Query 047035
Match_columns 783
No_of_seqs 879 out of 5249
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 07:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.3E-63 1.2E-67 599.9 42.8 569 3-669 34-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 6.1E-59 1.3E-63 564.4 40.6 520 102-677 69-590 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.6E-40 5.6E-45 324.5 -13.2 483 149-678 43-546 (565)
4 KOG4194 Membrane glycoprotein 100.0 5.6E-37 1.2E-41 314.2 7.5 367 250-645 80-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 8.3E-40 1.8E-44 321.0 -13.6 475 75-599 46-541 (565)
6 KOG4194 Membrane glycoprotein 100.0 9.9E-37 2.1E-41 312.3 7.2 387 275-666 55-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 2.3E-36 5.1E-41 326.1 -4.8 505 79-668 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 9E-36 2E-40 321.6 -5.3 491 70-620 17-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 5.1E-32 1.1E-36 279.4 -1.3 364 223-647 6-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.6E-32 7.8E-37 280.5 -3.5 365 271-671 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 7.6E-23 1.6E-27 248.7 25.8 306 346-668 591-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.1E-22 1.1E-26 241.4 27.6 307 322-645 590-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 6.1E-25 1.3E-29 216.6 -3.1 287 200-504 68-359 (498)
14 KOG4237 Extracellular matrix p 99.9 2.5E-24 5.5E-29 212.2 -4.2 288 153-456 69-360 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 3.1E-21 6.7E-26 217.1 17.6 268 345-682 202-469 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 9.5E-21 2.1E-25 213.2 17.8 263 323-630 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.4E-19 9.5E-24 201.4 13.8 222 370-622 179-400 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.5E-24 203.3 11.6 292 322-676 179-475 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-19 4.5E-24 190.4 2.8 255 416-670 21-319 (319)
20 KOG0617 Ras suppressor protein 99.7 4.9E-19 1.1E-23 155.1 -3.4 184 487-676 29-217 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-18 8.9E-23 180.5 0.5 250 422-672 2-292 (319)
22 KOG0617 Ras suppressor protein 99.7 1E-18 2.2E-23 153.1 -4.1 166 511-682 29-196 (264)
23 KOG0532 Leucine-rich repeat (L 99.2 5.9E-13 1.3E-17 138.5 -3.7 196 440-645 73-271 (722)
24 COG4886 Leucine-rich repeat (L 99.2 2.3E-11 5E-16 132.6 6.8 179 491-677 116-296 (394)
25 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.2E-17 136.7 -3.5 194 466-669 74-271 (722)
26 PLN03150 hypothetical protein; 99.1 8.3E-11 1.8E-15 134.0 8.9 111 565-675 420-532 (623)
27 KOG3207 Beta-tubulin folding c 99.1 6.2E-12 1.3E-16 127.2 -0.4 209 100-309 119-338 (505)
28 PF14580 LRR_9: Leucine-rich r 99.1 2.6E-11 5.7E-16 112.6 3.8 108 73-190 18-127 (175)
29 PLN03150 hypothetical protein; 99.1 1.6E-10 3.4E-15 131.7 8.0 95 587-681 419-513 (623)
30 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 4E-15 125.5 8.0 197 78-289 97-294 (394)
31 KOG3207 Beta-tubulin folding c 99.1 1.8E-11 3.8E-16 124.0 -0.2 138 123-260 118-258 (505)
32 PF14580 LRR_9: Leucine-rich r 99.1 6E-11 1.3E-15 110.2 3.4 109 97-212 14-126 (175)
33 KOG1909 Ran GTPase-activating 99.1 1.6E-11 3.4E-16 121.1 -1.6 216 70-285 26-283 (382)
34 KOG1259 Nischarin, modulator o 99.0 9.1E-11 2E-15 112.8 1.2 130 539-673 284-414 (490)
35 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.7E-15 110.2 1.3 128 172-305 280-407 (490)
36 KOG1909 Ran GTPase-activating 98.9 1.1E-10 2.3E-15 115.3 -1.5 112 464-575 182-310 (382)
37 KOG4658 Apoptotic ATPase [Sign 98.8 3.4E-09 7.3E-14 123.3 6.2 130 72-210 521-653 (889)
38 KOG0531 Protein phosphatase 1, 98.8 9E-10 2E-14 120.1 -1.0 247 417-677 71-324 (414)
39 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.3E-14 118.4 -0.9 199 123-357 69-268 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.5E-13 77.8 3.2 60 611-670 2-61 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.9E-08 4.2E-13 117.1 6.1 130 369-502 523-653 (889)
42 PF13855 LRR_8: Leucine rich r 98.6 3.1E-08 6.6E-13 75.5 3.2 59 516-574 2-60 (61)
43 KOG2120 SCF ubiquitin ligase, 98.5 1.6E-09 3.5E-14 104.4 -7.5 193 104-301 187-391 (419)
44 KOG1859 Leucine-rich repeat pr 98.4 3.1E-09 6.8E-14 114.1 -8.2 21 67-87 102-122 (1096)
45 KOG4341 F-box protein containi 98.4 3.6E-09 7.8E-14 106.9 -7.6 280 74-355 138-437 (483)
46 KOG2120 SCF ubiquitin ligase, 98.4 7.5E-09 1.6E-13 99.9 -6.8 157 152-308 186-349 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.3 2.5E-07 5.4E-12 88.4 0.8 142 70-211 26-197 (388)
48 KOG2982 Uncharacterized conser 98.2 2.2E-07 4.8E-12 89.9 0.0 189 223-433 70-264 (418)
49 KOG1859 Leucine-rich repeat pr 98.2 5E-08 1.1E-12 105.1 -5.1 125 468-599 165-292 (1096)
50 KOG2982 Uncharacterized conser 98.2 2.5E-07 5.3E-12 89.6 -0.7 203 100-304 69-286 (418)
51 KOG4579 Leucine-rich repeat (L 98.0 4.3E-07 9.2E-12 77.8 -3.0 112 561-676 51-164 (177)
52 COG5238 RNA1 Ran GTPase-activa 97.9 7.8E-06 1.7E-10 78.4 4.0 42 268-309 88-132 (388)
53 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.3E-10 72.6 5.8 84 103-189 43-126 (233)
54 KOG4341 F-box protein containi 97.8 1E-06 2.3E-11 89.5 -4.7 62 342-403 292-356 (483)
55 KOG3665 ZYG-1-like serine/thre 97.8 6.4E-06 1.4E-10 93.9 0.6 151 102-255 122-282 (699)
56 KOG4579 Leucine-rich repeat (L 97.8 1.4E-06 3.1E-11 74.6 -3.5 11 469-479 29-39 (177)
57 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 78.6 8.0 137 487-645 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.7 4.8E-05 1E-09 70.2 5.6 111 73-189 41-153 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1E-05 2.2E-10 92.3 0.8 108 126-234 122-230 (699)
60 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 77.4 8.0 146 511-678 48-203 (426)
61 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.7E-10 53.8 2.8 36 635-671 2-37 (44)
62 PF12799 LRR_4: Leucine Rich r 97.5 7.8E-05 1.7E-09 51.8 2.8 36 611-647 2-37 (44)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00063 1.4E-08 60.9 7.7 86 458-547 26-111 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00045 9.8E-09 61.8 6.7 125 410-541 4-128 (129)
65 KOG2739 Leucine-rich acidic nu 97.3 9.7E-05 2.1E-09 71.3 2.1 106 72-183 41-150 (260)
66 KOG2123 Uncharacterized conser 97.2 1E-05 2.2E-10 78.0 -5.9 87 100-191 17-103 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.2E-09 68.2 2.3 87 100-189 41-129 (260)
68 PF08263 LRRNT_2: Leucine rich 97.1 0.00023 5E-09 49.3 1.2 25 12-36 19-43 (43)
69 PF00560 LRR_1: Leucine Rich R 96.7 0.00054 1.2E-08 39.5 0.6 22 752-774 1-22 (22)
70 KOG2123 Uncharacterized conser 96.7 4.7E-05 1E-09 73.5 -6.5 83 150-236 18-100 (388)
71 KOG1947 Leucine rich repeat pr 96.4 0.00045 9.8E-09 77.6 -2.0 175 71-259 185-373 (482)
72 KOG1947 Leucine rich repeat pr 96.3 0.00064 1.4E-08 76.4 -1.6 63 174-236 241-307 (482)
73 PF00560 LRR_1: Leucine Rich R 96.1 0.0019 4.2E-08 37.2 0.4 20 660-680 2-21 (22)
74 KOG4308 LRR-containing protein 92.6 0.00082 1.8E-08 73.6 -12.5 182 104-285 89-303 (478)
75 KOG4308 LRR-containing protein 89.2 0.0022 4.8E-08 70.2 -13.1 209 75-283 88-329 (478)
76 PF13504 LRR_7: Leucine rich r 86.9 0.39 8.5E-06 25.5 1.2 14 323-336 3-16 (17)
77 KOG0473 Leucine-rich repeat pr 86.9 0.028 6.1E-07 53.4 -5.4 85 584-671 40-124 (326)
78 PF13516 LRR_6: Leucine Rich r 83.7 0.3 6.5E-06 28.6 -0.2 15 658-672 2-16 (24)
79 KOG3864 Uncharacterized conser 81.8 0.19 4.1E-06 47.1 -2.4 82 419-500 102-185 (221)
80 smart00370 LRR Leucine-rich re 81.1 1.4 3.1E-05 26.3 2.1 21 442-463 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 81.1 1.4 3.1E-05 26.3 2.1 21 442-463 2-22 (26)
82 smart00370 LRR Leucine-rich re 80.3 1.7 3.6E-05 26.0 2.2 14 127-140 3-16 (26)
83 smart00369 LRR_TYP Leucine-ric 80.3 1.7 3.6E-05 26.0 2.2 14 127-140 3-16 (26)
84 KOG0473 Leucine-rich repeat pr 80.2 0.042 9E-07 52.3 -7.3 88 194-285 37-124 (326)
85 KOG3864 Uncharacterized conser 72.3 0.43 9.2E-06 44.9 -2.9 33 104-136 103-135 (221)
86 PF08093 Toxin_23: Magi 5 toxi 58.5 8.1 0.00018 23.6 1.6 18 15-32 3-20 (30)
87 smart00365 LRR_SD22 Leucine-ri 57.1 9.1 0.0002 23.0 1.8 14 151-164 2-15 (26)
88 smart00368 LRR_RI Leucine rich 53.7 11 0.00023 23.1 1.7 14 658-671 2-15 (28)
89 smart00364 LRR_BAC Leucine-ric 50.4 12 0.00025 22.6 1.4 17 322-338 3-19 (26)
90 KOG4242 Predicted myosin-I-bin 45.8 60 0.0013 35.1 6.7 106 541-646 356-480 (553)
91 KOG3763 mRNA export factor TAP 45.2 19 0.0004 39.6 3.1 42 366-407 241-284 (585)
92 KOG4242 Predicted myosin-I-bin 36.2 89 0.0019 33.9 6.3 85 201-285 356-453 (553)
93 smart00367 LRR_CC Leucine-rich 29.9 39 0.00085 20.0 1.6 11 102-112 2-12 (26)
94 KOG3763 mRNA export factor TAP 25.5 34 0.00073 37.7 1.2 37 367-403 216-254 (585)
95 TIGR00864 PCC polycystin catio 21.6 52 0.0011 43.8 2.0 33 616-648 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-63 Score=599.89 Aligned_cols=569 Identities=30% Similarity=0.511 Sum_probs=353.8
Q ss_pred cccccccC-CCCCCCCCcCCCCCCCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeC
Q 047035 3 FLSISDRE-YADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDL 81 (783)
Q Consensus 3 ~~~~~~~~-~~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 81 (783)
+++.++.- .|.+.+++|+.. .|||.|.||+|+. .++|+.++++++.+ . + ..+..|..+++|++|+|
T Consensus 34 l~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~~-~~~v~~L~L~~~~i--------~-~-~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 34 LLSFKSSINDPLKYLSNWNSS--ADVCLWQGITCNN-SSRVVSIDLSGKNI--------S-G-KISSAIFRLPYIQTINL 100 (968)
T ss_pred HHHHHHhCCCCcccCCCCCCC--CCCCcCcceecCC-CCcEEEEEecCCCc--------c-c-cCChHHhCCCCCCEEEC
Confidence 34444432 256778999653 6899999999985 56899999988764 1 1 11334556666666666
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCC
Q 047035 82 SGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWN 161 (783)
Q Consensus 82 s~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n 161 (783)
++|.+.+.+|. ..+..+++|++|+|++|.+++.+|. +.+++|++|+|++|.+.+..|. .++++++|
T Consensus 101 s~n~~~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L-------- 166 (968)
T PLN00113 101 SNNQLSGPIPD---DIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSL-------- 166 (968)
T ss_pred CCCccCCcCCh---HHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCC--------
Confidence 66666554441 1123555566666665555544443 3345555555555555544442 34444444
Q ss_pred CCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC
Q 047035 162 GISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240 (783)
Q Consensus 162 ~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 240 (783)
++|++++|.+.+..+ .++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+
T Consensus 167 -----------------~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 167 -----------------KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred -----------------CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCCcC
Confidence 444444444433333 34444444444444444444444 44555555555555555555555
Q ss_pred CccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCC
Q 047035 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT 320 (783)
Q Consensus 241 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 320 (783)
|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------------------------ 278 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP------------------------------ 278 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch------------------------------
Confidence 55555555555555555555555555555555555555555555443332
Q ss_pred ccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEc
Q 047035 321 FQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDI 400 (783)
Q Consensus 321 ~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 400 (783)
.+..+++|++|++++|.+.+.+|.++. ++++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 279 ------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 279 ------------------SIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred ------------------hHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 222233344444444444444444332 3444444444444444332223345666777777
Q ss_pred ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480 (783)
Q Consensus 401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 480 (783)
++|.+.+.+|..+. .+++|+.|++++|++.+.+|.++..+++|+.|++++|.+.+.+|.. +..+++|+.|++++|+++
T Consensus 340 ~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 340 WSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFS 417 (968)
T ss_pred cCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEee
Confidence 77777777777664 5677888888888887777777777777788888877777666654 456777777777777777
Q ss_pred ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc
Q 047035 481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560 (783)
Q Consensus 481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 560 (783)
+..|..+..++.|+.|++++|.+++.++..+..+++|+.|++++|.+.+.+|..++ .++|+.|++++|++++.+|..+.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhh
Confidence 77777777777777777777777777777677777777777777777777776553 46777777777777777777777
Q ss_pred CCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEE
Q 047035 561 NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL 639 (783)
Q Consensus 561 ~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 639 (783)
++++|+.|++++|++.+.+|..+ .+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 77777777777777777777666 67777777777777777777777777777777777777777777777777777777
Q ss_pred eCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035 640 LLRGNYLQGQIPIALCQLQKLGILDLSHNK 669 (783)
Q Consensus 640 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 669 (783)
++++|++.|.+|.. +.+..+....+.+|+
T Consensus 577 ~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 577 NISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred eccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 77777777777743 344444445556665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.1e-59 Score=564.44 Aligned_cols=520 Identities=33% Similarity=0.508 Sum_probs=431.3
Q ss_pred CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEE
Q 047035 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181 (783)
Q Consensus 102 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 181 (783)
.+++.|+|++|.+.+.++..+..+++|++|+|++|++.+.+|...+.++++|++|++++|.+.+..+ .+.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEE
Confidence 4677788887777777777778888888888888887776675445577777777777777765443 2456777777
Q ss_pred ECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccC
Q 047035 182 DLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL 260 (783)
Q Consensus 182 ~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 260 (783)
++++|.+.+..+ .++.+++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 777777765555 56666666666666666665555 4566666666666666666666666666666666666666666
Q ss_pred CccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhh
Q 047035 261 SGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFL 340 (783)
Q Consensus 261 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l 340 (783)
.+.+|..++++++|++|++++|.+.+. +|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~------------------------------------------------~p~~l 256 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGP------------------------------------------------IPSSL 256 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccc------------------------------------------------cChhH
Confidence 666666666666666666666655443 34455
Q ss_pred hcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCc
Q 047035 341 LHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKL 420 (783)
Q Consensus 341 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L 420 (783)
..+++|++|++++|.+.+.+|..+. ++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+. .+++|
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L 334 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT-SLPRL 334 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh-cCCCC
Confidence 6667788888888888888888876 889999999999999887555567899999999999999988888775 68999
Q ss_pred eEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccC
Q 047035 421 MYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKN 500 (783)
Q Consensus 421 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 500 (783)
+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+ ..+++|+.|++++|++.+.+|..+..+++|+.|++++
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence 999999999999999999999999999999999998888754 5788999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc
Q 047035 501 NHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580 (783)
Q Consensus 501 n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 580 (783)
|.+++..|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence 99999999999999999999999999999999999999999999999999999888866 45899999999999999999
Q ss_pred ccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCC
Q 047035 581 SSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK 659 (783)
Q Consensus 581 ~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 659 (783)
..+ ++++|++|++++|.+.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+..+++
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 888 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEecCCCcCcccCCcc
Q 047035 660 LGILDLSHNKLNGSIPSC 677 (783)
Q Consensus 660 L~~L~ls~N~l~g~iP~~ 677 (783)
|+.|++++|+++|.||+.
