Query 047033
Match_columns 514
No_of_seqs 334 out of 2213
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgc_A Acetolactate synthase, 100.0 4.5E-55 1.5E-59 416.1 22.2 170 328-502 17-188 (193)
2 2pc6_A Probable acetolactate s 100.0 1.2E-52 4.1E-57 390.8 19.8 161 341-501 1-161 (165)
3 2f1f_A Acetolactate synthase i 100.0 1.1E-51 3.7E-56 383.8 21.2 160 342-501 1-161 (164)
4 2fgc_A Acetolactate synthase, 100.0 5.8E-50 2E-54 381.0 19.3 160 98-270 27-190 (193)
5 2pc6_A Probable acetolactate s 100.0 4E-49 1.4E-53 367.2 17.1 157 99-267 3-161 (165)
6 2f1f_A Acetolactate synthase i 100.0 2.3E-48 7.8E-53 361.5 18.2 158 98-267 1-161 (164)
7 2f06_A Conserved hypothetical 99.0 4.4E-09 1.5E-13 92.9 14.8 126 340-485 2-133 (144)
8 2f06_A Conserved hypothetical 98.9 5.6E-08 1.9E-12 85.8 15.1 125 97-251 3-133 (144)
9 2ko1_A CTR148A, GTP pyrophosph 98.9 2.5E-08 8.5E-13 79.9 11.5 77 344-422 5-82 (88)
10 2ko1_A CTR148A, GTP pyrophosph 98.7 7.7E-08 2.6E-12 77.1 10.5 76 99-174 4-80 (88)
11 1u8s_A Glycine cleavage system 98.7 1.6E-07 5.5E-12 86.8 13.5 119 99-226 5-127 (192)
12 1u8s_A Glycine cleavage system 98.7 2.5E-07 8.5E-12 85.5 13.4 113 344-459 6-126 (192)
13 1zpv_A ACT domain protein; str 98.6 1.3E-07 4.5E-12 76.8 7.5 68 343-412 4-72 (91)
14 1zpv_A ACT domain protein; str 98.5 2.2E-07 7.4E-12 75.5 6.0 70 99-168 4-74 (91)
15 1y7p_A Hypothetical protein AF 98.0 2.1E-05 7.3E-10 76.6 10.2 83 343-427 3-88 (223)
16 1y7p_A Hypothetical protein AF 97.7 9.9E-05 3.4E-09 71.9 9.5 143 99-252 3-173 (223)
17 2jhe_A Transcription regulator 97.2 0.0045 1.5E-07 54.2 12.5 103 346-466 2-105 (190)
18 3mtj_A Homoserine dehydrogenas 97.0 0.0012 4.2E-08 69.6 8.6 71 343-413 358-430 (444)
19 1sc6_A PGDH, D-3-phosphoglycer 97.0 0.0025 8.7E-08 66.2 10.4 73 100-172 331-403 (404)
20 1sc6_A PGDH, D-3-phosphoglycer 97.0 0.0041 1.4E-07 64.6 11.6 73 344-418 331-403 (404)
21 2nyi_A Unknown protein; protei 96.9 0.0072 2.5E-07 56.2 11.5 117 99-226 4-127 (195)
22 2jhe_A Transcription regulator 96.9 0.0067 2.3E-07 53.1 10.5 69 102-173 2-71 (190)
23 2nyi_A Unknown protein; protei 96.9 0.017 5.9E-07 53.7 13.8 115 343-460 4-127 (195)
24 3mtj_A Homoserine dehydrogenas 96.9 0.0024 8.3E-08 67.4 8.8 73 95-167 354-430 (444)
25 3l76_A Aspartokinase; alloster 96.6 0.17 5.7E-06 55.2 21.3 293 106-485 277-590 (600)
26 2re1_A Aspartokinase, alpha an 96.5 0.014 4.9E-07 52.9 10.0 115 345-467 26-149 (167)
27 3k5p_A D-3-phosphoglycerate de 96.5 0.013 4.4E-07 61.5 10.9 74 99-172 342-415 (416)
28 3o1l_A Formyltetrahydrofolate 96.5 0.0061 2.1E-07 61.5 8.2 67 97-163 19-89 (302)
29 3o1l_A Formyltetrahydrofolate 96.4 0.0063 2.1E-07 61.4 8.0 68 340-407 18-87 (302)
30 3lou_A Formyltetrahydrofolate 96.4 0.0068 2.3E-07 60.8 7.7 66 98-163 8-79 (292)
31 1ygy_A PGDH, D-3-phosphoglycer 96.3 0.0046 1.6E-07 66.0 6.8 72 99-172 453-526 (529)
32 3n0v_A Formyltetrahydrofolate 96.3 0.0071 2.4E-07 60.4 7.7 65 98-162 6-73 (286)
33 1ygy_A PGDH, D-3-phosphoglycer 96.3 0.0054 1.8E-07 65.5 7.1 73 344-418 454-526 (529)
34 3obi_A Formyltetrahydrofolate 96.3 0.0085 2.9E-07 59.9 7.9 65 99-163 5-73 (288)
35 3nrb_A Formyltetrahydrofolate 96.2 0.009 3.1E-07 59.7 7.7 64 99-162 6-71 (287)
36 3obi_A Formyltetrahydrofolate 96.2 0.009 3.1E-07 59.7 7.6 109 344-457 6-122 (288)
37 3lou_A Formyltetrahydrofolate 96.2 0.0095 3.2E-07 59.7 7.6 68 340-407 6-77 (292)
38 3n0v_A Formyltetrahydrofolate 96.1 0.013 4.3E-07 58.6 7.9 65 342-406 6-71 (286)
39 3p96_A Phosphoserine phosphata 95.9 0.061 2.1E-06 54.5 12.4 141 343-485 11-171 (415)
40 3nrb_A Formyltetrahydrofolate 95.9 0.017 5.7E-07 57.8 7.7 110 343-457 6-121 (287)
41 3k5p_A D-3-phosphoglycerate de 95.8 0.037 1.3E-06 58.1 10.2 73 344-418 343-415 (416)
42 2re1_A Aspartokinase, alpha an 95.7 0.023 8E-07 51.4 7.3 128 101-246 26-160 (167)
43 3p96_A Phosphoserine phosphata 95.6 0.077 2.6E-06 53.7 11.7 142 99-251 11-171 (415)
44 2qmx_A Prephenate dehydratase; 95.2 0.12 3.9E-06 51.8 11.2 73 343-415 199-274 (283)
45 2dtj_A Aspartokinase; protein- 94.8 0.23 7.8E-06 45.5 11.2 125 346-481 17-153 (178)
46 2qmx_A Prephenate dehydratase; 94.7 0.18 6E-06 50.5 10.9 72 98-169 198-274 (283)
47 2dt9_A Aspartokinase; protein- 94.3 0.18 6.2E-06 45.5 9.2 122 351-482 24-154 (167)
48 3s1t_A Aspartokinase; ACT doma 94.2 0.21 7.1E-06 46.3 9.5 124 350-480 23-153 (181)
49 3mwb_A Prephenate dehydratase; 94.1 0.15 5.1E-06 51.7 9.0 72 340-411 197-272 (313)
50 3mwb_A Prephenate dehydratase; 93.8 0.24 8.2E-06 50.2 9.9 73 97-169 198-276 (313)
51 2qmw_A PDT, prephenate dehydra 93.6 0.2 6.7E-06 49.8 8.5 70 99-169 185-262 (267)
52 2dt9_A Aspartokinase; protein- 93.3 0.65 2.2E-05 41.8 10.9 125 107-249 24-155 (167)
53 3mah_A Aspartokinase; aspartat 93.3 0.26 9E-06 44.1 8.1 110 352-480 29-145 (157)
54 2qmw_A PDT, prephenate dehydra 92.5 0.46 1.6E-05 47.2 9.3 72 344-415 186-262 (267)
55 3luy_A Probable chorismate mut 92.2 0.5 1.7E-05 48.2 9.4 71 345-415 207-282 (329)
56 1phz_A Protein (phenylalanine 91.8 0.35 1.2E-05 51.2 7.9 74 97-170 31-109 (429)
57 3mah_A Aspartokinase; aspartat 91.4 0.57 2E-05 41.8 7.9 50 108-162 29-78 (157)
58 2dtj_A Aspartokinase; protein- 91.4 0.58 2E-05 42.8 8.1 60 102-163 17-80 (178)
59 3luy_A Probable chorismate mut 91.3 0.7 2.4E-05 47.2 9.3 69 101-169 207-282 (329)
60 1phz_A Protein (phenylalanine 90.8 0.63 2.2E-05 49.2 8.6 76 341-416 31-109 (429)
61 3ab4_A Aspartokinase; aspartat 90.3 1.8 6.1E-05 44.8 11.4 126 346-480 266-401 (421)
62 3s1t_A Aspartokinase; ACT doma 90.1 0.7 2.4E-05 42.7 7.4 45 106-150 23-70 (181)
63 4go7_X Aspartokinase; transfer 89.5 0.41 1.4E-05 45.5 5.4 132 344-485 37-178 (200)
64 2nzc_A Hypothetical protein; s 89.3 2.2 7.5E-05 36.0 9.1 70 343-413 6-76 (86)
65 1rwu_A Hypothetical UPF0250 pr 88.1 3.1 0.00011 36.2 9.6 70 343-415 35-108 (109)
66 4go7_X Aspartokinase; transfer 87.9 0.75 2.6E-05 43.7 6.1 56 106-163 42-100 (200)
67 3ab4_A Aspartokinase; aspartat 86.5 2.5 8.6E-05 43.6 9.6 133 101-250 265-406 (421)
68 2h9z_A Hypothetical protein HP 86.0 2.8 9.5E-05 34.8 7.8 70 343-415 14-85 (86)
69 3ced_A Methionine import ATP-b 84.1 2 6.8E-05 36.1 6.1 61 430-490 22-96 (98)
70 2qrr_A Methionine import ATP-b 83.6 2.2 7.7E-05 35.5 6.2 60 430-489 25-97 (101)
71 2nzc_A Hypothetical protein; s 83.1 7.2 0.00025 32.8 9.1 68 99-167 6-76 (86)
72 2qrr_A Methionine import ATP-b 82.7 3.9 0.00013 34.0 7.4 62 184-255 25-97 (101)
73 3l76_A Aspartokinase; alloster 79.7 11 0.00037 41.1 11.4 128 345-481 273-413 (600)
74 3tvi_A Aspartokinase; structur 79.5 9.8 0.00034 40.0 10.7 116 352-480 309-433 (446)
75 3ced_A Methionine import ATP-b 79.0 3.1 0.00011 34.9 5.5 63 184-256 22-96 (98)
76 2qsw_A Methionine import ATP-b 78.4 4.2 0.00015 33.8 6.2 62 184-255 25-97 (100)
77 3trg_A Acylphosphatase; fatty 77.6 3.5 0.00012 34.8 5.5 44 439-482 27-72 (98)
78 2lqj_A Mg2+ transport protein; 75.8 13 0.00044 31.3 8.4 73 344-416 8-84 (94)
79 3dhx_A Methionine import ATP-b 74.9 7.7 0.00026 32.7 6.9 61 429-489 22-95 (106)
80 3c1m_A Probable aspartokinase; 74.2 4.7 0.00016 42.4 6.5 51 107-161 328-378 (473)
81 1gtd_A MTH169; synthetase, FGA 73.4 5.9 0.0002 32.6 5.7 55 345-406 3-66 (85)
82 3c1m_A Probable aspartokinase; 72.8 3.3 0.00011 43.6 5.0 50 352-407 329-378 (473)
83 3trg_A Acylphosphatase; fatty 72.0 4.3 0.00015 34.3 4.6 40 210-250 32-73 (98)
84 1ulr_A Putative acylphosphatas 71.1 6 0.00021 32.6 5.2 43 439-481 17-61 (88)
85 2dgb_A Hypothetical protein PU 70.9 9.2 0.00032 31.3 6.3 52 345-403 4-64 (84)
86 2fhm_A Probable acylphosphatas 70.6 5.9 0.0002 32.8 5.1 43 440-482 18-62 (91)
87 2cdq_A Aspartokinase; aspartat 70.5 16 0.00055 39.1 9.7 77 344-436 339-428 (510)
88 2qsw_A Methionine import ATP-b 68.5 11 0.00037 31.3 6.3 60 430-489 25-97 (100)
89 2cdq_A Aspartokinase; aspartat 68.1 23 0.00079 37.9 10.3 61 99-163 338-411 (510)
90 1w2i_A Acylphosphatase; hydrol 68.0 6.2 0.00021 32.7 4.7 43 439-481 19-63 (91)
91 2wvf_A Hpnikr, putative nickel 67.8 55 0.0019 29.4 11.2 74 343-417 64-138 (148)
92 3tvi_A Aspartokinase; structur 66.8 6.7 0.00023 41.3 5.7 51 352-408 385-435 (446)
93 1jo0_A Hypothetical protein HI 66.6 16 0.00056 31.1 7.1 51 395-464 30-84 (98)
94 1urr_A CG18505 protein; acylph 66.3 7.3 0.00025 33.0 4.9 43 439-481 26-70 (102)
95 3mgj_A Uncharacterized protein 66.2 8.8 0.0003 34.1 5.5 54 355-409 15-71 (118)
96 1q5y_A NIKR, nickel responsive 65.9 42 0.0014 27.4 9.3 72 344-416 5-77 (85)
97 2bjd_A Acylphosphatase; hypert 65.6 7.6 0.00026 32.9 4.8 44 439-482 29-74 (101)
98 2fhm_A Probable acylphosphatas 65.4 8 0.00028 31.9 4.9 39 210-248 22-62 (91)
99 2vh7_A Acylphosphatase-1; hydr 64.9 8.4 0.00029 32.3 4.9 43 439-481 23-67 (99)
100 1ulr_A Putative acylphosphatas 64.7 9.4 0.00032 31.4 5.1 38 210-247 22-61 (88)
101 2gv1_A Probable acylphosphatas 64.5 7.8 0.00027 32.1 4.6 42 439-480 19-62 (92)
102 2gv1_A Probable acylphosphatas 64.2 9.1 0.00031 31.7 5.0 37 210-246 24-62 (92)
103 1rwu_A Hypothetical UPF0250 pr 63.4 42 0.0014 29.1 9.2 68 99-169 35-108 (109)
104 3krm_A Insulin-like growth fac 62.7 35 0.0012 30.0 8.8 128 346-482 4-152 (163)
105 2wvf_A Hpnikr, putative nickel 62.2 39 0.0013 30.4 9.1 73 99-171 64-138 (148)
106 1urr_A CG18505 protein; acylph 62.1 9.6 0.00033 32.2 4.8 39 210-248 31-71 (102)
107 2lqj_A Mg2+ transport protein; 61.7 25 0.00084 29.5 7.2 72 99-171 7-85 (94)
108 1t4a_A PURS; tetramer, complex 61.6 17 0.00058 29.7 6.1 54 346-406 3-65 (84)
109 2hza_A Nickel-responsive regul 61.1 76 0.0026 27.8 10.6 76 341-417 50-126 (133)
110 1aps_A Acylphosphatase; hydrol 60.7 7.1 0.00024 32.7 3.7 46 439-484 22-69 (98)
111 1q5y_A NIKR, nickel responsive 60.5 51 0.0017 26.9 8.8 71 100-170 5-77 (85)
112 1gtd_A MTH169; synthetase, FGA 60.3 13 0.00043 30.6 5.1 55 101-160 3-66 (85)
113 2rjz_A PILO protein; structura 59.9 18 0.00061 32.5 6.4 66 109-174 43-113 (147)
114 1aps_A Acylphosphatase; hydrol 59.9 8.3 0.00028 32.3 4.0 41 210-250 27-69 (98)
115 2zw2_A Putative uncharacterize 59.5 23 0.0008 29.5 6.7 56 344-406 5-70 (92)
116 1w2i_A Acylphosphatase; hydrol 59.1 9.9 0.00034 31.5 4.3 38 210-247 24-63 (91)
117 2vh7_A Acylphosphatase-1; hydr 58.6 10 0.00036 31.8 4.4 38 210-247 28-67 (99)
118 2dgb_A Hypothetical protein PU 57.8 19 0.00065 29.4 5.7 54 101-160 4-66 (84)
119 1tdj_A Biosynthetic threonine 57.6 23 0.00078 38.0 7.9 77 343-424 337-415 (514)
120 2bjd_A Acylphosphatase; hypert 57.5 12 0.0004 31.8 4.5 39 210-248 34-74 (101)
121 2lxf_A Uncharacterized protein 55.7 12 0.0004 33.2 4.4 43 439-481 49-93 (121)
122 3mgj_A Uncharacterized protein 55.5 21 0.00072 31.7 6.0 53 111-163 15-71 (118)
123 2rjz_A PILO protein; structura 53.2 28 0.00097 31.2 6.6 67 353-419 43-112 (147)
124 2hza_A Nickel-responsive regul 52.4 68 0.0023 28.1 8.8 73 99-171 52-126 (133)
125 2bj7_A Nickel responsive regul 51.7 1.2E+02 0.0043 26.5 11.0 76 341-417 52-128 (138)
126 2h9z_A Hypothetical protein HP 50.8 36 0.0012 28.0 6.4 68 99-169 14-85 (86)
127 1t4a_A PURS; tetramer, complex 49.1 30 0.001 28.2 5.6 54 102-160 3-65 (84)
128 2yx5_A UPF0062 protein MJ1593; 48.1 19 0.00065 29.3 4.2 54 346-406 3-66 (83)
129 2zw2_A Putative uncharacterize 46.8 39 0.0013 28.1 6.1 56 100-160 5-70 (92)
130 1o51_A Hypothetical protein TM 45.9 15 0.00053 31.9 3.5 44 450-498 63-107 (114)
131 1vq3_A Phosphoribosylformylgly 45.7 60 0.002 27.5 7.0 55 345-406 16-80 (94)
132 2lxf_A Uncharacterized protein 45.4 16 0.00054 32.3 3.5 39 210-248 54-94 (121)
133 2hh2_A KH-type splicing regula 45.3 34 0.0011 28.9 5.5 42 207-249 27-76 (107)
134 2bj7_A Nickel responsive regul 43.1 1.2E+02 0.0043 26.5 9.1 73 99-171 54-128 (138)
135 2p2r_A Poly(RC)-binding protei 42.7 37 0.0013 26.5 5.1 41 207-248 25-70 (76)
136 2j0w_A Lysine-sensitive aspart 40.5 31 0.0011 36.1 5.5 77 344-436 306-394 (449)
137 2hh2_A KH-type splicing regula 40.1 45 0.0015 28.1 5.5 41 441-482 27-75 (107)
138 2jvz_A KH type-splicing, FAR u 40.0 1.6E+02 0.0056 25.4 9.4 43 205-248 109-156 (164)
139 1tdj_A Biosynthetic threonine 39.5 62 0.0021 34.7 7.7 112 99-248 337-456 (514)
140 1o51_A Hypothetical protein TM 39.2 23 0.00078 30.8 3.6 45 216-265 63-108 (114)
141 1wvn_A Poly(RC)-binding protei 37.8 62 0.0021 25.6 5.7 43 206-249 25-72 (82)
142 2dcl_A Hypothetical UPF0166 pr 37.5 23 0.0008 31.3 3.4 35 449-483 58-93 (127)
143 1dtj_A RNA-binding neurooncolo 37.2 65 0.0022 24.9 5.6 41 207-248 23-71 (76)
144 2j0w_A Lysine-sensitive aspart 37.2 38 0.0013 35.4 5.5 60 99-162 305-376 (449)
145 1vq3_A Phosphoribosylformylgly 36.0 1E+02 0.0035 26.0 7.0 55 101-160 16-80 (94)
146 1zzk_A Heterogeneous nuclear r 35.7 69 0.0024 25.4 5.7 42 206-248 26-72 (82)
147 1x4n_A FAR upstream element bi 35.6 56 0.0019 26.6 5.2 41 207-248 35-80 (92)
148 2axy_A Poly(RC)-binding protei 35.5 42 0.0014 26.2 4.3 41 206-247 24-67 (73)
149 1j5k_A Heterogeneous nuclear r 34.0 62 0.0021 26.1 5.2 42 206-248 33-79 (89)
150 1vig_A Vigilin; RNA-binding pr 33.6 56 0.0019 25.4 4.7 62 182-248 4-68 (71)
151 1rq8_A Conserved hypothetical 33.6 73 0.0025 27.4 5.8 53 395-466 29-85 (104)
152 3dhx_A Methionine import ATP-b 33.5 1.3E+02 0.0043 25.1 7.2 58 357-415 37-94 (106)
153 2p2r_A Poly(RC)-binding protei 33.4 91 0.0031 24.2 5.9 41 441-482 25-70 (76)
154 1ec6_A RNA-binding protein NOV 33.1 88 0.003 25.0 6.0 41 207-248 23-71 (87)
155 2yx5_A UPF0062 protein MJ1593; 32.6 36 0.0012 27.7 3.5 54 102-160 3-66 (83)
156 3krm_A Insulin-like growth fac 31.6 35 0.0012 29.9 3.6 44 204-248 102-152 (163)
157 1wvn_A Poly(RC)-binding protei 31.0 1E+02 0.0035 24.3 6.0 42 441-483 26-72 (82)
158 1zzk_A Heterogeneous nuclear r 30.4 1.1E+02 0.0036 24.3 6.0 41 441-482 27-72 (82)
159 2hh3_A KH-type splicing regula 29.8 63 0.0022 27.4 4.7 42 206-248 30-76 (106)
160 1j4w_A FUSE binding protein; s 29.8 2.9E+02 0.0099 24.3 11.4 129 345-482 3-172 (174)
161 1x4n_A FAR upstream element bi 29.4 1.1E+02 0.0038 24.8 6.0 41 441-482 35-80 (92)
162 1jo0_A Hypothetical protein HI 29.3 94 0.0032 26.3 5.7 52 149-230 30-84 (98)
163 2dcl_A Hypothetical UPF0166 pr 29.2 36 0.0012 30.1 3.2 45 216-265 59-104 (127)
164 1dtj_A RNA-binding neurooncolo 28.9 1.2E+02 0.0041 23.3 5.9 41 441-482 23-71 (76)
165 1rq8_A Conserved hypothetical 28.4 84 0.0029 27.0 5.3 54 149-232 29-85 (104)
166 1vr9_A CBS domain protein/ACT 27.2 13 0.00045 33.9 0.0 58 347-407 141-198 (213)
167 1j5k_A Heterogeneous nuclear r 26.9 1.1E+02 0.0037 24.6 5.5 41 441-482 34-79 (89)
168 1ec6_A RNA-binding protein NOV 25.2 1.6E+02 0.0054 23.5 6.1 41 441-482 23-71 (87)
169 1we8_A Tudor and KH domain con 25.1 1E+02 0.0035 25.6 5.2 41 207-248 35-82 (104)
170 2axy_A Poly(RC)-binding protei 25.1 1.1E+02 0.0039 23.7 5.2 40 441-481 25-67 (73)
171 1vig_A Vigilin; RNA-binding pr 24.9 1.3E+02 0.0043 23.3 5.4 55 427-482 3-68 (71)
172 2hh3_A KH-type splicing regula 23.8 1.3E+02 0.0044 25.4 5.6 41 441-482 31-76 (106)
173 1we8_A Tudor and KH domain con 20.3 1.4E+02 0.0048 24.7 5.1 41 441-482 35-82 (104)
No 1
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=4.5e-55 Score=416.07 Aligned_cols=170 Identities=38% Similarity=0.602 Sum_probs=156.6
Q ss_pred cCCcccccCCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033 328 DPHWGVLNDDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~ 407 (514)
|+|||-+.+. +|+|+|+++|+|+||+|+||+++|+||||||+||+++++++++++||||+|+|+++.++||.|||+
T Consensus 17 ~~~~~~m~~~----~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~ 92 (193)
T 2fgc_A 17 LYFQGHMTDQ----IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAY 92 (193)
T ss_dssp --------------CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHT
T ss_pred hhhhccCCcc----ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 8999998665 579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccEEEEEecCC--chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCc
Q 047033 408 KLIDLHEVRDLTH--LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGI 485 (514)
Q Consensus 408 KLidVikV~dlt~--~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGI 485 (514)
||+||++|.|+++ .++|+||||||||++++. |.||+++|++|||+|||++++++++|+||+++||++|+++|+||||
T Consensus 93 KLidVikV~dl~~~~~~~v~REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi 171 (193)
T 2fgc_A 93 KLVEVVKVTPIDPLPENRVEREMALIKVRFDED-KQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQV 171 (193)
T ss_dssp TSTTEEEEEECCSSGGGEEEEEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGE
T ss_pred CcCceEEEEEecCCCCccceeEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCC
Confidence 9999999999999 999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred EEEeecceeEeeccCCc
Q 047033 486 CEVARTGRVALVRESGV 502 (514)
Q Consensus 486 lEvaRTG~vAl~Rg~~~ 502 (514)
+|++|||++||.||++.
