Query 047035
Match_columns 783
No_of_seqs 879 out of 5249
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 11:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.2E-81 1.4E-85 738.1 49.2 640 12-678 27-700 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-73 4.9E-78 673.8 43.7 644 75-777 51-729 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-58 6.7E-63 540.2 52.5 576 74-675 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-57 5E-62 532.8 53.5 585 28-651 4-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 8.2E-55 2.8E-59 502.7 47.6 539 77-676 15-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.7E-53 2.3E-57 486.7 46.2 519 74-651 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-53 1.3E-57 488.7 41.1 519 74-676 32-563 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-52 1.6E-56 479.6 41.5 515 128-681 13-543 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5E-50 1.7E-54 477.9 35.1 519 102-675 24-564 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-49 1.9E-53 468.8 36.4 516 129-682 7-550 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.1E-47 3.6E-52 440.2 39.3 513 128-677 9-537 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.8E-47 6.2E-52 438.3 39.0 499 74-652 28-536 (570)
13 4eco_A Uncharacterized protein 100.0 3.7E-49 1.3E-53 454.8 21.6 477 15-576 56-600 (636)
14 4ecn_A Leucine-rich repeat pro 100.0 4.8E-47 1.6E-51 443.3 27.2 474 18-576 285-840 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-46 1.5E-50 424.4 34.3 484 154-676 8-515 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-46 3.4E-50 421.6 34.2 491 125-651 4-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-43 3.9E-48 412.4 40.6 506 75-647 53-580 (635)
18 4eco_A Uncharacterized protein 100.0 4.4E-46 1.5E-50 429.2 18.3 340 330-678 192-585 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-44 4.8E-49 408.9 26.2 456 154-676 3-486 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 7.9E-43 2.7E-47 405.3 38.8 514 40-624 52-581 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-43 1.2E-47 397.5 30.2 437 202-683 3-469 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 2.1E-43 7.1E-48 412.7 28.0 465 126-670 323-863 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-41 6.9E-46 386.3 27.6 463 149-676 29-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-40 4.2E-45 379.8 28.6 442 198-684 30-499 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.4E-39 4.7E-44 358.4 22.6 409 197-682 9-422 (454)
26 3v47_A TOLL-like receptor 5B a 100.0 2.7E-38 9.1E-43 351.4 30.1 389 228-676 14-413 (455)
27 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-38 9.9E-43 348.2 27.5 362 218-681 36-397 (457)
28 1jl5_A Outer protein YOPM; leu 100.0 3.6E-38 1.2E-42 347.1 27.5 427 174-681 9-439 (454)
29 3v47_A TOLL-like receptor 5B a 100.0 9.7E-37 3.3E-41 338.8 33.9 379 130-580 14-412 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.7E-40 327.7 29.2 169 96-285 36-204 (457)
31 1o6v_A Internalin A; bacterial 100.0 4.2E-35 1.4E-39 325.9 31.6 345 271-672 45-389 (466)
32 1o6v_A Internalin A; bacterial 100.0 2.5E-34 8.5E-39 319.6 32.9 346 246-648 44-389 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 2.5E-34 8.7E-39 321.1 24.6 351 324-680 14-365 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 5.2E-34 1.8E-38 318.5 26.8 320 348-673 15-335 (477)
35 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-35 1.9E-39 306.4 15.1 273 15-308 23-302 (313)
36 1ogq_A PGIP-2, polygalacturona 100.0 3.5E-33 1.2E-37 292.7 17.3 250 419-672 51-306 (313)
37 4fmz_A Internalin; leucine ric 100.0 1.4E-31 4.7E-36 285.9 29.8 305 342-671 42-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 8.8E-32 3E-36 292.1 27.5 310 343-673 44-354 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 8.2E-32 2.8E-36 292.4 26.9 309 72-406 43-352 (390)
40 4fmz_A Internalin; leucine ric 100.0 6.6E-31 2.3E-35 280.6 31.9 288 68-383 38-325 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.5E-31 1.2E-35 303.3 27.6 308 345-673 52-360 (597)
42 3oja_B Anopheles plasmodium-re 100.0 5.3E-31 1.8E-35 301.8 28.3 309 72-406 49-358 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-30 7.8E-35 274.4 24.6 287 370-669 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-30 2E-34 271.2 25.8 291 419-783 34-328 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-33 6.5E-38 312.9 -1.2 351 320-672 2-412 (461)
46 1xku_A Decorin; proteoglycan, 100.0 1.1E-29 3.8E-34 268.9 26.9 288 370-669 32-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-33 5E-38 313.8 -3.3 385 272-680 3-449 (461)
48 1xku_A Decorin; proteoglycan, 100.0 4.9E-29 1.7E-33 263.9 27.8 267 370-645 53-330 (330)
49 2z66_A Variable lymphocyte rec 100.0 6.4E-28 2.2E-32 252.5 21.8 231 443-675 29-265 (306)
50 2z80_A TOLL-like receptor 2, v 100.0 8.1E-29 2.8E-33 264.8 14.5 274 397-676 35-319 (353)
51 2z66_A Variable lymphocyte rec 100.0 4.3E-28 1.5E-32 253.8 19.3 281 396-682 10-298 (306)
52 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.5E-33 259.4 14.8 258 12-307 43-311 (328)
53 3ogk_B Coronatine-insensitive 100.0 2.1E-30 7.1E-35 297.9 0.0 410 68-481 67-527 (592)
54 3ogk_B Coronatine-insensitive 100.0 1.3E-29 4.6E-34 291.2 3.9 328 320-668 191-548 (592)
55 4fcg_A Uncharacterized protein 100.0 1.4E-27 4.7E-32 251.6 18.7 200 466-669 103-312 (328)
56 2z80_A TOLL-like receptor 2, v 99.9 1.4E-27 4.9E-32 255.1 17.1 278 368-651 30-318 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-27 1.1E-31 244.4 19.2 237 443-681 33-271 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 2.2E-26 7.7E-31 254.4 25.0 249 395-672 56-304 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 1.8E-26 6.1E-31 254.3 24.1 246 395-647 45-292 (440)
60 1ozn_A Reticulon 4 receptor; N 99.9 8.2E-27 2.8E-31 241.3 20.1 227 445-675 14-242 (285)
61 1wwl_A Monocyte differentiatio 99.9 2.6E-28 9E-33 255.7 7.7 246 417-672 42-310 (312)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-28 8.9E-33 256.4 6.1 267 396-677 13-282 (317)
63 3zyj_A Leucine-rich repeat-con 99.9 1E-25 3.4E-30 248.3 25.4 245 422-671 47-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 1.1E-25 3.9E-30 248.8 25.0 249 370-625 55-305 (452)
65 1wwl_A Monocyte differentiatio 99.9 1.1E-27 3.8E-32 251.0 5.9 248 390-648 40-310 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-25 2.3E-29 248.5 27.8 268 371-683 42-309 (622)
67 2p1m_B Transport inhibitor res 99.9 1.8E-29 6.2E-34 290.3 -11.1 432 68-527 60-543 (594)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-26 7.1E-31 241.9 13.0 249 419-682 11-262 (317)
69 3oja_A Leucine-rich immune mol 99.9 2.3E-26 7.7E-31 255.7 12.3 235 418-666 34-270 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1E-24 3.4E-29 247.1 25.0 268 322-658 41-308 (622)
71 2p1m_B Transport inhibitor res 99.9 7.2E-28 2.4E-32 277.0 -1.7 331 320-671 183-544 (594)
72 3oja_A Leucine-rich immune mol 99.9 2E-25 7E-30 247.9 14.7 229 439-682 31-262 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 2.9E-24 1E-28 221.0 20.7 209 467-676 28-242 (276)
74 3rfs_A Internalin B, repeat mo 99.9 8.4E-25 2.9E-29 224.2 14.3 226 444-683 21-247 (272)
75 2o6q_A Variable lymphocyte rec 99.9 5.2E-23 1.8E-27 210.7 24.3 216 25-285 2-218 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 1.4E-23 4.6E-28 216.0 19.8 205 444-650 30-240 (276)
77 3rfs_A Internalin B, repeat mo 99.9 3.7E-24 1.3E-28 219.4 13.0 227 419-659 20-247 (272)
78 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.7E-27 208.3 23.0 204 469-675 18-222 (270)
79 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 5.7E-27 208.6 21.0 202 465-673 8-210 (290)
80 3goz_A Leucine-rich repeat-con 99.9 3.9E-24 1.3E-28 229.0 6.1 257 424-681 4-307 (362)
81 2ca6_A RAN GTPase-activating p 99.9 2.1E-24 7E-29 233.6 3.3 188 488-675 91-320 (386)
82 1p9a_G Platelet glycoprotein I 99.9 8.1E-22 2.8E-26 203.5 20.2 201 439-647 7-208 (290)
83 4glp_A Monocyte differentiatio 99.9 7.3E-23 2.5E-27 214.2 11.9 224 443-672 65-308 (310)
84 2ast_B S-phase kinase-associat 99.9 7.4E-24 2.5E-28 224.8 4.3 253 394-680 48-315 (336)
85 2ast_B S-phase kinase-associat 99.9 6.5E-23 2.2E-27 217.5 11.1 221 443-668 48-282 (336)