T Consensus 573 L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 573 LVQVNISHNHLHGSLPST 590 (968)
T ss_pred cCEEeccCCcceeeCCCc
Confidence 999999999999999963
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-40 Score=324.50 Aligned_cols=483 Identities=26% Similarity=0.373 Sum_probs=361.1
Q ss_pred CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcE
Q 047035 149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228 (783)
Q Consensus 149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 228 (783)
.-..|+.+.+++|.+....+ .+.++..|.+|++.+|++...+++++.+..++.++.++|++. .+| ..+..+.+|..
T Consensus 43 ~qv~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~ 118 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVK 118 (565)
T ss_pred hhcchhhhhhccCchhhccH--hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhh
Confidence 34556777777777766554 466777777777777777776667777777777777777765 555 56666777777
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308 (783)
Q Consensus 229 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~ 308 (783)
++++.|.+. .+|+.++.+..|..++..+|+++ ..|..+.++.+|..+++.+|++. ..|...+.
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-------------- 181 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-------------- 181 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH--------------
Confidence 777777766 45666777777777777777776 55666667777777777777666 44443332
Q ss_pred ccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035 309 NLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP 388 (783)
Q Consensus 309 ~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 388 (783)
++.|++++...|-++.+|+.++.+.+|..|++..|++. .+|+ +.+|..|++++++.|++.-++...
T Consensus 182 -----------m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 182 -----------MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred -----------HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHH
Confidence 44666777788888899999999999999999999987 6674 347889999999999988765444
Q ss_pred ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCC-
Q 047035 389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA- 467 (783)
Q Consensus 389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~- 467 (783)
...++++..||+.+|++. ++|.+++ .+.+|++||+++|.++ .+|.+++++ .|+.|.+.+|.+. .+....+..-+
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~ 322 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQ 322 (565)
T ss_pred hcccccceeeeccccccc-cCchHHH-HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHH
Confidence 568899999999999998 8999997 6889999999999998 678899999 9999999999886 33332221100
Q ss_pred -CCcEEE-------CcCcc---cc-cc----CCCcccCCCCccEEEccCcccccccccccccCC---CCcEEEccCCccc
Q 047035 468 -SLEYLD-------VSENN---FY-GH----IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH---GLVVLDISNNLLS 528 (783)
Q Consensus 468 -~L~~L~-------L~~n~---l~-~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~---~L~~L~Ls~n~l~ 528 (783)
-|++|. ++... -+ .. ..+......+.+.|++++-+++ .+|....... -....+++.|++.
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~ 401 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC 401 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh
Confidence 011111 11110 00 00 1112234567888999888887 4555443333 3888999999998
Q ss_pred ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh
Q 047035 529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF 607 (783)
Q Consensus 529 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~ 607 (783)
.+|..+..+..+.+.-+..|+..+.+|..++.+++|..|+|++|.+. .+|..+ .+..|+.|+++.|.|. .+|..+.
T Consensus 402 -elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y 478 (565)
T KOG0472|consen 402 -ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLY 478 (565)
T ss_pred -hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHh
Confidence 68877776666555444444444588999999999999999999886 677666 8888999999999998 8999998
Q ss_pred cCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035 608 RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF 678 (783)
Q Consensus 608 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 678 (783)
....++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|+.++++++|++|++.+|+|. .|...
T Consensus 479 ~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~ 546 (565)
T KOG0472|consen 479 ELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQ 546 (565)
T ss_pred hHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHHH
Confidence 8888888888999997767777999999999999999998 88999999999999999999998 56644
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-37 Score=314.15 Aligned_cols=367 Identities=24% Similarity=0.227 Sum_probs=289.9
Q ss_pred CCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCC
Q 047035 250 LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLP 329 (783)
Q Consensus 250 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~ 329 (783)
-++|++++|++....+..|.++++|+++++..|.++ .+|. ......+++.|++.+|.+..+..+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~se-------------- 143 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVTSE-------------- 143 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEeeeccccccccHH--------------
Confidence 455777777777666777777777777777777766 5663 122222244443333333333322
Q ss_pred CCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCC
Q 047035 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGML 409 (783)
Q Consensus 330 ~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 409 (783)
.+..++.|+.|||+.|.++ ++|...+..-.++++|+|+.|.|+.+....|..+.+|..|.|+.|+++ .+
T Consensus 144 ---------~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tL 212 (873)
T KOG4194|consen 144 ---------ELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TL 212 (873)
T ss_pred ---------HHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-cc
Confidence 3444455555555555554 344333334467888999999988887777888889999999999998 88
Q ss_pred ChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccC
Q 047035 410 PQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN 489 (783)
Q Consensus 410 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 489 (783)
|...|..+++|+.|+|..|+|.-.--..|.++++|+.|.+..|+++ .+....|..+.++++|+|+.|++...--.++.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccc
Confidence 8888888999999999999987443567889999999999999998 777888889999999999999998877778889
Q ss_pred CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEe
Q 047035 490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD 569 (783)
Q Consensus 490 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 569 (783)
++.|+.|++++|.|....+..+.-+++|++|+|++|.++...+..|..+..|++|.|++|+++..--..|..+++|++||
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence 99999999999999988888888899999999999999998899999999999999999999866667888999999999
Q ss_pred CCCcccccccccc---c-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035 570 LSENRLFGSIASS---L-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY 645 (783)
Q Consensus 570 Ls~N~l~~~~p~~---~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 645 (783)
|++|.++..+.+. + ++++|+.|.+.+|++......+|.++..|+.|||.+|.+...-|+.|..+ .|+.|.+..-.
T Consensus 372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred CcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 9999998877543 3 78999999999999986666788899999999999999988888888887 78887765433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-40 Score=320.95 Aligned_cols=475 Identities=27% Similarity=0.337 Sum_probs=250.5
Q ss_pred CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCC
Q 047035 75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLK 154 (783)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~ 154 (783)
.++.+++++|.+.... +.+.++..|.+|++++|++. ..|++++.+..++.|+.++|++... |. .++.+.+|+
T Consensus 46 ~l~~lils~N~l~~l~-----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p~-~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLR-----EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-PE-QIGSLISLV 117 (565)
T ss_pred chhhhhhccCchhhcc-----HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-cH-HHhhhhhhh
Confidence 4667777777665433 45667777777777777776 4566777777777777777777664 43 577777777
Q ss_pred eEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCc
Q 047035 155 ALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGEN 234 (783)
Q Consensus 155 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 234 (783)
+++.++|.+...++ .++.+..|+.++..+|+++..++.++.+.+|..+++.+|++. ..++..+. ++.|++||...|
T Consensus 118 ~l~~s~n~~~el~~--~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N 193 (565)
T KOG0472|consen 118 KLDCSSNELKELPD--SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSN 193 (565)
T ss_pred hhhccccceeecCc--hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchh
Confidence 77777777766655 566677777777777777766666666667777777777665 34423333 666777776666
Q ss_pred cccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCC
Q 047035 235 NLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKT 314 (783)
Q Consensus 235 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 314 (783)
.+. .+|..++.+.+|..|++..|++. ..| .|.++..|++|+++.|.+. .+|.....+++++.+|++.+|++...+.
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCch
Confidence 665 45666666666666666666665 445 5666666666666666665 5665555566666665555555433322
Q ss_pred CCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhc-----CCCCcE----EEccCccccCc-
Q 047035 315 ENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQN-----NTKLEV----LRLSNNSFSGI- 384 (783)
Q Consensus 315 ~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----l~~L~~----L~L~~n~l~~~- 384 (783)
...-+.+|++|++++|.++.+|..++++ .|+.|.+.+|.+. .+...+.++ +..|+. =.++...-...
T Consensus 270 -e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~ 346 (565)
T KOG0472|consen 270 -EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTET 346 (565)
T ss_pred -HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccc
Confidence 2223344555555555555555555555 5555555555443 111111100 000000 00000000000
Q ss_pred ----ccCCc---cCCCCccEEEcccCcCCCCCChhhhhhcC--CceEEeCCCCcccccCCccccCCCCCCe-eeccCCcC
Q 047035 385 ----LQLPK---VKHDLLRHLDISNNNLTGMLPQNMGIVIQ--KLMYIDISKNNFEGNIPYSIGEMKELFL-LDLSRNKF 454 (783)
Q Consensus 385 ----~~~~~---~~~~~L~~L~L~~n~l~~~~p~~~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~L~~n~l 454 (783)
...++ ......+.|++++-+++ .+|..+|.... -...++++.|++. .+|..+..++.++. +.+++|.+
T Consensus 347 ~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 347 AMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 00000 22333455555555554 45555542211 1445555555554 44544444433332 23333333
Q ss_pred ccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCC
Q 047035 455 SGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW 534 (783)
Q Consensus 455 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~ 534 (783)
+.+|..++.+++|..|++++|.+. .+|..++.+..|+.||++.|++. .+|..
T Consensus 425 --------------------------sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~ 476 (565)
T KOG0472|consen 425 --------------------------SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC 476 (565)
T ss_pred --------------------------ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence 233333444444444444444443 34444444444555555555444 34444
Q ss_pred cCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCccc
Q 047035 535 IGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALS 599 (783)
Q Consensus 535 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~ 599 (783)
+..+..++.+..++|++....|..+.++.+|++|||.+|.+. .+|..+ ++++|++|++++|+|.
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 444444444444445554333344555555555555555554 233333 5555555555555554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-37 Score=312.33 Aligned_cols=387 Identities=22% Similarity=0.191 Sum_probs=256.6
Q ss_pred CEEeCcCCccceecChhhhcCC--CCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEcc
Q 047035 275 EYLALSDNNFQGEFPLSLLTNH--SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLS 352 (783)
Q Consensus 275 ~~L~L~~n~l~~~~p~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls 352 (783)
..|+.+++.+. .+....+.+. +.-+.|++++|.+..+....|..+++|+++++.+|.++.||.......+++.|+|.
T Consensus 55 ~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 45667776654 2221112221 23456888888888887777888888888888888888888776666678888888
Q ss_pred CCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccc
Q 047035 353 SNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG 432 (783)
Q Consensus 353 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 432 (783)
+|.+. .+...-.+.++.|+.|+|+.|.++.+....+..-.++++|+|++|.++ .+-...|..+.+|..|.|+.|+++.
T Consensus 134 ~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 134 HNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred ccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccc
Confidence 87776 344433446677777777777777766555655566777777777776 3444444456677777777777765
Q ss_pred cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccc
Q 047035 433 NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL 512 (783)
Q Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 512 (783)
..+..|..+++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..+.++++|+|..|+++..-..++.
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred cCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 55556666777777777777665 44444566677777777777766665556666677777777777777666666666
Q ss_pred cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEE
Q 047035 513 NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHL 591 (783)
Q Consensus 513 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L 591 (783)
++++|+.|++|+|.|...-++.+.-+++|++|+|++|+++..-++.|..+..|++|+|++|.+...-...| .+++|++|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 67777777777777776666666667777777777777776666666667777777777777664444445 66777777
Q ss_pred EccCCcccccCch---hhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035 592 YLQNNALSGQIPS---TLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666 (783)
Q Consensus 592 ~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 666 (783)
||++|.+++.|.+ .|.++++|+.|+|.+|++...--..|.++++|+.|||.+|.+...-|..|..+ .|+.|-+.
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 7777776655543 34556677777777777654333466677777777777777766666666666 66666554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-36 Score=326.12 Aligned_cols=505 Identities=27% Similarity=0.325 Sum_probs=287.4
Q ss_pred EeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeC
Q 047035 79 LDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNL 158 (783)
Q Consensus 79 L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L 158 (783)
+|++.+.+.-. | ..+-.-..++.|+++.|.+-..+.+++.+..+|+.||+++|++... |. .+..+.+|+.|++
T Consensus 3 vd~s~~~l~~i-p----~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~-~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLELI-P----EQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PI-QITLLSHLRQLNL 75 (1081)
T ss_pred cccccccCccc-c----hhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-Cc-hhhhHHHHhhccc
Confidence 45555555432 2 2233334477777777766544455555566677777777766554 43 4666667777777
Q ss_pred CCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccc
Q 047035 159 SWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG 238 (783)
Q Consensus 159 ~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 238 (783)
+.|.+...+. ...++.+|++|.|..|.+...+..+..+++|++|+++.|.+. .+| ..+..+..++.+..++|....
T Consensus 76 s~n~i~~vp~--s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 76 SRNYIRSVPS--SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred chhhHhhCch--hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhh
Confidence 7776666553 566666777777766666655556666666666666666664 444 445555666666666662211
Q ss_pred cCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCC
Q 047035 239 QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWI 318 (783)
Q Consensus 239 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 318 (783)
. ++... ++.+++..|.+.+.++..+..++. .|+|++|.+. ... +..+++|+.
T Consensus 152 ~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~----------------- 203 (1081)
T KOG0618|consen 152 R----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEV----------------- 203 (1081)
T ss_pred h----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhh-----------------
Confidence 1 11111 555556666555555555555544 5566665543 111 223333332
Q ss_pred CCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEE
Q 047035 319 PTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHL 398 (783)
Q Consensus 319 ~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 398 (783)
+....|++.. +- -..++++.|+.++|.++.. .......+|+++
T Consensus 204 ------------------------------l~c~rn~ls~-l~----~~g~~l~~L~a~~n~l~~~--~~~p~p~nl~~~ 246 (1081)
T KOG0618|consen 204 ------------------------------LHCERNQLSE-LE----ISGPSLTALYADHNPLTTL--DVHPVPLNLQYL 246 (1081)
T ss_pred ------------------------------hhhhhcccce-EE----ecCcchheeeeccCcceee--ccccccccceee
Confidence 2222222220 00 0235566666666666533 223334566777
Q ss_pred EcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcc
Q 047035 399 DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN 478 (783)
Q Consensus 399 ~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 478 (783)
+++.|+++ .+|.+++ .+.+|+.++..+|+++ .+|..+....+|+.|++..|++. .+|.. .....+|++|+|..|+
T Consensus 247 dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~-le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 247 DISHNNLS-NLPEWIG-ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPF-LEGLKSLRTLDLQSNN 321 (1081)
T ss_pred ecchhhhh-cchHHHH-hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCc-ccccceeeeeeehhcc
Confidence 77777776 5665554 5677777777777774 66666666677777777777765 45543 2456677777777776
Q ss_pred ccccCCCcccCCC-CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcc
Q 047035 479 FYGHIFPTYMNLT-QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPV 557 (783)
Q Consensus 479 l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 557 (783)
+....+..+.-.. +|+.|+.+.|++.......=...+.|+.|++.+|.++...-+.+.+..+|++|+|++|++......