T Consensus 172 ~E~~RtG~val~Rg~~~ 188 (193)
T 2fgc_A 172 EEIARTGIVAMNRWNVK 188 (193)
T ss_dssp EEEEECCCEEEECCCC-
T ss_pred EEEEccChhheecCCcc
Confidence 99999999999999864
No 2
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.2e-52 Score=390.84 Aligned_cols=161 Identities=38% Similarity=0.579 Sum_probs=157.4
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCC
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
|-|+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++|+++.++||.+||+||+||++|.++++
T Consensus 1 ~~m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~ 80 (165)
T 2pc6_A 1 GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSS 80 (165)
T ss_dssp -CEEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGG
T ss_pred CceEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeeccC
Q 047033 421 LPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVRES 500 (514)
Q Consensus 421 ~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~Rg~ 500 (514)
.++|+||||||||++++.+|.||+++|++|||+|||++++++++|+||+++|+++|+++|+||||+|++|||++||.||+
T Consensus 81 ~~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~RtG~~a~~r~~ 160 (165)
T 2pc6_A 81 EGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGE 160 (165)
T ss_dssp SCEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEECCCEEEESTT
T ss_pred cceeeeEEEEEEEeCCcccHHHHHHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEccChhheecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 047033 501 G 501 (514)
Q Consensus 501 ~ 501 (514)
+
T Consensus 161 ~ 161 (165)
T 2pc6_A 161 R 161 (165)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=1.1e-51 Score=383.83 Aligned_cols=160 Identities=34% Similarity=0.532 Sum_probs=157.0
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCc
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++++||||+++|+++.++||.+||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhccCC-cEEEeecceeEeeccC
Q 047033 422 PFAERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLEPYG-ICEVARTGRVALVRES 500 (514)
Q Consensus 422 ~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~pyG-IlEvaRTG~vAl~Rg~ 500 (514)
++|+||||||||++++.+|.||+++|++|||+|||++++++++|+||+++|+++|+++|+||| |+|++|||++||.||+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~~RtG~~a~~r~~ 160 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGD 160 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHHHHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEEEECCCEEEESTT
T ss_pred ccceeEEEEEEEECCcccHHHHHHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEEECcChhheecCc
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999998
Q ss_pred C
Q 047033 501 G 501 (514)
Q Consensus 501 ~ 501 (514)
+
T Consensus 161 ~ 161 (164)
T 2f1f_A 161 K 161 (164)
T ss_dssp C
T ss_pred c
Confidence 5
No 4
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=5.8e-50 Score=381.00 Aligned_cols=160 Identities=41% Similarity=0.628 Sum_probs=152.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCC-
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN- 174 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~- 174 (514)
+|+|+|+++|+|+||+|+||+++|++|||||+||+++++++++ +|||+|+++++.++||.+||+||+||++|.++++
T Consensus 27 ~m~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~~ 106 (193)
T 2fgc_A 27 IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPL 106 (193)
T ss_dssp CEEEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCSS
T ss_pred ceEEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 3689999999999999999999999999999999999999986 4999999999999999999999999999999999
Q ss_pred -hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEE
Q 047033 175 -EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIRE 253 (514)
Q Consensus 175 -~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlE 253 (514)
.+.|+||||||||+++++ |.|| ++++++|||||||+++++++||+||+++||++|+++|+||||+|
T Consensus 107 ~~~~v~REl~LiKV~~~~~-r~ei------------~~i~~~fra~ivDv~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E 173 (193)
T 2fgc_A 107 PENRVEREMALIKVRFDED-KQEI------------FQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEE 173 (193)
T ss_dssp GGGEEEEEEEEEEEECSSC-HHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHSCGGGEEE
T ss_pred CCccceeEEEEEEEeCCcC-HHHH------------HHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhhCCEE
Confidence 999999999999999888 9999 99999999999999999999999999999999999999999999
Q ss_pred EeeccceeeecccccCC
Q 047033 254 IARTGKIALRREKLGAS 270 (514)
Q Consensus 254 vaRTG~iAl~R~~~~~~ 270 (514)
++|||.+||.||+...+
T Consensus 174 ~~RtG~val~Rg~~~~~ 190 (193)
T 2fgc_A 174 IARTGIVAMNRWNVKEG 190 (193)
T ss_dssp EEECCCEEEECCCC---
T ss_pred EEccChhheecCCcccc
Confidence 99999999999985433
No 5
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=4e-49 Score=367.17 Aligned_cols=157 Identities=45% Similarity=0.653 Sum_probs=152.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
|+|+|+++++|+||+|+||+++|++|||||+||+++++++++ +|||+++++++.++|+++||+||+||++|.++++.+
T Consensus 3 m~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~~~~ 82 (165)
T 2pc6_A 3 MRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEG 82 (165)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGGGSC
T ss_pred eEEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 589999999999999999999999999999999999999876 499999999999999999999999999999999999
Q ss_pred hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEee
Q 047033 177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIAR 256 (514)
Q Consensus 177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEvaR 256 (514)
+|+|||||+||++++++|.|+ ++++++|||||||++++++++|+||+++||++|+++|+||||+|++|
T Consensus 83 ~v~rEl~liKv~~~~~~r~~i------------~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~R 150 (165)
T 2pc6_A 83 YVERELMLVKVRAVGKDREEM------------KRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIAR 150 (165)
T ss_dssp EEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEEETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEE
T ss_pred eeeeEEEEEEEeCCcccHHHH------------HHHHHHcCCEEEEEcCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEc
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccceeeecccc
Q 047033 257 TGKIALRREKL 267 (514)
Q Consensus 257 TG~iAl~R~~~ 267 (514)
||.+||.||+.
T Consensus 151 tG~~a~~r~~~ 161 (165)
T 2pc6_A 151 TGVSGLSRGER 161 (165)
T ss_dssp CCCEEEESTTC
T ss_pred cChhheecCcc
Confidence 99999999975
No 6
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=100.00 E-value=2.3e-48 Score=361.52 Aligned_cols=158 Identities=39% Similarity=0.659 Sum_probs=152.9
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecChHHHHHHHHHHhcCcceeeEeecCCh
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
||+|+|+++++|+||+|+||+++|++|||||+||+++++++++ +|||+++++++.++|+++||+||+||++|.++++.
T Consensus 1 ~~~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~~~ 80 (164)
T 2f1f_A 1 MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQG 80 (164)
T ss_dssp -CEEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGGGS
T ss_pred CeEEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcCCc
Confidence 5789999999999999999999999999999999999999875 59999999999999999999999999999999999
Q ss_pred hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCC-cEEE
Q 047033 176 PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG-IREI 254 (514)
Q Consensus 176 ~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG-IlEv 254 (514)
++|+|||||+||++++++|.|+ ++++++|||+|||++++++++|+||+++||++|+++|+||| |+|+
T Consensus 81 ~~v~rEl~liKv~~~~~~r~~i------------~~~~~~fra~ivdv~~~~~~ie~tg~~~ki~~~~~~l~~~g~i~e~ 148 (164)
T 2f1f_A 81 AHVEREIMLVKIQASGYGRDEV------------KRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEV 148 (164)
T ss_dssp CEEEEEEEEEEEECCTHHHHHH------------HHHHHHTTCEEEEECSSEEEEEEEECHHHHHHHHHHHTTTSEEEEE
T ss_pred ccceeEEEEEEEECCcccHHHH------------HHHHHHcCCEEEEECCCEEEEEEeCCHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999999999 99999999999999999999999999999999999999999 9999
Q ss_pred eeccceeeecccc
Q 047033 255 ARTGKIALRREKL 267 (514)
Q Consensus 255 aRTG~iAl~R~~~ 267 (514)
+|||.+||.||+.
T Consensus 149 ~RtG~~a~~r~~~ 161 (164)
T 2f1f_A 149 ARSGVVGLSRGDK 161 (164)
T ss_dssp EECCCEEEESTTC
T ss_pred ECcChhheecCcc
Confidence 9999999999974
No 7
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=99.04 E-value=4.4e-09 Score=92.89 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=88.8
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
..||.|.|++.++|+||+|+||+++|+++|+||++++++.+.+.++.|++ + .+.+...++.++..-. +..
T Consensus 2 ~~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~-~d~~~a~~~L~~~G~~--v~~----- 71 (144)
T 2f06_A 2 NAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--V-SDPDKAYKALKDNHFA--VNI----- 71 (144)
T ss_dssp CSSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--E-SCHHHHHHHHHHTTCC--EEE-----
T ss_pred CccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--e-CCHHHHHHHHHHcCCe--Eee-----
Confidence 35889999999999999999999999999999999999988877787887 3 4666666666654221 111
Q ss_pred CchhhheeeEEEEEecCcccHHHHHHHHHhcCcEEEE---e-cCCE--EEEEEecCHHHHHHHHHHhccCCc
Q 047033 420 HLPFAERELMLIKVAVNTTARRDVLDIATIFRAKAVD---V-SDHT--ITLELTGDLDKMVALQRLLEPYGI 485 (514)
Q Consensus 420 ~~~~V~REL~LIKV~~~~~~R~eI~~la~iFrakIVD---v-s~~s--i~iE~TG~~~KIdafi~lL~pyGI 485 (514)
..+.-+.+.-.+..-.++.++....+.+|.. . +... ++++. +..+...+.|+..|.
T Consensus 72 ------~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g~ 133 (144)
T 2f06_A 72 ------TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKKV 133 (144)
T ss_dssp ------EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTTC
T ss_pred ------eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcCC
Confidence 1344556665555567788877777888843 2 3343 44555 356666677776664
No 8
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.86 E-value=5.6e-08 Score=85.80 Aligned_cols=125 Identities=16% Similarity=0.218 Sum_probs=82.4
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeecCChh
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
.||.|.|+++++|+||+|+||+++|+++|+||++++++.+.+.+.+++++ .+.+...++.++..-.+...
T Consensus 3 ~m~~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~-~d~~~a~~~L~~~G~~v~~~--------- 72 (144)
T 2f06_A 3 AMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV-SDPDKAYKALKDNHFAVNIT--------- 72 (144)
T ss_dssp SSEEEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE-SCHHHHHHHHHHTTCCEEEE---------
T ss_pred ccEEEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe-CCHHHHHHHHHHcCCeEeee---------
Confidence 47899999999999999999999999999999999999888877655554 45555556555542221111
Q ss_pred hHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEE---e-cCC--EEEEEEeCChhHHHHHHHHhccCC
Q 047033 177 QVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVD---I-SEY--SLTIEVTGDPGKMVAVQRNLSKFG 250 (514)
Q Consensus 177 ~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVD---v-s~~--s~~iEvTG~~~kIdafi~~L~~fG 250 (514)
.+.-+.+.-.|..-+++ .++....+..|.. . ++. +++++. +..+...+.|+.-|
T Consensus 73 ----svv~v~~~d~pGvla~i------------~~~L~~~~InI~~~~~~~~~~~~~~~i~~----~d~~~A~~~L~~~g 132 (144)
T 2f06_A 73 ----DVVGISCPNVPGALAKV------------LGFLSAEGVFIEYMYSFANNNVANVVIRP----SNMDKCIEVLKEKK 132 (144)
T ss_dssp ----EEEEEEEESSTTHHHHH------------HHHHHHTTCCEEEEEEEEETTEEEEEEEE----SCHHHHHHHHHHTT
T ss_pred ----eEEEEEeCCCCcHHHHH------------HHHHHHCCCCEEEEEEEccCCcEEEEEEe----CCHHHHHHHHHHcC
Confidence 22333443334334444 6666666777733 2 333 355555 35666777777766
Q ss_pred c
Q 047033 251 I 251 (514)
Q Consensus 251 I 251 (514)
.
T Consensus 133 ~ 133 (144)
T 2f06_A 133 V 133 (144)
T ss_dssp C
T ss_pred C
Confidence 5
No 9
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.85 E-value=2.5e-08 Score=79.94 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=67.3
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
.+.|.+.+.|+||+|++|+++|++.|+||.++.+....+ ...+++.+. .+...++++.++|+++.+|.+|..+...+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~--~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~~~ 82 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG--IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSNLE 82 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS--EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC--EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 578999999999999999999999999999999987543 778888876 46678999999999999999998776543
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.73 E-value=7.7e-08 Score=77.06 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=64.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
..+.|.+.+.|+||+|++|+++|++.|+||.++.+....+...+++.+. .+...+++++++|+++-+|.+|..+..
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~~ 80 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLSN 80 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 4578999999999999999999999999999999987654223666665 456789999999999999999987654
No 11
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.71 E-value=1.6e-07 Score=86.79 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=85.6
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcc----eeeEeecCC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVN----VLKVEDLSN 174 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvd----VikV~dlt~ 174 (514)
++++|+++..|+||++++|+++|+++|+||.+.....+.+.-.|++++.+++...+++.++|.++.+ .+.+...+.
T Consensus 5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 84 (192)
T 1u8s_A 5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTSP 84 (192)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3689999999999999999999999999999999887654444788887776788999999987654 445555443
Q ss_pred hhhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033 175 EPQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY 226 (514)
Q Consensus 175 ~~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~ 226 (514)
.+ -.++...+++.+....|+.++ .+|.++...+++.|.++...
T Consensus 85 ~~-~~~~~~~~~l~v~~~D~~Gil--------~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 85 HD-HQTHAYTVEVYVESDDKLGLT--------EKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp CC-CCCCSEEEEEEEEESCCTTHH--------HHHHHHHHHTTCCEEEEEEE
T ss_pred CC-CccCCceEEEEEEeCCCccHH--------HHHHHHHHHcCCcHHHhhhh
Confidence 33 245555555655444577661 13466777778888775543
No 12
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.66 E-value=2.5e-07 Score=85.50 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=81.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCcc----EEEEEecC
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLID----LHEVRDLT 419 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLid----VikV~dlt 419 (514)
++.|+|...|+||++++|+++++++|+||..+....+ .+...|++++.+++...+++.++|.++.+ ...+...+
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 83 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKRTS 83 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEecCCCCHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5899999999999999999999999999999888774 46677888888776788999999887653 45566555
Q ss_pred CchhhheeeEEEEEecCcccH----HHHHHHHHhcCcEEEEecC
Q 047033 420 HLPFAERELMLIKVAVNTTAR----RDVLDIATIFRAKAVDVSD 459 (514)
Q Consensus 420 ~~~~V~REL~LIKV~~~~~~R----~eI~~la~iFrakIVDvs~ 459 (514)
..+ -.++....+|.+....| .+|.++...+++.|.++..
T Consensus 84 ~~~-~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~ 126 (192)
T 1u8s_A 84 PHD-HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSA 126 (192)
T ss_dssp CCC-CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCC-CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhh
Confidence 433 24444444444333334 3555566667888877643
No 13
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.56 E-value=1.3e-07 Score=76.79 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=58.5
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHHHHHHHHHHhcCccE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DESISKLMQQLYKLIDL 412 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidV 412 (514)
|+++|++...|+||+|++|+++++.+|+||.+++..... +...|++.+... ...++++.++|+++-+.
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999998765 677788877643 36789999999987643
No 14
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.45 E-value=2.2e-07 Score=75.54 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=57.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-hHHHHHHHHHHhcCcceee
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-DKVLQQVMEQLQKLVNVLK 168 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-e~~ieQI~kQLeKLvdVik 168 (514)
++++|.+...|+||+|++|+++++++|+||.++......+...+++.++.. ...++++.++|+++-+...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~~ 74 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLN 74 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999999999999998776333466666533 3578999999998866543
No 15
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=98.01 E-value=2.1e-05 Score=76.55 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC---CCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET---EGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~---~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
|..+|.+..+|+||+|+.|+.+++..+.||.++++..... .+...|+|-++.. .+++++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 5789999999999999999999999999999999977651 3688888666644 9999999999999999999998
Q ss_pred Cchhhhee
Q 047033 420 HLPFAERE 427 (514)
Q Consensus 420 ~~~~V~RE 427 (514)
...-++--
T Consensus 81 ~~~~i~gk 88 (223)
T 1y7p_A 81 SFERVFGK 88 (223)
T ss_dssp CHHHHTCE
T ss_pred chhhhcCc
Confidence 76666543
No 16
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.73 E-value=9.9e-05 Score=71.92 Aligned_cols=143 Identities=17% Similarity=0.309 Sum_probs=92.1
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC----CC-cEEEEEEecChHHHHHHHHHHhcCcceeeEeecC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK----DK-ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te----d~-~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
|..+|.+..+|+||+|+.|+.+++..+.||.++++.... +. ..|+|-++.. .+++++++|+++-+|.+|+.+.
T Consensus 3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~--~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGG--DFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSS--CHHHHHHHHHTCTTEEEEEEEC
T ss_pred ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCC--CHHHHHHHHhCCCCeeEEEEEc
Confidence 567999999999999999999999999999999998765 32 3466445443 9999999999999999999987
Q ss_pred ChhhHHhheeeEEEecCccccccccc--------------------cccc-cchh--hHHHHHHhcCCEEEEecCCEEEE
Q 047033 174 NEPQVERELMLIKVNADPKFRAEIFL--------------------FPCL-GVHL--QIRWLVDIFRAKIVDISEYSLTI 230 (514)
Q Consensus 174 ~~~~V~REL~LiKV~~~~~~r~EI~~--------------------~~~~-~~~~--~i~~l~~~F~akVVDvs~~s~~i 230 (514)
.-..++--=..| + -+..+-+++.+ -|-- -+++ ++..+.+.-|+.++=.+..-
T Consensus 81 ~~~~i~gkrvii-~-gggaqv~qva~gai~eadrhnirgerisvdt~p~vge~~l~~av~av~~lpr~~~lvlags~--- 155 (223)
T 1y7p_A 81 SFERVFGKRVII-L-GGGALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGGI--- 155 (223)
T ss_dssp CHHHHTCEEEEE-E-ECHHHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCSHHHHHHHHHHGGGSTTEEEEEEESSB---
T ss_pred chhhhcCcEEEE-E-CCcHHHHHHHHhhcchhhhcccccceeeeecceecCHHHHHHHHHHHhhccccceeeEeccc---
Confidence 766555433222 1 12233333311 1111 3344 46666666666655443221
Q ss_pred EEeCChhHHHHHHHHhccCCcE
Q 047033 231 EVTGDPGKMVAVQRNLSKFGIR 252 (514)
Q Consensus 231 EvTG~~~kIdafi~~L~~fGIl 252 (514)
=.++|..-++.+++.||.
