 Prephenate dehydratase 22.5 2.4E+02 0.0051 30.6 6.6 39 98-136 279-317 (377)
483 cd02394 vigilin_like_KH K homo 22.5 2E+02 0.0044 22.1 4.8 39 441-480 20-61 (62)
484 PF14257 DUF4349: Domain of un 22.4 7E+02 0.015 25.0 9.8 71 343-415 50-123 (262)
485 cd01514 Elongation_Factor_C El 22.4 1.8E+02 0.0039 23.6 4.7 55 182-248 3-60 (79)
486 KOG2797 Prephenate dehydratase 21.7 1.5E+02 0.0033 32.0 5.0 45 339-383 276-320 (377)
487 TIGR00253 RNA_bind_YhbY putati 21.7 2.5E+02 0.0053 24.9 5.6 22 209-230 61-82 (95)
488 cd03063 TRX_Fd_FDH_beta TRX-li 21.4 84 0.0018 27.6 2.6 33 466-498 13-46 (92)
489 cd03713 EFG_mtEFG_C EFG_mtEFG_ 21.3 1.6E+02 0.0035 23.8 4.2 54 183-248 4-59 (78)
490 PRK09880 L-idonate 5-dehydroge 21.0 4.5E+02 0.0097 26.7 8.2 87 389-486 172-262 (343)
491 PRK14645 hypothetical protein; 20.8 2.7E+02 0.0059 26.6 6.1 113 351-473 5-137 (154)
492 cd03711 Tet_C Tet_C: C-terminu 20.7 2E+02 0.0043 23.5 4.6 54 183-248 4-59 (78)
493 COG3283 TyrR Transcriptional r 20.6 2.4E+02 0.0052 31.5 6.3 72 103-177 3-75 (511)
No 1
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-59 Score=459.60 Aligned_cols=290 Identities=46% Similarity=0.615 Sum_probs=256.8
Q ss_pred eccCCCCCCCcceEEEEEeccccccccccccceeeccCCc--------ccccCccccccccccCCCCCCCCCcccceEEE
Q 047033 31 LKPCSDSLPNLGFSISVSFSPSVSSSLSKSNKIFLHSEPK--------KLAVSARSADENITEGTFTSRSTNRTNVRRHT 102 (514)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 102 (514)
.+.|++++ .++.||+|.| +.|.-+--.+|+..+ ...|.+++|+++|.++||.++.++ .++|+
T Consensus 10 ~rr~~~ss------~~~~~~~sts-~ts~i~yk~~h~~~~rp~~~~~~~p~~~~d~avS~ii~~tP~~~~qr---~krHv 79 (309)
T KOG2663|consen 10 HRRCVASS------CRTMFPASTS-STSAIAYKQMHRHGTRPRLPTLDTPSANADSAVSSIISETPAPSRQR---VKRHV 79 (309)
T ss_pred HHHHHhhc------cceeeeccCc-ccchhhHHHHHhcCCCCCCceecCccccchHHHHHHhhcCCcccccc---cccee
Confidence 34555554 6889999988 666433334664322 235679999999999999998877 49999
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVER 180 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~R 180 (514)
|+|+|+|+|||||||+|+|++||||||||.||.||+++ +||||+.|+|+.++|.++||+||++|++|+||+++++|+|
T Consensus 80 inclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~e~~VeR 159 (309)
T KOG2663|consen 80 INCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTNEPIVER 159 (309)
T ss_pred EEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCCChHHHH
Confidence 99999999999999999999999999999999999997 4899999999999999999999999999999999999999
Q ss_pred heeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccce
Q 047033 181 ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKI 260 (514)
Q Consensus 181 EL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~i 260 (514)
||||+||+ + ++.+.|+| ||+.+.+.++|+|||++ ++...|++|+|-|++|||.
T Consensus 160 ELmlakvs--------l-------------lg~d~Fra--vd~~eh~~t~e~tadsg---al~tnlkkkq~~e~v~tak- 212 (309)
T KOG2663|consen 160 ELMLAKVS--------L-------------LGVDYFRA--VDLHEHTLTIEVTADSG---ALVTNLKKKQIHEIVRTAK- 212 (309)
T ss_pred HHHHHHHH--------h-------------hhHHHHHh--hhhhhhhhhhhhccCch---HHHhhHHHhccchhhccHH-
Confidence 99999996 3 78999999 99999999999999999 7889999999999999999
Q ss_pred eeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCcc
Q 047033 261 ALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTS 340 (514)
Q Consensus 261 Al~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
|+.|.+++..++||+|++++||++.+..+.+.+.... ..+|||||++|..++. | +++++.+
T Consensus 213 allrlk~~~la~i~rlta~f~grvvdis~~s~i~elt---------a~p~rV~~fl~l~dp~---------g-vle~~rS 273 (309)
T KOG2663|consen 213 ALLRLKMGHLAPIWRLTAAFYGRVVDISETSCIVELT---------AKPGRVYPFLPLVDPK---------G-VLEEDRS 273 (309)
T ss_pred HHHHHhhhccchHHHHhhhhccchhccccceeeeeec---------cCCCcccccccccCcc---------c-chhhccc
Confidence 8999999999999999999999999887777755433 5799999999977542 2 6689999
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA 394 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g 394 (514)
|++.||++.++.|-| ++++|+.|.++++|||.+.+|
T Consensus 274 Gl~a~trspl~n~v~------------------e~A~~dae~eei~rIttlpPg 309 (309)
T KOG2663|consen 274 GLRAHTRSPLVNSVP------------------ELAVGDAEIEEISRITTLPPG 309 (309)
T ss_pred chhhcccccccccCh------------------hhccCchhhhhheeccccCCC
Confidence 999999999999998 899999999999999988765
No 2
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=1.6e-53 Score=397.01 Aligned_cols=159 Identities=50% Similarity=0.765 Sum_probs=156.7
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++++|||++++||++.++|++|||+||+||++|.|+++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033 423 FAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG 501 (514)
Q Consensus 423 ~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~ 501 (514)
+|+|||+||||++++++|.+|+++|++|||||||++++++++|+||+++||++|+++|+||||+|++|||++||.||++
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~RTG~~al~r~~~ 159 (161)
T PRK11895 81 HVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVRTGVVAIGRGEK 159 (161)
T ss_pred hhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEccCceeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=7e-54 Score=403.69 Aligned_cols=169 Identities=56% Similarity=0.920 Sum_probs=165.9
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
|+|+|+++++|+||+|+||+++|+||||||+||++++|+++++|||||+++|+++.++||.+||+||+||++|.++++.+
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 58999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCCc
Q 047033 423 FAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESGV 502 (514)
Q Consensus 423 ~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~~ 502 (514)
+|+|||+||||++++++|.||+++|++|||||||++++++++|+||+++|+++|+++|+||||+|++|||++||.||++.
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~RtG~val~r~~~~ 160 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIARTGKIALIRESKV 160 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccccC
Q 047033 503 DSKYLRGYS 511 (514)
Q Consensus 503 ~~~~l~~~~ 511 (514)
..+||+.||
T Consensus 161 ~~~~l~~~~ 169 (174)
T CHL00100 161 NTEYLRYIS 169 (174)
T ss_pred hHHHHHhhh
Confidence 889998886
No 4
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=7.6e-53 Score=390.94 Aligned_cols=157 Identities=48% Similarity=0.757 Sum_probs=154.9
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchh
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPF 423 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~ 423 (514)
+|||+++++|+||+|+||+++|+||||||+|++++++++++++|||++++|+++.++|+.|||+||+||++|.|++++++
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccC
Q 047033 424 AERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 500 (514)
Q Consensus 424 V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~ 500 (514)
|+||||||||++++++|.+|+++|++|||+|||++++++++|+||+++||++|+++|+||||+|++|||++||.||.
T Consensus 81 v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~RtG~va~~r~~ 157 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVARTGKTALSRGP 157 (157)
T ss_pred eeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccCeEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983
No 5
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-53 Score=394.52 Aligned_cols=160 Identities=53% Similarity=0.795 Sum_probs=157.9
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
+|+|+|+++|+|+||||+|++|||+||||||+||+|++||++++|||||++.||+..+|||+|||+||+||++|.|++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033 422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG 501 (514)
Q Consensus 422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~ 501 (514)
++++|||+|+||++++..|.|+.+++++|||+|+|++++++++|+||+++|+++|+++|+||||+|++|||.+||.||.+
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~rtG~~~~~Rg~~ 161 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIARTGVVAMSRGPK 161 (163)
T ss_pred chhheeeEEEEEecCccchHHHHHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEEeccceeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 6
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=100.00 E-value=3.8e-50 Score=374.34 Aligned_cols=157 Identities=54% Similarity=0.803 Sum_probs=152.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
|+|+|+++++|+||+|+||+++|+||||||+||+++++++++ +|||++++|++.++|++|||+||+||++|.++++++
T Consensus 1 m~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred CeEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 579999999999999999999999999999999999998776 499999999999999999999999999999999999
Q ss_pred hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033 177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR 256 (514)
Q Consensus 177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR 256 (514)
.|+|||+|+||++++++|.|+ +++++.|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus 81 ~v~rEl~LiKv~~~~~~r~~i------------~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki~~~~~~l~~~gi~e~~R 148 (161)
T PRK11895 81 HVERELALVKVRASGENRAEI------------LRLADIFRAKIVDVTPESLTIEVTGDSDKIDAFIDLLRPYGIKEIVR 148 (161)
T ss_pred hhheEEEEEEEECCcccHHHH------------HHHHHHhCCEEEEecCCEEEEEEeCCHHHHHHHHHHhhhcCCEEEEc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccceeeecccc
Q 047033 257 TGKIALRREKL 267 (514)
Q Consensus 257 TG~iAl~R~~~ 267 (514)
||.+||.||+.
T Consensus 149 TG~~al~r~~~ 159 (161)
T PRK11895 149 TGVVAIGRGEK 159 (161)
T ss_pred cCceeEEcCCC
Confidence 99999999963
No 7
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=100.00 E-value=9.2e-50 Score=370.33 Aligned_cols=155 Identities=54% Similarity=0.794 Sum_probs=150.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
+|+|+++++|+||+|+||+++|+||||||+||+++++++++ +|||+++++++.++|+.|||+||+||++|.++++++.
T Consensus 1 ~~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 1 RHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred CEEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 59999999999999999999999999999999999998776 4999999999999999999999999999999999999
Q ss_pred HHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeec
Q 047033 178 VERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIART 257 (514)
Q Consensus 178 V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRT 257 (514)
|+|||||+||++++++|.|+ +++++.|||||||++++++++|+||+++||++|+++|+||||+|++||
T Consensus 81 v~rEl~LiKv~~~~~~r~~i------------~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~~~~~~l~~~gi~e~~Rt 148 (157)
T TIGR00119 81 VERELCLVKVSAPGEGRDEI------------IRLTNIFRGRIVDVSPDSYTVEVTGDSDKIDAFLELLRPFGIKEVART 148 (157)
T ss_pred eeeEEEEEEEECCccCHHHH------------HHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcc
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccc
Q 047033 258 GKIALRREK 266 (514)
Q Consensus 258 G~iAl~R~~ 266 (514)
|.+||.||.
T Consensus 149 G~va~~r~~ 157 (157)
T TIGR00119 149 GKTALSRGP 157 (157)
T ss_pred CeEEEecCC
Confidence 999999983
No 8
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-50 Score=373.28 Aligned_cols=159 Identities=51% Similarity=0.767 Sum_probs=154.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
+|+|+++++|+|+||+|+||+|+|+||||||+||+|++||+++ +|||++.||+..+||++|||+||+||++|.+++++
T Consensus 2 ~m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~ 81 (163)
T COG0440 2 PMRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSE 81 (163)
T ss_pred CceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCCc
Confidence 5899999999999999999999999999999999999999986 69999999999999999999999999999999999
Q ss_pred hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEe
Q 047033 176 PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIA 255 (514)
Q Consensus 176 ~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEva 255 (514)
++++|||+|+||++++..|.|+ .+++++|||+|+|++++++++|+||+++|+++|++.|+||||+|++
T Consensus 82 ~~veRel~LiKv~~~~~~R~ei------------~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~~~gi~e~~ 149 (163)
T COG0440 82 PHVERELALIKVSAEGSERGEI------------ARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLRPYGIIEIA 149 (163)
T ss_pred chhheeeEEEEEecCccchHHH------------HHHHHHhCceEEecCcceEEEEEeCChHHHHHHHHHhcccceeEEE
Confidence 9999999999999988889999 9999999999999999999999999999999999999999999999
Q ss_pred eccceeeeccccc
Q 047033 256 RTGKIALRREKLG 268 (514)
Q Consensus 256 RTG~iAl~R~~~~ 268 (514)
|||.+||.||+..
T Consensus 150 rtG~~~~~Rg~~~ 162 (163)
T COG0440 150 RTGVVAMSRGPKK 162 (163)
T ss_pred eccceeecccCCC
Confidence 9999999999763
No 9
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=100.00 E-value=8.4e-50 Score=376.05 Aligned_cols=168 Identities=58% Similarity=0.832 Sum_probs=159.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
|+|+|+++++|+||+|+||+++|+||||||+||++++|++++ +|||++.++++.++|+.+||+||+||++|.++++++
T Consensus 1 m~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~~~ 80 (174)
T CHL00100 1 MKHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITNIP 80 (174)
T ss_pred CeEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCCcc
Confidence 589999999999999999999999999999999999999886 499999999888999999999999999999999999
Q ss_pred hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033 177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR 256 (514)
Q Consensus 177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR 256 (514)
.|+|||||+||++++++|.|+ +++++.|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei------------~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~~l~~~gi~e~~R 148 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEI------------LEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQLLEKFGIIEIAR 148 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHH------------HHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccceeeecccccCCCccccccc
Q 047033 257 TGKIALRREKLGASAPFWRFSA 278 (514)
Q Consensus 257 TG~iAl~R~~~~~~~~~~~~~~ 278 (514)
||.+||+|++.....++-.+|+
T Consensus 149 tG~val~r~~~~~~~~l~~~~~ 170 (174)
T CHL00100 149 TGKIALIRESKVNTEYLRYISE 170 (174)
T ss_pred cCceeEecCccchHHHHHhhhh
Confidence 9999999998776665555443
No 10
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=291.23 Aligned_cols=161 Identities=34% Similarity=0.529 Sum_probs=149.8
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
..++|+|+++|.|+|||||||+|+|+||||||+||.||-||+++++|||||+.|+|+.++|.++||+||++|++|.|+|.
T Consensus 74 r~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVlDyt~ 153 (309)
T KOG2663|consen 74 RVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVLDYTN 153 (309)
T ss_pred cccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheeeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhheeeEEEEEecCc-------------------------------------------------ccHHHHHHHHHhcC
Q 047033 421 LPFAERELMLIKVAVNT-------------------------------------------------TARRDVLDIATIFR 451 (514)
Q Consensus 421 ~~~V~REL~LIKV~~~~-------------------------------------------------~~R~eI~~la~iFr 451 (514)
+++|+|||||+||+.-. .+-..|.++...|.
T Consensus 154 e~~VeRELmlakvsllg~d~Fravd~~eh~~t~e~tadsgal~tnlkkkq~~e~v~takallrlk~~~la~i~rlta~f~ 233 (309)
T KOG2663|consen 154 EPIVERELMLAKVSLLGVDYFRAVDLHEHTLTIEVTADSGALVTNLKKKQIHEIVRTAKALLRLKMGHLAPIWRLTAAFY 233 (309)
T ss_pred ChHHHHHHHHHHHHhhhHHHHHhhhhhhhhhhhhhccCchHHHhhHHHhccchhhccHHHHHHHhhhccchHHHHhhhhc
Confidence 99999999999996421 00112667888999
Q ss_pred cEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccCC
Q 047033 452 AKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRESG 501 (514)
Q Consensus 452 akIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~~ 501 (514)
++++|++++++++|+|..++.+..|+.+++|||++|-.|||..|+.|...
T Consensus 234 grvvdis~~s~i~elta~p~rV~~fl~l~dp~gvle~~rSGl~a~trspl 283 (309)
T KOG2663|consen 234 GRVVDISETSCIVELTAKPGRVYPFLPLVDPKGVLEEDRSGLRAHTRSPL 283 (309)
T ss_pred cchhccccceeeeeeccCCCcccccccccCcccchhhcccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999854
No 11
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.97 E-value=9.2e-32 Score=227.30 Aligned_cols=80 Identities=33% Similarity=0.477 Sum_probs=76.8
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE--ecC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR--DLT 419 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~--dlt 419 (514)
|+||||++|+|+||||+||+|+|+||||||+||+||+||++++||||||++ ||++.++||+|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 589999999999999999999999999999999999999999999999998 99999999999999999999999 777
Q ss_pred Cch
Q 047033 420 HLP 422 (514)
Q Consensus 420 ~~~ 422 (514)
+.+
T Consensus 81 ~~~ 83 (84)
T PRK13562 81 DNE 83 (84)
T ss_pred ccC
Confidence 643
No 12
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.97 E-value=8.9e-32 Score=232.35 Aligned_cols=89 Identities=27% Similarity=0.415 Sum_probs=84.5
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
..+.+||||++|+|+||||+||+|||+||||||+||+||+||++++|||||++. +++.++||+|||+||+||++|.|++
T Consensus 4 ~~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~ 82 (96)
T PRK08178 4 TTHDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQ 82 (96)
T ss_pred CCCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECC
Confidence 346689999999999999999999999999999999999999999999999999 5789999999999999999999999
Q ss_pred CchhhheeeE
Q 047033 420 HLPFAERELM 429 (514)
Q Consensus 420 ~~~~V~REL~ 429 (514)
+++.+++|+.
T Consensus 83 ~~~~v~~e~~ 92 (96)
T PRK08178 83 SDPTMFNKIA 92 (96)
T ss_pred CchhHHHHHH
Confidence 9999999873
No 13
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.97 E-value=2.7e-30 Score=214.86 Aligned_cols=76 Identities=38% Similarity=0.649 Sum_probs=74.5
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
|+|+|+++|+|+||||+||+++|+||||||+||+||+||++++|||||++.|+++.++||+|||+||+||++|.|+
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999985
No 14
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=99.95 E-value=1.1e-28 Score=213.33 Aligned_cols=86 Identities=26% Similarity=0.457 Sum_probs=81.2
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
.+.+|+|+++|+|+||||+||+|+|+||||||+||+||+|++++ +|||++. +++.++|++|||+||+||++|.++++
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~l~~ 83 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRRNQS 83 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEECCC
Confidence 36789999999999999999999999999999999999999986 5999998 57899999999999999999999999
Q ss_pred hhhHHhhee
Q 047033 175 EPQVERELM 183 (514)
Q Consensus 175 ~~~V~REL~ 183 (514)
++.|++|+.
T Consensus 84 ~~~v~~e~~ 92 (96)
T PRK08178 84 DPTMFNKIA 92 (96)
T ss_pred chhHHHHHH
Confidence 999999974
No 15
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.95 E-value=2.4e-28 Score=203.13 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=72.7
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
||+|+|+++|+|+||||+||+|||+||||||+||+||+|+++++||||+++. +++.++||.|||+||+||++|..
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 6899999999999999999999999999999999999999999999999995 89999999999999999999974
No 16
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=99.95 E-value=2.5e-28 Score=206.48 Aligned_cols=77 Identities=31% Similarity=0.490 Sum_probs=73.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEe--ecC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE--DLS 173 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~--dlt 173 (514)
|+|+|+++|+|+||||+||+|+|+||||||+||+||+||+++ +|||+++ ||++.++|++|||+||+||++|. |++
T Consensus 1 mk~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 1 MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred CcEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 479999999999999999999999999999999999999997 5999998 99999999999999999999999 776
Q ss_pred Ch
Q 047033 174 NE 175 (514)
Q Consensus 174 ~~ 175 (514)
+.
T Consensus 81 ~~ 82 (84)
T PRK13562 81 DN 82 (84)
T ss_pred cc
Confidence 64
No 17
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=99.94 E-value=5.6e-27 Score=195.03 Aligned_cols=74 Identities=34% Similarity=0.570 Sum_probs=71.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
|+|+|+++|+|+||||+||+|+|+||||||+||+||+||+++ +|||++.|+++.++|++|||+||+||++|.++
T Consensus 1 m~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~~ 76 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNKL 76 (76)
T ss_pred CeEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEeC
Confidence 579999999999999999999999999999999999999987 59999999999999999999999999999985
No 18
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.92 E-value=1.9e-25 Score=184.57 Aligned_cols=75 Identities=53% Similarity=0.824 Sum_probs=70.8
Q ss_pred heeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeecc
Q 047033 425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRE 499 (514)
Q Consensus 425 ~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg 499 (514)
+||||||||+++.++|.+|+++|+.|+|+|||++++++++|+||+++|||+|+++|+||||+|++|||++||.||
T Consensus 1 erEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG~vAi~Rg 75 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTGRVAIERG 75 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEEEEEEEST
T ss_pred CeEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEcccceeEeCC
Confidence 699999999998899999999999999999999999999999999999999999999999999999999999997
No 19
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=183.83 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=69.1
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
||+|+|+++|+|+||||+||+|+|+||||||+||++|+|++++ +|||++ ++++.++||.|||+||+||++|+.
T Consensus 1 mm~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 1 MMQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-ASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-CCCchHHHHHHHHhcCcCeEEEEE
Confidence 5789999999999999999999999999999999999999986 599999 589999999999999999999974
No 20
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=99.90 E-value=1.7e-24 Score=178.94 Aligned_cols=75 Identities=56% Similarity=0.798 Sum_probs=70.4
Q ss_pred HhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeecc
Q 047033 179 ERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTG 258 (514)
Q Consensus 179 ~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG 258 (514)
+|||||+||++++++|.+| +++++.|+|+|||++++++++|+||+++|||+|++.|+||||+|++|||
T Consensus 1 erEl~LiKV~~~~~~r~ei------------~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~~gi~Ei~RtG 68 (75)
T PF10369_consen 1 ERELALIKVKATPENRSEI------------LQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKPFGILEIARTG 68 (75)
T ss_dssp EEEEEEEEEE-SCHHHHHH------------HHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTGGGEEEEEEEE
T ss_pred CeEEEEEEEECCccCHHHH------------HHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccc
Confidence 6999999999988999999 9999999999999999999999999999999999999999999999999
Q ss_pred ceeeecc
Q 047033 259 KIALRRE 265 (514)
Q Consensus 259 ~iAl~R~ 265 (514)
.+||.||
T Consensus 69 ~vAi~Rg 75 (75)
T PF10369_consen 69 RVAIERG 75 (75)
T ss_dssp EEEEEST
T ss_pred ceeEeCC
Confidence 9999997
No 21
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.88 E-value=8.8e-23 Score=163.33 Aligned_cols=63 Identities=57% Similarity=0.900 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV 415 (514)
|+||+|+||+++|+||||||+||+|+++++++++||||++.|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999999999999999999999999999999999987
No 22
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=99.82 E-value=2.1e-20 Score=149.61 Aligned_cols=61 Identities=52% Similarity=0.931 Sum_probs=56.0
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV 169 (514)
|+||+|+||+|+|+||||||+||+|+++++++. |||+++|+++.++||++||+||+||++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 899999999999999999999999999999975 9999999999999999999999999987
No 23
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.99 E-value=1.2e-09 Score=92.46 Aligned_cols=76 Identities=26% Similarity=0.322 Sum_probs=72.2
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
||.|.+.+.+..+||.|.||.++-++|||-+.+++.....+.+.-.|.++|++ ++.++.|..||+||.||..|+-.
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~ 76 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEIT 76 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEe
Confidence 78999999999999999999999999999999999999999999999999995 68999999999999999998754
No 24
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.81 E-value=4e-08 Score=75.69 Aligned_cols=71 Identities=55% Similarity=0.911 Sum_probs=63.6
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV 415 (514)
|+|.+.+.|+||+|.+|+.+|+..|+||.++...+....+..++.+.+......+++++++|+++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 79999999999999999999999999999999876535677888888875448899999999999999987
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.80 E-value=1.8e-08 Score=77.51 Aligned_cols=66 Identities=27% Similarity=0.459 Sum_probs=58.7
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCcc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLID 411 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLid 411 (514)
|+|.+.+.|+||+|.+|+++|+++|+||.++....+.+. ...+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 789999999999999999999999999999999998876 556666666788999999999998754
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.73 E-value=5.7e-08 Score=74.75 Aligned_cols=65 Identities=26% Similarity=0.492 Sum_probs=56.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhcCcc
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQKLVN 165 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeKLvd 165 (514)
|+|.+.+.|+||+|.+|+++|+++|+||.++......+. ..+.++...+....+++.+.|+++.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 689999999999999999999999999999999998874 34556666778889999999988753
No 27
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=98.66 E-value=6.9e-08 Score=81.90 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=68.3
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
||+|.+.+.+..+||.|.||.++-++|||-+-+++.....|.+. +.++|++ ++.++-+..||+||.||..|+-.-
T Consensus 1 m~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R~~~lL~~QLeKl~Dv~~V~i~~ 77 (86)
T COG3978 1 MMQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DRSVDLLTSQLEKLYDVAHVEITQ 77 (86)
T ss_pred CceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CCChHHHHHHHHHHccceeEEEee
Confidence 78999999999999999999999999999999999998888776 7788877 558999999999999999998653
No 28
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.62 E-value=4.7e-07 Score=73.95 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=63.4
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~ 416 (514)
.-+|.|.+.|+||+|+.|+.+++.-|.||.++++....+.+..++++.+. .+-+.+++++++|+++-+|.+|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 57899999999999999999999999999999999986677888888876 58889999999999999999986
No 29
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.61 E-value=1.9e-07 Score=71.46 Aligned_cols=71 Identities=25% Similarity=0.437 Sum_probs=63.0
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
+|.+.+.|+||+|++|+.+|+.+|+||.++.+...+..+...+++.++.. ..++++++|+++.+|.+|..+
T Consensus 1 ~l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 36789999999999999999999999999999877656888999998653 588999999999999999764
No 30
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.59 E-value=1.3e-07 Score=100.19 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=67.2
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
+.+|+|++.++|+||||++|+++|+++|+||+|+...+++. +.++++++++ .++..++++++||+||.+|.+.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~-~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGG-EGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCC-CceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 45799999999999999999999999999999999988755 8899999998 8899999999999999998654
No 31
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.55 E-value=5.1e-07 Score=69.53 Aligned_cols=69 Identities=59% Similarity=0.946 Sum_probs=58.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVikV 169 (514)
|+|.+.+.|+||+|.+++.+|+..|+||+++........ ..+.+.+......+++++++|.++-+|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 789999999999999999999999999999998764222 346666653338899999999999999987
No 32
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.51 E-value=4.8e-07 Score=70.86 Aligned_cols=71 Identities=24% Similarity=0.411 Sum_probs=62.4
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
|.|.+.+.|+||+|++++.+|+..|.||+++...+..+.+..++++++. -+...+++++++|+++.+|.++
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 5789999999999999999999999999999886655558888888876 5788899999999999888765
No 33
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.48 E-value=6.3e-07 Score=68.99 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=62.6
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
||.+.+.|+||+|.+++.+|+..|.||.++.+.+....+...+.+.+++. .+++++++|+++-+|.+|..+
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 57899999999999999999999999999998775556778888888865 788999999999999998753
No 34
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.43 E-value=1.2e-06 Score=69.42 Aligned_cols=46 Identities=20% Similarity=0.514 Sum_probs=40.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEE
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVV 146 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv 146 (514)
+.|++.++|+||+|++|+.+|+++|+||+++.+.++++++.+.+.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE
Confidence 3678899999999999999999999999999998887765566655
No 35
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.40 E-value=8.4e-07 Score=94.21 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=65.2
Q ss_pred ccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 96 TNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 96 ~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
....+|.|++.++|+||||++|+++|+++|+||+|+...++++ .+.++|+++ .++..++++++||+||.+|.+.
T Consensus 344 ~~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 344 EIESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred HhceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 3456899999999999999999999999999999999987654 346888887 7899999999999999998664
No 36
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1.7e-06 Score=68.62 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=38.9
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRIT 389 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiT 389 (514)
+.|++.++|+||+|++|+.+|+++|+||+++.+.+.++..+.|+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE
Confidence 468889999999999999999999999999999888775554543
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.36 E-value=4.5e-06 Score=68.17 Aligned_cols=72 Identities=28% Similarity=0.408 Sum_probs=58.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~ 170 (514)
-...|.+...|+||+|+.|+.+++.-|.||.++.+.... +. ..+++.+. .+.+.+++++++|+++-+|.+|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 456899999999999999999999999999999999875 32 34555544 56789999999999999999986
No 38
>PRK08577 hypothetical protein; Provisional
Probab=98.33 E-value=4.6e-06 Score=75.61 Aligned_cols=76 Identities=26% Similarity=0.426 Sum_probs=66.4
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEec
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dl 418 (514)
..++|.+.+.|+||+|+.|+++|+..|+||.++.+......+..++++++. ..+..++++.++|+++-+|.+|...
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 368999999999999999999999999999999988776677787877766 3346899999999999999999753
No 39
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.32 E-value=2.5e-06 Score=65.26 Aligned_cols=68 Identities=24% Similarity=0.459 Sum_probs=58.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+.+.+.|+||+|++++.+|+.+|+||.++.+...+ +...+++.++.. .+++++++|+++-+|.+|..+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~--~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP--VPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 67899999999999999999999999999998765 334477777443 588999999999999999764
No 40
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=7e-06 Score=63.50 Aligned_cols=70 Identities=34% Similarity=0.420 Sum_probs=61.6
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
.|.+.+.|+||+|++++.+|+..|+||.++...+. +.+..++++.+++. +.++.+.++|++.-+|.+|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 46789999999999999999999999999988654 35778899999876 788999999999999998864
No 41
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=8.5e-06 Score=64.93 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=59.7
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CCh-HHHHHHHHHHhcCccEEEEEec
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATD-ESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde-~~ieQI~kQL~KLidVikV~dl 418 (514)
+|.+.+.|+||+|++|++.+++.|.||..++... ...+..++.+++. .+. ..+++++++|+++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5889999999999999999999999999998743 2245666776665 344 4899999999999999999753
No 42
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=4e-06 Score=65.64 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=58.5
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC--CcEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD--KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted--~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~ 170 (514)
|.|.+.+.|+||+|++++.+|++.|.||+++...+..+ ...+.+++. .+...+++++++|+++-+|.++.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~ 73 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVP 73 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCc
Confidence 57899999999999999999999999999998865543 234666655 57888999999999998887653
No 43
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=4.1e-06 Score=64.44 Aligned_cols=69 Identities=29% Similarity=0.427 Sum_probs=57.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+|.+.+.|+||+|.+++.+|+..|+||.++.+.+.. +.+.+.|.+++. .+++++++|+++-.|.+|..|
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~--~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP--IDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC--CCHHHHHHHHcCCCceEEEEC
Confidence 478899999999999999999999999999987643 234466666655 788999999999999998754
No 44
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.21 E-value=2.7e-06 Score=66.58 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=57.1
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
+-+..+|+||+|++|+.++++.|+||.++....+. +...+.+.++.. .+++++++|.++.+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~--~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG--EIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC--CEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876543 566666666654 888999999999999999754
No 45
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.18 E-value=5.5e-06 Score=65.25 Aligned_cols=71 Identities=23% Similarity=0.368 Sum_probs=60.8
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
+.+.+.|+||+|++|+.+|+++|.||.++.+.+.+..+.+.+.+.++++ ....+.+.|.++.+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~--~~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP--VPDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC--CCHHHHHHHHcCCCccEEEEEe
Confidence 4568999999999999999999999999998887677788888888863 3468889999999999887653
No 46
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.14 E-value=2.9e-06 Score=66.45 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=56.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+-+...|+||+|++|+.++++.|+||.++....+...+.+.+.++.. .+++++++|.++-+|++|..+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~--~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE--VSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC--CCHHHHHHHHcCCCeEEEEEC
Confidence 45688999999999999999999999999876554444566666554 788999999999999998753
No 47
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=2e-05 Score=62.83 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=60.0
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEE
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVik 414 (514)
+|.+.+.|+||.|++|+.+++.-|.||.++..... ..+...+.+++. .+.+.++++++.|+++-+|.-
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~ 69 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKV 69 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEE
Confidence 47899999999999999999999999999998654 367888888887 578899999999999999874
No 48
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=2.1e-05 Score=60.81 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=58.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
.|.+.+.|+||+|++++.+|++.|+||.++...... +...+++.+++. +.++.++++|++.-+|.+|.-
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV-GDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc-ccHHHHHHHHhCCCCeEEEEe
Confidence 467889999999999999999999999999876543 334577778776 688899999999999998864
No 49
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=98.10 E-value=2.7e-05 Score=63.18 Aligned_cols=70 Identities=13% Similarity=0.278 Sum_probs=60.4
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
.|.|...|++|+|+.|+.+++..|+||.++.+... +.-++++.+. +-+.+++++++|+++..|.+|.-+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 58899999999999999999999999999999653 4455666666 6678999999999999999998654
No 50
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=2.2e-05 Score=62.53 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=56.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEE--EEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALF--TIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~--TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
.|.+...|+||+|++|+.++++.|.||+.++.....+ ...+ |+.+...+..+++++++|.++-+|.+|+-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5789999999999999999999999999998743221 1234 444444445999999999999999999753
No 51
>PRK08577 hypothetical protein; Provisional
Probab=98.06 E-value=2.9e-05 Score=70.41 Aligned_cols=74 Identities=28% Similarity=0.363 Sum_probs=61.8
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEe--cChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+.+.|.+.+.|+||+|+.|+.+|+..|+||.++.+......+ .++++++ ..+..+++++++|+++-+|.+|...
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~ 132 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIR 132 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEE
Confidence 588999999999999999999999999999999987654333 4555544 4346899999999999999999753
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.06 E-value=4.5e-05 Score=56.37 Aligned_cols=69 Identities=26% Similarity=0.428 Sum_probs=59.1
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEE
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~ 416 (514)
|.+.+.|+||.+++++.+|+..++||.++...... .+...+.+.+. .+...++.+.++|.++..|.+|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 46677777765 46778999999999999998875
No 53
>PRK00194 hypothetical protein; Validated
Probab=98.06 E-value=4.6e-06 Score=69.64 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=55.5
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEEE
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT--DESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV~ 416 (514)
|++|++++.-.|+||++++|+++|+.+|.||..+..... .+.--+.++++.+ +..++.+.+.|+++-+...+.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 568999999999999999999999999999999987764 3444454455443 234677777777776665544
No 54
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.00 E-value=1.7e-05 Score=62.37 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=55.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
+.+.+.|+||++++|+++|+++|.||.++.+.+++..+ .+.+.++++. ...+.+.|.++-+|++|..+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~~~~ 72 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAKVVE 72 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEEEEe
Confidence 45689999999999999999999999999987764333 4666666633 458888888889998887653
No 55
>PRK00194 hypothetical protein; Validated
Probab=97.99 E-value=1e-05 Score=67.52 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=56.2
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEe
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~ 170 (514)
|+++++++.-.|+||++++|+++|+.+|.||..+......+.-.++++++... ..++.+.+.|+++-+...+.
T Consensus 1 ~~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 1 MMKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred CceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 45899999999999999999999999999999998775332223555666432 34678888888777766554
No 56
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.99 E-value=1.7e-05 Score=60.59 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=39.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG 148 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g 148 (514)
|++.+.|+||.|.|++.+|+++|+||+++.+.+++ +.+.+.+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46789999999999999999999999999999887 44567777755
No 57
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=3.7e-05 Score=60.82 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=52.1
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
.+++.+.|+||.|.+++.+|+++|+||+++...+....+...+.+.+++++. +++.+.|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~--~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNP--RPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCH--HHHHHHHHHC
Confidence 5788999999999999999999999999999888767788889999986443 4666666653
No 58
>PRK04435 hypothetical protein; Provisional
Probab=97.93 E-value=0.0001 Score=68.40 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=63.9
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEecC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
+.-+|.+.+.|+||+|++|..++++.|.||.+++... ...+...++++++ +.+..+++|+.+|+++-.|.+|+-+.
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4679999999999999999999999999999998753 2346677777776 33458999999999999999998654
No 59
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.92 E-value=2.9e-05 Score=59.28 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=39.7
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA 394 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g 394 (514)
|++.+.|+||+|.|++.+|+++|+||+++.+.+++ .+..-+.+.++.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 46889999999999999999999999999999986 455556666653
No 60
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.90 E-value=9e-05 Score=60.11 Aligned_cols=70 Identities=10% Similarity=0.285 Sum_probs=57.6
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
.|.+...|++|+|+.|+.+++..|+||.++.+... ..-.+++.+. +...+++++++|.++-.|.+|..+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~-~~~~L~~li~~L~~i~gV~~V~R~~ 71 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI-EFEKLQTLMPEIRRIDGVEDVKTVP 71 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec-CHHHHHHHHHHHhCCCCceEEEEee
Confidence 57899999999999999999999999999998653 2212444443 5677999999999999999998653
No 61
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.89 E-value=8.6e-05 Score=60.04 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=56.7
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEE
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLH 413 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVi 413 (514)
++.+.+.|+||.|++|..+|+++|.||.+|..-|... ++-..+.|-+.| ++..++++++.|.+..+-+
T Consensus 1 sl~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~ 71 (75)
T cd04880 1 SLVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV 71 (75)
T ss_pred CEEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence 3567789999999999999999999999998888765 566677777888 5788999999999865533
No 62
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.89 E-value=7.1e-05 Score=52.37 Aligned_cols=59 Identities=32% Similarity=0.452 Sum_probs=50.3
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL 406 (514)
|++...|+||++.++++.|+++|+||.++........+..++++.+...+ .++.++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46788999999999999999999999999998776667788888888654 777777776
No 63
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=6.4e-05 Score=57.93 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=52.5
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEeCCh-HHHHHHHHHHhcC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVPATD-ESISKLMQQLYKL 409 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~gde-~~ieQI~kQL~KL 409 (514)
|.+.+.|+||.|.+|+.+++..|.||.++...+.. ..+...+.+.+...+ +.++++++.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 35788999999999999999999999999987754 357777888777544 7789999998774
No 64
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.84 E-value=0.00013 Score=53.79 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=56.1
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~ 170 (514)
|.+.+.|+||.+++++.+|+..++||.++...... +...+.+.+. .+...++.++++|.++-.|.+|+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 46789999999999999999999999999987654 2234566555 45678999999999999998875
No 65
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.84 E-value=0.00015 Score=59.54 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=53.8
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC--hHHHHHHHHHHhcCcc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT--DESISKLMQQLYKLID 411 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd--e~~ieQI~kQL~KLid 411 (514)
.+|.+.+.|+||.|.+|..+|+++|+||.++..-|..+ .....+-+-++|. +..++++.++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 46788889999999999999999999999999888754 3444444555665 7788999999988544
No 66
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=0.00017 Score=57.49 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=56.2
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
+|.+.+.|+||.|++|+.+++..|.||.++......+. ..+.+++. .+.+.++++++.|+++-+|.--
T Consensus 1 ~l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 1 TLRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred CEEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 47899999999999999999999999999998765422 23666665 5678899999999999998753
No 67
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.82 E-value=5.8e-05 Score=61.23 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=50.0
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC----CCCeeEEEEEEeCChH-HHHHHHHHHhcC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE----TEGLSRITTVVPATDE-SISKLMQQLYKL 409 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te----~~~iSRiTIVV~gde~-~ieQI~kQL~KL 409 (514)
+++...|+||++++|+.+|+++|.||.++.....+ ..+.-.|++.+...+. .+.++.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999986555 3366667777765433 577777777665
No 68
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=9e-05 Score=58.49 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=48.4
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
|.+++.+.|+||.|.+++++|+..|+||.++...+.....-..+.++++.+ ...+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~-~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ-EDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH-HHHHHHHHHHHH
Confidence 689999999999999999999999999999987775322233456677643 366677776654
No 69
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.77 E-value=0.00015 Score=58.15 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=50.2
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEE
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPA-TDESISKLMQQLYKLIDLH 413 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVi 413 (514)
+++.+.|+||.|.+++.++++.|.||.|+...+.. +.+...+.+.+.+ ++..+++|.+.|.+-.+|.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~~ 70 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTVV 70 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccEE
Confidence 68899999999999999999999999999887752 3344444444432 3335888988887764443
No 70
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.74 E-value=3e-05 Score=64.83 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=54.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhcCccEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~KLidVik 414 (514)
|+.+++...|+||++++|+++|+.+|.||..+..... .+.-.|.+++.+.. ..++++.+.|++|-+-..