86 3goz_A Leucine-rich repeat-con 99.9 9.7E-24 3.3E-28 225.9 3.5 276 398-682 3-325 (362)
87 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.2E-28 227.5 2.7 242 409-651 24-320 (386)
88 3m19_A Variable lymphocyte rec 99.9 3.6E-21 1.2E-25 194.6 19.7 182 492-676 15-197 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 2.2E-21 7.6E-26 194.7 14.5 195 468-668 32-236 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 3.8E-21 1.3E-25 193.0 16.1 197 443-645 32-237 (239)
91 4glp_A Monocyte differentiatio 99.9 1.5E-21 5.2E-26 204.1 12.6 229 394-648 65-308 (310)
92 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4.1E-25 196.7 19.0 195 69-285 36-230 (308)
93 1h6u_A Internalin H; cell adhe 99.8 1.6E-20 5.5E-25 195.8 18.4 191 467-672 41-231 (308)
94 3m19_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 187.7 19.6 179 468-649 15-194 (251)
95 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.4E-25 210.7 17.0 189 468-683 60-255 (571)
96 2o6s_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 181.9 14.0 179 494-682 10-189 (208)
97 2o6s_A Variable lymphocyte rec 99.8 5.9E-20 2E-24 180.0 15.3 174 492-676 29-203 (208)
98 4ay9_X Follicle-stimulating ho 99.8 7E-20 2.4E-24 194.9 17.0 242 396-669 12-257 (350)
99 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.9E-24 192.4 18.8 228 445-681 12-245 (350)
100 3cvr_A Invasion plasmid antige 99.8 3.3E-19 1.1E-23 199.2 16.9 193 419-656 60-252 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.3E-23 170.1 16.2 156 518-676 14-171 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 5E-18 1.7E-22 167.4 16.2 153 518-673 14-167 (220)
103 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 176.4 14.9 171 70-260 42-212 (291)
104 2xot_A Amphoterin-induced prot 99.8 3E-18 1E-22 183.0 14.5 175 470-647 21-202 (361)
105 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 176.3 14.4 171 465-672 44-214 (291)
106 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.6E-22 166.3 17.1 155 517-675 21-176 (229)
107 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 193.4 14.7 192 418-625 21-212 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-17 4E-22 164.7 15.4 154 495-651 15-170 (220)
109 2v9t_B SLIT homolog 2 protein 99.7 2.2E-17 7.5E-22 162.8 15.9 152 494-648 14-166 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.4E-22 188.0 16.8 172 70-285 39-210 (605)
111 3e6j_A Variable lymphocyte rec 99.7 6.8E-17 2.3E-21 160.4 17.1 155 493-651 21-176 (229)
112 4ezg_A Putative uncharacterize 99.7 2.1E-17 7.1E-22 160.1 12.8 152 514-672 43-195 (197)
113 2xot_A Amphoterin-induced prot 99.7 3.6E-17 1.2E-21 174.6 15.3 177 445-625 21-204 (361)
114 1xeu_A Internalin C; cellular 99.7 1.6E-17 5.3E-22 168.7 9.9 168 492-673 20-187 (263)
115 4ezg_A Putative uncharacterize 99.7 5.8E-17 2E-21 156.9 12.6 151 466-622 43-193 (197)
116 1dce_A Protein (RAB geranylger 99.7 2.2E-19 7.5E-24 202.0 -5.7 105 565-673 443-548 (567)
117 1dce_A Protein (RAB geranylger 99.7 5.7E-19 1.9E-23 198.6 -5.6 120 541-665 443-567 (567)
118 1w8a_A SLIT protein; signaling 99.7 3.1E-16 1.1E-20 151.0 13.4 132 542-676 11-144 (192)
119 1xeu_A Internalin C; cellular 99.7 5.4E-17 1.8E-21 164.7 8.2 170 441-649 18-187 (263)
120 4b8c_D Glucose-repressible alc 99.7 1.9E-17 6.7E-22 192.2 5.0 178 484-671 217-404 (727)
121 4b8c_D Glucose-repressible alc 99.6 7.8E-17 2.7E-21 187.1 5.2 178 460-647 217-404 (727)
122 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 143.5 11.9 131 539-671 24-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 140.1 11.3 127 539-667 17-149 (149)
124 3sb4_A Hypothetical leucine ri 99.6 1.5E-15 5E-20 160.0 12.0 285 344-641 25-328 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 142.5 11.0 135 515-652 24-164 (168)
126 1w8a_A SLIT protein; signaling 99.6 1.3E-15 4.5E-20 146.5 10.2 110 468-577 30-140 (192)
127 3sb4_A Hypothetical leucine ri 99.6 2.2E-15 7.7E-20 158.6 11.4 287 368-665 24-328 (329)
128 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.3E-20 138.3 10.0 127 515-643 17-149 (149)
129 2o6r_A Variable lymphocyte rec 99.6 9.5E-15 3.3E-19 138.7 13.5 131 542-675 10-141 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 1.3E-14 4.3E-19 139.6 13.8 129 542-674 13-142 (193)
131 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.4E-18 148.1 21.1 240 394-669 136-381 (401)
132 4fdw_A Leucine rich hypothetic 99.5 1.5E-13 5E-18 147.7 19.6 234 435-681 129-368 (401)
133 2wfh_A SLIT homolog 2 protein 99.5 5.8E-14 2E-18 134.9 14.1 127 518-648 13-140 (193)
134 4fs7_A Uncharacterized protein 99.5 2.8E-13 9.5E-18 146.3 20.8 146 436-591 247-393 (394)
135 2o6r_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 132.6 13.8 131 518-651 10-141 (177)
136 4fs7_A Uncharacterized protein 99.5 4.6E-13 1.6E-17 144.6 21.7 213 388-615 180-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.2E-20 151.6 -4.8 153 512-671 15-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 8E-14 2.7E-18 132.0 11.0 130 537-671 17-153 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.8E-18 131.1 10.3 130 512-647 16-153 (176)
140 1ds9_A Outer arm dynein; leuci 99.4 1.1E-15 3.8E-20 148.1 -6.4 160 464-647 15-185 (198)
141 3g39_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 123.7 11.8 109 565-675 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 120.6 11.8 107 566-674 15-121 (174)
143 4gt6_A Cell surface protein; l 99.4 1.4E-10 4.7E-15 125.1 26.1 84 194-280 58-145 (394)
144 4gt6_A Cell surface protein; l 99.3 8.8E-11 3E-15 126.6 23.0 108 171-282 58-170 (394)
145 3g39_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 117.8 11.7 105 542-649 12-117 (170)
146 2r9u_A Variable lymphocyte rec 99.3 1E-11 3.5E-16 116.9 11.4 104 542-648 15-119 (174)
147 3un9_A NLR family member X1; l 99.2 4E-13 1.4E-17 142.9 -1.3 185 467-671 72-283 (372)
148 3un9_A NLR family member X1; l 99.2 5.8E-13 2E-17 141.6 -2.0 166 515-680 72-261 (372)
149 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.8E-15 120.8 10.6 105 542-649 11-118 (347)
150 2ifg_A High affinity nerve gro 99.1 2.4E-10 8.2E-15 121.0 9.6 103 495-599 12-116 (347)
151 4h09_A Hypothetical leucine ri 99.0 3.5E-08 1.2E-12 105.6 23.0 133 436-573 211-343 (379)
152 4h09_A Hypothetical leucine ri 99.0 5.9E-08 2E-12 103.9 24.7 166 438-610 190-356 (379)
153 2ra8_A Uncharacterized protein 98.8 1.5E-09 5.3E-14 114.1 5.0 59 510-571 167-227 (362)
154 2ra8_A Uncharacterized protein 98.7 6.1E-09 2.1E-13 109.5 4.6 139 531-672 164-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 7.7E-08 2.6E-12 91.2 3.4 114 558-671 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.6E-07 5.5E-12 88.9 3.7 63 585-647 92-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.5E-07 5E-12 93.7 2.6 65 609-675 169-237 (267)
158 3rw6_A Nuclear RNA export fact 98.2 1E-06 3.5E-11 87.6 4.2 96 568-665 148-258 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.1E-05 3.7E-10 74.2 2.9 86 585-670 60-151 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.2E-05 4.1E-10 73.9 1.5 34 468-501 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00057 1.9E-08 64.0 5.3 86 585-670 69-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00014 4.7E-09 68.2 0.2 91 71-161 38-136 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0046 1.6E-07 53.9 6.3 57 614-672 12-69 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.017 6E-07 50.2 5.9 37 611-647 32-68 (130)
165 2lz0_A Uncharacterized protein 43.4 32 0.0011 27.6 4.9 44 63-111 9-52 (100)
166 2lz0_A Uncharacterized protein 36.5 60 0.0021 26.0 5.5 44 237-281 9-52 (100)
167 2gx1_A Neurotoxin MAGI-5; spid 32.3 24 0.00083 19.9 1.6 19 15-33 3-21 (29)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.2e-81 Score=738.12 Aligned_cols=640 Identities=29% Similarity=0.415 Sum_probs=517.0
Q ss_pred CCCCCCCcCCCCCCCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCC--ccCcccccCCCCCCEEeCCCCCCCCC
Q 047035 12 ADEILTSWVDDGISDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFP--ILNFSLFLPFQELQILDLSGNYFDGW 89 (783)
Q Consensus 12 ~~~~~~~W~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (783)
|. ++++|+. ++|||.|+||+|+ .++|+.+++++..+ .+. .+ +..+..+++|+.++++.+.+..