T Consensus 156 ----mgg~i~~~v~~~~~~~i~ 173 (223)
T 1y7p_A 156 ----MGGKITEEVKKLRKSGIR 173 (223)
T ss_dssp ----CCTHHHHHHHHHGGGTCE
T ss_pred ----ccchHHHHHHHHHHCCCe
Confidence 146777777777777764
No 17
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.21 E-value=0.0045 Score=54.25 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=75.7
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEEEecCCchhh
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEVRDLTHLPFA 424 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV~dlt~~~~V 424 (514)
.|.|...|++|+|+.|+.+++..+.||.++.+.+. +. +.+.++ .+.+.+.++..+++++-++.++....-.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~--i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~~~~~- 75 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPWMPS- 75 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TE--EEEEECCCCHHHHHHHHHHHHHSTTEEEEEEESCCTT-
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CE--EEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEecCCcc-
Confidence 47899999999999999999999999999999665 44 556665 467789999999999999999877553321
Q ss_pred heeeEEEEEecCcccHHHHHHHHHhcCcEEEEecCCEEEEEE
Q 047033 425 ERELMLIKVAVNTTARRDVLDIATIFRAKAVDVSDHTITLEL 466 (514)
Q Consensus 425 ~REL~LIKV~~~~~~R~eI~~la~iFrakIVDvs~~si~iE~ 466 (514)
...+.....+.+....-|+-+..+.-++-+
T Consensus 76 ------------~~~~~~l~~il~~~~~gvi~~D~~g~I~~~ 105 (190)
T 2jhe_A 76 ------------EREHLALSALLEALPEPVLSVDMKSKVDMA 105 (190)
T ss_dssp ------------THHHHHHHHHHHHCSSCEEEECTTCBEEEE
T ss_pred ------------HHHHHHHHHHHHhCCCcEEEEcCCCCEEEE
Confidence 122344555666655556555555544443
No 18
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=97.05 E-value=0.0012 Score=69.63 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=57.6
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEe-CChHHHHHHHHHHhcCccEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVP-ATDESISKLMQQLYKLIDLH 413 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVi 413 (514)
.+|.|.+.|.|+||||.+|+++|...|++|+|+.-.+.. ..+-..+.|+++ ..+..+++.+++|++|-.|.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 589999999999999999999999999999998876542 233468888887 57889999999999986653
No 19
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=97.01 E-value=0.0025 Score=66.19 Aligned_cols=73 Identities=12% Similarity=0.292 Sum_probs=62.3
Q ss_pred EEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 100 RHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
.+.|.+.=+|+||++.+|+.+|++.|+||.++.++...+.++|.|-+++....-+.+.++|+++-.|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 4568888999999999999999999999999999985555667787887644668999999999999998754
No 20
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=96.97 E-value=0.0041 Score=64.60 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=63.7
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
.+.|.+.=+|+||++.+|+.+|+..|+||.++.++. ..++.-|.+-+++....-+.+.++|+++..|++|..+
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 467889999999999999999999999999999998 5567778888887644668999999999999999754
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.90 E-value=0.0072 Score=56.25 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=76.4
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE-EEEEEecCh----HHHHHHHHHHhcCcceeeEee-c
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL-FTIVVYGTD----KVLQQVMEQLQKLVNVLKVED-L 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~-~TIVv~gde----~~ieQI~kQLeKLvdVikV~d-l 172 (514)
++++|.|.-.|+||++++|++.++++|.||.......+.+ .. |++.+..+. ...+++.+.|.++..=..+.. +
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~-~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 82 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGG-DFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASSV 82 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETT-EEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCCC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECC-eEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEEE
Confidence 5789999999999999999999999999999988876432 33 566665332 237888888876653211110 0
Q ss_pred CCh-hhHHhheeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCC
Q 047033 173 SNE-PQVERELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEY 226 (514)
Q Consensus 173 t~~-~~V~REL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~ 226 (514)
... ..-..+-..+.|.+. .|+.|+ .+|.++.-.+++.|.++...
T Consensus 83 ~~~~~~~~~~~~iltv~g~--DrpGiv--------a~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 83 AERHVSPDTREYELYVEGP--DSEGIV--------EAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp ----CCTTEEEEEEEEEEE--CCTTHH--------HHHHHHHHHTTCEEEEEEEE
T ss_pred EeCCcCCCCcEEEEEEEeC--CCcCHH--------HHHHHHHHHcCCCEEEceee
Confidence 000 011124456666653 255441 14578888889999987654
No 22
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.87 E-value=0.0067 Score=53.09 Aligned_cols=69 Identities=13% Similarity=0.300 Sum_probs=58.5
Q ss_pred EEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEe-cChHHHHHHHHHHhcCcceeeEeecC
Q 047033 102 TISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVY-GTDKVLQQVMEQLQKLVNVLKVEDLS 173 (514)
Q Consensus 102 ~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~-gde~~ieQI~kQLeKLvdVikV~dlt 173 (514)
.|.|...|++|+|+.|+.+++..++||.++.+.+. +.+.+.+. .+.+.+.++..+++++-++.++....
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~---g~i~~~~~~~~~~~~~~L~~~l~~i~~~~~~~~~~ 71 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI---GRIYLNFAELEFESFSSLMAEIRRIAGVTDVRTVP 71 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT---TEEEEEECCCCHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC---CEEEEEEEeCCHHHHHHHHHHHHcCCCeeEEEEec
Confidence 47889999999999999999999999999999655 44666665 45678999999999999999876643
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.87 E-value=0.017 Score=53.69 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=76.4
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh----HHHHHHHHHHhcCccEEEEEe-
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD----ESISKLMQQLYKLIDLHEVRD- 417 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde----~~ieQI~kQL~KLidVikV~d- 417 (514)
+++.|.|...|+||+.++|++.++++|.||.....-.+.+ .--|++.+..+. ...++|.+.|.++..=..+..
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~--~f~m~~~v~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 81 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGG--DFAMIVLVSLNAKDGKLIQSALESALPGFQISTRRASS 81 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETT--EEEEEEEEEESSSSSHHHHHHHHHHSTTCEEEEEECCC
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECC--eEEEEEEEEecCccchhHHHHHHHHHHHHHHhcCCeEE
Confidence 4689999999999999999999999999999988876443 232344443221 237888888876642211110
Q ss_pred c--CCchhhheeeEEEEEecCcc--cHHHHHHHHHhcCcEEEEecCC
Q 047033 418 L--THLPFAERELMLIKVAVNTT--ARRDVLDIATIFRAKAVDVSDH 460 (514)
Q Consensus 418 l--t~~~~V~REL~LIKV~~~~~--~R~eI~~la~iFrakIVDvs~~ 460 (514)
+ ... .-..+-..+.|.+... --.+|-++...+++.|.++...
T Consensus 82 ~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 82 VAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp C----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 0 000 1234667888877531 1256677777889999998654
No 24
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.86 E-value=0.0024 Score=67.42 Aligned_cols=73 Identities=11% Similarity=0.159 Sum_probs=57.7
Q ss_pred cccceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecC-C--CcEEEEEEe-cChHHHHHHHHHHhcCccee
Q 047033 95 RTNVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNK-D--KALFTIVVY-GTDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 95 ~~~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d--~~~~TIVv~-gde~~ieQI~kQLeKLvdVi 167 (514)
..-..+|.|.+.|.|+||||.+|+++|...|++|+|+...+.. + ...+-|+++ ..+..+++.+++|++|-.|.
T Consensus 354 ~~~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~~~e~~~~~~~~~~~~~~~v~ 430 (444)
T 3mtj_A 354 EAVRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHVTLEKNVNAAIAKIEALDAVA 430 (444)
T ss_dssp GGCEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECSEEHHHHHHHHHHHTTSTTBC
T ss_pred HHcceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEeccCCHHHHHHHHHHHhcCCccc
Confidence 3445789999999999999999999999999999999876542 1 223555565 57899999999999987664
No 25
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=96.63 E-value=0.17 Score=55.20 Aligned_cols=293 Identities=13% Similarity=0.115 Sum_probs=154.0
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cEEEEEEecCh-HHHHHHHHHHhcCc-------ceeeEeecCChh
Q 047033 106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-ALFTIVVYGTD-KVLQQVMEQLQKLV-------NVLKVEDLSNEP 176 (514)
Q Consensus 106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~~TIVv~gde-~~ieQI~kQLeKLv-------dVikV~dlt~~~ 176 (514)
.+.++||++.||-+.|++.|+|++-++.+..++. .-+++++..++ ....++.+++.+-+ ...+|.
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~------ 350 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEII------ 350 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEE------
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeE------
Confidence 5678999999999999999999999987776543 23777776543 23333344333222 112222
Q ss_pred hHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhccCCcEEEe
Q 047033 177 QVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFGIREIA 255 (514)
Q Consensus 177 ~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fGIlEva 255 (514)
+++.+++|-|--.. ..++.+ --.+++.....+-.|.-++....-|.+.=+.+..+..++.|..--.++.
T Consensus 351 -~~~~~a~VsvVG~gm~~~~Gv--------~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh~~f~~~~- 420 (600)
T 3l76_A 351 -VEKGIAKIAIAGAGMIGRPGI--------AAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALSNAFGVTL- 420 (600)
T ss_dssp -EECSEEEEEEECGGGTTCTTH--------HHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTTCCB-
T ss_pred -ecCCeEEEEEECCCcccCccH--------HHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHHHhhcccC-
Confidence 34456666654322 223333 0022444444455544443333333333344455555555543221110
Q ss_pred eccceeeecccccCCCccccccccCCCCCCCCCccccccccccccccCCCCCCCCceEecCCCCCCcccccccCCccccc
Q 047033 256 RTGKIALRREKLGASAPFWRFSAASYPDLNETPTIDGLVGAGHRPLLSETDTVEGDVYPVEPSDGLTVNQVLDPHWGVLN 335 (514)
Q Consensus 256 RTG~iAl~R~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gdvy~v~~~~~~~~~~~~~~~~~~~~ 335 (514)
.+.... .+ +.| .++.. |+-.
T Consensus 421 ---------t~~~~~-----------~~------------------------------~~~-------~~~v~---Gia~ 440 (600)
T 3l76_A 421 ---------SPPKNQ-----------TD------------------------------TSH-------LPAVR---GVAL 440 (600)
T ss_dssp ---------CCCCCC-----------CC----------------------------------------CCSCC---EEEE
T ss_pred ---------CCcccc-----------cc------------------------------ccc-------cCceE---EEEe
Confidence 000000 00 000 00000 1111
Q ss_pred CCCcccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC--CC--eeEEEEEEeC-ChHHHHHHHHHHhcCc
Q 047033 336 DDDTSGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET--EG--LSRITTVVPA-TDESISKLMQQLYKLI 410 (514)
Q Consensus 336 ~~~~~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~--~~--iSRiTIVV~g-de~~ieQI~kQL~KLi 410 (514)
+.+. .+-++. -+.|+||+..||-+.+++.|+|++=+.....++ .+ ...|+++++. +-+...++.+++.+-+
T Consensus 441 ~~~~---a~i~i~-~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~a~~~l~~~~~~~ 516 (600)
T 3l76_A 441 DQDQ---AQIAIR-HVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDW 516 (600)
T ss_dssp ECSE---EEEEEE-EEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHHHHHHHHHHTTTS
T ss_pred eCCE---EEEEEe-cCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHHHHHHHHHHHHhc
Confidence 1111 133443 589999999999999999999999998887664 24 6789999983 2233444455544433
Q ss_pred cEEEEEecCCchhhheeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc-cCC
Q 047033 411 DLHEVRDLTHLPFAERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE-PYG 484 (514)
Q Consensus 411 dVikV~dlt~~~~V~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~-pyG 484 (514)
+-.+| .++..++.|-|--.. .--..+++.-..-+-+|.=++..-+.|-+.=+.+..+..++.|- .|+
T Consensus 517 ~~~~v-------~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mistSEi~Is~vV~~~~~~~Av~alh~~F~ 589 (600)
T 3l76_A 517 LDAAI-------VVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIATSEIKISCVVPQDRGVDALKAAHSAFN 589 (600)
T ss_dssp TTCEE-------EEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred CCceE-------EEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEcCCceEEEEEeHHHHHHHHHHHHHHhC
Confidence 32222 234556666553221 11245555555555566555555555555555666666665553 455
Q ss_pred c
Q 047033 485 I 485 (514)
Q Consensus 485 I 485 (514)
+
T Consensus 590 l 590 (600)
T 3l76_A 590 L 590 (600)
T ss_dssp T
T ss_pred C
Confidence 3
No 26
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=96.48 E-value=0.014 Score=52.90 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=72.6
Q ss_pred EEEEEE-EeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCch
Q 047033 345 HTLSML-VNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 345 htLSIl-VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
..|++. +.|+||.+.+|...|++.|+||+-++.+.+.+ +...++++++.++ +...++.+++.+-.... .-
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~-------~i 97 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAA-------SI 97 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCS-------EE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCc-------eE
Confidence 355666 79999999999999999999999999876544 5667999998532 23344444433223321 11
Q ss_pred hhheeeEEEEEecCc-----ccHHHHHHHHHhcCcEE--EEecCCEEEEEEe
Q 047033 423 FAERELMLIKVAVNT-----TARRDVLDIATIFRAKA--VDVSDHTITLELT 467 (514)
Q Consensus 423 ~V~REL~LIKV~~~~-----~~R~eI~~la~iFrakI--VDvs~~si~iE~T 467 (514)
.+.+.+++|.|-... .--..+++....++..| +..+..++.+=+-
T Consensus 98 ~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~istse~~is~vv~ 149 (167)
T 2re1_A 98 DGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLID 149 (167)
T ss_dssp EEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEECSSEEEEEEE
T ss_pred EecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEcccCEEEEEEe
Confidence 234567888876543 12357777777777776 4445555555553
No 27
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=96.46 E-value=0.013 Score=61.50 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=62.2
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
..|.|.+.=+|.||||.+|+.+|++.|+||+...-....+-++.-+-+++.....+.+.++|+++-.|++|..+
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 45789999999999999999999999999999997666666666566664355678999999999999998754
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.46 E-value=0.0061 Score=61.45 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=52.2
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhcC
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQKL 163 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeKL 163 (514)
++++++|++.-.|+||+.++||+.++.+|.||..+........++ |.+.++.++ ..++++.+.|+.+
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999875544565 566666432 3466776666543
No 29
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.42 E-value=0.0063 Score=61.38 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=53.0
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--HHHHHHHHHHh
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--ESISKLMQQLY 407 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--~~ieQI~kQL~ 407 (514)
.|+.+++|++...|+||+.++|++.++.+|.||..++.-.....+.--|.+.+..++ ...+++.+.|+
T Consensus 18 ~~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~ 87 (302)
T 3o1l_A 18 QGMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFT 87 (302)
T ss_dssp CCCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHH
T ss_pred cccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHH
Confidence 467889999999999999999999999999999999887555566666666665432 24566665554
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.35 E-value=0.0068 Score=60.76 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=50.5
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC----hHHHHHHHHHHhcC
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT----DKVLQQVMEQLQKL 163 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd----e~~ieQI~kQLeKL 163 (514)
+++++|++.-.|+||+.++||+.++.+|.||..+........++ |.+.++.+ ...++++...|+.+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 56789999999999999999999999999999999875444455 56665544 23466666666543
No 31
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.35 E-value=0.0046 Score=66.03 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=56.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEecChHHHHHHHHHHhcCcceeeEeec
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVLKVEDL 172 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVikV~dl 172 (514)
.-|+|-+...|+||++.+|+.++...|+||.++.++..+.. +.|.|.++.. .-+.+.++|.++-+|.+|..+
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~--~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD--VPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC--CCHHHHHHHHHHHTEEEEEEE
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC--CCHHHHHHHhcCCCccEEEEE
Confidence 45899999999999999999999999999999999987644 4577777642 234566666676777766543
No 32
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.33 E-value=0.0071 Score=60.40 Aligned_cols=65 Identities=5% Similarity=-0.041 Sum_probs=48.7
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecC-hHHHHHHHHHHhc
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGT-DKVLQQVMEQLQK 162 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gd-e~~ieQI~kQLeK 162 (514)
|++++|++.-.|+||+.++||+.|+.+|.||..++.......++ |.+.++.+ +..++++.+.++.
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE 73 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence 56789999999999999999999999999999999875444555 66666542 2335556555543
No 33
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=96.30 E-value=0.0054 Score=65.47 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=60.5
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
.|+|-+...|+||++.+|+.++...|+||.++.++..+..+..=|.|.++. ..-+.+.++|.++.+|.+|..+
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~--~~~~~~l~~l~~~~~i~~v~~v 526 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ--DVPDDVRTAIAAAVDAYKLEVV 526 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS--CCCHHHHHHHHHHHTEEEEEEE
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC--CCCHHHHHHHhcCCCccEEEEE
Confidence 489999999999999999999999999999999999887777778787773 3345566777777788777654
No 34
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.27 E-value=0.0085 Score=59.91 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=50.0
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecCh--HHHHHHHHHHhcC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTD--KVLQQVMEQLQKL 163 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde--~~ieQI~kQLeKL 163 (514)
.+++|++.-.|+||+.++||+.++.+|.||..+....+...++ |.+.++.++ ..++++.+.|+.+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999875555565 555555432 3566777666543
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=96.20 E-value=0.009 Score=59.68 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=48.3
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChHHHHHHHHHHhc
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~~ieQI~kQLeK 162 (514)
++++|++.-.|+||+.++||+.++.+|.||..++.-.+...++ |.+.++.+...++++.+.|+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 5689999999999999999999999999999999875555565 566666543334456555543
No 36
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=96.18 E-value=0.009 Score=59.71 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=66.3
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC--hHHHHHHHHHHhcC---ccE-EEEEe
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT--DESISKLMQQLYKL---IDL-HEVRD 417 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd--e~~ieQI~kQL~KL---idV-ikV~d 417 (514)
+++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+ ...++++...|+.+ .++ +++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~ 85 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD 85 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence 6899999999999999999999999999999998655555655555555432 23455565555432 222 45555
Q ss_pred cCCchhhheeeEEEEEecCcccHHHHHHHHHh--cCcEEEEe
Q 047033 418 LTHLPFAERELMLIKVAVNTTARRDVLDIATI--FRAKAVDV 457 (514)
Q Consensus 418 lt~~~~V~REL~LIKV~~~~~~R~eI~~la~i--FrakIVDv 457 (514)
-... .| + .|=++-...+-..+++-++. ..++|+-|
T Consensus 86 ~~~~---~r-i-~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V 122 (288)
T 3obi_A 86 RETR---RK-V-MLLVSQSDHCLADILYRWRVGDLHMIPTAI 122 (288)
T ss_dssp TTSC---EE-E-EEEECSCCHHHHHHHHHHHTTSSCEEEEEE
T ss_pred cCCC---cE-E-EEEEcCCCCCHHHHHHHHHCCCCCeEEEEE
Confidence 4321 12 2 22233333444455554432 34565554
No 37
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=96.17 E-value=0.0095 Score=59.72 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=49.8
Q ss_pred ccceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC----hHHHHHHHHHHh
Q 047033 340 SGLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT----DESISKLMQQLY 407 (514)
Q Consensus 340 ~~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd----e~~ieQI~kQL~ 407 (514)
..|++++|++...|+||+.++|++.++.+|.||..+........+.--|.+.+..+ ...++++...|+
T Consensus 6 ~~~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~ 77 (292)
T 3lou_A 6 QRPHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFE 77 (292)
T ss_dssp --CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHH
T ss_pred CCCCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHH
Confidence 34568999999999999999999999999999999988754445555555555543 234555655554
No 38
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.06 E-value=0.013 Score=58.60 Aligned_cols=65 Identities=12% Similarity=0.036 Sum_probs=48.5
Q ss_pred ceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HHHHHHHHHH
Q 047033 342 LRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQL 406 (514)
Q Consensus 342 ~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~ieQI~kQL 406 (514)
|.+++|++...|+||+.++|++.++.+|.||..++.......+.--|.+.++.++ ..++++...|
T Consensus 6 ~~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f 71 (286)
T 3n0v_A 6 PDTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGL 71 (286)
T ss_dssp -CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHH
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999887545556555666665422 2345555444
No 39
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.94 E-value=0.061 Score=54.47 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=88.3
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--HHHHHHHHHhcC---cc-EEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--SISKLMQQLYKL---ID-LHEVR 416 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--~ieQI~kQL~KL---id-VikV~ 416 (514)
.+++|++.-.|+||+.++|++.++++|.||..+..... .+.--|.+.+..++. ..+++.+.|..+ .+ -+++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 36899999999999999999999999999999887653 455556666665544 346676666554 22 25566
Q ss_pred ecCCchhhhe-eeEEEEEecCc---ccHHHHHHHHHhcCcEEEEecCCE------EEEEEecCH---HHHH-HHHHHhcc
Q 047033 417 DLTHLPFAER-ELMLIKVAVNT---TARRDVLDIATIFRAKAVDVSDHT------ITLELTGDL---DKMV-ALQRLLEP 482 (514)
Q Consensus 417 dlt~~~~V~R-EL~LIKV~~~~---~~R~eI~~la~iFrakIVDvs~~s------i~iE~TG~~---~KId-afi~lL~p 482 (514)
+.+......+ ...++-+-... ..-.+|.++...++.+|-++..-+ +-+.+.+++ +.+. ++.++...