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELG 71 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999987763 34555666666443 458888888887765443
No 71
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.73 E-value=0.00013 Score=57.63 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=49.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhc
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
|.+++.+.|+||.|.+++++|++.|+||+++...... ..+.+.++++.++ ..+++.+-|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE-DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH-HHHHHHHHHHH
Confidence 6789999999999999999999999999999877753 2456777777443 56677776654
No 72
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.73 E-value=0.00022 Score=58.50 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=52.1
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEE--EEEecC--hHHHHHHHHHHhcCcc
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFT--IVVYGT--DKVLQQVMEQLQKLVN 165 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~T--IVv~gd--e~~ieQI~kQLeKLvd 165 (514)
..+.+.+.|+||.|.++..+|++.|+||.|+..-|..+. ..++ +-+++. +..++++.++|++..+
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~ 71 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 367788899999999999999999999999998887653 3344 445554 6788899999988544
No 73
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=5.3e-05 Score=63.39 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=54.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEe
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~ 170 (514)
++.+++.-.|+||++++|+++|+++|.||..+........-.|+++++... ..++++.+.|+++-+-..++
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 478999999999999999999999999999998776322112666776543 45888888888877654443
No 74
>PRK07431 aspartate kinase; Provisional
Probab=97.70 E-value=0.011 Score=65.37 Aligned_cols=291 Identities=14% Similarity=0.124 Sum_probs=174.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeE
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLI 185 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~Li 185 (514)
+.+++|+++||.+.|.+.|+||+.++.+..+.. .-+.++++.++ +++..+.|+++.+=+.. .+-.+.+++++|
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d--~~~~~~~l~~l~~~~~~----~~i~~~~~~a~I 351 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENE--LKKAEAVAEAIAPALGG----AEVLVETNVAKL 351 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHH--HHHHHHHHHHHHHHcCC----CcEEEeCCeEEE
Confidence 567899999999999999999999987765432 33666665432 44444444443210000 122345678899
Q ss_pred EEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeec
Q 047033 186 KVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRR 264 (514)
Q Consensus 186 KV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~R 264 (514)
.|--.. ..+..+. -.++......+-+|.-++....-|-+.=+.+..+..++.|..--.+|.
T Consensus 352 svvG~gm~~~~gi~--------~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~---------- 413 (587)
T PRK07431 352 SISGAGMMGRPGIA--------AKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELED---------- 413 (587)
T ss_pred EEECCCcccCccHH--------HHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCC----------
Confidence 886543 2333330 123666677777888777665566665566667777777654222221
Q ss_pred ccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCccccee
Q 047033 265 EKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRS 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 344 (514)
.......-.|+. .+.-|-.+.-.+ .+..
T Consensus 414 ~~~~~~~~~~~~-------------------------------~~~~v~gIa~~~---------------------~~~~ 441 (587)
T PRK07431 414 SQIEINPTASGQ-------------------------------DEPEVRGVALDR---------------------NQAQ 441 (587)
T ss_pred cccccCccccCC-------------------------------CCCcEEEEEccC---------------------CEEE
Confidence 001011111110 111122222112 1112
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeec-CCCCeeEEEEEEeCC-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHA-ETEGLSRITTVVPAT-DESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~T-e~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
-++. .+.|+||.++++.+.+.++|.||+.++.... +..+.-.++++++-+ -..+.++.++|.+..+..++
T Consensus 442 i~l~-~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~~~~~~~~i------- 513 (587)
T PRK07431 442 LAIR-NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEV------- 513 (587)
T ss_pred EEEC-CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHHHhcCCceE-------
Confidence 2332 4568899999999999999999999987543 333566788888743 23456666666654443322
Q ss_pred hhheeeEEEEEecCcc-c----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 423 FAERELMLIKVAVNTT-A----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 423 ~V~REL~LIKV~~~~~-~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+++.+++|.|--..- + -..+++.....+.++.-++...+.+-+.=+.+..+..++.|.
T Consensus 514 ~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~S~~~Is~vV~~~~~~~av~~Lh 577 (587)
T PRK07431 514 EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVH 577 (587)
T ss_pred EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeeccceEEEEEEeHHHHHHHHHHHH
Confidence 2456788888754321 2 347888888889999999988777777767666666666654
No 75
>PRK04435 hypothetical protein; Provisional
Probab=97.69 E-value=0.00024 Score=65.95 Aligned_cols=76 Identities=26% Similarity=0.363 Sum_probs=61.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
-+.-+|.+.+.|+||+|++|..++++.|.||.+++.....+. ..+++++. ..+..+++++.+|+++-.|.+|+-+.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 477899999999999999999999999999999987533222 33555544 44458999999999999999998653
No 76
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.64 E-value=0.00031 Score=56.78 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=52.9
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcE--EEEEEec--ChHHHHHHHHHHhcCccee
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KAL--FTIVVYG--TDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~--~TIVv~g--de~~ieQI~kQLeKLvdVi 167 (514)
+.+.+.|+||.|++|..+|+++|+||.+|.--|... ++. +-|-+.| ++..++++.+.|++..+-+
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~~~~~ 71 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVTEDV 71 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCee
Confidence 567789999999999999999999999998777665 343 5566667 5788999999999865533
No 77
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00017 Score=55.44 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=41.8
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA 394 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g 394 (514)
+.+.+.|+||.|++++++|++.|+||.++...+....+..++++.+++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 678999999999999999999999999998866655677778888875
No 78
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00022 Score=56.39 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=46.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKL 163 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKL 163 (514)
.+.+.+.|+||.|.+++.+|++.|+||+++...+....+ .+.|.+++++ .+++.+.|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~--~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN--PRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC--HHHHHHHHHHC
Confidence 578899999999999999999999999999887764443 3667776544 23666666553
No 79
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.57 E-value=0.00021 Score=57.95 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=47.5
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC----CcE--EEEEEecCh-HHHHHHHHHHhcCc
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD----KAL--FTIVVYGTD-KVLQQVMEQLQKLV 164 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted----~~~--~TIVv~gde-~~ieQI~kQLeKLv 164 (514)
+++...|+||++++|+.+|+++|.||.++.....+. .++ |++.++..+ ..+.++.+.|+++-
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999999999999865542 233 566666443 34677777776553
No 80
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.57 E-value=0.00039 Score=55.77 Aligned_cols=64 Identities=14% Similarity=0.206 Sum_probs=47.8
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CC--cEEEEEEe-cChHHHHHHHHHHhcCcce
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DK--ALFTIVVY-GTDKVLQQVMEQLQKLVNV 166 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~--~~~TIVv~-gde~~ieQI~kQLeKLvdV 166 (514)
+++.+.|+||.|.+++.++++.|.||.|+...+.. +. ..+.+.+. .++..++.|.+.|++-.+|
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCcccE
Confidence 68899999999999999999999999999887752 22 23333333 2333488888888776444
No 81
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.53 E-value=0.00028 Score=64.60 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=81.5
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
|+-..||+++||+||-|..++..+..-|+||..++.+.|.|.|++..+|+..+.. .++ |+.-=-|+++.
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A-~~~---Lee~gF~Vr~~------- 69 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEA-HSV---LEEAGFTVRET------- 69 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHH-HHH---HHHCCcEEEee-------
Confidence 3456899999999999999999999999999999999999999999999865543 333 22222222222
Q ss_pred HHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeC--------ChhHHHHHHHHhccC
Q 047033 178 VERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTG--------DPGKMVAVQRNLSKF 249 (514)
Q Consensus 178 V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG--------~~~kIdafi~~L~~f 249 (514)
-.+-|..+. .-.-+ ..+++.++.- |++-+|+.-=++- ..+.+|+.++.|++-
T Consensus 70 -----dVlaVEmeD-~PG~l------------~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 70 -----DVLAVEMED-VPGGL------------SRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred -----eEEEEEecC-CCCcH------------HHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence 222222221 11122 4556665543 3344443332222 246789999999999
Q ss_pred CcE
Q 047033 250 GIR 252 (514)
Q Consensus 250 GIl 252 (514)
||.
T Consensus 130 gi~ 132 (142)
T COG4747 130 GIK 132 (142)
T ss_pred CCe
Confidence 985
No 82
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00039 Score=53.52 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=47.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC---Cc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD---KA--LFTIVVYG-TDKVLQQVMEQLQKL 163 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted---~~--~~TIVv~g-de~~ieQI~kQLeKL 163 (514)
+.+.+.|+||.|.+|+.+++..|.||.++...+..+ .+ .+.+.+.. +.+.++++++.|++.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 357889999999999999999999999999876532 23 35555553 447788999998764
No 83
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.48 E-value=0.00068 Score=55.65 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=52.8
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL 163 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL 163 (514)
...|+++=.|+||+++++++.+++.|.||..+......+.-.+.+.+++++...+++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 4689999999999999999999999999999998887654446777888888899999999876
No 84
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.48 E-value=0.00029 Score=56.89 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=49.5
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhcC
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYKL 409 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~KL 409 (514)
+|++...|+||++++|++.|+.+|.||..+........+.-.|.+.+..+. ..++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999877544445555555555553 2578888777665
No 85
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.46 E-value=0.00067 Score=77.01 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=73.5
Q ss_pred cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033 324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL 402 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI 402 (514)
.++++.+|+. +..+.-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++.. .+.+...|.+.+. .+-+.+++|
T Consensus 610 er~i~v~W~~----~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i 684 (702)
T PRK11092 610 EKFMAVEWDK----ETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANI 684 (702)
T ss_pred ceeEEeEECC----CCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 112223559999999999999999999999999999999754 4456777776666 578899999
Q ss_pred HHHHhcCccEEEEEec
Q 047033 403 MQQLYKLIDLHEVRDL 418 (514)
Q Consensus 403 ~kQL~KLidVikV~dl 418 (514)
+++|.++-+|.+|...
T Consensus 685 ~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 685 MRKIRVMPDVIKVTRN 700 (702)
T ss_pred HHHHhCCCCcceEEEc
Confidence 9999999999999764
No 86
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.42 E-value=0.00077 Score=47.04 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=45.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHH
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQL 160 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQL 160 (514)
|++...|+||.+.++++.|+++|+||.++........+ .+++.+...+ .+++++++|
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG-DLEKLLEAL 59 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechH-HHHHHHHHh
Confidence 46788999999999999999999999999987765343 4666666544 677777765
No 87
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.00051 Score=52.82 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=41.6
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHh
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLe 161 (514)
+.+.+.|+||.|.+++++|++.|+||.++...+....+ .+.+.++. .+++.+-|+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~----~~~~~~~L~ 58 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED----IEKAIEVLQ 58 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC----HHHHHHHHH
Confidence 67899999999999999999999999999886665333 35555654 344444443
No 88
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.37 E-value=0.0012 Score=53.45 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=47.5
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhc
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYK 408 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~K 408 (514)
.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+..+--.-.+.+. +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999887755544443333332 34456667777654
No 89
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.00049 Score=55.62 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=47.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChH--HHHHHHHHHhcC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDK--VLQQVMEQLQKL 163 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~--~ieQI~kQLeKL 163 (514)
+|++.-.|+||++++|++.|+.+|+||..+........+. |.+.+..+.. .++++.+.|+++
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999998775334444 4555555532 578888777765
No 90
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.00044 Score=56.30 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=50.0
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH-HHHHHHHHHhcCc
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE-SISKLMQQLYKLI 410 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~-~ieQI~kQL~KLi 410 (514)
+++.-.|+||++++|+++|+.+|.||..+...... +.-.|.+.+.+.+. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68889999999999999999999999999755443 45667777776554 6888888887764
No 91
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.33 E-value=0.0016 Score=50.59 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=45.2
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh------HHHHHHHHHH
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD------ESISKLMQQL 406 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde------~~ieQI~kQL 406 (514)
.|.|.+.|+||+|++++++|+..|.||.++.+....+ ....++.+.+.+ +..+++.+-|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~~~l 66 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE--RALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999877654 455666665443 4455554444
No 92
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.33 E-value=0.0013 Score=51.08 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=39.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD 150 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde 150 (514)
.|.+.+.|+||+|++++++|+..|+||.++.+...++....++.+.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 5789999999999999999999999999999887765334555555433
No 93
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.32 E-value=0.003 Score=61.31 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=91.2
Q ss_pred hHHHHHHhcCCEEEEecCC------EEEEEEeCChhHHHHHHHHhccCCcE-EEeeccceeeecccccCCCccccccccC
Q 047033 208 QIRWLVDIFRAKIVDISEY------SLTIEVTGDPGKMVAVQRNLSKFGIR-EIARTGKIALRREKLGASAPFWRFSAAS 280 (514)
Q Consensus 208 ~i~~l~~~F~akVVDvs~~------s~~iEvTG~~~kIdafi~~L~~fGIl-EvaRTG~iAl~R~~~~~~~~~~~~~~~~ 280 (514)
+|.++.-..++.|+|.+-. .+++-++|.+..+..+...|..++-. .+. +.+.|..... +
T Consensus 24 ~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~----i~v~~~~~~~-~--------- 89 (190)
T PRK11589 24 TITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLL----IVMKRTTARP-R--------- 89 (190)
T ss_pred HHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeE----EEEEeccccc-c---------
Confidence 4588888999999999855 78889999999999998888776521 110 1122211000 0
Q ss_pred CCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCcccccCCCcccceeEEEEEEEeCcchHHHH
Q 047033 281 YPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNI 360 (514)
Q Consensus 281 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~R 360 (514)
.. .+ ..|.+++.-.|+||++.+
T Consensus 90 -------------------------------------~~------------------~~---~~~~v~v~G~DrPGIV~~ 111 (190)
T PRK11589 90 -------------------------------------PA------------------MP---ATVWVQVEVADSPHLIER 111 (190)
T ss_pred -------------------------------------cc------------------CC---ceEEEEEEECCCCCHHHH
Confidence 00 00 048899999999999999
Q ss_pred HHHHhhccCceeeeEeeeecC----CCCeeEEEEEEeC-ChHHHHHHHHHHhcCcc
Q 047033 361 VTGVFARRGYNIQSLAVGHAE----TEGLSRITTVVPA-TDESISKLMQQLYKLID 411 (514)
Q Consensus 361 ItgLFsRRGyNIeSLtVg~Te----~~~iSRiTIVV~g-de~~ieQI~kQL~KLid 411 (514)
||.+|+.||+||++|...... .+.+-+|.+.+.- .+..++++..+|+++-+
T Consensus 112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALCT 167 (190)
T ss_pred HHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999986433 3456677777763 23346666666666543
No 94
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.00054 Score=55.80 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=47.3
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH-HHHHHHHHHhcCc
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK-VLQQVMEQLQKLV 164 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~-~ieQI~kQLeKLv 164 (514)
+++.-.|+||++++|+++|+.+|.||..+......+.=.+.+.++..+. .++++.+.|+++-
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6788899999999999999999999999975544322125556665443 6788888887764
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.24 E-value=0.0017 Score=74.12 Aligned_cols=91 Identities=21% Similarity=0.363 Sum_probs=74.8
Q ss_pred cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033 324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL 402 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI 402 (514)
..+++..|+. ..+. .-.-.|.|.+.|++|+|+.|+.+++.-+.||.++++......+...|++++. .+-..++++
T Consensus 650 eR~I~V~W~~---~~~~-~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l 725 (743)
T PRK10872 650 ERIVDAVWGE---SYSS-GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRV 725 (743)
T ss_pred ceEEEeEecC---CCCc-eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHH
Confidence 4688999972 1122 2255899999999999999999999999999999986544367778887776 588899999
Q ss_pred HHHHhcCccEEEEEec
Q 047033 403 MQQLYKLIDLHEVRDL 418 (514)
Q Consensus 403 ~kQL~KLidVikV~dl 418 (514)
+++|+++.+|.+|...
T Consensus 726 ~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 726 LGKLNQVPDVIDARRL 741 (743)
T ss_pred HHHHhcCCCcCeEEec
Confidence 9999999999999764
No 96
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=97.21 E-value=0.0017 Score=73.52 Aligned_cols=88 Identities=16% Similarity=0.224 Sum_probs=72.9
Q ss_pred cccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHH
Q 047033 324 NQVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKL 402 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI 402 (514)
.++++..|+. +....-.-+|.|.+.|++|+|+.|+.+++.-+.||.++++... ..+...|.+.+. .+-+.+..|
T Consensus 594 er~I~v~W~~----~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~i 668 (683)
T TIGR00691 594 EKIIEVEWNA----SKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKI 668 (683)
T ss_pred ccEEEEEecC----CCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHH
Confidence 4788999972 2122235699999999999999999999999999999999654 457777777765 588899999
Q ss_pred HHHHhcCccEEEEE
Q 047033 403 MQQLYKLIDLHEVR 416 (514)
Q Consensus 403 ~kQL~KLidVikV~ 416 (514)
+.+|.++-+|.+|.
T Consensus 669 i~~L~~i~~V~~v~ 682 (683)
T TIGR00691 669 MLKIKTKNDVIVVK 682 (683)
T ss_pred HHHHhCCCCceEEe
Confidence 99999999999985
No 97
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.21 E-value=0.0016 Score=60.60 Aligned_cols=75 Identities=24% Similarity=0.380 Sum_probs=63.4
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEec
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~dl 418 (514)
+.+||++.++|+.|.|+++..+.++++.||-+++-.-- -.+...+|+.++ +-+..++.|+..|+|+-.|.+|+-+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ip-l~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv 147 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIP-LQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV 147 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccc-cCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence 46899999999999999999999999999988776532 235566666665 7788999999999999999999854
No 98
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.20 E-value=0.0017 Score=60.39 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=62.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeee-cCCCcEEEEEE--ecChHHHHHHHHHHhcCcceeeEeec
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGL-NKDKALFTIVV--YGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~-Ted~~~~TIVv--~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
-+.++|++.++++.|.|+++....++++.||-+++..- -+..+-+||.+ .+-+..++.++..|.|+-.|.+|+-+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVeiv 147 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEIV 147 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEEe
Confidence 57899999999999999999999999999998887653 23333466654 47788899999999999999999854
No 99
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0025 Score=50.03 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=46.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec------ChHHHHHHHHHHhcC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG------TDKVLQQVMEQLQKL 163 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g------de~~ieQI~kQLeKL 163 (514)
.|.+...|+||+|++++++|+..|+||.++.+....+....++.+.. +++..+++.+.|.+.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999999999998765543334554432 344566666666543
No 100
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0024 Score=51.92 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=36.6
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEE
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVV 146 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv 146 (514)
.+.|.+.|+||+|.+|+++|++.|+||.|..+...++....++.+
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 578899999999999999999999999999987653332345544
No 101
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0021 Score=52.58 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=47.9
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEE-e---C----ChHHHHHHHHHHhcC
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVV-P---A----TDESISKLMQQLYKL 409 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV-~---g----de~~ieQI~kQL~KL 409 (514)
+|.+...|+||+|++|++.|++.|.||.+-.+... +. ..--++.| + | +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~-~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NG-RLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CC-EEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999988854 33 34444444 3 2 345678888888764
No 102
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.10 E-value=0.0033 Score=51.61 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=53.2
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
...|++.-.|+||++++|++.+++.|.||..+......+ .-.+++.+.++++..+++.+.|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~--~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGG--RFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETT--EEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcC--eEEEEEEEEeCcccHHHHHHHHHHH
Confidence 458999999999999999999999999999988887654 4568888888888999999999876
No 103
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0037 Score=51.67 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=47.9
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhc
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYK 408 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~K 408 (514)
+|.|...|+||+|.++++.|++.|+||.+-.+..|.+...--.-.|.+++ ++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999887766554444444422 2445556666654
No 104
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0054 Score=48.17 Aligned_cols=61 Identities=28% Similarity=0.278 Sum_probs=45.8
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhc
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYK 408 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~K 408 (514)
.|.|.+.|+||+|++|+++|+..|.||.++.+....+ ..-.++.+.+ +++..+++.+.|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGE--RAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCC--EEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999999999976543 4445555542 24456666666654
No 105
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.02 E-value=0.0052 Score=50.35 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=56.2
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcCccEEE
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KLidVik 414 (514)
++.+.+.|+||.|.+|...|+.+|+|+..|.--|... +.-..+-|-++|++..+++++++|.+...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 4566678999999999999999999999999988765 34455666677888889999999988655433
No 106
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.00 E-value=0.0045 Score=50.29 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=37.6
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP 393 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~ 393 (514)
.+.|.+.|+||+|.+|+++|++.|+||.|..+.+.+ +..-.++.+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~--~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQG--DMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCC--CeEEEEEEEE
Confidence 578899999999999999999999999999887553 3444555553
No 107
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.005 Score=49.90 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=45.3
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEe---c----ChHHHHHHHHHHhc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVY---G----TDKVLQQVMEQLQK 162 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~---g----de~~ieQI~kQLeK 162 (514)
.+.+...|+||+|.+++++|++.|+||.+-.+..+.+.-. =++.+. + +++..+++.+.|.+
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999877754422 222332 1 34556677777654
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0057 Score=54.99 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=59.0
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV 415 (514)
+.+|.+.+.|+||.|.+|...|+.+|+|+.+|.--|+.. ..-..+-|=+.|+.+.+++++++|.+...-++|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 678888889999999999999999999999999998743 344455666778888899999999886654443
No 109
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0037 Score=51.12 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=46.4
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe----c----ChHHHHHHHHHHhcC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY----G----TDKVLQQVMEQLQKL 163 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~----g----de~~ieQI~kQLeKL 163 (514)
+|.++..|+||++++|+++|++.|.||.+-.+....+.-.-++.|. + +++..+++.+.|.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999885522222333332 2 345677888887664
No 110
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.93 E-value=0.0026 Score=52.46 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=46.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL 163 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL 163 (514)
.+|++.-.|+||+.++|+++++.+|.||..+......+.-.|.+.++.+....+++.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHH
Confidence 578999999999999999999999999999988873332235556655444456666555543
No 111
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.91 E-value=0.0057 Score=50.15 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=53.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecChHHHHHHHHHHhcCcceee
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGTDKVLQQVMEQLQKLVNVLK 168 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gde~~ieQI~kQLeKLvdVik 168 (514)
++.+.+.|+||.|.++...|+.+|+|+.+|.--|.... .. +=|-++|++..+++++++|.+...=++
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 45667789999999999999999999999998887654 32 445566777789999999988655333
No 112
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.90 E-value=0.0019 Score=59.23 Aligned_cols=124 Identities=20% Similarity=0.328 Sum_probs=82.2
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
|+-..||+++||+||=|..++......|+||..++.+.|.+-+|-|| +|+- .+...+..+ +.
T Consensus 1 m~vKQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm--vV~~-~d~A~~~Le---------------e~ 62 (142)
T COG4747 1 MIVKQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM--VVDR-PDEAHSVLE---------------EA 62 (142)
T ss_pred CceeEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE--EcCC-hHHHHHHHH---------------HC
Confidence 44568999999999999999999999999999999999999999776 4553 233333332 23
Q ss_pred hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEec--------CHHHHHHHHHHhccCCcE
Q 047033 422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTG--------DLDKMVALQRLLEPYGIC 486 (514)
Q Consensus 422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG--------~~~KIdafi~lL~pyGIl 486 (514)
.++-|+--.+-|..+.. -.-+-.|+++++.. |++-+++.-=++- ..+.+|+.++.|+..||.
T Consensus 63 gF~Vr~~dVlaVEmeD~-PG~l~~I~~vl~d~--diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~gi~ 132 (142)
T COG4747 63 GFTVRETDVLAVEMEDV-PGGLSRIAEVLGDA--DINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDAGIK 132 (142)
T ss_pred CcEEEeeeEEEEEecCC-CCcHHHHHHHHhhc--CcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHcCCe
Confidence 34444444454544321 12334455555443 3334444332222 346789999999999975
No 113
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.75 E-value=0.01 Score=67.71 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=77.5
Q ss_pred cccccccccceeeccCCcccccCccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEE
Q 047033 53 VSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLA 132 (514)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLt 132 (514)
|-.++++..||..||.-=+--..-....+.+..-.=.. .. ...-.-.|.+.+.|++|+|+.|+.+++.-+.||.+++
T Consensus 582 IvG~it~grGI~VHr~dC~nl~~l~~~~er~i~v~W~~-~~--~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~ 658 (702)
T PRK11092 582 IIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDK-ET--EQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLN 658 (702)
T ss_pred EEEEEECCCCEEEECcCCchhhhhhcCcceeEEeEECC-CC--CceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEE
Confidence 44588888999999843321111001111111100000 00 0123458999999999999999999999999999999
Q ss_pred eeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEeec
Q 047033 133 VGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 133 Vg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+....+. ..+++.+. .+-+.+++|+++|.++-+|.+|...
T Consensus 659 ~~~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 659 TEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 7543322 23555555 5678999999999999999999864
No 114
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.72 E-value=0.0039 Score=63.85 Aligned_cols=70 Identities=9% Similarity=0.125 Sum_probs=51.9
Q ss_pred ccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC-hHHHHHHHHHHhcCcc
Q 047033 96 TNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT-DKVLQQVMEQLQKLVN 165 (514)
Q Consensus 96 ~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd-e~~ieQI~kQLeKLvd 165 (514)
.+|+++++++.-.|+||+.++||++|+.+|.||+.++...+...+. |.+.+... ...++++...|+++-+
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999874444455 44444422 2236666666665543
No 115
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.71 E-value=0.0052 Score=50.66 Aligned_cols=63 Identities=29% Similarity=0.263 Sum_probs=46.1
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
..|++.-.|+||+.++|+++++.+|.||..+..-.....-.-||.+.++ ....+++.+.|+++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~--~~~~~~l~~~l~~~ 64 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS--WDAIAKLEAALPGL 64 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec--cccHHHHHHHHHHH
Confidence 5789999999999999999999999999999887744433444444443 33455665555443
No 116
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.69 E-value=0.0099 Score=49.18 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=36.5
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCe
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGL 385 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~i 385 (514)
|.+.|...|+||++++++|.|++.|+||.+-.+-.+.+.-.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~ 42 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLA 42 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeE
Confidence 68899999999999999999999999999988877755543
No 117
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.0098 Score=51.37 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=54.4
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT-DESISKLMQQLYKLI 410 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd-e~~ieQI~kQL~KLi 410 (514)
.+-+|.+.+.|+||.|.++...|+.+|+|+.+|.--|+... .-..+-|=++|. +..+++++++|.+-+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~ 82 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDI 82 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHh
Confidence 35678888899999999999999999999999999987543 334555556775 778888888887743
No 118
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.0094 Score=49.26 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=44.7
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEE-ec-----ChHHHHHHHHHHhc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVV-YG-----TDKVLQQVMEQLQK 162 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv-~g-----de~~ieQI~kQLeK 162 (514)
++.++..|+||+|.++++.|++.|+||.+-.+..|.+.-. =++.| +. +++..+++.+.|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~ 69 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRA 69 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999987765532 23333 22 22445556666644
No 119
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.66 E-value=0.0057 Score=62.62 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=54.3
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQLYKLI 410 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KLi 410 (514)
..|.++.+++...|+||+.++||++|+.+|.||..++...+...++-.|.+.+... ...++++...|+++-
T Consensus 3 ~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 3 RRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIA 74 (286)
T ss_pred CCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999755566666677666522 223566665555543
No 120
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.1 Score=61.15 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=50.2
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe------CChHHHHHHHHHHhcCcc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP------ATDESISKLMQQLYKLID 411 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~------gde~~ieQI~kQL~KLid 411 (514)
...+.|...|+||+|.+|+++|++.|+||.+..+.. .+...--+-.+.+ .+++..++|.+.|.+.++
T Consensus 843 ~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T-~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 843 FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIAT-YGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred eEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEE-cCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 368999999999999999999999999999999984 4443333333333 234457778888877653
No 121
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.57 E-value=0.013 Score=56.88 Aligned_cols=120 Identities=14% Similarity=0.221 Sum_probs=80.1
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcc---e-eeEeec
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVN---V-LKVEDL 172 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvd---V-ikV~dl 172 (514)
+++..+|+++=.|+||++++|+++++..|.||.......-...--|.+.+++....+.++...|.++.+ + +.+...
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~i~v~~~ 84 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRT 84 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeEEEEEec
Confidence 346779999999999999999999999999999988877655433566678877788888888877763 2 223332
Q ss_pred CChhhHHhhee-eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033 173 SNEPQVERELM-LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY 226 (514)
Q Consensus 173 t~~~~V~REL~-LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~ 226 (514)
.... .++.. .+.|.+....|+-|+ .++.+..-.++..|.|.+.+
T Consensus 85 ~~~~--~~~~~~~~~v~v~G~DrPGIV--------~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 85 TARP--RPAMPATVWVQVEVADSPHLI--------ERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred cccc--cccCCceEEEEEEECCCCCHH--------HHHHHHHHHcCCChhheEEe
Confidence 2211 23333 366766666677662 12344444555666665544
No 122
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.56 E-value=0.031 Score=64.60 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=49.1
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-C---ChHHHHHHHHHHhc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-A---TDESISKLMQQLYK 408 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-g---de~~ieQI~kQL~K 408 (514)
...+.|...|+||+|.+|+.+|+.+|.||.+..+........--+.+... | +++..+.|.++|.+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~ 847 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAA 847 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998765444444444322 2 34566777776653
No 123
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.54 E-value=0.014 Score=66.55 Aligned_cols=88 Identities=18% Similarity=0.336 Sum_probs=73.0
Q ss_pred ccccCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHH
Q 047033 325 QVLDPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLM 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~ 403 (514)
++++..|+--. ++.-...|.|...|++|+|+.|+.++++-+.||.+++.... +.+..-|.+.+. .+-..+.+|+
T Consensus 612 r~i~v~W~~~~----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~ 686 (701)
T COG0317 612 RVIDVSWGPEY----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVL 686 (701)
T ss_pred eEEEEEecCCC----CcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECcHHHHHHHH
Confidence 67888898432 33447899999999999999999999999999999999886 555555555554 3788999999
Q ss_pred HHHhcCccEEEEEe
Q 047033 404 QQLYKLIDLHEVRD 417 (514)
Q Consensus 404 kQL~KLidVikV~d 417 (514)
.||..+-+|..|..
T Consensus 687 ~~l~~~~~V~~v~R 700 (701)
T COG0317 687 ARLKQLPDVISVRR 700 (701)
T ss_pred HHHhcCCCeEEEEe
Confidence 99999999999864
No 124
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.51 E-value=0.0098 Score=57.61 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=68.6
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchh
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPF 423 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~ 423 (514)
..-||+.++|+||||..++|+.+.+|-||.-...--..+....+|-+-++|- +..+.+...|.-.-.|++|+.+..-+-
T Consensus 2 ~~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi-~d~e~l~~~lks~d~v~ev~i~~sle~ 80 (218)
T COG1707 2 LRGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI-DDFEKLLERLKSFDYVIEVEIHRSLEE 80 (218)
T ss_pred cceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC-CCHHHHHHHhhccceEEEeeecchHHH
Confidence 4579999999999999999999999999986554444444488888888864 458899999999999999999887766
Q ss_pred hheee
Q 047033 424 AEREL 428 (514)
Q Consensus 424 V~REL 428 (514)
++--=
T Consensus 81 iyGKR 85 (218)
T COG1707 81 IYGKR 85 (218)
T ss_pred HhCcE
Confidence 65443
No 125
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.47 E-value=0.0043 Score=66.17 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=60.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
-.|+|.+.=+|+||++++|+.++++.|+||..+.+....+.+.|.|-+++ ..-+.++++|+++-+|++|..+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 45789999999999999999999999999999999777655567776665 3355888999999999998754
No 126
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.42 E-value=0.017 Score=51.98 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=57.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYGTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~gde~~ieQI~kQLeKLvdVikV 169 (514)
.+..+.+.+.|+||.|.+|...|+.+|+|+.+|.--|.... . + +=|-++|+...+++++++|.+...-++|
T Consensus 40 ~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~~~~kv 113 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVAEDVRL 113 (115)
T ss_pred ccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhcCeeEe
Confidence 46788888899999999999999999999999999887544 2 2 4555677777789999999886654443
No 127
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.021 Score=47.72 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=46.0
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHh
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLY 407 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~ 407 (514)
.+|.|...|+||+|.+|+.+|++-|.+|.+-.+..-... .-..-.|.+ | |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Ger-v~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGW-FMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCe-EEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999999999877765443 333333333 2 3456777777763
No 128
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.29 E-value=0.02 Score=49.53 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=51.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--E-EEEEEecC-hHHHHHHHHHHhc
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--L-FTIVVYGT-DKVLQQVMEQLQK 162 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~-~TIVv~gd-e~~ieQI~kQLeK 162 (514)
.+-.|.+.+.|+||.|.++...|+.+|+|+.+|.--|..... + +=|-++|. +..+++++++|.+
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 456788888999999999999999999999999999876542 2 44445664 6778888888877
No 129
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.25 E-value=0.031 Score=57.27 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=51.8
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHHHHHHHhcCc
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISKLMQQLYKLI 410 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQI~kQL~KLi 410 (514)
.|+++.+++...|+||+.+.|+++++.+|.||..++.......+.-.|.+.+.. ....++++...|+++-
T Consensus 3 ~~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 3 MMQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999887434455555555554 1233555555555544
No 130
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.25 E-value=0.0093 Score=60.99 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=49.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEec--ChHHHHHHHHHHhcCc
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYG--TDKVLQQVMEQLQKLV 164 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~g--de~~ieQI~kQLeKLv 164 (514)
|+++.|++.-.|+||+++.|+++|+.+|.||+.++.......+. |.+.++. ....++++...|+++-
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999887333344 4444443 1233556665555554
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.24 E-value=0.0093 Score=63.67 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=60.0
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
-.|+|.+.=+|+||++++|+.++++.|+||.++.+.... +..-|+|-+++ ..-+.++++|+|+.+|++|.-+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~--~~A~~iie~D~--~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDG--EIGYVVIDVDA--DYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCC--CEEEEEEEeCC--CCcHHHHHHHHcCCCeEEEEEe
Confidence 468999999999999999999999999999999996555 55556665654 4566899999999999998754
No 132
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.22 E-value=0.041 Score=62.63 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=77.1
Q ss_pred ccccccccccceeeccCCcccccCccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeE
Q 047033 52 SVSSSLSKSNKIFLHSEPKKLAVSARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESL 131 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSL 131 (514)
.|-.++++..||..||.-=+-...... +.+..-.=. ...+ ..-.-.|.+.+.|++|+|+.|+.+++.-+.||.++
T Consensus 567 ~IiG~it~g~Gi~VHr~dC~nl~~~~~--er~I~v~W~-~~~~--~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v 641 (683)
T TIGR00691 567 PIIGIVTKGKGLSVHHKDCKNLKNYKQ--EKIIEVEWN-ASKP--RRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSI 641 (683)
T ss_pred cEEEEEECCCCEEEEccCchhhhhcCc--ccEEEEEec-CCCC--ceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEE
Confidence 345588888899999843322211110 111110000 0001 12355899999999999999999999999999999
Q ss_pred EeeecCCC-cEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033 132 AVGLNKDK-ALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 132 tVg~Ted~-~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~ 170 (514)
++....+. ..+++.+. .+-+.+..|+.+|.++-+|.+|.
T Consensus 642 ~~~~~~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 642 STKTYGKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EeEEcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 98654322 23555555 56789999999999999999885
No 133
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.026 Score=46.74 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEe
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVY 147 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~ 147 (514)
|.|.|+..|+||++++++|.|++.|+||.+-.+-.+.|.-. =+++|.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEe
Confidence 57899999999999999999999999999998887766533 344443
No 134
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.05 E-value=0.15 Score=59.73 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=49.7
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHhcCc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLYKLI 410 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~KLi 410 (514)
-.|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+--.-.|.+ | +++..++|.+.|.+.+
T Consensus 815 T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 815 TVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999887 444444444443 2 2346677777776654
No 135
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.039 Score=45.93 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=51.2
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
++.+.+.|+||.|.++...|..+|+|+..|.--|.-.. .-..+-|-++|+...++++++.|.+
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 35556689999999999999999999999999886543 3455566677888888888888876
No 136
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.037 Score=46.25 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=46.3
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEE-ec----ChHHHHHHHHHHh
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVV-YG----TDKVLQQVMEQLQ 161 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv-~g----de~~ieQI~kQLe 161 (514)
.+|.|...|+||+|.+|+.+|++-|++|.+-.++--.+.. .|-++- +| |++..+.|.++|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999999999999998887655443 244432 22 3566777777764
No 137
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.03 E-value=0.023 Score=55.13 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=62.9
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC--CcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhH
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD--KALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQV 178 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted--~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V 178 (514)
.-||+.++|+||||..++|+.+.+|-||.-...-...| .+.+-.-++|-+ ..+.+...|+-.-.|+.|+.+..-+.+
T Consensus 3 ~~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~-d~e~l~~~lks~d~v~ev~i~~sle~i 81 (218)
T COG1707 3 RGLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID-DFEKLLERLKSFDYVIEVEIHRSLEEI 81 (218)
T ss_pred ceeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC-CHHHHHHHhhccceEEEeeecchHHHH
Confidence 46899999999999999999999999998665544334 244555566643 578999999999999999998876665
Q ss_pred Hhh
Q 047033 179 ERE 181 (514)
Q Consensus 179 ~RE 181 (514)
+--
T Consensus 82 yGK 84 (218)
T COG1707 82 YGK 84 (218)
T ss_pred hCc
Confidence 543
No 138
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.03 E-value=0.017 Score=56.34 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=49.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHH
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISK 401 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQ 401 (514)
.|+|-+.=.|+||++.+|+.++.+.|+||.++.+|..+..+-.=|.|.+++ +++.+++
T Consensus 148 g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 148 HPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred ccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 478888889999999999999999999999999999888777778888875 4555554
No 139
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.92 E-value=0.035 Score=44.46 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=50.2
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhc
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYK 408 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~K 408 (514)
+++.+.++||-|.++..+++. |.||..+.-.... .+..+++++++. +.+.++++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~-~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQG-GDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC-CCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 468889999999999999999 9999999887654 566777777773 45789999999876
No 140
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.91 E-value=0.058 Score=61.65 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=79.4
Q ss_pred ccccccccccceeeccCCccc--ccC--ccccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCce
Q 047033 52 SVSSSLSKSNKIFLHSEPKKL--AVS--ARSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYN 127 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyN 127 (514)
.|-.++.+.+||..||..-+- ... ++.-.-.+.-+.- + ...-...|.|...|++|+|+.|+.++++-+.|
T Consensus 581 ~IvG~it~g~Gi~iHr~dC~~~~~~~~~~per~i~v~W~~~-~-----~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~n 654 (701)
T COG0317 581 PIVGYITKGRGISIHRQDCPNFLQLAGHAPERVIDVSWGPE-Y-----GQVYPVDIEIRAYDRSGLLRDVSQVLANEKIN 654 (701)
T ss_pred cEEEEEecCCcEEEehhcChhHHHhhhcCcceEEEEEecCC-C-----CcceEEEEEEEEccccchHHHHHHHHHhCCCc
Confidence 345689999999999844322 111 1101111111110 0 12467799999999999999999999999999
Q ss_pred eeeEEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEee
Q 047033 128 IESLAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 128 IeSLtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~d 171 (514)
|.++....+ +.+ .|.+.+. .+-..+.+|+.||..+-+|..|..