T Consensus 27 ~~-~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l--------~g~~~~l-~~~l~~L~~L~~l~~~~~~~~~- 91 (768)
T 3rgz_A 27 KN-LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPL--------NVGFSAV-SSSLLSLTGLESLFLSNSHING- 91 (768)
T ss_dssp TT-SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCC--------CEEHHHH-HHHTTTCTTCCEEECTTSCEEE-
T ss_pred cc-cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCc--------CCccCcc-ChhHhccCcccccCCcCCCcCC-
Confidence 44 8999974 3799999999998 68999999998765 211 02 2567889999999999887643
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCcc--cccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCc
Q 047035 90 NENKDYDSSGSSKKLKILNLNYNNFNDSVLP--YLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGA 167 (783)
Q Consensus 90 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~ 167 (783)
.+ ..++.+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+..|...+.++++|++|++++|.+++..
T Consensus 92 l~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 167 (768)
T 3rgz_A 92 SV----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167 (768)
T ss_dssp CC----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEET
T ss_pred Cc----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcC
Confidence 22 5789999999999999999988888 99999999999999999988877644589999999999999998766
Q ss_pred Cccc---cCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccc
Q 047035 168 TRLG---LGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCL 244 (783)
Q Consensus 168 ~~~~---l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 244 (783)
+. . ++++++|++|++++|.+.+..+ +..+++|++|++++|.+++.++ . ++++++|++|++++|.+.+.+|..+
T Consensus 168 ~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 168 VV-GWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp HH-HHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred Ch-hhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcccHHH
Confidence 53 3 7899999999999999987555 4889999999999999988777 3 9999999999999999999999999
Q ss_pred cCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCcccc
Q 047035 245 SDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLK 324 (783)
Q Consensus 245 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 324 (783)
..+++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|......+++|++|++++|.+....+..+..+++|+
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 321 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCC
T ss_pred hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCcc
Confidence 99999999999999999888765 8999999999999999999976555569999999999998877777888889999
Q ss_pred EEeCCCCCCC-ccChh-hhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccC--CCCccEEEc
Q 047035 325 VLQLPNCNLK-VIPSF-LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVK--HDLLRHLDI 400 (783)
Q Consensus 325 ~L~L~~~~l~-~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~L 400 (783)
+|++++|.+. .+|.. +..+++|++|++++|.+.+.+|..+....++|++|++++|.+++..+..... +++|++|++
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEEC
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEEC
Confidence 9999999988 88876 8889999999999999998888887633348999999999988764444433 778999999
Q ss_pred ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccc
Q 047035 401 SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFY 480 (783)
Q Consensus 401 ~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 480 (783)
++|++++.+|..+. .+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|++.
T Consensus 402 ~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 402 QNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred CCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCccc
Confidence 99999888888875 6889999999999999999999999999999999999998888765 468899999999999999
Q ss_pred ccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc
Q 047035 481 GHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN 560 (783)
Q Consensus 481 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 560 (783)
+.+|..+..+++|++|++++|++++.+|.+++.+++|++|++++|.+.+.+|..++++++|+.|++++|+++|.+|..+.
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCCCEEeCCCc----------------------cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035 561 NFRQLQLLDLSEN----------------------RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDL 617 (783)
Q Consensus 561 ~l~~L~~L~Ls~N----------------------~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 617 (783)
....+..+++..+ .+.+..+..+ .++.++.+++..|.+.|.+|..+..+++|+.|||
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 7665554444331 1122222222 3344444555555555555555555555555555
Q ss_pred cCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035 618 RDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF 678 (783)
Q Consensus 618 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 678 (783)
++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.||..+
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH
Confidence 5555555555555555555555555555555555555555555555555555555555544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-73 Score=673.82 Aligned_cols=644 Identities=30% Similarity=0.385 Sum_probs=550.4
Q ss_pred CCCEEeCCCCCCCCC---CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc-hhccCC
Q 047035 75 ELQILDLSGNYFDGW---NENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPS-QGLANL 150 (783)
Q Consensus 75 ~L~~L~Ls~n~l~~~---~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~l~~l 150 (783)
+++.|||+++.+.|. ++ .++.++++|+.++++.+.+. ..|..++.+++|++|+|++|.+.+.+|. ..++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC
T ss_pred cEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCC
Confidence 688999999998886 55 67889999999999998774 3568899999999999999999887663 268999
Q ss_pred CCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-C---cCCCCCCCEEEccCccCcccCCcccccCCCCC
Q 047035 151 RNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-E---LAPFRNLKVLGMRNNLLNGSVESKGICELKNL 226 (783)
Q Consensus 151 ~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 226 (783)
++|++|++++|.+....+...++++++|++|++++|.+++..+ . +.++++|++|++++|.+.+.++ +..+++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L 202 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNL 202 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTC
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcC
Confidence 9999999999999876664445889999999999999998776 4 7899999999999999987655 4889999
Q ss_pred cEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEecc
Q 047035 227 TELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKV 306 (783)
Q Consensus 227 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~ 306 (783)
++|++++|.+.+.+|. ++++++|++|++++|.+++.+|.+++++++|++|++++|.+.+.+|.. .+++|++|++++
T Consensus 203 ~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~ 278 (768)
T 3rgz_A 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAE 278 (768)
T ss_dssp CEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcC
Confidence 9999999999988887 999999999999999999999999999999999999999999888853 889999999999
Q ss_pred CcccccCCCCCCC-CccccEEeCCCCCCC-ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCc
Q 047035 307 SSNLRLKTENWIP-TFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI 384 (783)
Q Consensus 307 ~~~~~~~~~~~~~-~~~L~~L~L~~~~l~-~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 384 (783)
|.+....+..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 9887544444444 489999999999998 88889999999999999999999889987666899999999999999876
Q ss_pred ccCCccCCC-CccEEEcccCcCCCCCChhhhhh-cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhh
Q 047035 385 LQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIV-IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 462 (783)
Q Consensus 385 ~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 462 (783)
.+..+..++ +|++|++++|++++.+|..++.. +++|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~- 437 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS- 437 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-
Confidence 555555665 89999999999988888776521 678999999999999999999999999999999999998777765
Q ss_pred hhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCc
Q 047035 463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLD 542 (783)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 542 (783)
+..+++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.+++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 56889999999999999988898899999999999999999998999999999999999999999999999999999999
Q ss_pred EEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC---------C-------------ccc
Q 047035 543 VLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN---------N-------------ALS 599 (783)
Q Consensus 543 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~---------n-------------~l~ 599 (783)
+|++++|++++.+|..++.+++|++|++++|+++|.+|..+ ....+..+++.. + .+.