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~l~~~ 168 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNRVSSE 168 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHHHhhh
Confidence 6554432222 34444443332 223566666666778888776555 335555554 3333 34455566
Q ss_pred CCc
Q 047033 483 YGI 485 (514)
Q Consensus 483 yGI 485 (514)
+++
T Consensus 169 ~~v 171 (415)
T 3p96_A 169 EHV 171 (415)
T ss_dssp HTC
T ss_pred cCc
Confidence 675
No 40
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=95.85 E-value=0.017 Score=57.76 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=68.5
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh---cCccE-EEEEec
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY---KLIDL-HEVRDL 418 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~---KLidV-ikV~dl 418 (514)
++++|++...|+||+.++|++.++.+|.||..++.-.+...+.--|.+.+..+....+++...|+ +-.++ +++.+-
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~~ 85 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGKVVEKYNAEWWFRPR 85 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHHHHGGGTCEEEEEET
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHHHHHHcCCeeEeecc
Confidence 46899999999999999999999999999999998755566766677777654333445554443 32333 555554
Q ss_pred CCchhhheeeEEEEEecCcccHHHHHHHHH--hcCcEEEEe
Q 047033 419 THLPFAERELMLIKVAVNTTARRDVLDIAT--IFRAKAVDV 457 (514)
Q Consensus 419 t~~~~V~REL~LIKV~~~~~~R~eI~~la~--iFrakIVDv 457 (514)
... .| + .|=++-...+-..+++-++ ...++|+-|
T Consensus 86 ~~~---~r-i-~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~V 121 (287)
T 3nrb_A 86 TDR---KK-V-VIMVSKFDHCLGDLLYRHRLGELDMEVVGI 121 (287)
T ss_dssp TCC---CE-E-EEEECSCCHHHHHHHHHHHHTSSCCEEEEE
T ss_pred CCC---cE-E-EEEEeCCCcCHHHHHHHHHCCCCCeEEEEE
Confidence 321 12 2 2223334444455555443 235666654
No 41
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=95.77 E-value=0.037 Score=58.09 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=59.8
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEec
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDL 418 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dl 418 (514)
.|-|.+.=+|.||+|.+|+.+|+..|+||+...-....+-++ ..+=+++..+.-+.+.++|+++-.|++|..+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y--~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY--LVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE--EEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE--EEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 588999999999999999999999999999988666544433 4444443366778999999999999999754
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=95.66 E-value=0.023 Score=51.45 Aligned_cols=128 Identities=16% Similarity=0.179 Sum_probs=71.2
Q ss_pred EEEEEE-EeCchhHHHHHHHHHhccCceeeeEEeeecCCCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCChh
Q 047033 101 HTISVF-VGDESGMINRIAGVFARRGYNIESLAVGLNKDKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNEP 176 (514)
Q Consensus 101 h~Isvl-VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~~ 176 (514)
..|++. +.|+||.+.+|...|++.|+||+.++.+.+.+ + .+++++..++ +...++.+++.+-..... -
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~-------i 97 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAAS-------I 97 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSE-------E
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCce-------E
Confidence 456666 89999999999999999999999999876654 4 4778887533 223333333322223211 1
Q ss_pred hHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHh
Q 047033 177 QVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 177 ~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L 246 (514)
.+.+.++++-|-... ...+.+. -.+++....++-.| +..++.++.+=+-. +..+..++.|
T Consensus 98 ~~~~~~a~vsvvG~~m~~~~Gv~--------a~i~~aL~~~~InI~~istse~~is~vv~~--~d~~~av~~L 160 (167)
T 2re1_A 98 DGDDTVCKVSAVGLGMRSHVGVA--------AKIFRTLAEEGINIQMISTSEIKVSVLIDE--KYMELATRVL 160 (167)
T ss_dssp EEESSEEEEEEECSSCTTCCCHH--------HHHHHHHHHTTCCCCEEEECSSEEEEEEEG--GGHHHHHHHH
T ss_pred EecCCEEEEEEECCCcCCCcCHH--------HHHHHHHHHCCCcEEEEEcccCEEEEEEeH--HHHHHHHHHH
Confidence 234556777665432 2222220 02355555656666 44455655555533 3344444443
No 43
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.63 E-value=0.077 Score=53.72 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=83.7
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEecChH--HHHHHHHHHhcCc---ce-eeEe
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVYGTDK--VLQQVMEQLQKLV---NV-LKVE 170 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~gde~--~ieQI~kQLeKLv---dV-ikV~ 170 (514)
++++|++.-.|+||+.++|++.++++|.||..+..... .+. |.+.+..++. .++++.+.|+.+- .+ +++.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~--~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI--RHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE--TTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE--CCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 57899999999999999999999999999999987653 355 5555665543 3467777775542 22 3444
Q ss_pred ecCChhhHHh-heeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCE------EEEEEeCCh---hHHH
Q 047033 171 DLSNEPQVER-ELMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYS------LTIEVTGDP---GKMV 240 (514)
Q Consensus 171 dlt~~~~V~R-EL~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s------~~iEvTG~~---~kId 240 (514)
+.+......+ ...++-+-.. ..+.++ -.+|.+....++..|.++..-+ +-+.+.+.+ ..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~-~~~~~~--------~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~ 159 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGR-PITAAA--------FGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALR 159 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEES-SCCHHH--------HHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHH
T ss_pred ECCcccccCCCCcEEEEEEeC-CCCHHH--------HHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHH
Confidence 4433211111 1111111111 111121 1155777777788888776555 335565654 3333
Q ss_pred -HHHHHhccCCc
Q 047033 241 -AVQRNLSKFGI 251 (514)
Q Consensus 241 -afi~~L~~fGI 251 (514)
++.++...+++
T Consensus 160 ~~l~~l~~~~~v 171 (415)
T 3p96_A 160 TALNRVSSEEHV 171 (415)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHhhhcCc
Confidence 34455566775
No 44
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=95.24 E-value=0.12 Score=51.79 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=60.7
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLidVikV 415 (514)
.|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=++| ++..+++..+.|++.-.-+++
T Consensus 199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 3678888889999999999999999999999999999875 455667777776 456799999999988665554
No 45
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=94.82 E-value=0.23 Score=45.51 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=73.8
Q ss_pred EEEE-EEeCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCChHHHHHHHHHHhcC---ccEEEEEecCC
Q 047033 346 TLSM-LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPATDESISKLMQQLYKL---IDLHEVRDLTH 420 (514)
Q Consensus 346 tLSI-lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gde~~ieQI~kQL~KL---idVikV~dlt~ 420 (514)
.|++ .+.|+||.+.+|...+++.|+||+-++.+.... .+...|++++..+ ..++..+.|+++ .....+
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~--d~~~a~~~l~~~~~~~~~~~v----- 89 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS--DGRRAMEILKKLQVQGNWTNV----- 89 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH--HHHHHHHHHHTTTTTTTCSEE-----
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc--cHHHHHHHHHHHHHhcCCCeE-----
Confidence 3444 468999999999999999999999998764321 2356788888743 234444445543 222112
Q ss_pred chhhheeeEEEEEecCcc-cH----HHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 421 LPFAERELMLIKVAVNTT-AR----RDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 421 ~~~V~REL~LIKV~~~~~-~R----~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+.+++++|-|-...- .+ ..+++.....+-+| +.-+...+.+=+ +.+..+..++.|.
T Consensus 90 --~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istSe~~Is~vV--~~~d~~~Av~~Lh 153 (178)
T 2dtj_A 90 --LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLI--REDDLDAAARALH 153 (178)
T ss_dssp --EEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEE--EGGGHHHHHHHHH
T ss_pred --EEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEE--eHHHHHHHHHHHH
Confidence 3356788888864322 22 34555444444555 444555544444 4455555555444
No 46
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=94.73 E-value=0.18 Score=50.49 Aligned_cols=72 Identities=22% Similarity=0.401 Sum_probs=58.1
Q ss_pred ceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033 98 VRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 98 ~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV 169 (514)
..+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... + + |-|-++| ++..+++..+.|++.-.-+++
T Consensus 198 ~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~ki 274 (283)
T 2qmx_A 198 RQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNVHNALENLREFATMVKV 274 (283)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEE
Confidence 356788888899999999999999999999999999998754 3 3 5555665 567789999999888655554
No 47
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=94.33 E-value=0.18 Score=45.47 Aligned_cols=122 Identities=13% Similarity=0.150 Sum_probs=71.8
Q ss_pred EeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCchhhheee
Q 047033 351 VNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLPFAEREL 428 (514)
Q Consensus 351 VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~~V~REL 428 (514)
+.|+||++.||.+.+++.|+||+-++.+.+. +.+...++++++.++ +...++.+++.+-... .|. +++.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987652 335567999998433 2233333333222222 332 34678
Q ss_pred EEEEEecCcc-cH----HHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 429 MLIKVAVNTT-AR----RDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 429 ~LIKV~~~~~-~R----~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
++|-|-...- .+ ..+++.....+-+| +.-+...+ -+.=+.+..+..++.|..
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~i--s~vv~~~d~~~Av~~Lh~ 154 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATSEVRI--SVIIPAEYAEAALRAVHQ 154 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEECSSEE--EEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEccCCEE--EEEEeHHHHHHHHHHHHH
Confidence 8887755431 12 34555444444555 44343333 333344555555555543
No 48
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=94.20 E-value=0.21 Score=46.27 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=71.9
Q ss_pred EEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCchhhhee
Q 047033 350 LVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHLPFAERE 427 (514)
Q Consensus 350 lVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~~~V~RE 427 (514)
-+.|+||++.||.+.|++.|.||+-++...++ +.+...++++++.++ +...++.+++.+-+...+| .+.+.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v-------~~~~~ 95 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQL-------LYDDH 95 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEE-------EEESC
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceE-------EEeCC
Confidence 47899999999999999999999999876655 357778999998554 3334444443221221122 22456
Q ss_pred eEEEEEecCc-ccH----HHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHh
Q 047033 428 LMLIKVAVNT-TAR----RDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 428 L~LIKV~~~~-~~R----~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL 480 (514)
+++|-|--.. .++ ..+++.....+-+|.-++...+.+-+.=+.+..+..++.|
T Consensus 96 va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~~~Av~aL 153 (181)
T 3s1t_A 96 IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVAL 153 (181)
T ss_dssp EEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGHHHHHHHH
T ss_pred EEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHHHHHHHHH
Confidence 7777764322 122 3455554444555544433333333333444444444444
No 49
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=94.13 E-value=0.15 Score=51.73 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=58.2
Q ss_pred ccceeEEEEEEEe-CcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeC--ChHHHHHHHHHHhcCcc
Q 047033 340 SGLRSHTLSMLVN-DSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPA--TDESISKLMQQLYKLID 411 (514)
Q Consensus 340 ~~~~khtLSIlVe-N~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~g--de~~ieQI~kQL~KLid 411 (514)
.+-.|-+|.+.+. |+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=+.| ++..+.+..+.|++.-.
T Consensus 197 ~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~ 272 (313)
T 3mwb_A 197 TGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISP 272 (313)
T ss_dssp CSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCT
T ss_pred CCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcC
Confidence 3445778888884 999999999999999999999999988764 455677777877 56678888888887643
No 50
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=93.84 E-value=0.24 Score=50.24 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=56.4
Q ss_pred cceEEEEEEEE-eCchhHHHHHHHHHhccCceeeeEEeeecCCC--cE-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033 97 NVRRHTISVFV-GDESGMINRIAGVFARRGYNIESLAVGLNKDK--AL-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 97 ~~~~h~IsvlV-eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~-~TIVv~g--de~~ieQI~kQLeKLvdVikV 169 (514)
...+-.|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+... .+ |-|-++| ++..+.+..+.|++.-.-+++
T Consensus 198 ~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~ki 276 (313)
T 3mwb_A 198 GADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRF 276 (313)
T ss_dssp SSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEE
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEE
Confidence 34677888888 49999999999999999999999998887654 23 5555665 567788888888876443333
No 51
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=93.60 E-value=0.2 Score=49.79 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=56.1
Q ss_pred eEEEEEEEE---eCchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E---EEEEEecChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFV---GDESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L---FTIVVYGTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlV---eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~---~TIVv~gde~~ieQI~kQLeKLvdVikV 169 (514)
.+-.|.+.+ .|+||.|.++.+.|+.||+|+..|---|+... + + +.+. +-++..+.+..++|++.-.-+++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEE
Confidence 456788888 89999999999999999999999999988654 2 2 3444 55677899999999887655554
No 52
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=93.35 E-value=0.65 Score=41.80 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=68.4
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecC-CCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCChhhHHhhe
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNK-DKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNEPQVEREL 182 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL 182 (514)
+.|+||++.|+.+.|++.|+||+-++.+.+. +.+ -+++++..++ +...++.+++.+-... .|. +++.+
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~-------~~~~~ 95 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAI-------LRPDI 95 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEE-------EECSE
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEE-------EeCCE
Confidence 4899999999999999999999999987652 334 4788887533 2233333332222221 222 23456
Q ss_pred eeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHhccC
Q 047033 183 MLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNLSKF 249 (514)
Q Consensus 183 ~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L~~f 249 (514)
+++-|-... ...+.+. -.+++.....+-.| +.-++.+ +-+.=+.+..+..++.|..-
T Consensus 96 a~vsvVG~gm~~~~Gv~--------a~~f~aL~~~~InI~~is~Se~~--is~vv~~~d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVP--------AKMFQAVASTGANIEMIATSEVR--ISVIIPAEYAEAALRAVHQA 155 (167)
T ss_dssp EEEEEEESSGGGSTHHH--------HHHHHHHHHTTCCCCEEEECSSE--EEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEECCCcccCcCHH--------HHHHHHHHHCCCCEEEEEccCCE--EEEEEeHHHHHHHHHHHHHH
Confidence 666554322 2233330 01233334444455 4434443 33333455566666666543
No 53
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.28 E-value=0.26 Score=44.07 Aligned_cols=110 Identities=7% Similarity=0.109 Sum_probs=68.1
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEE
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLI 431 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LI 431 (514)
.++||++.||.+.|++.|.||+-++.++. +++++++.++ .++++.+.|.+. ..| .+.+.+++|
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~~------~Isf~v~~~~-~~~~il~~l~~~---~~v-------~~~~~~a~v 91 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSEV------GVSLTIDNDK-NLPDIVRALSDI---GDV-------TVDKDMVII 91 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCSS------EEEEEESCCT-THHHHHHHHTTT---EEE-------EEEEEEEEE
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecCC------EEEEEECChH-HHHHHHHHHhcc---CeE-------EEeCCeEEE
Confidence 37899999999999999999999986542 7999998554 678888888772 111 234567888
Q ss_pred EEecCc-----ccHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHh
Q 047033 432 KVAVNT-----TARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 432 KV~~~~-----~~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL 480 (514)
-|--.. ..-..+++... +-.|.-++ .....+.+.=+.+..+..++.|
T Consensus 92 svvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~L 145 (157)
T 3mah_A 92 CIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIAL 145 (157)
T ss_dssp EEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHH
T ss_pred EEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHH
Confidence 765332 11234444333 44443433 2233344444445555555444
No 54
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=92.51 E-value=0.46 Score=47.16 Aligned_cols=72 Identities=26% Similarity=0.304 Sum_probs=57.4
Q ss_pred eEEEEEEE---eCcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 344 SHTLSMLV---NDSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 344 khtLSIlV---eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
|-+|.+.+ .|+||.|.++.+.|+.||+|+..|.--|+.. .+-..+-|=++ -++..+.+..++|++.-.-+++
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e~~~d~~v~~aL~~L~~~~~~~ki 262 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILETLDFKVEM 262 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHHTTEEEEE
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEecCCcHHHHHHHHHHHHhcCeEEE
Confidence 56788888 8999999999999999999999999999865 34455555554 4567799999999887655544
No 55
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=92.21 E-value=0.5 Score=48.24 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=55.2
Q ss_pred EEEEEEEe--CcchHHHHHHHHhhccCceeeeEeeeecCC-CCeeEEEEEEeCC--hHHHHHHHHHHhcCccEEEE
Q 047033 345 HTLSMLVN--DSPGVLNIVTGVFARRGYNIQSLAVGHAET-EGLSRITTVVPAT--DESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 345 htLSIlVe--N~pGVL~RItgLFsRRGyNIeSLtVg~Te~-~~iSRiTIVV~gd--e~~ieQI~kQL~KLidVikV 415 (514)
-++.+.+. |+||.|.++.+.|++||+|+..|.--|+.. ++-..+-|-++|. +..+.+..+.|++.-.-+++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444444 799999999999999999999999998765 3455666667764 57799999999888665554
No 56
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=91.78 E-value=0.35 Score=51.20 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=56.4
Q ss_pred cceEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEE-ecChHHHHHHHHHHhcC-cceeeEe
Q 047033 97 NVRRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVV-YGTDKVLQQVMEQLQKL-VNVLKVE 170 (514)
Q Consensus 97 ~~~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv-~gde~~ieQI~kQLeKL-vdVikV~ 170 (514)
+..+-.|.+.+.|+||.|.++.+.|+.||+|+..|---|+... +- +-|-+ +.++..+.++++.|.+. ..-++|.
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 3457788888999999999999999999999999998887653 32 22222 33455688999999988 5555554
No 57
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=91.43 E-value=0.57 Score=41.84 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=41.0
Q ss_pred eCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHhc
Q 047033 108 GDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQK 162 (514)
Q Consensus 108 eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLeK 162 (514)
.++||++.|+.+.|++.|+||+-++.++ ..+++++...+ .++++.+.|.+
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~----~~Isf~v~~~~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE----VGVSLTIDNDK-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS----SEEEEEESCCT-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC----CEEEEEECChH-HHHHHHHHHhc
Confidence 4789999999999999999999998643 26778887554 67888888877
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=91.41 E-value=0.58 Score=42.78 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=41.7
Q ss_pred EEEE-EEeCchhHHHHHHHHHhccCceeeeEEeeecC--CC-cEEEEEEecChHHHHHHHHHHhcC
Q 047033 102 TISV-FVGDESGMINRIAGVFARRGYNIESLAVGLNK--DK-ALFTIVVYGTDKVLQQVMEQLQKL 163 (514)
Q Consensus 102 ~Isv-lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te--d~-~~~TIVv~gde~~ieQI~kQLeKL 163 (514)
.|++ .+.|+||.+.+|...|++.|+||+-++.+... +. ..+++++..++ .++..+.|+++
T Consensus 17 ~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d--~~~a~~~l~~~ 80 (178)
T 2dtj_A 17 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSD--GRRAMEILKKL 80 (178)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHH--HHHHHHHHHTT
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcccc--HHHHHHHHHHH
Confidence 4555 47999999999999999999999999876432 32 23677766433 34444555543
No 59
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=91.27 E-value=0.7 Score=47.16 Aligned_cols=69 Identities=13% Similarity=0.281 Sum_probs=52.3
Q ss_pred EEEEEEEe--CchhHHHHHHHHHhccCceeeeEEeeecCCC-c-E-EEEEEec--ChHHHHHHHHHHhcCcceeeE
Q 047033 101 HTISVFVG--DESGMINRIAGVFARRGYNIESLAVGLNKDK-A-L-FTIVVYG--TDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 101 h~IsvlVe--N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~-~-~TIVv~g--de~~ieQI~kQLeKLvdVikV 169 (514)
-++.+.+. |+||.|.++.+.|+.||+|+..|.--|+... + + |=|-++| ++..+.+..+.|++.-.-+++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~ki 282 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKT 282 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 34444444 7999999999999999999999998888654 2 2 5556665 467788999999888654444
No 60
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=90.76 E-value=0.63 Score=49.25 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=57.0
Q ss_pred cceeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCC-CeeEEEEEEe-CChHHHHHHHHHHhcC-ccEEEEE
Q 047033 341 GLRSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETE-GLSRITTVVP-ATDESISKLMQQLYKL-IDLHEVR 416 (514)
Q Consensus 341 ~~~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~-~iSRiTIVV~-gde~~ieQI~kQL~KL-idVikV~ 416 (514)
|-.|-+|.+.+.|+||.|.++.+.|+.||+|+..|.--|+... .-..+-|=+. -++..+.++++.|.+. ..-++|-
T Consensus 31 g~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~eh~~d~~v~~AL~eL~~~~~~~vkiL 109 (429)
T 1phz_A 31 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKPVLGSIIKSLRNDIGATVHEL 109 (429)
T ss_dssp SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEeeCCCHHHHHHHHHHHhhccceEEEC
Confidence 4447788888899999999999999999999999999888643 3333333333 2344588999999998 5555553
No 61
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=90.28 E-value=1.8 Score=44.76 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=76.5
Q ss_pred EEEEE-EeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCC-hHHHHHHHHHHhcCccEEEEEecCCch
Q 047033 346 TLSML-VNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPAT-DESISKLMQQLYKLIDLHEVRDLTHLP 422 (514)
Q Consensus 346 tLSIl-VeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gd-e~~ieQI~kQL~KLidVikV~dlt~~~ 422 (514)
.|++. +.|+||.+.||...|++.|+||+-++...++ ..+...++++++.+ .+...++.+++.+-+..- .-
T Consensus 266 ~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~-------~v 338 (421)
T 3ab4_A 266 KVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWT-------NV 338 (421)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCS-------EE
T ss_pred EEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCc-------eE
Confidence 45555 7899999999999999999999999763332 13566899999853 334556666654444321 12
Q ss_pred hhheeeEEEEEecCcc-----cHHHHHHHHHhcCcEE--EEecCCEEEEEEecCHHHHHHHHHHh
Q 047033 423 FAERELMLIKVAVNTT-----ARRDVLDIATIFRAKA--VDVSDHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 423 ~V~REL~LIKV~~~~~-----~R~eI~~la~iFrakI--VDvs~~si~iE~TG~~~KIdafi~lL 480 (514)
.+++.+++|-|-...- --..+++.....+-+| +.-+...+.+=+- .+..+..++.|
T Consensus 339 ~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~L 401 (421)
T 3ab4_A 339 LYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARAL 401 (421)
T ss_dssp EEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHH
T ss_pred EEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHH
Confidence 2356788888865421 1245666554444455 5555555554443 33344444433
No 62
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=90.07 E-value=0.7 Score=42.69 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=36.7
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeEEeeecC-CCcE--EEEEEecCh
Q 047033 106 FVGDESGMINRIAGVFARRGYNIESLAVGLNK-DKAL--FTIVVYGTD 150 (514)
Q Consensus 106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~~--~TIVv~gde 150 (514)
-+.|+||++.||.+.|++.|+||+-++...++ +.+. +++++..++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~ 70 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV 70 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH
Confidence 47899999999999999999999999876555 2444 778887544
No 63
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=89.45 E-value=0.41 Score=45.53 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=73.1
Q ss_pred eEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeEEEEEEeCCh-HHHHHHHHHHhcCccEEEEEecCCc
Q 047033 344 SHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSRITTVVPATD-ESISKLMQQLYKLIDLHEVRDLTHL 421 (514)
Q Consensus 344 khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSRiTIVV~gde-~~ieQI~kQL~KLidVikV~dlt~~ 421 (514)
+-||. -+.|+||+++||-+.+++.|+||+-++.+.++ +.+...++++++.++ +...++.+++.+-+...+|.