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 6543322222222 255566666665532211112344566667777776666555666666777777777766644344
Q ss_pred cccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC-CchhccCCcC
Q 047035 558 QINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR-IPDQINNHSE 635 (783)
Q Consensus 558 ~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~ 635 (783)
.+.++..|++|+||+|+++ .+|... ++..|++|...+|.+. ..| .+.+++.|+.+|+|.|.++.. +|.... .++
T Consensus 402 ~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~ 477 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPN 477 (1081)
T ss_pred HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccc
Confidence 5566666777777777765 455555 6666777777777666 566 566677777777777776543 333222 267
Q ss_pred CCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035 636 LRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668 (783)
Q Consensus 636 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 668 (783)
|++||+++|.-....-..|..++++...++.-|
T Consensus 478 LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 478 LKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 777777777533233444555556665555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9e-36 Score=321.61 Aligned_cols=491 Identities=27% Similarity=0.345 Sum_probs=340.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035 70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN 149 (783)
Q Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 149 (783)
+.....++.|+++.|.+-..+- +.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|... |. ...+
T Consensus 17 i~~~~~~~~ln~~~N~~l~~pl----~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~v-p~-s~~~ 89 (1081)
T KOG0618|consen 17 ILNNEALQILNLRRNSLLSRPL----EFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSV-PS-SCSN 89 (1081)
T ss_pred hccHHHHHhhhccccccccCch----HHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhC-ch-hhhh
Confidence 3344459999999997765443 56666777999999999986 5678899999999999999999886 53 7999
Q ss_pred CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035 150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 229 (783)
+.+|+++.|..|.+...+. .+..+++|++|++++|.+...+..+..+..++.+..++|... ..++... .+.+
T Consensus 90 ~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~~~-ik~~ 161 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI-----QRLGQTS-IKKL 161 (1081)
T ss_pred hhcchhheeccchhhcCch--hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh-----hhhcccc-chhh
Confidence 9999999999999988765 789999999999999999877778899999999999999332 1233333 8899
Q ss_pred EccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309 (783)
Q Consensus 230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~ 309 (783)
++..|.+.+.++..+..++. .|++.+|.+. . ..+.++.+|+.|....|++. .+. -.-++++.
T Consensus 162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~-------- 223 (1081)
T KOG0618|consen 162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-ELE----ISGPSLTA-------- 223 (1081)
T ss_pred hhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-eEE----ecCcchhe--------
Confidence 99999999988888888777 7999999987 2 35678899999999888776 221 12234444
Q ss_pred cccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCc
Q 047035 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK 389 (783)
Q Consensus 310 ~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 389 (783)
|+.++|.+..+- ......+++++++++|++. .+|.|+. .+++|+.+...+|.++..+ ...
T Consensus 224 ----------------L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp~wi~-~~~nle~l~~n~N~l~~lp-~ri 283 (1081)
T KOG0618|consen 224 ----------------LYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLPEWIG-ACANLEALNANHNRLVALP-LRI 283 (1081)
T ss_pred ----------------eeeccCcceeec-cccccccceeeecchhhhh-cchHHHH-hcccceEecccchhHHhhH-HHH
Confidence 444555444111 1122347888899998888 6777776 7888888888888886542 223
Q ss_pred cCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCcc-ccCCCC-CCeeeccCCcCccccChhhhhcCC
Q 047035 390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYS-IGEMKE-LFLLDLSRNKFSGDLSATSVIRCA 467 (783)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~-L~~L~L~~n~l~~~i~~~~~~~l~ 467 (783)
...++|+.|.+..|.+. .+|.... ..++|+.|+|..|++. ..|+. +.-... |..+..+.|++. ..|...-...+
T Consensus 284 ~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHA 359 (1081)
T ss_pred hhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhH
Confidence 55666777777777776 5555543 4667777777777776 34432 222222 555666666665 33432223445
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 547 (783)
.|+.|.+.+|.+++...+.+.+.+.|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+.++..|++|...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 6777777777777766666677777777777777766444444566667777777777776 566667777777777777
Q ss_pred CCcccccCcccccCCCCCCEEeCCCccccc-ccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
+|++. ..| .+..+++|+.+|++.|+++. .+|....-++|++||+++|.-...--..|..+..+...++.-+
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 77766 555 56677777777777777654 2333333366677777666533233344445555555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.1e-32 Score=279.35 Aligned_cols=364 Identities=26% Similarity=0.387 Sum_probs=227.7
Q ss_pred CCCCcEEEccCcccc-ccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcE
Q 047035 223 LKNLTELDLGENNLE-GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301 (783)
Q Consensus 223 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~ 301 (783)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+.+|++.. +. ..+..++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vh-GELs~Lp---- 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VH-GELSDLP---- 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hh-hhhccch----
Confidence 455667788888887 467888888888888888888887 788888888888888888888762 22 1233344
Q ss_pred EEeccCcccccCCCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCc
Q 047035 302 LLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNN 379 (783)
Q Consensus 302 L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n 379 (783)
.|+.+.+..|+++ .||..++.+..|+.|||++|++. ++|..+- ...++-.|+|++|
T Consensus 79 --------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 79 --------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN 136 (1255)
T ss_pred --------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence 3444455666665 67888888888888888888877 5666543 3344444444444
Q ss_pred cccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 047035 380 SFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLS 459 (783)
Q Consensus 380 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~ 459 (783)
+|. .||..++.++..|-+|||++|.+. .+|..+..+..|+.|+|++|.+. ...
T Consensus 137 ~Ie-------------------------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQ 189 (1255)
T KOG0444|consen 137 NIE-------------------------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQ 189 (1255)
T ss_pred ccc-------------------------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHH
Confidence 444 455555555556666666666665 45555566666666666666553 222
Q ss_pred hhhhhcCCCCcEEECcCcccc-ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCC
Q 047035 460 ATSVIRCASLEYLDVSENNFY-GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNF 538 (783)
Q Consensus 460 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l 538 (783)
...+..+++|+.|.+++.+-+ ..+|.++..+.+|+.++++.|.+. ..|..+.++++|+.|+||+|+++ ......+.-
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W 267 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEW 267 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHH
Confidence 222233445555555554332 335555666666666666666665 55666666666666666666665 233333444
Q ss_pred CCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035 539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD 616 (783)
Q Consensus 539 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 616 (783)
.+|++|+++.|+++ .+|.+++.+++|+.|.+.+|++.- -+|..+ .+..|+.+...+|++. .+|.++..|..|+.|.
T Consensus 268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLK 345 (1255)
T ss_pred hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhc
Confidence 55666666666666 566666666666666666666532 345555 5666666666666665 6677777777777777
Q ss_pred CcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035 617 LRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 617 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
|++|++. .+|+.|.-++.|+.||++.|.-.
T Consensus 346 L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 346 LDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cccccee-echhhhhhcCCcceeeccCCcCc
Confidence 7777664 56677777777777777766543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.6e-32 Score=280.48 Aligned_cols=365 Identities=25% Similarity=0.355 Sum_probs=306.2
Q ss_pred CCCCCEEeCcCCccce-ecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEE
Q 047035 271 LTSLEYLALSDNNFQG-EFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFL 349 (783)
Q Consensus 271 l~~L~~L~L~~n~l~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L 349 (783)
++-.+-.++++|.+.| .+|.+ ... +++++.|.|...++..+|..++.+.+|++|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~-v~q------------------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHL 60 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHD-VEQ------------------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHL 60 (1255)
T ss_pred cceeecccccCCcCCCCcCchh-HHH------------------------hhheeEEEechhhhhhChHHHHHHhhhhhh
Confidence 4556677888888874 44432 333 445666777788888999999999999999
Q ss_pred EccCCcccCCCChhhhhcCCCCcEEEccCccccCccc-CCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCC
Q 047035 350 DLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ-LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428 (783)
Q Consensus 350 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n 428 (783)
.+++|++.. +-..+ ..++.|+.+.+.+|++..... .....+..|+.||+++|++. ++|..+. ..+++-.|+|++|
T Consensus 61 s~~HN~L~~-vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn~iVLNLS~N 136 (1255)
T KOG0444|consen 61 SMAHNQLIS-VHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKNSIVLNLSYN 136 (1255)
T ss_pred hhhhhhhHh-hhhhh-ccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcCcEEEEcccC
Confidence 999998873 22222 368899999999998865431 22367889999999999998 8898885 6789999999999
Q ss_pred cccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc-ccc
Q 047035 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT-GKI 507 (783)
Q Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 507 (783)
+|..+....|.+++.|-.|||++|++. .+|+.. ..+..|++|++++|.+.-.....+..+++|++|.+++.+-+ ..+
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC
Confidence 998443345678999999999999997 777764 68899999999999887555555667889999999987644 357
Q ss_pred ccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcC
Q 047035 508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLS 586 (783)
Q Consensus 508 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~ 586 (783)
|.++..+.+|..+|+|.|.+. ..|+.+.++++|+.|+|++|+|+ .+..+.+...+|++|++|+|+++ .+|+.+ .++
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~ 291 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT 291 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH
Confidence 888999999999999999998 89999999999999999999998 66667778889999999999998 788888 999
Q ss_pred CCcEEEccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEec
Q 047035 587 SIMHLYLQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665 (783)
Q Consensus 587 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 665 (783)
.|+.|++.+|+++ .-||++++.+..|+++..++|++ ...|+.+..+..|+.|.|++|++. .+|+.|.-|+.|+.||+
T Consensus 292 kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L-ElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 292 KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL-ELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDL 369 (1255)
T ss_pred HHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc-ccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeec
Confidence 9999999999986 35899999999999999999998 589999999999999999999998 78999999999999999
Q ss_pred CCCcCc
Q 047035 666 SHNKLN 671 (783)
Q Consensus 666 s~N~l~ 671 (783)
..|+=-
T Consensus 370 reNpnL 375 (1255)
T KOG0444|consen 370 RENPNL 375 (1255)
T ss_pred cCCcCc
Confidence 999754
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.6e-23 Score=248.66 Aligned_cols=306 Identities=20% Similarity=0.225 Sum_probs=138.5
Q ss_pred CCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeC
Q 047035 346 FKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDI 425 (783)
Q Consensus 346 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L 425 (783)
|+.|.+.++.+. .+|..+ ...+|++|++.+|.+.... .....+++|+.|+++++...+.+|. + ..+++|++|++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L 664 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKL 664 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccc-cccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEe
Confidence 444444444443 333332 2344444555444444332 1123344455555554433334443 1 13445555555
Q ss_pred CCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc
Q 047035 426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG 505 (783)
Q Consensus 426 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 505 (783)
++|.....+|..+..+++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|+.|++++|.+.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE- 738 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence 5544444445555555555555555544333444322 3445555555555433333321 234455555555543
Q ss_pred ccccccccCCCCcEEEccCCccc-------ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035 506 KIKAGLLNSHGLVVLDISNNLLS-------GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578 (783)
Q Consensus 506 ~~~~~l~~~~~L~~L~Ls~n~l~-------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 578 (783)
.+|..+ .+++|+.|++.++... ...|......++|+.|++++|...+.+|..++++++|+.|++++|...+.
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 233322 2444444444442211 01111112234455555555554445555555555555555555544444
Q ss_pred cccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC
Q 047035 579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ 658 (783)
Q Consensus 579 ~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 658 (783)
+|...++++|+.|++++|.....+|.. .++|+.|+|++|.+. .+|.++..+++|+.|++++|+-...+|..+..++
T Consensus 818 LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 818 LPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred eCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 554445555555555555443334332 234555555555553 3455555555555555555433334444555555
Q ss_pred CCCEEecCCC
Q 047035 659 KLGILDLSHN 668 (783)
Q Consensus 659 ~L~~L~ls~N 668 (783)
+|+.+++++|
T Consensus 894 ~L~~L~l~~C 903 (1153)
T PLN03210 894 HLETVDFSDC 903 (1153)
T ss_pred CCCeeecCCC
Confidence 5555555555
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=5.1e-22 Score=241.45 Aligned_cols=307 Identities=20% Similarity=0.214 Sum_probs=211.3
Q ss_pred cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccc-cCcccCCccCCCCccEEEc
Q 047035 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF-SGILQLPKVKHDLLRHLDI 400 (783)
Q Consensus 322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~L 400 (783)
+|+.|.+.++.++.+|..+ ...+|+.|++.++.+. .++..+ ..+++|+.|+++++.. ..++ .+..+++|+.|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEe
Confidence 4666666666666666654 3456667777666655 344433 2566677777766542 2221 2355667777777
Q ss_pred ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480 (783)
Q Consensus 401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 480 (783)
++|.....+|..+. .+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|. ...+|++|++++|.+.
T Consensus 665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE 738 (1153)
T ss_pred cCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc
Confidence 77766566776664 57777777777776555666554 677777777777765545543 2356777778777765
Q ss_pred ccCCCcccCCCCccEEEccCcccc-------cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccc
Q 047035 481 GHIFPTYMNLTQLRWLYLKNNHFT-------GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEG 553 (783)
Q Consensus 481 ~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 553 (783)
. +|..+ .+++|+.|.+.++... ...+..+..+++|+.|++++|...+.+|.+++++++|+.|++++|...+
T Consensus 739 ~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 739 E-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred c-ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 3 44433 4667777777664321 1112223345688888888888777888888888888899888887666
Q ss_pred cCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCC
Q 047035 554 NIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNH 633 (783)
Q Consensus 554 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 633 (783)
.+|..+ ++++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+-...+|..+..+
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 777765 6888888999888766566554 467888899988887 788888888899999998876666788888888
Q ss_pred cCCCEEeCcCCc
Q 047035 634 SELRVLLLRGNY 645 (783)
Q Consensus 634 ~~L~~L~L~~N~ 645 (783)
+.|+.+++++|.
T Consensus 893 ~~L~~L~l~~C~ 904 (1153)
T PLN03210 893 KHLETVDFSDCG 904 (1153)
T ss_pred cCCCeeecCCCc
Confidence 888888888885
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=6.1e-25 Score=216.55 Aligned_cols=287 Identities=20% Similarity=0.160 Sum_probs=199.2
Q ss_pred CCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEccc-ccCCccCchhhcCCCCCCEEe
Q 047035 200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISF-NHLSGNLPSVIANLTSLEYLA 278 (783)
Q Consensus 200 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 278 (783)
.-..++|..|+|+ .+|+.+|..+++|+.|||+.|.|+.+-|.+|..+.+|..|-+.+ |+|+...-..|+++..|+.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567778888876 67777788888888888888888877778888887777766665 777755556777788888888
Q ss_pred CcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCC---ccChhhhcCCCCCEEEccCCc
Q 047035 279 LSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK---VIPSFLLHQYDFKFLDLSSNK 355 (783)
Q Consensus 279 L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~---~ip~~l~~~~~L~~L~Ls~n~ 355 (783)
+.-|++. .++...+..++++..|.+.+|.+..+....+.++..++.+.+..|.+. .+|- + .. ++.
