BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047035
(783 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 192 bits (488), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 202/625 (32%), Positives = 290/625 (46%), Gaps = 79/625 (12%)
Query: 176 TNLEVLDLSANRISG---SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
+L LDLS N +SG +LT L LK L + +N L+ + G +L +L LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 233 ENNLEGQ--LPWCLSDLIG-LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
N++ G + W LSD G LK L IS N +SG++ ++ +LE+L +S NNF P
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
L + S L+ L +S N +L + F + C + K L
Sbjct: 218 F--LGDCSALQHL--DISGN-KLSGD-----FSRAI---STCT------------ELKLL 252
Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG-ILQLPKVKHDLLRHLDISNNNLTGM 408
++SSN+ VG P +++ L+ L L+ N F+G I D L LD+S N+ G
Sbjct: 253 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
+P G +S NNF G +P ++ +M+ L +LDLS N+FSG+L + A
Sbjct: 310 VPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQ-----LRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
SL LD+S NNF G I P NL Q L+ LYL+NN FTGKI L N LV L +
Sbjct: 369 SLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
S N LSG IP +G+ S L L + N LEG IP ++ + L+
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE---------------- 469
Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
L L N L+G+IPS L T L + L +N+ G IP I L +L L
Sbjct: 470 -------TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN--GDLYGSGLYIYF 700
N G IP L + L LDL+ N NG+IP+ +F + G + Y+Y
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYI 578
Query: 701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN---YMSGID 757
+ G+ + L+ + + +T Y + + M +D
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 758 LSYNELTGEIPSEIGELPKVRALNL 782
+SYN L+G IP EIG +P + LNL
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNL 663
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 181/579 (31%), Positives = 257/579 (44%), Gaps = 87/579 (15%)
Query: 175 LTNLEVLDLSANRISGS------LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228
L +LEVLDLSAN ISG+ L++ LK L + N ++G V+ + NL
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVD---VSRCVNLEF 204
Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
LD+ NN +P+ L D L+ LDIS N LSG+ I+ T L+ L +S N F G
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF------QLKVLQLP-NCNLKVIPSFLL 341
P L + L+ S K IP F L L L N +P F
Sbjct: 264 P--------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL---LRHL 398
+ L LSSN G P + L+VL LS N FSG +LP+ +L L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTL 373
Query: 399 DISNNNLTG-MLP---QNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
D+S+NN +G +LP QN +Q+L + N F G IP ++ EL L LS N
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELY---LQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
SG + +S+ + L L + N G I M + L L L N TG+I +GL N
Sbjct: 431 SGTI-PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
L + +SNN L+G IP WIG L +L +S N GNIP ++ + R L LDL+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 575 LFGSIASSL----------NLSSIMHLYLQNNALS------------------------- 599
G+I +++ ++ ++Y++N+ +
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 600 ------------GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
G T + ++ LD+ N G IP +I + L +L L N +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWRE 686
G IP + L+ L ILDLS NKL+G IP + E
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 47/293 (16%)
Query: 165 SGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
SG LG+L+ L L L N + G + EL + L+ L + N L G + S G+
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNC 489
Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
NL + L N L G++P + L L +L +S N SGN+P+ + + SL +L L+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW---------------IPTFQLKVLQL 328
F G P ++ + + + +K + I + QL L
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 329 PN-CNL--KVIPSFLLHQYD----FKFLDLSSNKLVGNFPTW-----------LMQNNTK 370
N CN+ +V +D FLD+S N L G P L N+
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 371 ------------LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
L +L LS+N G + +L +D+SNNNL+G +P+
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 163 ISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGIC 221
+ G T N ++ LD+S N +SG + E+ L +L + +N ++GS+ + +
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VG 677
Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
+L+ L LDL N L+G++P +S L L +D+S N+LSG +P +
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 202/625 (32%), Positives = 290/625 (46%), Gaps = 79/625 (12%)
Query: 176 TNLEVLDLSANRISG---SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
+L LDLS N +SG +LT L LK L + +N L+ + G +L +L LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 233 ENNLEGQ--LPWCLSDLIG-LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
N++ G + W LSD G LK L IS N +SG++ ++ +LE+L +S NNF P
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 214
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349
L + S L+ L +S N +L + F + C + K L
Sbjct: 215 F--LGDCSALQHL--DISGN-KLSGD-----FSRAI---STCT------------ELKLL 249
Query: 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG-ILQLPKVKHDLLRHLDISNNNLTGM 408
++SSN+ VG P +++ L+ L L+ N F+G I D L LD+S N+ G
Sbjct: 250 NISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 409 LPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
+P G +S NNF G +P ++ +M+ L +LDLS N+FSG+L + A
Sbjct: 307 VPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQ-----LRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
SL LD+S NNF G I P NL Q L+ LYL+NN FTGKI L N LV L +
Sbjct: 366 SLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
S N LSG IP +G+ S L L + N LEG IP ++ + L+ L
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL-------------- 468
Query: 583 LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642
L N L+G+IPS L T L + L +N+ G IP I L +L L
Sbjct: 469 ---------ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Query: 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGN--GDLYGSGLYIYF 700
N G IP L + L LDL+ N NG+IP+ +F + G + Y+Y
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA----MFKQSGKIAANFIAGKRYVYI 575
Query: 701 QLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLN---YMSGID 757
+ G+ + L+ + + +T Y + + M +D
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 758 LSYNELTGEIPSEIGELPKVRALNL 782
+SYN L+G IP EIG +P + LNL
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNL 660
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 181/579 (31%), Positives = 257/579 (44%), Gaps = 87/579 (15%)
Query: 175 LTNLEVLDLSANRISGS------LTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228
L +LEVLDLSAN ISG+ L++ LK L + N ++G V+ + NL
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGC--GELKHLAISGNKISGDVD---VSRCVNLEF 201
Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
LD+ NN +P+ L D L+ LDIS N LSG+ I+ T L+ L +S N F G
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTF------QLKVLQLP-NCNLKVIPSFLL 341
P L + L+ S K IP F L L L N +P F
Sbjct: 261 P--------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL---LRHL 398
+ L LSSN G P + L+VL LS N FSG +LP+ +L L L
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSASLLTL 370
Query: 399 DISNNNLTG-MLP---QNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKF 454
D+S+NN +G +LP QN +Q+L + N F G IP ++ EL L LS N
Sbjct: 371 DLSSNNFSGPILPNLCQNPKNTLQELY---LQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514
SG + +S+ + L L + N G I M + L L L N TG+I +GL N
Sbjct: 428 SGTI-PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574
L + +SNN L+G IP WIG L +L +S N GNIP ++ + R L LDL+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 575 LFGSIASSL----------NLSSIMHLYLQNNALS------------------------- 599
G+I +++ ++ ++Y++N+ +
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 600 ------------GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647
G T + ++ LD+ N G IP +I + L +L L N +
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWRE 686
G IP + L+ L ILDLS NKL+G IP + E
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 47/293 (16%)
Query: 165 SGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
SG LG+L+ L L L N + G + EL + L+ L + N L G + S G+
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS-GLSNC 486
Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
NL + L N L G++P + L L +L +S N SGN+P+ + + SL +L L+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 284 FQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW---------------IPTFQLKVLQL 328
F G P ++ + + + +K + I + QL L
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 606
Query: 329 PN-CNL--KVIPSFLLHQYD----FKFLDLSSNKLVGNFPTW-----------LMQNNTK 370
N CN+ +V +D FLD+S N L G P L N+
Sbjct: 607 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 666
Query: 371 ------------LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
L +L LS+N G + +L +D+SNNNL+G +P+
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 163 ISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGIC 221
+ G T N ++ LD+S N +SG + E+ L +L + +N ++GS+ + +
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VG 674
Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSV 267
+L+ L LDL N L+G++P +S L L +D+S N+LSG +P +
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 99/215 (46%), Gaps = 8/215 (3%)
Query: 467 ASLEYLDV----SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDI 522
A+L YL+ NN G I P LTQL +LY+ + + +G I L LV LD
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL-QLLDLSENRLFGSIAS 581
S N LSG +P I + L + N + G IP +F +L + +S NRL G I
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 582 SLNLSSIMHLYLQNNALSGQIPSTLFRSTE-LLTLDLRDNKFFGRIPDQINNHSELRVLL 640
+ ++ + L N L G S LF S + + L N + ++ L L
Sbjct: 193 TFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLD 250
Query: 641 LRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675
LR N + G +P L QL+ L L++S N L G IP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 111/243 (45%), Gaps = 30/243 (12%)
Query: 531 IPCWIGNFSYLDVLLMSK-NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN-LSSI 588
IP + N YL+ L + N+L G IP I QL L ++ + G+I L+ + ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 589 MHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSEL-RVLLLRGNYLQ 647
+ L NALSG +P ++ L+ + N+ G IPD + S+L + + N L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 648 GQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGD-LYGSGLYIYFQLGGLH 706
G+IP L L +DLS N L G ++LF + N ++ + + F LG
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGD-----ASVLFGSDKNTQKIHLAKNSLAFDLG--- 238
Query: 707 SIGTYYN-STLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLSYNELTG 765
+G N + LDL Y TLPQ + L ++ +++S+N L G
Sbjct: 239 KVGLSKNLNGLDLR-NNRIYGTLPQGL---------------TQLKFLHSLNVSFNNLCG 282
Query: 766 EIP 768
EIP
Sbjct: 283 EIP 285