T Consensus 655 i~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 655 VLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred eEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence 999998876 333 3544444 567889999999999999999864
No 141
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.90 E-value=0.014 Score=64.10 Aligned_cols=74 Identities=22% Similarity=0.394 Sum_probs=59.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
..++|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+.-..+++-|+..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEE
Confidence 45678777899999999999999999999999999987765543334444455567888889999999888765
No 142
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.89 E-value=0.035 Score=58.00 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=55.9
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee---ecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG---HAETEGLSRITTVVPA-TDESISKLMQQLYKL 409 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg---~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KL 409 (514)
+.++|++.+.|+||.|.+++.+++..|.||.++... +....+...+++.++. +.+.+++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 467999999999999999999999999999999776 3334467788888874 567788999988764
No 143
>PRK07334 threonine dehydratase; Provisional
Probab=95.87 E-value=0.037 Score=58.67 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=56.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEe-CChHHHHHHHHHHhcC
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVP-ATDESISKLMQQLYKL 409 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~-gde~~ieQI~kQL~KL 409 (514)
..+|.|.+.|+||+|++|+.+++.-+.||.+++..... ..+..+|.+++. .+.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 47999999999999999999999999999999986431 356777777776 4888999999999986
No 144
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.86 E-value=0.034 Score=46.81 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=45.1
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeee--ecCCCCeeEEEEEEeC----ChHHHHHHHHHHhc
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG--HAETEGLSRITTVVPA----TDESISKLMQQLYK 408 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg--~Te~~~iSRiTIVV~g----de~~ieQI~kQL~K 408 (514)
.|.|...|+||+|.+|+..|.+-|++|.+-.++ .-...-+.-+-+..+| |++..+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999997777 4333333334443334 34556666666644
No 145
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.82 E-value=0.046 Score=45.46 Aligned_cols=61 Identities=13% Similarity=0.253 Sum_probs=49.1
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc-E--EEEEEecChHHHHHHHHHHhc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA-L--FTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~--~TIVv~gde~~ieQI~kQLeK 162 (514)
.+.+.+.|+||.|.++...|+++|+|+..|.--|..... - +=|-++|+...++++++.|.+
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 355667899999999999999999999999988875542 2 456667877788888888866
No 146
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=95.81 E-value=0.023 Score=54.43 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=59.2
Q ss_pred EEEEEEE--eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033 345 HTLSMLV--NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 345 htLSIlV--eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~ 416 (514)
+.|.++. .+.||+|+.|+++.+.||++|..+-....|-.+-+++||++++ ..-..++.||.|+--|.+|.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~ 165 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKIS 165 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEE
Confidence 4555555 5689999999999999999999998888877788999999984 35567889999999998875
No 147
>PRK11899 prephenate dehydratase; Provisional
Probab=95.71 E-value=0.056 Score=55.41 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=58.0
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV 415 (514)
|-.|.+.+.|+||.|.++.+.|++||+|+.+|..-|+-. ++-..+-|-+.| ++..+++..++|++.-.-++|
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~kv 268 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVRI 268 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEEE
Confidence 567777889999999999999999999999999999854 466677777777 456788888888876553333
No 148
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.68 E-value=0.05 Score=62.61 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=78.8
Q ss_pred ccccccccccceeeccCCcccccCc-cccccccccCCCCCCCCCcccceEEEEEEEEeCchhHHHHHHHHHhccCceeee
Q 047033 52 SVSSSLSKSNKIFLHSEPKKLAVSA-RSADENITEGTFTSRSTNRTNVRRHTISVFVGDESGMINRIAGVFARRGYNIES 130 (514)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeS 130 (514)
.|-.|+++..||..||.-=+-...- ...-+.+..=.=.. ... ..-.-.|.|.+.|++|+|+.|+.+++.-+.||.+
T Consensus 620 ~IvG~iTrGrGI~VHr~dC~nl~~l~~~~~eR~I~V~W~~-~~~--~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~ 696 (743)
T PRK10872 620 EIVGFITQGRGISIHRADCEQLAELRSHAPERIVDAVWGE-SYS--SGYSLVVRVTANDRSGLLRDITTILANEKVNVLG 696 (743)
T ss_pred cEEEEEECCCCEEEEcccChhhHhhhhcCCceEEEeEecC-CCC--ceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEE
Confidence 3556888889999998443211110 00001111000000 000 1134589999999999999999999999999999
Q ss_pred EEeeecCCCc--EEEEEEe-cChHHHHHHHHHHhcCcceeeEeec
Q 047033 131 LAVGLNKDKA--LFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 131 LtVg~Ted~~--~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
+++......+ .+++++. .+-..+++++++|.++-+|++|...
T Consensus 697 v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 697 VASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 9985443123 3666655 5678999999999999999999864
No 149
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.63 E-value=0.015 Score=56.07 Aligned_cols=74 Identities=20% Similarity=0.311 Sum_probs=52.2
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc----EEEE--EEec-ChHHHHHHHHHHhcCcceeeE
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA----LFTI--VVYG-TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~----~~TI--Vv~g-de~~ieQI~kQLeKLvdVikV 169 (514)
....+.+.+-+.|+||++++++.+|.++|+||++|..-.---++ .+++ .+.- ---.+.+++.+++.|-|=+.|
T Consensus 89 ~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 89 NPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV 168 (176)
T ss_pred CCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence 45678999999999999999999999999999999877543322 2333 2221 123467777777766554444
Q ss_pred e
Q 047033 170 E 170 (514)
Q Consensus 170 ~ 170 (514)
+
T Consensus 169 ~ 169 (176)
T COG2716 169 D 169 (176)
T ss_pred e
Confidence 3
No 150
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.57 E-value=0.027 Score=61.89 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=60.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
.|+|-+.-.|+||++.+|+.+|++.|+||.++.++..+..+..=|.|-++ +..-+.++++|.++.+|.+|..+
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~~~~i 524 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD--DPVPEEVLEELRALPGILSAKAV 524 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC--CCCCHHHHHHHhcCCCcceEEEE
Confidence 47888888999999999999999999999999999987666544544444 55568888899999999998765
No 151
>PRK07431 aspartate kinase; Provisional
Probab=95.33 E-value=0.67 Score=51.55 Aligned_cols=200 Identities=17% Similarity=0.225 Sum_probs=121.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCccee----eEeec--C-Chh----
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVL----KVEDL--S-NEP---- 176 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVi----kV~dl--t-~~~---- 176 (514)
.+.||++.|+.+.|++.|+||..++ + -...+++++..++ .+++++.|++....- .+..+ + +.+
T Consensus 359 ~~~~gi~~ki~~aL~~~~I~i~~i~---s-Se~~Is~vv~~~d--~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~g 432 (587)
T PRK07431 359 MGRPGIAAKMFDTLAEAGINIRMIS---T-SEVKVSCVIDAED--GDKALRAVCEAFELEDSQIEINPTASGQDEPEVRG 432 (587)
T ss_pred ccCccHHHHHHHHHHHCCCcEEEEE---c-CCCEEEEEEcHHH--HHHHHHHHHHHhccCCcccccCccccCCCCCcEEE
Confidence 4789999999999999999998888 2 2234778887543 556666666555222 12211 0 000
Q ss_pred -hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC-------EEEEEEeCChhHHHHHHHHhcc
Q 047033 177 -QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY-------SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 177 -~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~-------s~~iEvTG~~~kIdafi~~L~~ 248 (514)
...+.++++.+..-+ ....+ ...|+.+...++..|.=++.. +..+-++-+.+.++...+.++.
T Consensus 433 Ia~~~~~~~i~l~~~~-~~~g~--------~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~ 503 (587)
T PRK07431 433 VALDRNQAQLAIRNVP-DRPGM--------AASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRE 503 (587)
T ss_pred EEccCCEEEEEECCCC-CCccH--------HHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHH
Confidence 125567777774211 11111 113588888888888888752 4667788888877776666554
Q ss_pred CCcEEEeeccceeeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCccccccc
Q 047033 249 FGIREIARTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLD 328 (514)
Q Consensus 249 fGIlEvaRTG~iAl~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~ 328 (514)
+.- +. -.+.+.+.++
T Consensus 504 l~~-~~-~~~~i~~~~~--------------------------------------------------------------- 518 (587)
T PRK07431 504 LAK-QL-PGAEVEDGPA--------------------------------------------------------------- 518 (587)
T ss_pred HHH-hc-CCceEEEeCC---------------------------------------------------------------
Confidence 110 00 0000000000
Q ss_pred CCcccccCCCcccceeEEEEEE---EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHH
Q 047033 329 PHWGVLNDDDTSGLRSHTLSML---VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQ 405 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~khtLSIl---VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQ 405 (514)
--.+|+. ..++||++.|+...+++.|+|+..++. .--+++++|+ ++..++.++.
T Consensus 519 ---------------va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~------S~~~Is~vV~--~~~~~~av~~ 575 (587)
T PRK07431 519 ---------------IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT------SEIRTSCVVA--EDDGVKALQA 575 (587)
T ss_pred ---------------eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec------cceEEEEEEe--HHHHHHHHHH
Confidence 0112222 247899999999999999999988882 1135777776 5677888888
Q ss_pred HhcCc
Q 047033 406 LYKLI 410 (514)
Q Consensus 406 L~KLi 410 (514)
|++-.
T Consensus 576 Lh~~f 580 (587)
T PRK07431 576 VHQAF 580 (587)
T ss_pred HHHHh
Confidence 87765
No 152
>PRK11899 prephenate dehydratase; Provisional
Probab=95.32 E-value=0.11 Score=53.38 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=55.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV 169 (514)
.+-.|.+.+.|+||.|.++.+.|++||+|+.+|.--|+.+. + + |=|-++| ++..+++..++|++.-.-++|
T Consensus 193 ~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~~~kv 268 (279)
T PRK11899 193 IVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVRI 268 (279)
T ss_pred ceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcCcEEE
Confidence 46778888899999999999999999999999999998654 3 2 4555665 466788888888876554433
No 153
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.31 E-value=0.038 Score=53.99 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=46.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEec--ChHHHHH
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYG--TDKVLQQ 155 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~g--de~~ieQ 155 (514)
..|+|-+.=.|+||++.+|+.+|.+.|+||.++.++..+..+ +|.|.+++ +++.+++
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~ 207 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDA 207 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhh
Confidence 457888888999999999999999999999999999977554 47777775 4555554
No 154
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.21 E-value=0.076 Score=44.76 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=45.0
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEee--ecCCC--cEEEEEEec----ChHHHHHHHHHHhc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVG--LNKDK--ALFTIVVYG----TDKVLQQVMEQLQK 162 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg--~Ted~--~~~TIVv~g----de~~ieQI~kQLeK 162 (514)
+|.|...|+||+|.+|+..|++-|++|.+-.++ .-.+. +.|-+...| |+...+.|...|.+
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 588999999999999999999999999998887 33332 235554334 44556666666644
No 155
>PRK07334 threonine dehydratase; Provisional
Probab=95.19 E-value=0.077 Score=56.28 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=52.6
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC---CCc--EEEEEEe-cChHHHHHHHHHHhcC
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK---DKA--LFTIVVY-GTDKVLQQVMEQLQKL 163 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te---d~~--~~TIVv~-gde~~ieQI~kQLeKL 163 (514)
...|.|.+.|+||+|++|+.+++.-+.||.+++..... +.+ .+.+++. .+.+.+++++++|++.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46999999999999999999999999999999986431 223 3555555 4778899999999885
No 156
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.12 E-value=0.082 Score=44.55 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=48.6
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEE-Eec----ChHHHHHHHHHHhcC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIV-VYG----TDKVLQQVMEQLQKL 163 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIV-v~g----de~~ieQI~kQLeKL 163 (514)
++.|...|+||.|.+|+..|++-|++|.+-.++...+... |-|. ..| ++...+.+.+.|.+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999998887655433 4443 234 566677888777654
No 157
>PRK06382 threonine dehydratase; Provisional
Probab=95.01 E-value=0.083 Score=56.15 Aligned_cols=66 Identities=20% Similarity=0.357 Sum_probs=54.2
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee----ecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG----HAETEGLSRITTVVPAT-DESISKLMQQLYKL 409 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg----~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KL 409 (514)
++..|.+.+.|+||.|.+++.+|...|.||.++... +. ..+...+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~-~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKET-PPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccC-CCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 367899999999999999999999999999999876 33 35567788888864 35567999998764
No 158
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=95.00 E-value=0.023 Score=54.95 Aligned_cols=72 Identities=25% Similarity=0.273 Sum_probs=51.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC----CeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE----GLSRITTVVPA-TDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~----~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV 415 (514)
.|.+.+-++||||++++++.+|.++|+||++|..-.--.+ .+-.+.|.+.- -.-.+.++..+++.|-|=+.|
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L~v 168 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDELNV 168 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhhcc
Confidence 5788999999999999999999999999999987643332 33344444431 233577777777766554444
No 159
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.97 E-value=0.054 Score=55.48 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=46.3
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQK 162 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeK 162 (514)
+|++.-.|+||+.++||++++++|.||..++.-...+.++ |.+.++.++ ...+++...|+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 6889999999999999999999999999999877655565 555565433 235555555544
No 160
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=94.97 E-value=0.1 Score=54.52 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=51.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeee---cCCCc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGL---NKDKA--LFTIVVYG-TDKVLQQVMEQLQKL 163 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~---Ted~~--~~TIVv~g-de~~ieQI~kQLeKL 163 (514)
+.++|.+.+.|+||.|.+++.++++.|.||.++.... +.+.+ .+++.++. +.+..++|++-|++.
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDM 374 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 5569999999999999999999999999999997662 21223 36777764 467788898888764
No 161
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.95 E-value=0.042 Score=56.55 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=36.8
Q ss_pred cccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee
Q 047033 95 RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG 134 (514)
Q Consensus 95 ~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg 134 (514)
+++|.+++|++.-.|+||+.++||++++..|.||..++.-
T Consensus 4 ~~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 4 KPRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 3457788999999999999999999999999999999986
No 162
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.94 E-value=0.32 Score=50.15 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=51.6
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeee-cCCCC-eeEEEEEEeC----ChHHHHHHHHHHhcCccE-
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGH-AETEG-LSRITTVVPA----TDESISKLMQQLYKLIDL- 412 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~-Te~~~-iSRiTIVV~g----de~~ieQI~kQL~KLidV- 412 (514)
+.|.+++|++.-.|+||+.++||++++..|.||..++.-. +.... +.|+.++..+ +...+++-.+++-+-.++
T Consensus 5 ~~m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 5 PRSPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred ccccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCe
Confidence 3477789999999999999999999999999999998852 22233 4455555332 233444444444444443
Q ss_pred EEEEe
Q 047033 413 HEVRD 417 (514)
Q Consensus 413 ikV~d 417 (514)
++++.
T Consensus 85 ~~i~~ 89 (289)
T PRK13010 85 WAIHP 89 (289)
T ss_pred EEEec
Confidence 34444
No 163
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.94 E-value=0.11 Score=43.86 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=47.0
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C----ChHHHHHHHHHHhcC
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A----TDESISKLMQQLYKL 409 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g----de~~ieQI~kQL~KL 409 (514)
.+.|...|+||+|.+|+..|++-||+|.+-.++...+. ..-.-.+.+ | ++...+.|.+.|.+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~ger-a~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDD-AHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCce-EEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999888775443 333333332 3 555677777777553
No 164
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.87 E-value=0.039 Score=60.69 Aligned_cols=72 Identities=18% Similarity=0.358 Sum_probs=57.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
.-|+|-+.-.|+||++.+|+.++.+.++||-++.++..+..+. |.|.++ +..-+.++++|.++.+|.+|..+
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 3467877778999999999999999999999999998876554 555554 44456777888888888887654
No 165
>PRK08198 threonine dehydratase; Provisional
Probab=94.82 E-value=0.14 Score=54.07 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=56.8
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEeC-ChHHHHHHHHHHhcC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVPA-TDESISKLMQQLYKL 409 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~g-de~~ieQI~kQL~KL 409 (514)
+..++++.+.|+||.|.++..+++..|.||.+++..+.. ..+...++++++. +.+.+++|++.|++.
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 457999999999999999999999999999999987532 3477888888884 556789999999765
No 166
>PRK06382 threonine dehydratase; Provisional
Probab=94.70 E-value=0.12 Score=54.87 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=51.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee----ecCC-CcEEEEEEecC-hHHHHHHHHHHhcC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG----LNKD-KALFTIVVYGT-DKVLQQVMEQLQKL 163 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg----~Ted-~~~~TIVv~gd-e~~ieQI~kQLeKL 163 (514)
+...|.+.+.|+||.|.+++.+|...|.||.++... +.++ ...+++.++.. .+..++|.+.|++.
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999999999999876 3322 23477777653 45567888888764
No 167
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.69 E-value=1.6 Score=42.05 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=96.5
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC-hHHHHHHHHHHhcC-ccEEEEEec
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT-DESISKLMQQLYKL-IDLHEVRDL 418 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd-e~~ieQI~kQL~KL-idVikV~dl 418 (514)
+|+-++.|...|+||=|-++..=.+.-|-||-++.=..... -+--+.-|++.+| ++...++.+-+++. +.++++...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~ 82 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA 82 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence 57899999999999999999999999999998876655433 4566788888887 66677777777332 333333222
Q ss_pred CCchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEec----------CCEEEEEEecCHHHHHHHHHHhcc
Q 047033 419 THLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVS----------DHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 419 t~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs----------~~si~iE~TG~~~KIdafi~lL~p 482 (514)
..-.+-...||-=-+...-+.-|-.+-.+-+|.++|++ .--++++..| .+|++..++.|+.
T Consensus 83 --~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea~~~l~e 153 (170)
T COG2061 83 --RLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEALRRLKE 153 (170)
T ss_pred --CcceeEeEEEEEeeecCcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHHHHHHHH
Confidence 22233345566544555567778888889999999984 2236666665 4666666666653
No 168
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.52 E-value=0.12 Score=42.73 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=45.9
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhcCccE
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYKLIDL 412 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~KLidV 412 (514)
..+.||++.+|.+.|++.|.|++-+..++ ..++++++.++ +.+++|.+.|+++-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~------~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE------TNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 45789999999999999999999996522 66999998654 3799999999995443
No 169
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.50 E-value=0.15 Score=37.74 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=39.8
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL 406 (514)
+.|.||++.++...+.+.|.||+.++.++... +.-.++++++ ++..++..+.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~-~~~~is~~v~--~~~~~~~~~~l 60 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRG-GTTDISFTVP--KSDLEKALAIL 60 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCC-CcEEEEEEEe--HHHHHHHHHHh
Confidence 57899999999999999999999998876543 3355777776 34455554443
No 170
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.44 E-value=0.096 Score=53.68 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=47.5
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHhc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLYK 408 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~K 408 (514)
++|++.-.|+||+.++||++++.+|.||..++.-.....+.--|.+.++.++ ...+++...|+.
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 3789999999999999999999999999999887765556555666665432 234555544444
No 171
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.42 E-value=0.075 Score=58.51 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=60.0
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
-|+|-+.-.|+||++.+|+.++...++||.++.++..+..+..=|.|-++ +..-+.++++|.++.+|.+|..+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D--~~v~~~~l~~i~~~~~i~~v~~i 523 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD--QPVPDEVLEEIKAIPDILSVFVV 523 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC--CCCCHHHHHHHhcCCCccEEEEE
Confidence 47887788999999999999999999999999999987766655555555 45557788888888888888765
No 172
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.34 E-value=0.11 Score=40.20 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=37.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQLeK 162 (514)
+.|+||++.++...+++.|+||+.+..+..... ..+++++.. +..+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876654332 246677654 233444444443
No 173
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.33 E-value=0.22 Score=41.75 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=56.5
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-C-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-T-DESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-d-e~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
.++.+.+.|+||-|.+++.+++ |.||..+.-..... +-.++.++++. + .+.++++.+.|++.= .++.+.++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~-~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~ 76 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADE-KDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDE 76 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCC-CeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCH
Confidence 4688999999999999999999 77888766665443 56778887774 3 578999999988743 2455667665
Q ss_pred hh
Q 047033 423 FA 424 (514)
Q Consensus 423 ~V 424 (514)
..
T Consensus 77 ~~ 78 (85)
T cd04906 77 LA 78 (85)
T ss_pred HH
Confidence 44
No 174
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.32 E-value=0.22 Score=51.48 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=60.9
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV 415 (514)
+..|.+|.+.+.|+||.|-++.+.|+.||+|+..|..-|+-. .+-..+-|=+.| ++..+.+..+.|.+.-..+++
T Consensus 191 ~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ki 268 (279)
T COG0077 191 GPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred CCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEE
Confidence 456889999999999999999999999999999999999874 555566666665 555688888888877665555
No 175
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.25 E-value=0.22 Score=39.90 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec-ChHHHHHHHHHHhc
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG-TDKVLQQVMEQLQK 162 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g-de~~ieQI~kQLeK 162 (514)
+++.+.++||-|.++..+++. |.||-.+.-.... +.+.++++++. +.+.++++..+|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999876643 22446666653 45788999998876
No 176
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.20 E-value=0.13 Score=53.69 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=53.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcce
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNV 166 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdV 166 (514)
.-|.+.|.|.|+||.|.++++++.+.|+||+.+.+-++.+. +.+.|.+.. ++..++..+.|++-..+
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN-EEDRERAKALLEEFWTY 357 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC-HHHHHHHHHHHHhcCcc
Confidence 56899999999999999999999999999999999876433 567888764 34566666666665443
No 177
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.20 E-value=0.17 Score=41.91 Aligned_cols=57 Identities=14% Similarity=0.329 Sum_probs=44.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHHhcCccee
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQLeKLvdVi 167 (514)
..+.||++.++.+.|++.|+|++-++.+. .-+++++..++ +.++++++.|+++-+|.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s~----~~isftv~~~~~~~~~~~~~~l~~el~~~~~v~ 72 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTSE----TNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK 72 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEeCcccccchHHHHHHHHHHHhceEEE
Confidence 46789999999999999999999997522 44777776543 37899999999955443
No 178
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.12 E-value=0.18 Score=37.40 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=37.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecChHHHHHHHHHH
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTDKVLQQVMEQL 160 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde~~ieQI~kQL 160 (514)
+.|.||++.|+...|++.|+||+.++.++.... ..+++++.. +..++..+.|
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~--~~~~~~~~~l 60 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK--SDLEKALAIL 60 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH--HHHHHHHHHh
Confidence 578999999999999999999999988764432 236666653 3344544443
No 179
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=94.10 E-value=0.21 Score=40.80 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=44.3
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYK 408 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~K 408 (514)
..+.||++.||...+++.|+|++.++.++ .+++++++.++ +.+..|.+-|+|
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s~------~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTSE------VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcCC------cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 46789999999999999999999886422 67999998654 588999999999
No 180
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.06 E-value=0.12 Score=40.01 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=39.2
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
+.|+||++.++...+++.|.||+.+..+..+.. -.+++++++. +..+++.+.|++
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~-~~~is~~v~~--~d~~~~~~~l~~ 63 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPK--SDLKKALAVLEK 63 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCC-cEEEEEEecH--HHHHHHHHHHHH
Confidence 578999999999999999999998876654332 2457777763 334444444444
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.00 E-value=0.15 Score=53.32 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=49.0
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC--CCeeEEEEEEeCChHHHHHHHHHHhcCcc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET--EGLSRITTVVPATDESISKLMQQLYKLID 411 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~--~~iSRiTIVV~gde~~ieQI~kQL~KLid 411 (514)
-|.+.|.+.|+||+|.+|+++..+.|+||+.|.+-++-. .++-|+++- +++..++..+.|.+-..
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK---NEEDRERAKALLEEFWT 356 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC---CHHHHHHHHHHHHhcCc
Confidence 499999999999999999999999999999999976533 355555544 34455555555555443
No 182
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.97 E-value=0.26 Score=50.96 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=58.0
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEe--cChHHHHHHHHHHhcCcceeeEe
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVY--GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~--gde~~ieQI~kQLeKLvdVikV~ 170 (514)
..+..|.+.+.|+||.|.++.+.|+.||+|...|---|+... + . |-|-+. .++..+++..+-|.+.-..+++.
T Consensus 192 ~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~kil 269 (279)
T COG0077 192 PEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFVKIL 269 (279)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEEEEE
Confidence 468899999999999999999999999999999999998753 3 2 444454 45667888888888776655553
No 183
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=93.85 E-value=0.31 Score=53.47 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCe--eEEEEEEeCChHHHHHHHHHHhcCccEEE
Q 047033 337 DDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGL--SRITTVVPATDESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 337 ~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~i--SRiTIVV~gde~~ieQI~kQL~KLidVik 414 (514)
.+..+..+-+|.+.+.|+||.|.++..+|..+|+|+..|.--|+....- ..+-|-++|+...+.++++.|.+..+.++
T Consensus 24 ~~~~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~ 103 (464)
T TIGR01270 24 DEEEGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHE 103 (464)
T ss_pred ccCCCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccce
Confidence 3445555667777789999999999999999999999999988754432 35556677888899999999999888766
Q ss_pred EE
Q 047033 415 VR 416 (514)
Q Consensus 415 V~ 416 (514)
|.
T Consensus 104 ~~ 105 (464)
T TIGR01270 104 VS 105 (464)
T ss_pred ec
Confidence 64
No 184
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.68 E-value=0.055 Score=45.74 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=46.9
Q ss_pred EEEEEeC-chhHHHHHHHHHhccCceeeeEEeeecCC---------C-cEEEEEEecChHHHHHHHHHHhcCc
Q 047033 103 ISVFVGD-ESGMINRIAGVFARRGYNIESLAVGLNKD---------K-ALFTIVVYGTDKVLQQVMEQLQKLV 164 (514)
Q Consensus 103 IsvlVeN-~pGVLsRIaglFsRRgyNIeSLtVg~Ted---------~-~~~TIVv~gde~~ieQI~kQLeKLv 164 (514)
++++-.+ ++|.+++|+.+++.+|+||+.+.-= +.. + ..|.+.+.+.+..++.+.++|.++-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l-~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRL-SGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh-hccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 5677788 8999999999999999999988762 211 1 1367778877777888888887653
No 185
>PRK08198 threonine dehydratase; Provisional
Probab=93.60 E-value=0.32 Score=51.35 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=52.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC---CCc--EEEEEEec-ChHHHHHHHHHHhcC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK---DKA--LFTIVVYG-TDKVLQQVMEQLQKL 163 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te---d~~--~~TIVv~g-de~~ieQI~kQLeKL 163 (514)
-+..++++.+.|+||.|.++..+++..|.||.+++..+.. ..+ .++|+++. +.+.++++++.|++.
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDA 396 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3567999999999999999999999999999999987532 122 36666663 456788999999765
No 186
>PRK12483 threonine dehydratase; Reviewed
Probab=93.48 E-value=1.8 Score=48.22 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=93.8
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHH-HHHHHHHhcCccEEEEEecCC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESI-SKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~i-eQI~kQL~KLidVikV~dlt~ 420 (514)
+++.+.+...++||-|.+++.++..+ ||..+.--.. ..+-..+.++++. +.+.. ++|++.|++.= .++.|+++
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsd 418 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA-DAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTD 418 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec-CCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCC
Confidence 46899999999999999999999988 9998877653 3334667777763 33454 99999997743 46778888
Q ss_pred chh---------------hheeeEEEEEecCcccHHHHHHHHHhcCc--EEEEec-----CCE----EEEEEecCHHHHH
Q 047033 421 LPF---------------AERELMLIKVAVNTTARRDVLDIATIFRA--KAVDVS-----DHT----ITLELTGDLDKMV 474 (514)
Q Consensus 421 ~~~---------------V~REL~LIKV~~~~~~R~eI~~la~iFra--kIVDvs-----~~s----i~iE~TG~~~KId 474 (514)
.+. +.||- |+.|..+ +.....++.++.++- .|-..+ .+. +=|++. .++.+
T Consensus 419 ne~~k~h~r~~~g~~~~~~~~E~-~~~v~iP-E~pGa~~~f~~~l~~~~niTeF~YR~~~~~~a~v~vgi~~~--~~~~~ 494 (521)
T PRK12483 419 DELAKLHIRHMVGGRAPLAHDER-LFRFEFP-ERPGALMKFLSRLGPRWNISLFHYRNHGAADGRVLAGLQVP--EDERA 494 (521)
T ss_pred CHHHHHHHHhccCCCCCCCCceE-EEEEEcC-CCCcHHHHHHHHhCCCcceeeeeecCCCCCceEEEEEEeeC--hhHHH
Confidence 765 45664 6777665 455677778887765 232221 111 236763 36778
Q ss_pred HHHHHhccCC
Q 047033 475 ALQRLLEPYG 484 (514)
Q Consensus 475 afi~lL~pyG 484 (514)
.|++.|+..|
T Consensus 495 ~~~~~l~~~g 504 (521)
T PRK12483 495 ALDAALAALG 504 (521)
T ss_pred HHHHHHHHCC
Confidence 9999998776
No 187
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.44 E-value=0.079 Score=44.78 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=48.7
Q ss_pred EEEEEeC-cchHHHHHHHHhhccCceeeeEeeee-------cCCCCeeEEEEEEeCChHHHHHHHHHHhcCc
Q 047033 347 LSMLVND-SPGVLNIVTGVFARRGYNIQSLAVGH-------AETEGLSRITTVVPATDESISKLMQQLYKLI 410 (514)
Q Consensus 347 LSIlVeN-~pGVL~RItgLFsRRGyNIeSLtVg~-------Te~~~iSRiTIVV~gde~~ieQI~kQL~KLi 410 (514)
++++-.+ ++|.+++|+.+++.+|.||+.+.-=. +..+...-|.+.+.|.+...+.+.++|.++-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 6788888 99999999999999999999887621 1122344567777887778888888877653
No 188
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.40 E-value=0.19 Score=41.70 Aligned_cols=56 Identities=16% Similarity=0.365 Sum_probs=44.2
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH----HHH-HHHHHHhcCccE
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE----SIS-KLMQQLYKLIDL 412 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~----~ie-QI~kQL~KLidV 412 (514)
+.+.||++.+|...|++.|.||+-++.++ ..++++++.++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~------~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE------ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC------CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 56889999999999999999999997522 569999986653 344 688888885444
No 189
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.35 E-value=0.63 Score=48.99 Aligned_cols=127 Identities=12% Similarity=0.137 Sum_probs=86.4
Q ss_pred EEEEEE---EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 345 HTLSML---VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 345 htLSIl---VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
..+++. +.|+||++.|+...|.+.|.||+.++.+.++ ..++++++ ++..+++.+.|++...-.... .
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~----~~Is~~V~--~~d~~~a~~~L~~~~~~~~~~----~ 330 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE----TSISLTVD--ETDADEAVRALKDQSGAAGLD----R 330 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC----ceEEEEEe--HHHHHHHHHHHHHHHHhcCCc----e
Confidence 356666 7899999999999999999999999887654 34788886 344666666676653211110 1
Q ss_pred hhhheeeEEEEEecCcc-----cHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 422 PFAERELMLIKVAVNTT-----ARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 422 ~~V~REL~LIKV~~~~~-----~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-.+++.+++|.|--..- .-..+++.....+.+|.-++.....+-+.=+.+..+..++.|.
T Consensus 331 i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh 395 (401)
T TIGR00656 331 VEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH 395 (401)
T ss_pred EEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence 12567788888754331 2357788888888888888766555555556666666666654
No 190
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.32 E-value=0.14 Score=54.39 Aligned_cols=51 Identities=25% Similarity=0.379 Sum_probs=40.7
Q ss_pred eEEEEEEEe-CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC
Q 047033 344 SHTLSMLVN-DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT 395 (514)
Q Consensus 344 khtLSIlVe-N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd 395 (514)
.|.|.+.+. |+||+|.+|+++|+++|+||.+|....+....+- +-|-+.+.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~ 346 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG 346 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence 589999995 9999999999999999999999999554443333 66666643
No 191
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.25 E-value=0.37 Score=51.53 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=55.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV 169 (514)
.+-.|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... + + |=|-+.| ++..+++..++|++.-.-++|
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kv 371 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLKV 371 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 36677788899999999999999999999999999988765 2 2 4455555 456788888898886553333
No 192
>PRK11898 prephenate dehydratase; Provisional
Probab=93.11 E-value=0.47 Score=48.60 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=51.6
Q ss_pred eEEEEEEEEeCc-hhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcce
Q 047033 99 RRHTISVFVGDE-SGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNV 166 (514)
Q Consensus 99 ~~h~IsvlVeN~-pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdV 166 (514)
.+-.|.+.+.|+ ||.|.++.+.|+++|+|+.+|---|.... . + +=|-++| ++..++++++.|++...-
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~~ 268 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGED 268 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcCc
Confidence 456777778775 99999999999999999999998887543 2 2 3344444 445789999999886553
No 193
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=93.11 E-value=0.43 Score=51.08 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=57.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT--DESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV 415 (514)
+-+|.+.+.|+||.|.++.+.|+.||+|+.+|.--|+... +-..+-|=+.|+ +..+++..++|++.-.-++|
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~~~kv 371 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITRSLKV 371 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 5677777899999999999999999999999999988754 555666667774 45688999998886553333
No 194
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.91 E-value=0.27 Score=52.39 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=40.2
Q ss_pred eEEEEEEEEe-CchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEecC
Q 047033 99 RRHTISVFVG-DESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVYGT 149 (514)
Q Consensus 99 ~~h~IsvlVe-N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~gd 149 (514)
.-+.|.+.+. |+||.|.+|+++|+++|+||.+|....+..... +-|.+.+.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~f~i~~~~~ 346 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELHFRIGFEPG 346 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEEEEEEEecc
Confidence 4689999995 999999999999999999999999954443332 55655543
No 195
>PRK12483 threonine dehydratase; Reviewed
Probab=92.91 E-value=2.3 Score=47.34 Aligned_cols=132 Identities=15% Similarity=0.240 Sum_probs=86.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
+++.+.+.+.++||-|.+++.++..+ ||..+.--..... ..+.++++ +.+...++|+++|++.= +++.++++.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g--~~~~dlsdn 419 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQG--FPVLDLTDD 419 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCC--CCeEECCCC
Confidence 67899999999999999999999988 9998876542222 33555554 33433499999997743 578888876
Q ss_pred hhH---------------HhheeeEEEecCccccccccccccccchhhHHHHHHhcCCE--EEEe-------cCCEE--E
Q 047033 176 PQV---------------ERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAK--IVDI-------SEYSL--T 229 (514)
Q Consensus 176 ~~V---------------~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~ak--VVDv-------s~~s~--~ 229 (514)
+.. .||- |+.|..+ |..... .+.++.++.+ |-.. ....+ =
T Consensus 420 e~~k~h~r~~~g~~~~~~~~E~-~~~v~iP-E~pGa~------------~~f~~~l~~~~niTeF~YR~~~~~~a~v~vg 485 (521)
T PRK12483 420 ELAKLHIRHMVGGRAPLAHDER-LFRFEFP-ERPGAL------------MKFLSRLGPRWNISLFHYRNHGAADGRVLAG 485 (521)
T ss_pred HHHHHHHHhccCCCCCCCCceE-EEEEEcC-CCCcHH------------HHHHHHhCCCcceeeeeecCCCCCceEEEEE
Confidence 653 3442 5555554 344444 6667766652 2221 11112 2
Q ss_pred EEEeCChhHHHHHHHHhccCC
Q 047033 230 IEVTGDPGKMVAVQRNLSKFG 250 (514)
Q Consensus 230 iEvTG~~~kIdafi~~L~~fG 250 (514)
||+. .++.++|++.|+..|
T Consensus 486 i~~~--~~~~~~~~~~l~~~g 504 (521)
T PRK12483 486 LQVP--EDERAALDAALAALG 504 (521)
T ss_pred EeeC--hhHHHHHHHHHHHCC
Confidence 5663 377788999998766
No 196
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.85 E-value=0.39 Score=46.21 Aligned_cols=72 Identities=19% Similarity=0.348 Sum_probs=57.5
Q ss_pred ceEEEEEEEE--eCchhHHHHHHHHHhccCceeeeEEeeecC--CCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 98 VRRHTISVFV--GDESGMINRIAGVFARRGYNIESLAVGLNK--DKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 98 ~~~h~IsvlV--eN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
+-.++|.++. .+.||++..|+++.+.||++|..+-....| ++.++||++++ .....++.||.|+--|.+|.-
T Consensus 91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~--~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTER--PIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEec--cCCHHHHHHHhcccCceeEEe
Confidence 4567888887 468999999999999999999988777543 45679999865 345578889999988888763
No 197
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.83 E-value=0.85 Score=38.25 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=54.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEec-C-hHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVYG-T-DKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~g-d-e~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
.++.+.+.++||-|.+++.+++ |.||..+.-.... +.+.+.++++. + .+.++++++.|++.= +++.+.++.+.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G--~~~~~~~~~~~ 77 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAG--YEVVDLSDDEL 77 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCC--CCeEECCCCHH
Confidence 4789999999999999999999 7788876666543 33456666553 3 577889998888743 35666777665
Q ss_pred HH
Q 047033 178 VE 179 (514)
Q Consensus 178 V~ 179 (514)
..
T Consensus 78 ~~ 79 (85)
T cd04906 78 AK 79 (85)
T ss_pred HH
Confidence 43
No 198
>PRK11898 prephenate dehydratase; Provisional
Probab=92.61 E-value=0.62 Score=47.73 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=53.3
Q ss_pred eEEEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChH--HHHHHHHHHhcCcc
Q 047033 344 SHTLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDE--SISKLMQQLYKLID 411 (514)
Q Consensus 344 khtLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~--~ieQI~kQL~KLid 411 (514)
+-.|.+.+.|+ ||.|.++.+.|+++|+|+..|.--|... +.-..+-+=++|+.. .++++++.|++.-.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56777778775 9999999999999999999999988754 334455555666444 78999999988654
No 199
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=92.56 E-value=0.32 Score=40.19 Aligned_cols=56 Identities=11% Similarity=0.239 Sum_probs=44.7
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--H-HHHHHHHHHhcCccE
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--E-SISKLMQQLYKLIDL 412 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~-~ieQI~kQL~KLidV 412 (514)
....||++.+|.+.|++.|.|++-+..++ ..++++++.++ + .++.|.+-|+|+-+|
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s~------~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTSE------VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeCC------CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 35579999999999999999999997522 56899998543 3 788999999995433
No 200
>PLN02550 threonine dehydratase
Probab=92.23 E-value=2.9 Score=47.41 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=95.6
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
+++.+.+.+-++||-|.+++.++..+ ||..+.--. .+.+-.++.+.++ -+.+.+++|+..|++.= .++.|+++.
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY-SSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe-cCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 45889999999999999999999987 999888776 3444567777776 36778999999998854 578889887
Q ss_pred hhh--------------heeeEEEEEecCcccHHHHHHHHHhcCcE--EEEe----cC-----CEEEEEEecCHHHHHHH
Q 047033 422 PFA--------------ERELMLIKVAVNTTARRDVLDIATIFRAK--AVDV----SD-----HTITLELTGDLDKMVAL 476 (514)
Q Consensus 422 ~~V--------------~REL~LIKV~~~~~~R~eI~~la~iFrak--IVDv----s~-----~si~iE~TG~~~KIdaf 476 (514)
+.. .||. |+.|..+ +......+.++.++-+ |-.. +. =.+=||+. .++++.|
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~-l~~v~fP-ErpGAl~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~v~--~~e~~~l 566 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDEL-LYRFVFP-ERPGALMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQVP--PEEMQEF 566 (591)
T ss_pred hHHhhhhhheeccccccCceE-EEEEEec-CcCCHHHHHHHhhCCCCceeeEEeecCCCCCccEEEEEeeC--HHHHHHH
Confidence 654 3443 5666654 3345667777776652 2221 11 12347775 4788899
Q ss_pred HHHhccCCc
Q 047033 477 QRLLEPYGI 485 (514)
Q Consensus 477 i~lL~pyGI 485 (514)
++.|+..|.
T Consensus 567 ~~~l~~~gy 575 (591)
T PLN02550 567 KSRANALGY 575 (591)
T ss_pred HHHHHHcCC
Confidence 999988774
No 201
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.21 E-value=0.39 Score=39.85 Aligned_cols=56 Identities=13% Similarity=0.386 Sum_probs=42.2
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH----HHH-HHHHHHhcCcce
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK----VLQ-QVMEQLQKLVNV 166 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~----~ie-QI~kQLeKLvdV 166 (514)
+.+.||++.+|...|++.|+||+-++.+. .-+++++..++. .+. .|.+-|+|+-+|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s~----~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTSE----ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeecC----CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 57889999999999999999999997522 447777775543 344 577788885444
No 202
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.03 E-value=0.47 Score=36.77 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=39.7
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.+.||++.|+...+++.|.|++.++.+..+ .++.++++.+ ..++..+.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~--~~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK--DAVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH--HHHHHHHHHHH
Confidence 368999999999999999999999876643 6788888853 34555665655
No 203
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=92.00 E-value=0.68 Score=34.94 Aligned_cols=51 Identities=22% Similarity=0.396 Sum_probs=38.7
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
..+.||++.|+.+.+++.|.|++.++.. + .+++++++. ...+++.+-|+|.