T Consensus 37 ~Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~----- 110 (200)
T 4go7_X 37 KVTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLL----- 110 (200)
T ss_dssp EEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEE-----
T ss_pred EEEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEE-----
Confidence 34443 58999999999999999999999999988776 345778888887432 33334444443322222222
Q ss_pred hhhheeeEEEEEecCc-ccH----HHHHHHHHhc--CcEEEEecCCEEEEEEecCHHHHHHHHHHh-ccCCc
Q 047033 422 PFAERELMLIKVAVNT-TAR----RDVLDIATIF--RAKAVDVSDHTITLELTGDLDKMVALQRLL-EPYGI 485 (514)
Q Consensus 422 ~~V~REL~LIKV~~~~-~~R----~eI~~la~iF--rakIVDvs~~si~iE~TG~~~KIdafi~lL-~pyGI 485 (514)
++..++.|-|--.. ... ..+++....- +-+.+.-++-.+.+=+ +.+..+..++.| +.|++
T Consensus 111 --~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV--~~~d~~~Av~aLH~~F~L 178 (200)
T 4go7_X 111 --YDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLC--RDTELDKAVVALHEAFGL 178 (200)
T ss_dssp --EECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEE--EGGGHHHHHHHHHHHHTC
T ss_pred --EecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEE--eHHHHHHHHHHHHHHhCC
Confidence 34455555443221 111 2444443333 3344544444444433 344444444443 34653
No 64
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=89.33 E-value=2.2 Score=35.99 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=61.9
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeee-ecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVG-HAETEGLSRITTVVPATDESISKLMQQLYKLIDLH 413 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg-~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVi 413 (514)
+-..+.|.|+|+--+-.+|-.++++.|-.|.. -+| |..+.+++=|+++++|+.+.+..+..+|.+|-.|-
T Consensus 6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 34799999999999988999999999999886 555 55568899999999999999999999999998875
No 65
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=88.08 E-value=3.1 Score=36.20 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=62.3
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhcc---CceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARR---GYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRR---GyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
..|++.+...+.++..+.|..+|.+. +|.+ ++-++-...+..+|+.+. -+.+.++.|-+.|.+...|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 47999999999999999999999998 8987 557888889999999988 5778999999999999888755
No 66
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=87.92 E-value=0.75 Score=43.70 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=39.7
Q ss_pred EEeCchhHHHHHHHHHhccCceeeeEEeeecCCC-cE--EEEEEecChHHHHHHHHHHhcC
Q 047033 106 FVGDESGMINRIAGVFARRGYNIESLAVGLNKDK-AL--FTIVVYGTDKVLQQVMEQLQKL 163 (514)
Q Consensus 106 lVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~-~~--~TIVv~gde~~ieQI~kQLeKL 163 (514)
-+.|+||++.||-+.|++.|+|||-++.+.++.. +. ++.++..++ .++..+.|+++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d--~~~~~~~l~~~ 100 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV--GPAAVEKLDSL 100 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG--HHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh--HHHHHHHHHHH
Confidence 5899999999999999999999999998876532 22 566665433 34444444444
No 67
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=86.53 E-value=2.5 Score=43.63 Aligned_cols=133 Identities=15% Similarity=0.215 Sum_probs=73.3
Q ss_pred EEEEEE-EeCchhHHHHHHHHHhccCceeeeEEeeecC-CCc--EEEEEEecCh-HHHHHHHHHHhcCcceeeEeecCCh
Q 047033 101 HTISVF-VGDESGMINRIAGVFARRGYNIESLAVGLNK-DKA--LFTIVVYGTD-KVLQQVMEQLQKLVNVLKVEDLSNE 175 (514)
Q Consensus 101 h~Isvl-VeN~pGVLsRIaglFsRRgyNIeSLtVg~Te-d~~--~~TIVv~gde-~~ieQI~kQLeKLvdVikV~dlt~~ 175 (514)
..|++. +.|+||.+.||.+.|++.|+||+-++...++ ..+ .+++++..++ ....++.+++.+-+..-.|
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v------ 338 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNV------ 338 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEE------
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceE------
Confidence 346666 7899999999999999999999999763333 023 4888887533 3344555555443332122
Q ss_pred hhHHhheeeEEEecCc-cccccccccccccchhhHHHHHHhcCCEE--EEecCCEEEEEEeCChhHHHHHHHHhc-cCC
Q 047033 176 PQVERELMLIKVNADP-KFRAEIFLFPCLGVHLQIRWLVDIFRAKI--VDISEYSLTIEVTGDPGKMVAVQRNLS-KFG 250 (514)
Q Consensus 176 ~~V~REL~LiKV~~~~-~~r~EI~~~~~~~~~~~i~~l~~~F~akV--VDvs~~s~~iEvTG~~~kIdafi~~L~-~fG 250 (514)
.+++.++++-|-... ...+.+. -.+++.....+-.| +.-++.++.+=+- .+..+..++.|. .|+
T Consensus 339 -~~~~~~a~vsvVG~gm~~~~Gv~--------a~~f~aL~~~~InI~~is~Se~~is~vV~--~~d~~~Av~~Lh~~f~ 406 (421)
T 3ab4_A 339 -LYDDQVGKVSLVGAGMKSHPGVT--------AEFMEALRDVNVNIELISTSEIRISVLIR--EDDLDAAARALHEQFQ 406 (421)
T ss_dssp -EEECCEEEEEEECGGGTSCTTHH--------HHHHHHHHHTTCCCCEEEEETTEEEEEEE--GGGHHHHHHHHHHHTT
T ss_pred -EEeCCeEEEEEEccCcccCccHH--------HHHHHHHHHCCCCEEEEEcCCCeEEEEEe--HHHHHHHHHHHHHHHh
Confidence 223456766664432 2233330 01133333333333 5556665555443 334444555444 444
No 68
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=86.00 E-value=2.8 Score=34.79 Aligned_cols=70 Identities=6% Similarity=0.182 Sum_probs=59.5
Q ss_pred eeEEEEEEEeCcch-HHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEe-CChHHHHHHHHHHhcCccEEEE
Q 047033 343 RSHTLSMLVNDSPG-VLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVP-ATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 343 ~khtLSIlVeN~pG-VL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~-gde~~ieQI~kQL~KLidVikV 415 (514)
..|++.+...+.++ ..+.|..+| +|++.++. .-++-...+..+|+.+. -+.+.++.|-+.|.+...|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999 999999999 77886542 35667778999999987 5778999999999998888765
No 69
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=84.10 E-value=2 Score=36.08 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=47.3
Q ss_pred EEEEecCcc--cHHHHHHHHHhc-------CcEEEEec---CCEEEEEEec-CHHHHHHHHHHhccCCc-EEEee
Q 047033 430 LIKVAVNTT--ARRDVLDIATIF-------RAKAVDVS---DHTITLELTG-DLDKMVALQRLLEPYGI-CEVAR 490 (514)
Q Consensus 430 LIKV~~~~~--~R~eI~~la~iF-------rakIVDvs---~~si~iE~TG-~~~KIdafi~lL~pyGI-lEvaR 490 (514)
++|+..+.+ ..+-|-++++.| .|+|-.+. -..+++|+.| +.++++++++.|+..|+ +|+..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 788876554 345688888877 45655643 3679999999 89999999999999996 67764
No 70
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=83.58 E-value=2.2 Score=35.54 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred EEEEecCcc--cHHHHHHHHHhcC-------cEEEEec---CCEEEEEEecCHHHHHHHHHHhccCCc-EEEe
Q 047033 430 LIKVAVNTT--ARRDVLDIATIFR-------AKAVDVS---DHTITLELTGDLDKMVALQRLLEPYGI-CEVA 489 (514)
Q Consensus 430 LIKV~~~~~--~R~eI~~la~iFr-------akIVDvs---~~si~iE~TG~~~KIdafi~lL~pyGI-lEva 489 (514)
++|+..+.+ ..+-|-++++.|+ |+|-.+. -.++++|+.|+.++++++++.|+..|+ .|+.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 788876654 3466888888874 4555543 378999999999999999999999996 6766
No 71
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=83.12 E-value=7.2 Score=32.85 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=57.0
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEee-ecCCC--cEEEEEEecChHHHHHHHHHHhcCccee
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVG-LNKDK--ALFTIVVYGTDKVLQQVMEQLQKLVNVL 167 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg-~Ted~--~~~TIVv~gde~~ieQI~kQLeKLvdVi 167 (514)
+-.++.+.|+|+--+-.+|=.++++-|-.|-. -+| |..+. ++++++++|+.+.+..+..+|.+|--|-
T Consensus 6 ri~vigIiVe~r~~~a~kvn~iL~~yg~~I~g-RmGiP~~~~~~~iIsl~v~~~~d~I~aL~gkLg~i~GV~ 76 (86)
T 2nzc_A 6 RFYILTIVVEDREKAYRQVNELLHNFSEDILL-RVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGVR 76 (86)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTGGGEEE-EEEEEEGGGTEEEEEEEEEECHHHHHHHHHHHHTSTTEE
T ss_pred eEEEEEEEEeCchhhHHHHHHHHHhccCEEEE-EcCCCcCcCCceEEEEEEECCHHHHHHHHHHhCCCCCEE
Confidence 56799999999999888999999999999874 344 33333 4699999999999999999999997764
No 72
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=82.71 E-value=3.9 Score=34.05 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=45.4
Q ss_pred eEEEecCccccccccccccccchhhHHHHHHhcCC-------EEEEecC---CEEEEEEeCChhHHHHHHHHhccCCc-E
Q 047033 184 LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA-------KIVDISE---YSLTIEVTGDPGKMVAVQRNLSKFGI-R 252 (514)
Q Consensus 184 LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~a-------kVVDvs~---~s~~iEvTG~~~kIdafi~~L~~fGI-l 252 (514)
++|+....+.-.+ +-|.++++.|+. +|-.+.. ..+++|+.|++++++++++.|+..|+ +
T Consensus 25 lv~l~f~g~~~~~----------pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (101)
T 2qrr_A 25 LVRMEFTGATVDA----------PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKV 94 (101)
T ss_dssp EEEEEECTTSCSS----------CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEcCCCcCc----------hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 6777765432222 124889998854 4555433 78999999999999999999999997 6
Q ss_pred EEe
Q 047033 253 EIA 255 (514)
Q Consensus 253 Eva 255 (514)
|..
T Consensus 95 Evl 97 (101)
T 2qrr_A 95 EVL 97 (101)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 73
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=79.66 E-value=11 Score=41.07 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=79.4
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-HHHHHHHHHHhcCc-------cEEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-ESISKLMQQLYKLI-------DLHEVR 416 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-~~ieQI~kQL~KLi-------dVikV~ 416 (514)
-++. .+.+.||++.||.+.|++.|.|++-++.+..+ .+...|+++++.++ +...++.+++.+-+ ...+|
T Consensus 273 i~i~-~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~-~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v- 349 (600)
T 3l76_A 273 VALL-RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHD-GNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEI- 349 (600)
T ss_dssp EEEE-EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCB-TTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEE-
T ss_pred EEEe-CCCCcccHHHHHHHHHHHcCCCEEEEEeeccC-CCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCccee-
Confidence 3444 56789999999999999999999999877654 35678999998543 23344444443321 11122
Q ss_pred ecCCchhhheeeEEEEEecCc-----ccHHHHHHHHHhcCcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 417 DLTHLPFAERELMLIKVAVNT-----TARRDVLDIATIFRAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 417 dlt~~~~V~REL~LIKV~~~~-----~~R~eI~~la~iFrakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
.+++.+++|-|.-.. ..-..+++.....+.+|.-++..-+.|-+.=+.+..+..++.|.
T Consensus 350 ------~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~istSe~~Is~vI~~~d~~~Av~aLh 413 (600)
T 3l76_A 350 ------IVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMISTSEVKVSCVIDQRDADRAIAALS 413 (600)
T ss_dssp ------EEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHH
T ss_pred ------EecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEecCCCEEEEEEcHHHHHHHHHHHH
Confidence 245668888875432 12356777777666666555433344444444455555555544
No 74
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=79.48 E-value=9.8 Score=40.05 Aligned_cols=116 Identities=8% Similarity=0.131 Sum_probs=72.4
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChH--HHHHHHHHHhcCccEEEEEecCCchhhheeeE
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDE--SISKLMQQLYKLIDLHEVRDLTHLPFAERELM 429 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~--~ieQI~kQL~KLidVikV~dlt~~~~V~REL~ 429 (514)
.++||++.||...|++.|+||+-++.++ ..++++++.++. ..+++.++|.+.+..-+| .+.+.++
T Consensus 309 ~~~~g~~~~if~~l~~~~i~vd~i~~~~------~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v-------~v~~~vA 375 (446)
T 3tvi_A 309 NSEVGFCRKILSILEMYGVSFEHMPSGV------DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSI-------EIHPNMA 375 (446)
T ss_dssp GGSTTHHHHHHHHHHTTTCCEEEBCEET------TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEE-------EEEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCcEEEEecCC------CEEEEEEecchHHHHHHHHHHHHHHhcCCCcE-------EEeCCeE
Confidence 4789999999999999999999987653 368899985442 467788888775542222 3456788
Q ss_pred EEEEecCc-----ccHHHHHHHHHhcCcEEEEec--CCEEEEEEecCHHHHHHHHHHh
Q 047033 430 LIKVAVNT-----TARRDVLDIATIFRAKAVDVS--DHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 430 LIKV~~~~-----~~R~eI~~la~iFrakIVDvs--~~si~iE~TG~~~KIdafi~lL 480 (514)
+|-|--.. .--..+++.....+-+|.-++ ...+.|-+.=+.+..+..++.|
T Consensus 376 ~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aL 433 (446)
T 3tvi_A 376 LVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSI 433 (446)
T ss_dssp EEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHH
T ss_pred EEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHH
Confidence 88874332 123456666655566665544 3233333333344444444433
No 75
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=78.95 E-value=3.1 Score=34.88 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred eEEEecCccccccccccccccchhhHHHHHHhcC-------CEEEEec---CCEEEEEEeC-ChhHHHHHHHHhccCCc-
Q 047033 184 LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFR-------AKIVDIS---EYSLTIEVTG-DPGKMVAVQRNLSKFGI- 251 (514)
Q Consensus 184 LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~-------akVVDvs---~~s~~iEvTG-~~~kIdafi~~L~~fGI- 251 (514)
++|+....+.-.+ +-|.++++.|+ |+|-.+. -..+++|+.| ++++++++++.|+..|+
T Consensus 22 lvrL~f~g~~~~~----------PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~ 91 (98)
T 3ced_A 22 IVRLVFAGSTTTE----------PIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVK 91 (98)
T ss_dssp EEEEEEEEESCHH----------HHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCE
T ss_pred EEEEEECCCccCc----------hHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCE
Confidence 7777765432221 23478888874 5666644 3679999999 89999999999999997
Q ss_pred EEEee
Q 047033 252 REIAR 256 (514)
Q Consensus 252 lEvaR 256 (514)
+|...
T Consensus 92 vEvlg 96 (98)
T 3ced_A 92 MEVLR 96 (98)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 67764
No 76
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=78.39 E-value=4.2 Score=33.76 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=45.0
Q ss_pred eEEEecCccccccccccccccchhhHHHHHHhcCC-------EEEEec---CCEEEEEEeCChhHHHHHHHHhccCCc-E
Q 047033 184 LIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRA-------KIVDIS---EYSLTIEVTGDPGKMVAVQRNLSKFGI-R 252 (514)
Q Consensus 184 LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~a-------kVVDvs---~~s~~iEvTG~~~kIdafi~~L~~fGI-l 252 (514)
++|+....+.-.+ +-|.++++.|+. +|-.+. -..+++|+.|++++++++++.|+..|+ +
T Consensus 25 lv~l~f~g~~~~~----------pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~v 94 (100)
T 2qsw_A 25 IVRLLFHGEQAKL----------PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVET 94 (100)
T ss_dssp EEEEEEESCSCSS----------CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEcCCCcCc----------hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEE
Confidence 7788765432222 124788888754 555543 367999999999999999999999997 6
Q ss_pred EEe
Q 047033 253 EIA 255 (514)
Q Consensus 253 Eva 255 (514)
|..
T Consensus 95 Evl 97 (100)
T 2qsw_A 95 EVI 97 (100)
T ss_dssp EES
T ss_pred EEc
Confidence 765
No 77
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=77.60 E-value=3.5 Score=34.84 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=40.7
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|..++ +.|-...++++.+++-|+++++++|++.|+.
T Consensus 27 FR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~ 72 (98)
T 3trg_A 27 FRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE 72 (98)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh
Confidence 3889999999886 8899999999999999999999999999986
No 78
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=75.80 E-value=13 Score=31.27 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=57.7
Q ss_pred eEEEEEEEe--CcchHHHHHHHHhhccCceeeeEeeeecCCCCe-eEEEEEEe-CChHHHHHHHHHHhcCccEEEEE
Q 047033 344 SHTLSMLVN--DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGL-SRITTVVP-ATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 344 khtLSIlVe--N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~i-SRiTIVV~-gde~~ieQI~kQL~KLidVikV~ 416 (514)
.|++.+.+. +..-|.+.+.....+-+|.+.+|...+.++..+ -+-+++.. -++..+++|+.+|.....|..|.
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~ 84 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVH 84 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 588888775 567788889999999999999999877663334 34444444 46778999999999999999886
No 79
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=74.95 E-value=7.7 Score=32.74 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=45.7
Q ss_pred EEEEEecCcc--cHHHHHHHHHhcCc-------EEEEe---cCCEEEEEEecCHHHHHHHHHHhccCCc-EEEe
Q 047033 429 MLIKVAVNTT--ARRDVLDIATIFRA-------KAVDV---SDHTITLELTGDLDKMVALQRLLEPYGI-CEVA 489 (514)
Q Consensus 429 ~LIKV~~~~~--~R~eI~~la~iFra-------kIVDv---s~~si~iE~TG~~~KIdafi~lL~pyGI-lEva 489 (514)
.++|+....+ ..+-|-++++.|+. +|=.+ .-+++++|++|+++++++.++.|+..|+ .|+.
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 4777766543 34678888888864 44443 4467999999999999999999999996 4543
No 80
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=74.22 E-value=4.7 Score=42.44 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=38.6
Q ss_pred EeCchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecChHHHHHHHHHHh
Q 047033 107 VGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTDKVLQQVMEQLQ 161 (514)
Q Consensus 107 VeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde~~ieQI~kQLe 161 (514)
..|+||++.|+...|++.|+||+-++.+.++ ..++++++.++ .++..+.|+
T Consensus 328 m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~~d--~~~a~~~L~ 378 (473)
T 3c1m_A 328 MVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSEED--VDKALKALK 378 (473)
T ss_dssp SSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEGGG--HHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEechH--HHHHHHHHH
Confidence 3789999999999999999999999975544 25788887644 344544443
No 81
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=73.44 E-value=5.9 Score=32.57 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=40.8
Q ss_pred EEEEEEEeCcchHHH----HHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHH
Q 047033 345 HTLSMLVNDSPGVLN----IVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQL 406 (514)
Q Consensus 345 htLSIlVeN~pGVL~----RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL 406 (514)
+...|.|..|||||+ .|.+-..+.||+++++.+|. ++++.+++++ +.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTTD-------VITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEE-------EEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEE-------EEEEEecCCCHHHHHHHHHHHHHHh
Confidence 567889999999996 45566699999999988875 5888888762 3455555554
No 82
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=72.81 E-value=3.3 Score=43.55 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=38.8
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY 407 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~ 407 (514)
.|+||++.||...+++.|+||+-++.+.++. .|+++++.++ .++..+.|+
T Consensus 329 ~~~~G~~a~if~~La~~~InV~~IsQ~tse~----~Is~~V~~~d--~~~a~~~L~ 378 (473)
T 3c1m_A 329 VGVSGTAARIFKALGEEEVNVILISQGSSET----NISLVVSEED--VDKALKALK 378 (473)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEEECCTTC----CEEEEEEGGG--HHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEEecCCCC----EEEEEEechH--HHHHHHHHH
Confidence 6889999999999999999999999755542 5889998533 445555554
No 83
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=71.99 E-value=4.3 Score=34.30 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=37.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG 250 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG 250 (514)
.++|+.++ |.|-...+.++.+++.|+++.+++|++.|+. |
T Consensus 32 ~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~l~~f~~~l~~-g 73 (98)
T 3trg_A 32 RKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLWE-G 73 (98)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTT-C
T ss_pred HHHHHHcCCeEEEEECCCCEEEEEEEECHHHHHHHHHHHHh-C
Confidence 89999988 8899999999999999999999999999986 5
No 84
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=71.14 E-value=6 Score=32.56 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=38.7
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.++ +.|-..+++++.+++.|+++++++|++.|+
T Consensus 17 FR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 17 YRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 3888999999874 678899999999999999999999999997
No 85
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=70.88 E-value=9.2 Score=31.33 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=38.5
Q ss_pred EEEEEEEeCcchHHH----HHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCC-hHH----HHHHH
Q 047033 345 HTLSMLVNDSPGVLN----IVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPAT-DES----ISKLM 403 (514)
Q Consensus 345 htLSIlVeN~pGVL~----RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gd-e~~----ieQI~ 403 (514)
+...|.|..|||||+ .|.+-..+.||+++++.+|. ++++...++ ++. ++++.
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~ 64 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGK-------VLEIVFPAENLLEAEEKAKAMG 64 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEE-------EEEEEEECSSHHHHHHHHHHHH
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEE-------EEEEEecCCCHHHHHHHHHHHH
Confidence 567888899999996 45566899999999888864 477777754 333 55555
No 86
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=70.60 E-value=5.9 Score=32.75 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 440 RRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 440 R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
|.-+.++|+.++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 18 R~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 18 RYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 888999999874 6788999999999999999999999999974
No 87
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=70.47 E-value=16 Score=39.05 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=55.6
Q ss_pred eEEEEEEEe-----CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh--------HHHHHHHHHHhcCc
Q 047033 344 SHTLSMLVN-----DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD--------ESISKLMQQLYKLI 410 (514)
Q Consensus 344 khtLSIlVe-----N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde--------~~ieQI~kQL~KLi 410 (514)
+....|.+. ++||++.||-..|++.|+||+-++-+ ...|+++++.++ +.++++.++|.+.-
T Consensus 339 ~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss------e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~ 412 (510)
T 2cdq_A 339 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHVVEELEKIA 412 (510)
T ss_dssp EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE------TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC------CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCC
Confidence 444445554 58999999999999999999999654 246999998543 46788888887732
Q ss_pred cEEEEEecCCchhhheeeEEEEEecC
Q 047033 411 DLHEVRDLTHLPFAERELMLIKVAVN 436 (514)
Q Consensus 411 dVikV~dlt~~~~V~REL~LIKV~~~ 436 (514)
.| .+++.+++|-|--.
T Consensus 413 ~v----------~~~~~~a~VsiVG~ 428 (510)
T 2cdq_A 413 VV----------NLLKGRAIISLIGN 428 (510)
T ss_dssp EE----------EEEEEEEEEEEEEC
T ss_pred eE----------EEeCCcEEEEEEEE
Confidence 21 22467888888655
No 88
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=68.53 E-value=11 Score=31.26 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=45.9
Q ss_pred EEEEecCcc--cHHHHHHHHHhcC-------cEEEEec---CCEEEEEEecCHHHHHHHHHHhccCCc-EEEe
Q 047033 430 LIKVAVNTT--ARRDVLDIATIFR-------AKAVDVS---DHTITLELTGDLDKMVALQRLLEPYGI-CEVA 489 (514)
Q Consensus 430 LIKV~~~~~--~R~eI~~la~iFr-------akIVDvs---~~si~iE~TG~~~KIdafi~lL~pyGI-lEva 489 (514)
++|+..+.. ..+-|-++++.|+ |+|-.+. -+++++|+.|+.++++++++.|+..|+ .|+.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 677766543 3456888888774 4555543 378999999999999999999999996 6765
No 89
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=68.13 E-value=23 Score=37.87 Aligned_cols=61 Identities=16% Similarity=0.435 Sum_probs=44.9
Q ss_pred eEEEEEEEEe-----CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecC--------hHHHHHHHHHHhcC
Q 047033 99 RRHTISVFVG-----DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT--------DKVLQQVMEQLQKL 163 (514)
Q Consensus 99 ~~h~IsvlVe-----N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd--------e~~ieQI~kQLeKL 163 (514)
++....+.+. ++||++.||-..|++.|+||+-++-+ ..-++++++.+ ++.++++.++|++.