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 111/249 (44%), Gaps = 32/249 (12%)
Query: 188 ISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247
I SL L P+ N +G NNL+ G + I +L L L + N+ G +P LS +
Sbjct: 68 IPSSLANL-PYLNFLYIGGINNLV-GPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307
L LD S+N LSG LP I++L +L + N G P S + + L ++
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMT 180
Query: 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQN 367
+ T PTF N NL F+DLS N L G+ + L +
Sbjct: 181 ISRNRLTGKIPPTFA-------NLNL-------------AFVDLSRNMLEGDA-SVLFGS 219
Query: 368 NTKLEVLRLSNNSFSGILQLPKVK-HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDIS 426
+ + + L+ NS + L KV L LD+ NN + G LPQ + ++ L +++S
Sbjct: 220 DKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVS 276
Query: 427 KNNFEGNIP 435
NN G IP
Sbjct: 277 FNNLCGEIP 285
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 109/291 (37%), Gaps = 67/291 (23%)
Query: 229 LDLGENNLEGQ--LPWCLSDLIGLKVLDIS-FNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
LDL NL +P L++L L L I N+L G +P IA LT L YL ++ N
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD 345
G IP FL
Sbjct: 115 G------------------------------------------------AIPDFLSQIKT 126
Query: 346 FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVK---HDLLRHLDISN 402
LD S N L G P + + L + N SG +P L + IS
Sbjct: 127 LVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISR 183
Query: 403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 462
N LTG +P + L ++D+S+N EG+ G K + L++N + DL
Sbjct: 184 NRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN---NHFTGKIKAG 510
+ + +L LD+ N YG + LTQL++L+ N N+ G+I G
Sbjct: 242 LSK--NLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 94/226 (41%), Gaps = 38/226 (16%)
Query: 579 IASSL-NLSSIMHLYLQN-NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSEL 636
I SSL NL + LY+ N L G IP + + T+L L + G IPD ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 637 RVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYG--S 694
L N L G +P ++ L L + N+++G+IP D YG S
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--------------DSYGSFS 173
Query: 695 GLYIYFQLGGLHSIG----TYYN---STLDL---WLFGDDYITLPQRARVQFV--TKNRY 742
L+ + G T+ N + +DL L GD + Q + KN
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 743 EFYNG-----SNLNYMSGIDLSYNELTGEIPSEIGELPKVRALNLS 783
F G NLN G+DL N + G +P + +L + +LN+S
Sbjct: 234 AFDLGKVGLSKNLN---GLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 165 SGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICEL 223
SGA L + L LD S N +SG+L ++ NL + N ++G++
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 224 KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
K T + + N L G++P ++L L +D+S N L G+ + + + + + L+ N+
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 284 F 284
Sbjct: 233 L 233
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 166 GATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKN 225
G + G+ N + + L+ N ++ L ++ +NL L +RNN + G++ +G+ +LK
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKF 269
Query: 226 LTELDLGENNLEGQLP 241
L L++ NNL G++P
Sbjct: 270 LHSLNVSFNNLCGEIP 285
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 106/405 (26%), Positives = 173/405 (42%), Gaps = 76/405 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
NLTNLE LDLS+N+I S T+L + +L + +L ++ E++ L
Sbjct: 169 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 227
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
+L L NN + + C+ L GL+V + GNL + NLT E+
Sbjct: 228 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
LA D G L + LTN S+ ++ + + + +++ F + L+L NC
Sbjct: 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 341
Query: 335 VIPSFLLHQYD--------------------FKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
P+ L +FLDLS N L +F Q++ L
Sbjct: 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTISL 399
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
+ + SF+G++ + + + L HLD ++NL M ++ + ++ L+Y+DIS
Sbjct: 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
N+F+ N +P E++ L LDLS+ + LS T+ +
Sbjct: 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 518
Query: 468 SLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
SL+ L++S NNF+ FP Y L L+ L NH K L
Sbjct: 519 SLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL 562
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 11/228 (4%)
Query: 166 GATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVE-SKGI 220
G +L +LE LDLS N +S S ++ +LK L + NG + S
Sbjct: 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLS---FNGVITMSSNF 416
Query: 221 CELKNLTELDLGENNLEGQLPWCLS-DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
L+ L LD +NL+ + + L L LDIS H + L+SLE L +
Sbjct: 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476
Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
+ N+FQ F + T NL L L +L + L+VL + + N + +F
Sbjct: 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 536
Query: 340 LLHQYD-FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ 386
+ + LD S N ++ + L + L L L+ N F+ +
Sbjct: 537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
L+VLDLS I G+ L+ +L L + N + S+ L +L +L E
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 133
Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
NL + + L LK L+++ N + S LP +NLT+LE+L LS N Q + L
Sbjct: 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
Query: 293 LTNH 296
H
Sbjct: 194 RVLH 197
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 125/487 (25%), Positives = 197/487 (40%), Gaps = 62/487 (12%)
Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
LDL N L + L+VLD+S + +L+ L L L+ N Q
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 115
Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY---- 344
L + S+L+ L+ V +NL EN+ P LK L+ N +I SF L +Y
Sbjct: 116 ALGAFSGLSSLQKLV-AVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172
Query: 345 -DFKFLDLSSNKLVGNFPTWL--MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
+ + LDLSSNK+ + T L + L + + + +Q K L L +
Sbjct: 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232
Query: 402 NN----NLTGMLPQNM-GIVIQKLMYIDI---------SKNNFEGNIPYSIGEMKELFL- 446
NN N+ Q + G+ + +L+ + K+ EG +I E + +L
Sbjct: 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292
Query: 447 --LDLSRNKFS--GDLSATSVIRCASLEYLDVSENNFYGHI---------FPTYMNLTQL 493
LD + F+ ++S+ S++ D S N + H+ FPT + L L
Sbjct: 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSL 351
Query: 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF-----SYLD-----V 543
+ L +N G ++ L LD+S N LS C +F YLD V
Sbjct: 352 KRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV 409
Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLS-SIMHLYLQNNALSGQI 602
+ MS N L G ++ +F+ L +SE +F S+ + + L S H + N + +
Sbjct: 410 ITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468
Query: 603 PSTLFRSTELLTLDLRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661
S L L + N F +PD L L L L+ P A L L
Sbjct: 469 SS-------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Query: 662 ILDLSHN 668
+L++SHN
Sbjct: 522 VLNMSHN 528
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 147/370 (39%), Gaps = 84/370 (22%)
Query: 173 GNLTNLEVLDLSANRISGSLTELAPFRNL---KVLGMRNNLLNGSVESKGICELKNLTEL 229
+ +LE L+L+ N +S E F NL + LG+R+N L + L NLT+L
Sbjct: 53 ASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
D+ EN + L + DL LK L++ N L + L SLE L L N P
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168
Query: 290 LSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL----------PN--------- 330
L++ L VL L+ + ++ ++ ++LKVL++ PN
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228
Query: 331 -----CNLKVIPSFLL-HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI 384
CNL +P + H +FL+LS N P ++ + E+LRL G
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYN------PISTIEGSMLHELLRLQEIQLVGG 282
Query: 385 LQLPKVKH------DLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
QL V+ + LR L++S N LT + E ++ +S+
Sbjct: 283 -QLAVVEPYAFRGLNYLRVLNVSGNQLTTL----------------------EESVFHSV 319
Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIR-------------CASLEYLDVSE-NNFYGHIF 484
G ++ L L N + D V R CA+ E++ E +F +
Sbjct: 320 GNLETLI---LDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLL 376
Query: 485 PTYMNLTQLR 494
P Y + R
Sbjct: 377 PNYFTCRRAR 386
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 105/405 (25%), Positives = 172/405 (42%), Gaps = 76/405 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
NLTNLE LDLS+N+I S T+L + +L + +L ++ E++ L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
+L L NN + + C+ L GL+V + GNL + NLT E+
Sbjct: 204 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
LA D L + LTN S+ ++ + + + +++ F + L+L NC
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 317
Query: 335 VIPSFLLHQYD--------------------FKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
P+ L +FLDLS N L +F Q++ L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSL 375
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
+ + SF+G++ + + + L HLD ++NL M ++ + ++ L+Y+DIS
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
N+F+ N +P E++ L LDLS+ + LS T+ +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 494
Query: 468 SLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKNNHFTGKIKAGL 511
SL+ L++S NNF+ FP Y L L+ L NH K L
Sbjct: 495 SLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL 538
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 11/224 (4%)
Query: 166 GATRLGLGNLTNLEVLDLSANRIS--GSLTELAPF--RNLKVLGMRNNLLNGSVE-SKGI 220
G +L +LE LDLS N +S G ++ + F +LK L + NG + S
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLS---FNGVITMSSNF 392
Query: 221 CELKNLTELDLGENNLEGQLPWCLS-DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
L+ L LD +NL+ + + L L LDIS H + L+SLE L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
+ N+FQ F + T NL L L +L + L+VL + + N + +F
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 340 LLHQYD-FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS 382
+ + LD S N ++ + L + L L L+ N F+
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
L+VLDLS I G+ L+ +L L + N + S+ L +L +L E
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109
Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
NL + + L LK L+++ N + S LP +NLT+LE+L LS N Q + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 293 LTNH 296
H
Sbjct: 170 RVLH 173
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 125/487 (25%), Positives = 197/487 (40%), Gaps = 62/487 (12%)
Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
LDL N L + L+VLD+S + +L+ L L L+ N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91
Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY---- 344
L + S+L+ L+ V +NL EN+ P LK L+ N +I SF L +Y
Sbjct: 92 ALGAFSGLSSLQKLV-AVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 345 -DFKFLDLSSNKLVGNFPTWL--MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