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~----~~is~~v~~--~d~~~~~~~l~~~ 60 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS--E----IKISCLIDE--DDAEKAVRALHEA 60 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc--C----ceEEEEEeH--HHHHHHHHHHHHH
Confidence 4577999999999999999999999842 1 568888883 4455556666554
No 204
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=91.99 E-value=0.66 Score=37.86 Aligned_cols=53 Identities=13% Similarity=0.367 Sum_probs=43.0
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHHhc
Q 047033 106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQLQK 162 (514)
Q Consensus 106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQLeK 162 (514)
-..+.||++.|+...|++.|+|++.++.+ ...+++++..++ ..+..+.+-|+|
T Consensus 10 ~l~~~~g~~~~if~~L~~~~I~v~~i~~s----~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 10 RMLGAHGFLAKVFEIFAKHGLSVDLISTS----EVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CCCCCccHHHHHHHHHHHcCCeEEEEEcC----CcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 35678999999999999999999988632 245777777544 588899999999
No 205
>PLN02317 arogenate dehydratase
Probab=91.97 E-value=0.76 Score=49.45 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC---------------CeeEEEEEEeCC--hHHHHHHHHHH
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE---------------GLSRITTVVPAT--DESISKLMQQL 406 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~---------------~iSRiTIVV~gd--e~~ieQI~kQL 406 (514)
|-.|.+.++|+||.|.++..+|+.||+|+..|.--|.-.. .-..+-|=++|. +..+++.++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 5667777799999999999999999999999998886544 223444555565 66788888888
Q ss_pred hcCccEEEE
Q 047033 407 YKLIDLHEV 415 (514)
Q Consensus 407 ~KLidVikV 415 (514)
++.-.-++|
T Consensus 363 ~~~~~~lrv 371 (382)
T PLN02317 363 QEFATFLRV 371 (382)
T ss_pred HHhcCeEEE
Confidence 876554333
No 206
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.90 E-value=0.46 Score=55.54 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=51.2
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC----ChHHHHHHHHHHhcCccE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA----TDESISKLMQQLYKLIDL 412 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g----de~~ieQI~kQL~KLidV 412 (514)
...|.|...|+||+|.+|+++|++.|.||.+-.+..+ +..+-- ++.|.+ +++..++|.+.|.+.++|
T Consensus 786 ~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~-~~~v~D-vF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 786 YYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL-GERVED-TFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred EEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-CCEEEE-EEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 4589999999999999999999999999999888877 333333 333332 456678888888776654
No 207
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=91.68 E-value=0.52 Score=36.45 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=38.9
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHH
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQL 160 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQL 160 (514)
.+++|+..++..+|++.|+|++-++.+. .-+++++..++ +.++.+++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~----~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE----NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC----CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996422 45888887655 6777777765
No 208
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=91.68 E-value=0.46 Score=36.72 Aligned_cols=49 Identities=14% Similarity=0.367 Sum_probs=39.9
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHH
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQL 406 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL 406 (514)
.++||+..+|...|.+.|.|++-++.++ -.+++++..++ +.++.+++.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t~~------~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEecCC------CEEEEEEehhhhhHHHHHHHHhh
Confidence 4679999999999999999999996522 56999998766 6777777765
No 209
>PRK06635 aspartate kinase; Reviewed
Probab=91.66 E-value=0.78 Score=48.35 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=77.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEecChHHHHHHHHHHhcC---cceeeEeecCChhhHHhhe
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVYGTDKVLQQVMEQLQKL---VNVLKVEDLSNEPQVEREL 182 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~gde~~ieQI~kQLeKL---vdVikV~dlt~~~~V~REL 182 (514)
..|+||++.|+...|.+.|+||+.++.+.+++ ..-+++++.. ...++..+.|+++ +.+..+ .+.+.+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~i 340 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDDI 340 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCCe
Confidence 67899999999999999999999998876554 3457777754 3345566666663 222112 234567
Q ss_pred eeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 183 MLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 183 ~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
+++.|.... ...+.+ --.|++....++..|.-++....-+-++=+.+..+..++.|.
T Consensus 341 a~isvvG~~~~~~~g~--------~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 341 AKVSVVGVGMRSHPGV--------AAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred EEEEEECCCCCCCchH--------HHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 888885422 222222 013477777788888877544344444444555666666654
No 210
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.60 E-value=0.56 Score=54.86 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=51.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec----ChHHHHHHHHHHhcCcce
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG----TDKVLQQVMEQLQKLVNV 166 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g----de~~ieQI~kQLeKLvdV 166 (514)
....|.|+..|+||+|.+|+++|++.|+||.+-.+..+.+...=++.|.+ +++..+++.+.|.+.++|
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L~~ 856 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDALAV 856 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999999999999888877222221233332 456678888888776665
No 211
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=91.46 E-value=1.7 Score=43.84 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=60.3
Q ss_pred eEEEEEEEeCcch--HHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEE--eC-ChHHHHHHHHHHhcCccEEEEE
Q 047033 344 SHTLSMLVNDSPG--VLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVV--PA-TDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 344 khtLSIlVeN~pG--VL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV--~g-de~~ieQI~kQL~KLidVikV~ 416 (514)
.|++++.+.++++ +++++...+...+|.+.++.+.+.++++-..|+..+ .+ ++..+++++.+|.....|.+|.
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 6788999888665 699999999999999999999887666644455444 43 5788999999999999999886
No 212
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=91.43 E-value=1.7 Score=45.86 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=83.3
Q ss_pred EEEEEE---EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 101 HTISVF---VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 101 h~Isvl---VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
..+++. +.|+||++.|+...|.+.|+||+.++.+.++ .-+++++.. +..+++.+.|++...-.... .=.
T Consensus 261 a~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~--~d~~~a~~~L~~~~~~~~~~----~i~ 332 (401)
T TIGR00656 261 TRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE--TDADEAVRALKDQSGAAGLD----RVE 332 (401)
T ss_pred EEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH--HHHHHHHHHHHHHHHhcCCc----eEE
Confidence 356666 7899999999999999999999999876544 337777753 34556666666643221111 112
Q ss_pred HHhheeeEEEecCc-cccccccccccccchh-hHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 178 VERELMLIKVNADP-KFRAEIFLFPCLGVHL-QIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 178 V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~-~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
+++.+++|-|-... .++..+ + .+++.....+-.|.-++....-+-+.=+.+..+..++.|.
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~---------~a~i~~~L~~~gIni~~i~~s~~~is~vv~~~d~~~av~~Lh 395 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGV---------ASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLH 395 (401)
T ss_pred EeCCeEEEEEECCCcccCccH---------HHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHHH
Confidence 45678887775432 233333 1 2366667777888888766555555555666666666665
No 213
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=91.34 E-value=0.61 Score=38.54 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=42.3
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--H-HHHHHHHHHhcCcce
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--K-VLQQVMEQLQKLVNV 166 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~-~ieQI~kQLeKLvdV 166 (514)
-.+||++.+|.+.|++.|+|++-+..+. .-+++++..++ + .++.|++-|+|+-+|
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~s~----~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLISTSE----VHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEeCC----CEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 4569999999999999999999997522 44677766432 3 788999999885443
No 214
>PRK05092 PII uridylyl-transferase; Provisional
Probab=91.27 E-value=0.67 Score=54.54 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=49.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc-E--EEEEE-e----cChHHHHHHHHHHhcCcc
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA-L--FTIVV-Y----GTDKVLQQVMEQLQKLVN 165 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~--~TIVv-~----gde~~ieQI~kQLeKLvd 165 (514)
....|.|...|+||+|.+|+++|++.|+||.+..+. |.+.. . |.|.- + .++...+.|.+.|.+.++
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~-T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA-TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE-EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999998 44432 2 44432 1 234457778888876653
No 215
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=91.14 E-value=0.71 Score=35.46 Aligned_cols=51 Identities=24% Similarity=0.452 Sum_probs=39.1
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.+.||++.||...+++.|.|++.++-+..+ -+++++++. ...++..+.|++
T Consensus 12 ~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~----~~is~~v~~--~~~~~~~~~lh~ 62 (66)
T cd04922 12 AGTPGVAATFFSALAKANVNIRAIAQGSSE----RNISAVIDE--DDATKALRAVHE 62 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeH--HHHHHHHHHHHH
Confidence 467999999999999999999998776533 678888884 334555555554
No 216
>PRK06635 aspartate kinase; Reviewed
Probab=91.00 E-value=1.9 Score=45.45 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=80.1
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC---ccEEEEEecCCchhhhee
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL---IDLHEVRDLTHLPFAERE 427 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL---idVikV~dlt~~~~V~RE 427 (514)
..|+||+|.||...+.+.|+||+.++.+.+++ +...++++++. +..++..+.|+++ +.+..+ .+.+.
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~-~~~~is~~v~~--~~~~~a~~~L~~~~~~~~~~~i-------~~~~~ 339 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSED-GKTDITFTVPR--DDLEKALELLEEVKDEIGAESV-------TYDDD 339 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCC-CceeEEEEEcH--HHHHHHHHHHHHHHHHcCcceE-------EEcCC
Confidence 67899999999999999999999987775442 24457778763 3455666667663 222112 23556
Q ss_pred eEEEEEecC-----cccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 428 LMLIKVAVN-----TTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 428 L~LIKV~~~-----~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
++++.|... +..-.++++....++.+|.-++.....+-++=+.+..+..++.|.
T Consensus 340 ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss~~~is~vv~~~d~~~a~~~Lh 398 (404)
T PRK06635 340 IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALH 398 (404)
T ss_pred eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEecCCeEEEEEcHHHHHHHHHHHH
Confidence 788888432 122357888888888888887644444445555555666666654
No 217
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=91.00 E-value=1 Score=49.34 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=54.4
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEeCC-hHHHHHHHHHHhcCc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVPAT-DESISKLMQQLYKLI 410 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~gd-e~~ieQI~kQL~KLi 410 (514)
+-+|.+.+.|+||.|.+|..+|+.+|+|+..|.--|+... .-..+-|-++|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 5678888899999999999999999999999999886543 333455556676 478899999998876
No 218
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=90.94 E-value=0.33 Score=42.59 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=45.4
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT 395 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd 395 (514)
|++..+++.=.|+||+.+.|++++++.|.||. .++.|-..++-.|-+.|+-+
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIl--disQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNIL--DISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEE--EHHHHHHhhhceeeeEEcCC
Confidence 46889999999999999999999999999996 56777777887788888754
No 219
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.56 E-value=0.77 Score=35.19 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=39.7
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
.+.||++.++...+++.|.|++-++.+..+ -+++++++. ...+++.+-|++.
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~----~~isf~i~~--~~~~~~~~~Lh~~ 63 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGSSE----YNISFVVAE--DDGWAAVKAVHDE 63 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeH--HHHHHHHHHHHHH
Confidence 467999999999999999999998876643 557788873 3455566666554
No 220
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=90.18 E-value=1.2 Score=49.12 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=58.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--c-E-EEEEEecChHHHHHHHHHHhcCcceeeEe
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--A-L-FTIVVYGTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~-~-~TIVv~gde~~ieQI~kQLeKLvdVikV~ 170 (514)
.+-.|.+.+.|+||.|.++..+|+.+|+|+..|---|+... . . +=|-++|+...++++++.|.+..+.++|.
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 45577777799999999999999999999999988887543 2 3 44556788888999999999988876664
No 221
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.16 E-value=0.9 Score=34.89 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=38.9
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
+.+.||++.|+...+++.|.|++.++.+.++ -+++++++.+ ..++..+.|+|
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~----~~isf~v~~~--d~~~~~~~lh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE----ISIMIGVHNE--DADKAVKAIYE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc----cEEEEEEeHH--HHHHHHHHHHH
Confidence 3468999999999999999999999876643 5688888843 34444555554
No 222
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.01 E-value=0.83 Score=38.57 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--------HHHHHHHHHhc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--------SISKLMQQLYK 408 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--------~ieQI~kQL~K 408 (514)
..+.||++.+|...|++.|.|++-++.++ ..++++++.++. .++++...|+|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~------~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE------VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC------CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 45789999999999999999999996522 569999986543 34455555554
No 223
>PRK03381 PII uridylyl-transferase; Provisional
Probab=89.98 E-value=0.78 Score=53.11 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=46.1
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC---ChHHHHHHHHHHhcC
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA---TDESISKLMQQLYKL 409 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g---de~~ieQI~kQL~KL 409 (514)
-.+.|+..|+||++++|+|+|++.|+||.+-.+-. ..+..=.++.|.+ .....+++.+.|++.
T Consensus 600 ~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~ 665 (774)
T PRK03381 600 VEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRA 665 (774)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHH
Confidence 47999999999999999999999999999988864 3444445555543 212246666666654
No 224
>PRK03381 PII uridylyl-transferase; Provisional
Probab=89.77 E-value=0.71 Score=53.46 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=34.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHA 380 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~T 380 (514)
...|.|...|+||+|.+|+++|+..|+||.+..+...
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 3589999999999999999999999999999998887
No 225
>PLN02550 threonine dehydratase
Probab=89.73 E-value=8.3 Score=43.87 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
.+++.+.+.+-++||-|.+++.++..+ ||..+.--.... .+.+.+.++ .+.+.+++|+..|++.= +++.|+++.
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~l~~~g--~~~~~l~~~ 490 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVHTEQELQALKKRMESAQ--LRTVNLTSN 490 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEeCCCC
Confidence 456889999999999999999999987 999887766322 234555554 35678999999998854 688999887
Q ss_pred hhHHh-------he------eeEEEecCccccccccccccccchhhHHHHHHhcCCE--EEEec-----C-C---EEEEE
Q 047033 176 PQVER-------EL------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAK--IVDIS-----E-Y---SLTIE 231 (514)
Q Consensus 176 ~~V~R-------EL------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~ak--VVDvs-----~-~---s~~iE 231 (514)
+...- |- +|+.|..+ |.... ..+.++.++.+ |...+ + . -+=||
T Consensus 491 ~~~~~~LR~v~g~ra~~~~E~l~~v~fP-ErpGA------------l~~Fl~~lg~~~nITeF~YR~~~~~~a~vlvGi~ 557 (591)
T PLN02550 491 DLVKDHLRYLMGGRAIVKDELLYRFVFP-ERPGA------------LMKFLDAFSPRWNISLFHYRGQGETGANVLVGIQ 557 (591)
T ss_pred hHHhhhhhheeccccccCceEEEEEEec-CcCCH------------HHHHHHhhCCCCceeeEEeecCCCCCccEEEEEe
Confidence 66422 11 13444333 22222 35666666652 11110 0 1 13367
Q ss_pred EeCChhHHHHHHHHhccCCc
Q 047033 232 VTGDPGKMVAVQRNLSKFGI 251 (514)
Q Consensus 232 vTG~~~kIdafi~~L~~fGI 251 (514)
+. +++++.|++.|+..|.
T Consensus 558 v~--~~e~~~l~~~l~~~gy 575 (591)
T PLN02550 558 VP--PEEMQEFKSRANALGY 575 (591)
T ss_pred eC--HHHHHHHHHHHHHcCC
Confidence 75 4888899999988774
No 226
>PLN02317 arogenate dehydratase
Probab=89.58 E-value=1.6 Score=47.08 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=52.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC----------------cE-EEEEEecC--hHHHHHHHHHH
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK----------------AL-FTIVVYGT--DKVLQQVMEQL 160 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~----------------~~-~TIVv~gd--e~~ieQI~kQL 160 (514)
+-.|.+.++|+||.|.++..+|+.||+|+..|.--|.... .+ |-|-+++. +..++++++.|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 5677777899999999999999999999999988776433 12 33444443 66688888888
Q ss_pred hcCcceeeE
Q 047033 161 QKLVNVLKV 169 (514)
Q Consensus 161 eKLvdVikV 169 (514)
++.-.-++|
T Consensus 363 ~~~~~~lrv 371 (382)
T PLN02317 363 QEFATFLRV 371 (382)
T ss_pred HHhcCeEEE
Confidence 876554433
No 227
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=89.55 E-value=1 Score=52.47 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=84.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC------ChHHHHHHHHHHhcCccEEEEEe
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA------TDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g------de~~ieQI~kQL~KLidVikV~d 417 (514)
...+.|...|+||+|.+|++.|++.|+||.+-.+..|.+.-+--.-.|.+. +++..++|.+.|.+.++
T Consensus 668 ~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~------ 741 (850)
T TIGR01693 668 GTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA------ 741 (850)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc------
Confidence 457999999999999999999999999999999988877654444444332 12346666666655432
Q ss_pred cCCchhhheeeEEEEEecCcccHHHHHHHHHhcCc-EEEEe----cCCEEEEEEecC--HHHHHHHHHHhccCCc-EEEe
Q 047033 418 LTHLPFAERELMLIKVAVNTTARRDVLDIATIFRA-KAVDV----SDHTITLELTGD--LDKMVALQRLLEPYGI-CEVA 489 (514)
Q Consensus 418 lt~~~~V~REL~LIKV~~~~~~R~eI~~la~iFra-kIVDv----s~~si~iE~TG~--~~KIdafi~lL~pyGI-lEva 489 (514)
..... .+ .+.+-... .| +. ..|.- .-|.+ +++..++|++|. |+=+..+-+.|..+|+ ++.+
T Consensus 742 --~~~~~-~~-~~~~~~~~--~~----~~-~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a 810 (850)
T TIGR01693 742 --GLAKD-PD-TISARRAR--RR----RL-QHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSA 810 (850)
T ss_pred --CCCcc-cc-ccccccCC--cc----cc-cCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEE
Confidence 11000 00 01110000 01 00 12221 11222 456677787776 8889999999999997 7888
Q ss_pred ecceeE
Q 047033 490 RTGRVA 495 (514)
Q Consensus 490 RTG~vA 495 (514)
++...+
T Consensus 811 ~i~t~~ 816 (850)
T TIGR01693 811 KITTFG 816 (850)
T ss_pred EEEecC
Confidence 887754
No 228
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=89.55 E-value=1.3 Score=48.39 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=52.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEecC-hHHHHHHHHHHhcCc
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYGT-DKVLQQVMEQLQKLV 164 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~gd-e~~ieQI~kQLeKLv 164 (514)
+-.|.+.+.|+||.|.++..+|+.+|+|+.+|.--|+... . . +=|-++|. +..++++++.|.+..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 5678888899999999999999999999999998886543 2 2 44445554 477899999998876
No 229
>PRK02047 hypothetical protein; Provisional
Probab=89.33 E-value=4.1 Score=35.43 Aligned_cols=73 Identities=10% Similarity=0.160 Sum_probs=64.2
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCce--eeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYN--IQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyN--IeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
..+.+.+...|.++..+.|..++.++... -.++++-++....+-.+|+.+. -++++++.|-+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 46899999999999999999999998555 6678899999999999999887 5788999999999999888644
No 230
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=88.99 E-value=1.4 Score=32.65 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=39.2
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
..+.+|++.++...+++.|.|+..++.+..+ .+++++++. ...+.+.+.|+|.
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~----~~i~~~v~~--~~~~~~~~~l~~~ 62 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDE--DDADKAVKALHEE 62 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCCc----eeEEEEEeH--HHHHHHHHHHHHH
Confidence 3478999999999999999999988775522 457777773 4455666666654
No 231
>PRK08210 aspartate kinase I; Reviewed
Probab=88.82 E-value=6.1 Score=41.91 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=75.8
Q ss_pred EEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhh
Q 047033 346 TLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFA 424 (514)
Q Consensus 346 tLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V 424 (514)
.+++.-.|. ||.++||.+.|.+.|+||+.++.... .+++++.. ...+++.+.|+++- + .-.+
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~------~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~ 335 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT------EVVFTVSD--EDSEKAKEILENLG-------L--KPSV 335 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc------eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEE
Confidence 445554444 99999999999999999999977631 36677763 34566666666641 1 2235
Q ss_pred heeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 425 ERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 425 ~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+.+++|.|--.. ..-..+++.....+.+|+..+....-+-+.=+.+..+..++.|.
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 6778888886432 22356777777777788766544444444444444555555543
No 232
>PRK05007 PII uridylyl-transferase; Provisional
Probab=88.70 E-value=1.3 Score=52.06 Aligned_cols=66 Identities=11% Similarity=0.141 Sum_probs=49.4
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhcCc
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYKLI 410 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~KLi 410 (514)
-.+.|...|+||+|.+|+++|++.|+||.+-.+..+.+.-.--.-.|.+.+ ++.+++|.+.|.+.+
T Consensus 702 t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL 772 (884)
T PRK05007 702 TEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQAL 772 (884)
T ss_pred EEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 488999999999999999999999999999998887664444444443322 345566777766544
No 233
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.29 E-value=11 Score=36.59 Aligned_cols=136 Identities=21% Similarity=0.302 Sum_probs=84.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecC-hHHHHHHHHHHhcC-cceeeEeec
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGT-DKVLQQVMEQLQKL-VNVLKVEDL 172 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gd-e~~ieQI~kQLeKL-vdVikV~dl 172 (514)
+|+-++.+-..|+||=|-++..=++.-|-||-++.=...+.. .+ +.|++.+| +.....+.+-+++. +.++++...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~~Gi~I~~~dg~ 82 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEEEGIIIIRFDGA 82 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHHHhCCcEEEEecCc
Confidence 588899999999999999999999999999988775544322 23 77888887 55566666666332 344443221
Q ss_pred CChhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEec--------CCE--EEEEEeCChhHHHHH
Q 047033 173 SNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS--------EYS--LTIEVTGDPGKMVAV 242 (514)
Q Consensus 173 t~~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs--------~~s--~~iEvTG~~~kIdaf 242 (514)
. ...+--..||-=-+...-+. .|..+-..=+|.|+|++ +.+ ++++..| .++++..
T Consensus 83 ~--~~~~~~vvLIGhiv~tdiqD------------TId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~-~e~l~ea 147 (170)
T COG2061 83 R--LREKTDVVLIGHIVHTDIQD------------TIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVG-KEKLDEA 147 (170)
T ss_pred C--cceeEeEEEEEeeecCcHHH------------HHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcC-hhHHHHH
Confidence 1 11111223332111111111 35788888899999985 233 4555555 5667766
Q ss_pred HHHhcc
Q 047033 243 QRNLSK 248 (514)
Q Consensus 243 i~~L~~ 248 (514)
++.|+.
T Consensus 148 ~~~l~e 153 (170)
T COG2061 148 LRRLKE 153 (170)
T ss_pred HHHHHH
Confidence 666653
No 234
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=88.25 E-value=3.9 Score=41.24 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=59.2
Q ss_pred ceEEEEEEEEeCchh--HHHHHHHHHhccCceeeeEEeeecCCCc--EEEEE--Eec-ChHHHHHHHHHHhcCcceeeEe
Q 047033 98 VRRHTISVFVGDESG--MINRIAGVFARRGYNIESLAVGLNKDKA--LFTIV--VYG-TDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 98 ~~~h~IsvlVeN~pG--VLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIV--v~g-de~~ieQI~kQLeKLvdVikV~ 170 (514)
...|.+.+.+.++++ +..++...+...+|.+.++.+.+.++++ .++.. ..+ ++..+++++.+|.....|.+|.
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 356788888888664 6999999999999999999998765554 35443 443 6788999999999999999886
Q ss_pred e
Q 047033 171 D 171 (514)
Q Consensus 171 d 171 (514)
=
T Consensus 220 W 220 (225)
T PRK15385 220 W 220 (225)
T ss_pred E
Confidence 3
No 235
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.24 E-value=1.5 Score=34.83 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=40.0
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
+.||++.|+...+++.|+||.-++-|.++. +++++++. +..++.++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~----sis~~v~~--~~~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV----NISLIVND--SEAEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc----eEEEEEeH--HHHHHHHHHHHH
Confidence 468999999999999999999999888754 58888884 455666666654
No 236
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.01 E-value=1.5 Score=36.93 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=37.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH--------HHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK--------VLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~--------~ieQI~kQLeK 162 (514)
..++||++.+|...|++.|+||+-++.+. .-+++++..++. .++++.+-|+|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs~----~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATSE----VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEecC----CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 46789999999999999999999997522 447777765442 34455555554
No 237
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.96 E-value=1.4 Score=34.14 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=37.3
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
.+.||++.|+...|++.|+|++.++.+..+ ..+.+++..++ .+++.+.|+|
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~~~--~~~a~~~lh~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDEKD--AVKALNIIHT 62 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999999876633 45777776533 3444444443
No 238
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=87.81 E-value=1.5 Score=32.48 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=36.8
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
..+++|++.++...|++.|+|++.++.+.. ...+++++.. ...+++.+.|+|
T Consensus 10 ~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~--~~~i~~~v~~--~~~~~~~~~l~~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS--EVNISFVVDE--DDADKAVKALHE 61 (65)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcCCC--ceeEEEEEeH--HHHHHHHHHHHH
Confidence 457899999999999999999998876552 2335566654 334555555554
No 239
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=87.65 E-value=1.4 Score=51.52 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=77.7
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHHhcCccEEEEEecC
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL~KLidVikV~dlt 419 (514)
-.+.|...|+||+|.+|+++|++.|+||.+=.+..+.+.-+--.-.|.+.+ ++.+++|.+.|.+.++-..
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~----- 752 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK----- 752 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-----
Confidence 489999999999999999999999999999888776665444444443322 3456667777766553210
Q ss_pred CchhhheeeEEEEEecCcccHHHHHHHHHhcC--cEEE---EecCCEEEEEEecC--HHHHHHHHHHhccCCc-EEEeec
Q 047033 420 HLPFAERELMLIKVAVNTTARRDVLDIATIFR--AKAV---DVSDHTITLELTGD--LDKMVALQRLLEPYGI-CEVART 491 (514)
Q Consensus 420 ~~~~V~REL~LIKV~~~~~~R~eI~~la~iFr--akIV---Dvs~~si~iE~TG~--~~KIdafi~lL~pyGI-lEvaRT 491 (514)
+...+ + + .+. + ...|. .+|. +.++++.+||+... ++=+-.+-+.|..+|+ +..||=
T Consensus 753 --~~~~~---~-~--~~~--~------~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI 816 (854)
T PRK01759 753 --LKKLN---L-E--ENH--K------LQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKI 816 (854)
T ss_pred --Ccchh---c-c--ccc--c------ccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEE
Confidence 00000 0 1 010 0 01121 1221 23566677777765 6677777778888886 566654
Q ss_pred c
Q 047033 492 G 492 (514)
Q Consensus 492 G 492 (514)
.
T Consensus 817 ~ 817 (854)
T PRK01759 817 T 817 (854)
T ss_pred c
Confidence 3
No 240
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=87.63 E-value=6.6 Score=43.09 Aligned_cols=123 Identities=18% Similarity=0.226 Sum_probs=85.3
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HH-HHHHHHHHhcCccEEEEEecCCchh
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ES-ISKLMQQLYKLIDLHEVRDLTHLPF 423 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~-ieQI~kQL~KLidVikV~dlt~~~~ 423 (514)
.-.....+++|++.||.+..++.|+|++-+..+.+++. |++++++++ .. .+.+.+....+.. +-.
T Consensus 312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~----i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~ 378 (447)
T COG0527 312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS----ISFTVPESDAPRALRALLEEKLELLA---------EVE 378 (447)
T ss_pred EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe----EEEEEchhhHHHHHHHHHHHHhhhcc---------eEE
Confidence 33344455679999999999999999999998887765 999998654 22 2233333222322 223
Q ss_pred hheeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 424 AERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 424 V~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
+++.+++|-+--.. .--.++++-...++-+|.-++...+.|-+.=+.+..+..++.|-
T Consensus 379 ~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH 441 (447)
T COG0527 379 VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH 441 (447)
T ss_pred eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence 46678888774332 22367888888899999999977777777777777777776653
No 241
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=87.26 E-value=1.4 Score=35.45 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=35.6
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY 407 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~ 407 (514)
|.||+++|++..++.-|+||.-++ |+ ..+.+.|+ ++.+++.++-|+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is---S~----~~~~ilV~--~~~~~~A~~~L~ 64 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS---SE----ISISILVK--EEDLEKAVEALH 64 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE---ES----SEEEEEEE--GGGHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE---Ee----eeEEEEEe--HHHHHHHHHHhc
Confidence 599999999999999999998887 32 45788887 456666666655
No 242
>PRK08210 aspartate kinase I; Reviewed
Probab=86.91 E-value=8.8 Score=40.76 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033 102 TISVFVGDE-SGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVER 180 (514)
Q Consensus 102 ~IsvlVeN~-pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~R 180 (514)
.|++.-.|. ||.++||.+.|.+.|+||+.++.... -+++++.. ...+++.+.|+++- + .-.+.+
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~----~is~~v~~--~~~~~a~~~l~~~~-------~--~v~~~~ 337 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT----EVVFTVSD--EDSEKAKEILENLG-------L--KPSVRE 337 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc----eEEEEEcH--HHHHHHHHHHHHhC-------C--cEEEeC
Confidence 445554454 99999999999999999999977622 34555543 33556666666631 1 223466
Q ss_pred heeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 181 ELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 181 EL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.+++|.|-... ..+..++ -.+++.....+-+|...+....-+-+.=+.+..+..++.|.
T Consensus 338 ~~a~isvvG~~~~~~~g~~--------~~i~~aL~~~~I~i~~~~~s~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVM--------AKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred CcEEEEEEcCCcCCCccHH--------HHHHHHHHhCCCCEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 78888886532 2334430 02355556667777765544333333334444555555554
No 243
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=86.72 E-value=1.7 Score=33.28 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=37.3
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe 161 (514)
..+.||++.|+...+++.|+|++.++.+..+ ..+++++..++ .+++.+.|.
T Consensus 11 ~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~~--~~~~~~~lh 61 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDEDD--ATKALRAVH 61 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHH
Confidence 4578999999999999999999999876532 45777776533 344444444
No 244
>PRK08639 threonine dehydratase; Validated
Probab=86.59 E-value=4.4 Score=43.49 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=60.5
Q ss_pred eeEEEEEEEeCcchHHHHHHH-HhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTG-VFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItg-LFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
+...+++...++||-|.++.. +++.++ ||..+.--.....+..++.++++. +.+.++++..+|++.= .++.++++
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 411 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDINP 411 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECCC
Confidence 468999999999999999999 555555 999986654445556678888874 4468999999999864 35566677
Q ss_pred chhhh
Q 047033 421 LPFAE 425 (514)
Q Consensus 421 ~~~V~ 425 (514)
.+.+.
T Consensus 412 ~~~~~ 416 (420)
T PRK08639 412 NEPLY 416 (420)
T ss_pred CHHHH
Confidence 66554
No 245
>PRK08526 threonine dehydratase; Provisional
Probab=86.12 E-value=3.4 Score=44.41 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=55.7
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC---CCCeeEEEEEEe-CChHHHHHHHHHHhcC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE---TEGLSRITTVVP-ATDESISKLMQQLYKL 409 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te---~~~iSRiTIVV~-gde~~ieQI~kQL~KL 409 (514)
+.+.+.+.+.++||-|.+++.++++.|-||..+.-.... ..+-.+++++++ -+.+.+++|...|++.
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 478999999999999999999999999999998885533 236678888887 3567899999998654
No 246
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=86.02 E-value=1.9 Score=34.81 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=31.0
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA 394 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g 394 (514)
..|.||++++|.+.++++|.||+-++.. .+ .++++++.
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~-----~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE-----EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-----CEEEEEch
Confidence 3478999999999999999999999554 22 38888874
No 247
>PRK09084 aspartate kinase III; Validated
Probab=85.92 E-value=14 Score=40.33 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=74.4
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH-------HHHHHHHHHhcCccEEEEEecCCchhhh
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE-------SISKLMQQLYKLIDLHEVRDLTHLPFAE 425 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~-------~ieQI~kQL~KLidVikV~dlt~~~~V~ 425 (514)
++||+++||...|.+.|+||+-++.++ ..++++++.++. ..+.+.+.|+++-. -.+.
T Consensus 318 ~~~g~~a~if~~l~~~~I~Vd~I~sse------~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~----------i~~~ 381 (448)
T PRK09084 318 HARGFLAEVFGILARHKISVDLITTSE------VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR----------VEVE 381 (448)
T ss_pred ccccHHHHHHHHHHHcCCeEEEEeccC------cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe----------EEEE
Confidence 689999999999999999999998532 469999986542 23566666654211 1246
Q ss_pred eeeEEEEEecCcc-cH----HHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 426 RELMLIKVAVNTT-AR----RDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 426 REL~LIKV~~~~~-~R----~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
+.+++|.|--..- ++ ..++......+-.++..+...+.|-+.=+.+..+..++.|.
T Consensus 382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH 442 (448)
T PRK09084 382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQALH 442 (448)
T ss_pred CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHH
Confidence 7799999865432 22 34454444446677776666666655555565666665553
No 248
>PRK05007 PII uridylyl-transferase; Provisional
Probab=85.78 E-value=2.3 Score=50.01 Aligned_cols=66 Identities=18% Similarity=0.324 Sum_probs=47.1
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C---ChHHHHHHHHHHhcCc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A---TDESISKLMQQLYKLI 410 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g---de~~ieQI~kQL~KLi 410 (514)
...|.|.+.|+||+|.+|+.+|.+-|+||.+--+..-.+ ..--.-.|.+ | +++..+.|.++|..-+
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge-ra~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE-RVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc-eEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999977776433 3333334433 2 2445666666665443
No 249
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=85.73 E-value=0.81 Score=40.23 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=47.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEE--EEecC--hHHHHH----HHHHHhcCcceeeE
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTI--VVYGT--DKVLQQ----VMEQLQKLVNVLKV 169 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TI--Vv~gd--e~~ieQ----I~kQLeKLvdVikV 169 (514)
+++..|+|.=+||||+.+.|+++|++-|.||..++ .|--.+++|+ .|+.+ ...... +.+..++|==-+.|
T Consensus 1 ~~~avITV~GkDr~GIva~is~vLAe~~vNIldis--Qtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V~v 78 (90)
T COG3830 1 KMRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS--QTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDVRV 78 (90)
T ss_pred CceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH--HHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEEEE
Confidence 36789999999999999999999999999998655 4444455554 34432 223333 44445555333334
Q ss_pred e
Q 047033 170 E 170 (514)
Q Consensus 170 ~ 170 (514)
+
T Consensus 79 q 79 (90)
T COG3830 79 Q 79 (90)
T ss_pred e
Confidence 4
No 250
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=85.67 E-value=2.2 Score=50.26 Aligned_cols=65 Identities=11% Similarity=0.269 Sum_probs=47.9
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEE-ec----ChHHHHHHHHHHhcCc
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVV-YG----TDKVLQQVMEQLQKLV 164 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv-~g----de~~ieQI~kQLeKLv 164 (514)
.-.|.|+..|+||+|.+|+++|++.|+||.+-.+..+.+... |.|.- +| ++...++|.+.|.+.+
T Consensus 814 ~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L 885 (895)
T PRK00275 814 VTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQL 885 (895)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999877733222 33332 12 2345677777776544
No 251
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=85.66 E-value=2 Score=38.31 Aligned_cols=65 Identities=20% Similarity=0.400 Sum_probs=52.8
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCc-E----EEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKA-L----FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~----~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
+-|.+|..|..+-...|..+.+++.++....+ + ++|.+.|+=..+-+.+++|+++-.++.|++++
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~ 120 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLS 120 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeE
Confidence 45889999999999999999999999755443 2 78889999999999999999999999999886
No 252
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=85.21 E-value=5.3 Score=42.90 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=61.8
Q ss_pred eeEEEEEEEeCcchHHHHHHH-HhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTG-VFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItg-LFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
+...+++.+-++||-|.++.. +++.++ ||..+.-......+..++.++++. +.+.++++.+.|++.= .++.++++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~ 400 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPND-DITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINE 400 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCC
Confidence 468999999999999999999 555555 999777665556677888888874 4578899999998864 35567777
Q ss_pred chhhh
Q 047033 421 LPFAE 425 (514)
Q Consensus 421 ~~~V~ 425 (514)
.+.+.
T Consensus 401 ~~~~~ 405 (409)
T TIGR02079 401 NDILY 405 (409)
T ss_pred CHHHH
Confidence 66554
No 253
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=85.09 E-value=6.8 Score=40.79 Aligned_cols=146 Identities=20% Similarity=0.253 Sum_probs=86.6
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CC--eeEEEEEEeCChHHHHHHHHHHhcCccEEEEE-e
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EG--LSRITTVVPATDESISKLMQQLYKLIDLHEVR-D 417 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~--iSRiTIVV~gde~~ieQI~kQL~KLidVikV~-d 417 (514)
++..+|.+-..++||+.++|++...++|.||..-.-- +.. .+ +-|+.+-..+.....+++...+..+.+=.... .
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf-~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~ 83 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF-DDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWR 83 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc-cccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeE
Confidence 4578999999999999999999999999999876665 222 22 45556665565445666666665544411100 0
Q ss_pred cCCchhhheeeEEEEEe-----------------------cCcccHHHHHHHHHhcCcEEEEecCCEEEEEEec--CHHH
Q 047033 418 LTHLPFAERELMLIKVA-----------------------VNTTARRDVLDIATIFRAKAVDVSDHTITLELTG--DLDK 472 (514)
Q Consensus 418 lt~~~~V~REL~LIKV~-----------------------~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG--~~~K 472 (514)
+.......| ++|-|+ +--.+-.+...+++-|+----.+. +|. .++.
T Consensus 84 ~~~~~~~~r--i~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip-------~~~~~k~e~ 154 (287)
T COG0788 84 LHDAAQRKR--IAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIP-------VTKENKAEA 154 (287)
T ss_pred EeccccCce--EEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeecc-------CCCCcchHH
Confidence 111112222 122221 112344566667777765433333 333 3666
Q ss_pred HHHHHHHhccCCcEEEeecceeEeeccCCcc
Q 047033 473 MVALQRLLEPYGICEVARTGRVALVRESGVD 503 (514)
Q Consensus 473 Idafi~lL~pyGIlEvaRTG~vAl~Rg~~~~ 503 (514)
=+..+++++.|| +-.|-|+|=.++-
T Consensus 155 E~~~~~ll~~~~------~DlvVLARYMqIL 179 (287)
T COG0788 155 EARLLELLEEYG------ADLVVLARYMQIL 179 (287)
T ss_pred HHHHHHHHHHhC------CCEEeehhhHhhC
Confidence 778899999998 3345566665543
No 254
>PRK04374 PII uridylyl-transferase; Provisional
Probab=84.80 E-value=2.6 Score=49.67 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=47.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--C---ChHHHHHHHHHHhcCc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--A---TDESISKLMQQLYKLI 410 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--g---de~~ieQI~kQL~KLi 410 (514)
..+|.|.+.|+||+|.+|++.|+..|.||.+-.+... +..+--.-.|.+ | ++...++|.+.|.+-+
T Consensus 796 ~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 796 RTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GERAEDQFQITDEHDRPLSESARQALRDALCACL 866 (869)
T ss_pred eEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999988888 433333333333 2 1233367777665544
No 255
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.72 E-value=2.4 Score=32.46 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=37.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
..+.+|++.++...+++.|+|++-++.+..+ ..+++++..++ .+++.+.|++
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~~--~~~~~~~Lh~ 62 (66)
T cd04924 11 MRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAEDD--GWAAVKAVHD 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH--HHHHHHHHHH
Confidence 3467999999999999999999999876543 44667776432 4444555544
No 256
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.72 E-value=3 Score=31.42 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=36.9
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
..+.||++.++...+++.|.|++.++.. + .+++++++. ...+++.+-|++
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s-----~-~~is~~v~~--~~~~~~~~~l~~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS-----E-IKISCLVDE--DDAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc-----C-CeEEEEEeH--HHHHHHHHHHHH
Confidence 3477999999999999999999999742 1 458888873 344445555544
No 257
>PRK04998 hypothetical protein; Provisional
Probab=84.60 E-value=9.5 Score=32.77 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=60.1
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVik 414 (514)
..|++.+...+.++.++.|..+|.+..-.-+.+++-++-...+-.+|+.+. -+++.++.|-+.|.+...|+-
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~m 86 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVRM 86 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEEE
Confidence 368999999999999999999997764333446777888888988998887 578899999999999988863
No 258
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=84.37 E-value=4 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=36.2
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
..+.||++.|+.+.+++.|+|++.++.. +..+++++..+ ..+++.+-|+|
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~~--d~~~~~~~l~~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMISTS----EIKISCLIDED--DAEKAVRALHE 59 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEcc----CceEEEEEeHH--HHHHHHHHHHH
Confidence 4578999999999999999999999832 24577777643 33444555444
No 259
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=84.20 E-value=2.2 Score=44.32 Aligned_cols=206 Identities=20% Similarity=0.254 Sum_probs=118.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEe--cChHHHHHHHHHHhcCcceeeEe-ec
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVY--GTDKVLQQVMEQLQKLVNVLKVE-DL 172 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~--gde~~ieQI~kQLeKLvdVikV~-dl 172 (514)
++..+|.+-..++||+.++|+|.+.+.|.||..-..-...+.++ |.+... +.....+++...+..+.+=.... .+
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~~~~ 84 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMDWRL 84 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCceeEE
Confidence 46789999999999999999999999999999877662222344 566655 33345677777776654411111 01
Q ss_pred CChhhHHhheeeEEEecCc-------------cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeC--Chh
Q 047033 173 SNEPQVERELMLIKVNADP-------------KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTG--DPG 237 (514)
Q Consensus 173 t~~~~V~REL~LiKV~~~~-------------~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG--~~~ 237 (514)
.+.....| +++-|+-.. +-..||..- ..-|.+...+++.|+----. |-++. +++
T Consensus 85 ~~~~~~~r--i~i~VSK~~HCL~DLL~r~~~g~L~~eI~~V--IsNH~dl~~~v~~~~IPfhh-------ip~~~~~k~e 153 (287)
T COG0788 85 HDAAQRKR--IAILVSKEDHCLGDLLYRWRIGELPAEIVAV--ISNHDDLRPLVERFDIPFHH-------IPVTKENKAE 153 (287)
T ss_pred eccccCce--EEEEEechHHHHHHHHHHHhcCCcCCceEEE--EcCCHHHHHHHHHcCCCeee-------ccCCCCcchH
Confidence 11222222 233332211 111122100 25666778899999854333 33443 477
Q ss_pred HHHHHHHHhccCCcEEEeeccceeeecccccCCCcc-cccc-------ccCCCCCCCCCcccccccccccccc-------
Q 047033 238 KMVAVQRNLSKFGIREIARTGKIALRREKLGASAPF-WRFS-------AASYPDLNETPTIDGLVGAGHRPLL------- 302 (514)
Q Consensus 238 kIdafi~~L~~fGIlEvaRTG~iAl~R~~~~~~~~~-~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~~------- 302 (514)
.=+..+++++.||+ -.+-|+|=..-++.-| .+|. -.=-|.+..+.|-.-...++++-..