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998877 555444433332 1 245
Q ss_pred ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchh
Q 047035 600 GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFV 679 (783)
Q Consensus 600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 679 (783)
+..|..+..++.++.++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|.+++++++|+.|+|++|+++|.||..++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 56677777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCcccCCcceeeeecCCcccccccccccccccccCCCCccccccceEEEEeccceeeecCCccCcceeEecc
Q 047035 680 NMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQFVTKNRYEFYNGSNLNYMSGIDLS 759 (783)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ldls 759 (783)
+++.+.. ++ ++.|.+.|.++... ..++.|+.+|+|
T Consensus 678 ~L~~L~~-----------Ld----------------Ls~N~l~g~ip~~l------------------~~l~~L~~L~ls 712 (768)
T 3rgz_A 678 DLRGLNI-----------LD----------------LSSNKLDGRIPQAM------------------SALTMLTEIDLS 712 (768)
T ss_dssp GCTTCCE-----------EE----------------CCSSCCEECCCGGG------------------GGCCCCSEEECC
T ss_pred CCCCCCE-----------EE----------------CCCCcccCcCChHH------------------hCCCCCCEEECc
Confidence 8875431 21 23344444433221 356789999999
Q ss_pred CCcCcccCCccccCcCCC
Q 047035 760 YNELTGEIPSEIGELPKV 777 (783)
Q Consensus 760 ~N~l~g~ip~~~~~l~~L 777 (783)
+|+|+|+||+. +.+..+
T Consensus 713 ~N~l~g~iP~~-~~~~~~ 729 (768)
T 3rgz_A 713 NNNLSGPIPEM-GQFETF 729 (768)
T ss_dssp SSEEEEECCSS-SSGGGS
T ss_pred CCcccccCCCc-hhhccC
Confidence 99999999964 334333
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-58 Score=540.20 Aligned_cols=576 Identities=21% Similarity=0.230 Sum_probs=375.0
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035 74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL 153 (783)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L 153 (783)
+++++|+|++|.+++..+ ..++++++|++|+|++|.+++..|..++++++|++|+|++|.+++. |...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCC
Confidence 577777777777776655 5577777777777777777777777777777777777777777765 33357777777
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccc--cCCCCCcEEE
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGI--CELKNLTELD 230 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~l~~L~~L~ 230 (783)
++|++++|.+....+. .++++++|++|++++|.+++.++ .++.+++|++|++++|.+++..+ ..+ ..+++|++|+
T Consensus 100 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKLE 177 (680)
T ss_dssp SEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEEE
T ss_pred CEEECCCCccCccChh-HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-HHhhccccccccEEE
Confidence 7777777777665542 56777777777777777776655 56777777777777777764333 333 2456777777
Q ss_pred ccCccccccCCccccCCCCCCEEEcccccCCccCchhhc---CCCCCCEEeCcCCccceecChhhhcCCC--CCcEEEec
Q 047035 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA---NLTSLEYLALSDNNFQGEFPLSLLTNHS--NLEVLLLK 305 (783)
Q Consensus 231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p~~~l~~l~--~L~~L~l~ 305 (783)
+++|.+.+..|..+..+++|+.|++.++.+.......+. ..++|++|++++|.+.+..|. .+..++ +|++|+++
T Consensus 178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLS 256 (680)
T ss_dssp CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECT
T ss_pred CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECC
Confidence 777777766666777777777777777665432222111 246677777777766644442 344443 25555555
Q ss_pred cCcccccCCCCCCCCccccEEeCCCCCCC-ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCc
Q 047035 306 VSSNLRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGI 384 (783)
Q Consensus 306 ~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 384 (783)
+|.+.......+..+++|++|++++|.+. ..|..+..+++|+.|++++|...+.++.. .+..+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~----------------~lp~i 320 (680)
T 1ziw_A 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA----------------SLPKI 320 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEE
T ss_pred CCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc----------------ccccc
Confidence 55554444444444455555555555544 22334444445555555444332211100 00111
Q ss_pred ccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccccc--CCccccC--CCCCCeeeccCCcCccccCh
Q 047035 385 LQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGN--IPYSIGE--MKELFLLDLSRNKFSGDLSA 460 (783)
Q Consensus 385 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~--l~~L~~L~L~~n~l~~~i~~ 460 (783)
....+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+... .+..+.. .++|+.|++++|++++..|
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~- 398 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES- 398 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-
Confidence 11233455666666666666664433333 3556666666666654321 1112222 2456666666666663333
Q ss_pred hhhhcCCCCcEEECcCccccccCC-CcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccc--ccCCCCcCC
Q 047035 461 TSVIRCASLEYLDVSENNFYGHIF-PTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLS--GHIPCWIGN 537 (783)
Q Consensus 461 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~--~~~p~~l~~ 537 (783)
..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+. +.+|..+++
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 344566667777777766665444 45666677777777777776666666777777777777777765 456777777
Q ss_pred CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc--------ccc-CcCCCcEEEccCCcccccCchhhhc
Q 047035 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA--------SSL-NLSSIMHLYLQNNALSGQIPSTLFR 608 (783)
Q Consensus 538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~-~l~~L~~L~L~~n~l~~~~p~~l~~ 608 (783)
+++|+.|++++|++++..+..+..+++|++|++++|++.+..+ ..+ .+++|++|++++|+++...+..|.+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 7777777777777776666677777778888888887765321 124 7889999999999998444456899
Q ss_pred CCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchh-CCCCCCEEecCCCcCcccCC
Q 047035 609 STELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALC-QLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 609 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP 675 (783)
+++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+. .+++|+.|++++|++.+..+
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999999999877777788999999999999999988887787 79999999999999998766
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-57 Score=532.76 Aligned_cols=585 Identities=21% Similarity=0.207 Sum_probs=480.1
Q ss_pred cccceeEecC---------CCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCccc
Q 047035 28 CDWERVTCDA---------TAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSS 98 (783)
Q Consensus 28 c~w~gv~c~~---------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 98 (783)
|.++.+.|.. ...+++.++++++.+ ..+.+..|..+++|++|+|++|.+++..+ .++
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 69 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQL----------RRLPAANFTRYSQLTSLDVGFNTISKLEP----ELC 69 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCC----------CCCCGGGGGGGTTCSEEECCSSCCCCCCT----THH
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCC----------CCcCHHHHhCCCcCcEEECCCCccCccCH----HHH
Confidence 5556667753 234788999998865 23555679999999999999999998877 788
Q ss_pred CCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCC
Q 047035 99 GSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNL 178 (783)
Q Consensus 99 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 178 (783)
+++++|++|+|++|.+++..+..|+++++|++|+|++|.+.+..| ..++++++|++|++++|.+.+..+. .++++++|
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 147 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENL 147 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCch-hhcccccC
Confidence 999999999999999997766789999999999999999988755 4799999999999999999887663 68899999
Q ss_pred CEEECcCCcCcccCC-C--cCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCcccc---CCCCCCE
Q 047035 179 EVLDLSANRISGSLT-E--LAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLS---DLIGLKV 252 (783)
Q Consensus 179 ~~L~Ls~n~~~~~~~-~--l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~ 252 (783)
++|++++|.+++.++ . ...+++|++|++++|.+++..+ ..+..+++|+.|++.++.+.......+. ..++|+.
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 999999999988766 3 3467899999999999986555 7889999999999999987643222221 3478999
Q ss_pred EEcccccCCccCchhhcCCCC--CCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCC
Q 047035 253 LDISFNHLSGNLPSVIANLTS--LEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPN 330 (783)
Q Consensus 253 L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 330 (783)
|++++|.+++..|.++.+++. |++|++++|.+.+. +...++.+++|++|++++|.+.......+..+++|++|++++
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc-CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 999999999999999988865 99999999999854 445689999999999999999888888899999999999998
Q ss_pred CCCC------ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCc
Q 047035 331 CNLK------VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNN 404 (783)
Q Consensus 331 ~~l~------~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 404 (783)
|... .+|. ++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 306 ~~~~~~~~~~~lp~---------------------i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 306 SFTKQSISLASLPK---------------------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CBCCC------CCE---------------------ECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred hhhhcccccccccc---------------------cChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 7544 2221 111112245555666666665555544445556666666666665
Q ss_pred CCCC-CChhhhhh--cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035 405 LTGM-LPQNMGIV--IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481 (783)
Q Consensus 405 l~~~-~p~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 481 (783)
+... ++...+.. .++|+.|++++|++++..|.++..+++|+.|++++|.+.+.++...+..+++|++|++++|++.+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 444 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce
Confidence 4322 22222211 35899999999999988899999999999999999999888887778899999999999999998
Q ss_pred cCCCcccCCCCccEEEccCcccc--cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc---
Q 047035 482 HIFPTYMNLTQLRWLYLKNNHFT--GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP--- 556 (783)
Q Consensus 482 ~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--- 556 (783)
..+..|..+++|+.|++++|.+. +..|..+..+++|++|++++|.+++..|..++++++|++|++++|++++..+
T Consensus 445 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 445 LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 88888999999999999999986 5678889999999999999999998888889999999999999999986422
Q ss_pred -----ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035 557 -----VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630 (783)
Q Consensus 557 -----~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 630 (783)
..+.++++|++|++++|++....+..+ ++++|++|++++|++++..+..|.++++|+.|++++|++++..|..+
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 237889999999999999985444556 89999999999999997777778899999999999999999888888
Q ss_pred c-CCcCCCEEeCcCCcccccCC
Q 047035 631 N-NHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 631 ~-~l~~L~~L~L~~N~l~~~~p 651 (783)
. .+++|+.|++++|.+.+.-+
T Consensus 605 ~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 605 GPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHHTTCSEEECTTCCCCBCCC
T ss_pred cccccccCEEEccCCCcccCCc
Confidence 7 78999999999999987644
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-55 Score=502.65 Aligned_cols=539 Identities=19% Similarity=0.165 Sum_probs=420.2
Q ss_pred CEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeE
Q 047035 77 QILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKAL 156 (783)
Q Consensus 77 ~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L 156 (783)
+.++.++..++..+ ..+ .+++++|+|++|.+++..|..|+++++|++|+|++|.+.+..|. .|+++++|++|
T Consensus 15 ~~~~c~~~~l~~iP-----~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGLNEIP-----GTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCCSSCC-----TTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEE
T ss_pred ceEECCCCCcccCc-----CCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCee
Confidence 46778777776443 222 24688888888888877788888888888888888888877663 68888888888
Q ss_pred eCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCcc
Q 047035 157 NLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN 235 (783)
Q Consensus 157 ~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 235 (783)
++++|.+....+. .++++++|++|++++|.+++..+ .++.+++|++|++++|.+.+... ..+..+++|++|++++|.