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w-l------a~-~~a--- 214 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW-L------AD-DLA--- 214 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch-h------hh-HHh---
Confidence 8777776 666677777777777777777777777667777777777776666532 1110 0 00 000
Q ss_pred ccCCCChhhhhcCCCCcEEEccCccccCcccCCcc-CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccC
Q 047035 356 LVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV-KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNI 434 (783)
Q Consensus 356 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 434 (783)
..|..+ +...-..-..+.+.++..+....+. ....+..--.+.+...+..|...+..+++|++|++++|++++.-
T Consensus 215 ---~~~iet-sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 215 ---MNPIET-SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred ---hchhhc-ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 011111 1122222233334444333222221 11122222233444555778888888999999999999999888
Q ss_pred CccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035 435 PYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504 (783)
Q Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (783)
+.+|.+...+++|.|..|++. .+...+|.++..|+.|+|.+|+++...|.+|..+.+|.+|++-.|++-
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 899999999999999999997 778888899999999999999999988999999999999999888763
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-24 Score=212.22 Aligned_cols=288 Identities=20% Similarity=0.140 Sum_probs=175.6
Q ss_pred CCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccC-ccCcccCCcccccCCCCCcEEE
Q 047035 153 LKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRN-NLLNGSVESKGICELKNLTELD 230 (783)
Q Consensus 153 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~L~ 230 (783)
-..++|..|+|+.+++. .|+.+++|+.|||++|.|+.+.+ +|..+++|..|-+.+ |+|+ .++...|+++..|+.|.
T Consensus 69 tveirLdqN~I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence 44566666666666553 56666666666666666665555 566666655555554 4554 45555566666666666
Q ss_pred ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310 (783)
Q Consensus 231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~ 310 (783)
+.-|++.-...+.|..+++|..|.+.+|.+...--..|..+..++.+.+..|.+.. ..+++.+... .
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~-------~ 213 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADD-------L 213 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc------ccccchhhhH-------H
Confidence 66665555555555666666666666665552222255555555555555554321 1111111110 0
Q ss_pred ccCCCCCCCCccccEEeCCCCCCCccChhhhcC--CCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQ--YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP 388 (783)
Q Consensus 311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 388 (783)
......+.+.....-..+.+.++.++++.-..+ ..+..--.+.+...+.-|...+..+++|++|+|++|.++.+....
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a 293 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA 293 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence 011111112111222222233333332211111 122222223344445677777889999999999999999998888
Q ss_pred ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 047035 389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG 456 (783)
Q Consensus 389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (783)
|.....+++|.+..|++. .+...++..+..|+.|+|.+|+|+...|.+|..+..|..|.+-.|.+..
T Consensus 294 Fe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 888999999999999997 7777888889999999999999999999999999999999998887753
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.1e-21 Score=217.13 Aligned_cols=268 Identities=25% Similarity=0.302 Sum_probs=155.9
Q ss_pred CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEe
Q 047035 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID 424 (783)
Q Consensus 345 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 424 (783)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++.++. ..++|++|++++|+++ .+|. .+++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccC----cccccceee
Confidence 3456677777666 5665443 356666666666655432 1345555555555555 3342 123455555
Q ss_pred CCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035 425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504 (783)
Q Consensus 425 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (783)
+++|.+. .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|.++
T Consensus 269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----------------------------~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----------------------------LPPGLQELSVSDNQLA 315 (788)
T ss_pred ccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----------------------------cccccceeECCCCccc
Confidence 5555544 22321 133444445554444 2332 1234555555555554
Q ss_pred cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584 (783)
Q Consensus 505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 584 (783)
+ +|.. ...|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|++.. +|..
T Consensus 316 ~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 316 S-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence 3 2221 1245555555555552 3321 135666666666666 34432 2356666777777663 4443
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEe
Q 047035 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILD 664 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 664 (783)
..+|+.|++++|+++ .+|.. .++|+.|++++|++.+ +|... .+|+.|++++|+++ .+|..++++++|+.|+
T Consensus 381 ~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVN 451 (788)
T ss_pred ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEE
Confidence 346777777777777 45543 2568888888888864 66543 46778889999887 6888888899999999
Q ss_pred cCCCcCcccCCcchhhcc
Q 047035 665 LSHNKLNGSIPSCFVNML 682 (783)
Q Consensus 665 ls~N~l~g~iP~~~~~~~ 682 (783)
+++|+|+|.+|..+.+++
T Consensus 452 Ls~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 452 LEGNPLSERTLQALREIT 469 (788)
T ss_pred CCCCCCCchHHHHHHHHh
Confidence 999999998888886664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=9.5e-21 Score=213.24 Aligned_cols=263 Identities=26% Similarity=0.301 Sum_probs=167.0
Q ss_pred ccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEccc
Q 047035 323 LKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISN 402 (783)
Q Consensus 323 L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 402 (783)
-..|+++.+.++.+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++.++.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc----ccccceeeccC
Confidence 4567888888888887665 37888888888887 4664 357899999999988876432 46788999999
Q ss_pred CcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccccc
Q 047035 403 NNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH 482 (783)
Q Consensus 403 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 482 (783)
|.+. .+|. .+++|+.|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ..+|+.|++++|++.+
T Consensus 272 N~L~-~Lp~----lp~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 272 NPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS- 336 (788)
T ss_pred Cchh-hhhh----chhhcCEEECcCCccc-ccccc---ccccceeECCCCccc-cCCCC----cccccccccccCcccc-
Confidence 9887 5554 2357888999999887 45542 467899999999887 45541 2457778888887764
Q ss_pred CCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCC
Q 047035 483 IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF 562 (783)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 562 (783)
+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|++++ +|.. .
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 3321 2467777777777763 4432 3456666777776663 4432 2346666666666652 4432 1
Q ss_pred CCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035 563 RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630 (783)
Q Consensus 563 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 630 (783)
++|+.|++++|++++ +|.. +.+|+.|++++|+++ .+|..+.+++.|+.|+|++|++++..|..+
T Consensus 402 s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 345556666665543 3332 233445555555554 455555555555555555555555444433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.4e-19 Score=201.42 Aligned_cols=222 Identities=24% Similarity=0.381 Sum_probs=112.6
Q ss_pred CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449 (783)
Q Consensus 370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 449 (783)
+...|+++++.++.++. .-.+.++.|++++|+++ .+|..++ ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~LtsLP~---~Ip~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CIPEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCCc---ccccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45667777776665432 12345777777777776 5665543 46777777777766 4454432 35666777
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 529 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 529 (783)
++|.+. .+|.... .+|+.|++++|++.. +|..+. ++|+.|++++|.+++ +|..+ .++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCcccc
Confidence 776665 5555432 356666666666653 343332 356666666666553 33322 1345555555555552
Q ss_pred cCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcC
Q 047035 530 HIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS 609 (783)
Q Consensus 530 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 609 (783)
+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+ .++|++|+|++|+++ .+|..+.
T Consensus 319 -LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 -LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred -CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCC-CCCHhHH--
Confidence 333221 345555555555542 343332 34555555555443 233222 234444444444444 3333332
Q ss_pred CCCcEEECcCCcc
Q 047035 610 TELLTLDLRDNKF 622 (783)
Q Consensus 610 ~~L~~L~Ls~N~l 622 (783)
..|+.|++++|++
T Consensus 388 ~sL~~LdLs~N~L 400 (754)
T PRK15370 388 AALQIMQASRNNL 400 (754)
T ss_pred HHHHHHhhccCCc
Confidence 1344444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.5e-19 Score=203.34 Aligned_cols=292 Identities=22% Similarity=0.344 Sum_probs=155.9
Q ss_pred cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcc
Q 047035 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401 (783)
Q Consensus 322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 401 (783)
+...|++++++++.+|..+. +.++.|++++|++. .+|..+. ++|++|++++|.++.++ ..-...|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP---~~l~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIP---ATLPDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCC---hhhhccccEEECc
Confidence 45567777777766665442 35666666666666 4554432 35566666655555432 1112345555555
Q ss_pred cCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481 (783)
Q Consensus 402 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 481 (783)
+|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|++++
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~---------------------------~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP---------------------------EELRYLSVYDNSIRT 297 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC---------------------------CCCcEEECCCCcccc
Confidence 55554 4444332 34455555555444 2333322 245555555554443
Q ss_pred cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccC
Q 047035 482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561 (783)
Q Consensus 482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 561 (783)
+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 298 -LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 298 -LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred -Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 222221 245555555555553 33322 2456666666666653 444442 46677777777666 4555442
Q ss_pred CCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhh----cCCCCcEEECcCCccccCCchhccCCcCCC
Q 047035 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLF----RSTELLTLDLRDNKFFGRIPDQINNHSELR 637 (783)
Q Consensus 562 l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 637 (783)
++|+.|++++|+++ .+|..+ ...|+.|++++|+++ .+|..+. .++.+..|++.+|.++. ..+++|+
T Consensus 367 -~~L~~LdLs~N~Lt-~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~ 436 (754)
T PRK15370 367 -PTITTLDVSRNALT-NLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQ 436 (754)
T ss_pred -CCcCEEECCCCcCC-CCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHH
Confidence 46777777777776 344433 235777777777776 5555443 34677888888888752 2334445
Q ss_pred EEeCcCCccccc-CCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 638 VLLLRGNYLQGQ-IPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 638 ~L~L~~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
.| ++.+.+.|. ++...+.++.++....-.+...+.+|.
T Consensus 437 ~L-l~s~~~~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~~ 475 (754)
T PRK15370 437 RL-MSSVGYQGPRVLFAMGDFSIVRVTRPLHQAVQGWLTN 475 (754)
T ss_pred Hh-hhcccccCCcccccccccccccccchHHHHHhccCCc
Confidence 55 344544433 344555566666554455555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.1e-19 Score=190.41 Aligned_cols=255 Identities=23% Similarity=0.238 Sum_probs=132.5
Q ss_pred hcCCceEEeCCCCccccc----CCccccCCCCCCeeeccCCcCcc--c---cChhhhhcCCCCcEEECcCccccccCCCc
Q 047035 416 VIQKLMYIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSG--D---LSATSVIRCASLEYLDVSENNFYGHIFPT 486 (783)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~--~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 486 (783)
.++.|++++++++.+++. ++..+...+++++++++++.+.+ . .....+..+++|++|++++|.+.+..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 344455555555554321 23334444555555555554431 0 00112334556666666666655433333
Q ss_pred ccCCC---CccEEEccCccccc----ccccccccC-CCCcEEEccCCccccc----CCCCcCCCCCCcEEECCCCccccc
Q 047035 487 YMNLT---QLRWLYLKNNHFTG----KIKAGLLNS-HGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEGN 554 (783)
Q Consensus 487 ~~~l~---~L~~L~L~~n~l~~----~~~~~l~~~-~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 554 (783)
+..+. +|++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.+++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 33333 26666666666552 122233344 5666666666666532 233344555666666666666532
Q ss_pred ----CcccccCCCCCCEEeCCCccccccc----cccc-CcCCCcEEEccCCcccccCchhhhc-----CCCCcEEECcCC
Q 047035 555 ----IPVQINNFRQLQLLDLSENRLFGSI----ASSL-NLSSIMHLYLQNNALSGQIPSTLFR-----STELLTLDLRDN 620 (783)
Q Consensus 555 ----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N 620 (783)
++..+..+++|++|++++|.+.+.. +..+ .+++|++|++++|.+++.....+.. .+.|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 2333444556777777776665322 2223 4566667777766665432222221 256777777777
Q ss_pred cccc----CCchhccCCcCCCEEeCcCCccccc----CCcchhCC-CCCCEEecCCCcC
Q 047035 621 KFFG----RIPDQINNHSELRVLLLRGNYLQGQ----IPIALCQL-QKLGILDLSHNKL 670 (783)
Q Consensus 621 ~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l 670 (783)
.++. .+++.+..+++|+.+++++|.++.. +...+... +.|+.+|+.+|++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 7652 2334455556777777777777643 33334444 5677777777654
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-19 Score=155.07 Aligned_cols=184 Identities=28% Similarity=0.491 Sum_probs=141.6
Q ss_pred ccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ 566 (783)
Q Consensus 487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 566 (783)
+..+...+.|.+++|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445667778888888887 56666788888888888888887 67888888888999998888887 7888899999999
Q ss_pred EEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035 567 LLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644 (783)
Q Consensus 567 ~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 644 (783)
+||+.+|++.. .+|..| .++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99998888864 567666 7788888888888887 77777888888888888888775 57788888888888888888
Q ss_pred cccccCCcchhCCCCC---CEEecCCCcCcccCCc
Q 047035 645 YLQGQIPIALCQLQKL---GILDLSHNKLNGSIPS 676 (783)
Q Consensus 645 ~l~~~~p~~l~~l~~L---~~L~ls~N~l~g~iP~ 676 (783)
+++ .+|++++++.-+ +.+.+.+|++...|-.
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 887 667676665322 3455566666555544
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.1e-18 Score=180.49 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=185.3
Q ss_pred EEeCCCCccc-ccCCccccCCCCCCeeeccCCcCccc----cChhhhhcCCCCcEEECcCccccc------cCCCcccCC
Q 047035 422 YIDISKNNFE-GNIPYSIGEMKELFLLDLSRNKFSGD----LSATSVIRCASLEYLDVSENNFYG------HIFPTYMNL 490 (783)
Q Consensus 422 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l 490 (783)
.|+|..+.++ +.....+..+..|+.+++++|.++.. ++ ..+...+.+++++++++.+.+ .++..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 3566666666 34445566778899999999998532 22 234566789999999988762 223456678
Q ss_pred CCccEEEccCcccccccccccccCCC---CcEEEccCCcccc----cCCCCcCCC-CCCcEEECCCCccccc----Cccc
Q 047035 491 TQLRWLYLKNNHFTGKIKAGLLNSHG---LVVLDISNNLLSG----HIPCWIGNF-SYLDVLLMSKNHLEGN----IPVQ 558 (783)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~~l~~~~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~ 558 (783)
++|+.|++++|.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 89999999999998666665555555 9999999999873 333445566 8999999999999843 4455
Q ss_pred ccCCCCCCEEeCCCcccccc----ccccc-CcCCCcEEEccCCccccc----CchhhhcCCCCcEEECcCCccccCCchh
Q 047035 559 INNFRQLQLLDLSENRLFGS----IASSL-NLSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQ 629 (783)
Q Consensus 559 ~~~l~~L~~L~Ls~N~l~~~----~p~~~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 629 (783)
+..+++|++|++++|.+.+. ++..+ .+++|++|++++|.+++. ++..+..+++|++|++++|++.+..+..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 67778999999999998752 23333 567999999999998743 3455667889999999999987643333
Q ss_pred cc-----CCcCCCEEeCcCCccc----ccCCcchhCCCCCCEEecCCCcCcc
Q 047035 630 IN-----NHSELRVLLLRGNYLQ----GQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 630 l~-----~l~~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
+. ..+.|+.|++++|.++ ..++..+..++.|+.+|+++|+++.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 32 2479999999999987 2344556777899999999999974
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1e-18 Score=153.09 Aligned_cols=166 Identities=30% Similarity=0.502 Sum_probs=153.2
Q ss_pred cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCc
Q 047035 511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM 589 (783)
Q Consensus 511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~ 589 (783)
+.++...+.|.+|+|+++ .+|..++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. ..|..| .++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778899999999999 67778999999999999999998 88999999999999999999987 678888 999999
Q ss_pred EEEccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035 590 HLYLQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668 (783)
Q Consensus 590 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 668 (783)
.|||.+|++. ..+|..|..++.|+.|.|+.|.+ ..+|..++++++|++|.++.|.+. ++|.+++.++.|+.|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999999986 46899999999999999999999 578999999999999999999998 78999999999999999999
Q ss_pred cCcccCCcchhhcc
Q 047035 669 KLNGSIPSCFVNML 682 (783)
Q Consensus 669 ~l~g~iP~~~~~~~ 682 (783)
+++ .+|+.++++.