+ + LDLSSNK+ + T L + L + + + +Q K L L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 402 NN----NLTGMLPQNM-GIVIQKLMYIDI---------SKNNFEGNIPYSIGEMKELFL- 446
NN N+ Q + G+ + +L+ + K+ EG +I E + +L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 447 --LDLSRNKFS--GDLSATSVIRCASLEYLDVSENNFYGHI---------FPTYMNLTQL 493
LD + F+ ++S+ S++ D S N + H+ FPT + L L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSL 327
Query: 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF-----SYLD-----V 543
+ L +N G ++ L LD+S N LS C +F YLD V
Sbjct: 328 KRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385
Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLS-SIMHLYLQNNALSGQI 602
+ MS N L G ++ +F+ L +SE +F S+ + + L S H + N + +
Sbjct: 386 ITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 603 PSTLFRSTELLTLDLRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661
S L L + N F +PD L L L L+ P A L L
Sbjct: 445 SS-------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 662 ILDLSHN 668
+L++SHN
Sbjct: 498 VLNMSHN 504
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 180 VLDLSANRISGSLTELAPFR--NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLE 237
+LDLS N +S E P R NL L + +N LN + S+ + NL LDL N+L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLH 101
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
+ SDL L+VL + NH+ + ++ L+ L LS N FP+ L+ + +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGN 160
Query: 298 NL-EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340
L +++LL +SSN K+ +LP +L+ +P+++
Sbjct: 161 KLPKLMLLDLSSN--------------KLKKLPLTDLQKLPAWV 190
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 472 LDVSENNF---YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS 528
LD+S NN PT LT L L L +NH + L LD+S+N L
Sbjct: 44 LDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR---QLQLLDLSENRL 575
+ L+VLL+ NH+ + V N F QLQ L LS+N++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 145/334 (43%), Gaps = 53/334 (15%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
+LTN L L L LK I + L + LDL
Sbjct: 215 ILTN---------------------------LDELSLNGNQLKDIGT-LASLTNLTDLDL 246
Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
++N++ P + TKL L+L N S I L + L +L+++ N L + P
Sbjct: 247 ANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 301
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
+ ++ L Y+ + NN P S+ +++ LF S NK S D+S S+ ++
Sbjct: 302 SN---LKNLTYLTLYFNNISDISPVSSLTKLQRLF---FSNNKVS-DVS--SLANLTNIN 352
Query: 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
+L N + P NLT++ L L + +T
Sbjct: 353 WLSAGHNQI-SDLTP-LANLTRITQLGLNDQAWT 384
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK--VKHDLLRHLDISNNNLT 406
L LSSN L +F Q++ L+ + SF+G++ + + + L HLD ++NL
Sbjct: 57 LSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
Query: 407 GMLPQNMGIVIQKLMYIDISK------------------------NNFEGN-IPYSIGEM 441
M ++ + ++ L+Y+DIS N+F+ N +P E+
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174
Query: 442 KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG-HIFPTYMNLTQLRWLYLKN 500
+ L LDLS+ + LS T+ +SL+ L++S NNF+ FP Y L L+ L
Sbjct: 175 RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSL 232
Query: 501 NHFTGKIKAGL 511
NH K L
Sbjct: 233 NHIMTSKKQEL 243
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 24/245 (9%)
Query: 162 GISSGATRLGL-------------GNLTNLEVLDLSANRIS--GSLTELAPF--RNLKVL 204
GI S ATRL L LT L L LS+N +S G ++ + F +LK L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYL 83
Query: 205 GMRNNLLNGSVE-SKGICELKNLTELDLGENNLEGQLPWCLS-DLIGLKVLDISFNHLSG 262
+ NG + S L+ L LD +NL+ + + L L LDIS H
Sbjct: 84 DLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140
Query: 263 NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQ 322
+ L+SLE L ++ N+FQ F + T NL L L +L +
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 323 LKVLQLPNCNLKVIPSFLLHQYD-FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
L+VL + + N + +F + + LD S N ++ + L + L L L+ N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Query: 382 SGILQ 386
+ +
Sbjct: 261 ACTCE 265
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L+
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTN 295
+LTN
Sbjct: 215 ILTN 218
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 214
Query: 292 LLTN 295
+LTN
Sbjct: 215 ILTN 218
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 167/394 (42%), Gaps = 74/394 (18%)
Query: 172 LGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGS---VESKGICELKNLT 227
NLTNLE LDLS+N+I S T+L + +L + +L ++ E++ L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LH 203
Query: 228 ELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHL--SGNLPSV-------IANLTSLEY 276
+L L NN + + C+ L GL+V + GNL + NLT E+
Sbjct: 204 KLTL-RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 277 -LALSDNNFQGEFPL-SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK 334
LA D L + LTN S+ ++ + + + +++ F + L+L NC
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-----RVKDFSYNFGWQHLELVNCKFG 317
Query: 335 VIPSFLLHQY--------------------DFKFLDLSSNKLVGNFPTWLMQNNTKLEVL 374
P+ L +FLDLS N L +F Q++ L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSL 375
Query: 375 RLSNNSFSGILQLPK--VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK----- 427
+ + SF+G++ + + + L HLD ++NL M ++ + ++ L+Y+DIS
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 428 -------------------NNFEGN-IPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467
N+F+ N +P E++ L LDLS+ + LS T+ +
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 494
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501
SL+ L+++ N + LT L+ ++L N
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%)
Query: 200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNH 259
+L+VL M N + EL+NLT LDL + LE P + L L+VL+++ N
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Query: 260 LSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
L + LTSL+ + L N + P
Sbjct: 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 10/178 (5%)
Query: 166 GATRLGLGNLTNLEVLDLSANRIS--GSLTELAPF--RNLKVLGMRNNLLNGSVE-SKGI 220
G +L +LE LDLS N +S G ++ + F +LK L + NG + S
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLS---FNGVITMSSNF 392
Query: 221 CELKNLTELDLGENNLEGQLPWCLS-DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
L+ L LD +NL+ + + L L LDIS H + L+SLE L +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452
Query: 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIP 337
+ N+FQ F + T NL L L +L + L+VL + + LK +P
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 122/487 (25%), Positives = 192/487 (39%), Gaps = 66/487 (13%)
Query: 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEF 288
LDL N L + L+VLD+S + +L+ L L L+ N Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L 91
Query: 289 PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY---- 344
L + S+L+ L+ V +NL EN+ P LK L+ N +I SF L +Y
Sbjct: 92 ALGAFSGLSSLQKLV-AVETNLA-SLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 345 -DFKFLDLSSNKLVGNFPTWL--MQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
+ + LDLSSNK+ + T L + L + + + +Q K L L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 402 NN----NLTGMLPQNM-GIVIQKLMYID---------ISKNNFEGNIPYSIGEMKELFL- 446
NN N+ Q + G+ + +L+ + K+ EG +I E + +L
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 447 --LDLSRNKFS--GDLSATSVIRCASLEYLDVSENNFYGHI---------FPTYMNLTQL 493
LD + F+ ++S+ S++ D S N + H+ FPT + L L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-LKLKSL 327
Query: 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG 553
+ L +N G ++ L LD+S N LS C +F
Sbjct: 328 KRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT------------- 372
Query: 554 NIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTE-L 612
L+ LDLS N + ++ L L + HL Q++ L ++F S L
Sbjct: 373 ---------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 613 LTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ-IPIALCQLQKLGILDLSHNKLN 671
+ LD+ N S L VL + GN Q +P +L+ L LDLS +L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 672 GSIPSCF 678
P+ F
Sbjct: 484 QLSPTAF 490
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
L+VLDLS I G+ L+ +L L + N + S+ L +L +L E
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109
Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
NL + + L LK L+++ N + S LP +NLT+LE+L LS N Q + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 293 LTNH 296
H
Sbjct: 170 RVLH 173
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 13/132 (9%)
Query: 167 ATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
A+ G+ LTNLE L+L+ N+I T+++P NL L NL G+ + I L+NL
Sbjct: 57 ASIQGIEYLTNLEYLNLNGNQI----TDISPLSNLVKL---TNLYIGTNKITDISALQNL 109
Query: 227 T---ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN 283
T EL L E+N+ P L++L L++ NH +L S ++N T L YL ++++
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTVTESK 166
Query: 284 FQGEFPLSLLTN 295
+ P++ LT+
Sbjct: 167 VKDVTPIANLTD 178
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 15/186 (8%)
Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
A + LD+ N + LT+LR LYL +N + AG+ L L +++N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95
Query: 526 LLSGHIPCWIGNFSYL---DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582
L +P IG F L L + +N L+ P ++ +L L L N L S+
Sbjct: 96 KLQA-LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKG 151
Query: 583 L--NLSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKFFGRIPD-QINNHSELRV 638
+ L+S+ L L NN L ++P F + TEL TL L DN R+P+ ++ +L++
Sbjct: 152 VFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKL-DNNQLKRVPEGAFDSLEKLKM 209
Query: 639 LLLRGN 644
L L+ N
Sbjct: 210 LQLQEN 215
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 6/183 (3%)
Query: 251 KVLDISFNHLSGNLPS-VIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309
K LD+ N LS +LPS LT L L L+DN Q P + NLE L + +
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNN 368
L + L L+L LK +P + +L L N+L + P +
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKL 156
Query: 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428
T L+ LRL NN + + K L+ L + NN L +P+ ++KL + + +N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Query: 429 NFE 431
++
Sbjct: 216 PWD 218
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 147/334 (44%), Gaps = 54/334 (16%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L+
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
G N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 159 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
+LTN L L L LK I + L + LDL
Sbjct: 214 ILTN---------------------------LDELSLNGNQLKDIGT-LASLTNLTDLDL 245
Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
++N++ P + TKL L+L N S I L + L +L+++ N L + P
Sbjct: 246 ANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 300
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
+ ++ L Y+ + NN P S+ +++ LF S NK S D+S S+ ++
Sbjct: 301 SN---LKNLTYLTLYFNNISDISPVSSLTKLQRLF---FSNNKVS-DVS--SLANLTNIN 351
Query: 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