T Consensus 87 ~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 87 VLTANPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp ECTTCCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSC
T ss_pred eCCCCcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCc
Confidence 8888888766553 67778888888888888776544 66777777777777777764222 234446777777777777
Q ss_pred ccccCCccccCCCCCC--EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccC
Q 047035 236 LEGQLPWCLSDLIGLK--VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLK 313 (783)
Q Consensus 236 l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 313 (783)
+.+..|..++.+++|+ +|++++|.+++..|..+. ..+|++|++++|.. ++ ..+..+..+....+
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~-~~~~~l~~~~l~~l--------- 230 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LL-VIFKGLKNSTIQSL--------- 230 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HH-HHHHHTTTCEEEEE---------
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HH-HHhhhccccchhhe---------
Confidence 6666566666666666 666667766655554443 34566666666642 11 12223333322211
Q ss_pred CCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcC--CCCcEEEccCccccCcccCCccC
Q 047035 314 TENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNN--TKLEVLRLSNNSFSGILQLPKVK 391 (783)
Q Consensus 314 ~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~ 391 (783)
.+... ..+... .++...+..+ .+|+.|++++|.++++.+..+..
T Consensus 231 -------------~~~~~------------~~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 231 -------------WLGTF------------EDMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp -------------ECCCC------------TTSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred -------------echhh------------cccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence 11110 000000 1111111122 26788888888888876666788
Q ss_pred CCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcE
Q 047035 392 HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEY 471 (783)
Q Consensus 392 ~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 471 (783)
+++|++|++++|+++ .+|..+. .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++...+..+++|++
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 889999999999888 7887764 68899999999999998888899999999999999999988888888889999999
Q ss_pred EECcCccccccC--CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCC-cCCCCCCcEEECCC
Q 047035 472 LDVSENNFYGHI--FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCW-IGNFSYLDVLLMSK 548 (783)
Q Consensus 472 L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~ 548 (783)
|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.. +.++++|++|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 999999998765 678899999999999999999888999999999999999999999876654 89999999999999
Q ss_pred CcccccCcccccCCCCCCEEeCCCcccccc-cc--ccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGS-IA--SSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624 (783)
Q Consensus 549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p--~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 624 (783)
|.+++..|..+..+++|++|++++|++.+. ++ ..+ .+++|++|++++|++++..|..|.++++|+.|++++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 999999999999999999999999999873 22 445 89999999999999999999999999999999999999999
Q ss_pred CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
..|+++..++.| .|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999 999999999999898999999999999999999987764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-53 Score=486.67 Aligned_cols=519 Identities=22% Similarity=0.208 Sum_probs=378.7
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035 74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL 153 (783)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L 153 (783)
+++++|++++|.+++..+ ..++++++|++|+|++|.+.+..|..|+++++|++|+|++|.+.+..|. .++++++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN----TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCCSEECT----TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTC
T ss_pred CcCcEEEccCCccCcCCh----hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccc
Confidence 479999999999998777 7899999999999999999988899999999999999999999988774 79999999
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-CCcCCCCCCCEEEccCccCcccCCcccccCCCCCc--EEE
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-TELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT--ELD 230 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~--~L~ 230 (783)
++|++++|.++...+. .++++++|++|++++|.+++.. +.+..+++|++|++++|.+++..+ ..++.+++|+ +|+
T Consensus 108 ~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLN 185 (606)
T ss_dssp CEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH-HHHHTTTTCCSEEEE
T ss_pred cEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh-hhhhhhcccceeEEe
Confidence 9999999999987553 6899999999999999999854 566679999999999999985444 7789999999 999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310 (783)
Q Consensus 231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~ 310 (783)
+++|.+.+..|..+.. .+|++|++++|. .++..+..+.+++...+....+. .+....+
T Consensus 186 l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~------------~~~~~~i------ 243 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE------------DMDDEDI------ 243 (606)
T ss_dssp CTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT------------TSCCCCC------
T ss_pred cCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhc------------ccccccc------
Confidence 9999999877766654 689999999986 45566677766655444333221 1110000
Q ss_pred ccCCCCCCCC--ccccEEeCCCCCCCccChh-hhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccC
Q 047035 311 RLKTENWIPT--FQLKVLQLPNCNLKVIPSF-LLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL 387 (783)
Q Consensus 311 ~~~~~~~~~~--~~L~~L~L~~~~l~~ip~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~ 387 (783)
....+... .+++++++++|.++.++.. +..+++|++|++++|.+. .+|..+
T Consensus 244 --~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l----------------------- 297 (606)
T 3t6q_A 244 --SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL----------------------- 297 (606)
T ss_dssp --CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-----------------------
T ss_pred --ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-----------------------
Confidence 01111111 1455555555555544332 444455555555555544 344332
Q ss_pred CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc-cccCCCCCCeeeccCCcCccccC-hhhhhc
Q 047035 388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY-SIGEMKELFLLDLSRNKFSGDLS-ATSVIR 465 (783)
Q Consensus 388 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~i~-~~~~~~ 465 (783)
..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+... ...+..
T Consensus 298 --~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 298 --VGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp --CSCTTCCEEECTTCCCSBGGGGCG-GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred --cccccCCEEECccCCcCcCchhhh-hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 334445555555555443333333 2455566666666655544443 35666666666666666653320 223456
Q ss_pred CCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccc-ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA-GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 544 (783)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 544 (783)
+++|++|++++|++.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..++.+++|++|
T Consensus 375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454 (606)
T ss_dssp CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence 67777777777777766666777777777777777777765543 36777888888888888887777788888888888
Q ss_pred ECCCCccccc---CcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 545 LMSKNHLEGN---IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 545 ~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
++++|++++. .+..+..+++|++|++++|++++..|..+ .+++|++|++++|++++..|..+.+++.| .|++++|
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 8888888762 23567788888888888888888777777 78888888888888888888888888888 8999999
Q ss_pred ccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
++++..|..+..+++|+.|++++|++.+..+
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9988888888888899999999998886554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-53 Score=488.66 Aligned_cols=519 Identities=19% Similarity=0.152 Sum_probs=325.5
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035 74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL 153 (783)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L 153 (783)
+++++|+|++|.+++..+ ..++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|. .|+++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTC
T ss_pred CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccC
Confidence 566777777766665554 4566666666666666666665566666666666666666666665443 56666666
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcc-cCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEc
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISG-SLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDL 231 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 231 (783)
++|++++|.+....+. .++++++|++|++++|.+++ .++ .++++++|++|++++|.+
T Consensus 107 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l-------------------- 165 (606)
T 3vq2_A 107 ENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-------------------- 165 (606)
T ss_dssp CEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC--------------------
T ss_pred CEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc--------------------
Confidence 6666666666555432 45566666666666665553 112 445555555555555544
Q ss_pred cCccccccCCccccCCCCCC----EEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035 232 GENNLEGQLPWCLSDLIGLK----VLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307 (783)
Q Consensus 232 ~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~ 307 (783)
.+..|..++.+++|+ +|++++|.+++..+..+... +|++|++++|.+.+......+.+++.++.+.+...
T Consensus 166 -----~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~ 239 (606)
T 3vq2_A 166 -----QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239 (606)
T ss_dssp -----CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred -----eecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence 444344343333322 45555555443333332222 45555555554443333334455555555444322
Q ss_pred cccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEc-cCCcccCCCChhhhhcCCCCcEEEccCccccCccc
Q 047035 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDL-SSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQ 386 (783)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 386 (783)
....... +..+ . ...+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+..+.
T Consensus 240 ~~~~~~~--------l~~~--~----~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~- 301 (606)
T 3vq2_A 240 EFKDERN--------LEIF--E----PSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE- 301 (606)
T ss_dssp CCTTSCC--------CSCC--C----GGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-
T ss_pred ccccCCc--------cccc--C----hHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh-
Confidence 2110000 0000 0 0111111111 3444555 44445544444 234555555555555554432
Q ss_pred CCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcC
Q 047035 387 LPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466 (783)
Q Consensus 387 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l 466 (783)
.+.. +++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.+ .+..+
T Consensus 302 -~l~~-------------------------~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~---~~~~l 349 (606)
T 3vq2_A 302 -DVPK-------------------------HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF---KKVAL 349 (606)
T ss_dssp -CCCT-------------------------TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---CCCCC
T ss_pred -hccc-------------------------cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---hhccC
Confidence 2233 44555555555555 3445 23 5556666666666444333 23456
Q ss_pred CCCcEEECcCcccccc--CCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcE
Q 047035 467 ASLEYLDVSENNFYGH--IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDV 543 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~ 543 (783)
++|++|++++|++.+. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..| ..+.++++|++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 6666666666666654 25556667777777777777764 45667777888888888888877766 67788888888
Q ss_pred EECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCc
Q 047035 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK 621 (783)
Q Consensus 544 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 621 (783)
|++++|++++..|..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|++++..|..+.++++|++|++++|+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 8888888888888888888888888888888887 367767 88899999999999988888899999999999999999
Q ss_pred cccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCcCcccCCc
Q 047035 622 FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 622 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~ 676 (783)
+++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.|++++|++.+..|.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99989999999999999999999998 6787799997 599999999999987764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-52 Score=479.63 Aligned_cols=515 Identities=19% Similarity=0.172 Sum_probs=413.9
Q ss_pred CCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEc
Q 047035 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGM 206 (783)
Q Consensus 128 L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L 206 (783)
-++++.+++.++.+ |. .+. +++++|++++|.+++..+. .++++++|++|++++|.+++..+ .++++++|++|++
T Consensus 13 ~~~~~c~~~~l~~i-p~-~~~--~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKV-PD-DIP--SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSC-CT-TSC--TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccC-CC-CCC--CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 46788888888775 43 333 7899999999998877663 68889999999999999888766 7888999999999
Q ss_pred cCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccc
Q 047035 207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
++|.+++..| ..++++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.