T Consensus 154 ~E~~~~~ll~~~~~------DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRGVKlIGATAHYVT 227 (287)
T COG0788 154 AEARLLELLEEYGA------DLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERGVKLIGATAHYVT 227 (287)
T ss_pred HHHHHHHHHHHhCC------CEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcCCeEeeeeeeecc
Confidence 77789999999993 3455777655555443 1111 1225777776655555666666332
Q ss_pred CCCCC---CCCceEecCCCCC
Q 047033 303 SETDT---VEGDVYPVEPSDG 320 (514)
Q Consensus 303 ~~~~~---~~gdvy~v~~~~~ 320 (514)
..-++ -..||.+|....+
T Consensus 228 ~dLDeGPIIeQdv~rV~H~~s 248 (287)
T COG0788 228 ADLDEGPIIEQDVIRVDHAYS 248 (287)
T ss_pred CCCCCCCceeeeeeecCccCC
Confidence 11111 3678888776653
No 260
>PLN02551 aspartokinase
Probab=84.12 E-value=13 Score=41.70 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--------HHHHHHHHHhcCccEEEEEecCCchhh
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--------SISKLMQQLYKLIDLHEVRDLTHLPFA 424 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--------~ieQI~kQL~KLidVikV~dlt~~~~V 424 (514)
++||+++||.+.|.+.|+||+-++.+ + ..++++++.++. .++++...|++.. . -.+
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e----~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~---~-------V~v 441 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E----VSISLTLDPSKLWSRELIQQELDHLVEELEKIA---V-------VNL 441 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C----CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCC---e-------EEE
Confidence 68999999999999999999999643 2 358899986542 2333444444321 1 124
Q ss_pred heeeEEEEEecCcccH----HHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033 425 ERELMLIKVAVNTTAR----RDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 425 ~REL~LIKV~~~~~~R----~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+++++|-|--..... ..+++.....+.+|.-++ ...+-|-+.=+.+..+..++.|.
T Consensus 442 ~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH 504 (521)
T PLN02551 442 LQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 504 (521)
T ss_pred eCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHH
Confidence 5678888886442222 355666666677784444 44445555545555555555554
No 261
>PRK04374 PII uridylyl-transferase; Provisional
Probab=84.07 E-value=3.1 Score=49.03 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=46.7
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CC-hHHHHHHHHHHhcC
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--AT-DESISKLMQQLYKL 409 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gd-e~~ieQI~kQL~KL 409 (514)
..+.|...|+||++++|+|+|++.|+||.+-.+-.+.+.-+--.-.|.+ |. ++..+++.+.|++.
T Consensus 691 ~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~ 758 (869)
T PRK04374 691 LEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQV 758 (869)
T ss_pred EEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Confidence 4789999999999999999999999999998887776554433333333 21 33455566665543
No 262
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=83.79 E-value=17 Score=42.88 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=73.9
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHHhcCccEEEEEecCCchhhhe
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQLYKLIDLHEVRDLTHLPFAER 426 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL~KLidVikV~dlt~~~~V~R 426 (514)
.+.||+++||.+.|++.|.||+-++.+ + ..++++++..+ +.++++.++|.++-.|. +.+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~ss--e----~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~ 396 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSS--E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIV 396 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcC--C----CEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeC
Confidence 378999999999999999999988543 2 55888888543 45677777776533322 235
Q ss_pred eeEEEEEecCcc-c----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 427 ELMLIKVAVNTT-A----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 427 EL~LIKV~~~~~-~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+++|-|--..- + -..+++.....+..++..+...+.|-+.=+.+..+..++.|.
T Consensus 397 ~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH 456 (861)
T PRK08961 397 PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456 (861)
T ss_pred CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHH
Confidence 578887754321 2 235555555567778888766555555545555555554443
No 263
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.72 E-value=3.1 Score=31.86 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=37.2
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
+.+.||++.|+...+++.|+|++-++.+.++ ..+++++..++ .+++.+.|+|
T Consensus 11 ~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~~d--~~~~~~~lh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHNED--ADKAVKAIYE 62 (66)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHHH--HHHHHHHHHH
Confidence 4568999999999999999999999876533 45777776533 3344444433
No 264
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=83.42 E-value=3.2 Score=33.32 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=39.5
Q ss_pred cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 354 SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 354 ~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
+||++.|+...+++.|+|+.-++-|+++. +++++|+ ++..++.++.|++
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~----~is~~V~--~~~~~~av~~Lh~ 62 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNV----DVQFVVD--RDDYDNAIKALHA 62 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCee----EEEEEEE--HHHHHHHHHHHHH
Confidence 78999999999999999999998888643 5888887 4566666666654
No 265
>PRK00907 hypothetical protein; Provisional
Probab=83.32 E-value=8.8 Score=33.74 Aligned_cols=73 Identities=12% Similarity=0.112 Sum_probs=63.6
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCc--eeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGY--NIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGy--NIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
..+.|.|.-.+++++...|..++.+.+- +=.++++-++....+-.+|+++. .+.++++.|-+.|.+.-.|.-|
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vkmv 91 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVKWT 91 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 4689999999999999999999998865 56788889999999999999987 5678899999999999888543
No 266
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=83.09 E-value=3.7 Score=32.32 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=36.7
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
.+.||++.|+...+.+.|+|+..++- +| .++.++++ ++..+++++.|++-
T Consensus 12 ~~~~gi~~~if~aL~~~~I~v~~~~~--Se----~~is~~v~--~~~~~~av~~Lh~~ 61 (64)
T cd04937 12 RGVPGVMAKIVGALSKEGIEILQTAD--SH----TTISCLVS--EDDVKEAVNALHEA 61 (64)
T ss_pred cCCcCHHHHHHHHHHHCCCCEEEEEc--Cc----cEEEEEEc--HHHHHHHHHHHHHH
Confidence 46899999999999999999974442 21 35888887 45566666666653
No 267
>PRK14434 acylphosphatase; Provisional
Probab=83.01 E-value=2.9 Score=36.32 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred cHHHHHHHHHhcC---cEEEEecCCEEEEEEecCH-HHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR---AKAVDVSDHTITLELTGDL-DKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr---akIVDvs~~si~iE~TG~~-~KIdafi~lL~p 482 (514)
-|.-+.++|+.++ +.|-...+.++.+++.|++ +++++|++.|+.
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 3889999999999 9999999999999999997 699999999975
No 268
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.90 E-value=3.2 Score=35.31 Aligned_cols=60 Identities=17% Similarity=0.373 Sum_probs=47.5
Q ss_pred EEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC---hHHHHHHHHHHhcCccEEEE
Q 047033 350 LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT---DESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 350 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd---e~~ieQI~kQL~KLidVikV 415 (514)
+..++.|.+.|+..+|.+.|.++|-+.. |+-.|+++++.+ ++..++|++.|++-.+.-++
T Consensus 10 ~Mn~evGF~rk~L~I~E~~~is~Eh~PS------GID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 10 LMNREVGFGRKLLSILEDNGISYEHMPS------GIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred hccchhcHHHHHHHHHHHcCCCEeeecC------CCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 3578899999999999999999998754 455699999976 55888888888886554333
No 269
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=82.26 E-value=2.1 Score=34.39 Aligned_cols=54 Identities=28% Similarity=0.343 Sum_probs=35.9
Q ss_pred EEEEEEEe----CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033 101 HTISVFVG----DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 101 h~IsvlVe----N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe 161 (514)
..|++.-. |.||+++|++..++..|+||--++ ++. .+.+.|..+ .+++.++-|+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~--~~~ilV~~~--~~~~A~~~L~ 64 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEI--SISILVKEE--DLEKAVEALH 64 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESS--EEEEEEEGG--GHHHHHHHHH
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---Eee--eEEEEEeHH--HHHHHHHHhc
Confidence 34444444 599999999999999999998777 432 355556543 3555555544
No 270
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=82.16 E-value=4.1 Score=47.89 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=35.0
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK 139 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~ 139 (514)
-.|.|+..|+||++.+|+|+|++.|+||.+=.+..+.+.
T Consensus 678 t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g 716 (854)
T PRK01759 678 TEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDG 716 (854)
T ss_pred EEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCC
Confidence 489999999999999999999999999999888766554
No 271
>PRK09034 aspartate kinase; Reviewed
Probab=81.72 E-value=20 Score=39.14 Aligned_cols=116 Identities=9% Similarity=0.159 Sum_probs=72.4
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHH--H-HHHHHHHhcCccEEEEEecCCchhhheeeE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDES--I-SKLMQQLYKLIDLHEVRDLTHLPFAERELM 429 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~--i-eQI~kQL~KLidVikV~dlt~~~~V~REL~ 429 (514)
.+||+++||.+.|++.|.|++-++ .+...++++++.++.. . ..+.+.|++-..+..| .+.+.++
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~------ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va 386 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP------SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLA 386 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc------CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEE
Confidence 368999999999999999999983 2224588999854321 1 5566666654433222 3466788
Q ss_pred EEEEecC-----cccHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033 430 LIKVAVN-----TTARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 430 LIKV~~~-----~~~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~ 481 (514)
+|.+.-. +..-..+++.....+.+|.-++ .....+-++=+.+..+..++.|.
T Consensus 387 ~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH 445 (454)
T PRK09034 387 IIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIY 445 (454)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHH
Confidence 9988432 1223578888888888885553 22233434444444554455543
No 272
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.67 E-value=5.5 Score=32.03 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=32.7
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA 394 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g 394 (514)
..+.+|++.++...+++.|.|++.++.+..+ .+++++++.
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~----~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE----HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc----ceEEEEEeH
Confidence 4568999999999999999999999887433 267788874
No 273
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=81.46 E-value=4.5 Score=29.22 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHH
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQL 406 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL 406 (514)
+.||.+.++...+++.|+||+.++.+.. + ..++++++. +..+++.+-|
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~---~-~~~s~~v~~--~~~~~~~~~l 59 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---E-VNISFTVDE--SDLEKAVKAL 59 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC---c-EEEEEEEeH--HHHHHHHHHh
Confidence 4789999999999999999999988764 2 457777773 3455555443
No 274
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=80.93 E-value=6.6 Score=32.02 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=34.6
Q ss_pred HHHHHHhcCCE-------EEEec---CCEEEEEEeCChhHHHHHHHHhccCCc-EEE
Q 047033 209 IRWLVDIFRAK-------IVDIS---EYSLTIEVTGDPGKMVAVQRNLSKFGI-REI 254 (514)
Q Consensus 209 i~~l~~~F~ak-------VVDvs---~~s~~iEvTG~~~kIdafi~~L~~fGI-lEv 254 (514)
|.++++.|+.. |-.+. -..+++|++|++++++++++.|+..|+ .|.
T Consensus 19 is~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 19 ISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp HHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence 48888888654 44433 356999999999999999999999996 343
No 275
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=80.88 E-value=11 Score=37.83 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~ 416 (514)
|.+.+..++. -+..+...|.+.++.+.++.....++++.-.+++.++ .+...+++..+|.++.+|.+|.
T Consensus 145 ~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 145 YHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH-ATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred EEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC-CCCCHHHHHHHHhcCCCceEEE
Confidence 5555555444 3688889999999999999988776666666677777 4577899999999999999885
No 276
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=80.60 E-value=15 Score=39.51 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=73.8
Q ss_pred chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc---CccEEEEEecCCchhhheeeEEE
Q 047033 355 PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK---LIDLHEVRDLTHLPFAERELMLI 431 (514)
Q Consensus 355 pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K---LidVikV~dlt~~~~V~REL~LI 431 (514)
||++.||...|.+.|+||+.++.+..+ ..++++++.+ ..+...+.|.+ ...+..| .+.+.+++|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se----~sIs~~I~~~--~~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~V 381 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE----TSISFTVDKE--DADQAKTLLKSELNLSALSSV-------EVEKGLAKV 381 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC----ceEEEEEEHH--HHHHHHHHHHHHHHhcCcceE-------EEcCCeEEE
Confidence 899999999999999999999754443 2378888743 34444444443 2233222 245678888
Q ss_pred EEecC-----cccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 432 KVAVN-----TTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 432 KV~~~-----~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.|... +..-.++++.....+-.|.-++.....+-++=+.+..+..++.|.
T Consensus 382 svvG~~~~~~~g~~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh 436 (441)
T TIGR00657 382 SLVGAGMKSAPGVASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLH 436 (441)
T ss_pred EEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHH
Confidence 88432 222367888888888888877544444555555566666666654
No 277
>PRK06291 aspartate kinase; Provisional
Probab=80.51 E-value=11 Score=41.05 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK 432 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIK 432 (514)
+.||+++|+...|++.|+|++-++.+..+ ..++++++.+ ..++.++.|++...=. .-..=.+.+++++|.
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse----~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Is 402 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE----SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVA 402 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEE
Confidence 78999999999999999999999876544 4588888843 3445555555432100 011123456789998
Q ss_pred EecCcc-----cHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhc
Q 047033 433 VAVNTT-----ARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 433 V~~~~~-----~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~ 481 (514)
|.-..- .-..++......+.+|.-++ .....|-+.=+.+..+..++.|.
T Consensus 403 vvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh 458 (465)
T PRK06291 403 VVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLH 458 (465)
T ss_pred EEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHH
Confidence 865432 12466666677777886554 44445555555666666666654
No 278
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=80.42 E-value=14 Score=40.70 Aligned_cols=127 Identities=19% Similarity=0.267 Sum_probs=80.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh--HHHHHHHHHHhcCcceeeEeecCChhhHH
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD--KVLQQVMEQLQKLVNVLKVEDLSNEPQVE 179 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde--~~ieQI~kQLeKLvdVikV~dlt~~~~V~ 179 (514)
.-.....+++|++.||.+++++.|+|++-+..+.+++. +++++..++ ...+.+.+....+.. +-.++
T Consensus 312 v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~~~a~~~l~~~~~~~~~---------~v~~~ 380 (447)
T COG0527 312 VSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDAPRALRALLEEKLELLA---------EVEVE 380 (447)
T ss_pred EEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhHHHHHHHHHHHHhhhcc---------eEEee
Confidence 33344445569999999999999999999988877665 888887544 223333333332322 12345
Q ss_pred hheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 180 RELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 180 REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
+.+++|-+--.. ....-+ --.+++-...++-.|.-++...+-|-+-=+.+..+..++.|.
T Consensus 381 ~~~a~vsiVG~gm~~~~gv--------aa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH 441 (447)
T COG0527 381 EGLALVSIVGAGMRSNPGV--------AARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALH 441 (447)
T ss_pred CCeeEEEEEccccccCcCH--------HHHHHHHHHhCCCcEEEEEcCCceEEEEEccHHHHHHHHHHH
Confidence 566666653322 111122 113467777788899999977777777777777777777664
No 279
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=80.10 E-value=10 Score=42.10 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=61.6
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
+.+.+++..-++||-|.+++.+++.+ ||.-+.--.. +.+..++.+.++- +.+.+++|+++|++.= .++.|+++.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~-~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~n 398 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYA-DRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDD 398 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEec-CCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCC
Confidence 47899999999999999999999974 9998877653 4456778888773 5689999999998753 567778876
Q ss_pred hhh
Q 047033 422 PFA 424 (514)
Q Consensus 422 ~~V 424 (514)
+..
T Consensus 399 e~~ 401 (499)
T TIGR01124 399 ELA 401 (499)
T ss_pred HHH
Confidence 543
No 280
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=79.93 E-value=6.2 Score=35.21 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeE--EEEEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSR--ITTVVPATDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSR--iTIVV~gde~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
+-|.+|..|..+-...|..+.+++.++.. .+.+.+ ++|.+.|+-..+-+.+++|+++..++.|.+++=
T Consensus 51 ~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~~~~l 121 (144)
T PF04350_consen 51 EIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIENLSL 121 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEeeeEE
Confidence 45889999999999999999999998644 455665 555667999999999999999999999998873
No 281
>PRK09181 aspartate kinase; Validated
Probab=79.61 E-value=20 Score=39.65 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=73.0
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK 432 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIK 432 (514)
+.||++.||.+.|.+.|.||+.++.+. ..++++++.+.+.++++.+.|++...--++ . .+++++|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss~------~sis~~v~~~~~~~~~~~~~L~~~~~~~~i------~--~~~~a~Vs 406 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATNA------NTITHYLWGSLKTLKRVIAELEKRYPNAEV------T--VRKVAIVS 406 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEecC------cEEEEEEcCChHHHHHHHHHHHHhcCCceE------E--ECCceEEE
Confidence 679999999999999999999765442 468999987644568888888875542222 1 26688888
Q ss_pred EecCcccH----HHHHHHHHhcCcEEEEecCC--EEEEEEecCHHHHHHHHHHh
Q 047033 433 VAVNTTAR----RDVLDIATIFRAKAVDVSDH--TITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 433 V~~~~~~R----~eI~~la~iFrakIVDvs~~--si~iE~TG~~~KIdafi~lL 480 (514)
|--..-.+ ..+++.....+-+|.-++.. .+-|-+.=+.+..+..++.|
T Consensus 407 vVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~l 460 (475)
T PRK09181 407 AIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICAL 460 (475)
T ss_pred EeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHH
Confidence 75443222 35666666677788555554 33333333444444344333
No 282
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=79.59 E-value=6.4 Score=28.42 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=34.7
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHH
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQ 159 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQ 159 (514)
+.+|.+.|+...+++.|+||+.++.+.. ...+++++..+ ..+++.+-
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~~~--~~~~~~~~ 58 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVDES--DLEKAVKA 58 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEeHH--HHHHHHHH
Confidence 5789999999999999999999987764 23466666643 34444443
No 283
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=79.36 E-value=5 Score=32.31 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g 148 (514)
..|.||++.++.+.+++.|+||+-++.. .+ -+++++..
T Consensus 9 ~~~~~~~~a~if~~La~~~InvDmI~~~-~~---~isFtv~~ 46 (67)
T cd04914 9 KDNENDLQQRVFKALANAGISVDLINVS-PE---EVIFTVDG 46 (67)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEEEec-CC---CEEEEEch
Confidence 4588999999999999999999999554 22 36666654
No 284
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.30 E-value=5.4 Score=31.64 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
+.+|++.|+...|++.|+||.-++.|.++. .++++++.++ .+++++.|++
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~--sis~~v~~~~--~~~av~~Lh~ 61 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKV--NISLIVNDSE--AEGCVQALHK 61 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeHHH--HHHHHHHHHH
Confidence 468999999999999999999998877633 4777776533 4445555443
No 285
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.24 E-value=5 Score=34.15 Aligned_cols=59 Identities=14% Similarity=0.329 Sum_probs=45.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC---hHHHHHHHHHHhcCcceeeE
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT---DKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd---e~~ieQI~kQLeKLvdVikV 169 (514)
..++.|.+.|+..+|.+.|.++|-+.-| .. -|+|+++.+ +...+++++.|.+-.+.=.+
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSG---ID-~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i 72 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSG---ID-DISIIIRDNQLTDEKEQKILAEIKEELHPDEI 72 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCC---Cc-cEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999977533 22 289999876 44778888888886555443
No 286
>PRK08526 threonine dehydratase; Provisional
Probab=78.67 E-value=9.1 Score=41.17 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=52.2
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-----cEEEEEEe-cChHHHHHHHHHHhcC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-----ALFTIVVY-GTDKVLQQVMEQLQKL 163 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-----~~~TIVv~-gde~~ieQI~kQLeKL 163 (514)
-+.+.+.+.+.++||-|.+++.++++.|-||..+.-...... ..++++++ -+.+.+++|...|++.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 367899999999999999999999999999999887653322 23667666 3567788888888653
No 287
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=78.64 E-value=8.2 Score=31.46 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=42.4
Q ss_pred EEEEecCc--ccHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEecCHHHHHHHHHHhccCCc-EEE
Q 047033 430 LIKVAVNT--TARRDVLDIATIFRA-------KAVDV---SDHTITLELTGDLDKMVALQRLLEPYGI-CEV 488 (514)
Q Consensus 430 LIKV~~~~--~~R~eI~~la~iFra-------kIVDv---s~~si~iE~TG~~~KIdafi~lL~pyGI-lEv 488 (514)
++|+..+. ...+-|-++++.|+. +|-.+ .-..+++|+.|+.++++++++.|+..|+ .|+
T Consensus 4 l~~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v~vEv 75 (76)
T PF09383_consen 4 LVRLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGVEVEV 75 (76)
T ss_dssp EEEEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCCeEEE
Confidence 56665543 345778888888754 44444 3356999999999999999999999996 453
No 288
>PLN02551 aspartokinase
Probab=78.42 E-value=36 Score=38.21 Aligned_cols=117 Identities=14% Similarity=0.226 Sum_probs=67.9
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH--------HHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK--------VLQQVMEQLQKLVNVLKVEDLSNEPQVER 180 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~--------~ieQI~kQLeKLvdVikV~dlt~~~~V~R 180 (514)
+++|+++||.+.|.+.|+||+-++.+ + .-++++++.++. .++++...|++. ..| .+++
T Consensus 378 ~~~g~~arvf~~l~~~~I~Vd~IssS--e--~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~---~~V-------~v~~ 443 (521)
T PLN02551 378 GQYGFLAKVFSTFEDLGISVDVVATS--E--VSISLTLDPSKLWSRELIQQELDHLVEELEKI---AVV-------NLLQ 443 (521)
T ss_pred CcccHHHHHHHHHHHcCCcEEEEecc--C--CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcC---CeE-------EEeC
Confidence 68999999999999999999999643 2 347777776542 233344444432 111 2456
Q ss_pred heeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 047033 181 ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS--EYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 181 EL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs--~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.+++|-|--.......+. -.++......+-+|.-++ ...+-|-+.=+.+..+..++.|.
T Consensus 444 ~vAiISvVG~~~~~~gva--------ariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH 504 (521)
T PLN02551 444 GRSIISLIGNVQRSSLIL--------EKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 504 (521)
T ss_pred CEEEEEEEccCCCCccHH--------HHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHH
Confidence 788887754322223330 022445556677775555 34344444445555555555554
No 289
>PRK14434 acylphosphatase; Provisional
Probab=78.33 E-value=4.4 Score=35.20 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHhcC---CEEEEecCCEEEEEEeCCh-hHHHHHHHHhcc
Q 047033 210 RWLVDIFR---AKIVDISEYSLTIEVTGDP-GKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~---akVVDvs~~s~~iEvTG~~-~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.|++.|++ +++++|++.|+.
T Consensus 22 ~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~ 64 (92)
T PRK14434 22 YSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRK 64 (92)
T ss_pred HHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhc
Confidence 89999999 9999999999999999998 699999999975
No 290
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.32 E-value=11 Score=28.17 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g 148 (514)
..+.||++.|+...+++.|+|++.++.. ...+++++..
T Consensus 10 ~~~~~~~~~~i~~~L~~~~i~v~~i~~s----~~~is~~v~~ 47 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMISTS----EIKISCLVDE 47 (63)
T ss_pred CCCCccHHHHHHHHHHHCCCCEEEEEcc----CCeEEEEEeH
Confidence 4578999999999999999999999842 2447777764
No 291
>PRK14426 acylphosphatase; Provisional
Probab=78.19 E-value=6 Score=34.20 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhccC
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~py 483 (514)
-|..+.++|..++ +.|-...++++.+++.|++++|++|++.|+.-
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 65 (92)
T PRK14426 19 FRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKEG 65 (92)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhcC
Confidence 4889999999875 77888899999999999999999999999753
No 292
>PRK08639 threonine dehydratase; Validated
Probab=77.94 E-value=15 Score=39.45 Aligned_cols=80 Identities=9% Similarity=0.102 Sum_probs=57.4
Q ss_pred ceEEEEEEEEeCchhHHHHHHH-HHhccCceeeeEEeeecCC--CcEEEEEEec-ChHHHHHHHHHHhcCcceeeEeecC
Q 047033 98 VRRHTISVFVGDESGMINRIAG-VFARRGYNIESLAVGLNKD--KALFTIVVYG-TDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIag-lFsRRgyNIeSLtVg~Ted--~~~~TIVv~g-de~~ieQI~kQLeKLvdVikV~dlt 173 (514)
-+...+++.+-++||-|.+++. ++..++ ||..+.--...+ .+.+.++++. +.+.++++..+|++.= +++++++
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~-NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~ 410 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPND-DITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFG--PSYIDIN 410 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCC-cEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCC--CceEECC
Confidence 3567899999999999999999 555455 999886543222 2346666653 3468899999999864 4666777
Q ss_pred ChhhHHh
Q 047033 174 NEPQVER 180 (514)
Q Consensus 174 ~~~~V~R 180 (514)
+.+.+..
T Consensus 411 ~~~~~~~ 417 (420)
T PRK08639 411 PNEPLYN 417 (420)
T ss_pred CCHHHHH
Confidence 7766654
No 293
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=77.67 E-value=9.8 Score=32.47 Aligned_cols=55 Identities=25% Similarity=0.510 Sum_probs=37.8
Q ss_pred EEEEEEEeCcchHHH----HHHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHH
Q 047033 345 HTLSMLVNDSPGVLN----IVTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQL 406 (514)
Q Consensus 345 htLSIlVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL 406 (514)
+...|.|..+||||. -|.+-..+.||+ |+++.+|-- +++.++++ ++.++++.++|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~-------~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGKY-------IELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEEE-------EEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEEE-------EEEEEeCCCHHHHHHHHHHHHHHh
Confidence 457899999999996 577778899999 999999864 78888876 33455554444
No 294
>PRK14429 acylphosphatase; Provisional
Probab=77.40 E-value=6.9 Score=33.64 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 3888999999875 7899999999999999999999999999974
No 295
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=76.22 E-value=16 Score=36.48 Aligned_cols=69 Identities=10% Similarity=0.186 Sum_probs=51.0
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEe
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~ 170 (514)
.+.+.+..++. -+..+...|.+.++.|.++.....+++..+++.+. ..+...+++..+|.++-+|.+|+
T Consensus 144 ~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~V~~v~ 213 (215)
T PRK09977 144 HYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHATTSIEDLYRLLKGIAGVKGVS 213 (215)
T ss_pred cEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECCCCCHHHHHHHHhcCCCceEEE
Confidence 35555555544 36888899999999999999877665555544433 23567889999999999998885
No 296
>PRK09224 threonine dehydratase; Reviewed
Probab=76.00 E-value=16 Score=40.51 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
+...+++..-++||-|.+++.+++ +.||..++--.. ..+..++.+.++- .++.+++|.+.|++.= .++.|+++
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 468999999999999999999999 689998876653 4456677777763 3445999999997754 46778887
Q ss_pred chhh
Q 047033 421 LPFA 424 (514)
Q Consensus 421 ~~~V 424 (514)
.+..
T Consensus 402 ne~~ 405 (504)
T PRK09224 402 DELA 405 (504)
T ss_pred CHHH
Confidence 6543
No 297
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=75.89 E-value=5.7 Score=33.69 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=38.8
Q ss_pred HHHHHHHHHhc--CcEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 440 RRDVLDIATIF--RAKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 440 R~eI~~la~iF--rakIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
|.-+.++|..+ .+.|-...++++.+++.|+++++++|++.|+.
T Consensus 20 R~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 20 RPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 78899999988 57899999999999999999999999999985
No 298
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=75.76 E-value=20 Score=38.57 Aligned_cols=80 Identities=10% Similarity=0.113 Sum_probs=57.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEec-ChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYG-TDKVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~g-de~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
+...+++.+-++||-|.+++.+....+-||-.+.-..+... +.+.+.++. +.+.++++.+.|++.= ++++++++.
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G--y~~~~~~~~ 401 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD--IHYEDINEN 401 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC--CCeEECCCC
Confidence 56799999999999999999944444449997765543222 346666553 3577899999998864 566777877
Q ss_pred hhHHh
Q 047033 176 PQVER 180 (514)
Q Consensus 176 ~~V~R 180 (514)
+.++.
T Consensus 402 ~~~~~ 406 (409)
T TIGR02079 402 DILYN 406 (409)
T ss_pred HHHHH
Confidence 76654
No 299
>PRK09084 aspartate kinase III; Validated
Probab=75.61 E-value=42 Score=36.64 Aligned_cols=126 Identities=13% Similarity=0.239 Sum_probs=75.1
Q ss_pred EEEEEEEEe-----CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH-------HHHHHHHHHhcCccee
Q 047033 100 RHTISVFVG-----DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK-------VLQQVMEQLQKLVNVL 167 (514)
Q Consensus 100 ~h~IsvlVe-----N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~-------~ieQI~kQLeKLvdVi 167 (514)
+....+.++ +++|+++|+...|++.|+||+-++.+ ..-++++++.++. ..+.+.+.|+++-.
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss----e~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~-- 377 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS----EVSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR-- 377 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc----CcEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe--
Confidence 334445554 68999999999999999999999843 2347777775442 23455556654211
Q ss_pred eEeecCChhhHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 047033 168 KVEDLSNEPQVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 168 kV~dlt~~~~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L 246 (514)
-.+.+.+++|.|--.. .++..+. . .++......+-.++..+....-|-+.=+.+..+..++.|
T Consensus 378 --------i~~~~~va~IsvvG~gm~~~~gv~-------a-rif~aL~~~nI~~I~qgsSe~sIS~vV~~~d~~~al~~L 441 (448)
T PRK09084 378 --------VEVEEGLALVALIGNNLSKACGVA-------K-RVFGVLEPFNIRMICYGASSHNLCFLVPESDAEQVVQAL 441 (448)
T ss_pred --------EEEECCeEEEEEECCCcccCcChH-------H-HHHHHHHhCCeEEEEEcCCCCcEEEEEcHHHHHHHHHHH
Confidence 1246678888886533 2344440 0 112222234666777666655555555555566666655
Q ss_pred c
Q 047033 247 S 247 (514)
Q Consensus 247 ~ 247 (514)
.
T Consensus 442 H 442 (448)
T PRK09084 442 H 442 (448)
T ss_pred H
Confidence 4
No 300
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.50 E-value=9.8 Score=30.13 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.+.||++.|+...+.+- ||.-+..|.++. +++++++. +..++.++.|++
T Consensus 11 ~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~----~is~vv~~--~d~~~av~~LH~ 59 (63)
T cd04920 11 RSLLHKLGPALEVFGKK--PVHLVSQAANDL----NLTFVVDE--DQADGLCARLHF 59 (63)
T ss_pred ccCccHHHHHHHHHhcC--CceEEEEeCCCC----eEEEEEeH--HHHHHHHHHHHH
Confidence 47899999999999875 555566666543 58899984 556666666654
No 301
>PRK14428 acylphosphatase; Provisional
Probab=74.37 E-value=9.4 Score=33.70 Aligned_cols=44 Identities=23% Similarity=0.173 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|+++++++|++.|+.
T Consensus 23 FR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 23 FRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 4889999999875 7888999999999999999999999999973
No 302
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.27 E-value=10 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.328 Sum_probs=36.9
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.+.||+++|+...+++ +||.-++-|.++. +++++++. +..+++++-|+|
T Consensus 12 ~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~----~is~~V~~--~~~~~a~~~Lh~ 60 (64)
T cd04917 12 SETAGVEKRIFDALED--INVRMICYGASNH----NLCFLVKE--EDKDEVVQRLHS 60 (64)
T ss_pred cCCcCHHHHHHHHHHh--CCeEEEEEecCcc----EEEEEEeH--HHHHHHHHHHHH
Confidence 3689999999999964 7888777777643 58888884 446777776665
No 303
>PRK14445 acylphosphatase; Provisional
Probab=74.17 E-value=8.4 Score=33.20 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 19 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 19 FRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred ChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 3888999999875 7889999999999999999999999999973
No 304
>PRK14420 acylphosphatase; Provisional
Probab=74.04 E-value=8.6 Score=32.98 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|++++|++|++.|+.
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 4888999998875 7788889999999999999999999999985
No 305
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=73.95 E-value=45 Score=39.43 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=80.2
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIK 432 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIK 432 (514)
+.||++.||.+.|.+.|.|++-++.+..+. .++++++ ....+.+.+.|+++-. ...=.+++++++|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~----sis~~i~--~~~~~~~~~~l~~~~~-------~~~i~v~~~~a~Vs 395 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ----LLQLAYT--SEVADSALKLLDDAAL-------PGELKLREGLALVA 395 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc----EEEEEEe--HHHHHHHHHHHHhhcC-------CCcEEEeCCeEEEE
Confidence 568999999999999999999988664332 4666666 3356677777777521 12224578899998
Q ss_pred EecCcc-c----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 433 VAVNTT-A----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 433 V~~~~~-~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
|--..- + -..+++.....+-+++..+...+.|-+.=+.+..+..++.|-
T Consensus 396 vVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH 449 (810)
T PRK09466 396 LVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLH 449 (810)
T ss_pred EeCCCcccCccHHHHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHH
Confidence 865432 1 246777667778999999887777766666665555555544
No 306
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=73.84 E-value=11 Score=30.23 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=31.5
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG 148 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g 148 (514)
..+.+|++.++...|++.|+|++.++.+..+ ..+++++..
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~ 50 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDE 50 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeH
Confidence 5578999999999999999999999877332 245566654
No 307
>PRK00341 hypothetical protein; Provisional
Probab=73.69 E-value=23 Score=30.86 Aligned_cols=70 Identities=9% Similarity=0.237 Sum_probs=60.4
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCcee--eeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNI--QSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHE 414 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNI--eSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVik 414 (514)
.+.+.|.-.+.++..+.|..++.|.. .. .++++-++....+-.+|+.+. -+++.++.|-+.|.+.-.|.-
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~m 89 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVHM 89 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEEE
Confidence 48999999999999999999998664 54 567778888889999999987 578899999999999988853
No 308
>PRK14426 acylphosphatase; Provisional
Probab=73.39 E-value=6.4 Score=34.03 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=36.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhccC
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKF 249 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~f 249 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.-
T Consensus 24 ~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~g 65 (92)
T PRK14426 24 QHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLKEG 65 (92)
T ss_pred HHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHhcC
Confidence 88888877 78888899999999999999999999999753
No 309
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=73.26 E-value=22 Score=39.48 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=57.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
+.+.+++..-++||-|.+++.++..+ ||..+.--.... .+.+.+.++ .+.+.+++++.+|++.= .++.|+++.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L~~~G--y~~~dls~ne 399 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYRYADRKDAHIFVGVQLSNPQERQEILARLNDGG--YSVVDLTDDE 399 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCCCH
Confidence 67899999999999999999999984 998887765332 234555554 35678999999998853 6788887754
Q ss_pred h
Q 047033 177 Q 177 (514)
Q Consensus 177 ~ 177 (514)
.
T Consensus 400 ~ 400 (499)
T TIGR01124 400 L 400 (499)
T ss_pred H
Confidence 3
No 310
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=73.13 E-value=17 Score=31.82 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhccCceeeeEEeeecCCCc---E--EEEEEecChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 111 SGMINRIAGVFARRGYNIESLAVGLNKDKA---L--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 111 pGVLsRIaglFsRRgyNIeSLtVg~Ted~~---~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
..+..|+..+..+.|.+|.|..+-+....+ + +++.+.|+-..+.++...||.--+.+-|++++=
T Consensus 16 A~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 16 AALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 357899999999999999999999865443 2 677788999999999999999999999998863
No 311
>PRK09034 aspartate kinase; Reviewed
Probab=72.32 E-value=34 Score=37.38 Aligned_cols=118 Identities=14% Similarity=0.222 Sum_probs=69.5
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH--HH-HHHHHHHhcCcceeeEeecCChhhHHhheeeE
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK--VL-QQVMEQLQKLVNVLKVEDLSNEPQVERELMLI 185 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~--~i-eQI~kQLeKLvdVikV~dlt~~~~V~REL~Li 185 (514)
.+||++.||.+.|++.|+|++-+. ....-++++++.++. .. ..+.+.|++-..+..| .+.+.+++|
T Consensus 320 ~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I-------~~~~~va~V 388 (454)
T PRK09034 320 REVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDEL-------EIEHDLAII 388 (454)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceE-------EEeCCEEEE
Confidence 378999999999999999999883 222347788775432 11 5566666654443223 345678888
Q ss_pred EEecCc-cccccccccccccchhhHHHHHHhcCCEEEEec----CCEEEEEEeCChhHHHHHHHHhc
Q 047033 186 KVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS----EYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 186 KV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs----~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.+--.. .....+ --.++......+..|.-++ +.++.+-+ +.+..+..++.|.
T Consensus 389 sivG~g~~~~~gv--------~arif~aL~~~~InV~mIsq~~Se~~Is~vV--~~~d~~~av~~LH 445 (454)
T PRK09034 389 MVVGEGMRQTVGV--------AAKITKALAEANINIQMINQGSSEISIMFGV--KNEDAEKAVKAIY 445 (454)
T ss_pred EEECCCCCCCccH--------HHHHHHHHHHCCCCEEEEEecCCcceEEEEE--cHHHHHHHHHHHH
Confidence 884321 223333 0133666677777775443 33444444 3344444455544
No 312
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=72.03 E-value=32 Score=29.67 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=57.1
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
..++.+++..-.+||.|-+....+..+. ||.-++=--+.+ +..++-+-+.- +.+.++++.++|+++= ..+.|+|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~-~~a~vlvgi~v~~~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGD-DFARVLVGIEVPDAEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTT-SCSEEEEEEE-SSTHHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCC-CeeeEEEEEEeCCHHHHHHHHHHHHHcC--CCeEECCC
Confidence 3578999999999999999999998776 688888765554 66777777763 3455899999999984 67888998
Q ss_pred chhh
Q 047033 421 LPFA 424 (514)
Q Consensus 421 ~~~V 424 (514)
.+..
T Consensus 84 ne~~ 87 (91)
T PF00585_consen 84 NELA 87 (91)
T ss_dssp -HHH
T ss_pred CHHH
Confidence 7654
No 313
>PRK14422 acylphosphatase; Provisional
Probab=71.97 E-value=10 Score=32.91 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++-|+.++|++|++.|+.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 21 FRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 4888999999875 7889999999999999999999999999974
No 314
>PRK14449 acylphosphatase; Provisional
Probab=71.78 E-value=10 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=39.4
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 18 FR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 18 LRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred hHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 3788999999875 7788889999999999999999999999985
No 315
>PRK14436 acylphosphatase; Provisional
Probab=71.59 E-value=11 Score=32.56 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 19 FR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 19 FRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 3788999998775 8899999999999999999999999999973
No 316
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=71.40 E-value=9.4 Score=34.30 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=41.0
Q ss_pred chHHHHHHHHhhccC--ceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccE
Q 047033 355 PGVLNIVTGVFARRG--YNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDL 412 (514)
Q Consensus 355 pGVL~RItgLFsRRG--yNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidV 412 (514)
.|+|+|+..+.-..| |.|..+.||.+.+ +.|.-.+.|. .|++.+++|+.+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~-d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKD-DTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTT-S-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCC-CceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 489999999877766 8999999998643 4455555554 3778899999999887554
No 317
>PRK14442 acylphosphatase; Provisional
Probab=71.19 E-value=10 Score=32.79 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|++++++.|++.|+.
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 19 FRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 3888999999875 7899999999999999999999999999984
No 318
>PRK14429 acylphosphatase; Provisional
Probab=70.98 E-value=10 Score=32.65 Aligned_cols=39 Identities=8% Similarity=-0.045 Sum_probs=35.9
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-..++.++.+++.|++++|++|++.|+.
T Consensus 22 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (90)
T PRK14429 22 LTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCEV 62 (90)
T ss_pred HHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 78888877 7899999999999999999999999999984
No 319
>PRK14444 acylphosphatase; Provisional
Probab=70.62 E-value=12 Score=32.35 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+
T Consensus 19 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 63 (92)
T PRK14444 19 FRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCY 63 (92)
T ss_pred cHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHH
Confidence 3888999998875 889999999999999999999999999997
No 320
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=70.59 E-value=16 Score=30.61 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcc
Q 047033 110 ESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVN 165 (514)
Q Consensus 110 ~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvd 165 (514)
.+|.-.+|..+++|.+.+|-+- +-+..-+|+.+.++.+.++++.+.|+|..+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K----~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK----DTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE----ecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 4889999999999999999766 335567999999999999999999988764
No 321
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=70.43 E-value=56 Score=38.63 Aligned_cols=118 Identities=10% Similarity=0.151 Sum_probs=67.8
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHHhcCcceeeEeecCChhhHHhhe
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQLQKLVNVLKVEDLSNEPQVEREL 182 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL 182 (514)
.+++|+++||.+.|++.|+||+-++.+ ..-++++++..+ +.++.+.++|.++-.|. +++.+
T Consensus 333 ~~~~g~~a~if~~la~~~I~Vd~I~ss----e~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~----------~~~~v 398 (861)
T PRK08961 333 WQQVGFLADVFTLFKKHGLSVDLISSS----ETNVTVSLDPSENLVNTDVLAALSADLSQICRVK----------IIVPC 398 (861)
T ss_pred cccccHHHHHHHHHHHcCCeEEEEEcC----CCEEEEEEccccccchHHHHHHHHHHHhhcCcEE----------EeCCe
Confidence 378999999999999999999988532 234777776533 45677777776533321 23456
Q ss_pred eeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 183 MLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 183 ~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
++|-|--.. ..+..+. -.++......+..++-.+....-|-+.=+.+..+..++.|.