+L N + P NLT++ L L + +T
Sbjct: 352 WLSAGHNQI-SDLTP-LANLTRITQLGLNDQAWT 383
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 42/305 (13%)
Query: 171 GLGNLTNLEVLDLSANRISGSLTEL--APFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228
G+ + +L+ L L+AN L ++ A F +L+ L ++ N+ + ++ + +L+NL +
Sbjct: 295 GIEGMNSLKKLVLNANSFD-QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Query: 229 LDLGENNLEGQLPWC---LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
LDL +++E C L +L L+ L++S+N G LE L ++ +
Sbjct: 354 LDLSHSDIEAS-DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH 412
Query: 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ-Y 344
+ P HS + NL L L+VL L +C L LL
Sbjct: 413 VKAP------HSPFQ--------NLHL----------LRVLNLSHCLLDTSNQHLLAGLQ 448
Query: 345 DFKFLDLSSNKLVGN--FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDI 400
D + L+L N T L+Q LE+L LS+ + I Q + H L + HLD+
Sbjct: 449 DLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQ--QAFHGLRNVNHLDL 506
Query: 401 SNNNLTGMLPQNMGIVIQ-KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459
S+N+LTG +M + K +Y++++ NN P+ + + + +++LS N S
Sbjct: 507 SHNSLTG---DSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCS 563
Query: 460 ATSVI 464
I
Sbjct: 564 NIHFI 568
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 174 NLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232
NL NLE L L +N IS +L E P +NLKVL +NN ++ + K L+ T L L
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIH-YISRKDTNSLEQATNLSLN 184
Query: 233 EN 234
N
Sbjct: 185 FN 186
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L+
Sbjct: 103 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF 158
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
G N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 159 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 213
Query: 292 LLTN 295
+LTN
Sbjct: 214 ILTN 217
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 54/334 (16%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L
Sbjct: 107 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 162
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
G N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 163 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 217
Query: 292 LLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL 351
+LTN L L L LK I + L + LDL
Sbjct: 218 ILTN---------------------------LDELSLNGNQLKDIGT-LASLTNLTDLDL 249
Query: 352 SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
++N++ P + TKL L+L N S I L + L +L+++ N L + P
Sbjct: 250 ANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDISPI 304
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470
+ ++ L Y+ + NN P S+ +++ LF + NK S D+S S+ ++
Sbjct: 305 SN---LKNLTYLTLYFNNISDISPVSSLTKLQRLF---FANNKVS-DVS--SLANLTNIN 355
Query: 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504
+L N + P NLT++ L L + +T
Sbjct: 356 WLSAGHNQI-SDLTP-LANLTRITQLGLNDQAWT 387
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 33/236 (13%)
Query: 419 KLMYIDISKNN---FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS 475
K + I+ KN F YS+ + +L +S F + S +S +L+ +
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP---SSFTFLNFT 361
Query: 476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL--NSHGLVVLDISNNLLSGH--- 530
+N F +F L +L+ L L+ N K L+ N L LD+S N L+ H
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421
Query: 531 -IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR----QLQLLDLSENRLFGSIASSLNL 585
W + + VL +S N L G++ FR ++++LDL NR+ +L
Sbjct: 422 RTCAWAES---ILVLNLSSNMLTGSV------FRCLPPKVKVLDLHNNRIMSIPKDVTHL 472
Query: 586 SSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKFFGRIP------DQINNHS 634
++ L + +N L +P +F R T L + L DN + P + IN HS
Sbjct: 473 QALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 527
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 170 LGLGNLTNLEVLDLSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLT 227
L N+++LE LD+S N ++ + A ++ VL + +N+L GSV C +
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR---CLPPKVK 453
Query: 228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGE 287
LDL N + +P ++ L L+ L+++ N L V LTSL+Y+ L DN +
Sbjct: 454 VLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
Query: 288 FP 289
P
Sbjct: 513 CP 514
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Query: 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231
L NLTNL L L N+I T++ P +NL L N + + L +L +L
Sbjct: 108 LANLTNLTGLTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
G N + P L++L L+ LDIS N +S SV+A LT+LE L ++N PL
Sbjct: 164 G-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLG 218
Query: 292 LLTN 295
+LTN
Sbjct: 219 ILTN 222
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 66/304 (21%)
Query: 160 WNGISSGATR-LGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESK 218
+NG+ + T+ L LG +++ D+S+ + G L E++ ++ L ++ + + +
Sbjct: 216 FNGLQNSTTQSLWLGTFEDIDDEDISSAMLKG-LCEMS----VESLNLQEHRFSDISSTT 270
Query: 219 GICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL-------SGNLPSV---- 267
C L ELDL +L+G LP + L LK L +S NH + N PS+
Sbjct: 271 FQC-FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 268 --------------IANLTSLEYLALSDNNFQGEFPLSL-LTNHSNLEVLLLKVSSNLRL 312
+ L +L+ L LS N+ + SL L N S+L+ L L + L L
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGL 388
Query: 313 KTENWIPTFQLKVLQLPNCNLKV----IPSFLLH-----QYDFKFLDLSSNKLVGNFP-- 361
+++ + QL++L L L + P LH + FLD S+ L+ P
Sbjct: 389 QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVL 448
Query: 362 -----------------TWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDL--LRHLDISN 402
T L+Q LEVL LS+ I Q + H L + H+D+S+
Sbjct: 449 RHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQ--QAFHSLGKMSHVDLSH 506
Query: 403 NNLT 406
N+LT
Sbjct: 507 NSLT 510
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527
S+E L++ E+ F T+ TQL+ L L H G + +G+ + L L +S N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQ-INNFRQLQLLDLSENRLFGSIASSLNLS 586
NF L L + N + ++ V + LQ LDLS N + S SL L
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 587 SIMHL 591
++ HL
Sbjct: 371 NLSHL 375
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 155/402 (38%), Gaps = 90/402 (22%)
Query: 174 NLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLN--GSVESKGICELKNLTELD 230
NL NLE L L +N IS + P RNLKVL +NN ++ + + + + NL+ L+
Sbjct: 124 NLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLS-LN 182
Query: 231 LGENNLEGQLPWCLSDLI-------GLKVLDISFNHLSGNLPSV--IANLTSLEYLALSD 281
NN++G I G L + FN L + + ++ +S
Sbjct: 183 FNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISS 242
Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
+G +S +E L L+ + + + QL+ L L +LK +PS
Sbjct: 243 AMLKGLCEMS-------VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPS--- 292
Query: 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401
K L+L L+ L LS N F + Q+ L HL I
Sbjct: 293 ---GMKGLNL-------------------LKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 402 NNNLTGMLPQNMGIV--IQKLMYIDISKNNFEGN--IPYSIGEMKELFLLDLSRNKFSGD 457
N L +G + + L +D+S N+ E + + + L L+LS N+ G
Sbjct: 331 GN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG- 387
Query: 458 LSATSVIRCASLEYLDVS---------ENNFYGHIFPTYMNLTQ---------------- 492
L + + C LE LD++ ++ F F +NLT
Sbjct: 388 LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
Query: 493 LRWLYLKNNHF-------------TGKIKAGLLNSHGLVVLD 521
LR L LK NHF G ++ +L+S GL+ +D
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSID 489
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 132/532 (24%), Positives = 213/532 (40%), Gaps = 112/532 (21%)
Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVE 216
+G S T + G ++ LDLS N+I+ G L A NL+VL ++++ +N
Sbjct: 37 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA---NLQVLILKSSRIN---- 89
Query: 217 SKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
+EG + L L+ LD+S NHLS S L+SL+Y
Sbjct: 90 ------------------TIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKY 128
Query: 277 LALSDNNFQGEFPLSLLTNHSNLEVLLL---KVSSNLR------LKTENWIPTFQLKVLQ 327
L L N +Q SL N +NL+ L + + S +R L + N + L +
Sbjct: 129 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 188
Query: 328 LPNCNLKVI------------PSFLLHQY-----DFKFLDLSSNKLV----GNFPTWLMQ 366
+ +LK I +FLL + ++L+L L P +
Sbjct: 189 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 248
Query: 367 NNTKLEVLR---LSNNSFSG-------ILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV 416
+ K R L++ SF+ IL+L +V+ D D + N L P +V
Sbjct: 249 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-----DCTLNGLGDFNPSESDVV 303
Query: 417 IQ--KLMYIDISKNNFEGNIP--YSIGEMKELFLLDLSRNKFSGDLSATSVIRCA----- 467
+ K+ + I + +IP Y ++ ++ L + + + S ++ C+
Sbjct: 304 SELGKVETVTIRR----LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 359
Query: 468 -SLEYLDVSENNFYGHIFPTYM---NLTQLRWLYLKNNHFTGKIKAG--LLNSHGLVVLD 521
SLE+LD+SEN L+ L L NH K G LL L LD
Sbjct: 360 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 419
Query: 522 ISNNLLSGHIP--C-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578
IS N +P C W +L++ ++ IP + L++LD+S N L
Sbjct: 420 ISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNL--- 469
Query: 579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630
+ SL L + LY+ N L ++LF LL + + N+ +PD I
Sbjct: 470 DSFSLFLPRLQELYISRNKLKTLPDASLF--PVLLVMKIASNQ-LKSVPDGI 518
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 132/532 (24%), Positives = 213/532 (40%), Gaps = 112/532 (21%)
Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVE 216
+G S T + G ++ LDLS N+I+ G L A NL+VL ++++ +N
Sbjct: 11 DGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA---NLQVLILKSSRIN---- 63
Query: 217 SKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
+EG + L L+ LD+S NHLS S L+SL+Y
Sbjct: 64 ------------------TIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKY 102
Query: 277 LALSDNNFQGEFPLSLLTNHSNLEVLLL---KVSSNLR------LKTENWIPTFQLKVLQ 327
L L N +Q SL N +NL+ L + + S +R L + N + L +
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162
Query: 328 LPNCNLKVI------------PSFLLHQY-----DFKFLDLSSNKLV----GNFPTWLMQ 366
+ +LK I +FLL + ++L+L L P +
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 367 NNTKLEVLR---LSNNSFSG-------ILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV 416
+ K R L++ SF+ IL+L +V+ D D + N L P +V
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-----DCTLNGLGDFNPSESDVV 277
Query: 417 IQ--KLMYIDISKNNFEGNIP--YSIGEMKELFLLDLSRNKFSGDLSATSVIRCA----- 467
+ K+ + I + +IP Y ++ ++ L + + + S ++ C+
Sbjct: 278 SELGKVETVTIRR----LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333
Query: 468 -SLEYLDVSENNFYGHIFPTYM---NLTQLRWLYLKNNHFTGKIKAG--LLNSHGLVVLD 521
SLE+LD+SEN L+ L L NH K G LL L LD
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393
Query: 522 ISNNLLSGHIP--C-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578
IS N +P C W +L++ ++ IP + L++LD+S N L
Sbjct: 394 ISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIP------QTLEVLDVSNNNL--- 443