T Consensus 88 s~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 88 TGNPIQSFSP-GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccccCh-hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9998875545 778889999999999998887776788889999999999998875 56888888999999999998888
Q ss_pred eecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhh
Q 047035 286 GEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLM 365 (783)
Q Consensus 286 ~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 365 (783)
+..+ ..++.+++|+. .++++++++|.++.++.......+|+.|++++|.+.+.......
T Consensus 167 ~~~~-~~~~~l~~L~~--------------------~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~ 225 (606)
T 3vq2_A 167 TITV-NDLQFLRENPQ--------------------VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225 (606)
T ss_dssp EECT-TTTHHHHHCTT--------------------CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHH
T ss_pred ecCh-hhhhhhhcccc--------------------ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHh
Confidence 5433 33444433320 12345666666665555555555667777777666533333333
Q ss_pred hcCCCCcEEEccCccccCcccCC------cc--CCCCccEEEc-ccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035 366 QNNTKLEVLRLSNNSFSGILQLP------KV--KHDLLRHLDI-SNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY 436 (783)
Q Consensus 366 ~~l~~L~~L~L~~n~l~~~~~~~------~~--~~~~L~~L~L-~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 436 (783)
.+++.++.+++..+.+....... +. ..-.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+. .+|
T Consensus 226 ~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~- 301 (606)
T 3vq2_A 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE- 301 (606)
T ss_dssp HTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-
T ss_pred ccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccch-hhh-
Confidence 46666766666544433221111 11 1124667777 67777777776 357899999999999996 566
Q ss_pred cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccc--cccccccC
Q 047035 437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGK--IKAGLLNS 514 (783)
Q Consensus 437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~~ 514 (783)
.+..+++|+.|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred hccccccCCEEEcccccC-ccccc--C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 889999999999999999 58883 3 8999999999999665544 577899999999999999876 37888999
Q ss_pred CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~ 592 (783)
++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++.+..|..+ .+++|++|+
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 999999999999985 66889999999999999999998887 689999999999999999999899888 999999999
Q ss_pred ccCCcccc-cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035 593 LQNNALSG-QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 593 L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
+++|++++ .+|..+..+++|++|++++|++++..|.++..+++|+.|++++|++++.+|..++++++|+.||+++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999998 47889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCcchhhc
Q 047035 672 GSIPSCFVNM 681 (783)
Q Consensus 672 g~iP~~~~~~ 681 (783)
.+|..+..+
T Consensus 535 -~~p~~~~~l 543 (606)
T 3vq2_A 535 -TSKGILQHF 543 (606)
T ss_dssp -CEESCGGGS
T ss_pred -ccCHhHhhh
Confidence 677776554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5e-50 Score=477.86 Aligned_cols=519 Identities=18% Similarity=0.177 Sum_probs=274.8
Q ss_pred CCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEE
Q 047035 102 KKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVL 181 (783)
Q Consensus 102 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 181 (783)
++|++|+|++|.+++..+..|+++++|++|+|++|...+.++...|.++++|++|+|++|.+....+. .++++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEe
Confidence 34444444444444444444444444444444444333322222444444444444444444443331 44455555555
Q ss_pred ECcCCcCcccCC---CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCC--CCCCEEEcc
Q 047035 182 DLSANRISGSLT---ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL--IGLKVLDIS 256 (783)
Q Consensus 182 ~Ls~n~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~ 256 (783)
+|++|.+++..+ .+.++++|++|++++|.+++..+...++++++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 555555544222 144555555555555555433333345555555555555555555555555544 556666666
Q ss_pred cccCCccCchhhcCCCC------CCEEeCcCCccceecChhhhcC--CCCCcEEEeccCcccccCCCCCCCCccccEEeC
Q 047035 257 FNHLSGNLPSVIANLTS------LEYLALSDNNFQGEFPLSLLTN--HSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQL 328 (783)
Q Consensus 257 ~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L 328 (783)
+|.+.+..|..++.+++ |++|++++|.+.+.++...... ..+++.+.+..+.... .+
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~ 247 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---------------GF 247 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---------------SS
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---------------cc
Confidence 66555555544444443 6666666665554444322211 1233333332111100 00
Q ss_pred CCCCCCccC-hhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCC
Q 047035 329 PNCNLKVIP-SFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG 407 (783)
Q Consensus 329 ~~~~l~~ip-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 407 (783)
..+.+.... ..+..+ ..++|+.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus 248 ~~~~l~~~~~~~f~~l-----------------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGL-----------------------ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp SCSSSTTGGGTTTTTT-----------------------TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE
T ss_pred cccccCCCChhhhhcc-----------------------ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC
Confidence 111111110 011111 12345555555555544433344455555555555555554
Q ss_pred CCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcc
Q 047035 408 MLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTY 487 (783)
Q Consensus 408 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 487 (783)
..|..+ ..+++|++|++++|.+++..|..+..+++|+.|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 305 ~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i----- 377 (844)
T 3j0a_A 305 IADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI----- 377 (844)
T ss_dssp ECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-----
T ss_pred CChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-----
Confidence 333333 24556666666666665555556666666666666666654 34444445566666666666665431
Q ss_pred cCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccC-CCCcCCCCCCcEEECCCCcccccCcc-cccCCCCC
Q 047035 488 MNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHI-PCWIGNFSYLDVLLMSKNHLEGNIPV-QINNFRQL 565 (783)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L 565 (783)
..+++|+.|++++|+++ .+|.. ..+++.|++++|.+.+.. +..++++++|+.|++++|++++..+. .+..+++|
T Consensus 378 ~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 378 HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL 453 (844)
T ss_dssp SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC
T ss_pred cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc
Confidence 12556666666666665 33332 345666666666666422 12244566666777777666644332 24445667
Q ss_pred CEEeCCCccccc-----cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEE
Q 047035 566 QLLDLSENRLFG-----SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVL 639 (783)
Q Consensus 566 ~~L~Ls~N~l~~-----~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 639 (783)
+.|++++|.+.+ ..+..+ .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|
T Consensus 454 ~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L 531 (844)
T 3j0a_A 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531 (844)
T ss_dssp CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEE
T ss_pred ccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEE
Confidence 777777776652 333444 667777777777777777777777777777777777777766555554 677777
Q ss_pred eCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 640 LLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 640 ~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
++++|++++.+|..+ .+|+.|++++|++.+..+
T Consensus 532 ~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 532 DISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred ECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 887777777777654 467777888877776554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-49 Score=468.82 Aligned_cols=516 Identities=21% Similarity=0.207 Sum_probs=379.2
Q ss_pred CEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEc
Q 047035 129 TTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGM 206 (783)
Q Consensus 129 ~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L 206 (783)
+..+.+++.++.+ |. -.++|++|+|++|.++...+. .++++++|++|+|++|...+.+ + .+.++++|++|++
T Consensus 7 ~~~dcs~~~L~~v-P~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQV-PQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCC-CS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCC-CC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 3566666776665 42 346777777777777766543 6777777777777777544433 3 6777777777777
Q ss_pred cCccCcccCCcccccCCCCCcEEEccCccccccCCcc--ccCCCCCCEEEcccccCCccCc-hhhcCCCCCCEEeCcCCc
Q 047035 207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC--LSDLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSDNN 283 (783)
Q Consensus 207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~ 283 (783)
++|.+.+..| ..++++++|++|++++|.+.+.+|.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.