T Consensus 338 ~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~ 411 (510)
T 2cdq_A 338 KRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDPSKLWSRELIQQELDHVVEELEKI 411 (510)
T ss_dssp EEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTT
T ss_pred cCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCC
Confidence 3445555554 58999999999999999999999643 33478888753 34677888888763
No 90
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=68.00 E-value=6.2 Score=32.74 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.++ +.|-...++++.+++.|+++++++|++.|+
T Consensus 19 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 19 FRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 3888999999774 678899999999999999999999999997
No 91
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=67.75 E-value=55 Score=29.45 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=60.2
Q ss_pred eeEEEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 343 RSHTLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 343 ~khtLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
.--+|++..+++ .++-.+++.+.....=.|.|-.=-+- +.+..=.+|++.|+.+.|..+..+|..+-.|..+.-
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhl-d~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHM-DEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEEC-SSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 456899999888 78888999999888777766333333 236677899999999999999999999999998875
No 92
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=66.78 E-value=6.7 Score=41.31 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=40.9
Q ss_pred eCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhc
Q 047033 352 NDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYK 408 (514)
Q Consensus 352 eN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~K 408 (514)
.++|||.+|+...+++.|+||.-++-|.+|. +|+++|+ ++..++.++-|++
T Consensus 385 ~~~~Gvaarif~aLa~~~InI~mIsqgtSei----~Is~vV~--~~d~~~Av~aLH~ 435 (446)
T 3tvi_A 385 AKTKGIANKIFTALSKENVNIRMIDQGSSEI----NVIVGVE--TVDFEKAVKSIYN 435 (446)
T ss_dssp SSCTTHHHHHHHHHHHTTCCEEEEEECSCTT----EEEEEEE--GGGHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHCCCCEEEEEecCCCc----eEEEEEc--HHHHHHHHHHHHH
Confidence 4699999999999999999999999987765 4888888 3455566665543
No 93
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=66.60 E-value=16 Score=31.06 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEEEecCcc---cHHH-HHHHHHhcCcEEEEecCCEEEE
Q 047033 395 TDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNTT---ARRD-VLDIATIFRAKAVDVSDHTITL 464 (514)
Q Consensus 395 de~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIKV~~~~~---~R~e-I~~la~iFrakIVDvs~~si~i 464 (514)
++..+++|-.+|++ ||| |||++... ++.+ ..+||+.-+|.+|++-.+++++
T Consensus 30 T~~vi~ei~~aL~~-----------------~EL--IKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~~vL 84 (98)
T 1jo0_A 30 TEGVLAEIENALNH-----------------HEL--IKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVL 84 (98)
T ss_dssp CHHHHHHHHHHHHH-----------------HSE--EEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCe--EEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEE
Confidence 56677777777765 665 56655433 3433 5568999999999999888876
No 94
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=66.34 E-value=7.3 Score=32.96 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.++ +.|-..+++++.+++-|+++++++|++.|+
T Consensus 26 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~ 70 (102)
T 1urr_A 26 FRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLE 70 (102)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 3889999999874 678999999999999999999999999997
No 95
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=66.17 E-value=8.8 Score=34.11 Aligned_cols=54 Identities=15% Similarity=0.341 Sum_probs=41.3
Q ss_pred chHHHHHHHHhhccC--ceeeeEeeeecC-CCCeeEEEEEEeCChHHHHHHHHHHhcC
Q 047033 355 PGVLNIVTGVFARRG--YNIQSLAVGHAE-TEGLSRITTVVPATDESISKLMQQLYKL 409 (514)
Q Consensus 355 pGVL~RItgLFsRRG--yNIeSLtVg~Te-~~~iSRiTIVV~gde~~ieQI~kQL~KL 409 (514)
.|+|+|+..+.-..| |.|..+.||.+. ++...||.+.-+ |++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~-d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGR-DERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecC-CHHHHHHHHHHHHHc
Confidence 488999998887665 899999999864 344555543333 788999999999876
No 96
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=65.93 E-value=42 Score=27.35 Aligned_cols=72 Identities=6% Similarity=-0.043 Sum_probs=56.5
Q ss_pred eEEEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033 344 SHTLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 344 khtLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~ 416 (514)
--+|++..+++ .++-.|++.+.....=.|.|-.=-+- +.+..=.++++.|+.+.++.+..+|..+-.|..+.
T Consensus 5 ~Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhl-d~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 5 FAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeee-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 35788888888 67888999999887766666333333 23366688999999999999999999998887665
No 97
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=65.60 E-value=7.6 Score=32.94 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=39.5
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhcc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~p 482 (514)
-|.-+.++|+.++ +.|-...++++.+++.|+++++++|++.|+.
T Consensus 29 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 29 FRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 3889999999875 6788999999999999999999999999973
No 98
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=65.41 E-value=8 Score=31.94 Aligned_cols=39 Identities=8% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 22 ~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 62 (91)
T 2fhm_A 22 QMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN 62 (91)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 78888876 6799999999999999999999999999974
No 99
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=64.87 E-value=8.4 Score=32.34 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.++ +.|-...++++.+++-|+++++++|++.|+
T Consensus 23 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 23 FRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 3889999999875 678899999999999999999999999996
No 100
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=64.73 E-value=9.4 Score=31.39 Aligned_cols=38 Identities=5% Similarity=0.011 Sum_probs=34.5
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.++|+.++ |.|-...+.++.+++.|+++.+++|++.|+
T Consensus 22 ~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 61 (88)
T 1ulr_A 22 QKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK 61 (88)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 78888876 679999999999999999999999999997
No 101
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=64.46 E-value=7.8 Score=32.12 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhc--CcEEEEecCCEEEEEEecCHHHHHHHHHHh
Q 047033 439 ARRDVLDIATIF--RAKAVDVSDHTITLELTGDLDKMVALQRLL 480 (514)
Q Consensus 439 ~R~eI~~la~iF--rakIVDvs~~si~iE~TG~~~KIdafi~lL 480 (514)
-|.-+.++|+.+ .+.|-..+++++.+++.|+++++++|++.|
T Consensus 19 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 19 FRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp CCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 377888899876 588999999999999999999999999999
No 102
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=64.22 E-value=9.1 Score=31.72 Aligned_cols=37 Identities=11% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHh
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNL 246 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L 246 (514)
.++|+.++ |.|-...+.++.+++.|+++.+++|++.|
T Consensus 24 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 24 QYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp HHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 78888764 88999999999999999999999999999
No 103
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=63.37 E-value=42 Score=29.07 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=53.9
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhcc---CceeeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARR---GYNIESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRR---gyNIeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
..+.+.+...+.++....|..+|.+. +|.+ ++-++....+ +||.+. .+.+.++.|=+.|.+.-.|+-|
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~---~~r~Ss~GkY~Svtv~v~v~S~eQv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP---TVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMV 108 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE---EEEESSCSSEEEEEEEECCSSHHHHHHHHHHHSCSSSCEEE
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc---eecCCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999999999999888 8887 3455544444 666665 4577899999999988877654
No 104
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=62.73 E-value=35 Score=29.99 Aligned_cols=128 Identities=13% Similarity=0.204 Sum_probs=73.7
Q ss_pred EEEEEEeCcchHHHHHHHHhhccCceeeeE--------eeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 346 TLSMLVNDSPGVLNIVTGVFARRGYNIQSL--------AVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 346 tLSIlVeN~pGVL~RItgLFsRRGyNIeSL--------tVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
++.+++.+. .+..+.-+.|-||..| .+.+...++-..=++++.|+.+.+.+....+..++.-. ..
T Consensus 4 ~~~~~ip~~-----~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~--~~ 76 (163)
T 3krm_A 4 MVQVFIPAQ-----AVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE--NF 76 (163)
T ss_dssp EEEEEEEGG-----GHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT--TS
T ss_pred EEEEEechh-----hcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc--cc
Confidence 555666553 4566777777777633 44443333333345666788887777766654432210 00
Q ss_pred cCCchhhheeeEEEEEecCc------ccHHHHHHHHHhcCcEEEEecCCE-------EEEEEecCHHHHHHHHHHhcc
Q 047033 418 LTHLPFAERELMLIKVAVNT------TARRDVLDIATIFRAKAVDVSDHT-------ITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 418 lt~~~~V~REL~LIKV~~~~------~~R~eI~~la~iFrakIVDvs~~s-------i~iE~TG~~~KIdafi~lL~p 482 (514)
..+.... ...+-+.|.... ..-..|-+|.+.++|+| ++.++. -++.++|+++.+++..+++..
T Consensus 77 ~~~~~~~-~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 77 FGPKEEV-KLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SCSSCCC-CEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred cccccCC-ceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 1111111 111223343321 12246888999999997 787664 389999999999988877653
No 105
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=62.20 E-value=39 Score=30.45 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=58.6
Q ss_pred eEEEEEEEEeCc-hhHHHHHHHHHhccCceeee-EEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 99 RRHTISVFVGDE-SGMINRIAGVFARRGYNIES-LAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 99 ~~h~IsvlVeN~-pGVLsRIaglFsRRgyNIeS-LtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
.--+|++..+++ .++-.+++.+.....=.|-| +.+-..++....+|++.|+.+.+..+..+|..+-.|..+.-
T Consensus 64 ~~Gvi~ivydh~~~~l~~~l~~iqh~~~d~Iis~~Hvhld~~~clEvivv~G~~~~I~~l~~kl~~lkGV~~~kl 138 (148)
T 2wvf_A 64 KIAVLVVIYDGGQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKL 138 (148)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHCSSEEEEEEEEECSSSEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEEcCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 456888888888 67888999999887766655 44444455556899999999999999999999999988775
No 106
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=62.09 E-value=9.6 Score=32.21 Aligned_cols=39 Identities=3% Similarity=-0.002 Sum_probs=35.2
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++++++|++.|+.
T Consensus 31 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 71 (102)
T 1urr_A 31 SHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLEN 71 (102)
T ss_dssp HHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 78888876 7799999999999999999999999999974
No 107
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=61.73 E-value=25 Score=29.52 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=56.1
Q ss_pred eEEEEEEEE--eCchhHHHHHHHHHhccCceeeeEEeeecCCCc-E-E--EEEEe-cChHHHHHHHHHHhcCcceeeEee
Q 047033 99 RRHTISVFV--GDESGMINRIAGVFARRGYNIESLAVGLNKDKA-L-F--TIVVY-GTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 99 ~~h~IsvlV--eN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~-~--TIVv~-gde~~ieQI~kQLeKLvdVikV~d 171 (514)
..|++.+.. +++.-+...+...+.+.+|-+.+|...+.+ ++ . + ++... -+++.+++++.+|...-.|.+|.=
T Consensus 7 ~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~-~~~veI~A~L~at~~~~~~Le~iv~rLs~ep~V~~a~W 85 (94)
T 2lqj_A 7 QPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAG-DDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHW 85 (94)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECS-SSCEEEEEEEEEESCCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCC-CCeEEEEEEEEecCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 457766666 456778888999999999999999977755 44 3 4 34444 477899999999999999998863
No 108
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=61.63 E-value=17 Score=29.72 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=40.9
Q ss_pred EEEEEEeCcchHHH----HHHHHhhccCc-eeeeEeeeecCCCCeeEEEEEEeCC----hHHHHHHHHHH
Q 047033 346 TLSMLVNDSPGVLN----IVTGVFARRGY-NIQSLAVGHAETEGLSRITTVVPAT----DESISKLMQQL 406 (514)
Q Consensus 346 tLSIlVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~Te~~~iSRiTIVV~gd----e~~ieQI~kQL 406 (514)
...|.|..|||||+ .|.+...+.|| +++++.+|. ++++.++++ ++.++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK-------~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGK-------YMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEE-------EEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCchHHHHHHHHHHHHHh
Confidence 46788888999996 56678899999 699998875 488888775 24566666664
No 109
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=61.13 E-value=76 Score=27.78 Aligned_cols=76 Identities=5% Similarity=-0.074 Sum_probs=60.6
Q ss_pred cceeEEEEEEEeCc-chHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 341 GLRSHTLSMLVNDS-PGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 341 ~~~khtLSIlVeN~-pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
+-+--+|++..+++ .++-.+++.+.....=.|.|-.=-+- +.+..=.++++.|+.+.+..+..+|.++-.|..+.-
T Consensus 50 ~~~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 50 TQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHI-NHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp CEEEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CceEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEc-CCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 33456899999988 78888999999888777766433343 236677899999999999999999999999887764
No 110
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=60.70 E-value=7.1 Score=32.74 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcC--cEEEEecCCEEEEEEecCHHHHHHHHHHhccCC
Q 047033 439 ARRDVLDIATIFR--AKAVDVSDHTITLELTGDLDKMVALQRLLEPYG 484 (514)
Q Consensus 439 ~R~eI~~la~iFr--akIVDvs~~si~iE~TG~~~KIdafi~lL~pyG 484 (514)
-|.-+.++|+.++ +.|-...++++.+++-|+++++++|++.|+.-|
T Consensus 22 FR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g 69 (98)
T 1aps_A 22 FRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSKVG 69 (98)
T ss_dssp CTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSSCC
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhhcC
Confidence 3788999999764 678899999999999999999999999997433
No 111
>1q5y_A NIKR, nickel responsive regulator; nickel binding, regulatory domain, beta sandwich, metal binding protein; 1.40A {Escherichia coli} SCOP: d.58.18.4 PDB: 3bkt_A 3bkf_A 3bku_A
Probab=60.51 E-value=51 Score=26.86 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=55.1
Q ss_pred EEEEEEEEeCc-hhHHHHHHHHHhccCceeee-EEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEe
Q 047033 100 RHTISVFVGDE-SGMINRIAGVFARRGYNIES-LAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVE 170 (514)
Q Consensus 100 ~h~IsvlVeN~-pGVLsRIaglFsRRgyNIeS-LtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~ 170 (514)
--+|++..+++ .++-.|++.+.....=.|-| +.+-..++....+|++.|+.+.++.+..+|..+-.|..+.
T Consensus 5 ~Gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~Hvhld~~~clEvivv~G~~~~I~~l~~~l~~~kGV~~~~ 77 (85)
T 1q5y_A 5 FAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGH 77 (85)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHTGGGEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTCEEEE
T ss_pred EEEEEEEEeCCchhHHHHHHHHHHhccCeEEEEEeeeeCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEe
Confidence 34778888877 67888999999887665554 4444455555688999999999999999999997776654
No 112
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=60.26 E-value=13 Score=30.57 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=39.6
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-----hHHHHHHHHHH
Q 047033 101 HTISVFVGDESGMIN----RIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-----DKVLQQVMEQL 160 (514)
Q Consensus 101 h~IsvlVeN~pGVLs----RIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-----e~~ieQI~kQL 160 (514)
+...|.|..+||||. .|.+-+.+.||+++++.+| .++++.++++ ++.++.+.++|
T Consensus 3 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~~~~~a~~~v~~~~~~L 66 (85)
T 1gtd_A 3 FMVEVRIRLKKGMLNPEAATIERALALLGYEVEDTDTT-----DVITFTMDEDSLEAVEREVEDMCQRL 66 (85)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEE-----EEEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHHHHcCCChheEEEE-----EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 457788888999986 4556779999998888764 3578877765 24455666555
No 113
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=59.90 E-value=18 Score=32.50 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=56.7
Q ss_pred CchhHHHHHHHHHhccCceeeeEEeeecCCCc-E----EEEEEecChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 109 DESGMINRIAGVFARRGYNIESLAVGLNKDKA-L----FTIVVYGTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 109 N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~-~----~TIVv~gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
.-|++|..|..+=...|..++++..++....+ + ++|.+.|+=..+-+-...|++|--++.+.+++-
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~i 113 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFEI 113 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeEE
Confidence 34899999999999999999999988754443 2 889999999999999999999999988888853
No 114
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=59.85 E-value=8.3 Score=32.32 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhccCC
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSKFG 250 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~fG 250 (514)
.++|+.++ |.|-...+.++.+++.|+++.+++|++.|+.-|
T Consensus 27 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g 69 (98)
T 1aps_A 27 EDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSKVG 69 (98)
T ss_dssp HHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSSCC
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhhcC
Confidence 78888876 679999999999999999999999999997533
No 115
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=59.50 E-value=23 Score=29.51 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=41.5
Q ss_pred eEEEEEEEeCcchHHH----HHHHHhhccCc-eeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHH
Q 047033 344 SHTLSMLVNDSPGVLN----IVTGVFARRGY-NIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQL 406 (514)
Q Consensus 344 khtLSIlVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL 406 (514)
.+...|.|..|||||. .|.+...+.|| +++++.+|. ++++.+++++ +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK-------~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGK-------YLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEE-------EEEEEecCCCHHHHHHHHHHHHhhc
Confidence 4678899999999996 56678899999 799988875 4788877642 3344555554
No 116
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=59.14 E-value=9.9 Score=31.48 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=34.6
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.++|+.++ |.|-...+.++.+++.|+++++++|++.|+
T Consensus 24 ~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 63 (91)
T 1w2i_A 24 QREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH 63 (91)
T ss_dssp HHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 78888765 779999999999999999999999999997
No 117
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=58.61 E-value=10 Score=31.77 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~ 247 (514)
.++|+.++ |.|-...+.++.+++.|+++++++|++.|+
T Consensus 28 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~ 67 (99)
T 2vh7_A 28 QAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLE 67 (99)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHH
Confidence 88898876 679999999999999999999999999997
No 118
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=57.76 E-value=19 Score=29.45 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=37.8
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCceeeeEEeeecCCCcEEEEEEecC-hH----HHHHHHHHH
Q 047033 101 HTISVFVGDESGMIN----RIAGVFARRGYNIESLAVGLNKDKALFTIVVYGT-DK----VLQQVMEQL 160 (514)
Q Consensus 101 h~IsvlVeN~pGVLs----RIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gd-e~----~ieQI~kQL 160 (514)
+...|.|..+||||. .|.+-+.+.||+++++.+| .++++.+.++ ++ .++++. +|
T Consensus 4 ~~~~V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~g-----K~~~l~~~~~~~~~a~~~v~~~~-~L 66 (84)
T 2dgb_A 4 YQATLLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVG-----KVLEIVFPAENLLEAEEKAKAMG-AL 66 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEE-----EEEEEEEECSSHHHHHHHHHHHH-HH
T ss_pred eEEEEEEEECCCCcChHHHHHHHHHHHCCCChhhEEEE-----EEEEEEecCCCHHHHHHHHHHHH-HH
Confidence 457788888999986 4556789999998887764 3477777654 33 355555 44
No 119
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=57.59 E-value=23 Score=38.04 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=61.6
Q ss_pred eeEEEEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeC-C-hHHHHHHHHHHhcCccEEEEEecCC
Q 047033 343 RSHTLSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPA-T-DESISKLMQQLYKLIDLHEVRDLTH 420 (514)
Q Consensus 343 ~khtLSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~g-d-e~~ieQI~kQL~KLidVikV~dlt~ 420 (514)
+++.+++.+-++||-|.+++.++. +-||..+.-- ..+.+-..+.+.++- + .+.+++|++.|++-= .++.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYR-FADAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEE-CCCSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEee-ccCCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECCC
Confidence 368999999999999999999998 6899888775 335566677777763 3 689999999998753 35789998
Q ss_pred chhh
Q 047033 421 LPFA 424 (514)
Q Consensus 421 ~~~V 424 (514)
.+..