Query: 579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630
+ SL L + LY+ N L ++LF LL + + N+ +PD I
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQ-LKSVPDGI 492
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 111/257 (43%), Gaps = 52/257 (20%)
Query: 360 FPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKHDL--LRHLDISNNNLTGMLP------ 410
P + QN L VL L N S LP+ + H+ L L +SNNNL +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 411 ---QNMGIVIQKLMYIDIS--KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIR 465
QN+ + +L ++D+S + F N+ Y +L +T I
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSY--------------------NLLSTLAIP 210
Query: 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 525
A +E LD S N+ P + LT L+ L++N+ T A LLN GLV +D+S N
Sbjct: 211 IA-VEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT--AWLLNYPGLVEVDLSYN 264
Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ----LQLLDLSENRLFGSIAS 581
L + L+ L +S N L V +N + Q L++LDLS N L +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLHVERN 319
Query: 582 SLNLSSIMHLYLQNNAL 598
+ +LYL +N++
Sbjct: 320 QPQFDRLENLYLDHNSI 336
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 111/257 (43%), Gaps = 52/257 (20%)
Query: 360 FPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKHDL--LRHLDISNNNLTGMLP------ 410
P + QN L VL L N S LP+ + H+ L L +SNNNL +
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSS---LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 411 ---QNMGIVIQKLMYIDIS--KNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIR 465
QN+ + +L ++D+S + F N+ Y +L +T I
Sbjct: 165 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSY--------------------NLLSTLAIP 204
Query: 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN 525
A +E LD S N+ P + LT L+ L++N+ T A LLN GLV +D+S N
Sbjct: 205 IA-VEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT--AWLLNYPGLVEVDLSYN 258
Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQ----LQLLDLSENRLFGSIAS 581
L + L+ L +S N L V +N + Q L++LDLS N L +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLHVERN 313
Query: 582 SLNLSSIMHLYLQNNAL 598
+ +LYL +N++
Sbjct: 314 QPQFDRLENLYLDHNSI 330
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 175 LTNLEVLDLSANRISGSLTE--LAPFRNLKVLGMRNNLLNGSVESKGICE-LKNLTELDL 231
LTNL+ L L N++ SL + NL L + +N L KG+ + L NLTELDL
Sbjct: 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSL--PKGVFDKLTNLTELDL 164
Query: 232 GENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
N L+ L LK L + N L V LTSL+Y+ L DN + P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 171 GLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
L LTNL L L+ N++ G +L NLK L + N L S+ +L NL
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLT---NLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
T L+L N L+ L L LD+S+N L V LT L+ L L N +
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 57/281 (20%)
Query: 226 LTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL-------SGNLPSV----------- 267
L ELDL +L +LP L L LK L +S N + N PS+
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 268 -------IANLTSLEYLALSDNNFQGEFPLSL-LTNHSNLEVLLLKVSSNLRLKTENWIP 319
+ NL +L L LS ++ + +L L N S+L+ L L + L LKTE +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 320 TFQLKVLQLPNCNLKVI----PSFLLH-----QYDFKFLDLSSNKLVGNFP--------- 361
QL++L L LKV P LH LD+SS +L P
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458
Query: 362 ----------TWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQ 411
T +Q +LE+L LS S I Q ++ H+D+S+N LT +
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 412 NMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRN 452
+ + K +Y++++ N+ +P + + + ++L +N
Sbjct: 519 ALSHL--KGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 128/523 (24%), Positives = 213/523 (40%), Gaps = 107/523 (20%)
Query: 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALS--------D 281
+LG N + G LP + L+ SFN L + + L +L +L L+ +
Sbjct: 21 NLGLNEIPGTLPN------STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 282 NNFQGEFPLSLLTNHSNLEVLLLK--VSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSF 339
+ FQ + L L +N + + + +S LK +I T + +P N K + S
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134
Query: 340 LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ--LPKVKHDLLRH 397
L +SS KL FPT KL+VL NN+ + + + ++
Sbjct: 135 YLGSNH-----ISSIKLPKGFPT------EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183
Query: 398 LDISNNNLTGMLP----------------QNMGIVIQKLMYI----------------DI 425
L+++ N++ G+ P QN+ ++ + L DI
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Query: 426 SKNNFEGNIPYSIGE--MKELFLLDLSRNKF---SG----DLSATSV-------IRCASL 469
S FEG S+ +++ + ++S N F SG DL+AT + + ++L
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303
Query: 470 EYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLS 528
+ L +S N F + N L L +K N ++ G L N L LD+S++ +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 529 GHIPC--WIGNFSYLDVLLMSKNHLEGNIPVQINNFR---QLQLLDLSENRLFGSIASS- 582
C + N S+L L +S N + ++ F+ QL+LLDL+ RL A S
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 583 ---------LNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF-FGRI--PDQI 630
LNLS + L + + L +P+ L L+L+ N F G I + +
Sbjct: 421 FQNLHLLKVLNLSHSL-LDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSL 472
Query: 631 NNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS 673
L +L+L L A L+ + +DLSHN+L S
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 47/297 (15%)
Query: 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGM 408
LDL++ L P+ L+ +T L+ L LS N F + Q+ L HL I N T
Sbjct: 283 LDLTATHL-SELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKR 338
Query: 409 LPQNMGIV--IQKLMYIDISKNNFEGN--IPYSIGEMKELFLLDLSRNKFSGDLSATSVI 464
L G + ++ L +D+S ++ E + + + L L+LS N+ L +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFK 397
Query: 465 RCASLEYLDVSENNF-YGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523
C LE LD++ + NL L+ L L SH L LDIS
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL---------------SHSL--LDIS 440
Query: 524 N-------------NLLSGHIPCW-------IGNFSYLDVLLMSKNHLEGNIPVQINNFR 563
+ NL H P + L++L++S L + +
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500
Query: 564 QLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620
+ +DLS NRL S +L+ ++L L +N +S +PS L ++ T++LR N
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSLNLSSIMHLYLQN 595
+ +L++L +S+NH+ N L L+L +NRL + + LS + L+L+N
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 596 NALSGQIPSTLF-RSTELLTLDLRDNKFFGRIPD-QINNHSELRVLLLRGNYLQGQIPIA 653
N + IPS F R L LDL + K I + S LR L L L+ +IP
Sbjct: 146 NPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202
Query: 654 LCQLQKLGILDLSHNKLNGSIPSCFVNML 682
L L KL LDLS N L+ P F ++
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLM 231
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 171 GLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
GL NL LE+ D NR++ G+ L+ LK L +RNN + S+ S + +L
Sbjct: 110 GLANLNTLELFD---NRLTTIPNGAFVYLS---KLKELWLRNNPIE-SIPSYAFNRIPSL 162
Query: 227 TELDLGE---------NNLEG-------QLPWC-------LSDLIGLKVLDISFNHLSGN 263
LDLGE EG L C L+ LI L LD+S NHLS
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222
Query: 264 LPSVIANLTSLEYLALSDNNFQ 285
P L L+ L + + Q
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQ 244
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 67/155 (43%), Gaps = 32/155 (20%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLS----------GNL--------------PSVIANLTS 273
LP L L VLD+SFN L+ G L P ++
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
LE L+L++N+ E P LL NL+ LLL+ +S
Sbjct: 150 LEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLS----------GNL--------------PSVIANLTS 273
LP L L VLD+SFN L+ G L P ++
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
LE L+L++N E P LL NL+ LLL+ +S
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
G + L LDLS N+ + +L LDVS N L +L+ LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
K N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 98/243 (40%), Gaps = 24/243 (9%)
Query: 449 LSRNKFSGDLSA-TSVIRCASLEYLDVSENNFYGHIF---PTYMNLTQLRWLYLKNNHFT 504
L R DL T +I+ SL+ L V I + ++ L+ L L+N T
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 505 GKIKAGLLNSHG--LVVLDISNNLLSGHIPCWIGNFSY-----LDVLLMSKNHLEGNIPV 557
G LL + G L +L++ N + W+ L VL +++ H
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167
Query: 558 QINNFRQLQLLDLSENRLFG-----SIASSLNLSSIMHLYLQNNAL---SGQIPSTLFRS 609
Q+ F L LDLS+N G S L ++ L L+N + SG +
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 610 TELLTLDLRDNKFFGRI-PDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668
+L LDL N + S+L L L L+ Q+P L KL +LDLS+N
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYN 284
Query: 669 KLN 671
+L+
Sbjct: 285 RLD 287
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLS----------GNL--------------PSVIANLTS 273
LP L L VLD+SFN L+ G L P ++
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
LE L+L++N E P LL NL+ LLL+ +S
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
G + L LDLS N+ + +L LDVS N L +L+ LYL
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL--PALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
K N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLS----------GNL--------------PSVIANLTS 273
LP L L VLD+SFN L+ G L P ++
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
LE L+L++N E P LL NL+ LLL+ +S
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 439 GEMKELFLLDLSRNKF-SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY 497
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 165 SGATRL-GLGNLTNLEVLDLSANRISGSLTELAPFRNL-KVLGMR---NNLLNGSVESKG 219
+G T + G+ L NL L+L N+I T+LAP +NL K+ + N L N S
Sbjct: 51 TGVTTIEGVQYLNNLIGLELKDNQI----TDLAPLKNLTKITELELSGNPLKNVS----A 102
Query: 220 ICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLAL 279
I L+++ LDL + P L+ L L+VL + N ++ P +A LT+L+YL++
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 280 SDNNFQGEFPLSLLTNHSNLEV 301
+ PL+ L+ + L+
Sbjct: 159 GNAQVSDLTPLANLSKLTTLKA 180
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLS----------GNL--------------PSVIANLTS 273
LP L L VLD+SFN L+ G L P ++
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308
LE L+L++N E P LL NL+ LLL+ +S
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 439 GEMKELFLLDLSRNKF-SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY 497
G + L LDLS N+ S L ++ +L LDVS N L +L+ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHL 551
LK N L + L L ++NN L+ + LD LL+ +N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 17/148 (11%)
Query: 159 SWNGISSGATRL-GLGNLTNLEVLDLSANRISGSLTELAPFRNL-KVLGMR---NNLLNG 213
+ + ++G T + G+ L NL L+L N+I T+L P +NL K+ + N L N
Sbjct: 51 TLSAFNTGVTTIEGIQYLNNLIGLELKDNQI----TDLTPLKNLTKITELELSGNPLKNV 106
Query: 214 SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
S I L+++ LDL + P L+ L L+VL + N ++ P +A LT+
Sbjct: 107 S----AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTN 158