T Consensus 184 rl~-vlppel~~l~ 196 (264)
T KOG0617|consen 184 RLT-VLPPELANLD 196 (264)
T ss_pred eee-ecChhhhhhh
Confidence 998 7899998875
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=5.9e-13 Score=138.51 Aligned_cols=196 Identities=29% Similarity=0.386 Sum_probs=156.0
Q ss_pred CCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcE
Q 047035 440 EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVV 519 (783)
Q Consensus 440 ~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 519 (783)
.+.--...|++.|++. ++|..+ ..+..|+.+.+..|.+.. +|.++.++..|+.++|+.|+++ .+|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 4555567889999987 788764 467788888888888864 6778888999999999999987 5677777665 889
Q ss_pred EEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCccc
Q 047035 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALS 599 (783)
Q Consensus 520 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~ 599 (783)
|-+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.. +|+.+..-.|..||++.|+++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLPLIRLDFSCNKIS 224 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCceeeeecccCcee
Confidence 999999988 78888888888999999999987 778888889999999999998874 444443455888999999988
Q ss_pred ccCchhhhcCCCCcEEECcCCccccCCchhc---cCCcCCCEEeCcCCc
Q 047035 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQI---NNHSELRVLLLRGNY 645 (783)
Q Consensus 600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~ 645 (783)
.+|-.|.+++.|++|-|.+|.+. ..|..+ +...-.++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88989999999999999999885 455544 445566778887774
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.3e-11 Score=132.61 Aligned_cols=179 Identities=34% Similarity=0.435 Sum_probs=111.6
Q ss_pred CCccEEEccCcccccccccccccCC-CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEe
Q 047035 491 TQLRWLYLKNNHFTGKIKAGLLNSH-GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLD 569 (783)
Q Consensus 491 ~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 569 (783)
+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..++.+++|+.|++++|+++ .+|......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 44555555555554 2333333332 5666666666655 34445566666666666666666 4444444566666677
Q ss_pred CCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 570 LSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 570 Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
+++|++. .+|... ....|+++.+++|++. ..+..+.++..+..+.+.+|++.. +|..++.+++++.|++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-
Confidence 7776665 444443 3444777777777544 466667777777777777777643 3667777777888888888777
Q ss_pred cCCcchhCCCCCCEEecCCCcCcccCCcc
Q 047035 649 QIPIALCQLQKLGILDLSHNKLNGSIPSC 677 (783)
Q Consensus 649 ~~p~~l~~l~~L~~L~ls~N~l~g~iP~~ 677 (783)
.++. ++.+.+++.||+++|.++..+|..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhh
Confidence 3333 777788888888888777666653
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=1e-12 Score=136.70 Aligned_cols=194 Identities=30% Similarity=0.441 Sum_probs=151.2
Q ss_pred CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEE
Q 047035 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545 (783)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 545 (783)
+.--...|++.|++.. +|..+..+-.|+.+.+..|.+. .+|..++++..|+++||+.|+++ ..|..++.++ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 4445667888888864 6777777888888888888887 67888888889999999999988 7777788776 88888
Q ss_pred CCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624 (783)
Q Consensus 546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 624 (783)
+++|+++ .+|+.++....|..||.+.|.+.. +|..+ ++.+|+.|.+..|++. .+|..+. .-.|..||+|+|+++
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 9988887 778888888888888998888874 44444 8888888888888887 6777777 445888888888885
Q ss_pred CCchhccCCcCCCEEeCcCCcccccCCcchhCCCC---CCEEecCCCc
Q 047035 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK---LGILDLSHNK 669 (783)
Q Consensus 625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~ls~N~ 669 (783)
.+|-.|.++..|++|-|.+|.+. +.|..++-.-. -++|+..-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 68888888888888888888887 56666654333 3456666664
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=8.3e-11 Score=133.96 Aligned_cols=111 Identities=32% Similarity=0.491 Sum_probs=70.4
Q ss_pred CCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcC
Q 047035 565 LQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRG 643 (783)
Q Consensus 565 L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 643 (783)
++.|+|++|.+.|.+|..+ .+++|+.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|+.++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4555566666655555555 556666666666666666666666666666666666666666666666666666666666
Q ss_pred CcccccCCcchhCC-CCCCEEecCCCcCcccCC
Q 047035 644 NYLQGQIPIALCQL-QKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 644 N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP 675 (783)
|+++|.+|..++.+ .++..+++.+|+..+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 66666666666543 345566777776555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.2e-12 Score=127.19 Aligned_cols=209 Identities=28% Similarity=0.313 Sum_probs=91.2
Q ss_pred CCCCCCEEeCCCCCCCCCCc-ccccCCCCCCEEEccCCcCCCCCCc-hhccCCCCCCeEeCCCCCCCCCcCccccCCCCC
Q 047035 100 SSKKLKILNLNYNNFNDSVL-PYLNTLTSLTTLNLYYNRIGGLNPS-QGLANLRNLKALNLSWNGISSGATRLGLGNLTN 177 (783)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 177 (783)
++++|+...|.++.+..... .....|++++.|||++|-+....+. +....+++|+.|+++.|++........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34445555555444432111 2344455555555555444332211 122345555555555554443322212223455
Q ss_pred CCEEECcCCcCccc-CC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC-CccccCCCCCCEEE
Q 047035 178 LEVLDLSANRISGS-LT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL-PWCLSDLIGLKVLD 254 (783)
Q Consensus 178 L~~L~Ls~n~~~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 254 (783)
|+.|.|+.|.++.. +. .+..+++|+.|++..|... .+......-+..|++|||++|.+...- -...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555421 11 2334555555555555311 111122333455555555555544211 12344555555555
Q ss_pred cccccCCcc-Cchh-----hcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035 255 ISFNHLSGN-LPSV-----IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309 (783)
Q Consensus 255 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~ 309 (783)
++.+.+... .|+. ...+++|++|++..|++...-....+..+++|+.|.+..+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 555555421 1221 234566666666666664211222334455555555555544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.6e-11 Score=112.55 Aligned_cols=108 Identities=37% Similarity=0.461 Sum_probs=30.0
Q ss_pred CCCCCEEeCCCCCCCCCCCCCCCcccC-CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhc-cCC
Q 047035 73 FQELQILDLSGNYFDGWNENKDYDSSG-SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANL 150 (783)
Q Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l-~~l 150 (783)
..++++|+|++|.|+.. +.++ .+.+|+.|+|++|.++. .+.+..+++|++|++++|+|+.+.+ .+ ..+
T Consensus 18 ~~~~~~L~L~~n~I~~I------e~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~l 87 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI------ENLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISE--GLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH--HHHHH-
T ss_pred ccccccccccccccccc------cchhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCcccc--chHHhC
Confidence 33556666666665443 2333 35566666666666653 2345556666666666666655421 23 345
Q ss_pred CCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcc
Q 047035 151 RNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG 190 (783)
Q Consensus 151 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 190 (783)
++|++|++++|++.....-..++.+++|++|++.+|.+..
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 6666666666666554443345556666666666665543
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.08 E-value=1.6e-10 Score=131.73 Aligned_cols=95 Identities=35% Similarity=0.504 Sum_probs=91.6
Q ss_pred CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035 587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666 (783)
Q Consensus 587 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 666 (783)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCcchhhc
Q 047035 667 HNKLNGSIPSCFVNM 681 (783)
Q Consensus 667 ~N~l~g~iP~~~~~~ 681 (783)
+|+++|.+|..++..
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999999999988764
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.8e-10 Score=125.51 Aligned_cols=197 Identities=37% Similarity=0.499 Sum_probs=125.9
Q ss_pred EEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCC-CCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035 78 ILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLT-SLTTLNLYYNRIGGLNPSQGLANLRNLKAL 156 (783)
Q Consensus 78 ~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L 156 (783)
.+++..+.+.... ..+..++.++.|++.+|.++ .++...+.+. +|+.|++++|++... | ..++.+++|+.|
T Consensus 97 ~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~-~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLRSNI-----SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-P-SPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccccCc-----hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-h-hhhhcccccccc
Confidence 4666666553222 33445567777777777776 3455555553 777777777777664 2 246777777777
Q ss_pred eCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccc
Q 047035 157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNL 236 (783)
Q Consensus 157 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 236 (783)
++++|++..... ..+.++.|+.|++++|++...++.......|+++.+++|.+. ..+ ..+.++.++..+.+.+|++
T Consensus 169 ~l~~N~l~~l~~--~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~-~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 169 DLSFNDLSDLPK--LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELL-SSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred ccCCchhhhhhh--hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecc-hhhhhcccccccccCCcee
Confidence 777777776654 233677777777777777755555555666777777777432 222 3466677777777777766
Q ss_pred cccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecC
Q 047035 237 EGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFP 289 (783)
Q Consensus 237 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 289 (783)
.. .+..++.++.+++|++++|.++.. +. ++.+.+++.|+++++.+....|
T Consensus 245 ~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 ED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 53 355666777777777777777633 33 6777777777777777664444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-11 Score=123.96 Aligned_cols=138 Identities=25% Similarity=0.164 Sum_probs=63.4
Q ss_pred cCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc-cccCCCCCCCEEECcCCcCcccCC--CcCCCC
Q 047035 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATR-LGLGNLTNLEVLDLSANRISGSLT--ELAPFR 199 (783)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~~--~l~~l~ 199 (783)
.++.+|+...|.++.+...........|++++.|||++|-+....+- .....+++|+.|+++.|++..... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35566666666666554332112345566666666666655543221 123456666666666666543222 112344
Q ss_pred CCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccC
Q 047035 200 NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHL 260 (783)
Q Consensus 200 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 260 (783)
+|+.|.++.|.++..-.......+|+|+.|+|..|...........-+..|+.|||++|.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 5555555555554211111223345555555555532211122222333444444444444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=6e-11 Score=110.17 Aligned_cols=109 Identities=40% Similarity=0.492 Sum_probs=33.2
Q ss_pred ccCCCCCCCEEeCCCCCCCCCCccccc-CCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCcccc-CC
Q 047035 97 SSGSSKKLKILNLNYNNFNDSVLPYLN-TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGL-GN 174 (783)
Q Consensus 97 ~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~ 174 (783)
.+.+..+++.|+|.+|.++. .+.++ .+.+|++|+|++|.|+.+ ..+..+++|++|++++|.++.+.. .+ ..
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~--~l~~~ 86 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISE--GLDKN 86 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CH--HHHHH
T ss_pred cccccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCcccc--chHHh
Confidence 35566678888888888864 23455 577888888888888776 247778888888888888877643 23 35
Q ss_pred CCCCCEEECcCCcCcccCC--CcCCCCCCCEEEccCccCc
Q 047035 175 LTNLEVLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLN 212 (783)
Q Consensus 175 l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~L~~n~l~ 212 (783)
+++|++|++++|++..... .++.+++|++|++.+|.++
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7788888888887764322 4445555555555555543
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=1.6e-11 Score=121.08 Aligned_cols=216 Identities=23% Similarity=0.234 Sum_probs=106.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC---CCCCCcc-------cccCCCCCCEEEccCCcCC
Q 047035 70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN---FNDSVLP-------YLNTLTSLTTLNLYYNRIG 139 (783)
Q Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~---~~~~~~~-------~l~~l~~L~~L~Ls~n~l~ 139 (783)
+..+..++.++||+|.+...-.......+.+.+.|+..+++.-- ....+|+ .+-.+++|++||||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34455666666666665332222222445555666666665421 1122332 2344567777777777654
Q ss_pred CCCCc---hhccCCCCCCeEeCCCCCCCCCcCc------------cccCCCCCCCEEECcCCcCcccCC-----CcCCCC
Q 047035 140 GLNPS---QGLANLRNLKALNLSWNGISSGATR------------LGLGNLTNLEVLDLSANRISGSLT-----ELAPFR 199 (783)
Q Consensus 140 ~~~p~---~~l~~l~~L~~L~L~~n~l~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~~~-----~l~~l~ 199 (783)
...+. ..+..++.|++|.|.+|.+...... ...+.-+.|+++...+|++..... .+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 33221 2345666777777777766543221 122334566666666666543222 234445
Q ss_pred CCCEEEccCccCccc---CCcccccCCCCCcEEEccCccccc----cCCccccCCCCCCEEEcccccCCccCchhh----
Q 047035 200 NLKVLGMRNNLLNGS---VESKGICELKNLTELDLGENNLEG----QLPWCLSDLIGLKVLDISFNHLSGNLPSVI---- 268 (783)
Q Consensus 200 ~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l---- 268 (783)
.|+.+.+..|.+... +-..++..+++|+.|||.+|.++. .+...+..+++|+.|++++|.+......++
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 566666665554311 111334455666666666665542 122334445555666666555543322222
Q ss_pred -cCCCCCCEEeCcCCccc
Q 047035 269 -ANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 269 -~~l~~L~~L~L~~n~l~ 285 (783)
...++|+.|.+.+|.++
T Consensus 266 ~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEIT 283 (382)
T ss_pred hccCCCCceeccCcchhH
Confidence 12455555555555544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=9.1e-11 Score=112.77 Aligned_cols=130 Identities=25% Similarity=0.216 Sum_probs=98.7
Q ss_pred CCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035 539 SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR 618 (783)
Q Consensus 539 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 618 (783)
+.|+.+++++|.|+ .+.+++.-.+.++.|++++|.+.. +...-.+++|+.|||++|.++ .+...=..+-+.+.|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 56888888888887 566777777888888888888863 333227888888888888887 455555567788888999
Q ss_pred CCccccCCchhccCCcCCCEEeCcCCcccccC-CcchhCCCCCCEEecCCCcCccc
Q 047035 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQI-PIALCQLQKLGILDLSHNKLNGS 673 (783)
Q Consensus 619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ 673 (783)
+|.+.. -..++.+-+|..||+++|++.... -..+++++.|+++.|.+||+.+.
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 988732 245777888889999999887432 24588999999999999999864
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.2e-10 Score=110.25 Aligned_cols=128 Identities=28% Similarity=0.261 Sum_probs=80.5
Q ss_pred cCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCC
Q 047035 172 LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLK 251 (783)
Q Consensus 172 l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 251 (783)
+..++.|+++||++|.|+....+..-.+.++.|++++|.+. .+ ..+..+++|++|||++|.++ .+..+-.++-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-ee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 44566777778888877766556666777777777777775 33 23667777777777777776 3444555666777
Q ss_pred EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEec
Q 047035 252 VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLK 305 (783)
Q Consensus 252 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~ 305 (783)
+|.+++|.+... ..++++-+|..|++++|++..--....++++|-|+++.+.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 777777776522 3466666777777777776522122234444444444333
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-10 Score=115.30 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=58.3
Q ss_pred hcCCCCcEEECcCcccccc----CCCcccCCCCccEEEccCcccccc----cccccccCCCCcEEEccCCcccccCCCCc
Q 047035 464 IRCASLEYLDVSENNFYGH----IFPTYMNLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLLSGHIPCWI 535 (783)
Q Consensus 464 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l 535 (783)
...+.|+.+.++.|.+... ....+..+++|++|+|.+|.++.. +...+..+++|++|++++|.+.......+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 3445555555555544321 112344555555555555555422 22234445566666666666553322222
Q ss_pred -----CCCCCCcEEECCCCccccc----CcccccCCCCCCEEeCCCccc
Q 047035 536 -----GNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRL 575 (783)
Q Consensus 536 -----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l 575 (783)
...++|++|.+.+|.++.. +..++...+.|..|+|++|.+
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1246677777777766522 333455567777777777777
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=3.4e-09 Score=123.30 Aligned_cols=130 Identities=28% Similarity=0.346 Sum_probs=82.1
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC--CCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035 72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN--FNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN 149 (783)
Q Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~--~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 149 (783)
.....|...+.+|.+..... -..+++|++|-+.+|. +......+|..++.|++|||++|.-.+..|. .++.