T Consensus 399 a~ISvVG~gm~~~~gv~--------arif~aL~~~~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH 456 (861)
T PRK08961 399 AAVSLVGRGMRSLLHKL--------GPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456 (861)
T ss_pred EEEEEeCCCcccCcChH--------HHHHHHHhhcCeEEEECCCccccEEEEEeHHHHHHHHHHHH
Confidence 776664322 2333430 01123233345666666655444444444444444444443
No 322
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=70.20 E-value=21 Score=30.48 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=37.8
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeEEeeecCCCcEEEEEEecC-----hHHHHHHHHHH
Q 047033 101 HTISVFVGDESGMIN----RIAGVFARRGYN-IESLAVGLNKDKALFTIVVYGT-----DKVLQQVMEQL 160 (514)
Q Consensus 101 h~IsvlVeN~pGVLs----RIaglFsRRgyN-IeSLtVg~Ted~~~~TIVv~gd-----e~~ieQI~kQL 160 (514)
+...|+|..+||||. -|.+-+.+.||+ |+++.+|- ++++.++++ ++.++++.++|
T Consensus 1 ~~~~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK-----~~~l~~~~~~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 1 MKVRVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGK-----YIELELEADDEEEAEEQVEEICEKL 65 (80)
T ss_dssp EEEEEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEE-----EEEEEEE-SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEE-----EEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 357899999999996 577888899999 99988763 578888876 34555555555
No 323
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=69.94 E-value=23 Score=28.40 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033 110 ESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 110 ~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe 161 (514)
+||++.|+...+++.|+|+.-++.+.++ -.++++++. +..+++++.|.
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~--~~is~~V~~--~~~~~av~~Lh 61 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRN--VDVQFVVDR--DDYDNAIKALH 61 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCe--eEEEEEEEH--HHHHHHHHHHH
Confidence 7899999999999999999988877652 246667654 33445555444
No 324
>PRK14433 acylphosphatase; Provisional
Probab=69.90 E-value=12 Score=32.14 Aligned_cols=44 Identities=20% Similarity=0.154 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|+++.|++|++.|+.
T Consensus 16 FR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 16 YRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 3788899998775 7899999999999999999999999999984
No 325
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=69.70 E-value=27 Score=29.45 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=61.1
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccC--ceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRG--YNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRG--yNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
..|++.+...|.++..+.|..+|.+.. ++-..+...++-...+-.+|+.+. -+.+.++.+-+.|.+.-.|.-|
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 469999999999999999999999974 455666777888889999999887 6888999999999998888754
No 326
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=69.65 E-value=13 Score=29.16 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=34.7
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
..+.||++.|+...+.+.|+|+...+. .+..+.++++.+ ..+++++.|++
T Consensus 11 ~~~~~gi~~~if~aL~~~~I~v~~~~~----Se~~is~~v~~~--~~~~av~~Lh~ 60 (64)
T cd04937 11 IRGVPGVMAKIVGALSKEGIEILQTAD----SHTTISCLVSED--DVKEAVNALHE 60 (64)
T ss_pred ccCCcCHHHHHHHHHHHCCCCEEEEEc----CccEEEEEEcHH--HHHHHHHHHHH
Confidence 347899999999999999999974442 233477777653 34455555544
No 327
>PRK09224 threonine dehydratase; Reviewed
Probab=69.49 E-value=27 Score=38.77 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=57.0
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
-++..+++.+-++||-|.+++.++. +-||..+.--... +.+.+.+.++ +.+..++++++.|++.= ++++++++
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g--y~~~~ls~ 401 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQEERAEIIAQLRAHG--YPVVDLSD 401 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChhhHHHHHHHHHHHcC--CCeEECCC
Confidence 3578999999999999999999999 6899887765532 2234444444 44445899999998754 67788877
Q ss_pred hhhH
Q 047033 175 EPQV 178 (514)
Q Consensus 175 ~~~V 178 (514)
.+..
T Consensus 402 ne~~ 405 (504)
T PRK09224 402 DELA 405 (504)
T ss_pred CHHH
Confidence 6543
No 328
>PRK14427 acylphosphatase; Provisional
Probab=69.22 E-value=14 Score=32.23 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|+.++|++|++.|+.
T Consensus 21 FR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 21 FRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred ChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 4888999999875 7899999999999999999999999999974
No 329
>PRK14439 acylphosphatase; Provisional
Probab=69.15 E-value=12 Score=36.29 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=41.2
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhccCC
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEPYG 484 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~pyG 484 (514)
-|.-+.++|+.++ |.|-...++++.+++.|++++|+.|++.|+..|
T Consensus 90 FR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 90 FRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 4788889999886 778899999999999999999999999998755
No 330
>PRK09181 aspartate kinase; Validated
Probab=68.93 E-value=69 Score=35.54 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=70.4
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEe
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVN 188 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~ 188 (514)
+++|++.||.+.|.+.|+||+.+..+ + .-+++++..+...++++.+.|++...--.+. .+++++|-|-
T Consensus 341 ~~~g~~~~if~~l~~~~i~v~~i~ss--~--~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~--------~~~~a~VsvV 408 (475)
T PRK09181 341 GEDGYDLEILEILTRHKVSYISKATN--A--NTITHYLWGSLKTLKRVIAELEKRYPNAEVT--------VRKVAIVSAI 408 (475)
T ss_pred CcchHHHHHHHHHHHcCCeEEEEEec--C--cEEEEEEcCChHHHHHHHHHHHHhcCCceEE--------ECCceEEEEe
Confidence 67999999999999999999976543 2 3477777766345677777787655422221 2567777775
Q ss_pred cCccccccccccccccchhhHHHHHHhcCCEEEEecCC--EEEEEEeCChhHHHHHHHHhc
Q 047033 189 ADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY--SLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 189 ~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~--s~~iEvTG~~~kIdafi~~L~ 247 (514)
-....+..+. -.++......+-+|.-++.. ..-|-+.=+.+..+..++.|.
T Consensus 409 G~gm~~~gv~--------ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 409 GSNIAVPGVL--------AKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred CCCCCcccHH--------HHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHH
Confidence 4332344440 01244445666777555554 333333334444444444443
No 331
>PRK14421 acylphosphatase; Provisional
Probab=68.92 E-value=14 Score=32.68 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 3788899998774 7899999999999999999999999999973
No 332
>PRK14423 acylphosphatase; Provisional
Probab=68.72 E-value=14 Score=31.97 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|++++|+.|++.|+.
T Consensus 20 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 20 YRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred ehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 3888999999875 8899999999999999999999999999973
No 333
>PRK06291 aspartate kinase; Provisional
Probab=68.68 E-value=33 Score=37.52 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEe
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVN 188 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~ 188 (514)
+.||++.|+...|++.|+|++-++.+.++ .-+++++..+ ..++.++.|++...=. .-..=.+.+++++|.|-
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~~--d~~~av~~L~~~~~~~----~~~~i~~~~~~a~Isvv 404 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDEA--DLEKALKALRREFGEG----LVRDVTFDKDVCVVAVV 404 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeHH--HHHHHHHHHHHHHHHh----cCcceEEeCCEEEEEEE
Confidence 78999999999999999999998876433 3366666643 2444444444422100 01112345678888886
Q ss_pred cCc-cccccccccccccchhhHHHHHHhcCCEEEEec--CCEEEEEEeCChhHHHHHHHHhc
Q 047033 189 ADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS--EYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 189 ~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs--~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
-.. ..+..+ --.++......+-+|.-++ ....-|-+.=+.+..+..++.|.
T Consensus 405 G~gm~~~~gv--------~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh 458 (465)
T PRK06291 405 GAGMAGTPGV--------AGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLH 458 (465)
T ss_pred cCCccCCcCh--------HHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHH
Confidence 533 233333 0023455555677775555 33344444445555666666654
No 334
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=68.67 E-value=38 Score=36.53 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc---CcceeeEeecCChhhHHhheeeEEE
Q 047033 111 SGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK---LVNVLKVEDLSNEPQVERELMLIKV 187 (514)
Q Consensus 111 pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK---LvdVikV~dlt~~~~V~REL~LiKV 187 (514)
+|++.|+...|++.|+||+.++.+..+ .-++++++.++ .+...+.|.+ ...+..+ .+.+.++++.|
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se--~sIs~~I~~~~--~~~a~~~L~~~~~~~~~~~I-------~~~~~~a~Vsv 383 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSE--TSISFTVDKED--ADQAKTLLKSELNLSALSSV-------EVEKGLAKVSL 383 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCC--ceEEEEEEHHH--HHHHHHHHHHHHHhcCcceE-------EEcCCeEEEEE
Confidence 899999999999999999999744433 23666666433 4444444433 2222222 23556888888
Q ss_pred ecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 188 NADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 188 ~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.... .+...+ --.+++.....+-.|.-++....-+-++=+.+..+..++.|.
T Consensus 384 vG~~~~~~~g~--------~a~if~~La~~~Inv~~i~~se~~Is~vV~~~d~~~a~~~Lh 436 (441)
T TIGR00657 384 VGAGMKSAPGV--------ASKIFEALAQNGINIEMISSSEINISFVVDEKDAEKAVRLLH 436 (441)
T ss_pred EcCCCCCCCch--------HHHHHHHHHHCCCCEEEEEecCCcEEEEEeHHHHHHHHHHHH
Confidence 5322 222322 013366777777777777543344444444555666666654
No 335
>PRK14447 acylphosphatase; Provisional
Probab=68.65 E-value=14 Score=32.20 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhcC--cEEEEecCC-EEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDH-TITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~-si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.++ +.|-...+. ++.+++.|++++|++|++.|+
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 3888999999876 677788888 799999999999999999997
No 336
>PRK14451 acylphosphatase; Provisional
Probab=68.26 E-value=14 Score=31.92 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|++++|++|++.|+.
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 18 FRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 3788889998775 7788899999999999999999999999984
No 337
>PRK14435 acylphosphatase; Provisional
Probab=67.98 E-value=12 Score=32.27 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +-|-...++++.+++.|+++++++|++.|+.
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 17 FRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred ChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 4888999998775 7788888899999999999999999999984
No 338
>PRK14441 acylphosphatase; Provisional
Probab=67.78 E-value=14 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|+++.++.|++.|+.
T Consensus 20 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 20 FRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred chHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 3889999999875 7889999999999999999999999999973
No 339
>PRK14428 acylphosphatase; Provisional
Probab=67.29 E-value=11 Score=33.22 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=35.5
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++.+++|++.|+.
T Consensus 28 ~~~A~~lgL~G~V~N~~dGsVei~~qG~~~~i~~fi~~l~~ 68 (97)
T PRK14428 28 VTQARRLGVQGWVRNCRDGSVELEAQGSSDAVQALVEQLAI 68 (97)
T ss_pred HHHHHHcCCEEEEEECCCCEEEEEEEcCHHHHHHHHHHHhh
Confidence 78888876 7899999999999999999999999999973
No 340
>PRK14449 acylphosphatase; Provisional
Probab=67.07 E-value=14 Score=31.84 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=35.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.|++.|+++++++|++.|+.
T Consensus 23 ~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14449 23 YQKAVSLGITGYAENLYDGSVEVVAEGDEENIKELINFIKT 63 (90)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 78888876 7788888889999999999999999999985
No 341
>PRK14438 acylphosphatase; Provisional
Probab=66.97 E-value=16 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++-|++++|++|++.|+.
T Consensus 18 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 18 FRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred ccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 3788899999875 7899999999999999999999999999973
No 342
>PRK14420 acylphosphatase; Provisional
Probab=66.74 E-value=11 Score=32.39 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.|++.|++++|++|++.|+.
T Consensus 22 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 62 (91)
T PRK14420 22 QMEADKRKLTGWVKNRDDGTVEIEAEGPEEALQLFLDAIEK 62 (91)
T ss_pred HHHHHHcCCEEEEEECCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 78888876 7788889889999999999999999999985
No 343
>PRK14446 acylphosphatase; Provisional
Probab=66.25 E-value=12 Score=32.43 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|+.++ +.|-...+.++.+++.|+++.++.|++.|+.
T Consensus 17 FR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 17 YRASTRERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred EhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 3888999999875 7788999999999999999999999999983
No 344
>PRK14430 acylphosphatase; Provisional
Probab=66.23 E-value=16 Score=31.71 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 3888999999875 7788889999999999999999999999975
No 345
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=66.02 E-value=10 Score=32.20 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHhc--CCEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIF--RAKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F--~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.+ .|.|-...++++.+++.|+++++++|++.|+.
T Consensus 24 ~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 24 KRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp HHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 7888888 58899999999999999999999999999985
No 346
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=65.51 E-value=20 Score=31.23 Aligned_cols=52 Identities=27% Similarity=0.471 Sum_probs=40.7
Q ss_pred EEEEEEEeCcchHHH----HHHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHH
Q 047033 345 HTLSMLVNDSPGVLN----IVTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPA-TDESISKLM 403 (514)
Q Consensus 345 htLSIlVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~ 403 (514)
+...|.|..+||||+ -|.+-+.+.||+ +..+.+|- .|.+.+++ +++..++.+
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK-------~~el~ld~~~~e~a~~~v 59 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGK-------VIELELDAESEEKAEEEV 59 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeeee-------EEEEEecCcchhHHHHHH
Confidence 577899999999996 688999999999 99988885 48888886 343443333
No 347
>PRK14422 acylphosphatase; Provisional
Probab=65.41 E-value=14 Score=32.15 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=35.9
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+.++|++|++.|+.
T Consensus 26 ~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 26 RSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 88888877 7899999999999999999999999999974
No 348
>PRK14445 acylphosphatase; Provisional
Probab=65.40 E-value=12 Score=32.35 Aligned_cols=39 Identities=10% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++++++|++.|+.
T Consensus 24 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (91)
T PRK14445 24 DRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAER 64 (91)
T ss_pred HHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 78888876 7899999999999999999999999999974
No 349
>PRK05925 aspartate kinase; Provisional
Probab=64.93 E-value=1.6e+02 Score=32.51 Aligned_cols=111 Identities=19% Similarity=0.137 Sum_probs=69.9
Q ss_pred cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh---HHHHHHHHHHhcCccEEEEEecCCchhhheeeEE
Q 047033 354 SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD---ESISKLMQQLYKLIDLHEVRDLTHLPFAERELML 430 (514)
Q Consensus 354 ~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde---~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~L 430 (514)
.+|.++||.+.|.+.|.||+.++... +.++++++.++ ..++.+.+.|.++- ++ .++..+++
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~~------~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i-------~~~~~~a~ 374 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQN------LGVYFTIDDDDISEEYPQHLTDALSAFG---TV-------SCEGPLAL 374 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEeccC------CEEEEEEechhccHHHHHHHHHHhcCCc---eE-------EEECCEEE
Confidence 57889999999999999999886442 36888888442 23444444444321 11 13456888
Q ss_pred EEEecCccc----HHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHh
Q 047033 431 IKVAVNTTA----RRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 431 IKV~~~~~~----R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL 480 (514)
|-|--..-. -..++......+-+|.-++....-+-+.=+.+..++.++.|
T Consensus 375 VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~L 428 (440)
T PRK05925 375 ITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELL 428 (440)
T ss_pred EEEeCCCcccccHHHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHH
Confidence 887543221 23555555566678888877666666655555555555544
No 350
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=64.87 E-value=40 Score=29.51 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEE--EEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 356 GVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRIT--TVVPATDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 356 GVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiT--IVV~gde~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
.+.+|+..+....|-+|.|..+-+.. +.++.+|. +.+.|+-..+.++...|+.--..+-|++++=
T Consensus 17 ~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~P~l~Vd~L~i 84 (110)
T PF10741_consen 17 ALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGRPFLFVDDLSI 84 (110)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCCCeEEEeEEEE
Confidence 57899999999999999999998744 34555554 4556999999999999999999999988763
No 351
>PRK14432 acylphosphatase; Provisional
Probab=64.86 E-value=18 Score=31.49 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEe-cCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELT-GDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~T-G~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++. |++++++.|++.|+.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 17 FRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred ehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 3788889998765 8899999999999997 999999999999975
No 352
>PRK14425 acylphosphatase; Provisional
Probab=64.43 E-value=17 Score=31.60 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++-|+.++|++|++.|+.
T Consensus 21 FR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 21 FRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred chHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 4888999998775 7788999999999999999999999999985
No 353
>PRK14440 acylphosphatase; Provisional
Probab=63.91 E-value=19 Score=31.05 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +-|-...++++.+++.|+.++++.|++.|+.
T Consensus 18 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 18 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 3788999998875 6788889999999999999999999999985
No 354
>PRK14439 acylphosphatase; Provisional
Probab=63.89 E-value=15 Score=35.68 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=37.6
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG 250 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG 250 (514)
.++|+.++ |.|-...+.++.|++.|++++|++|++.|+..|
T Consensus 95 ~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 95 QYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 88999987 788899999999999999999999999998755
No 355
>PRK14442 acylphosphatase; Provisional
Probab=63.55 E-value=13 Score=32.04 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 24 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14442 24 REEADRLELDGWVRNLDDGRVEVVWEGEEDRAKALERWLGR 64 (91)
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 78888887 7899999999999999999999999999984
No 356
>PRK14433 acylphosphatase; Provisional
Probab=63.50 E-value=16 Score=31.45 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=35.4
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 21 ~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 61 (87)
T PRK14433 21 QKKARELGLSGYAENLSDGRVEVVAEGPKEALERLLHWLRR 61 (87)
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 78888876 8899999999999999999999999999984
No 357
>PRK14436 acylphosphatase; Provisional
Probab=63.00 E-value=14 Score=31.97 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 24 ~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (91)
T PRK14436 24 QREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQ 64 (91)
T ss_pred HHHHHHcCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHhh
Confidence 77888776 8899999999999999999999999999974
No 358
>PRK14448 acylphosphatase; Provisional
Probab=62.88 E-value=20 Score=30.91 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|++++++.|++.|+.
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 17 FRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred hHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 3788889998775 7788899999999999999999999999984
No 359
>PRK14443 acylphosphatase; Provisional
Probab=61.88 E-value=21 Score=31.31 Aligned_cols=45 Identities=7% Similarity=0.150 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhccC
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~py 483 (514)
-|.-+.++|..++ +.|-...++++.+++.|+.++++.|++.|+.-
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~g 65 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKKG 65 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhcC
Confidence 3788889998774 78999999999999999999999999999763
No 360
>PRK14645 hypothetical protein; Provisional
Probab=61.86 E-value=31 Score=32.87 Aligned_cols=121 Identities=16% Similarity=0.212 Sum_probs=75.0
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC------hHHHHHHHHHHhcCcceeeEeecCChhhHHh
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT------DKVLQQVMEQLQKLVNVLKVEDLSNEPQVER 180 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd------e~~ieQI~kQLeKLvdVikV~dlt~~~~V~R 180 (514)
.+|+.-+-..+..+....||-+..+.+.......+++|.++.+ -+..+++-++|.+++|+.... . .
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i--~-~----- 76 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPI--E-G----- 76 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccC--C-C-----
Confidence 4677788899999999999999999988766666788888742 256788899999999864321 1 1
Q ss_pred heeeEEEecCcccccccccccc-----ccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhH
Q 047033 181 ELMLIKVNADPKFRAEIFLFPC-----LGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGK 238 (514)
Q Consensus 181 EL~LiKV~~~~~~r~EI~~~~~-----~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~k 238 (514)
. =.+-|+.+.-.|+=- .|. ....-.|..=-+.|.|++.++.++.+++++-|..-+
T Consensus 77 ~-Y~LEVSSPGldRpL~--~~~df~r~~G~~v~v~~~~k~~~G~L~~~~d~~i~l~~~~~~~~ 136 (154)
T PRK14645 77 E-YRLEVESPGPKRPLF--TARHFERFAGLKAKVRGPGENFTGRIKAVSGDQVTFDVGGEDRT 136 (154)
T ss_pred c-eEEEEeCCCCCCCCC--CHHHHHHhCCCEEEEEcCCeEEEEEEEEEeCCEEEEEECCeEEE
Confidence 0 123333333222100 000 000001110135677888888888888887665433
No 361
>PRK14450 acylphosphatase; Provisional
Probab=61.21 E-value=22 Score=30.60 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCE-EEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHT-ITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~s-i~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+++ +.+++.|++++++.|++.|+.
T Consensus 17 FR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 17 FRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred cHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 3788899998774 7788888885 999999999999999999984
No 362
>PRK14427 acylphosphatase; Provisional
Probab=61.09 E-value=16 Score=31.78 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=35.8
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.|++.|+.++|++|++.|+.
T Consensus 26 ~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~i~~f~~~l~~ 66 (94)
T PRK14427 26 MRKAEELGLTGTVRNLDDGSVALVAEGTGEQVEKLLDWLNS 66 (94)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHhh
Confidence 78888876 7899999999999999999999999999984
No 363
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=60.71 E-value=23 Score=39.30 Aligned_cols=68 Identities=12% Similarity=0.293 Sum_probs=54.2
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec-ChHHHHHHHHHHhcCcceeeEeecC
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG-TDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g-de~~ieQI~kQLeKLvdVikV~dlt 173 (514)
|.|..+|+.|+..-|..+|..+++|+.++-+.+. ++|-+-... +.....++++++.++-.|..|..+.
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 71 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhc
Confidence 6788999999999999999999999999998443 555554443 3456788999999998888885443
No 364
>PRK14423 acylphosphatase; Provisional
Probab=60.66 E-value=20 Score=30.96 Aligned_cols=39 Identities=8% Similarity=0.008 Sum_probs=35.6
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 25 ~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 65 (92)
T PRK14423 25 RDTARELGVDGWVRNLDDGRVEAVFEGPRDAVEAMVEWCHE 65 (92)
T ss_pred HHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHh
Confidence 78888876 8899999999999999999999999999973
No 365
>PRK14421 acylphosphatase; Provisional
Probab=60.62 E-value=18 Score=32.07 Aligned_cols=39 Identities=5% Similarity=0.044 Sum_probs=35.1
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|+++++++|++.|+.
T Consensus 24 ~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 64 (99)
T PRK14421 24 ARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCRR 64 (99)
T ss_pred HHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 77888776 7899999999999999999999999999974
No 366
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=60.55 E-value=36 Score=40.08 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=74.1
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCcc--EE--EEEecCCchhhhee
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLID--LH--EVRDLTHLPFAERE 427 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLid--Vi--kV~dlt~~~~V~RE 427 (514)
.++||++.|+...|.+.|+||+-++.+.++ ..++++++.+ ..+..++-|++-.. .. ++. .-.+...
T Consensus 326 ~~~~G~~arIf~~La~~gI~V~mIsqssSe----~sIsf~V~~~--d~~~av~~L~~~f~~el~~~~~~----~i~~~~~ 395 (819)
T PRK09436 326 KGMVGMASRVFAALSRAGISVVLITQSSSE----YSISFCVPQS--DAAKAKRALEEEFALELKEGLLE----PLEVEEN 395 (819)
T ss_pred CCCcCHHHHHHHHHHHCCCcEEEEEcCCCC----ceEEEEEeHH--HHHHHHHHHHHHHHHHhccCCcc----eEEEeCC
Confidence 478999999999999999999998877554 2588888843 34444444444211 10 010 0123456
Q ss_pred eEEEEEecCcc-----cHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHhcc
Q 047033 428 LMLIKVAVNTT-----ARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 428 L~LIKV~~~~~-----~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL~p 482 (514)
+++|.|.-..- --..++......+.+|.-++ .....|-+.=+.+..+..++.|..
T Consensus 396 valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~ 457 (819)
T PRK09436 396 LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQ 457 (819)
T ss_pred EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHH
Confidence 88888865432 12456666666677775554 444455555555666666666654
No 367
>PRK14435 acylphosphatase; Provisional
Probab=60.40 E-value=15 Score=31.64 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=34.7
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 22 ~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 62 (90)
T PRK14435 22 RRVAKSLGVKGYVMNMDDGSVFIHAEGDENALRRFLNEVAK 62 (90)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 77887776 7788888899999999999999999999984
No 368
>PRK14447 acylphosphatase; Provisional
Probab=60.10 E-value=21 Score=31.13 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=34.0
Q ss_pred HHHHHhcC--CEEEEecCC-EEEEEEeCChhHHHHHHHHhc
Q 047033 210 RWLVDIFR--AKIVDISEY-SLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~-s~~iEvTG~~~kIdafi~~L~ 247 (514)
.++|+.++ |.|-...+. ++.+++.|++++|++|++.|+
T Consensus 24 ~~~A~~~gl~G~V~N~~dG~~Vei~~qG~~~~l~~f~~~l~ 64 (95)
T PRK14447 24 KEVANRNGVRGWVRNRSDGRTVEAVLEGPRDAVLKVIEWAR 64 (95)
T ss_pred HHHHhhcCeEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh
Confidence 78888877 678888888 699999999999999999997
No 369
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=60.04 E-value=1.3e+02 Score=35.70 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEe
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVN 188 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~ 188 (514)
+.||++.|+.+.|++.|+|++-++.+..+. -+.+++.. ...+.+.+.|+++-.. ..=.+++++++|-|-
T Consensus 329 g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~--~~~~~~~~~l~~~~~~-------~~i~v~~~~a~VsvV 397 (810)
T PRK09466 329 DFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTS--EVADSALKLLDDAALP-------GELKLREGLALVALV 397 (810)
T ss_pred CcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeH--HHHHHHHHHHHhhcCC-------CcEEEeCCeEEEEEe
Confidence 568999999999999999999987663322 34444442 2456666777765211 222356788888875
Q ss_pred cCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 189 ADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 189 ~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
-.. .++..+. -.++......+-+++.++....-|-+.=+.+..+..++.|..
T Consensus 398 G~gm~~~~gv~--------~~~f~aL~~~~I~ii~~~~s~~sis~vV~~~d~~~av~~LH~ 450 (810)
T PRK09466 398 GAGVTRNPLHC--------HRFYQQLKDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 (810)
T ss_pred CCCcccCccHH--------HHHHHHHHhCCCcEEEEeCCCcEEEEEEehHHHHHHHHHHHH
Confidence 433 2333330 022444455688888888877777666666666666666553
No 370
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.94 E-value=89 Score=26.40 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=57.5
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhh
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFA 424 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V 424 (514)
+.+.+..--+||.|-+....+. .+.||.-.+=--... +..++-+-+.-.+..++++.++|+++= ..+.|+++.+..
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~-~~a~vlvGi~~~~~~~~~l~~~l~~~g--~~~~dls~ne~~ 77 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGS-DYGRVLVGIQVPDADLDELKERLDALG--YPYQEETDNPAY 77 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCC-CceeEEEEEEeChHHHHHHHHHHHHcC--CCeEECCCCHHH
Confidence 6788888899999999999994 378888877765443 566677766643448999999999864 567788876644
No 371
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=59.86 E-value=27 Score=31.46 Aligned_cols=56 Identities=27% Similarity=0.535 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhccC--ceeeeEEeeecC-CCcEEEEEEec-ChHHHHHHHHHHhcCcce
Q 047033 111 SGMINRIAGVFARRG--YNIESLAVGLNK-DKALFTIVVYG-TDKVLQQVMEQLQKLVNV 166 (514)
Q Consensus 111 pGVLsRIaglFsRRg--yNIeSLtVg~Te-d~~~~TIVv~g-de~~ieQI~kQLeKLvdV 166 (514)
.|+|+|+-.+.-..| |.|..+.||.+. +++...|.|.+ |++.+++|..+|..|-.+
T Consensus 15 Sgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 15 SGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp SSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 589999999776666 889999999865 45677777764 678899999999888665
No 372
>PRK14438 acylphosphatase; Provisional
Probab=59.77 E-value=19 Score=31.07 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=35.5
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 23 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (91)
T PRK14438 23 QQTAQRLNVSGWVKNLPNGSVQGCFEGEETDVAALIDWCHH 63 (91)
T ss_pred HHHHHHcCCEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 78888876 8899999999999999999999999999973
No 373
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=59.72 E-value=66 Score=27.69 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=53.5
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCC-CcE--EEEEEecChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKD-KAL--FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted-~~~--~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
.+++.+.+..-.+||.|-+....+..+. ||.-++=--+.+ .+. +-|-+.. .+.++++.++|+++= ..+.|+|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~~-~~~~~~l~~~L~~~g--y~~~dls~ 83 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVPD-AEDLEELIERLKALG--YPYEDLSD 83 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-SS-THHHHHHHHHHTSSS---EEECTTT
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeCC-HHHHHHHHHHHHHcC--CCeEECCC
Confidence 4788999999999999999999997766 688777765443 455 4455544 344899999999984 77888888
Q ss_pred hhhHH
Q 047033 175 EPQVE 179 (514)
Q Consensus 175 ~~~V~ 179 (514)
.+...
T Consensus 84 ne~~k 88 (91)
T PF00585_consen 84 NELAK 88 (91)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 77654
No 374
>PRK05783 hypothetical protein; Provisional
Probab=59.49 E-value=37 Score=29.53 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=43.2
Q ss_pred eeEEEEEEEeCcchHHH----HHHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHH-HhcC
Q 047033 343 RSHTLSMLVNDSPGVLN----IVTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQ-LYKL 409 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQ-L~KL 409 (514)
|.+...|+|..+||||+ -|.+-..++||+ ++++.+|-. |.+.++++ ++..++.+++ .+||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK~-------iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGKY-------LVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeEE-------EEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45889999999999996 577888778884 888888853 77778764 3333433333 3565
No 375
>PRK14444 acylphosphatase; Provisional
Probab=59.41 E-value=18 Score=31.27 Aligned_cols=39 Identities=8% Similarity=-0.079 Sum_probs=35.5
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 24 ~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14444 24 RDRAREAGVKGWVRNLSDGRVEAVFEGSRPAVQKMISWCYS 64 (92)
T ss_pred HHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 78888876 8899999999999999999999999999973
No 376
>PRK14425 acylphosphatase; Provisional
Probab=58.98 E-value=24 Score=30.77 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=35.4
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|+.++|++|++.|+.
T Consensus 26 ~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~~ 66 (94)
T PRK14425 26 RDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFRR 66 (94)
T ss_pred HHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHhh
Confidence 78888876 7788999999999999999999999999985
No 377
>PRK14637 hypothetical protein; Provisional
Probab=58.80 E-value=46 Score=31.55 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC----hHHHHHHHHHHhcCcceee-EeecCChhhHHhheee
Q 047033 110 ESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT----DKVLQQVMEQLQKLVNVLK-VEDLSNEPQVERELML 184 (514)
Q Consensus 110 ~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd----e~~ieQI~kQLeKLvdVik-V~dlt~~~~V~REL~L 184 (514)
.-|--..+..+....||.+..+..........++|.++.+ -+..+++-++|...+|+.- +.+| .
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y-----------~ 75 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDV-----------F 75 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCc-----------E
Confidence 3467778889999999999999988776777888888743 4678888999888877521 1221 3
Q ss_pred EEEecCccccccccccccc-----cchhhHH-HHHHhc-CCEEEEecCCEEEEEEeCC
Q 047033 185 IKVNADPKFRAEIFLFPCL-----GVHLQIR-WLVDIF-RAKIVDISEYSLTIEVTGD 235 (514)
Q Consensus 185 iKV~~~~~~r~EI~~~~~~-----~~~~~i~-~l~~~F-~akVVDvs~~s~~iEvTG~ 235 (514)
+-|+.+.-.|+=- .|.. ...-.|. .--+.| .|++.++.++.++++..|.
T Consensus 76 LEVSSPGldRpL~--~~~~f~r~~G~~V~V~l~~~~~~~~G~L~~~~d~~v~l~~~~~ 131 (151)
T PRK14637 76 LEVSSPGIERVIK--NAAEFSIFVGETVKVWFECTGQWQVGTIAEADETCLVLTSDGV 131 (151)
T ss_pred EEEeCCCCCCCCC--CHHHHHHhCCCEEEEEECCCCcEEEEEEEEEeCCEEEEEECCE
Confidence 3444433222210 0000 0000110 001345 5999999999999997553
No 378
>PRK14452 acylphosphatase; Provisional
Probab=58.58 E-value=26 Score=31.53 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|+++++++|++.++.
T Consensus 35 FR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 35 FRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred hhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 4889999999875 7888999999999999999999999998876
No 379
>PRK14437 acylphosphatase; Provisional
Probab=58.34 E-value=22 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+.++.+++.|+.+.|++|++.|+.
T Consensus 38 FR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 38 FRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred chHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 4888999999874 7899999999999999999999999999984
No 380
>PRK14430 acylphosphatase; Provisional
Probab=57.94 E-value=18 Score=31.36 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|+.|++.|+.
T Consensus 24 ~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l~~ 64 (92)
T PRK14430 24 ADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWMEA 64 (92)
T ss_pred HHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHHHh
Confidence 78888876 7888999999999999999999999999965
No 381
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=57.59 E-value=41 Score=27.93 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=47.3
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC---CEEEEEEecCHHHH-HHHHHHhcc
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD---HTITLELTGDLDKM-VALQRLLEP 482 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~---~si~iE~TG~~~KI-dafi~lL~p 482 (514)
++.+.|.++.+.-..|+..+...||+|+++.. +...++..-....+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 45678888888889999999999999999965 47889999999999 788888875
No 382
>PRK14441 acylphosphatase; Provisional
Probab=57.54 E-value=19 Score=31.19 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=35.7
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++.++.|++.|+.
T Consensus 25 ~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 65 (93)
T PRK14441 25 ADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCHA 65 (93)
T ss_pred HHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHhh
Confidence 78888877 7899999999999999999999999999974
No 383
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=57.44 E-value=46 Score=37.03 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=53.3
Q ss_pred cccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC----CeeEEEEEEeCChHHHHHHHHHHhcCccEE
Q 047033 339 TSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE----GLSRITTVVPATDESISKLMQQLYKLIDLH 413 (514)
Q Consensus 339 ~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~----~iSRiTIVV~gde~~ieQI~kQL~KLidVi 413 (514)
..++....+++--++ +|-|.++..+|...+.||.-|.--++-.. .--.+.+-++++...++++++-|.+-....
T Consensus 34 ~~~~~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 111 (457)
T TIGR01269 34 EAAMQNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFIS 111 (457)
T ss_pred cccceeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhccc
Confidence 334444555555444 99999999999999999998887765322 234555666688888999999998765543
No 384
>PRK14424 acylphosphatase; Provisional
Probab=57.17 E-value=26 Score=30.68 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++.|++++++.|++.|+.
T Consensus 22 FR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 22 FRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred hHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 4788899998774 6788888889999999999999999999984
No 385
>PRK14432 acylphosphatase; Provisional
Probab=56.77 E-value=25 Score=30.65 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=35.0
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEe-CChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVT-GDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvT-G~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++. |++++++.|++.|+.
T Consensus 22 ~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~~~v~~f~~~l~~ 63 (93)
T PRK14432 22 EQIANNMKLKGFVKNLNDGRVEIVAFFNTKEQMKKFEKLLKN 63 (93)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHh
Confidence 77887766 8899999999999997 999999999999976
No 386
>PRK14440 acylphosphatase; Provisional
Probab=56.64 E-value=25 Score=30.38 Aligned_cols=39 Identities=5% Similarity=0.059 Sum_probs=35.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...++++.+++.|+++++++|++.|+.
T Consensus 23 ~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 63 (90)
T PRK14440 23 QIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 63 (90)
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhh
Confidence 78888876 7788889999999999999999999999985
No 387
>PRK08841 aspartate kinase; Validated
Probab=56.52 E-value=27 Score=37.60 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=47.3
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDL 412 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidV 412 (514)
-.+++.=++.||++.|+...+++.|+||.+++.+ + -+|+++++ ++..++.++.|++-...
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~----~~is~vv~--~~~~~~av~~lH~~f~~ 378 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P----QSSMLVLD--PANVDRAANILHKTYVT 378 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C----cEEEEEEe--HHHHHHHHHHHHHHHcC
Confidence 3577777788999999999999999999877743 2 56888887 46778888888776543
No 388
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=56.10 E-value=38 Score=26.08 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=32.1
Q ss_pred hHHHHHHhcCCEEEEecCC--EEEEEEeCChhHHHHHHHHh
Q 047033 208 QIRWLVDIFRAKIVDISEY--SLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 208 ~i~~l~~~F~akVVDvs~~--s~~iEvTG~~~kIdafi~~L 246 (514)
.|.+|-+.++++ +.+.++ ..++.++|+++.++...+++
T Consensus 21 ~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 21 NIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp HHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred cHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 578999999999 777765 78999999999999887754
No 389
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=55.83 E-value=56 Score=27.72 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCcceeeEeecCChhhHHhhe-------eeEEEecCc---cccccccccccccchhhHHHHHHhcCCEE
Q 047033 151 KVLQQVMEQLQKLVNVLKVEDLSNEPQVEREL-------MLIKVNADP---KFRAEIFLFPCLGVHLQIRWLVDIFRAKI 220 (514)
Q Consensus 151 ~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL-------~LiKV~~~~---~~r~EI~~~~~~~~~~~i~~l~~~F~akV 220 (514)
+....+.++-.+|-+++.|=--.=.+.+-+|+ -|+||++.. +.+.++ ..+|++..+|.+
T Consensus 4 ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~-----------~~~l~~~t~~~~ 72 (84)
T PF01985_consen 4 KERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEI-----------AEQLAEKTGAEV 72 (84)
T ss_dssp HHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHH-----------HHHHHHHHTEEE
T ss_pred HHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHH-----------HHHHHHHhCCEE
Confidence 44556666666666666654433233333332 256666643 333344 478999999999
Q ss_pred EEecCCEEEE
Q 047033 221 VDISEYSLTI 230 (514)
Q Consensus 221 VDvs~~s~~i 230 (514)
|++-.+.+++
T Consensus 73 V~~iG~~~vl 82 (84)
T PF01985_consen 73 VQVIGRTIVL 82 (84)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEE
Confidence 9999888775
No 390
>PRK02047 hypothetical protein; Provisional
Probab=55.14 E-value=89 Score=27.18 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=55.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCce--eeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYN--IESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyN--IeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
..+.+.+...|.++....|..++.++... -++++..++....+ +|+.+. .+++.++.|=+.|.+.-.|.-|
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk~v 90 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVKVV 90 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEEEe
Confidence 46899999999999999999999998555 55677777655544 565554 4577899999999988887543
No 391
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.08 E-value=35 Score=26.57 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=34.3
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
..+.||++.|+...|++ +||.-++.+.+ +-.+++++..++ .+.+++.|+|
T Consensus 11 ~~~~~~v~~~i~~~L~~--i~i~~i~~~~s--~~~is~~V~~~~--~~~a~~~Lh~ 60 (64)
T cd04917 11 ISETAGVEKRIFDALED--INVRMICYGAS--NHNLCFLVKEED--KDEVVQRLHS 60 (64)
T ss_pred ccCCcCHHHHHHHHHHh--CCeEEEEEecC--ccEEEEEEeHHH--HHHHHHHHHH
Confidence 34689999999999964 78877776665 335777776533 5555555544
No 392
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=54.23 E-value=59 Score=30.50 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec----ChHHHHHHHHHHhcCcceeeEee--cC---ChhhHHhhe
Q 047033 112 GMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG----TDKVLQQVMEQLQKLVNVLKVED--LS---NEPQVEREL 182 (514)
Q Consensus 112 GVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g----de~~ieQI~kQLeKLvdVikV~d--lt---~~~~V~REL 182 (514)
-+-..+..+....||.+..+.+........++|.++. +-+..+.+-+++...+|+..... |+ .+|-++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 3556778889999999999999887777788998874 44678888899988888543211 00 122233332
Q ss_pred e-----------eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCC
Q 047033 183 M-----------LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGD 235 (514)
Q Consensus 183 ~-----------LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~ 235 (514)
- ++||.+... ..=-+.|.|+++++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----------------~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----------------IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----------------cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 2 133322110 01124567899999999999998775
No 393
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=53.96 E-value=57 Score=27.68 Aligned_cols=35 Identities=34% Similarity=0.322 Sum_probs=24.4
Q ss_pred EEEEecCccc---H-HHHHHHHHhcCcEEEEecCCEEEE
Q 047033 430 LIKVAVNTTA---R-RDVLDIATIFRAKAVDVSDHTITL 464 (514)
Q Consensus 430 LIKV~~~~~~---R-~eI~~la~iFrakIVDvs~~si~i 464 (514)
||||++.... + .-..+|++..+|.+|++-.+++++
T Consensus 44 LvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~vl 82 (84)
T PF01985_consen 44 LVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTIVL 82 (84)
T ss_dssp EEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEEEE
T ss_pred eeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 4555554433 2 345568899999999999998876
No 394
>PRK14448 acylphosphatase; Provisional
Probab=53.18 E-value=30 Score=29.86 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=35.1
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++++.|++.|+.