Query: 274 LEYLALSDNNFQGEFPLSLLTNHSNLEV 301
L+YL++ +N PL+ L+ + L
Sbjct: 159 LQYLSIGNNQVNDLTPLANLSKLTTLRA 186
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 171 GLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
+ L +++ LDL++ +I+ +T LA NL+VL + LN + L NL L
Sbjct: 108 AIAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLD---LNQITNISPLAGLTNLQYLS 163
Query: 231 LGENNLEGQLPWC-LSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289
+G N + P LS L L+ D + +S +A+L +L + L DN P
Sbjct: 164 IGNNQVNDLTPLANLSKLTTLRADDNKISDISP-----LASLPNLIEVHLKDNQISDVSP 218
Query: 290 LSLLTN 295
L+ L+N
Sbjct: 219 LANLSN 224
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 183 LSANRIS-GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN-NLEGQL 240
L NRIS RNL +L + +N L G +++ L L +LDL +N L
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
P L L L + L P + L +L+YL L DNN Q
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 127/481 (26%), Positives = 191/481 (39%), Gaps = 65/481 (13%)
Query: 174 NLTNLEVLDLSANRISGSLTELAPF-RNLKVLGMRNNLLNGSVESKGICE-LKNLTELDL 231
+L+ L +L +S NRI + F + L+ L + +N L K C NL LDL
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-----VKISCHPTVNLKHLDL 97
Query: 232 GENNLEGQLPWC--LSDLIGLKVLDISFNHL--SGNLPSVIANLTSLEYLALSDNNFQGE 287
N + LP C ++ LK L +S HL S LP N++ + L L + + E
Sbjct: 98 SFNAFDA-LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV-LLVLGETYGEKE 155
Query: 288 FPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFK 347
P L N E L + +N K ++I + V + N L I L
Sbjct: 156 DPEGL--QDFNTESLHIVFPTN---KEFHFI--LDVSVKTVANLELSNIKCVLEDNKCSY 208
Query: 348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN-----NSFSGILQLPKVKHDLLRHLDISN 402
FL + + +Q N KL L L+N NSF ILQL V H + + ISN
Sbjct: 209 FLSILAK----------LQTNPKLSNLTLNNIETTWNSFIRILQL--VWHTTVWYFSISN 256
Query: 403 NNLTGMLP----QNMGIVIQKLMYIDISKN--NFEGNIPYSIGEMKELFLLDLSRNKFSG 456
L G L G ++ L + + F + Y I + +S +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 457 DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNS 514
L + + + +LD S N +F +LT+L L L+ N KI
Sbjct: 317 MLCPSKI---SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLL---MSKNHLEGNIPVQINNFR----QLQL 567
L LDIS N +S G+ S+ LL MS N L I FR ++++
Sbjct: 374 KSLQQLDISQNSVSYDEK--KGDCSWTKSLLSLNMSSNILTDTI------FRCLPPRIKV 425
Query: 568 LDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKFFGRI 626
LDL N++ + L ++ L + +N L +P +F R T L + L N +
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 627 P 627
P
Sbjct: 485 P 485
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 32/164 (19%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
LP L L VLD+SFN L+ + L L+ L L N + P LLT
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT--- 145
Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
PT +L+ L L N NL +P+ LL
Sbjct: 146 ---------------------PTPKLEKLSLANNNLTELPAGLL 168
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
LP L L VLD+SFN L+ + L L+ L L N + P LLT
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT--- 145
Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
PT +L+ L L N NL +P+ LL+
Sbjct: 146 ---------------------PTPKLEKLSLANNNLTELPAGLLN 169
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 156/383 (40%), Gaps = 55/383 (14%)
Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFR-NLKV---LGMRNNLLNGSV 215
N I S NLTNL +DLS N I ++ +L R N +V L M N ++ +
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 196
Query: 216 ESKGICELKNLTELDL-GENNLEGQLPWCLSDLIGLKVLDISFNHLSG--NL----PSVI 268
+ + +K L EL L G N + CL +L GL V + NL PS++
Sbjct: 197 QDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255
Query: 269 ANLTSL---EYLALSDNNFQGEF-PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT-FQL 323
L + E+ N+F + L N S + + + + +K +P F+
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL------AGVSIKYLEDVPKHFKW 309
Query: 324 KVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN--SF 381
+ L + C LK P+ L K L L+ NK +F + + L L LS N SF
Sbjct: 310 QSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSF 364
Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGI-----------------------VIQ 418
SG + + LRHLD+S N M MG+ ++
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
KL+Y+DIS N + + + L L ++ N F + + +L +LD+S+
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484
Query: 479 FYGHIFPTYMNLTQLRWLYLKNN 501
+ + L +L+ L + +N
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHN 507
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 16/236 (6%)
Query: 163 ISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLL--NGSV-ESKG 219
++ G+ L +L LDLS N +S S + +L +R+ L NG++ S
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394
Query: 220 ICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLA 278
L+ L LD + L+ + L L LDIS+ + + + LTSL L
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW---IPTFQLKVLQLPNCNLKV 335
++ N+F+ ++ N +NL L L S +L+ +W +L++L + + NL
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDL---SKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511
Query: 336 IPSFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTK-LEVLRLSNNSFSGILQLPK 389
+ S +Q Y LD S N++ + ++Q+ K L L+NNS + I + K
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETS--KGILQHFPKSLAFFNLTNNSVACICEHQK 565
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
LP L L VLD+SFN L+ + L L+ L L N + P LLT
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT--- 145
Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
PT +L+ L L N NL +P+ LL+
Sbjct: 146 ---------------------PTPKLEKLSLANNNLTELPAGLLN 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 156/383 (40%), Gaps = 55/383 (14%)
Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFR-NLKV---LGMRNNLLNGSV 215
N I S NLTNL +DLS N I ++ +L R N +V L M N ++ +
Sbjct: 133 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 191
Query: 216 ESKGICELKNLTELDL-GENNLEGQLPWCLSDLIGLKVLDISFNHLSG--NL----PSVI 268
+ + +K L EL L G N + CL +L GL V + NL PS++
Sbjct: 192 QDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 250
Query: 269 ANLTSL---EYLALSDNNFQGEF-PLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT-FQL 323
L + E+ N+F + L N S + + + + +K +P F+
Sbjct: 251 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL------AGVSIKYLEDVPKHFKW 304
Query: 324 KVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN--SF 381
+ L + C LK P+ L K L L+ NK +F + + L L LS N SF
Sbjct: 305 QSLSIIRCQLKQFPTLDLPF--LKSLTLTMNKGSISFKKVALPS---LSYLDLSRNALSF 359
Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGI-----------------------VIQ 418
SG + + LRHLD+S N M MG+ ++
Sbjct: 360 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 419
Query: 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478
KL+Y+DIS N + + + L L ++ N F + + +L +LD+S+
Sbjct: 420 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 479
Query: 479 FYGHIFPTYMNLTQLRWLYLKNN 501
+ + L +L+ L + +N
Sbjct: 480 LEQISWGVFDTLHRLQLLNMSHN 502
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 16/236 (6%)
Query: 163 ISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLL--NGSV-ESKG 219
++ G+ L +L LDLS N +S S + +L +R+ L NG++ S
Sbjct: 332 MNKGSISFKKVALPSLSYLDLSRNALSFS--GCCSYSDLGTNSLRHLDLSFNGAIIMSAN 389
Query: 220 ICELKNLTELDLGENNLEGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLA 278
L+ L LD + L+ + L L LDIS+ + + + LTSL L
Sbjct: 390 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 449
Query: 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENW---IPTFQLKVLQLPNCNLKV 335
++ N+F+ ++ N +NL L L S +L+ +W +L++L + + NL
Sbjct: 450 MAGNSFKDNTLSNVFANTTNLTFLDL---SKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 506
Query: 336 IPSFLLHQ-YDFKFLDLSSNKLVGNFPTWLMQNNTK-LEVLRLSNNSFSGILQLPK 389
+ S +Q Y LD S N++ + ++Q+ K L L+NNS + I + K
Sbjct: 507 LDSSHYNQLYSLSTLDCSFNRIETS--KGILQHFPKSLAFFNLTNNSVACICEHQK 560
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 67/164 (40%), Gaps = 32/164 (19%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 90
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
LP L L VLD+SFN L+ + L L+ L L N + P LLT
Sbjct: 91 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT--- 145
Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
PT +L+ L L N NL +P+ LL
Sbjct: 146 ---------------------PTPKLEKLSLANNNLTELPAGLL 168
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 68/165 (41%), Gaps = 32/165 (19%)
Query: 180 VLDLSANRI-SGSLTELAPFRNLKVLGM-RNNLLNGSVESKGICELKNLTELDLGENNLE 237
+L LS N + + SL L P+ L L + R L V+ L L LDL N L+
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGT----LPVLGTLDLSHNQLQ 91
Query: 238 GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297
LP L L VLD+SFN L+ + L L+ L L N + P LLT
Sbjct: 92 S-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT--- 146
Query: 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLH 342
PT +L+ L L N NL +P+ LL+
Sbjct: 147 ---------------------PTPKLEKLSLANNNLTELPAGLLN 170
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 119/461 (25%), Positives = 190/461 (41%), Gaps = 87/461 (18%)
Query: 159 SWNGISSGATRLGLGNLTNLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVES 217
S N I SG T ++ LDLS NRI+ S ++L NL+ L + +N +N ++E
Sbjct: 16 SLNSIPSGLTE-------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE 67
Query: 218 KGICELKNLTELDLGEN---NLEGQLPWCLSDLIGLKVL--------DIS-FNHLS---- 261
L +L LDL N NL LS L L +L + S F+HL+
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 262 ---GNLPSVI-------ANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLR 311
GN+ + A LT LE L + ++ Q P SL + N+ L+L + ++
Sbjct: 128 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL-KSIQNVSHLILHMKQHIL 186
Query: 312 LKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS---NKLVGNFP--TWLMQ 366
L T ++ L+L + +L F F +LS+ N L+ F +
Sbjct: 187 LLEIFVDVTSSVECLELRDTDLDT----------FHFSELSTGETNSLIKKFTFRNVKIT 236
Query: 367 NNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQ--KLMYID 424
+ + +V++L N SG+L+L D + N + + VI K+ +
Sbjct: 237 DESLFQVMKLLNQ-ISGLLEL--------EFDDCTLNGVGNFRASDNDRVIDPGKVETLT 287
Query: 425 ISKNNFEGNIP--YSIGEMKELFLLDLSRNKFSGDLSATSVIRC------ASLEYLDVSE 476
I + +IP Y ++ L+ L + + + S ++ C SLEYLD+SE
Sbjct: 288 IRR----LHIPRFYLFYDLSTLYSLTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSE 343
Query: 477 NNFYGHIFPTYM---NLTQLRWLYLKNNHFTGKIKAG--LLNSHGLVVLDIS-NNLLSGH 530
N L+ L L+ NH K G LL L +DIS N+ S
Sbjct: 344 NLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMP 403
Query: 531 IPC-WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDL 570
C W YL++ + + G IP + L++LD+
Sbjct: 404 ETCQWPEKMKYLNLSSTRIHSVTGCIP------KTLEILDV 438
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 183 LSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN-NLEGQL 240
L NRIS RNL +L + +N+L +++ L L +LDL +N L
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVD 96
Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
P L L L + L P + L +L+YL L DN Q
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 214 SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