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~------~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~ 593 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAG------SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGE 593 (889)
T ss_pred chhheeEEEEeccchhhccC------CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhh
Confidence 33556666666665533221 1234467777777775 4444455577777777777777665555564 6777
Q ss_pred CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc
Q 047035 150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL 210 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~ 210 (783)
+-+||+|+++++.+...+. .+++++.|.+|++..+.....++ ....+.+|++|.+....
T Consensus 594 Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCccccch--HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777777777776554 67777777777777766554445 33447777777765543
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=9e-10 Score=120.14 Aligned_cols=247 Identities=23% Similarity=0.243 Sum_probs=150.1
Q ss_pred cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEE
Q 047035 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWL 496 (783)
Q Consensus 417 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (783)
+..++.+.+..|.+.. +-..+..+++|..+++.+|++.. +... ...+++|++|++++|.++... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444455555555542 22234555666666666666652 2211 345666777777777665532 34455567777
Q ss_pred EccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccc
Q 047035 497 YLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575 (783)
Q Consensus 497 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 575 (783)
++.+|.++. ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 777777653 2234446777777777777764433 2 45667777777877777622 2344445555567777777
Q ss_pred ccccccccCcC--CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccccc---C
Q 047035 576 FGSIASSLNLS--SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ---I 650 (783)
Q Consensus 576 ~~~~p~~~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~---~ 650 (783)
+..-+. ..+. .|+.+++++|.+. .++..+..+..+..|++.+|++... ..+...+.+..+....|.+... .
T Consensus 221 ~~~~~l-~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 221 SKLEGL-NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred eeccCc-ccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 633221 1222 3788888888887 4446677778888888888887543 2345556677777777776522 1
Q ss_pred Ccc-hhCCCCCCEEecCCCcCcccCCcc
Q 047035 651 PIA-LCQLQKLGILDLSHNKLNGSIPSC 677 (783)
Q Consensus 651 p~~-l~~l~~L~~L~ls~N~l~g~iP~~ 677 (783)
... .+..+.++...+..|+.....+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred ccccccccccccccccccCccccccccc
Confidence 211 566778888888888887766643
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.5e-09 Score=118.41 Aligned_cols=199 Identities=35% Similarity=0.409 Sum_probs=104.3
Q ss_pred cCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCC
Q 047035 123 NTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLK 202 (783)
Q Consensus 123 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~ 202 (783)
..+..++.+++..|.+.... ..+..+++|+.|++.+|.+..+.. .+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIEKIEN--LLSSLVNLQVLDLSFNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhh--cccccccceeeeeccccchhhccc--chhhhhcchheeccccccccc-cchhhccchh
Confidence 45566666667777766531 236677777777777777776543 255677777777777776632 2344444566
Q ss_pred EEEccCccCcccCCcccccCCCCCcEEEccCccccccCC-ccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035 203 VLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLP-WCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281 (783)
Q Consensus 203 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 281 (783)
.|++++|.++. + ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..
T Consensus 144 ~L~l~~N~i~~-~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 144 ELNLSGNLISD-I--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLD 217 (414)
T ss_pred hheeccCcchh-c--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccc
Confidence 66666666542 1 234445555555555555553222 1 24444455555555544311 1222222233334444
Q ss_pred CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCccc
Q 047035 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLV 357 (783)
Q Consensus 282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~ 357 (783)
|.+. .+.........+|+.+++.++.+..++..+..+..+..+++..|++.
T Consensus 218 n~i~-------------------------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 218 NKIS-------------------------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccce-------------------------eccCcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 4333 22211111111366667777777666555555666666666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.2e-08 Score=77.83 Aligned_cols=60 Identities=40% Similarity=0.492 Sum_probs=40.9
Q ss_pred CCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 670 (783)
+|++|++++|++....+.+|.++++|++|++++|+++...|..|.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777766655556666777777777777777666666677777777777777764
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=1.9e-08 Score=117.11 Aligned_cols=130 Identities=25% Similarity=0.265 Sum_probs=83.7
Q ss_pred CCCcEEEccCccccCcccCCccCCCCccEEEcccCcC-CCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCee
Q 047035 369 TKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNL-TGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447 (783)
Q Consensus 369 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 447 (783)
...+...+-+|.+..+. ....++.|++|-+..|.. ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45566666666555442 223345677777777651 235666666667777777777776666777777777777777
Q ss_pred eccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc
Q 047035 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502 (783)
Q Consensus 448 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 502 (783)
++++..+. .+|.. +.++..|.+|++..+.....++.....+.+|++|.+..-.
T Consensus 601 ~L~~t~I~-~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 66665 3567777777777766555555555557777777765543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=3.1e-08 Score=75.52 Aligned_cols=59 Identities=37% Similarity=0.463 Sum_probs=27.5
Q ss_pred CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574 (783)
Q Consensus 516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 574 (783)
+|++|++++|++....+.+|.++++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444444444444444444444444444444444444444444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.6e-09 Score=104.43 Aligned_cols=193 Identities=23% Similarity=0.188 Sum_probs=99.9
Q ss_pred CCEEeCCCCCCCC-CCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCC-CCCCcCccccCCCCCCCEE
Q 047035 104 LKILNLNYNNFND-SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNG-ISSGATRLGLGNLTNLEVL 181 (783)
Q Consensus 104 L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L 181 (783)
|++||||...++. .+...+..|.+|+.|.|.++++.+.+.. .+++-.+|+.|+++.+. ++.......+.+|+.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5555555554432 1223344555555555555555544332 45555555555555542 3332222334556666666
Q ss_pred ECcCCcCcccCC--CcCC-CCCCCEEEccCccCc---ccCCcccccCCCCCcEEEccCcc-ccccCCccccCCCCCCEEE
Q 047035 182 DLSANRISGSLT--ELAP-FRNLKVLGMRNNLLN---GSVESKGICELKNLTELDLGENN-LEGQLPWCLSDLIGLKVLD 254 (783)
Q Consensus 182 ~Ls~n~~~~~~~--~l~~-l~~L~~L~L~~n~l~---~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~ 254 (783)
+|+.|.+....- .+.. -++|+.|+++++.-. ..+. .....+++|.+|||++|. ++......|.+++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 666655432211 1111 245666666654321 1111 234567888888888764 3333334566778888888
Q ss_pred cccccCCccCchh---hcCCCCCCEEeCcCCccceecChhhhcCCCCCcE
Q 047035 255 ISFNHLSGNLPSV---IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEV 301 (783)
Q Consensus 255 L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~ 301 (783)
++.|.. .+|.. +...|.|.+|++.++--.+.... ....+++|+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel-~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMEL-LKEMLSHLKI 391 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHH-HHHhCccccc
Confidence 888764 45543 45678888888887643322221 2334555543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.1e-09 Score=114.07 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=15.5
Q ss_pred cccccCCCCCCEEeCCCCCCC
Q 047035 67 FSLFLPFQELQILDLSGNYFD 87 (783)
Q Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~ 87 (783)
+-.+..|+.||+|.|.++.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred CceeccccceeeEEecCcchh
Confidence 345677888888888887764
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.42 E-value=3.6e-09 Score=106.92 Aligned_cols=280 Identities=23% Similarity=0.156 Sum_probs=154.7
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCC-CCCCCcccc-cCCCCCCEEEccCCc-CCCCCCchhccCC
Q 047035 74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNN-FNDSVLPYL-NTLTSLTTLNLYYNR-IGGLNPSQGLANL 150 (783)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~-~~~~~~~~l-~~l~~L~~L~Ls~n~-l~~~~p~~~l~~l 150 (783)
..|+.|.+.++.-.+. .........++++++|++.+|. +++.....+ ..++.|++|+|..|. ++...-......+
T Consensus 138 g~lk~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCc--chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 3578888887653332 2222445678899999988886 333333333 468899999998854 4443221234578
Q ss_pred CCCCeEeCCCCC-CCCCcCccccCCCCCCCEEECcCCcCcccCC---CcCCCCCCCEEEccCccCcccCC-cccccCCCC
Q 047035 151 RNLKALNLSWNG-ISSGATRLGLGNLTNLEVLDLSANRISGSLT---ELAPFRNLKVLGMRNNLLNGSVE-SKGICELKN 225 (783)
Q Consensus 151 ~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~ 225 (783)
++|++|++++|. +++........+++.++.+.+.+|.-.+.-. .-+.+..+.++++..|....... ...-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 899999999884 3332222345667778888777764322111 22344556666666654321211 122235677
Q ss_pred CcEEEccCccccc-cCCccc-cCCCCCCEEEcccccC-CccCchhh-cCCCCCCEEeCcCCccceecC-hhhhcCCCCCc
Q 047035 226 LTELDLGENNLEG-QLPWCL-SDLIGLKVLDISFNHL-SGNLPSVI-ANLTSLEYLALSDNNFQGEFP-LSLLTNHSNLE 300 (783)
Q Consensus 226 L~~L~L~~n~l~~-~~~~~l-~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p-~~~l~~l~~L~ 300 (783)
|+.|+.+++...+ ..-.++ .+..+|+.|.+..|+- +..--..+ .+++.|+.+++.++.....-. ...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 8888888775432 111222 3567888888888763 32222223 356778888888775432211 11234677777
Q ss_pred EEEeccCcccccC-----CCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCc
Q 047035 301 VLLLKVSSNLRLK-----TENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNK 355 (783)
Q Consensus 301 ~L~l~~~~~~~~~-----~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~ 355 (783)
.+.++.|....-. ...-.....++.+.++++... ..-..+..+++|+.+++-+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777765542211 111223445555555555443 333344455555555555443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.5e-09 Score=99.91 Aligned_cols=157 Identities=20% Similarity=0.127 Sum_probs=78.3
Q ss_pred CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc-CcccCCcccccCCCCCcEE
Q 047035 152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL-LNGSVESKGICELKNLTEL 229 (783)
Q Consensus 152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L 229 (783)
.|++|||+...++.......+..|.+|+.|.+.++++...+. .+++-.+|+.|+++.+. ++.....-.+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666666544333345566666666666666665444 56666666666666543 2211111234566666677
Q ss_pred EccCccccccCCcccc-C-CCCCCEEEcccccCC---ccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEe
Q 047035 230 DLGENNLEGQLPWCLS-D-LIGLKVLDISFNHLS---GNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLL 304 (783)
Q Consensus 230 ~L~~n~l~~~~~~~l~-~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l 304 (783)
++++|.+.......+. . -+.|+.|+++++.-. ..+..-...+++|.+|||++|.....--...+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7766665432211111 1 134666666655311 1111122356666666666654221111122344555555555
Q ss_pred ccCc
Q 047035 305 KVSS 308 (783)
Q Consensus 305 ~~~~ 308 (783)
+.|.
T Consensus 346 sRCY 349 (419)
T KOG2120|consen 346 SRCY 349 (419)
T ss_pred hhhc
Confidence 5443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.25 E-value=2.5e-07 Score=88.43 Aligned_cols=142 Identities=23% Similarity=0.248 Sum_probs=86.5
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCC---CCCCc-------ccccCCCCCCEEEccCCcCC
Q 047035 70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNF---NDSVL-------PYLNTLTSLTTLNLYYNRIG 139 (783)
Q Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~---~~~~~-------~~l~~l~~L~~L~Ls~n~l~ 139 (783)
+..+..++.+|||+|.|........+..+++-++|+..+++.-.. .+.++ +.+-+||+|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344678888888888876544444556677778888888876422 12222 34567888888888888876
Q ss_pred CCCCc---hhccCCCCCCeEeCCCCCCCCCcCc------------cccCCCCCCCEEECcCCcCcccCC-----CcCCCC
Q 047035 140 GLNPS---QGLANLRNLKALNLSWNGISSGATR------------LGLGNLTNLEVLDLSANRISGSLT-----ELAPFR 199 (783)
Q Consensus 140 ~~~p~---~~l~~l~~L~~L~L~~n~l~~~~~~------------~~l~~l~~L~~L~Ls~n~~~~~~~-----~l~~l~ 199 (783)
...|. ..+++-+.|++|.+++|.+-..... .....-|.|++.....|++..... .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 65542 3466778888888888876543321 012234566666666666543322 112223
Q ss_pred CCCEEEccCccC
Q 047035 200 NLKVLGMRNNLL 211 (783)
Q Consensus 200 ~L~~L~L~~n~l 211 (783)
.|+++.+..|.+
T Consensus 186 ~lk~vki~qNgI 197 (388)
T COG5238 186 NLKEVKIQQNGI 197 (388)
T ss_pred CceeEEeeecCc
Confidence 455555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=2.2e-07 Score=89.91 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=84.0
Q ss_pred CCCCcEEEccCccccc--cCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCc
Q 047035 223 LKNLTELDLGENNLEG--QLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLE 300 (783)
Q Consensus 223 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~ 300 (783)
++.++++||.+|.++. .+...+.++|.|++|+++.|.+...+-..-..+.+|+.|.|.+..+.-.-....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455556666655542 23333445566666666666554322211123455666666555443222223455566666
Q ss_pred EEEeccCcccccCCCC---CCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEcc
Q 047035 301 VLLLKVSSNLRLKTEN---WIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377 (783)
Q Consensus 301 ~L~l~~~~~~~~~~~~---~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 377 (783)
+|+++.|.......++ -...+.++++....|... +..+-|++. .-++++..+.+.
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--------------~w~~~~~l~--------r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--------------LWLNKNKLS--------RIFPNVNSVFVC 207 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHH--------------HHHHHHhHH--------hhcccchheeee
Confidence 6666655321111000 000112222222222111 111111111 123555556666
Q ss_pred CccccCcccC-CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccccc
Q 047035 378 NNSFSGILQL-PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGN 433 (783)
Q Consensus 378 ~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 433 (783)
.|++...... .+..++.+.-|+++.+++...-.-.....++.|..|.++++.+.+.