T Consensus 412 ~~~~ 415 (514)
T 1tdj_A 412 DEMA 415 (514)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7755
No 120
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=57.48 E-value=12 Score=31.80 Aligned_cols=39 Identities=5% Similarity=0.059 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 34 ~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~ 74 (101)
T 2bjd_A 34 QIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIKQ 74 (101)
T ss_dssp HHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHTT
T ss_pred HHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh
Confidence 88999876 6799999999999999999999999999973
No 121
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=55.68 E-value=12 Score=33.17 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=39.1
Q ss_pred cHHHHHHHHHhc--CcEEEEecCCEEEEEEecCHHHHHHHHHHhc
Q 047033 439 ARRDVLDIATIF--RAKAVDVSDHTITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 439 ~R~eI~~la~iF--rakIVDvs~~si~iE~TG~~~KIdafi~lL~ 481 (514)
-|.-+.++|+.+ .+.|-...++++.+++-|+++.|++|++.|+
T Consensus 49 FR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~ 93 (121)
T 2lxf_A 49 FRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH 93 (121)
T ss_dssp CHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 488999999987 4679999999999999999999999999996
No 122
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=55.47 E-value=21 Score=31.69 Aligned_cols=53 Identities=19% Similarity=0.426 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHhccC--ceeeeEEeeecC-CCcEEEEEEe-cChHHHHHHHHHHhcC
Q 047033 111 SGMINRIAGVFARRG--YNIESLAVGLNK-DKALFTIVVY-GTDKVLQQVMEQLQKL 163 (514)
Q Consensus 111 pGVLsRIaglFsRRg--yNIeSLtVg~Te-d~~~~TIVv~-gde~~ieQI~kQLeKL 163 (514)
.|+|+|+-.+.-..| |.|..+.||.+. +++.-.|.|. .|++.+++|+.+|..|
T Consensus 15 Sgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 15 SLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 589999998887655 899999999865 5566666666 4678899999999887
No 123
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=53.17 E-value=28 Score=31.16 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=57.1
Q ss_pred CcchHHHHHHHHhhccCceeeeEeeeecC-CCCeeE--EEEEEeCChHHHHHHHHHHhcCccEEEEEecC
Q 047033 353 DSPGVLNIVTGVFARRGYNIQSLAVGHAE-TEGLSR--ITTVVPATDESISKLMQQLYKLIDLHEVRDLT 419 (514)
Q Consensus 353 N~pGVL~RItgLFsRRGyNIeSLtVg~Te-~~~iSR--iTIVV~gde~~ieQI~kQL~KLidVikV~dlt 419 (514)
.-|++|..|..+=...|..++++..++.. .+.+.+ ++|.+.|+=..+-+-...|.+|..++.+.+++
T Consensus 43 em~~LL~~i~~~~~~~GL~l~~~~p~~~~~~~~y~e~Pv~i~v~G~Y~~l~~Fl~~l~~LpRiv~~~~~~ 112 (147)
T 2rjz_A 43 EVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFYIELPIQISVVGGYHDLATFVSGVSSLPRIVTLHDFE 112 (147)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECCCEECSSEEEEEEEEEEEECHHHHHHHHHHHHTSSSCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeecCccccCcEEEEeEEEEEEEeHHHHHHHHHHHHcCCcEEEEeeeE
Confidence 34899999999999999999999998753 344554 66777899999999999999999999998885
No 124
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=52.41 E-value=68 Score=28.10 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=57.8
Q ss_pred eEEEEEEEEeCc-hhHHHHHHHHHhccCceeee-EEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 99 RRHTISVFVGDE-SGMINRIAGVFARRGYNIES-LAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 99 ~~h~IsvlVeN~-pGVLsRIaglFsRRgyNIeS-LtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
.--+|++..+++ .++-.+++.+.....=.|-| +.+-..++....+|++.|+.+.+..+..+|..+-.|..+.-
T Consensus 52 ~~gvi~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 126 (133)
T 2hza_A 52 GFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHL 126 (133)
T ss_dssp EEEEEEEEEESSTTSHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHHSTTEEEEEE
T ss_pred eEEEEEEEecCCchhHHHHHHHHHHhccCeEEEEeeEEcCCCcEEEEEEEEcCHHHHHHHHHHHhccCCeEEEee
Confidence 456888888888 67888999999887766655 44444555556889999999999999999999988887764
No 125
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=51.75 E-value=1.2e+02 Score=26.53 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=60.0
Q ss_pred cceeEEEEEEEeCcc-hHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEEe
Q 047033 341 GLRSHTLSMLVNDSP-GVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVRD 417 (514)
Q Consensus 341 ~~~khtLSIlVeN~p-GVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~d 417 (514)
+-..-+|++..+++. ++-.+++.+.....=.|.|-.=-+- +.+..=.++++.|+.+.|..+..+|.++-.|..+.-
T Consensus 52 ~~~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl-~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 52 EEVAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHM-DEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp SEEEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEEC-SSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred CceEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEc-CCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 344568999998886 8888999999887766666333333 236677899999999999999999999999988764
No 126
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=50.77 E-value=36 Score=28.00 Aligned_cols=68 Identities=10% Similarity=0.292 Sum_probs=50.1
Q ss_pred eEEEEEEEEeCchh-HHHHHHHHHhccCceeeeEEeeecCCCcE--EEEEEe-cChHHHHHHHHHHhcCcceeeE
Q 047033 99 RRHTISVFVGDESG-MINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVY-GTDKVLQQVMEQLQKLVNVLKV 169 (514)
Q Consensus 99 ~~h~IsvlVeN~pG-VLsRIaglFsRRgyNIeSLtVg~Ted~~~--~TIVv~-gde~~ieQI~kQLeKLvdVikV 169 (514)
-.+.+.+...+.++ ....|..+| +|++.++. .-++....+ +|+.+. .+.+.++.+-+.|.+.-.|.-|
T Consensus 14 c~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~--~r~Ss~GkY~Svtv~i~a~s~eq~~~iY~~L~~~~~Vk~v 85 (86)
T 2h9z_A 14 CLWDYRVIMTTKDTSTLKELLETY-QRPFKLEF--KNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQT 85 (86)
T ss_dssp SEEEEEEEECCSCTHHHHHHSTTC-CSSEECCB--SCSSCCSSCEEEEEEEECCSHHHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEECCcHHHHHHHHHHH-hccCCCcc--cccCCCCeEEEEEEEEEECCHHHHHHHHHHHhcCCCEEEe
Confidence 57999999999999 999999999 77886542 112222222 666665 4577899999999988777654
No 127
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=49.07 E-value=30 Score=28.23 Aligned_cols=54 Identities=13% Similarity=0.423 Sum_probs=40.0
Q ss_pred EEEEEEeCchhHHH----HHHHHHhccCc-eeeeEEeeecCCCcEEEEEEecC----hHHHHHHHHHH
Q 047033 102 TISVFVGDESGMIN----RIAGVFARRGY-NIESLAVGLNKDKALFTIVVYGT----DKVLQQVMEQL 160 (514)
Q Consensus 102 ~IsvlVeN~pGVLs----RIaglFsRRgy-NIeSLtVg~Ted~~~~TIVv~gd----e~~ieQI~kQL 160 (514)
...|.|..+||||. .|.+.+.+.|| +++++.+| .++++.++++ +..++.+.++|
T Consensus 3 ~~~V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~g-----K~~~l~~~~~~~~a~~~v~~~~~~L 65 (84)
T 1t4a_A 3 KVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIG-----KYMELTIEKSDRDLDVLVKEMCEKL 65 (84)
T ss_dssp EEEEEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEE-----EEEEEEECCCSSCHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-----EEEEEEecCchHHHHHHHHHHHHHh
Confidence 46778888999985 56688899999 69988865 3477777765 25566777665
No 128
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=48.15 E-value=19 Score=29.31 Aligned_cols=54 Identities=17% Similarity=0.394 Sum_probs=37.0
Q ss_pred EEEEEEeCcchHHH----HHHHHhhccCc-eeeeEeeeecCCCCeeEEEEEEeCCh-----HHHHHHHHHH
Q 047033 346 TLSMLVNDSPGVLN----IVTGVFARRGY-NIQSLAVGHAETEGLSRITTVVPATD-----ESISKLMQQL 406 (514)
Q Consensus 346 tLSIlVeN~pGVL~----RItgLFsRRGy-NIeSLtVg~Te~~~iSRiTIVV~gde-----~~ieQI~kQL 406 (514)
...|.|..+||||+ .|.+-..+.|| +++++.+| .++++.+++++ +.++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-------k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-------KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-------EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46788888999996 45667779999 68876665 45888888652 3455555554
No 129
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=46.84 E-value=39 Score=28.11 Aligned_cols=56 Identities=11% Similarity=0.256 Sum_probs=40.3
Q ss_pred EEEEEEEEeCchhHHH----HHHHHHhccCc-eeeeEEeeecCCCcEEEEEEecC-h----HHHHHHHHHH
Q 047033 100 RHTISVFVGDESGMIN----RIAGVFARRGY-NIESLAVGLNKDKALFTIVVYGT-D----KVLQQVMEQL 160 (514)
Q Consensus 100 ~h~IsvlVeN~pGVLs----RIaglFsRRgy-NIeSLtVg~Ted~~~~TIVv~gd-e----~~ieQI~kQL 160 (514)
.+...|.|..+||||. .|.+.+.+.|| +++++.+| .++++.++++ + +.++.+.++|
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~g-----K~~~l~~~~~~~~~a~~~v~~~~~~L 70 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAG-----KYLVFRVNSSSQQEATELVKKLADEM 70 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEE-----EEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEE-----EEEEEEecCCCHHHHHHHHHHHHhhc
Confidence 4668889999999996 56678899999 69888764 3477777654 2 3455555554
No 130
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=45.93 E-value=15 Score=31.85 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=27.3
Q ss_pred cCcEEEEec-CCEEEEEEecCHHHHHHHHHHhccCCcEEEeecceeEeec
Q 047033 450 FRAKAVDVS-DHTITLELTGDLDKMVALQRLLEPYGICEVARTGRVALVR 498 (514)
Q Consensus 450 FrakIVDvs-~~si~iE~TG~~~KIdafi~lL~pyGIlEvaRTG~vAl~R 498 (514)
..+++.+.+ +--++||+..+++|+++|++.|+++= ..|.|.+.+
T Consensus 63 h~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v-----~~Glvt~e~ 107 (114)
T 1o51_A 63 HRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID-----FDGLVFTAD 107 (114)
T ss_dssp ---------CCCEEEEEEEECHHHHHHHHHHHHTCC-----CCSEEEEEE
T ss_pred EccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEE
Confidence 345666666 45799999999999999999998752 236665543
No 131
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=45.72 E-value=60 Score=27.49 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=41.7
Q ss_pred EEEEEEEeCcchHHH----HHHHHhhccCce-eeeEeeeecCCCCeeEEEEEEeCC-----hHHHHHHHHHH
Q 047033 345 HTLSMLVNDSPGVLN----IVTGVFARRGYN-IQSLAVGHAETEGLSRITTVVPAT-----DESISKLMQQL 406 (514)
Q Consensus 345 htLSIlVeN~pGVL~----RItgLFsRRGyN-IeSLtVg~Te~~~iSRiTIVV~gd-----e~~ieQI~kQL 406 (514)
+...|.|..+||||+ .|.+-..+.||+ ++++.+|. ++.+.++++ ++.++++.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK-------~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGK-------SIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEE-------EEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeee-------EEEEEecCCCHHHHHHHHHHHHHHH
Confidence 456788888999996 578889999996 99998875 477777764 34455666555
No 132
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=45.44 E-value=16 Score=32.32 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=35.3
Q ss_pred HHHHHhcC--CEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 210 RWLVDIFR--AKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 210 ~~l~~~F~--akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.++|+.++ |.|-...+.++.+++.|+++.|++|++.|+.
T Consensus 54 ~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~~ 94 (121)
T 2lxf_A 54 KKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLHK 94 (121)
T ss_dssp HHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHHh
Confidence 88999875 6799999999999999999999999999973
No 133
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=45.34 E-value=34 Score=28.86 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=35.0
Q ss_pred hhHHHHHHhcCCEEEEecCC--------EEEEEEeCChhHHHHHHHHhccC
Q 047033 207 LQIRWLVDIFRAKIVDISEY--------SLTIEVTGDPGKMVAVQRNLSKF 249 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~~--------s~~iEvTG~~~kIdafi~~L~~f 249 (514)
..|.+|-+..+|+| +|.++ .-+|.++|+++.+++..+++...
T Consensus 27 ~~Ik~I~~~TGa~I-~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 27 ENVKAINQQTGAFV-EISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEK 76 (107)
T ss_dssp CHHHHHHHHSSSEE-EECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEE-EEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 36799999999995 77765 37899999999999988888764
No 134
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=43.09 E-value=1.2e+02 Score=26.53 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=57.6
Q ss_pred eEEEEEEEEeCch-hHHHHHHHHHhccCceeee-EEeeecCCCcEEEEEEecChHHHHHHHHHHhcCcceeeEee
Q 047033 99 RRHTISVFVGDES-GMINRIAGVFARRGYNIES-LAVGLNKDKALFTIVVYGTDKVLQQVMEQLQKLVNVLKVED 171 (514)
Q Consensus 99 ~~h~IsvlVeN~p-GVLsRIaglFsRRgyNIeS-LtVg~Ted~~~~TIVv~gde~~ieQI~kQLeKLvdVikV~d 171 (514)
..-+|++..+++. ++-.+++.+.....=.|-| +.+-..++....+|++.|+.+.+..+..+|..+-.|..+.-
T Consensus 54 ~~GvI~ivydh~~~~l~~~l~~iqh~~~d~I~s~~hvhl~~~~clevivv~G~~~~I~~l~~~l~~~~GV~~~~l 128 (138)
T 2bj7_A 54 VAGTITIVYNHDEGDVVKALLDLQHEYLDEIISSLHVHMDEHNCLEVIVVKGEAKKIKMIADKLLSLKGVKHGKL 128 (138)
T ss_dssp EEEEEEEEEETTSTTHHHHHHHHHHHTTTTEEEEEEEECSSSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred eEEEEEEEecCcchhHHHHHHHHHHhccCeEEEEeeEEcCCCCEEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 4568888888876 7888999998877666554 44444555556889999999999999999999988887764
No 135
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=42.68 E-value=37 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=33.6
Q ss_pred hhHHHHHHhcCCEEEEecC-----CEEEEEEeCChhHHHHHHHHhcc
Q 047033 207 LQIRWLVDIFRAKIVDISE-----YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~-----~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
..|.+|-+..+|+| ++.+ +.-++.++|+++.++...+++..
T Consensus 25 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 25 AKINEIRQMSGAQI-KIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCEE-EEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 36789999999994 6766 46789999999999988877654
No 136
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=40.46 E-value=31 Score=36.14 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=56.1
Q ss_pred eEEEEEEEe-----CcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCCh-------HHHHHHHHHHhcCcc
Q 047033 344 SHTLSMLVN-----DSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATD-------ESISKLMQQLYKLID 411 (514)
Q Consensus 344 khtLSIlVe-----N~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde-------~~ieQI~kQL~KLid 411 (514)
+....+.++ +.||.+.||-..|++.|+||+-++-+ + ..|+++++.++ ..++++.++|+++-+
T Consensus 306 ~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~----~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~ 379 (449)
T 2j0w_A 306 RNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E----VSVALTLDTTGSTSTGDTLLTQSLLMELSALCR 379 (449)
T ss_dssp EEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T----TEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSC
T ss_pred CCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C----CeEEEEEeccccchhhHHHHHHHHHHHhccCCe
Confidence 455556664 56899999999999999999999954 2 46999998643 257888888886322
Q ss_pred EEEEEecCCchhhheeeEEEEEecC
Q 047033 412 LHEVRDLTHLPFAERELMLIKVAVN 436 (514)
Q Consensus 412 VikV~dlt~~~~V~REL~LIKV~~~ 436 (514)
+ .+++.+++|-|--.
T Consensus 380 -v---------~~~~~~a~vsvVG~ 394 (449)
T 2j0w_A 380 -V---------EVEEGLALVALIGN 394 (449)
T ss_dssp -E---------EEEEEEEEEEEEES
T ss_pred -E---------EEeCCeEEEEEECC
Confidence 1 22467888888654
No 137
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.13 E-value=45 Score=28.07 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH--------TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~--------si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+ |++.++ .-+|.++|+++.++...++++.
T Consensus 27 ~~Ik~I~~~TGa~-I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~ 75 (107)
T 2hh2_A 27 ENVKAINQQTGAF-VEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEE 75 (107)
T ss_dssp CHHHHHHHHSSSE-EEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCE-EEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHH
Confidence 4688899999999 577765 3789999999999988887765
No 138
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=40.02 E-value=1.6e+02 Score=25.41 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=34.5
Q ss_pred chhhHHHHHHhcCCEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 047033 205 VHLQIRWLVDIFRAKIVDISEY-----SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 205 ~~~~i~~l~~~F~akVVDvs~~-----s~~iEvTG~~~kIdafi~~L~~ 248 (514)
....|.+|-+.++|+| ++.++ .-+|.++|+++.++...+++..
T Consensus 109 ~G~~I~~i~~~tg~~I-~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 156 (164)
T 2jvz_A 109 SGEMIKKIQNDAGVRI-QFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 156 (164)
T ss_dssp SSHHHHHHHHHTCCEE-EECCCCTTSSEEEEEEESCHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHCCeE-EEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHH
Confidence 3446899999999996 56653 6789999999999988887754
No 139
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=39.46 E-value=62 Score=34.74 Aligned_cols=112 Identities=18% Similarity=0.271 Sum_probs=77.5
Q ss_pred eEEEEEEEEeCchhHHHHHHHHHhccCceeeeEEeeecCCC--cEEEEEEe--cChHHHHHHHHHHhcCcceeeEeecCC
Q 047033 99 RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDK--ALFTIVVY--GTDKVLQQVMEQLQKLVNVLKVEDLSN 174 (514)
Q Consensus 99 ~~h~IsvlVeN~pGVLsRIaglFsRRgyNIeSLtVg~Ted~--~~~TIVv~--gde~~ieQI~kQLeKLvdVikV~dlt~ 174 (514)
+++.+.+.+-++||-|.+++.++. +-||..+.---+ +. ..+.+.++ +..+.+++|++.|++-= ..+.|+++
T Consensus 337 r~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~l~~~g--~~~~~~~~ 411 (514)
T 1tdj_A 337 REALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA-DAKNACIFVGVRLSRGLEERKEILQMLNDGG--YSVVDLSD 411 (514)
T ss_dssp CEEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC-CSSBCEEEEEEECSSTHHHHHHHHHHHTSSS--CEEETTSS
T ss_pred CcccccccCCCCCchHHHHHHHhC--CCceEEEEeecc-CCCeEEEEEEEEeCCcHHHHHHHHHHHHhCC--CCeEECCC
Confidence 468999999999999999999998 689988776532 22 23555555 33688999999998753 46788888
Q ss_pred hhhHH---hheeeEEEecCcccccc-ccccccccchhhHHHHHHhcCCEEEEecCCEEEEEEeCChhHHHHHHHHhcc
Q 047033 175 EPQVE---RELMLIKVNADPKFRAE-IFLFPCLGVHLQIRWLVDIFRAKIVDISEYSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 175 ~~~V~---REL~LiKV~~~~~~r~E-I~~~~~~~~~~~i~~l~~~F~akVVDvs~~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
.+... |=| .+ .|+. + -.+.-+-+|.--.|+-+-.|++.|.+
T Consensus 412 ~~~~~~h~~~~------~g--~~~~~~-------------------------~~e~~~~~~fpe~~gal~~fl~~~~~ 456 (514)
T 1tdj_A 412 DEMAKLHVRYM------VG--GRPSHP-------------------------LQERLYSFEFPESPGALLRFLNTLGT 456 (514)
T ss_dssp CHHHHHTGGGT------CC--CCCSSC-------------------------CCCEEEEEECCCCTTHHHHHHHHHCS
T ss_pred CHHHHHHHHHh------hC--CcCccC-------------------------CCceEEEEeCCCCCCHHHHHHHhcCC
Confidence 76442 211 01 1111 1 02344678888888888888888874
No 140
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=39.18 E-value=23 Score=30.77 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=28.3
Q ss_pred cCCEEEEecC-CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecc
Q 047033 216 FRAKIVDISE-YSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 265 (514)
Q Consensus 216 F~akVVDvs~-~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~R~ 265 (514)
..+++.+.++ --++||+..+++|+++|+..|+++= ..|.+.+..-
T Consensus 63 h~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v-----~~Glvt~e~V 108 (114)
T 1o51_A 63 HRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID-----FDGLVFTADV 108 (114)
T ss_dssp ---------CCCEEEEEEEECHHHHHHHHHHHHTCC-----CCSEEEEEEE
T ss_pred EccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEEE
Confidence 4456667674 5799999999999999999999752 2476666543
No 141
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=37.77 E-value=62 Score=25.60 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=34.6
Q ss_pred hhhHHHHHHhcCCEEEEecCC-----EEEEEEeCChhHHHHHHHHhccC
Q 047033 206 HLQIRWLVDIFRAKIVDISEY-----SLTIEVTGDPGKMVAVQRNLSKF 249 (514)
Q Consensus 206 ~~~i~~l~~~F~akVVDvs~~-----s~~iEvTG~~~kIdafi~~L~~f 249 (514)
...|.+|-+..+|+| ++.+. .-+|.++|+++.++...+++..+
T Consensus 25 G~~Ik~I~~~sga~I-~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 25 GANINEIRQMSGAQI-KIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp GHHHHHHHHHHCCEE-EECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhCCEE-EEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 336789999999994 67663 67899999999999888877653
No 142
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=37.49 E-value=23 Score=31.35 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=22.9
Q ss_pred hcCcEEEEecC-CEEEEEEecCHHHHHHHHHHhccC
Q 047033 449 IFRAKAVDVSD-HTITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 449 iFrakIVDvs~-~si~iE~TG~~~KIdafi~lL~py 483 (514)
++.+++.+.+. --++||+..+++|+++|+..|+++
T Consensus 58 ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~l 93 (127)
T 2dcl_A 58 VHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPM 93 (127)
T ss_dssp ----------CCCEEEEEEEEEHHHHHHHHHHHTTT
T ss_pred EecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 34566777774 469999999999999999999986
No 143
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=37.20 E-value=65 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=33.5
Q ss_pred hhHHHHHHhcCCEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 047033 207 LQIRWLVDIFRAKIVDISEY--------SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~~--------s~~iEvTG~~~kIdafi~~L~~ 248 (514)
..|.+|-+..+|+| ++.++ .-++.++|+++.+....+++..
T Consensus 23 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 36789999999996 67764 4789999999999988887754
No 144
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=37.20 E-value=38 Score=35.43 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=45.6
Q ss_pred eEEEEEEEEe-----CchhHHHHHHHHHhccCceeeeEEeeecCCCcEEEEEEecCh-------HHHHHHHHHHhc
Q 047033 99 RRHTISVFVG-----DESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVYGTD-------KVLQQVMEQLQK 162 (514)
Q Consensus 99 ~~h~IsvlVe-----N~pGVLsRIaglFsRRgyNIeSLtVg~Ted~~~~TIVv~gde-------~~ieQI~kQLeK 162 (514)
++....+.++ ++||.+.||-+.|++.|+||+-++-+ + .-++++++.++ ..++++.++|++
T Consensus 305 ~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss--~--~sis~~v~~~~~~~~~~~~~~~~~~~el~~ 376 (449)
T 2j0w_A 305 RRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS--E--VSVALTLDTTGSTSTGDTLLTQSLLMELSA 376 (449)
T ss_dssp EEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE--T--TEEEEEECCCCCSSTTCCSSCHHHHHHHHH
T ss_pred eCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC--C--CeEEEEEeccccchhhHHHHHHHHHHHhcc
Confidence 4556666665 56899999999999999999999853 2 34778877532 357888888886
No 145
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=36.02 E-value=1e+02 Score=26.04 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=40.5
Q ss_pred EEEEEEEeCchhHHH----HHHHHHhccCce-eeeEEeeecCCCcEEEEEEecC-----hHHHHHHHHHH
Q 047033 101 HTISVFVGDESGMIN----RIAGVFARRGYN-IESLAVGLNKDKALFTIVVYGT-----DKVLQQVMEQL 160 (514)
Q Consensus 101 h~IsvlVeN~pGVLs----RIaglFsRRgyN-IeSLtVg~Ted~~~~TIVv~gd-----e~~ieQI~kQL 160 (514)
+...|.|..+||||. -|.+-+.+.||+ ++++.+| .++.+.++++ ++.++.+.++|
T Consensus 16 ~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~G-----K~~el~~~~~~~~~a~~~v~~mc~kL 80 (94)
T 1vq3_A 16 FKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLG-----KSIHLEVEAENKEKAYEIVKKACEEL 80 (94)
T ss_dssp EEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEE-----EEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeee-----eEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 345778888999985 578889999996 8888764 2477777764 45566666666
No 146
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=35.72 E-value=69 Score=25.38 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=33.4
Q ss_pred hhhHHHHHHhcCCEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 047033 206 HLQIRWLVDIFRAKIVDISEY-----SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 206 ~~~i~~l~~~F~akVVDvs~~-----s~~iEvTG~~~kIdafi~~L~~ 248 (514)
...|.+|-+..+|+ +++.++ .-+|.++|+++.++...+++..