T Consensus 81 s~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 7777765444 66777777777777777776655543 6777777777777777765543 456777777777777777
Q ss_pred cceecChhhhcCC--CCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCC
Q 047035 284 FQGEFPLSLLTNH--SNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFP 361 (783)
Q Consensus 284 l~~~~p~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p 361 (783)
+.+..+. .+..+ ++|+.|+++.|.+.......+..+.+ .+ ....|+.|++++|.+.+.++
T Consensus 160 i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~----------------~~-~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 160 IFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN----------------PF-RNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp CCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC----------------TT-TTCCBSEEBCSSCCSSTTTT
T ss_pred CCeeCHH-HcccccCCccceEECCCCccccccccchhhcCC----------------cc-ccCceeEEecCCCcCchhHH
Confidence 6644443 23333 55555555555443322222222111 00 01126666666666665555
Q ss_pred hhhhhc--CCCCcEEEccCc---------cccCcccCCcc--CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCC
Q 047035 362 TWLMQN--NTKLEVLRLSNN---------SFSGILQLPKV--KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKN 428 (783)
Q Consensus 362 ~~~~~~--l~~L~~L~L~~n---------~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n 428 (783)
..+... .+.++.+.++.+ .+.......+. ..++|+.|++++|.+.+..|..+ ..+++|++|++++|
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYN 300 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCC
Confidence 544322 245566665532 22222222332 24789999999999986656555 47899999999999
Q ss_pred cccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc
Q 047035 429 NFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK 508 (783)
Q Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 508 (783)
++.+..|..|..+++|+.|++++|.+.+ ++...+..+++|++|++++|++.+..+..|..+++|++|++++|.+++.
T Consensus 301 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-- 377 (844)
T 3j0a_A 301 KINKIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-- 377 (844)
T ss_dssp CCCEECTTTTTTCSSCCEEEEESCCCSC-CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred cCCCCChHHhcCCCCCCEEECCCCCCCc-cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc--
Confidence 9999989999999999999999999984 4445578999999999999999988888899999999999999999842
Q ss_pred cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC-cccccCCCCCCEEeCCCccccccccccc--Cc
Q 047035 509 AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI-PVQINNFRQLQLLDLSENRLFGSIASSL--NL 585 (783)
Q Consensus 509 ~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l 585 (783)
..+++|+.|++++|++. .+|.. ..+++.|++++|++++.. +..+.++++|++|++++|++++..+... .+
T Consensus 378 ---~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 450 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450 (844)
T ss_dssp ---SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSC
T ss_pred ---cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccC
Confidence 23789999999999998 55544 467999999999998642 3346689999999999999987655433 78
Q ss_pred CCCcEEEccCCccc-----ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCC
Q 047035 586 SSIMHLYLQNNALS-----GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL 660 (783)
Q Consensus 586 ~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 660 (783)
++|+.|++++|.++ +..|..|.++++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+. ++|
T Consensus 451 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred CccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence 99999999999997 45567788999999999999999999999999999999999999999987776665 899
Q ss_pred CEEecCCCcCcccCCcchhhcc
Q 047035 661 GILDLSHNKLNGSIPSCFVNML 682 (783)
Q Consensus 661 ~~L~ls~N~l~g~iP~~~~~~~ 682 (783)
+.||+++|+++|.+|..+.++.
T Consensus 529 ~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp CEEEEEEECCCCCCSCCCSSCC
T ss_pred cEEECCCCcCCCCChhHhCCcC
Confidence 9999999999999999877654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=440.20 Aligned_cols=513 Identities=20% Similarity=0.187 Sum_probs=406.9
Q ss_pred CCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEc
Q 047035 128 LTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGM 206 (783)
Q Consensus 128 L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L 206 (783)
.++++.++..++.+ |. .+ .+++++|++++|.++...+. .++++++|++|++++|++++..+ .++.+++|++|++
T Consensus 9 ~~~~~c~~~~l~~i-p~-~l--~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYKI-PD-NL--PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSSC-CS-SS--CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCcccc-CC-Cc--cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeC
Confidence 45677777666664 43 23 25799999999999887653 78899999999999999998776 7899999999999
Q ss_pred cCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccc
Q 047035 207 RNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 207 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
++|.+++. ++..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.
T Consensus 84 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 99998754 44789999999999999999987655578999999999999999986 46889999999999999999988
Q ss_pred eecChhhhcCCCCC----cEEEeccCcccccCCCCCCCCccccEEeCCCCCCC--ccChhhhcCCCCCEEEccCCcccCC
Q 047035 286 GEFPLSLLTNHSNL----EVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK--VIPSFLLHQYDFKFLDLSSNKLVGN 359 (783)
Q Consensus 286 ~~~p~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~--~ip~~l~~~~~L~~L~Ls~n~l~~~ 359 (783)
+ ++...++.+++| +.++++.|.+.......+... +|++|++++|... .++..+..++.++...+....+..
T Consensus 163 ~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~- 239 (570)
T 2z63_A 163 S-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN- 239 (570)
T ss_dssp E-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-
T ss_pred e-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-
Confidence 4 444456666666 566666665554444444333 4555555554322 333444444444443332211110
Q ss_pred CChhhhhcCCCCcEEEccCccccCcccCCccCCC--CccEEEcccC-cCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035 360 FPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHD--LLRHLDISNN-NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY 436 (783)
Q Consensus 360 ~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 436 (783)
...+ .......+..++ .++.++++++ .+.+.+|..+. .+++|++|++++|.+. .+|.
T Consensus 240 --------~~~l----------~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 240 --------EGNL----------EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp --------CSSC----------EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEEC-SCCB
T ss_pred --------chhh----------hhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccch-hhhh
Confidence 0001 011111111111 3567778777 66667776664 6899999999999998 6888
Q ss_pred cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccc--ccccccC
Q 047035 437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI--KAGLLNS 514 (783)
Q Consensus 437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~~ 514 (783)
.+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+
T Consensus 300 ~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp CCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence 88888 9999999999998 6776 3678999999999998876554 68899999999999998654 6778899
Q ss_pred CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~ 592 (783)
++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..| ..+..+++|++|++++|++.+..|..+ .+++|++|+
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 9999999999999966555 9999999999999999998766 578999999999999999999888888 899999999
Q ss_pred ccCCccc-ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc
Q 047035 593 LQNNALS-GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 593 L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
+++|.++ +.+|..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..|..+.++++|+.|++++|+++
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 9999998 679999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred ccCCcc
Q 047035 672 GSIPSC 677 (783)
Q Consensus 672 g~iP~~ 677 (783)
|.+|..
T Consensus 532 ~~~~~~ 537 (570)
T 2z63_A 532 CSCPRI 537 (570)
T ss_dssp CCTTTT
T ss_pred CCCcch
Confidence 999863
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=438.26 Aligned_cols=499 Identities=21% Similarity=0.191 Sum_probs=280.8
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCC
Q 047035 74 QELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNL 153 (783)
Q Consensus 74 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L 153 (783)
+++++|++++|.+++..+ .++..+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..| ..|+++++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCcccc
Confidence 356666666666555444 445556666666666665555555555556666666666665555433 245555555
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccC
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGE 233 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~ 233 (783)
++|++++|.+...... .++++++|++|++++|.+++. .+| ..++++++|++|++++
T Consensus 103 ~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~----------------------~lp-~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF----------------------KLP-EYFSNLTNLEHLDLSS 158 (570)
T ss_dssp CEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCC----------------------CCC-GGGGGCTTCCEEECTT
T ss_pred ccccccccccccCCCc-cccccccccEEecCCCcccee----------------------cCh-hhhcccCCCCEEeCcC
Confidence 5555555555554332 345555555555555555431 122 3344444444444444
Q ss_pred ccccccCCccccCCCCC----CEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcc
Q 047035 234 NNLEGQLPWCLSDLIGL----KVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSN 309 (783)
Q Consensus 234 n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~ 309 (783)
|.+.+..+..++.+++| +.|++++|.+++..|..+..+ +|++|++++|..........+..++.++...+.....
T Consensus 159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 44444444444444444 445555555544444444333 4555555544322111112344444444443322111
Q ss_pred cccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCC-cccCCCChhhhhcCCCCcEEEccCccccCcccCC
Q 047035 310 LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSN-KLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLP 388 (783)
Q Consensus 310 ~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 388 (783)
.. ...++. +....+.. +..+ .++.++++++ .+.+.+|..+. .+++|++|++++|.+.+++. .