SV + L +L L L +N + P DL L L + N+LS +A L +
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 274 LEYLALSDN 282
L+YL L+DN
Sbjct: 226 LQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 183 LSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN-NLEGQL 240
L NRIS RNL +L + +N+L +++ L L +LDL +N L
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVD 97
Query: 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
P L L L + L P + L +L+YL L DN Q
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 214 SVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273
SV + L +L L L +N + P DL L L + N+LS +A L +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 274 LEYLALSDN 282
L+YL L+DN
Sbjct: 227 LQYLRLNDN 235
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381
Q LQL NL +P L Q L+++ N L+ L + LE L +N
Sbjct: 60 QFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALIS-----LPELPASLEYLDACDNRL 112
Query: 382 SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
S + +LP L+HLD+ NN LT LP+ + L YI+ N
Sbjct: 113 STLPELPAS----LKHLDVDNNQLT-XLPELPAL----LEYINADNNQL 152
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 180 VLDLSANRISG--SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL- 236
++ LS NR+ L L +L++L + N + + E +L +L LGEN L
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464
Query: 237 ---EGQLPW-CLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
E +L W L L+VL ++ N+L+ P V ++LT+L L+L+ N L++
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR------LTV 518
Query: 293 LTNH---SNLEVL 302
L+++ +NLE+L
Sbjct: 519 LSHNDLPANLEIL 531
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 53/324 (16%)
Query: 379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSI 438
N+F+G+ + +RHLD+S+ L + ++ L ++++ N +
Sbjct: 258 NTFAGLAR------SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498
+ L +L+LS N G+L +++ + Y+D+ +N+ T+ L +L+ L L
Sbjct: 311 YGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 499 KNN-----HFTGKIKAGLLNSHGLVVL---DISNNLLSGHIPCWIGNFSYLDVLLMSKNH 550
++N HF I L+ + LV L +++ NL+ +S+N
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH-----------------LSENR 412
Query: 551 LEG-NIPVQINNFRQLQLLDLSENRLFGSIASSLNLS---SIMHLYLQNN----ALSGQI 602
LE +I + LQ+L L++NR F S + S S+ L+L N A ++
Sbjct: 413 LENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471
Query: 603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYL----QGQIPIALCQL 657
+F L + ++ + +P + +H + LR L L N L +P
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP------ 525
Query: 658 QKLGILDLSHNKLNGSIPSCFVNM 681
L ILD+S N+L P FV++
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSL 549
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
A E LD+ T+ LT+L WL L N + AG+ + L L ++NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93
Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN- 584
L+ + + LD L + N L+ + +L+ L L+ N+L A + +
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 585 LSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKF 622
L+++ L L N L +P F R +L T+ L N+F
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS-HGLVVLDISNN 525
A E LD+ T+ LT+L WL L N + AG+ + L L ++NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANN 93
Query: 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN- 584
L+ + + LD L + N L+ + +L+ L L+ N+L A + +
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 585 LSSIMHLYLQNNALSGQIPSTLF-RSTELLTLDLRDNKF 622
L+++ L L N L +P F R +L T+ L N+F
Sbjct: 154 LTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 370 KLEVLRLSNNSFSGILQLPKV----KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425
KL +RLS+N+F Q P + KH L HL + NN G+ PQ + + L + +
Sbjct: 94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---GLGPQAGAKIARALQELAV 150
Query: 426 SKN 428
+K
Sbjct: 151 NKK 153
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 370 KLEVLRLSNNSFSGILQLPKV----KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425
KL +RLS+N+F Q P + KH L HL + NN G+ PQ + + L + +
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN---GLGPQAGAKIARALQELAV 151
Query: 426 SKN 428
+K
Sbjct: 152 NKK 154
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 176 TNLEVLDLSANRISGSLTEL-APFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN 234
+ ++ DLS ++I L + + F +L+ L + N +N ++ L +L +L+L +N
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN 333
Query: 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285
L +L L+VLD+S+NH+ L +L+ LAL N +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 148/385 (38%), Gaps = 50/385 (12%)
Query: 244 LSDLIGLKV------LDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLT-NH 296
L DL LKV L I N G +I L ++L L F G L +LT
Sbjct: 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112
Query: 297 SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI--PSFLLHQYDFKFLDLSSN 354
NL+ +L S N + P L++L L + N+K I SF L+ F LDL+ N
Sbjct: 113 CNLDGAVL--SGNF------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 355 KLVGNFPTWLMQNNTK-LEVLRLSNNSFSGI----LQLPKV----KHDLLRHLDISNNNL 405
K+ L+ K +LRLS+ + + L K K+ + LD+S N
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224
Query: 406 TGMLPQNM-----GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA 460
+ + G IQ L I N++ N+ S G D F G L A
Sbjct: 225 KESMAKRFFDAIAGTKIQSL----ILSNSY--NMGSSFGHTN---FKDPDNFTFKG-LEA 274
Query: 461 TSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520
+ V C D+S++ + + + + T L L L N L+ L
Sbjct: 275 SGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580
++S N L N L+VL +S NH+ L+ L L N+L S+
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVP 387
Query: 581 SSL--NLSSIMHLYLQNNALSGQIP 603
+ L+S+ ++L N P
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 27/99 (27%)
Query: 550 HLEGN----IPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPST 605
+L+GN +P +++N++ L L+DLS NR+ + LS Q S
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRI--------------------STLSNQSFSN 76
Query: 606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644
+ T+LLTL L N+ P + LR+L L GN
Sbjct: 77 M---TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 142/340 (41%), Gaps = 57/340 (16%)
Query: 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVL--------LLKVS 307
S L +L S++A+ SL L + + SLL +++NL+ L L VS
Sbjct: 85 SLPELPPHLESLVASCNSLTELPELPQSLK-----SLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 308 SNLRLKTENWIPTFQ----LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTW 363
+N K +P Q LK++ + N +LK +P +F+ +N+L P
Sbjct: 140 NNQLEK----LPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EELPE- 190
Query: 364 LMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYI 423
+QN L + NNS + LP + ++ NN+ LP+ + +Y
Sbjct: 191 -LQNLPFLTAIYADNNSLKKLPDLPLSLESI-----VAGNNILEELPELQNLPFLTTIYA 244
Query: 424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHI 483
D NN +P ++ L + R+ + DL SL +LDVSEN F G
Sbjct: 245 D---NNLLKTLPDLPPSLEALNV----RDNYLTDLPELP----QSLTFLDVSENIFSG-- 291
Query: 484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV 543
L++L N + +I++ L L++SNN L +P L+
Sbjct: 292 ------LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPALPP---RLER 341
Query: 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL 583
L+ S NHL +P N +QL ++ + R F I S+
Sbjct: 342 LIASFNHL-AEVPELPQNLKQLH-VEYNPLREFPDIPESV 379
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 159 SWNGISSGATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGS 214
SWN + + + L+VLDLS I G+ L+ +L L + N + S
Sbjct: 37 SWNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-S 91
Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTS 273
+ L +L +L E NL + + L LK L+++ N + S LP +NLT+
Sbjct: 92 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 151
Query: 274 LEYLALSDNNFQGEFPLSLLTNH 296
LE+L LS N Q + L H
Sbjct: 152 LEHLDLSSNKIQSIYCTDLRVLH 174
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 171 GLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
L LTNL L L+ N++ G +L NLK L + N L S+ +L NL
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLT---NLKELVLVENQLQ-SLPDGVFDKLTNL 135
Query: 227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
T L L N L+ L L LD+ N L V LT L+ L+L+DN +
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 168 TRLGLGNLTNLEVLDLSANRISGSLTEL-APFRNLKVLGMRNNLLNGSVESKGICELKNL 226
TR L L L+ + R++ L RNL L +R N+ + S +L+NL
Sbjct: 115 TRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENL 172
Query: 227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQG 286
++ G N L + LK L+++ N L + LTSL+ + L N +
Sbjct: 173 ESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 232
Query: 287 EFP 289
P
Sbjct: 233 SCP 235
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 159 SWNGISSGATRLGLGNLTNLEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGS 214
SWN + + + L+VLDLS I G+ L+ +L L + N + S
Sbjct: 38 SWNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-S 92
Query: 215 VESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTS 273
+ L +L +L E NL + + L LK L+++ N + S LP +NLT+
Sbjct: 93 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 152
Query: 274 LEYLALSDNNFQGEFPLSLLTNH 296
LE+L LS N Q + L H
Sbjct: 153 LEHLDLSSNKIQSIYCTDLRVLH 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
L+VLDLS I G+ L+ +L L + N + S+ L +L +L E
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 109
Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
NL + + L LK L+++ N + S LP +NLT+LE+L LS N Q + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 293 LTNH 296
H
Sbjct: 170 RVLH 173
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 26/110 (23%)
Query: 200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSD-LIGLKVLDISFN 258
N ++L + +N + +E L NL EL LG N L G LP + D L L VLD+ N
Sbjct: 41 NAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 259 HLS-----------------------GNLPSVIANLTSLEYLALSDNNFQ 285
L+ LP I LT L +LAL N +
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233
L+VLDLS I G+ L+ +L L + N + S+ L +L +L E
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLS---HLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVE 110
Query: 234 NNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLSL 292
NL + + L LK L+++ N + S LP +NLT+LE+L LS N Q + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 293 LTNH 296
H
Sbjct: 171 RVLH 174
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 178 LEVLDLSANRIS----GSLTELAPFRNLKVLGMR-NNLLNGSVESKGICELKNLTELDLG 232
L+VLDLS I G+ L+ L + G +L G+ G+ L+ L L+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVALETN 113
Query: 233 ENNLEGQLPWCLSDLIGLKVLDISFNHL-SGNLPSVIANLTSLEYLALSDNNFQGEFPLS 291
+LE + + L LK L+++ N + S LP +NLT+LE+L LS N Q +
Sbjct: 114 LASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 292 LLTNH 296
L H
Sbjct: 171 LRVLH 175
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 35/159 (22%)
Query: 261 SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT 320
G LP ++ +L++L L L+DN G+ L LL P
Sbjct: 98 CGILPGMLRSLSTLRELHLNDNPM-GDAGLKLLCEGLQ-------------------DPQ 137