T Consensus 208 e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 208 EGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 6655443211 1234555556666666664322222223567777777777776543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=5e-08 Score=105.05 Aligned_cols=125 Identities=31% Similarity=0.313 Sum_probs=79.5
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCC-CcCCCCCCcEEEC
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPC-WIGNFSYLDVLLM 546 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L 546 (783)
.|...+.+.|.+.- +..++.-++.|+.|+|++|+++... .+..++.|+.|||++|.+. .+|. ....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 56666677776643 3345556677777777777776432 5666777777777777776 3343 222333 777777
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCcccccccc--cccCcCCCcEEEccCCccc
Q 047035 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA--SSLNLSSIMHLYLQNNALS 599 (783)
Q Consensus 547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~L~~n~l~ 599 (783)
++|.++. + ..+.++++|+.||+++|-+.+.-. ..+.+..|+.|+|.+|.+-
T Consensus 240 rnN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777762 2 346677777777887777765322 2226677777777777764
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=2.5e-07 Score=89.62 Aligned_cols=203 Identities=22% Similarity=0.213 Sum_probs=120.8
Q ss_pred CCCCCCEEeCCCCCCCC--CCcccccCCCCCCEEEccCCcCCCCCCchhc-cCCCCCCeEeCCCCCCCCCcCccccCCCC
Q 047035 100 SSKKLKILNLNYNNFND--SVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL-ANLRNLKALNLSWNGISSGATRLGLGNLT 176 (783)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 176 (783)
.+++++.|||.+|.+++ .+...+.++|+|++|+|+.|++...+.. + ..+.+|+.|-|.+..+........+..+|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 45678888888887764 2444556788888888888887665432 3 45678888888888776655545667788
Q ss_pred CCCEEECcCCcCcc---cCCCcCCC-CCCCEEEccCccCcccCCc-ccccCCCCCcEEEccCccccccC-CccccCCCCC
Q 047035 177 NLEVLDLSANRISG---SLTELAPF-RNLKVLGMRNNLLNGSVES-KGICELKNLTELDLGENNLEGQL-PWCLSDLIGL 250 (783)
Q Consensus 177 ~L~~L~Ls~n~~~~---~~~~l~~l-~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L 250 (783)
.++.|.++.|.+.. ........ +.+++|....|...-.... ....-++++..+-+..|.+.... ...+..++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 88888888874432 11122222 2455555555432110000 01122467777777777665322 2344556666
Q ss_pred CEEEcccccCCcc-CchhhcCCCCCCEEeCcCCccceecCh-----hhhcCCCCCcEEEe
Q 047035 251 KVLDISFNHLSGN-LPSVIANLTSLEYLALSDNNFQGEFPL-----SLLTNHSNLEVLLL 304 (783)
Q Consensus 251 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~-----~~l~~l~~L~~L~l 304 (783)
--|+|+.+++... --+++.+++.|..|.++++.+...+.- -.++.+++++.|+=
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 6777777777532 224577788888888888876532221 13456677776643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=4.3e-07 Score=77.82 Aligned_cols=112 Identities=22% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCCCCEEeCCCccccccccccc--CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCE
Q 047035 561 NFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRV 638 (783)
Q Consensus 561 ~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 638 (783)
....|+..+|++|.+.. .|..+ .++.++.|++.+|.++ .+|..+..++.|+.|+++.|++. ..|+.+..+.++-.
T Consensus 51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence 33445555666666653 33333 4556666666666665 55666666666666666666663 44555555666666
Q ss_pred EeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 639 LLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 639 L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|+..+|.+. .+|-.+-.-+..-..++.++++.+.-|.
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 666666555 4444333323333344555555554443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=7.8e-06 Score=78.44 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=19.6
Q ss_pred hcCCCCCCEEeCcCCccceecCh---hhhcCCCCCcEEEeccCcc
Q 047035 268 IANLTSLEYLALSDNNFQGEFPL---SLLTNHSNLEVLLLKVSSN 309 (783)
Q Consensus 268 l~~l~~L~~L~L~~n~l~~~~p~---~~l~~l~~L~~L~l~~~~~ 309 (783)
+.+||+|+..+|++|.+....|. ..++..+.|++|.+++|..
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 44455555555555555433332 2233444455555444443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2e-05 Score=72.65 Aligned_cols=84 Identities=32% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEE
Q 047035 103 KLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLD 182 (783)
Q Consensus 103 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 182 (783)
+...+||++|.+.. ...|..++.|.+|.|..|+|+.+.|. .-.-+++|+.|.|.+|.+........+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44455555555532 23344555555555555555555442 2223344555555555554444333445555555555
Q ss_pred CcCCcCc
Q 047035 183 LSANRIS 189 (783)
Q Consensus 183 Ls~n~~~ 189 (783)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555544
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.79 E-value=1e-06 Score=89.50 Aligned_cols=62 Identities=23% Similarity=0.029 Sum_probs=29.8
Q ss_pred cCCCCCEEEccCCcccCCCC-hhhhhcCCCCcEEEccCccc-cCcccCCc-cCCCCccEEEcccC
Q 047035 342 HQYDFKFLDLSSNKLVGNFP-TWLMQNNTKLEVLRLSNNSF-SGILQLPK-VKHDLLRHLDISNN 403 (783)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~-~~~~~L~~L~L~~n 403 (783)
.+..|+.++.+++...+..+ ..+.+++++|+.+-++.|+- +....... .+++.|+.+++..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEEC 356 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccc
Confidence 45566666666654433222 23344566666666666642 22111111 34455555555544
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=6.4e-06 Score=93.88 Aligned_cols=151 Identities=21% Similarity=0.247 Sum_probs=101.5
Q ss_pred CCCCEEeCCCCCC-CCCCccccc-CCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035 102 KKLKILNLNYNNF-NDSVLPYLN-TLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE 179 (783)
Q Consensus 102 ~~L~~L~Ls~n~~-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 179 (783)
.+|++||+++... ....|..++ .+|.|++|.+++-.+....-.+...++++|+.||+|+++++... +++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS---GISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH---HHhccccHH
Confidence 5788888888654 333445554 57889988888766644322345678888999999998888762 688888888
Q ss_pred EEECcCCcCcccCC--CcCCCCCCCEEEccCccCcccC--C---cccccCCCCCcEEEccCccccccCCccc-cCCCCCC
Q 047035 180 VLDLSANRISGSLT--ELAPFRNLKVLGMRNNLLNGSV--E---SKGICELKNLTELDLGENNLEGQLPWCL-SDLIGLK 251 (783)
Q Consensus 180 ~L~Ls~n~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~--~---~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~ 251 (783)
+|.+.+-.+..... .+.++++|++||+|.......- . .+.-..+|+|+.||.+++.+...+-+.+ ...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88888777765333 7788889999998876543211 1 0112347899999999888775443332 2334555
Q ss_pred EEEc
Q 047035 252 VLDI 255 (783)
Q Consensus 252 ~L~L 255 (783)
.+..
T Consensus 279 ~i~~ 282 (699)
T KOG3665|consen 279 QIAA 282 (699)
T ss_pred hhhh
Confidence 4443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.4e-06 Score=74.64 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=5.1
Q ss_pred CcEEECcCccc
Q 047035 469 LEYLDVSENNF 479 (783)
Q Consensus 469 L~~L~L~~n~l 479 (783)
+..++|+.|++
T Consensus 29 ~h~ldLssc~l 39 (177)
T KOG4579|consen 29 LHFLDLSSCQL 39 (177)
T ss_pred hhhcccccchh
Confidence 34445555544
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=7e-05 Score=78.60 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=87.2
Q ss_pred ccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035 487 YMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ 566 (783)
Q Consensus 487 ~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 566 (783)
+..+.+++.|++++|.++ .+|. + ..+|+.|.+++|.-...+|..+. ++|+.|.+++|.-...+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 344688999999999877 4562 2 45799999988765556676552 5789999998843335554 467
Q ss_pred EEeCCCcccc--cccccccCcCCCcEEEccCCccc--ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCc
Q 047035 567 LLDLSENRLF--GSIASSLNLSSIMHLYLQNNALS--GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642 (783)
Q Consensus 567 ~L~Ls~N~l~--~~~p~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 642 (783)
.|+++.+... +.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... .+|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCc-----chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 7777766542 2333 45677777543311 111211 1157888888888764 3454443 578888887
Q ss_pred CCc
Q 047035 643 GNY 645 (783)
Q Consensus 643 ~N~ 645 (783)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=4.8e-05 Score=70.17 Aligned_cols=111 Identities=25% Similarity=0.219 Sum_probs=87.6
Q ss_pred CCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCC
Q 047035 73 FQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRN 152 (783)
Q Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~ 152 (783)
......+||++|.+... ..|..++.|.+|.|.+|+|+...|.--..+++|++|.|.+|.|.....-..+..|++
T Consensus 41 ~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 34667899999988654 568889999999999999997777666678899999999998765443345888999
Q ss_pred CCeEeCCCCCCCCCcCc--cccCCCCCCCEEECcCCcCc
Q 047035 153 LKALNLSWNGISSGATR--LGLGNLTNLEVLDLSANRIS 189 (783)
Q Consensus 153 L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~Ls~n~~~ 189 (783)
|++|.+-+|.+.....- ..+..+++|++||.......
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 99999999988765431 34677899999998776543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1e-05 Score=92.31 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=51.9
Q ss_pred CCCCEEEccCCcCC-CCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEE
Q 047035 126 TSLTTLNLYYNRIG-GLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVL 204 (783)
Q Consensus 126 ~~L~~L~Ls~n~l~-~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L 204 (783)
.+|++|++++...- ...|.+.-..+|.|+.|.+++-.+..........++++|+.||+|+++++.. ..++.+++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46667777665422 2222222234566666666655544332222344556666666666655522 345555555555
Q ss_pred EccCccCcccCCcccccCCCCCcEEEccCc
Q 047035 205 GMRNNLLNGSVESKGICELKNLTELDLGEN 234 (783)
Q Consensus 205 ~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 234 (783)
.+.+-.+...-....+.++++|+.||+|..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 555444432111223444455555555443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.0001 Score=77.42 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=97.6
Q ss_pred cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcE
Q 047035 511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMH 590 (783)
Q Consensus 511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~ 590 (783)
+..+..++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+. ++|+.|++++|.....+| ++|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cccce
Confidence 455789999999999887 4562 234699999998665557776553 689999999994333455 45888
Q ss_pred EEccCCccc--ccCchhhhcCCCCcEEECcCCccc--cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035 591 LYLQNNALS--GQIPSTLFRSTELLTLDLRDNKFF--GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666 (783)
Q Consensus 591 L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 666 (783)
|+++.+... +.+|. +|+.|.+.+++.. ..+|..+ -++|+.|++++|... ..|..+. .+|+.|+++
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 888876643 34554 4667777543311 1122211 168999999999866 3454443 589999998
Q ss_pred CCc------CcccCCcch
Q 047035 667 HNK------LNGSIPSCF 678 (783)
Q Consensus 667 ~N~------l~g~iP~~~ 678 (783)
.|. -.+.+|+.+
T Consensus 186 ~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 186 IEQKTTWNISFEGFPDGL 203 (426)
T ss_pred ccccccccCccccccccc
Confidence 873 234677665
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=3.1e-05 Score=53.84 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=19.3
Q ss_pred CCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 635 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
+|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34445556666666666666554
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=7.8e-05 Score=51.82 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=17.3
Q ss_pred CCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555554 34444555555555555555554
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00063 Score=60.85 Aligned_cols=86 Identities=16% Similarity=0.213 Sum_probs=27.5
Q ss_pred cChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC
Q 047035 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537 (783)
Q Consensus 458 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 537 (783)
++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++++.+++..+ +.......|.+
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 33333444444444444332 3222223344444444444433 222222233333444444444332 32233333444
Q ss_pred CCCCcEEECC
Q 047035 538 FSYLDVLLMS 547 (783)
Q Consensus 538 l~~L~~L~L~ 547 (783)
+ +++.+.+.
T Consensus 103 ~-~l~~i~~~ 111 (129)
T PF13306_consen 103 C-NLKEINIP 111 (129)
T ss_dssp --T--EEE-T
T ss_pred C-CceEEEEC
Confidence 3 44444444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00045 Score=61.82 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=58.1
Q ss_pred ChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccC
Q 047035 410 PQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMN 489 (783)
Q Consensus 410 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 489 (783)
+...+..+++|+.+.+.. .+...-...|.++++|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 334444556666666654 344344456677777777777664 43 56666677777777777765 333333456666
Q ss_pred CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCC
Q 047035 490 LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYL 541 (783)
Q Consensus 490 l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 541 (783)
+++|+.+.+..+ +.......|.++ .++.+.+.. .+.......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 777777777654 444445566666 777777765 3443444555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.34 E-value=9.7e-05 Score=71.32 Aligned_cols=106 Identities=26% Similarity=0.237 Sum_probs=59.7
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCC--CCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035 72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYN--NFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN 149 (783)
Q Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 149 (783)
.+..|+.|++.+..++.. ..+..+++|++|.++.| .+.+.++.....+++|++|++++|+|..+.....+..
T Consensus 41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 445555555555544332 44566777777777777 5555555555566777777777777654221123555
Q ss_pred CCCCCeEeCCCCCCCCCcCc--cccCCCCCCCEEEC
Q 047035 150 LRNLKALNLSWNGISSGATR--LGLGNLTNLEVLDL 183 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L 183 (783)
+.+|..|++.+|..+..... ..+.-+++|++||-
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66666666666655543221 12334555555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=1e-05 Score=77.97 Aligned_cols=87 Identities=30% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCC
Q 047035 100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLE 179 (783)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 179 (783)
.+.+.+.|+.-+|.+++ ......++.|++|.||-|.|+..- .+..|++|++|+|..|.|.+......+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccH--HHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 35677888888888875 344568899999999999998873 4889999999999999998887766778899999
Q ss_pred EEECcCCcCccc
Q 047035 180 VLDLSANRISGS 191 (783)
Q Consensus 180 ~L~Ls~n~~~~~ 191 (783)
.|.|..|.-.+.
T Consensus 92 ~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 92 TLWLDENPCCGE 103 (388)
T ss_pred hHhhccCCcccc
Confidence 999988876543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00029 Score=68.16 Aligned_cols=87 Identities=31% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCC--cCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCC
Q 047035 100 SSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYN--RIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTN 177 (783)
Q Consensus 100 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~ 177 (783)
.+..|+.|++.+..++. ...+-.+++|+.|.++.| ++.+..+. ...++++|++|++++|++..+.....+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455555555555542 234555667777777777 44433332 23445666666666666665433334555566
Q ss_pred CCEEECcCCcCc
Q 047035 178 LEVLDLSANRIS 189 (783)
Q Consensus 178 L~~L~Ls~n~~~ 189 (783)
|..|++..|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 666666665544
No 68
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.07 E-value=0.00023 Score=49.33 Aligned_cols=25 Identities=44% Similarity=0.939 Sum_probs=15.7
Q ss_pred CCCCCCCcCCCCCCCCcccceeEec
Q 047035 12 ADEILTSWVDDGISDCCDWERVTCD 36 (783)
Q Consensus 12 ~~~~~~~W~~~~~~~~c~w~gv~c~ 36 (783)
|.+++.+|+.....+||.|.||+|+
T Consensus 19 ~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 19 PSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cCcccccCCCcCCCCCeeeccEEeC
Confidence 3588999986433689999999995
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.72 E-value=0.00054 Score=39.54 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=18.8
Q ss_pred cceeEeccCCcCcccCCccccCc
Q 047035 752 YMSGIDLSYNELTGEIPSEIGEL 774 (783)
Q Consensus 752 ~l~~ldls~N~l~g~ip~~~~~l 774 (783)
+|+.||||+|+++ +||+++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3789999999999 999998765
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=4.7e-05 Score=73.52 Aligned_cols=83 Identities=35% Similarity=0.349 Sum_probs=43.2
Q ss_pred CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035 150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 229 (783)
+.+.+.|++-+|.++++.. ..+++.|++|.|+-|+|+. ...+..|++|++|+|..|.|...-...-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4455566666666665432 3456666666666666652 22344555555555555555422222233445555555
Q ss_pred EccCccc
Q 047035 230 DLGENNL 236 (783)
Q Consensus 230 ~L~~n~l 236 (783)
.|..|.-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 5554443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.42 E-value=0.00045 Score=77.65 Aligned_cols=175 Identities=22% Similarity=0.102 Sum_probs=104.0
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCC-CCCCC----CcccccCCCCCCEEEccCCc-CCCCCCc
Q 047035 71 LPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYN-NFNDS----VLPYLNTLTSLTTLNLYYNR-IGGLNPS 144 (783)
Q Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~Ls~n~-l~~~~p~ 144 (783)
...+.|+.|.+.++.-... .........+++|+.|+++++ ..... .......+++|+.|+++++. +++..-.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITD--DSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhCchhhHhhhcccccCCh--hhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 3478999999987632221 111245667899999999983 22111 12344567999999999988 5554322
Q ss_pred hhcc-CCCCCCeEeCCCCC-CCCCcCccccCCCCCCCEEECcCCcCccc--C-CCcCCCCCCCEEEccCccCcccCCccc
Q 047035 145 QGLA-NLRNLKALNLSWNG-ISSGATRLGLGNLTNLEVLDLSANRISGS--L-TELAPFRNLKVLGMRNNLLNGSVESKG 219 (783)
Q Consensus 145 ~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~ 219 (783)
.++ .+++|++|.+.+|. +++.........+++|++|+++++..... . .....+++|+.|.+....