T Consensus 26 G~~Ik~I~~~tga~-I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 26 GQRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp GHHHHHHHHHHCCE-EEECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCE-EEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 34689999999999 467653 4689999999999988777654
No 147
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=35.60 E-value=56 Score=26.62 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=33.2
Q ss_pred hhHHHHHHhcCCEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 047033 207 LQIRWLVDIFRAKIVDISEY-----SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~~-----s~~iEvTG~~~kIdafi~~L~~ 248 (514)
..|.+|-+..+|+ +++.++ .-+|.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 35 EQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp HHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 3678999999999 577765 3688999999999888777765
No 148
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=35.53 E-value=42 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=33.1
Q ss_pred hhhHHHHHHhcCCEEEEecCCE---EEEEEeCChhHHHHHHHHhc
Q 047033 206 HLQIRWLVDIFRAKIVDISEYS---LTIEVTGDPGKMVAVQRNLS 247 (514)
Q Consensus 206 ~~~i~~l~~~F~akVVDvs~~s---~~iEvTG~~~kIdafi~~L~ 247 (514)
...|.+|-+..+|+ +++.++. -++.++|+++.+....+++.
T Consensus 24 G~~Ik~I~~~tga~-I~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 24 GESVKKMREESGAR-INISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp GHHHHHHHHHHCCE-EEECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCE-EEEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 34689999999999 4788774 37999999999988777654
No 149
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=34.03 E-value=62 Score=26.15 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=33.6
Q ss_pred hhhHHHHHHhcCCEEEEecCC-----EEEEEEeCChhHHHHHHHHhcc
Q 047033 206 HLQIRWLVDIFRAKIVDISEY-----SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 206 ~~~i~~l~~~F~akVVDvs~~-----s~~iEvTG~~~kIdafi~~L~~ 248 (514)
...|.+|-+..+|+ +++.+. .-+|.++|+++.++...+++..
T Consensus 33 G~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 33 GQRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp GHHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 33678999999998 577763 5789999999999887777654
No 150
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=33.64 E-value=56 Score=25.40 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=40.9
Q ss_pred eeeEEEecCccccccccccccccchhhHHHHHHhcCCEEEEecCCE---EEEEEeCChhHHHHHHHHhcc
Q 047033 182 LMLIKVNADPKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISEYS---LTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 182 L~LiKV~~~~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~~s---~~iEvTG~~~kIdafi~~L~~ 248 (514)
+.-..+..+++....|+ =.....|.+|.+.++++ +++.++. =.|.++|.++.+++..+.+..
T Consensus 4 ~~~~~i~I~~~~ig~iI----G~gG~~I~~I~e~tg~~-I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLI----GKSGANINRIKDQYKVS-VRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp CEEEEEEECSSHHHHHT----CSSCCHHHHHHHHTCCE-EECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEEECHHHhhhhc----CCCCccHHHHHHHHCCE-EEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 33444444544433330 12334689999999999 5777664 267889999999888877654
No 151
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=33.55 E-value=73 Score=27.41 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHhcCccEEEEEecCCchhhheeeEEEEEecCc---ccHHH-HHHHHHhcCcEEEEecCCEEEEEE
Q 047033 395 TDESISKLMQQLYKLIDLHEVRDLTHLPFAERELMLIKVAVNT---TARRD-VLDIATIFRAKAVDVSDHTITLEL 466 (514)
Q Consensus 395 de~~ieQI~kQL~KLidVikV~dlt~~~~V~REL~LIKV~~~~---~~R~e-I~~la~iFrakIVDvs~~si~iE~ 466 (514)
++..+++|-.+|++ ||| |||++.. .++.+ ..+||+.-+|.+|++-..++++=-
T Consensus 29 Te~vi~ei~~aL~~-----------------hEL--IKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~~VLYR 85 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------REL--IKVHVLQNNFDDKKELAETLSEATRSELVQVIGSMIVIYR 85 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SSE--EEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHH-----------------CCc--EEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCEEEEEe
Confidence 57778888888766 775 5555433 33433 556889999999999988888743
No 152
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.50 E-value=1.3e+02 Score=25.15 Aligned_cols=58 Identities=19% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEE
Q 047033 357 VLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEV 415 (514)
Q Consensus 357 VL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV 415 (514)
++++++.-|. -.+||-.=.+....+..+-+|++-+.|+++.+++.++.|++.---++|
T Consensus 37 iIs~l~~~~~-v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 94 (106)
T 3dhx_A 37 LLSETARRFN-VNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEV 94 (106)
T ss_dssp HHHHHHHHSC-CEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHC-CCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 6666665553 337777777777777889999999999999999999999887433333
No 153
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=33.37 E-value=91 Score=24.20 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCcEEEEecC-----CEEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSD-----HTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~-----~si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+ |++.+ +.-++.++|+++.++...+++..
T Consensus 25 ~~Ik~I~~~tga~-I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 70 (76)
T 2p2r_A 25 AKINEIRQMSGAQ-IKIANPVEGSTDRQVTITGSAASISLAQYLINV 70 (76)
T ss_dssp HHHHHHHHHHCCE-EEECCCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCE-EEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999999 57766 36789999999999988877653
No 154
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=33.10 E-value=88 Score=24.99 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=33.6
Q ss_pred hhHHHHHHhcCCEEEEecCC--------EEEEEEeCChhHHHHHHHHhcc
Q 047033 207 LQIRWLVDIFRAKIVDISEY--------SLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~~--------s~~iEvTG~~~kIdafi~~L~~ 248 (514)
..|.+|-+..+|+| ++.++ .-+|.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 36789999999996 67764 4789999999999888877654
No 155
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=32.62 E-value=36 Score=27.67 Aligned_cols=54 Identities=17% Similarity=0.408 Sum_probs=36.1
Q ss_pred EEEEEEeCchhHHH----HHHHHHhccCc-eeeeEEeeecCCCcEEEEEEecCh-----HHHHHHHHHH
Q 047033 102 TISVFVGDESGMIN----RIAGVFARRGY-NIESLAVGLNKDKALFTIVVYGTD-----KVLQQVMEQL 160 (514)
Q Consensus 102 ~IsvlVeN~pGVLs----RIaglFsRRgy-NIeSLtVg~Ted~~~~TIVv~gde-----~~ieQI~kQL 160 (514)
...|.|..+||||. .|.+-+.+.|| +++++.+| .++++.+++++ ..++.+.++|
T Consensus 3 ~~~V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~g-----k~~~l~~~~~~~~~a~~~v~~~~~~L 66 (83)
T 2yx5_A 3 KATVIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTY-----KMIDIIMEGENEEKVKEEVEEMCKKL 66 (83)
T ss_dssp EEEEEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCC-----EEEEEEEC-CCHHHHHHHHHHHHHHT
T ss_pred EEEEEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEE-----EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46778888999986 55677779999 57766542 35888777652 3455555555
No 156
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=31.62 E-value=35 Score=29.94 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=34.8
Q ss_pred cchhhHHHHHHhcCCEEEEecCCE-------EEEEEeCChhHHHHHHHHhcc
Q 047033 204 GVHLQIRWLVDIFRAKIVDISEYS-------LTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 204 ~~~~~i~~l~~~F~akVVDvs~~s-------~~iEvTG~~~kIdafi~~L~~ 248 (514)
.....|.+|-+.++|+| ++.++. .+|.++|+++.+++..+++..
T Consensus 102 kgG~~I~~i~~~tga~I-~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 102 KGGKTVNELQNLTAAEV-VVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp GGGHHHHHHHHHHCCEE-ECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhCCeE-EECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 33446899999999997 687664 389999999999988777653
No 157
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=30.99 E-value=1e+02 Score=24.27 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEecCHHHHHHHHHHhccC
Q 047033 441 RDVLDIATIFRAKAVDVSDH-----TITLELTGDLDKMVALQRLLEPY 483 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~-----si~iE~TG~~~KIdafi~lL~py 483 (514)
..|.+|-+..+|+ |++.+. .-++.++|+++.++...+++...
T Consensus 26 ~~Ik~I~~~sga~-I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 72 (82)
T 1wvn_A 26 ANINEIRQMSGAQ-IKIANPVEGSSGRQVTITGSAASISLAQYLINAR 72 (82)
T ss_dssp HHHHHHHHHHCCE-EEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCE-EEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Confidence 4688899999999 567663 66899999999999888877653
No 158
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=30.42 E-value=1.1e+02 Score=24.27 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH-----TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~-----si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+ |++.++ .-++.++|+++.++...++++.
T Consensus 27 ~~Ik~I~~~tga~-I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 72 (82)
T 1zzk_A 27 QRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 72 (82)
T ss_dssp HHHHHHHHHHCCE-EEECCTTSCSSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCE-EEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHH
Confidence 5788999999999 567653 3678999999999988877653
No 159
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=29.85 E-value=63 Score=27.35 Aligned_cols=42 Identities=10% Similarity=0.159 Sum_probs=33.1
Q ss_pred hhhHHHHHHhcCCEEEEecCCE-----EEEEEeCChhHHHHHHHHhcc
Q 047033 206 HLQIRWLVDIFRAKIVDISEYS-----LTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 206 ~~~i~~l~~~F~akVVDvs~~s-----~~iEvTG~~~kIdafi~~L~~ 248 (514)
...|.+|-+.++|+ ++|.++. -+|.++|+++.+++..+++..
T Consensus 30 G~~Ik~I~~~TGak-I~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 30 GEMIKKIQNDAGVR-IQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp THHHHHHHHHHTCE-EEECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCcE-EEEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 33678999999998 4565432 478999999999998888765
No 160
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=29.81 E-value=2.9e+02 Score=24.32 Aligned_cols=129 Identities=13% Similarity=0.158 Sum_probs=73.6
Q ss_pred EEEEEEEeCcchHHHHHHHHhhccCceeee--------EeeeecCCCCeeEEEEEEeCChHHHHHHHHHHhcCccEEEEE
Q 047033 345 HTLSMLVNDSPGVLNIVTGVFARRGYNIQS--------LAVGHAETEGLSRITTVVPATDESISKLMQQLYKLIDLHEVR 416 (514)
Q Consensus 345 htLSIlVeN~pGVL~RItgLFsRRGyNIeS--------LtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~KLidVikV~ 416 (514)
+++.++|.+ +.+..+.-+.|-||.. +.+.+.+...-.| ++.+.|+.+.+++..+.+.+++.-..-.
T Consensus 3 ~~~~~~vp~-----~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r-~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 3 HMIDVPIPR-----FAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPER-IAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp EEEEEEEEH-----HHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEE-EEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECh-----hheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCcc-EEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 456666665 3677777788877743 4454322222223 3466788888888766666554321100
Q ss_pred e-----------------cCCchhhheeeEEEEEecCccc--------HHHHHHHHHhcCcEEEEecCC--------EEE
Q 047033 417 D-----------------LTHLPFAERELMLIKVAVNTTA--------RRDVLDIATIFRAKAVDVSDH--------TIT 463 (514)
Q Consensus 417 d-----------------lt~~~~V~REL~LIKV~~~~~~--------R~eI~~la~iFrakIVDvs~~--------si~ 463 (514)
. +...+. ....-+++.++... -..|.+|.+.++|+| ++.++ .=+
T Consensus 77 ~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~ 153 (174)
T 1j4w_A 77 NPGGPGPGGRGRGRGQGNWNMGPP--GGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARI-ELQRNPPPNADPNMKL 153 (174)
T ss_dssp -----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE-EEECCCTTTSCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCccccCCC--CCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEE-EECCCCCCCCCCCceE
Confidence 0 000000 01122333334332 246788999999985 56543 368
Q ss_pred EEEecCHHHHHHHHHHhcc
Q 047033 464 LELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 464 iE~TG~~~KIdafi~lL~p 482 (514)
+.++|+++.++...++++.
T Consensus 154 v~I~G~~~~v~~A~~~I~~ 172 (174)
T 1j4w_A 154 FTIRGTPQQIDYARQLIEE 172 (174)
T ss_dssp EEEECCHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 9999999999988887753
No 161
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=29.38 E-value=1.1e+02 Score=24.81 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH-----TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~-----si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|.+..+|+ |++.++ .-++.++|+++.++...++++.
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~ 80 (92)
T 1x4n_A 35 EQISRIQQESGCK-IQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 80 (92)
T ss_dssp HHHHHHHHHSCCE-EEECSCCTTCSEEEEEEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCE-EEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999998 677765 3688999999999887777654
No 162
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=29.31 E-value=94 Score=26.33 Aligned_cols=52 Identities=29% Similarity=0.320 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEecC---ccccccccccccccchhhHHHHHHhcCCEEEEecC
Q 047033 149 TDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNAD---PKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE 225 (514)
Q Consensus 149 de~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~~~---~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~ 225 (514)
++..++++-.+|++ ||| |||++. .+.+.++ ...|++.-+|.+|.+-.
T Consensus 30 T~~vi~ei~~aL~~-----------------~EL--IKVkvl~~~~~~~~e~-----------a~~la~~t~a~~Vq~IG 79 (98)
T 1jo0_A 30 TEGVLAEIENALNH-----------------HEL--IKVKVAGADRETKQLI-----------INAIVRETKAAQVQTIG 79 (98)
T ss_dssp CHHHHHHHHHHHHH-----------------HSE--EEEEETTCCHHHHHHH-----------HHHHHHHHCCEEEEEET
T ss_pred CHHHHHHHHHHHHH-----------------CCe--EEEEEeCCCHHHHHHH-----------HHHHHHHhCCEEEEEEC
Confidence 35556666666554 665 555553 2455555 37899999999999988
Q ss_pred CEEEE
Q 047033 226 YSLTI 230 (514)
Q Consensus 226 ~s~~i 230 (514)
..+++
T Consensus 80 ~~~vL 84 (98)
T 1jo0_A 80 HILVL 84 (98)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 88776
No 163
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=29.22 E-value=36 Score=30.10 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=28.5
Q ss_pred cCCEEEEecC-CEEEEEEeCChhHHHHHHHHhccCCcEEEeeccceeeecc
Q 047033 216 FRAKIVDISE-YSLTIEVTGDPGKMVAVQRNLSKFGIREIARTGKIALRRE 265 (514)
Q Consensus 216 F~akVVDvs~-~s~~iEvTG~~~kIdafi~~L~~fGIlEvaRTG~iAl~R~ 265 (514)
+.+++.+.++ --++||+..+++||++|+..|+++= ..|.+.+..-
T Consensus 59 h~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv-----~~GlVt~e~V 104 (127)
T 2dcl_A 59 HSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMI-----KDGMITVEPT 104 (127)
T ss_dssp ---------CCCEEEEEEEEEHHHHHHHHHHHTTTC-----SSSEEEEEEC
T ss_pred ecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh-----CCCEEEEEEE
Confidence 5566777774 4699999999999999999999862 2566666554
No 164
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=28.93 E-value=1.2e+02 Score=23.32 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH--------TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~--------si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~ 71 (76)
T 1dtj_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (76)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEE-EECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 46788999999995 78764 4788999999999988887654
No 165
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=28.37 E-value=84 Score=27.04 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHhcCcceeeEeecCChhhHHhheeeEEEecC---ccccccccccccccchhhHHHHHHhcCCEEEEecC
Q 047033 149 TDKVLQQVMEQLQKLVNVLKVEDLSNEPQVERELMLIKVNAD---PKFRAEIFLFPCLGVHLQIRWLVDIFRAKIVDISE 225 (514)
Q Consensus 149 de~~ieQI~kQLeKLvdVikV~dlt~~~~V~REL~LiKV~~~---~~~r~EI~~~~~~~~~~~i~~l~~~F~akVVDvs~ 225 (514)
++..++++-.+|++ ||| |||++. .+.+.++ ..+|++.-+|.+|.+-.
T Consensus 29 Te~vi~ei~~aL~~-----------------hEL--IKVkvl~~~~~d~~e~-----------a~~la~~t~a~vVq~IG 78 (104)
T 1rq8_A 29 NENMIKQIDDTLEN-----------------REL--IKVHVLQNNFDDKKEL-----------AETLSEATRSELVQVIG 78 (104)
T ss_dssp CHHHHHHHHHHHHH-----------------SSE--EEEEECCCCHHHHHHH-----------HHHHHHHHTEEEEEEET
T ss_pred CHHHHHHHHHHHHH-----------------CCc--EEEEEeCCCHHHHHHH-----------HHHHHHHhCCEEEEEEC
Confidence 45566666666655 665 555542 3455555 37899999999999998
Q ss_pred CEEEEEE
Q 047033 226 YSLTIEV 232 (514)
Q Consensus 226 ~s~~iEv 232 (514)
..+++=-
T Consensus 79 ~~~VLYR 85 (104)
T 1rq8_A 79 SMIVIYR 85 (104)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 8877643
No 166
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=27.24 E-value=13 Score=33.92 Aligned_cols=58 Identities=26% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEEEEeCcchHHHHHHHHhhccCceeeeEeeeecCCCCeeEEEEEEeCChHHHHHHHHHHh
Q 047033 347 LSMLVNDSPGVLNIVTGVFARRGYNIQSLAVGHAETEGLSRITTVVPATDESISKLMQQLY 407 (514)
Q Consensus 347 LSIlVeN~pGVL~RItgLFsRRGyNIeSLtVg~Te~~~iSRiTIVV~gde~~ieQI~kQL~ 407 (514)
+.+.+.+.+|.|.+++.++.+.|.++-++...+.++ +..++++-+.+ ..+..+++.|+
T Consensus 141 l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~~-~~~~v~~~v~~--~~~~~i~~~le 198 (213)
T 1vr9_A 141 FSVLLEDKPGELRKVVDALALSNINILSVITTRSGD-GKREVLIKVDA--VDEGTLIKLFE 198 (213)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecCC-CEEEEEEEEcc--CCHHHHHHHHH
Confidence 445566899999999999999999998876554444 55666666664 35677777775
No 167
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=26.92 E-value=1.1e+02 Score=24.64 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCcEEEEecCC-----EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH-----TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~-----si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+ |++.+. .-++.++|+++.++...++++.
T Consensus 34 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~ 79 (89)
T 1j5k_A 34 QRIKQIRHESGAS-IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 79 (89)
T ss_dssp HHHHHHHHHTCCE-EEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCe-EEecCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Confidence 4688899999998 577763 5789999999999887777653
No 168
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=25.25 E-value=1.6e+02 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCcEEEEecCC--------EEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDH--------TITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~--------si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+..+|+| ++.++ .-++.++|+++.++...+++..
T Consensus 23 ~~Ik~I~~~tga~I-~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~ 71 (87)
T 1ec6_A 23 KTLVEYQELTGARI-QISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQ 71 (87)
T ss_dssp HHHHHHHHHHCCEE-EECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCEE-EEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHH
Confidence 46788999999995 78764 4789999999999888877654
No 169
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=25.12 E-value=1e+02 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=33.7
Q ss_pred hhHHHHHHhcCCEEEEecC-------CEEEEEEeCChhHHHHHHHHhcc
Q 047033 207 LQIRWLVDIFRAKIVDISE-------YSLTIEVTGDPGKMVAVQRNLSK 248 (514)
Q Consensus 207 ~~i~~l~~~F~akVVDvs~-------~s~~iEvTG~~~kIdafi~~L~~ 248 (514)
..|.+|-+.++|+ ++|.+ +.-+|.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 35 ETIRSICKASGAK-ITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp HHHHHHHHHHCCE-EEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCE-EEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 3679999999999 47876 46789999999999888777654
No 170
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=25.11 E-value=1.1e+02 Score=23.65 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCcEEEEecCCE---EEEEEecCHHHHHHHHHHhc
Q 047033 441 RDVLDIATIFRAKAVDVSDHT---ITLELTGDLDKMVALQRLLE 481 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~s---i~iE~TG~~~KIdafi~lL~ 481 (514)
..|.+|-+..+|+ +++.++. -++.++|+++.++...+++.
T Consensus 25 ~~Ik~I~~~tga~-I~i~~~~~~er~v~I~G~~~~v~~A~~~I~ 67 (73)
T 2axy_A 25 ESVKKMREESGAR-INISEGNCPERIITLAGPTNAIFKAFAMII 67 (73)
T ss_dssp HHHHHHHHHHCCE-EEECSSCCSEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCE-EEEecCCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 4688899999999 5887764 37899999999988777654
No 171
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=24.87 E-value=1.3e+02 Score=23.32 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=38.6
Q ss_pred eeEEEEEecCcccHH--------HHHHHHHhcCcEEEEecCCE---EEEEEecCHHHHHHHHHHhcc
Q 047033 427 ELMLIKVAVNTTARR--------DVLDIATIFRAKAVDVSDHT---ITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 427 EL~LIKV~~~~~~R~--------eI~~la~iFrakIVDvs~~s---i~iE~TG~~~KIdafi~lL~p 482 (514)
++.-..+..++.... .|.+|.+.++++ +++.++. =.+.++|+++.+++..++++.
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~-I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~ 68 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVS-VRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCE-EECCCCCSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCE-EEECCCCCcccEEEEEcCHHHHHHHHHHHHH
Confidence 344455555554322 477899999999 5777654 267788999999988887754
No 172
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=23.81 E-value=1.3e+02 Score=25.38 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCcEEEEecCCE-----EEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSDHT-----ITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~~s-----i~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+.++|+ |++.++. -++.++|+++.++...++++.
T Consensus 31 ~~Ik~I~~~TGak-I~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ 76 (106)
T 2hh3_A 31 EMIKKIQNDAGVR-IQFKQDDGTGPEKIAHIMGPPDRCEHAARIIND 76 (106)
T ss_dssp HHHHHHHHHHTCE-EEECSSCSSSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcE-EEEecCCCCCceeEEEEEeCHHHHHHHHHHHHH
Confidence 4688899999998 5665432 478999999999988888764
No 173
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=20.27 E-value=1.4e+02 Score=24.71 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCcEEEEecC-------CEEEEEEecCHHHHHHHHHHhcc
Q 047033 441 RDVLDIATIFRAKAVDVSD-------HTITLELTGDLDKMVALQRLLEP 482 (514)
Q Consensus 441 ~eI~~la~iFrakIVDvs~-------~si~iE~TG~~~KIdafi~lL~p 482 (514)
..|.+|-+.++|+ |++.+ +.=++.++|+++.++...+++..
T Consensus 35 ~~Ik~I~~~tga~-I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~ 82 (104)
T 1we8_A 35 ETIRSICKASGAK-ITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILE 82 (104)
T ss_dssp HHHHHHHHHHCCE-EEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCE-EEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHH
Confidence 4678899999999 57876 46789999999999887777654
Done!