Query: 321 FQLKVLQLPNCNLKV-----IPSFLLHQYDFKFLDLSSNKL----VGNFPTWLMQNNTKL 371
+L+ LQL CNL + S L + DFK L LS+N L V L + +L
Sbjct: 138 CRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQL 197
Query: 372 EVLRLSNNSFSG-----ILQLPKVKHDLLRHLDISNNNL 405
E L+L N + + + K L+ LD+S+N L
Sbjct: 198 ESLKLENCGITAANCKDLCDVVASKAS-LQELDLSSNKL 235
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 208 NNLLNGSVESKGICEL-----KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG 262
NN+++ KG+ E+ + +TE+ L +N ++ P S L+ +D+S N +S
Sbjct: 13 NNIVD--CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 263 NLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
P L SL L L N E P SL
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 208 NNLLNGSVESKGICEL-----KNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG 262
NN+++ KG+ E+ + +TE+ L +N ++ P S L+ +D+S N +S
Sbjct: 13 NNIVD--CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 263 NLPSVIANLTSLEYLALSDNNFQGEFPLSLL 293
P L SL L L N E P SL
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF 100
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 217 SKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
S I + LT L L N+L +LP + +L L+VLD+S N L+ +LP+ + + L+Y
Sbjct: 240 SANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297
Query: 277 LALSDN 282
DN
Sbjct: 298 FYFFDN 303
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 614 TLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS 673
LDL + + F I I + L L L GN L ++P + L L +LDLSHN+L S
Sbjct: 228 ALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284
Query: 674 IP----SCF-----------VNMLFWREGN 688
+P SCF V L W GN
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Query: 174 NLTNLEVLDLSANRIS-----------GSLTELAP----FRNLKVLGMRNNLLNGSVESK 218
+L+NL++ ++SAN SLTEL NL+VL + +N L
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Query: 219 GIC-ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL 260
G C +LK D N+ LPW +L L+ L + N L
Sbjct: 290 GSCFQLKYFYFFD----NMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNG-SVESKG 219
NG S + NL+NL VLDLS NR++ EL LK +N++ E
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 220 ICELKNLTELDLGENNLEGQL 240
+C NL L + N LE Q
Sbjct: 315 LC---NLQFLGVEGNPLEKQF 332
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578
LD+SN L +I I + +L L ++ N L +P +I N L++LDLS NRL
Sbjct: 228 ALDLSN-LQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSL 285
Query: 579 IASSLNLSSIMHLYLQNNALS 599
A + + + Y +N ++
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT 306
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 204 LGMRNNLLNGSVESK-GICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG 262
L + NN L + ES + NLT+LDL NNL S L L+ L + +N++
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 263 NLPSVIANLTSLEYLAL 279
P L++L YL+L
Sbjct: 287 LSPRSFYGLSNLRYLSL 303
>pdb|1TCU|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCU|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Phosphate And
Acetate
pdb|1TCV|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TCV|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Non-detergent
Sulfobetaine 195 And Acetate
pdb|1TD1|A Chain A, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|B Chain B, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|1TD1|C Chain C, Crystal Structure Of The Purine Nucleoside Phosphorylase
From Schistosoma Mansoni In Complex With Acetate
pdb|3FNQ|A Chain A, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|B Chain B, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3FNQ|C Chain C, Crystal Structure Of Schistosoma Purine Nucleoside
Phosphorylase In Complex With Hypoxanthine
pdb|3DJF|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3DJF|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In A Complex With Bcx-34
pdb|3E0Q|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E0Q|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase Complexed With A Novel Monocyclic
Inhibitor
pdb|3E9R|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9R|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With Adenine
pdb|3E9Z|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3E9Z|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase From
Schistosoma Mansoni In Complex With 6-Chloroguanine
pdb|3F8W|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3F8W|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Adenosine
pdb|3FAZ|A Chain A, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|B Chain B, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FAZ|C Chain C, Crystal Structure Of Schistosoma Mansoni Purine Nucleoside
Phosphorylase In Complex With Inosine
pdb|3FB1|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3FB1|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase In
Complex With Ribose-1-Phosphate
pdb|3IEX|A Chain A, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|B Chain B, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
pdb|3IEX|C Chain C, Schistosoma Purine Nucleoside Phosphorylase In Complex
With Guanosine
Length = 287
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 171 GLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230
GLG L D ++I+ T++ F V+G NL+ G++ + + ++ +
Sbjct: 36 GLGKLA-----DGVKDKITIPYTKIPNFPQTSVVGHSGNLIFGTLSGRKVVVMQGRFHMY 90
Query: 231 LGENNLEGQLPWCLSDLIGLKVLDIS 256
G +N LP + L+G+K+L +S
Sbjct: 91 EGYSNDTVALPIRVMKLLGVKILMVS 116
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 177 NLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
N++ LDLS N +S S +LAPF L++L + +N+L +++ + + L+ L
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTL 85
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 181 LDLSANRIS----GSLTELAPFRNLKV------LGMRNNLLNGSVESKGICELKNLTELD 230
+DLS N I+ S + L + LKV L +RNN G L +L L
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG---------LSSLIILK 85
Query: 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPS--VIANLTSLEYLALSDNNFQGEF 288
L N + L L+VL ++ +L G + S LTSLE L L DNN +
Sbjct: 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 289 PLSLLTNHSNLEVL 302
P S N VL
Sbjct: 146 PASFFLNMRRFHVL 159
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 28/131 (21%)
Query: 171 GLGNLTNLEVLDLSANRI-SGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229
GL +L LE+ D I SG+ L+ R L +RNN + S+ S + +L L
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLREL---WLRNNPIE-SIPSYAFNRVPSLMRL 176
Query: 230 DLGE---------NNLEG-------QLPWC-------LSDLIGLKVLDISFNHLSGNLPS 266
DLGE EG L C L+ L+GL+ L++S NH P
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG 236
Query: 267 VIANLTSLEYL 277
L+SL+ L
Sbjct: 237 SFHGLSSLKKL 247
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 140/371 (37%), Gaps = 86/371 (23%)
Query: 217 SKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276
+K IC N+T LDL +N L + D L LD++ P LT L Y
Sbjct: 67 TKLICTSNNITTLDLSQN---TNLTYLACDSNKLTNLDVT--------P-----LTKLTY 110
Query: 277 LALSDNNFQ----GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCN 332
L N + PL N + + + VS N +L + K+ +
Sbjct: 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC--HLNKKITK----- 163
Query: 333 LKVIPSFLLHQYDFKF-----LDLSSNKL-------VGNFPTWLMQNNTKLEVLRLSNNS 380
L V P L D F LD+S NKL N + N +L L S+N
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK 223
Query: 381 FSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMG------IVIQKLMYIDISKNN----F 430
+ I P + L + D S N LT + + + L+ ID++ N F
Sbjct: 224 LTEIDVTPLTQ---LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 431 EGNIPYSIGEM-----KELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP 485
+ I E+ +L+LLD + A + LD+S+N ++
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLD---------------CQAAGITELDLSQNPKLVYL-- 323
Query: 486 TYMNLTQLRWLYLKNNHFTGKIKA-GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL-DV 543
Y+N T+L L + +N K+K+ +N+H + D S+ G IP NF
Sbjct: 324 -YLNNTELTELDVSHN---TKLKSLSCVNAH---IQDFSS---VGKIPALNNNFEAEGQT 373
Query: 544 LLMSKNHLEGN 554
+ M K L N
Sbjct: 374 ITMPKETLTNN 384
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 522 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIA 580
++NN ++ P + L L + N L IP + + QL LDL++N L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPR 98
Query: 581 SSL-NLSSIMHLYLQNN 596
+ NL S+ H+YL NN
Sbjct: 99 GAFDNLKSLTHIYLYNN 115
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 139/598 (23%), Positives = 222/598 (37%), Gaps = 105/598 (17%)
Query: 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGIC 221
G +S T+ + + EV D S +++ +L N+ VL + +N L + +
Sbjct: 4 GSASSTTKCTVSH----EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLR-RLPAANFT 56
Query: 222 ELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281
LT LD+G N + P L LKVL++ N LS A T+L L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLL 341
N+ Q + + NL L L + K + L+ L L N ++ + S L
Sbjct: 117 NSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 175
Query: 342 HQY---DFKFLDLSSNKL----------VGNFPTWLMQN----------------NTKLE 372
+ K L+LSSN++ +G + N NT +
Sbjct: 176 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 235
Query: 373 VLRLSNNSFSGI--LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430
L LSN+ S +K L LD+S NNL ++ + + +L Y + NN
Sbjct: 236 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWLPQLEYFFLEYNNI 294
Query: 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV----------IRCASLEYLDVSENNFY 480
+ +S+ + + L+L R+ +S S+ ++C LE+L++ +N+
Sbjct: 295 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--LEHLNMEDNDIP 352
Query: 481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSY 540
G + L L++L L N+ FT L + V L H P
Sbjct: 353 GIKSNMFTGLINLKYLSLSNS-FTS---LRTLTNETFVSL--------AHSP-------- 392
Query: 541 LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS--LNLSSIMHLYLQNN-- 596
L +L ++KN + + L++LDL N + + L +I +YL N
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Query: 597 --------ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648
AL + + R L +D P L +L L N +
Sbjct: 453 LQLTRNSFALVPSLQRLMLRRVALKNVD--------SSPSPFQPLRNLTILDLSNNNIAN 504
Query: 649 QIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLH 706
L L+KL ILDL HN L W+ N G +Y L LH
Sbjct: 505 INDDMLEGLEKLEILDLQHNNL----------ARLWKHANP---GGPIYFLKGLSHLH 549
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 177 NLEVLDLSANRISG-SLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226
N++ LDLS N +S S +LAPF L++L + +N+L +++ + + L+ L
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTL 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,058,820
Number of Sequences: 62578
Number of extensions: 928366
Number of successful extensions: 2940
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 486
length of query: 783
length of database: 14,973,337
effective HSP length: 106
effective length of query: 677
effective length of database: 8,340,069
effective search space: 5646226713
effective search space used: 5646226713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)