T Consensus 263 -~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~--------- 332 (482)
T KOG1947|consen 263 -ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN--------- 332 (482)
T ss_pred -HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------
Confidence 333 38899999988887 66655444456789999999998865421 1 123446666665443322
Q ss_pred ccCCCCCcEEEccCcccc---ccCCccccCCCCCCEEEccccc
Q 047035 220 ICELKNLTELDLGENNLE---GQLPWCLSDLIGLKVLDISFNH 259 (783)
Q Consensus 220 l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~ 259 (783)
.++.++.+.+...... .........+++++.+.+..+.
T Consensus 333 --~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 333 --GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred --CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 1333444443332221 1122234556666666666665
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00064 Score=76.44 Aligned_cols=63 Identities=27% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCCCCEEECcCCc-CcccC-CCcC-CCCCCCEEEccCcc-CcccCCcccccCCCCCcEEEccCccc
Q 047035 174 NLTNLEVLDLSANR-ISGSL-TELA-PFRNLKVLGMRNNL-LNGSVESKGICELKNLTELDLGENNL 236 (783)
Q Consensus 174 ~l~~L~~L~Ls~n~-~~~~~-~~l~-~l~~L~~L~L~~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l 236 (783)
.+++|+.|+++++. ++... ..++ .+++|++|.+.+|. ++...-......++.|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555556655555 22211 1122 25556666555554 33222212233455566666665543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0019 Score=37.21 Aligned_cols=20 Identities=65% Similarity=0.850 Sum_probs=11.9
Q ss_pred CCEEecCCCcCcccCCcchhh
Q 047035 660 LGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 660 L~~L~ls~N~l~g~iP~~~~~ 680 (783)
|++||+++|+++ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 56655543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.58 E-value=0.00082 Score=73.58 Aligned_cols=182 Identities=31% Similarity=0.340 Sum_probs=92.5
Q ss_pred CCEEeCCCCCCCCCCc----ccccCCCCCCEEEccCCcCCCCCCc---hhccCC-CCCCeEeCCCCCCCCCcCc---ccc
Q 047035 104 LKILNLNYNNFNDSVL----PYLNTLTSLTTLNLYYNRIGGLNPS---QGLANL-RNLKALNLSWNGISSGATR---LGL 172 (783)
Q Consensus 104 L~~L~Ls~n~~~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~---~~l~~l-~~L~~L~L~~n~l~~~~~~---~~l 172 (783)
+..|.|.+|.+..... ..+...++|+.|+++.|.+.+..-. ..+... ..|++|++..|.++..... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5555555555543322 2334455566666666655432110 011221 3455566666655543221 234
Q ss_pred CCCCCCCEEECcCCcCccc----CC-C----cCCCCCCCEEEccCccCcccCC---cccccCCCC-CcEEEccCcccccc
Q 047035 173 GNLTNLEVLDLSANRISGS----LT-E----LAPFRNLKVLGMRNNLLNGSVE---SKGICELKN-LTELDLGENNLEGQ 239 (783)
Q Consensus 173 ~~l~~L~~L~Ls~n~~~~~----~~-~----l~~l~~L~~L~L~~n~l~~~~~---~~~l~~l~~-L~~L~L~~n~l~~~ 239 (783)
.....++.++++.|.+... ++ . +....++++|.+.+|.++...- ...+...+. +.+|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4456666667766665210 11 1 2345667777777776542110 122333444 56677777766532
Q ss_pred ----CCccccCC-CCCCEEEcccccCCccCc----hhhcCCCCCCEEeCcCCccc
Q 047035 240 ----LPWCLSDL-IGLKVLDISFNHLSGNLP----SVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 240 ----~~~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~ 285 (783)
....+..+ ..+++++++.|.++.... ..+..++.++++.+..|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22234444 566777777777765433 33445666777777777655
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.24 E-value=0.0022 Score=70.21 Aligned_cols=209 Identities=25% Similarity=0.222 Sum_probs=135.1
Q ss_pred CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCccc----ccCC-CCCCEEEccCCcCCCCCC---chh
Q 047035 75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPY----LNTL-TSLTTLNLYYNRIGGLNP---SQG 146 (783)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~~p---~~~ 146 (783)
.++.|.|.+|.+...........+.....|..|++++|.+.+..... +... ..|++|++..|.++.... ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37888888888876655555567777888999999999887543322 2232 567778888887765432 134
Q ss_pred ccCCCCCCeEeCCCCCCCCCcCc---cc----cCCCCCCCEEECcCCcCcccC----C-CcCCCCC-CCEEEccCccCcc
Q 047035 147 LANLRNLKALNLSWNGISSGATR---LG----LGNLTNLEVLDLSANRISGSL----T-ELAPFRN-LKVLGMRNNLLNG 213 (783)
Q Consensus 147 l~~l~~L~~L~L~~n~l~~~~~~---~~----l~~l~~L~~L~Ls~n~~~~~~----~-~l~~l~~-L~~L~L~~n~l~~ 213 (783)
+.....++.++++.|.+...... .. +....++++|.+++|.++... . .+...+. ++.+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 56678888889988887532211 12 234678899999999876421 1 3455555 7779999988753
Q ss_pred cCC---cccccCC-CCCcEEEccCcccccc----CCccccCCCCCCEEEcccccCCccCc----hhhcCCCCCCEEeCcC
Q 047035 214 SVE---SKGICEL-KNLTELDLGENNLEGQ----LPWCLSDLIGLKVLDISFNHLSGNLP----SVIANLTSLEYLALSD 281 (783)
Q Consensus 214 ~~~---~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~ 281 (783)
... ...+..+ ..+++++++.|.+... +...+..+++++.+.++.|.+..... ..+.....+.++.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 311 1223444 6789999999998764 34455677899999999998864322 1222334445555554
Q ss_pred Cc
Q 047035 282 NN 283 (783)
Q Consensus 282 n~ 283 (783)
+.
T Consensus 328 ~~ 329 (478)
T KOG4308|consen 328 TG 329 (478)
T ss_pred cC
Confidence 43
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.95 E-value=0.39 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.2
Q ss_pred ccEEeCCCCCCCcc
Q 047035 323 LKVLQLPNCNLKVI 336 (783)
Q Consensus 323 L~~L~L~~~~l~~i 336 (783)
|+.|++++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444555544443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.92 E-value=0.028 Score=53.41 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=60.3
Q ss_pred CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEE
Q 047035 584 NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGIL 663 (783)
Q Consensus 584 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 663 (783)
.....+.||++.|.+- ..-..|.-++.|..||++.|++ ...|+.++.+..++.+++..|..+ ..|.+++.++.++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444455555555554 3444566667777888888877 467777777777778888888777 667888888888888
Q ss_pred ecCCCcCc
Q 047035 664 DLSHNKLN 671 (783)
Q Consensus 664 ~ls~N~l~ 671 (783)
++.+|+|+
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888875
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.75 E-value=0.3 Score=28.64 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=6.4
Q ss_pred CCCCEEecCCCcCcc
Q 047035 658 QKLGILDLSHNKLNG 672 (783)
Q Consensus 658 ~~L~~L~ls~N~l~g 672 (783)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.83 E-value=0.19 Score=47.12 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=44.5
Q ss_pred CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhh-hcCCCCcEEECcCc-cccccCCCcccCCCCccEE
Q 047035 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSV-IRCASLEYLDVSEN-NFYGHIFPTYMNLTQLRWL 496 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 496 (783)
.++.++-++..|...--+-+.+++.++.|.+.+|+-.+.--...+ .-.++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466677777666554444556666677777776654321111111 12356777777766 4444333445555666666
Q ss_pred EccC
Q 047035 497 YLKN 500 (783)
Q Consensus 497 ~L~~ 500 (783)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.07 E-value=1.4 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=10.8
Q ss_pred CCCCeeeccCCcCccccChhhh
Q 047035 442 KELFLLDLSRNKFSGDLSATSV 463 (783)
Q Consensus 442 ~~L~~L~L~~n~l~~~i~~~~~ 463 (783)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 4454443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.07 E-value=1.4 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=10.8
Q ss_pred CCCCeeeccCCcCccccChhhh
Q 047035 442 KELFLLDLSRNKFSGDLSATSV 463 (783)
Q Consensus 442 ~~L~~L~L~~n~l~~~i~~~~~ 463 (783)
++|+.|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 34555555555554 4454443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.31 E-value=1.7 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.3
Q ss_pred CCCEEEccCCcCCC
Q 047035 127 SLTTLNLYYNRIGG 140 (783)
Q Consensus 127 ~L~~L~Ls~n~l~~ 140 (783)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.31 E-value=1.7 Score=25.99 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.3
Q ss_pred CCCEEEccCCcCCC
Q 047035 127 SLTTLNLYYNRIGG 140 (783)
Q Consensus 127 ~L~~L~Ls~n~l~~ 140 (783)
+|++|+|++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.22 E-value=0.042 Score=52.31 Aligned_cols=88 Identities=23% Similarity=0.233 Sum_probs=58.3
Q ss_pred CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCC
Q 047035 194 ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTS 273 (783)
Q Consensus 194 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 273 (783)
++......+.||++.|++.. .. ..++-++.+..|+++.|++. ..|..+.....++.+++..|..+ ..|.+++..++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 44555556666666665431 11 34555666777777777766 56777777777777777777766 56777777888
Q ss_pred CCEEeCcCCccc
Q 047035 274 LEYLALSDNNFQ 285 (783)
Q Consensus 274 L~~L~L~~n~l~ 285 (783)
++++++.++.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888777777654
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.35 E-value=0.43 Score=44.87 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=14.0
Q ss_pred CCEEeCCCCCCCCCCcccccCCCCCCEEEccCC
Q 047035 104 LKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYN 136 (783)
Q Consensus 104 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n 136 (783)
++.+|-+++.+..+..+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 334444444444333444444444444444443
No 86
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=58.47 E-value=8.1 Score=23.57 Aligned_cols=18 Identities=39% Similarity=0.999 Sum_probs=11.3
Q ss_pred CCCCcCCCCCCCCcccce
Q 047035 15 ILTSWVDDGISDCCDWER 32 (783)
Q Consensus 15 ~~~~W~~~~~~~~c~w~g 32 (783)
++..|.-++..|||.|+-
T Consensus 3 ~l~~~~Cssdk~CCg~tp 20 (30)
T PF08093_consen 3 VLTFWRCSSDKDCCGWTP 20 (30)
T ss_dssp C-SSSB-SSCCCCCTT--
T ss_pred EeeceeecCCcccccCcc
Confidence 467886666689999984
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.10 E-value=9.1 Score=23.02 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=6.5
Q ss_pred CCCCeEeCCCCCCC
Q 047035 151 RNLKALNLSWNGIS 164 (783)
Q Consensus 151 ~~L~~L~L~~n~l~ 164 (783)
++|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34444444444443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.73 E-value=11 Score=23.09 Aligned_cols=14 Identities=57% Similarity=0.660 Sum_probs=11.3
Q ss_pred CCCCEEecCCCcCc
Q 047035 658 QKLGILDLSHNKLN 671 (783)
Q Consensus 658 ~~L~~L~ls~N~l~ 671 (783)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 56888999998884
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=50.45 E-value=12 Score=22.57 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=10.4
Q ss_pred cccEEeCCCCCCCccCh
Q 047035 322 QLKVLQLPNCNLKVIPS 338 (783)
Q Consensus 322 ~L~~L~L~~~~l~~ip~ 338 (783)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666666654
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=45.81 E-value=60 Score=35.15 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=53.2
Q ss_pred CcEEECCCCcccccCccc--ccCCCCCCEEeCCCccccc-cccccc---------CcCCCcEEEccCCcccccCch---h
Q 047035 541 LDVLLMSKNHLEGNIPVQ--INNFRQLQLLDLSENRLFG-SIASSL---------NLSSIMHLYLQNNALSGQIPS---T 605 (783)
Q Consensus 541 L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~-~~p~~~---------~l~~L~~L~L~~n~l~~~~p~---~ 605 (783)
+++|..+.|.+.|+.-.. +..-++.+.+++.+-.-.. .++... ..--+..+.++.|.+....-. .
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 666667766666554332 2333455566554432210 011000 122356677777776533222 2
Q ss_pred hhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCCcc
Q 047035 606 LFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYL 646 (783)
Q Consensus 606 l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l 646 (783)
+..-+.+..|++++|..... +|..+..-..++....+.|..
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 23446788899998876432 444444444555555554433
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.20 E-value=19 Score=39.63 Aligned_cols=42 Identities=36% Similarity=0.335 Sum_probs=22.2
Q ss_pred hcCCCCcEEEccCc--cccCcccCCccCCCCccEEEcccCcCCC
Q 047035 366 QNNTKLEVLRLSNN--SFSGILQLPKVKHDLLRHLDISNNNLTG 407 (783)
Q Consensus 366 ~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 407 (783)
+..|+|.+|+|++| .+.....+...+...|++|-+.+|.+..
T Consensus 241 q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 241 QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34566666666666 3333333333344446666666666543
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.23 E-value=89 Score=33.92 Aligned_cols=85 Identities=24% Similarity=0.139 Sum_probs=41.4
Q ss_pred CCEEEccCccCcccCCcc-cccCCCCCcEEEccCccccc-cCCccc----cC----CCCCCEEEcccccCCccCch---h
Q 047035 201 LKVLGMRNNLLNGSVESK-GICELKNLTELDLGENNLEG-QLPWCL----SD----LIGLKVLDISFNHLSGNLPS---V 267 (783)
Q Consensus 201 L~~L~L~~n~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~-~~~~~l----~~----l~~L~~L~L~~n~l~~~~p~---~ 267 (783)
+++|....|.+.++.... .+..-+..+.+++..-.-.. ..+... .. .--+..+.++.|.+....-. .
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 777777777776554321 12233455566554322100 011111 10 11255666677766532222 2
Q ss_pred hcCCCCCCEEeCcCCccc
Q 047035 268 IANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 268 l~~l~~L~~L~L~~n~l~ 285 (783)
+..-+.+..|++++|...
T Consensus 436 l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hccCcccccccccCCCcc
Confidence 334566788888887643
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.93 E-value=39 Score=20.00 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=5.1
Q ss_pred CCCCEEeCCCC
Q 047035 102 KKLKILNLNYN 112 (783)
Q Consensus 102 ~~L~~L~Ls~n 112 (783)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.49 E-value=34 Score=37.72 Aligned_cols=37 Identities=32% Similarity=0.345 Sum_probs=19.2
Q ss_pred cCCCCcEEEccCccccCcccCCc--cCCCCccEEEcccC
Q 047035 367 NNTKLEVLRLSNNSFSGILQLPK--VKHDLLRHLDISNN 403 (783)
Q Consensus 367 ~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~L~~n 403 (783)
+.+.+..+.|++|++..+..+.. ...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555666666666554432221 33455555555555
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.63 E-value=52 Score=43.80 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=23.8
Q ss_pred ECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 616 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
||++|+|...-+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577787766555667777778888888777763
Done!