T Consensus 22 ~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~~ 62 (90)
T PRK14448 22 WQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQH 62 (90)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHHh
Confidence 77888776 7888999999999999999999999999985
No 395
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=53.08 E-value=42 Score=27.70 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=47.0
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC---CEEEEEEecCHHHHHHHHHHhcc
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD---HTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~---~si~iE~TG~~~KIdafi~lL~p 482 (514)
++.+.|.++.+.-..|+..+..-||++.|... +...++......++..|...|+.
T Consensus 3 i~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 3 IEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 45677788888889999999999999999976 46889999999999888888875
No 396
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.07 E-value=41 Score=26.59 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=31.7
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe 161 (514)
.+.||++.|+...|.+-+ |.-+..+.+ +-.++++++.++ .+++++.|.
T Consensus 11 ~~~~gv~~~~~~~L~~~~--i~~i~~~~s--~~~is~vv~~~d--~~~av~~LH 58 (63)
T cd04920 11 RSLLHKLGPALEVFGKKP--VHLVSQAAN--DLNLTFVVDEDQ--ADGLCARLH 58 (63)
T ss_pred ccCccHHHHHHHHHhcCC--ceEEEEeCC--CCeEEEEEeHHH--HHHHHHHHH
Confidence 478999999999998855 444555444 335888887643 444544443
No 397
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=52.86 E-value=39 Score=40.18 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHA 380 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~T 380 (514)
+.++.+...|+||.|++|+++|+.-|.+|.+-.+..-
T Consensus 791 ~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 791 KTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred ceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 6899999999999999999999999999999766543
No 398
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=52.86 E-value=34 Score=37.97 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=55.2
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
|-|..+|+.|+..-|..+|..+++|+.++-+.+. -+|-+-++. +.....++++++.+.-.|..|..+.-
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 72 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI-----GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPF 72 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC-----CeEEEeCCCcChhhHHHHHHHHhcCCCccchhhhcc
Confidence 6788999999999999999999999999998554 235555553 44567899999999999888865443
No 399
>PRK14431 acylphosphatase; Provisional
Probab=52.17 E-value=34 Score=29.55 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=36.8
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...+ .+.+++.|+++.+++|++.|+.
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 3788889998775 66777755 6999999999999999999986
No 400
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.59 E-value=40 Score=40.10 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=38.8
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEE
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIV 145 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIV 145 (514)
.+..++.+...|+||.|++++++|+.-|.+|.|-.+..-... +.+.++
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt 838 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT 838 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence 367899999999999999999999999999998876644333 345554
No 401
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=51.26 E-value=1.5e+02 Score=24.91 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=53.7
Q ss_pred EEEEEEeCc-hhHHHHHHHHHhccC-ceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 102 TISVFVGDE-SGMINRIAGVFARRG-YNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 102 ~IsvlVeN~-pGVLsRIaglFsRRg-yNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
+|++.-+.+ +++..|++.+--... .=+-++.+-.+++.-.-++++.|+-+.++++.++|.++=.|..+.-
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 455555444 789999999987766 5555566666655555678899999999999999999999988764
No 402
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=50.93 E-value=60 Score=24.94 Aligned_cols=40 Identities=10% Similarity=0.309 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCcEEEEecCC--EEEEEEecCHHHHHHHHHHh
Q 047033 440 RRDVLDIATIFRAKAVDVSDH--TITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 440 R~eI~~la~iFrakIVDvs~~--si~iE~TG~~~KIdafi~lL 480 (514)
-..|.+|-+.++++ +++.++ .-.+.++|+++.++...+++
T Consensus 19 G~~i~~I~~~t~~~-I~i~~~~~~~~v~I~G~~~~v~~A~~~I 60 (60)
T PF00013_consen 19 GSNIKEIEEETGVK-IQIPDDDERDIVTISGSPEQVEKAKKMI 60 (60)
T ss_dssp GHHHHHHHHHHTSE-EEEESTTEEEEEEEEESHHHHHHHHHHH
T ss_pred CCcHHHhhhhcCeE-EEEcCCCCcEEEEEEeCHHHHHHHHhhC
Confidence 35788899999999 777765 77999999999999887764
No 403
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=50.84 E-value=18 Score=31.65 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred cCcEEEEecCC-EEEEEEecCHHHHHHHHHHhccC
Q 047033 450 FRAKAVDVSDH-TITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 450 FrakIVDvs~~-si~iE~TG~~~KIdafi~lL~py 483 (514)
+.+++.+.+.+ -++||+.++++|+++|++.|++.
T Consensus 53 h~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~~ 87 (101)
T PF02641_consen 53 HSARLLELSDDLPVVIEFIDTEEKIEAFLPELKEL 87 (101)
T ss_dssp --------TTS-EEEEEEEEEHHHHHHHHHHHCTT
T ss_pred cccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 44666777776 79999999999999999999863
No 404
>PRK14452 acylphosphatase; Provisional
Probab=50.75 E-value=33 Score=30.82 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.|++.|+++++++|++.++.
T Consensus 40 ~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~~ve~F~~~l~~ 80 (107)
T PRK14452 40 CRRALDLGLSGWVRNLSDGSVEVQAEGPPLALSELRAWCER 80 (107)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhc
Confidence 78888876 7899999999999999999999999888876
No 405
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=50.34 E-value=63 Score=37.66 Aligned_cols=67 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred EEEEEEEE-eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe---cCh----HHHHHHHHHHhcCccee
Q 047033 100 RHTISVFV-GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY---GTD----KVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 100 ~h~IsvlV-eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~---gde----~~ieQI~kQLeKLvdVi 167 (514)
.+.++|.. -+++|.|.|++|+++-.|.+|.|=.+.. +....-..+|. |.. .-.++....+.--+|+.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 36888888 9999999999999999999999988877 44444444443 332 22445556666666666
No 406
>PRK14450 acylphosphatase; Provisional
Probab=50.21 E-value=27 Score=30.00 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHhcC--CEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYS-LTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s-~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.+ +.+++.|+++.+++|++.|+.
T Consensus 22 ~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~~ 63 (91)
T PRK14450 22 RTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLRS 63 (91)
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHhh
Confidence 77888766 7888888885 999999999999999999984
No 407
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=49.73 E-value=1.2e+02 Score=27.79 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=61.2
Q ss_pred HHHHHhccCceeeeEEeeecCCCcEEEEEEecC----hHHHHHHHHHHhcCcceeeEee--cC---ChhhHHhhee----
Q 047033 117 IAGVFARRGYNIESLAVGLNKDKALFTIVVYGT----DKVLQQVMEQLQKLVNVLKVED--LS---NEPQVERELM---- 183 (514)
Q Consensus 117 IaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd----e~~ieQI~kQLeKLvdVikV~d--lt---~~~~V~REL~---- 183 (514)
|..+....||.+-.+.+.......+++|.++.+ -+..+++.+.++..+|+..... |. .+|-++|.|-
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~~~~ 81 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKSPRD 81 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SSHHH
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCCHHH
Confidence 345677889999999998887766788888642 3567788888888888832210 00 1222333321
Q ss_pred -------eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhH
Q 047033 184 -------LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGK 238 (514)
Q Consensus 184 -------LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~k 238 (514)
.++|..... ..=-+.|.|++.+++++++++++.|...+
T Consensus 82 ~~~~iG~~v~v~~~~~-----------------~~~~~~~~G~L~~~~~~~i~l~~~~~~~~ 126 (141)
T PF02576_consen 82 FERFIGRKVKVKLKQP-----------------VNGRKEFEGKLLEVDEDEITLEVEGKGKK 126 (141)
T ss_dssp HHHH-SEEEEEE-SS------------------SSS-SEEEEEEEEEETTEEEEEEE-SS-E
T ss_pred HHHhcCCeEEEEEecc-----------------CCCcEEEEEEEEEEeCCEEEEEECCccce
Confidence 123322110 01124578999999999999999988543
No 408
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=49.24 E-value=60 Score=27.27 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCc
Q 047033 354 SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLI 410 (514)
Q Consensus 354 ~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLi 410 (514)
.+|+-.+|..+++|.+.+|-+-+. +. -.||+.+.++.+.++++.+.|+|..
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K~~----nA--Ntit~yl~~~~k~~~r~~~~Le~~~ 64 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAKDT----NA--NTITHYLAGSLKTIKRLTEDLENRF 64 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEEec----CC--CeEEEEEEcCHHHHHHHHHHHHHhC
Confidence 478999999999999999988622 22 2499999999999999999998865
No 409
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=49.22 E-value=52 Score=28.75 Aligned_cols=52 Identities=19% Similarity=0.452 Sum_probs=39.2
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeEEeeecCCCcEEEEEEec-ChHHHHHHH
Q 047033 101 HTISVFVGDESGMIN----RIAGVFARRGYN-IESLAVGLNKDKALFTIVVYG-TDKVLQQVM 157 (514)
Q Consensus 101 h~IsvlVeN~pGVLs----RIaglFsRRgyN-IeSLtVg~Ted~~~~TIVv~g-de~~ieQI~ 157 (514)
+...|+|..+||||+ -|.+-+.+.||+ +..+.+| .+|.+.+++ +++..++.+
T Consensus 2 ~~v~V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~g-----K~~el~ld~~~~e~a~~~v 59 (83)
T COG1828 2 YKVRVYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVG-----KVIELELDAESEEKAEEEV 59 (83)
T ss_pred eEEEEEEEeCCcccCchhHHHHHHHHHcCCcccceeeee-----eEEEEEecCcchhHHHHHH
Confidence 567899999999996 688999999998 8877755 368888886 343343333
No 410
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=49.21 E-value=50 Score=27.81 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=36.9
Q ss_pred EEEEEEeCcchHHHH----HHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHH
Q 047033 346 TLSMLVNDSPGVLNI----VTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQL 406 (514)
Q Consensus 346 tLSIlVeN~pGVL~R----ItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL 406 (514)
...|.|..+|||+.- |..-....||+ ++++.+|. .+++.++|++ +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGK-------VIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346778899999965 44545557998 88877764 3677677654 4566666555
No 411
>PRK14437 acylphosphatase; Provisional
Probab=49.17 E-value=28 Score=31.34 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.|++.|+++.|++|++.|+.
T Consensus 43 ~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~~ 83 (109)
T PRK14437 43 RKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 83 (109)
T ss_pred HHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 88888886 7799999999999999999999999999984
No 412
>PRK14443 acylphosphatase; Provisional
Probab=48.62 E-value=29 Score=30.40 Aligned_cols=39 Identities=8% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++++.|++.|+.
T Consensus 24 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 24 KHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred HHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 77888776 7899999999999999999999999999976
No 413
>PRK14640 hypothetical protein; Provisional
Probab=48.25 E-value=50 Score=31.16 Aligned_cols=109 Identities=13% Similarity=0.162 Sum_probs=71.2
Q ss_pred HHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC----hHHHHHHHHHHhcCcceeeEee--cC---ChhhHHhhee
Q 047033 113 MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT----DKVLQQVMEQLQKLVNVLKVED--LS---NEPQVERELM 183 (514)
Q Consensus 113 VLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd----e~~ieQI~kQLeKLvdVikV~d--lt---~~~~V~REL~ 183 (514)
+-..+.-+....||-+..+.........+++|.++.+ -+..+.+-++|+.++|+..... |. .+|-++|.|-
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~ 87 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDRPLF 87 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCC
Confidence 4556778888999999999987766666788888743 4678889999999998642210 00 1233333331
Q ss_pred -----------eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhH
Q 047033 184 -----------LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGK 238 (514)
Q Consensus 184 -----------LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~k 238 (514)
.+||++... ..=-+.|.|++.++.++.+++++-|.+.+
T Consensus 88 ~~~~f~r~~G~~v~V~l~~~-----------------~~~~k~~~G~L~~v~~~~v~l~~~~~~~~ 136 (152)
T PRK14640 88 KVAQFEKYVGQEAAVTLRMA-----------------TNNRRKFKGVIKAVQGDMITLTVDGKDEV 136 (152)
T ss_pred CHHHHHHhCCCeEEEEEecc-----------------cCCceEEEEEEEEEeCCEEEEEECCeEEE
Confidence 233332110 01225688999999999999998776533
No 414
>PRK14451 acylphosphatase; Provisional
Probab=47.99 E-value=25 Score=30.30 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=35.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++.+++.|++++|++|++.|+.
T Consensus 23 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~ 63 (89)
T PRK14451 23 KKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQK 63 (89)
T ss_pred HHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHhh
Confidence 77888776 7888999999999999999999999999984
No 415
>PRK14431 acylphosphatase; Provisional
Probab=47.97 E-value=33 Score=29.61 Aligned_cols=38 Identities=8% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+ ++.+++.|+++.+++|++.|+.
T Consensus 22 ~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 22 QRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred HHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 77888776 67878755 6999999999999999999986
No 416
>PRK05783 hypothetical protein; Provisional
Probab=47.84 E-value=84 Score=27.36 Aligned_cols=60 Identities=7% Similarity=0.118 Sum_probs=41.0
Q ss_pred eEEEEEEEEeCchhHHH----HHHHHHhccCce-eeeEEeeecCCCcEEEEEEecC-hHHHHHHHHHH-hcC
Q 047033 99 RRHTISVFVGDESGMIN----RIAGVFARRGYN-IESLAVGLNKDKALFTIVVYGT-DKVLQQVMEQL-QKL 163 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLs----RIaglFsRRgyN-IeSLtVg~Ted~~~~TIVv~gd-e~~ieQI~kQL-eKL 163 (514)
|.+.+.|+|..+||||. -|.+-+.++||+ ++++.+| .++.+.++++ ++..++.++++ +||
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvG-----K~iel~l~~~~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAG-----KYLVFKIEANSPEEAKELALKIAREG 67 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEee-----EEEEEEEcCCCHHHHHHHHHHHHHhc
Confidence 45788999999999995 578888888884 7777665 2577888764 33333333333 444
No 417
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=46.41 E-value=1.1e+02 Score=25.86 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=51.4
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhc-cCceeeeEEeeecCCCcEEEEEEec-ChHHHHHHHHHHhcCcceeeEee
Q 047033 100 RHTISVFVGDESGMINRIAGVFAR-RGYNIESLAVGLNKDKALFTIVVYG-TDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsR-RgyNIeSLtVg~Ted~~~~TIVv~g-de~~ieQI~kQLeKLvdVikV~d 171 (514)
.|+-|+.|.=+|+-+..+..-+.. -|..|. ..++.|++-+++.+ +.+.+.+..++|+.|-.|+.+.-
T Consensus 3 ~hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~~GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~l 71 (79)
T PF03927_consen 3 MHISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDEDGKIVVTIEAESSEEEVDLIDAINALPGVLSASL 71 (79)
T ss_dssp SCEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEETTTEEEEEEEESSHHHHHHHHHHHCCSTTEEEEEE
T ss_pred eeEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCCCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 477899999999999999988876 455443 33344888888874 56788999999999999998863
No 418
>PRK05925 aspartate kinase; Provisional
Probab=46.17 E-value=3.9e+02 Score=29.44 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=67.7
Q ss_pred chhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC---hHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEE
Q 047033 110 ESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT---DKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIK 186 (514)
Q Consensus 110 ~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd---e~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiK 186 (514)
.+|.++||.+.|.+.|+||+.++.. ..-++++++.+ +..++.+.+.+.++- +++ ++..+++|-
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~s~----~~sis~~i~~~~~~~~~~~~l~~~l~~~~---~i~-------~~~~~a~Vs 376 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVMAQ----NLGVYFTIDDDDISEEYPQHLTDALSAFG---TVS-------CEGPLALIT 376 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEecc----CCEEEEEEechhccHHHHHHHHHHhcCCc---eEE-------EECCEEEEE
Confidence 5788999999999999999988533 12466666643 223444444444321 121 344688877
Q ss_pred EecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 187 VNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 187 V~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
|--.......+ --.+.......+-+|.-++....-|-+.=+.+..++.++.|.
T Consensus 377 vVG~gm~~~~v--------~~~~~~aL~~~~Ini~~i~~s~~~is~vV~~~d~~~av~~LH 429 (440)
T PRK05925 377 MIGAKLASWKV--------VRTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLH 429 (440)
T ss_pred EeCCCcccccH--------HHHHHHHHhhCCCCEEEEECCCceEEEEEehHHHHHHHHHHH
Confidence 74432111222 002244455666788888776666655555566655555543
No 419
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.71 E-value=3.3e+02 Score=27.32 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=57.2
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeee--cCC-CcEEEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGL--NKD-KALFTIVVYGTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~--Ted-~~~~TIVv~gde~~ieQI~kQLeKLvdVikV 169 (514)
-.+.+.+++-|.|-.....+|..+-.+.|-.|.+-.... ..+ ....++++.-..+.++....+|.++=.|..-
T Consensus 48 ii~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~ 123 (262)
T PF14257_consen 48 IIKTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSR 123 (262)
T ss_pred EEEEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeee
Confidence 345789999999999999999999999998899998862 222 2335666665667899999999988766543
No 420
>PRK04998 hypothetical protein; Provisional
Probab=44.84 E-value=1.5e+02 Score=25.41 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=49.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCccee
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVi 167 (514)
..+.+.+...+.++..+.|..+|.+..-.-+.+++-++....+ +|+.+. .+++.++.|=+.|.+.-.|+
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 4689999999999999999999976533323355545533333 555544 45778889999998887775
No 421
>PRK14446 acylphosphatase; Provisional
Probab=44.38 E-value=31 Score=29.89 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.|++.|+++.++.|++.|+.
T Consensus 22 ~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~l~~f~~~l~~ 62 (88)
T PRK14446 22 RERAVALGLVGHARNQADGSVEVVAAGSAAALEALEAWLWQ 62 (88)
T ss_pred HHHHeeCCeEEEEEECCCCCEEEEEEeCHHHHHHHHHHHhh
Confidence 77888876 7789999999999999999999999999983
No 422
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=43.95 E-value=59 Score=37.91 Aligned_cols=87 Identities=14% Similarity=0.086 Sum_probs=60.3
Q ss_pred EEEEEEE-eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChH----HHHHHHHHHhcCccEEEEEec
Q 047033 345 HTLSMLV-NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDE----SISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 345 htLSIlV-eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~----~ieQI~kQL~KLidVikV~dl 418 (514)
+.++|.. -|+||.|.|++||.+-.|.+|.|-.+.. +...+..+++.-. |..- -.+++...++--+++.. -
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 622 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P 622 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence 6888888 9999999999999999999999988877 6666766666644 3322 34555556666666662 2
Q ss_pred CCchhhheeeEEEEEecC
Q 047033 419 THLPFAERELMLIKVAVN 436 (514)
Q Consensus 419 t~~~~V~REL~LIKV~~~ 436 (514)
.+.....-. .++-|++.
T Consensus 623 ~~~~~~~~~-~~~e~r~~ 639 (693)
T PRK00227 623 GITATFWHG-NILEVRTE 639 (693)
T ss_pred CCCceEeeC-cEEEEEeC
Confidence 222333333 46677765
No 423
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=43.26 E-value=71 Score=26.89 Aligned_cols=54 Identities=17% Similarity=0.422 Sum_probs=37.6
Q ss_pred EEEEEEeCcchHHHH----HHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHH
Q 047033 346 TLSMLVNDSPGVLNI----VTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQL 406 (514)
Q Consensus 346 tLSIlVeN~pGVL~R----ItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL 406 (514)
...|.|..+|||+.- |..-+.+.||+ ++++.+|. .+++.++|+ .+.++++.++|
T Consensus 2 ~~~V~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k-------~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T PRK05974 2 KVKVTVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGK-------YFELELEGESEEKAEADLKEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEE-------EEEEEEcCCchhhhHHHHHHHHHHh
Confidence 567888999999965 55666668998 88877764 367766763 33456665555
No 424
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=43.11 E-value=26 Score=30.62 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=27.4
Q ss_pred cCCEEEEecCC-EEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeee
Q 047033 216 FRAKIVDISEY-SLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALR 263 (514)
Q Consensus 216 F~akVVDvs~~-s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~ 263 (514)
+.++..+.+++ -++||+..+++|+++|++.|++. .+.|.+.+.
T Consensus 53 h~~~~~~l~~~lPvvIe~id~~eki~~~l~~l~~~-----~~~glit~~ 96 (101)
T PF02641_consen 53 HSARLLELSDDLPVVIEFIDTEEKIEAFLPELKEL-----VKDGLITLE 96 (101)
T ss_dssp --------TTS-EEEEEEEEEHHHHHHHHHHHCTT------SSSEEEEE
T ss_pred cccchhhhcCCCCEEEEEEcCHHHHHHHHHHHHHH-----cCCCEEEEE
Confidence 44667777777 79999999999999999999853 334555554
No 425
>PRK14646 hypothetical protein; Provisional
Probab=43.07 E-value=1.3e+02 Score=28.61 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC------hHHHHHHHHHHhcCcceeeEeecC-----ChhhHHh
Q 047033 112 GMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT------DKVLQQVMEQLQKLVNVLKVEDLS-----NEPQVER 180 (514)
Q Consensus 112 GVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd------e~~ieQI~kQLeKLvdVikV~dlt-----~~~~V~R 180 (514)
-+...+..+....||-+-.+.+.....+.+++|.++.+ -+.-+.+-++|..++|+.....-. .+|-++|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR 87 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD 87 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC
Confidence 45677888899999999999988776666788887743 356788899999999864332100 1333444
Q ss_pred he-----------eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCCh
Q 047033 181 EL-----------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDP 236 (514)
Q Consensus 181 EL-----------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~ 236 (514)
.| -.+||++... ..=-+.|.|++.++.++.+++++-|..
T Consensus 88 pL~~~~df~r~~G~~v~V~l~~~-----------------~~~~~~~~G~L~~~~~~~v~l~~~g~~ 137 (155)
T PRK14646 88 ELTSERDFKTFKGFPVNVELNQK-----------------NSKIKFLNGLLYEKSKDYLAINIKGKI 137 (155)
T ss_pred cCCCHHHHHHhCCCEEEEEEecC-----------------cCCeEEEEEEEEEEeCCEEEEEECCEE
Confidence 33 2334433110 011256889999999999999987654
No 426
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=42.28 E-value=65 Score=26.70 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=44.2
Q ss_pred eeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecC---CEEEEEEeCChhHH-HHHHHHhcc
Q 047033 182 LMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE---YSLTIEVTGDPGKM-VAVQRNLSK 248 (514)
Q Consensus 182 L~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~---~s~~iEvTG~~~kI-dafi~~L~~ 248 (514)
++.+.|.++.++-..| +......||+|++... +...++..-.-..+ ..|...|+.
T Consensus 3 i~~v~i~vP~e~~G~V------------~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s 61 (80)
T cd03709 3 FVKATIITPSEYLGAI------------MELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKS 61 (80)
T ss_pred EEEEEEEeCHHhhHHH------------HHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHh
Confidence 3556777777777777 8999999999999976 47889999998988 688877764
No 427
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=41.92 E-value=65 Score=25.63 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=30.6
Q ss_pred hHHHHHHhcCCEEEEecCCEEEEEEeCC-hhHHHHHHHHh
Q 047033 208 QIRWLVDIFRAKIVDISEYSLTIEVTGD-PGKMVAVQRNL 246 (514)
Q Consensus 208 ~i~~l~~~F~akVVDvs~~s~~iEvTG~-~~kIdafi~~L 246 (514)
.|.+|.+.|+++ +++.++. .|.++|+ ++.+++..+.+
T Consensus 23 ~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 23 TIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred HHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHh
Confidence 578999999999 5788764 6999998 88888877665
No 428
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=41.82 E-value=69 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCcEEEEecCCEEEEEEecC-HHHHHHHHHHhc
Q 047033 441 RDVLDIATIFRAKAVDVSDHTITLELTGD-LDKMVALQRLLE 481 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~si~iE~TG~-~~KIdafi~lL~ 481 (514)
.-|-+|.+.|+++ +++.++. .+.++|+ ++++++..++++
T Consensus 22 ~~ik~I~~~tg~~-I~i~~~g-~v~I~G~~~~~v~~A~~~I~ 61 (61)
T cd02393 22 KTIKKIIEETGVK-IDIEDDG-TVYIAASDKEAAEKAKKMIE 61 (61)
T ss_pred hHHHHHHHHHCCE-EEeCCCC-EEEEEeCCHHHHHHHHHHhC
Confidence 4678899999999 6788765 6999998 899988877653
No 429
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=41.60 E-value=44 Score=39.39 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=44.1
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCc----cEEEEEec
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLI----DLHEVRDL 418 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLi----dVikV~dl 418 (514)
.+.||+++|+...+++.|+||.-++.|.+|. .|+++++.+ ..++.++.|++-. ..++|--+
T Consensus 407 ~~~~gv~arif~aL~~~~InI~~IsqgsSe~----~Is~vV~~~--d~~~al~~LH~~f~~~~~~~~i~l~ 471 (819)
T PRK09436 407 RTHPGIAAKFFSALGRANINIVAIAQGSSER----SISVVIDND--DATKALRACHQSFFLSDQVLDVFVI 471 (819)
T ss_pred ccCcCHHHHHHHHHHHCCCCEEEEEeccccc----eEEEEEcHH--HHHHHHHHHHHHHhcccccccEEEE
Confidence 4689999999999999999999999888765 388888743 3445555554432 45555444
No 430
>PRK00907 hypothetical protein; Provisional
Probab=40.94 E-value=1.8e+02 Score=25.60 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=53.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCc--eeeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCccee
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGY--NIESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgy--NIeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVi 167 (514)
-.+.|.|.=.++++....|..++.+.+- +=+++++-++....+ +|+++. ..++.++.|=+.|.+.-.|.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 4689999999999999999999988765 455666667655444 566555 35678999999998888774
No 431
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=40.52 E-value=1.2e+02 Score=33.85 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEeCc-hhHHHHHHHHHhccCceeeeEEeeecCCC-----cE-EEEEEecChHHHHHHHHHHhcCcceeeEe
Q 047033 104 SVFVGDE-SGMINRIAGVFARRGYNIESLAVGLNKDK-----AL-FTIVVYGTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 104 svlVeN~-pGVLsRIaglFsRRgyNIeSLtVg~Ted~-----~~-~TIVv~gde~~ieQI~kQLeKLvdVikV~ 170 (514)
.+.+.++ +|-|.++..+|...++||.-|---++... .. +.+-++++...++++++-|.+-....++.
T Consensus 41 ~~~~~~~~~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (457)
T TIGR01269 41 QFYIRTKEISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFISGIN 114 (457)
T ss_pred EEEeccCcchhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcccccc
Confidence 3334433 99999999999999999998887765322 12 55556677888999999998866544333
No 432
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=39.62 E-value=99 Score=25.72 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=39.2
Q ss_pred EEEEEEeC---cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHh
Q 047033 346 TLSMLVND---SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLY 407 (514)
Q Consensus 346 tLSIlVeN---~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~ 407 (514)
.++|.|.| .+|.=.+++..+..+||.+... +...... ..=+|... ++....++|.++|.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~--~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEV--GNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeec--CCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 35566666 5788999999999999999544 4443332 33333333 56667777777774
No 433
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=39.43 E-value=99 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=46.1
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC---CEEEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD---HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~---~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|+...+.-||++++... +...++......++..|-..|+.+
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~ 61 (79)
T cd01514 3 IMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSL 61 (79)
T ss_pred EEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhh
Confidence 46778888888788999999999999999866 557788888888888888877753
No 434
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=39.32 E-value=79 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC
Q 047033 358 LNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT 395 (514)
Q Consensus 358 L~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd 395 (514)
++--..-+.+|||+.+-+...+++..++.+.|+.|.|.
T Consensus 69 ~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~a~~~I~G~ 106 (115)
T PF03462_consen 69 FRMYQRYAERRGWKVEVLDYSPGEEGGIKSATLEISGE 106 (115)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEE-SSSSEEEEEEEEEST
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccceeEEEEEEEcC
Confidence 44445556789999999999999999999999999986
No 435
>PRK14424 acylphosphatase; Provisional
Probab=37.52 E-value=44 Score=29.27 Aligned_cols=39 Identities=5% Similarity=0.082 Sum_probs=34.7
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|..++ |.|-...+.++-|++.|++++++.|++.|+.
T Consensus 27 ~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~~ 67 (94)
T PRK14424 27 VREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLRH 67 (94)
T ss_pred HHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 77888776 6788888889999999999999999999984
No 436
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=37.20 E-value=67 Score=26.47 Aligned_cols=54 Identities=6% Similarity=0.124 Sum_probs=43.2
Q ss_pred eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 047033 183 MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE---YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 183 ~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~---~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
+.+.|.++.++-..| +.....-||+|.|... +..+++....-.++..|...|+.
T Consensus 4 ~~v~I~~P~~~~g~V------------~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs 60 (79)
T cd03710 4 EELTIDVPEEYSGAV------------IEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLT 60 (79)
T ss_pred EEEEEEeCchhhHHH------------HHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHh
Confidence 455666677676677 8999999999999887 45888999988888888877764
No 437
>PRK14634 hypothetical protein; Provisional
Probab=35.92 E-value=1.5e+02 Score=28.25 Aligned_cols=109 Identities=9% Similarity=0.126 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC------hHHHHHHHHHHhcCcceeeEee--cC---ChhhHH
Q 047033 111 SGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT------DKVLQQVMEQLQKLVNVLKVED--LS---NEPQVE 179 (514)
Q Consensus 111 pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd------e~~ieQI~kQLeKLvdVikV~d--lt---~~~~V~ 179 (514)
.-+-..+..+....||-+..+.+.......++.|.++.+ -+..+.+-++|..+.|+..... |+ .+|-++
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQLLTEAYVLEISSPGIG 86 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 345566777788999999999987666666788888732 2467888999999998643211 00 122333
Q ss_pred hhee-----------eEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCCh
Q 047033 180 RELM-----------LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDP 236 (514)
Q Consensus 180 REL~-----------LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~ 236 (514)
|.|- ++||++.. . ..=-+.|.|+++++.++.+++++-|..
T Consensus 87 RpL~~~~~f~r~~G~~V~V~l~~--------------~---~~~~k~~~G~L~~~~~~~v~l~~~~~~ 137 (155)
T PRK14634 87 DQLSSDRDFQTFRGFPVEVSHRD--------------D---DGSEQRLEGLLLERNEDHLQINIRGRI 137 (155)
T ss_pred CcCCCHHHHHHhCCCeEEEEEec--------------C---CCCeEEEEEEEEEEeCCEEEEEECCEE
Confidence 3321 12332210 0 011256889999999999999986543
No 438
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.59 E-value=2.7e+02 Score=23.48 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=52.8
Q ss_pred EEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcEE--EEEEecChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 101 HTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKALF--TIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 101 h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~~--TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
+.+.+..--+||.|-+....+. .+.||.-..=-... +.+.+ -|-+.+ . ..++++++|+++= ..+.|+++.+.
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~-p~~~ITeF~YR~~~~~~a~vlvGi~~~~-~-~~~~l~~~l~~~g--~~~~dls~ne~ 76 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELL-PKWNITLFHYRNQGSDYGRVLVGIQVPD-A-DLDELKERLDALG--YPYQEETDNPA 76 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhC-CCCeEeEEEEecCCCCceeEEEEEEeCh-H-HHHHHHHHHHHcC--CCeEECCCCHH
Confidence 6788888899999999999994 47888877765432 33443 344443 3 7889999998864 66788887655
Q ss_pred H
Q 047033 178 V 178 (514)
Q Consensus 178 V 178 (514)
.
T Consensus 77 ~ 77 (81)
T cd04907 77 Y 77 (81)
T ss_pred H
Confidence 4
No 439
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=35.44 E-value=1.9e+02 Score=24.47 Aligned_cols=65 Identities=20% Similarity=0.332 Sum_probs=49.8
Q ss_pred EEEEEEEeCcchHHHHHHHHhhc-cCceeeeEeeeecCCCCeeEEEEEEeC-ChHHHHHHHHHHhcCccEEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFAR-RGYNIQSLAVGHAETEGLSRITTVVPA-TDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsR-RGyNIeSLtVg~Te~~~iSRiTIVV~g-de~~ieQI~kQL~KLidVikV~ 416 (514)
|+-|+.|.=+|+-+..+..-+.. -|..|. ..++ + .||.+|+.+ +.+.+.+..++|+.|..|+.+.
T Consensus 4 hIss~vV~~~p~~~~~v~~~l~~~~gvEVh-----~~~~-~-GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 4 HISSLVVHARPERLEEVAEALAAIPGVEVH-----AVDE-D-GKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp CEEEEEEEE-CCCHHHHHHHHCCSTTEEEE-----EEET-T-TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred eEEEEEEEECchhHHHHHHHHHcCCCcEEE-----eeCC-C-CeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 77899999999999999888876 444332 2222 2 679999984 5678999999999999999885
No 440
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=35.33 E-value=1.4e+02 Score=26.82 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEEEe-cCcccHHHHH-HHHHhcCcEEEEecCCEEEEEEecC
Q 047033 395 TDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVA-VNTTARRDVL-DIATIFRAKAVDVSDHTITLELTGD 469 (514)
Q Consensus 395 de~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIKV~-~~~~~R~eI~-~la~iFrakIVDvs~~si~iE~TG~ 469 (514)
++..+.+|-.||+ .|||.=|||- ...+.|.++. .||+.-+|..|++-..++++---|.
T Consensus 29 te~vi~Ei~~aL~-----------------~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~~vlyr~~~ 88 (97)
T COG1534 29 TEGVIKEIDRALE-----------------ARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKTLVLYRESK 88 (97)
T ss_pred CHHHHHHHHHHHH-----------------hCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeEEEEEecCc
Confidence 5666666666664 3554333332 2223455544 5889999999999999999877443
No 441
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=35.04 E-value=78 Score=34.80 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=44.1
Q ss_pred chHHHHHHHHhhccC--ceeeeEeeeecC-CCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 355 PGVLNIVTGVFARRG--YNIQSLAVGHAE-TEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 355 pGVL~RItgLFsRRG--yNIeSLtVg~Te-~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
.|+|+|+....-.-| |.|+.+.+|.+. ++...||++.-+ |++.+++|..||.++
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~-~~~~l~~Il~~l~~~ 71 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSAR-DHQHLEEILTELIDL 71 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecC-CHHHHHHHHHHHHHc
Confidence 588999988887766 999999999765 567777775554 788999999999876
No 442
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=34.34 E-value=1.3e+02 Score=24.51 Aligned_cols=56 Identities=20% Similarity=0.105 Sum_probs=45.9
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC--CEEEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD--HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~--~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|++....-||+|++... +...|+......++..|-..|+.+
T Consensus 3 i~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~ 60 (78)
T cd03711 3 YLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSY 60 (78)
T ss_pred eEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhh
Confidence 45677888888889999999999999999864 567788888888888888887753
No 443
>PRK14637 hypothetical protein; Provisional
Probab=34.26 E-value=3e+02 Score=26.12 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=69.6
Q ss_pred chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEE-EEecC---Cchhhheee
Q 047033 355 PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA--TDESISKLMQQLYKLIDLHE-VRDLT---HLPFAEREL 428 (514)
Q Consensus 355 pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g--de~~ieQI~kQL~KLidVik-V~dlt---~~~~V~REL 428 (514)
-|--..+..+....||.+.-+.........+-|+.|=-++ +-+..+++.++|...+|+.- ..+++ ..|-++|.|
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldRpL 87 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIERVI 87 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCC
Confidence 4667788889999999999999988777777666654221 34678888888877776421 11111 023344444
Q ss_pred -----------EEEEEecCcccHHHHHHHHHhc-CcEEEEecCCEEEEEEecC
Q 047033 429 -----------MLIKVAVNTTARRDVLDIATIF-RAKAVDVSDHTITLELTGD 469 (514)
Q Consensus 429 -----------~LIKV~~~~~~R~eI~~la~iF-rakIVDvs~~si~iE~TG~ 469 (514)
-+|||+.. .+ ..| .|.+.++.++.++++..|.
T Consensus 88 ~~~~~f~r~~G~~V~V~l~--~~-------~~~~~G~L~~~~d~~v~l~~~~~ 131 (151)
T PRK14637 88 KNAAEFSIFVGETVKVWFE--CT-------GQWQVGTIAEADETCLVLTSDGV 131 (151)
T ss_pred CCHHHHHHhCCCEEEEEEC--CC-------CcEEEEEEEEEeCCEEEEEECCE
Confidence 24555541 11 226 6999999999999997553
No 444
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=34.17 E-value=2.8e+02 Score=23.22 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=52.1
Q ss_pred EEEEEEeCc-chHHHHHHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 346 TLSMLVNDS-PGVLNIVTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 346 tLSIlVeN~-pGVL~RItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
+|++.-+.+ +++-.|++.+--...=- +-++.+--.++.- =-++++.|+-+.++++.+.|.++-.|..+.-
T Consensus 3 ~it~vydh~~~~l~~~l~~iqH~~~~~I~s~~Hvhl~~~~C--lEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 3 TITIVYDHHKRELSERLTEIQHEYHDIIISSLHVHLDHDNC--LEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp EEEEEEETTSTTHHHHHHHHHHHTTTCEEEEEEEEESSSEE--EEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHhCcCeEEEeeEEeecCCCe--EEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 566666665 78999999997766644 4445555554332 2567789999999999999999999988763
No 445
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=33.43 E-value=1.2e+02 Score=24.68 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC--CEEEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD--HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~--~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|++....-||++++... +...+.......++..|-..|+.+
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~ 60 (78)
T cd03713 3 IMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSL 60 (78)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhh
Confidence 45677888877778999999999999999865 467788888888888888888753
No 446
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=32.65 E-value=57 Score=36.14 Aligned_cols=53 Identities=30% Similarity=0.469 Sum_probs=42.4
Q ss_pred EEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 350 LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 350 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.++|..|.|.|+-.+++..|+||+=|+-|.++.. |..+++ |...++-++-|+|
T Consensus 480 nvq~ss~i~~rmF~~l~e~giNvqMISQGAskvN----IS~ivn--e~ea~k~v~~lH~ 532 (559)
T KOG0456|consen 480 NVQNSSGILERMFCVLAENGINVQMISQGASKVN----ISCIVN--EKEAEKCVQALHK 532 (559)
T ss_pred hhhhhhHHHHHHHHHHHhcCcceeeeccccccce----EEEEEC--hHHHHHHHHHHHH
Confidence 3789999999999999999999999998876542 555555 6667777777765
No 447
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=32.17 E-value=1.4e+02 Score=22.34 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=38.7
Q ss_pred ecCcccHHHHHHHHHhcCcEEEEec-CCEEEEEEecCHHHHHHHHHHhcc
Q 047033 434 AVNTTARRDVLDIATIFRAKAVDVS-DHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 434 ~~~~~~R~eI~~la~iFrakIVDvs-~~si~iE~TG~~~KIdafi~lL~p 482 (514)
.++-..-..+..+++.+++.|+|.. .+.+.+.+.=++++.++|.+.|..
T Consensus 2 ~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 2 SCDYSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp EE-CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHH
T ss_pred EechhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHH
Confidence 3455667788999999999998872 334999999999999999988754
No 448
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=32.12 E-value=1.6e+02 Score=26.10 Aligned_cols=53 Identities=30% Similarity=0.292 Sum_probs=35.6
Q ss_pred ChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEEEecC-cccH-HHHHHHHHhcCcEEEEecCCEEEE
Q 047033 395 TDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVN-TTAR-RDVLDIATIFRAKAVDVSDHTITL 464 (514)
Q Consensus 395 de~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIKV~~~-~~~R-~eI~~la~iFrakIVDvs~~si~i 464 (514)
++..++++-.+|++ |||.=|||.-+ .+.+ .-+.+||+..+|.+|++=.+++++
T Consensus 28 t~~vi~ei~~aL~~-----------------hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 28 TEGVIKEIEQALEH-----------------RELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred CHHHHHHHHHHHHh-----------------CCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccEEEE
Confidence 56677777777653 56544444322 2334 346679999999999998888776
No 449
>PRK14632 hypothetical protein; Provisional
Probab=31.92 E-value=2.3e+02 Score=27.42 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEec----ChHHHHHHHHHHhcCcceeeEeecC-----ChhhHHhhe-
Q 047033 113 MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYG----TDKVLQQVMEQLQKLVNVLKVEDLS-----NEPQVEREL- 182 (514)
Q Consensus 113 VLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~g----de~~ieQI~kQLeKLvdVikV~dlt-----~~~~V~REL- 182 (514)
+-..+.-+....||-+..+.+.. .....++|.++. +-+..+.+-++|..++|+.....-. .+|-++|.|
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL~ 88 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLERPFF 88 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCCcCC
Confidence 34556777889999999999874 333468888874 3467888999999999865432100 123333333
Q ss_pred ----------eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCC
Q 047033 183 ----------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGD 235 (514)
Q Consensus 183 ----------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~ 235 (514)
=++||.+.... .+. .=-+.|.|+++++.++.+++++-|+
T Consensus 89 ~~~~f~r~iG~~V~V~l~~~~-~~~-------------~g~k~~~G~L~~v~~~~i~l~~~~~ 137 (172)
T PRK14632 89 RAEQMSPYVGRQIELTLIDPT-PEW-------------PGRRKFRGELLAVEGDTVVLRPEGA 137 (172)
T ss_pred CHHHHHHhCCCEEEEEEeccc-ccc-------------CCceEEEEEEEEEeCCEEEEEEcCc
Confidence 12444332100 000 0135788999999999999998654
No 450
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=31.51 E-value=3.7e+02 Score=24.55 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=69.7
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc--CccEEEEEecCCchhhheeeEE
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK--LIDLHEVRDLTHLPFAERELML 430 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K--LidVikV~dlt~~~~V~REL~L 430 (514)
|+|=-.+||=..+..-||+|+- +. ....+...++|+|.+ .+ .+.|.-|-
T Consensus 20 ~rP~p~~~IE~Am~e~~~~v~p-------~k----------sak~QalevIk~L~~~~~i------------pI~ra~m~ 70 (125)
T PF09377_consen 20 NRPYPPTRIEKAMKEAHFSVDP-------NK----------SAKQQALEVIKKLKEKQII------------PIKRAKMR 70 (125)
T ss_dssp TBTT-HHHHHHHHHHTTS-SST-------TS-----------HHHHHHHHHHHHTT--TS--------------EEEEEE
T ss_pred CCCCCHHHHHHHHHhCCcccCC-------CC----------CHHHHHHHHHHHHHHhCCC------------ceeeeeEE
Confidence 4455556676667777777541 11 246678888888876 33 46788899
Q ss_pred EEEecCcccHHHHHHHHHhcCcEEEE--ecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 431 IKVAVNTTARRDVLDIATIFRAKAVD--VSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 431 IKV~~~~~~R~eI~~la~iFrakIVD--vs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
++|.++......+......+.+.+.+ -+++++.+.+.=+++.-+.|.++++
T Consensus 71 l~v~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v~ 123 (125)
T PF09377_consen 71 LRVTIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELVN 123 (125)
T ss_dssp EEEEEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHHc
Confidence 99999999888898888888777643 4788888888877777777777664
No 451
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=31.36 E-value=1.7e+02 Score=26.35 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEec---CccccccccccccccchhhHHHHHHhcCCEEEEecC
Q 047033 149 TDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNA---DPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE 225 (514)
Q Consensus 149 de~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~~---~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~ 225 (514)
++..+.+|-.||+. ||| |||+. ..+.|.|+ ...|++.-+|..|++-.
T Consensus 29 te~vi~Ei~~aL~~-----------------reL--IKVkvl~~~~edr~ei-----------a~~l~~~~~a~lVqviG 78 (97)
T COG1534 29 TEGVIKEIDRALEA-----------------REL--IKVKVLQNAREDKKEI-----------AEALAEETGAELVQVIG 78 (97)
T ss_pred CHHHHHHHHHHHHh-----------------CCc--EEEEeeccchhhHHHH-----------HHHHHHHhCCEEeeeee
Confidence 56666666666643 454 44443 23566676 37899999999999999
Q ss_pred CEEEEEEeCC
Q 047033 226 YSLTIEVTGD 235 (514)
Q Consensus 226 ~s~~iEvTG~ 235 (514)
..+++--.|.
T Consensus 79 ~~~vlyr~~~ 88 (97)
T COG1534 79 KTLVLYRESK 88 (97)
T ss_pred eEEEEEecCc
Confidence 9998877443
No 452
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=30.80 E-value=1.5e+02 Score=24.70 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=37.7
Q ss_pred EEEEEeC---chhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHh
Q 047033 103 ISVFVGD---ESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQ 161 (514)
Q Consensus 103 IsvlVeN---~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLe 161 (514)
+.|.|.| .+|.=.+++..+..+||.+.+..-.+..+ ..-+|... ++....++|-++|.
T Consensus 4 v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~-~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 4 VRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNAPSSD-ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred eEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCCCCCC-CCEEEEECCCCHHHHHHHHHHCC
Confidence 5556665 57889999999999999995543332222 23444443 45666777777764
No 453
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=30.50 E-value=1.3e+02 Score=25.28 Aligned_cols=54 Identities=19% Similarity=0.492 Sum_probs=35.4
Q ss_pred EEEEEEeCchhHHHH----HHHHHhccCce-eeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHH
Q 047033 102 TISVFVGDESGMINR----IAGVFARRGYN-IESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQL 160 (514)
Q Consensus 102 ~IsvlVeN~pGVLsR----IaglFsRRgyN-IeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQL 160 (514)
...|.|..+|||+.- |..-+...||+ ++++.+| ..+++.++++. +.++.+.++|
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~-----k~~~l~~~~~~~~~a~~~v~~i~~~l 65 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTG-----KVIELTIEADSEEAVEREVEEMCEKL 65 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEE-----EEEEEEEcCCChhhHHHHHHHHHHHh
Confidence 346778899999865 44555557887 7776544 24777777644 4456665555
No 454
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=30.46 E-value=2.9e+02 Score=25.90 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=69.1
Q ss_pred hHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe--CChHHHHHHHHHHhcCccEEEEEe--cC---Cchhhheee
Q 047033 356 GVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP--ATDESISKLMQQLYKLIDLHEVRD--LT---HLPFAEREL 428 (514)
Q Consensus 356 GVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~--gde~~ieQI~kQL~KLidVikV~d--lt---~~~~V~REL 428 (514)
-+-+.+..+....||.+..+.+.......+-|+.|=-+ -+-+..+.+.+++...+|+..... ++ ..|-++|.|
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~RpL 87 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLDRPL 87 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCCCcC
Confidence 45667788899999999999998876666644444321 245678889999988888543210 00 023334433
Q ss_pred E-----------EEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecC
Q 047033 429 M-----------LIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGD 469 (514)
Q Consensus 429 ~-----------LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~ 469 (514)
- .|||..... ..=-+.|.|++.++.++.++++.-|.
T Consensus 88 ~~~~~f~r~~G~~v~V~~~~~-----~~~~~~~~G~L~~~~~~~i~l~~~~~ 134 (154)
T PRK00092 88 KKARDFRRFIGREVKVKLYEP-----IDGRKKFQGILLAVDGETVTLEVEGK 134 (154)
T ss_pred CCHHHHHHhCCCeEEEEEEcc-----cCCceEEEEEEEEeeCCEEEEEECCC
Confidence 2 244443211 01124677899999999999998765
No 455
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=30.38 E-value=38 Score=30.96 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=28.3
Q ss_pred hcCcEEEEecCCE-EEEEEecCHHHHHHHHHHhcc
Q 047033 449 IFRAKAVDVSDHT-ITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 449 iFrakIVDvs~~s-i~iE~TG~~~KIdafi~lL~p 482 (514)
+++++|.+.+.+- +++|+..+++||+.|++.+++
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4456677777765 999999999999999999875
No 456
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=30.27 E-value=3e+02 Score=31.54 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred eEEeeecCCCcEEEEEEecChHHHHHHHHHHhcC-cceeeEeecCChhhHHhh--------eeeEEEecCcccccccccc
Q 047033 130 SLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKL-VNVLKVEDLSNEPQVERE--------LMLIKVNADPKFRAEIFLF 200 (514)
Q Consensus 130 SLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKL-vdVikV~dlt~~~~V~RE--------L~LiKV~~~~~~r~EI~~~ 200 (514)
||.+..+++.+-+.+...| +-.++-++.+|.+- ++|. ++.-..++|| ++-+.|.++.++-..|
T Consensus 340 sl~v~~~~~~~~~~v~g~G-elHL~il~e~lrreg~e~~----~~~P~V~yrei~g~llEPi~~~~i~vp~e~~G~v--- 411 (594)
T TIGR01394 340 ALRVEDTESADKFEVSGRG-ELHLSILIETMRREGFELQ----VGRPQVIYKEIDGKKLEPIEELTIDVPEEHVGAV--- 411 (594)
T ss_pred eEEEEEecCCCeEEEEEEC-HHHHHHHHHHHhccCceEE----EeCCEEEEEeCCCeEECCEEEEEEEechHHHHHH---
Q ss_pred ccccchhhHHHHHHhcCCEEEEecC---CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecccccCCCcccccc
Q 047033 201 PCLGVHLQIRWLVDIFRAKIVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRREKLGASAPFWRFS 277 (514)
Q Consensus 201 ~~~~~~~~i~~l~~~F~akVVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~R~~~~~~~~~~~~~ 277 (514)
+.....-||+++++.. +...++..-....+..|-..|+. ++||.-.++..|.+|.
T Consensus 412 ---------~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s-------------~T~G~g~~~~~f~~Y~ 469 (594)
T TIGR01394 412 ---------IEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLT-------------DTRGTGIMNHVFDEYE 469 (594)
T ss_pred ---------HHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHh-------------hcCCeEEEEEEeccce
Q ss_pred ccCCCCCCCCCccccccccccccccCCCCC-----------CCCceE
Q 047033 278 AASYPDLNETPTIDGLVGAGHRPLLSETDT-----------VEGDVY 313 (514)
Q Consensus 278 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~gdvy 313 (514)
... +++.. .....+++..........-. ++-+||
T Consensus 470 ~~~-~~i~~-~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy 514 (594)
T TIGR01394 470 PWK-GEIET-RRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVY 514 (594)
T ss_pred eCC-CcCCC-CCceeEEECCCCcChHhhhhchhhcccEEeCCCCcee
No 457
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=30.27 E-value=3.6e+02 Score=24.13 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=61.6
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccC--ceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRG--YNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRG--yNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
.+++.+.-.++|+.-..|..+..|.+ .-..-+++-++...++-..+|.+. .+-++++-|-+.|.|..-|.-|
T Consensus 15 ~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~VkmV 89 (90)
T COG2921 15 TFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVKMV 89 (90)
T ss_pred cceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceEEe
Confidence 48999999999999999999999874 566677779999989988888887 4677899999999998877654
No 458
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=29.80 E-value=1.6e+02 Score=24.06 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=45.4
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC--CEEEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD--HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~--~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|+..+..-||+|++... +...|+......++-.|-..|+.+
T Consensus 3 i~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~ 60 (78)
T cd04097 3 IMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSM 60 (78)
T ss_pred EEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhh
Confidence 45677888888888999999999999999864 457788888888888888888753
No 459
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=29.74 E-value=1.2e+02 Score=24.72 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=45.7
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecCC--E--EEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSDH--T--ITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~--s--i~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|+..+..-||+|++.... + ..+.......++..|...|+.+
T Consensus 3 i~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~ 62 (80)
T cd04096 3 IYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSA 62 (80)
T ss_pred EEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhh
Confidence 467888888888889999999999999977642 3 7788888888888888888764
No 460
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.69 E-value=32 Score=35.70 Aligned_cols=65 Identities=28% Similarity=0.437 Sum_probs=45.5
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
+-+..+ |.=|+.|+..|..+||+|.+...+.-.. +.|.+-+++ .+.+.+|+.-|+.+.||..|.+
T Consensus 207 fkiv~e--~ssl~qV~~~Lr~~G~~i~d~~le~~P~---~~vev~~~~-lEk~qkL~q~L~e~edV~~iy~ 271 (276)
T KOG2972|consen 207 FKIVTE--PSSLNQVAHKLRSKGFEIKDSGLEFIPL---EEVEVDVPA-LEKIQKLIQALYENEDVMFIYD 271 (276)
T ss_pred eEEEec--cchHHHHHHHhhcCCceeeccccccccC---CccccCccc-hHHHHHHHHHHhhchhHHHHhh
Confidence 444444 5569999999999999999766554322 234444443 6677888888888888877643
No 461
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=29.54 E-value=1.6e+02 Score=24.40 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=44.4
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEec--CCE--EEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVS--DHT--ITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs--~~s--i~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|+...+.-||+|.+.. +++ .+|+..=.-.++..|-..|+.+
T Consensus 3 i~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 3 IYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred EEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 5678888888888899999999999999543 345 6777777788888888877754
No 462
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=29.37 E-value=1.6e+02 Score=24.39 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC--CEEEEEEecCHHHHHHHHHHhccC
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD--HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~--~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+.|.++.+.-..|++.+..-||+|.+..+ +...++.......+..|-..|+.+
T Consensus 5 i~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~ 62 (85)
T smart00838 5 IMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSA 62 (85)
T ss_pred EEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHh
Confidence 45677888888888999999999999999875 457788888888888888888753
No 463
>PRK00341 hypothetical protein; Provisional
Probab=28.99 E-value=3.2e+02 Score=23.81 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=50.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceee--eEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCccee
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIE--SLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIe--SLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVi 167 (514)
.+.+.|.-.+.++....|..++.+.. ..+ ++++-++....+ +|+.+. .+++.++.+=+.|.+.-.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48899999999999999999997654 653 445545544333 566655 45778999999999888774
No 464
>PRK08841 aspartate kinase; Validated
Probab=28.69 E-value=1.3e+02 Score=32.45 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=41.9
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCc
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLV 164 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLv 164 (514)
.+++.=++.||+..|+...+++.|+||.+++.+ + -.++++++. +..++.++.|.+-.
T Consensus 320 ~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s--~--~~is~vv~~--~~~~~av~~lH~~f 376 (392)
T PRK08841 320 LLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE--P--QSSMLVLDP--ANVDRAANILHKTY 376 (392)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCCEEEEECC--C--cEEEEEEeH--HHHHHHHHHHHHHH
Confidence 566666688999999999999999999877742 2 237777765 44566666666644
No 465
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=27.34 E-value=1.3e+02 Score=25.25 Aligned_cols=55 Identities=11% Similarity=0.200 Sum_probs=45.8
Q ss_pred eEEEEEecCcccHHHHHHHHHhcCcEEEEecC---CEEEEEEecCHHHHHHHHHHhcc
Q 047033 428 LMLIKVAVNTTARRDVLDIATIFRAKAVDVSD---HTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 428 L~LIKV~~~~~~R~eI~~la~iFrakIVDvs~---~si~iE~TG~~~KIdafi~lL~p 482 (514)
++.+.|.++.+.-..|+......||++.++.. +...|+....-.++..|...|+.
T Consensus 6 ~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~ 63 (89)
T PF00679_consen 6 IMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRS 63 (89)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHH
T ss_pred EEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhc
Confidence 45677788878889999999999999999854 68999999999999888888875
No 466
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=27.24 E-value=2.3e+02 Score=25.28 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=27.1
Q ss_pred heeeEEEEEec-CcccHHH-HHHHHHhcCcEEEEecCCEEEE
Q 047033 425 ERELMLIKVAV-NTTARRD-VLDIATIFRAKAVDVSDHTITL 464 (514)
Q Consensus 425 ~REL~LIKV~~-~~~~R~e-I~~la~iFrakIVDvs~~si~i 464 (514)
.|||.=|||.- ..+.|.+ +.+||+.-+|.+|.+=.+++++
T Consensus 43 ~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~~~vl 84 (97)
T PRK10343 43 HHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVL 84 (97)
T ss_pred HCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeeeCcEEEE
Confidence 46655444432 2234544 4669999999999998888776
No 467
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=26.74 E-value=2e+02 Score=26.21 Aligned_cols=75 Identities=17% Similarity=0.282 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHhc--CcceeeEeecCChhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEE--Eec
Q 047033 149 TDKVLQQVMEQLQK--LVNVLKVEDLSNEPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIV--DIS 224 (514)
Q Consensus 149 de~~ieQI~kQLeK--LvdVikV~dlt~~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVV--Dvs 224 (514)
.+.....++|+|.+ .++ ++|.-|-++|.++.+...++ ......+.+.+. +.+
T Consensus 45 ak~QalevIk~L~~~~~ip------------I~ra~m~l~v~ip~~~~~~~------------~~~l~~~~~~i~~~~~~ 100 (125)
T PF09377_consen 45 AKQQALEVIKKLKEKQIIP------------IKRAKMRLRVTIPSKYAKKV------------KDKLLKLGAKIEEEEQN 100 (125)
T ss_dssp HHHHHHHHHHHHTT--TS--------------EEEEEEEEEEEBCCCHHHH------------HHHHHHHSEEEEEEEET
T ss_pred HHHHHHHHHHHHHHhCCCc------------eeeeeEEEEEEeCHHHHHHH------------HHHHHHhhcEeeecccC
Confidence 45667778888877 443 56778899999988777777 667777777664 357
Q ss_pred CCEEEEEEeCChhHHHHHHHHhc
Q 047033 225 EYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 225 ~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
++++.+.+.=+|+.-+.|.+.++
T Consensus 101 ~~~~~~~~~i~pg~~r~l~~~v~ 123 (125)
T PF09377_consen 101 DGSWEMVFLIDPGLYRELDELVN 123 (125)
T ss_dssp TSCEEEEEEEEGGGHHHHHHHHH
T ss_pred CCeEEEEEEECCcchHHHHHHHc
Confidence 88888888888888888888765
No 468
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=26.68 E-value=2.9e+02 Score=23.26 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=50.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccC--ceeeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRG--YNIESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRg--yNIeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
..+.+.+...|.++....|..+|.+.. ++-..+...++....+ +|+.+. .+++.++.+-+.|.+.-.|.=|
T Consensus 9 ~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vkmv 84 (85)
T PF04359_consen 9 CDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVKMV 84 (85)
T ss_dssp CEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEEEE
T ss_pred CcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEEEe
Confidence 569999999999999999999999964 2334444554444444 555554 5678899999999887777543
No 469
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=26.48 E-value=1.5e+02 Score=22.90 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=30.0
Q ss_pred hHHHHHHhcCCEEEEecCC---EEEEEEeCChhHHHHHHHHh
Q 047033 208 QIRWLVDIFRAKIVDISEY---SLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 208 ~i~~l~~~F~akVVDvs~~---s~~iEvTG~~~kIdafi~~L 246 (514)
.|.+|.+.++++| ++.+. .-.|.++|+++.+....+.+
T Consensus 21 ~i~~i~~~~g~~I-~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 21 NIRKIMEETGVKI-RFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred cHHHHHHHhCCEE-EcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 5788999999994 55552 56689999999998877765
No 470
>PRK14636 hypothetical protein; Provisional
Probab=26.06 E-value=4.4e+02 Score=25.71 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC------hHHHHHHHHHHhcCcceeeEee--cC---ChhhHH
Q 047033 111 SGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT------DKVLQQVMEQLQKLVNVLKVED--LS---NEPQVE 179 (514)
Q Consensus 111 pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd------e~~ieQI~kQLeKLvdVikV~d--lt---~~~~V~ 179 (514)
+-+-..+..+....||-+..+.+-.......++|.++.+ -+..+++-++|..++|+..... |+ .+|-++
T Consensus 5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSPGld 84 (176)
T PRK14636 5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPIEDAYRLEVSSPGID 84 (176)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCC
Confidence 345667888899999999999986655555688888633 2678899999999999643211 00 122223
Q ss_pred hhe-----------eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEe
Q 047033 180 REL-----------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVT 233 (514)
Q Consensus 180 REL-----------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvT 233 (514)
|.| =++||.+... ..=-+.|.|+++++.++.+++++.
T Consensus 85 RpL~~~~df~r~~G~~V~V~l~~~-----------------~~g~k~~~G~L~~v~~~~v~l~~~ 132 (176)
T PRK14636 85 RPLTRPKDFADWAGHEARIALSEP-----------------LDGRKQFRGELKGIDGDTVTIADN 132 (176)
T ss_pred CCCCCHHHHHHhCCCeEEEEEecc-----------------cCCeEEEEEEEEEEeCCEEEEEEc
Confidence 322 1233333110 011146779999999999999873
No 471
>PRK01002 nickel responsive regulator; Provisional
Probab=25.74 E-value=5.5e+02 Score=24.03 Aligned_cols=68 Identities=31% Similarity=0.454 Sum_probs=0.0
Q ss_pred EEEEEEeCch--hHHHHHHHHHhcc-CceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEe
Q 047033 102 TISVFVGDES--GMINRIAGVFARR-GYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 102 ~IsvlVeN~p--GVLsRIaglFsRR-gyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~ 170 (514)
+|++ |.|+- ++-.+++.+.... +.=+-++.+--.++.....+++.|+-+.+..+.++|..+=-|..+.
T Consensus 59 vIti-vydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhld~~~ClEvivv~G~~~~I~~l~~kL~~lkGV~~~k 129 (141)
T PRK01002 59 TISV-IYDHHSTGVMEKLTDIQHDYSDLIVASLHIHLDHDHCLEVIVVRGDAKEIRELTEKLMALKGVKHVK 129 (141)
T ss_pred EEEE-EEeccchhHHHHHHHHHHhccCeEEEeeeeecCCCcEEEEEEEEcCHHHHHHHHHHHhCcCCeeEEE
No 472
>PRK14638 hypothetical protein; Provisional
Probab=25.32 E-value=4.2e+02 Score=25.09 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChH-----HHHHHHHHHhcCcceeeEeecCC-----hhhHHhhe
Q 047033 113 MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDK-----VLQQVMEQLQKLVNVLKVEDLSN-----EPQVEREL 182 (514)
Q Consensus 113 VLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~-----~ieQI~kQLeKLvdVikV~dlt~-----~~~V~REL 182 (514)
+-..+.-+....||-+..+.+........++|.++.++. ..+.+-++|.++.|+.....-.. +|-++|.|
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRpL 89 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDRPL 89 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCCCC
Q ss_pred -----------eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCCh
Q 047033 183 -----------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDP 236 (514)
Q Consensus 183 -----------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~ 236 (514)
=.+||++.. . +.|.|++.++.++.++++.-|..
T Consensus 90 ~~~~~f~r~~G~~v~V~~~~------------------~---k~~~G~L~~~~~~~i~l~~~~~~ 133 (150)
T PRK14638 90 RGPKDYVRFTGKLAKIVTKD------------------G---KTFIGRIESFVDGTITISDEKEK 133 (150)
T ss_pred CCHHHHHHhCCCEEEEEECC------------------C---cEEEEEEEEEeCCEEEEEECCcE
No 473
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=25.14 E-value=3.6e+02 Score=27.50 Aligned_cols=80 Identities=24% Similarity=0.215 Sum_probs=48.0
Q ss_pred EEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEec-----------
Q 047033 390 TVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVS----------- 458 (514)
Q Consensus 390 IVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs----------- 458 (514)
+.|.|. ..+-++.-|+-|.... +|.-.+..+. ..+=+++++.++|..++..
T Consensus 176 vlI~G~-G~vG~~a~q~ak~~G~-~vi~~~~~~~----------------~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~ 237 (355)
T cd08230 176 ALVLGA-GPIGLLAALLLRLRGF-EVYVLNRRDP----------------PDPKADIVEELGATYVNSSKTPVAEVKLVG 237 (355)
T ss_pred EEEECC-CHHHHHHHHHHHHcCC-eEEEEecCCC----------------CHHHHHHHHHcCCEEecCCccchhhhhhcC
Confidence 455575 6888888888887765 3444332100 0011222333333333221
Q ss_pred CCEEEEEEecCHHHHHHHHHHhccCCcEE
Q 047033 459 DHTITLELTGDLDKMVALQRLLEPYGICE 487 (514)
Q Consensus 459 ~~si~iE~TG~~~KIdafi~lL~pyGIlE 487 (514)
.=-++++.+|.+.-++..++.|++.|.+-
T Consensus 238 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 238 EFDLIIEATGVPPLAFEALPALAPNGVVI 266 (355)
T ss_pred CCCEEEECcCCHHHHHHHHHHccCCcEEE
Confidence 12489999999888999999999999543
No 474
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=24.96 E-value=54 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHhcCCEEEEecCCEEEEEEeCCh
Q 047033 210 RWLVDIFRAKIVDISEYSLTIEVTGDP 236 (514)
Q Consensus 210 ~~l~~~F~akVVDvs~~s~~iEvTG~~ 236 (514)
......++|+..|+.+|.+++|..|++
T Consensus 27 ~T~~g~v~G~L~~V~pDhIvl~~~~~~ 53 (66)
T PF10842_consen 27 QTTRGSVRGILVDVKPDHIVLEENGTP 53 (66)
T ss_pred EEcCCcEEEEEEeecCCEEEEEeCCcE
Confidence 334456789999999999999998764
No 475
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=24.78 E-value=57 Score=29.87 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.7
Q ss_pred hcCCEEEEecCCE-EEEEEeCChhHHHHHHHHhcc
Q 047033 215 IFRAKIVDISEYS-LTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 215 ~F~akVVDvs~~s-~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++++|.+.+.+- +++|+...++||..|++.+++
T Consensus 55 ~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e 89 (109)
T COG1993 55 IHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDE 89 (109)
T ss_pred ccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 3455666667665 999999999999999999874
No 476
>PRK14631 hypothetical protein; Provisional
Probab=24.69 E-value=6.2e+02 Score=24.67 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe----------------------cChHHHHHHHHHHhcCcceeeEe
Q 047033 113 MINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY----------------------GTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 113 VLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~----------------------gde~~ieQI~kQLeKLvdVikV~ 170 (514)
+-..+.-+....||-+..+.+-......++.|.++ -+-+..+.+-++|..++|+....
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~d~i 89 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVHDPI 89 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcccccC
Q ss_pred ecCC-----hhhHHhhe-----------eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEec--CCEEEEEE
Q 047033 171 DLSN-----EPQVEREL-----------MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDIS--EYSLTIEV 232 (514)
Q Consensus 171 dlt~-----~~~V~REL-----------~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs--~~s~~iEv 232 (514)
.-.. +|-++|.| -.+||++....-..- .|.|++.++. ++.+++++
T Consensus 90 ~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~~~k-----------------~~~G~L~~v~~~~~~v~l~~ 152 (174)
T PRK14631 90 SGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLIAAVENRR-----------------KFQAKLLAVDLENEEIQVEV 152 (174)
T ss_pred CCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEecccCCce-----------------EEEEEEEEeecCCCEEEEEE
Q ss_pred eCCh
Q 047033 233 TGDP 236 (514)
Q Consensus 233 TG~~ 236 (514)
.|..
T Consensus 153 ~~~~ 156 (174)
T PRK14631 153 EGKH 156 (174)
T ss_pred cCCc
No 477
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=23.66 E-value=2.8e+02 Score=21.91 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=30.9
Q ss_pred chhhHHHHHHhcCCEEEEecCC------EEEEEEeCChhHHHHHHHHh
Q 047033 205 VHLQIRWLVDIFRAKIVDISEY------SLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 205 ~~~~i~~l~~~F~akVVDvs~~------s~~iEvTG~~~kIdafi~~L 246 (514)
....|.+|-+..+|+|- +.++ .-+++++|+++.+..-++++
T Consensus 18 ~G~~i~~i~~~tga~I~-i~~~~~~~~~~r~v~I~G~~~~v~~A~~~I 64 (65)
T cd02396 18 GGSTIKEIREETGAKIR-VSKSVLPGSTERVVTISGKPSAVQKALLLI 64 (65)
T ss_pred CcHHHHHHHHHHCCEEE-EcCCCCCCCCceEEEEEeCHHHHHHHHHhh
Confidence 33467889999999854 4333 36899999999998887764
No 478
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=23.44 E-value=1.4e+02 Score=30.14 Aligned_cols=60 Identities=23% Similarity=0.392 Sum_probs=40.8
Q ss_pred cchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 354 SPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 354 ~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
.|.-|..|...+...||.|++-.+.-..... +.+ -+.+-+.+.+++..|+.+.||.+|.+
T Consensus 172 ~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~---v~l-~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 172 DPSDLSAVKKALEKKGYEIESAELEYIPNNP---VEL-SEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EGGGHHHHHHHHHHTT---SEEEEEEEESS----EE---HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEEEeCCCC---ccc-CHHHHHHHHHHHHHHhCCcCcceeee
Confidence 5888999999999999999987665433221 222 12234468889999999999999975
No 479
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=23.31 E-value=53 Score=36.35 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-hHHHHHHHHHHhcCcceeeEeecCChhhHH
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-DKVLQQVMEQLQKLVNVLKVEDLSNEPQVE 179 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-e~~ieQI~kQLeKLvdVikV~dlt~~~~V~ 179 (514)
+++.+.++||-.+++..+...+++++.++---......++|-.+.-+ +....+..+||+... .++.|+++.+.+.
T Consensus 376 l~v~l~d~pG~~~~l~~~i~~~~~se~~~~~~~~~~~~v~t~~v~~~~e~~~~~~~~ql~~~~--~~~~d~s~~~~~~ 451 (457)
T KOG1250|consen 376 LLVALPDRPGGFNKLTELIGPLSVSEKDIRHERAWMRNVYTSFVKVVRETEGKEHEQQLKQKL--KKAYDISDNELVK 451 (457)
T ss_pred eeeecccCCCcchhhHHhhcccccchhhhhhhHHHhhhheEEEEEEEEecccHHHHHHHHHhh--hheecchhhhhhh
No 480
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=23.23 E-value=1.2e+02 Score=30.85 Aligned_cols=100 Identities=20% Similarity=0.191 Sum_probs=67.2
Q ss_pred eEEEEEEeC-ChHHHHHHHHHHhcCc-cEEEEEec------CCchhhheeeEEEEEec--CcccHHHHHHHHHh-cCcEE
Q 047033 386 SRITTVVPA-TDESISKLMQQLYKLI-DLHEVRDL------THLPFAERELMLIKVAV--NTTARRDVLDIATI-FRAKA 454 (514)
Q Consensus 386 SRiTIVV~g-de~~ieQI~kQL~KLi-dVikV~dl------t~~~~V~REL~LIKV~~--~~~~R~eI~~la~i-FrakI 454 (514)
.=++..+.| .++.++++.+.|..|- |.+-.=++ +..+.+.+|+.|.-+.- ..+++.-+.++++. |++.|
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~I 140 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAII 140 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEE
Confidence 335555666 4558999988888875 33322222 23467888998765532 23456667789998 99999
Q ss_pred EEecCCEEEEEEecC---HHHHHHHHHHhccCCc
Q 047033 455 VDVSDHTITLELTGD---LDKMVALQRLLEPYGI 485 (514)
Q Consensus 455 VDvs~~si~iE~TG~---~~KIdafi~lL~pyGI 485 (514)
|.|+..-+-=+.-|. .+-++.+..+=+.|||
T Consensus 141 v~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi 174 (223)
T COG2102 141 VAVSAEGLDESWLGRRIDREFLEELKSLNRRYGI 174 (223)
T ss_pred EEEeccCCChHHhCCccCHHHHHHHHHHHHhcCC
Confidence 999988777555554 3556777777677776
No 481
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=22.74 E-value=1.9e+02 Score=31.91 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhccC--ceeeeEEeeecC-CCcEEEEEEe-cChHHHHHHHHHHhcCc
Q 047033 111 SGMINRIAGVFARRG--YNIESLAVGLNK-DKALFTIVVY-GTDKVLQQVMEQLQKLV 164 (514)
Q Consensus 111 pGVLsRIaglFsRRg--yNIeSLtVg~Te-d~~~~TIVv~-gde~~ieQI~kQLeKLv 164 (514)
.|+|+|+....-.-| |.|+.+.+|.+. |++.-.+.|. .+++.+++|..||.++=
T Consensus 15 s~il~~~lD~i~d~gG~f~v~~f~vG~~k~d~S~a~~~V~a~~~~~l~~Il~~l~~~G 72 (407)
T TIGR00300 15 SLILPKALDIILDMGGDFRVLEFNIGKRKNDPSYARILVSARDHQHLEEILTELIDLG 72 (407)
T ss_pred hhhHHHHHHHHHhcCCceEEEEEecCCccCCCccEEEEEecCCHHHHHHHHHHHHHcC
Confidence 588999988887766 999999999865 5666666666 46788999999998763
No 482
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=22.49 E-value=2.4e+02 Score=30.58 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=34.6
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeec
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN 136 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~T 136 (514)
..+--|-.+-+..||+|..|..+|+-|.+|+.+|..-|.
T Consensus 279 l~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~ 317 (377)
T KOG2797|consen 279 LFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPF 317 (377)
T ss_pred cceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccc
Confidence 456667777999999999999999999999999999883
No 483
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.45 E-value=2e+02 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCcEEEEecCC---EEEEEEecCHHHHHHHHHHh
Q 047033 441 RDVLDIATIFRAKAVDVSDH---TITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~---si~iE~TG~~~KIdafi~lL 480 (514)
..|.+|.+.++++ |++.+. .=.+.++|+++.+....+++
T Consensus 20 ~~i~~i~~~~g~~-I~i~~~~~~~~~v~I~G~~~~v~~A~~~i 61 (62)
T cd02394 20 SNIRKIMEETGVK-IRFPDPGSKSDTITITGPKENVEKAKEEI 61 (62)
T ss_pred CcHHHHHHHhCCE-EEcCCCCCCCCEEEEEcCHHHHHHHHHHh
Confidence 3567788888888 566552 45679999999998887765
No 484
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.44 E-value=7e+02 Score=24.96 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=58.0
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee---ecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG---HAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg---~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV 415 (514)
..+.+++.|+|--....+|..+-.+.|-.|++-... .........||+-|+ .+.++....+|.++=.|..-
T Consensus 50 ~~~~l~lev~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP--~~~~~~~l~~l~~~g~v~~~ 123 (262)
T PF14257_consen 50 KTADLSLEVKDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVP--ADKFDSFLDELSELGKVTSR 123 (262)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEEC--HHHHHHHHHHHhccCceeee
Confidence 467999999999999999999999999889998886 334455556666666 57899999999998776543
No 485
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=22.42 E-value=1.8e+02 Score=23.57 Aligned_cols=55 Identities=11% Similarity=0.174 Sum_probs=40.2
Q ss_pred eeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecC---CEEEEEEeCChhHHHHHHHHhcc
Q 047033 182 LMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE---YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 182 L~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~---~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
++.+.|.++.++-..| +.....-||+|++... +...++....-.++-.|-..|+.
T Consensus 3 i~~~~I~~p~~~~g~v------------~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~ 60 (79)
T cd01514 3 IMKVEITVPEEYLGAV------------IGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRS 60 (79)
T ss_pred EEEEEEEcCHHHHHHH------------HHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhh
Confidence 3456666666555566 8888999999999877 45777777777777777777664
No 486
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.74 E-value=1.5e+02 Score=31.96 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=36.4
Q ss_pred cccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC
Q 047033 339 TSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE 383 (514)
Q Consensus 339 ~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~ 383 (514)
+.+..+--|-..-+.-||+|-.|..+|+-|.+|+.+|.+-|-...
T Consensus 276 t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~ 320 (377)
T KOG2797|consen 276 TDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNR 320 (377)
T ss_pred CCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCC
Confidence 344445555566899999999999999999999999999885543
No 487
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=21.72 E-value=2.5e+02 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHHhcCCEEEEecCCEEEE
Q 047033 209 IRWLVDIFRAKIVDISEYSLTI 230 (514)
Q Consensus 209 i~~l~~~F~akVVDvs~~s~~i 230 (514)
+.+|++..+|.+|++=...+++
T Consensus 61 a~~i~~~~~a~~Vq~iG~~~vl 82 (95)
T TIGR00253 61 AEALVKETGACNVQVIGKTIVL 82 (95)
T ss_pred HHHHHHHHCCEEEEEEccEEEE
Confidence 4789999999999998777765
No 488
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=21.42 E-value=84 Score=27.60 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.5
Q ss_pred EecCHHHHHHHHHHhccCCc-EEEeecceeEeec
Q 047033 466 LTGDLDKMVALQRLLEPYGI-CEVARTGRVALVR 498 (514)
Q Consensus 466 ~TG~~~KIdafi~lL~pyGI-lEvaRTG~vAl~R 498 (514)
..|..+=.++|.+.++..|+ +++.+||..++--
T Consensus 13 AaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~ 46 (92)
T cd03063 13 ALGADEVAEAIEAEAAARGLAATIVRNGSRGMYW 46 (92)
T ss_pred hhCHHHHHHHHHHHHHHcCCeEEEEEecCceecC
Confidence 35778889999999999998 8999999998753
No 489
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=21.32 E-value=1.6e+02 Score=23.81 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=40.4
Q ss_pred eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 047033 183 MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE--YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 183 ~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~--~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
+.+.|.++.++-..| +.....-||+|++... +...|.....-.++..|-..|+.
T Consensus 4 ~~~~I~~p~~~~g~v------------~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~ 59 (78)
T cd03713 4 MKVEVTVPEEYMGDV------------IGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRS 59 (78)
T ss_pred EEEEEEcCHHHHHHH------------HHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHh
Confidence 455666666666666 8888999999998876 45777777788888888777765
No 490
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=20.95 E-value=4.5e+02 Score=26.73 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=49.1
Q ss_pred EEEEeCChHHHHHHHHHHhcCccEEEEE--ecCCc-hhhheeeEEEEE-ecCcccHHHHHHHHHhcCcEEEEecCCEEEE
Q 047033 389 TTVVPATDESISKLMQQLYKLIDLHEVR--DLTHL-PFAERELMLIKV-AVNTTARRDVLDIATIFRAKAVDVSDHTITL 464 (514)
Q Consensus 389 TIVV~gde~~ieQI~kQL~KLidVikV~--dlt~~-~~V~REL~LIKV-~~~~~~R~eI~~la~iFrakIVDvs~~si~i 464 (514)
++.|.|. ..+-++.-|+-|.....+|. +.+++ -..-++|---.+ ....+ ++.++.+. . +.=-+++
T Consensus 172 ~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~---~~~~~~~~-~------g~~D~vi 240 (343)
T PRK09880 172 RVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQND---DLDHYKAE-K------GYFDVSF 240 (343)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcc---cHHHHhcc-C------CCCCEEE
Confidence 4555675 78999999999887654433 32222 112223321111 11111 11121111 1 1124889
Q ss_pred EEecCHHHHHHHHHHhccCCcE
Q 047033 465 ELTGDLDKMVALQRLLEPYGIC 486 (514)
Q Consensus 465 E~TG~~~KIdafi~lL~pyGIl 486 (514)
|.+|.+.-++..++.|++.|.+
T Consensus 241 d~~G~~~~~~~~~~~l~~~G~i 262 (343)
T PRK09880 241 EVSGHPSSINTCLEVTRAKGVM 262 (343)
T ss_pred ECCCCHHHHHHHHHHhhcCCEE
Confidence 9999998899999999999954
No 491
>PRK14645 hypothetical protein; Provisional
Probab=20.83 E-value=2.7e+02 Score=26.56 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=76.1
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-C---ChHHHHHHHHHHhcCccEEEEEecC-----Cc
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-A---TDESISKLMQQLYKLIDLHEVRDLT-----HL 421 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-g---de~~ieQI~kQL~KLidVikV~dlt-----~~ 421 (514)
.+|+.-+-..+..+....||-+..+.+.......+-|+.|--+ | +-+..+++.++|.+++|+.....-. ..
T Consensus 5 ~~~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSS 84 (154)
T PRK14645 5 TENNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRLDPIEGEYRLEVES 84 (154)
T ss_pred cccHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhcccccCCCceEEEEeC
Confidence 4677788899999999999999999998776666655555321 2 3457888999999999865321100 02
Q ss_pred hhhheee-----------EEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHH
Q 047033 422 PFAEREL-----------MLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKM 473 (514)
Q Consensus 422 ~~V~REL-----------~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KI 473 (514)
|-++|.| -.+||+. =-+.|.|++.++.++.++++.-|..-+|
T Consensus 85 PGldRpL~~~~df~r~~G~~v~v~~----------~~k~~~G~L~~~~d~~i~l~~~~~~~~i 137 (154)
T PRK14645 85 PGPKRPLFTARHFERFAGLKAKVRG----------PGENFTGRIKAVSGDQVTFDVGGEDRTL 137 (154)
T ss_pred CCCCCCCCCHHHHHHhCCCEEEEEc----------CCeEEEEEEEEEeCCEEEEEECCeEEEE
Confidence 3344443 1244432 1256789999999999999886655443
No 492
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=20.71 E-value=2e+02 Score=23.50 Aligned_cols=54 Identities=13% Similarity=-0.013 Sum_probs=40.6
Q ss_pred eeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecC--CEEEEEEeCChhHHHHHHHHhcc
Q 047033 183 MLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE--YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 183 ~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~--~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
+.+.|.++.++-..| ..+...-||+|++... +...|+....-.++..|-..|+.
T Consensus 4 ~~~~i~~p~~~~g~v------------~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~ 59 (78)
T cd03711 4 LRFELEVPQDALGRA------------MSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPS 59 (78)
T ss_pred EEEEEEcCHHHHHHH------------HHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHh
Confidence 455666666666666 8999999999998875 46777777777888777777764
No 493
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=20.65 E-value=2.4e+02 Score=31.46 Aligned_cols=72 Identities=14% Similarity=0.298 Sum_probs=56.4
Q ss_pred EEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCChhh
Q 047033 103 ISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSNEPQ 177 (514)
Q Consensus 103 IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~~~~ 177 (514)
|-|+.+|+-|+.-.+..++.-|++|.+-+-+ +..+++-+-.. =+-..++-++..|+.+--|-.|..+.--|.
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEi---d~~~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~mPs 75 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEI---DPIGRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWMPS 75 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceee---cCCCeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCCcc
Confidence 6789999999999999999999999998776 33466655544 356788899999998887777766655443
Done!