T Consensus 238 ~~--------~~~l~~--~~~~~~~~----l~~l-~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~-~ 300 (570)
T 2z63_A 238 RN--------EGNLEK--FDKSALEG----LCNL-TIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVTIERVKD-F 300 (570)
T ss_dssp CC--------CSSCEE--CCTTTTGG----GGGS-EEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCEECSCCB-C
T ss_pred cC--------chhhhh--cchhhhcc----cccc-chhhhhhhcchhhhhhchhhhc-CcCcccEEEecCccchhhhh-h
Confidence 00 000110 11111111 1111 2455555555 44444554433 55666666666666554321 1
Q ss_pred ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCC
Q 047035 389 KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCAS 468 (783)
Q Consensus 389 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 468 (783)
+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++
T Consensus 301 ~~~~-~L~~L~l~~n~~~-~l~~---------------------------~~l~~L~~L~l~~n~~~~~~~~---~~~~~ 348 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFG-QFPT---------------------------LKLKSLKRLTFTSNKGGNAFSE---VDLPS 348 (570)
T ss_dssp CSCC-CCSEEEEESCBCS-SCCB---------------------------CBCSSCCEEEEESCBSCCBCCC---CBCTT
T ss_pred hccC-CccEEeeccCccc-ccCc---------------------------ccccccCEEeCcCCcccccccc---ccCCC
Confidence 2223 5555555555554 3333 2344455555555554433332 34555
Q ss_pred CcEEECcCccccccC--CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEE
Q 047035 469 LEYLDVSENNFYGHI--FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLL 545 (783)
Q Consensus 469 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ 545 (783)
|++|++++|++.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.++++|++|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 555555555554432 34455666666666666666654333 6677777777777777776555 4567777788888
Q ss_pred CCCCcccccCcccccCCCCCCEEeCCCcccc-ccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccc
Q 047035 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLF-GSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFF 623 (783)
Q Consensus 546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 623 (783)
+++|++.+..|..+..+++|++|++++|++. +.+|..+ .+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 8888877777777778888888888888876 5677666 7888888888888888777888888888888888888888
Q ss_pred cCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035 624 GRIPDQINNHSELRVLLLRGNYLQGQIPI 652 (783)
Q Consensus 624 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 652 (783)
+..|..+..+++|+.|++++|++++..|.
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 87777888888888888888888877663
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.7e-49 Score=454.76 Aligned_cols=477 Identities=18% Similarity=0.207 Sum_probs=246.1
Q ss_pred CCCCcCCCCCCCCccc---ceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCC
Q 047035 15 ILTSWVDDGISDCCDW---ERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNE 91 (783)
Q Consensus 15 ~~~~W~~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (783)
..++|+.+ +|||.| .||+|+. .|||+++++++.++ .+.++ ..++.+++|++|+|++|.+.....
T Consensus 56 ~~~~W~~~--~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l---------~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~ 122 (636)
T 4eco_A 56 PGANWNFN--KELDMWGAQPGVSLNS-NGRVTGLSLEGFGA---------SGRVP-DAIGQLTELEVLALGSHGEKVNER 122 (636)
T ss_dssp --CCCCCS--SCGGGTTCCTTEEECT-TCCEEEEECTTSCC---------EEEEC-GGGGGCTTCCEEESCCGGGGGTCC
T ss_pred cCCCCCCC--CCcccccCCCCeEEcC-CCCEEEEEecCccc---------CCcCC-hHHhcCccceEEECcCCccccCCc
Confidence 45689754 789999 9999986 48999999998875 12232 567888888888888875421100
Q ss_pred C--------CCCcccCCCCCCCEEeCCCCCCCCCCcccccC-CCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCC--C
Q 047035 92 N--------KDYDSSGSSKKLKILNLNYNNFNDSVLPYLNT-LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLS--W 160 (783)
Q Consensus 92 ~--------~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~--~ 160 (783)
. ...... +.+|+ ++++++.+.+.++..+.. +..+..+++....+.. .....++.+.+. .
T Consensus 123 ~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~ 192 (636)
T 4eco_A 123 LFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLS 192 (636)
T ss_dssp SBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCS
T ss_pred cccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------ccccchhhhhhcccc
Confidence 0 000000 22334 444444444444433331 1112222222111110 011112222222 2
Q ss_pred CCCCCCcCccccCCCCCCCEEECcCCcCcc------------------cCCCcC--CCCCCCEEEccCccCcccCCcccc
Q 047035 161 NGISSGATRLGLGNLTNLEVLDLSANRISG------------------SLTELA--PFRNLKVLGMRNNLLNGSVESKGI 220 (783)
Q Consensus 161 n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~------------------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l 220 (783)
|++++ .+ ..++++++|++|+|++|.+++ .+..++ ++++|++|++++|.+.+.+| ..+
T Consensus 193 n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l 269 (636)
T 4eco_A 193 NNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL 269 (636)
T ss_dssp CEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT
T ss_pred CCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH
Confidence 34444 22 145555555555555555555 222444 45555555555555444444 444
Q ss_pred cCCCCCcEEEccCcc-ccc-cCCccccCC------CCCCEEEcccccCCccCch--hhcCCCCCCEEeCcCCccceecCh
Q 047035 221 CELKNLTELDLGENN-LEG-QLPWCLSDL------IGLKVLDISFNHLSGNLPS--VIANLTSLEYLALSDNNFQGEFPL 290 (783)
Q Consensus 221 ~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~ 290 (783)
+++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.|.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 555555555555554 444 444444443 44555555555554 4444 44555555555555555444444
Q ss_pred hhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCC-CCEEEccCCcccCCCChhhhh-cC
Q 047035 291 SLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD-FKFLDLSSNKLVGNFPTWLMQ-NN 368 (783)
Q Consensus 291 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~-~l 368 (783)
.+..+++|++|++++|.++.+|..+..+++ |++|++++|.+. .+|..+.. .+
T Consensus 348 -------------------------~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 348 -------------------------AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp -------------------------CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred -------------------------hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 333344555556666666666666666666 666666666666 55543321 12
Q ss_pred CCCcEEEccCccccCcccCCcc-------CCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCC
Q 047035 369 TKLEVLRLSNNSFSGILQLPKV-------KHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEM 441 (783)
Q Consensus 369 ~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 441 (783)
++|++|++++|.+.+..+..+. .+++|++|++++|+++ .+|..++..+++|++|++++|.++
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~---------- 470 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT---------- 470 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS----------
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC----------
Confidence 2555555555555544322222 3445555555555555 445444444455555555555554
Q ss_pred CCCCeeeccCCcCccccChhhhhcC-------CCCcEEECcCccccccCCCccc--CCCCccEEEccCcccccccccccc
Q 047035 442 KELFLLDLSRNKFSGDLSATSVIRC-------ASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAGLL 512 (783)
Q Consensus 442 ~~L~~L~L~~n~l~~~i~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~ 512 (783)
.+|...+... ++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+.
T Consensus 471 ---------------~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 471 ---------------EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp ---------------BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred ---------------CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 3333332222 25666666666665 3455444 56666666666666665 566666
Q ss_pred cCCCCcEEEcc------CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccc
Q 047035 513 NSHGLVVLDIS------NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576 (783)
Q Consensus 513 ~~~~L~~L~Ls------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 576 (783)
.+++|++|+++ +|.+.+.+|..++++++|++|++++|++ +.+|..+. ++|++|++++|++.
T Consensus 534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 66666666664 4555556666666666666666666666 35555443 45666666666554
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-47 Score=443.33 Aligned_cols=474 Identities=18% Similarity=0.210 Sum_probs=243.4
Q ss_pred CcCCCC---CCCC--ccc------------ceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEe
Q 047035 18 SWVDDG---ISDC--CDW------------ERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILD 80 (783)
Q Consensus 18 ~W~~~~---~~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 80 (783)
+|+... ..+| |.| .||+|+. .++|++|+|+++++ .+.+ +..++.+++|++|+
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L---------~G~i-p~~l~~L~~L~~Ld 353 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA---------KGRV-PDAIGQLTELKVLS 353 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC---------EEEE-CGGGGGCTTCCEEE
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC---------CCcC-chHHhccccceEee
Confidence 896542 1345 999 9999986 68999999998875 1222 35678888888888
Q ss_pred C-CCCCCCCCCCCCCCcccCCCCCCCE-----EeC----------CCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCc
Q 047035 81 L-SGNYFDGWNENKDYDSSGSSKKLKI-----LNL----------NYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPS 144 (783)
Q Consensus 81 L-s~n~l~~~~~~~~~~~l~~l~~L~~-----L~L----------s~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 144 (783)
| ++|.+.|..+.. .......+.. +.. ....+.+..+..+...+. ..+.
T Consensus 354 Lss~N~lsG~~~~~---~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~-------------~~~i 417 (876)
T 4ecn_A 354 FGTHSETVSGRLFG---DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-------------MKPI 417 (876)
T ss_dssp SCCTTHHHHTTCBT---TBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT-------------SCCC
T ss_pred eccccccccccccc---ccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc-------------cccc
Confidence 8 777666543210 0000000000 000 000000000000000000 0000
Q ss_pred hhccCCCCCCeEeCCC--CCCCCCcCccccCCCCCCCEEECcCCcCcc------------------cCCCcC--CCCCCC
Q 047035 145 QGLANLRNLKALNLSW--NGISSGATRLGLGNLTNLEVLDLSANRISG------------------SLTELA--PFRNLK 202 (783)
Q Consensus 145 ~~l~~l~~L~~L~L~~--n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~------------------~~~~l~--~l~~L~ 202 (783)
.......++.+.+.. |.++++ + ..++++++|++|+|++|.+++ .++.++ ++++|+
T Consensus 418 -~~~~~l~l~~l~l~~~~N~L~~I-P-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 418 -KKDSRISLKDTQIGNLTNRITFI-S-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp -CCCCCCCCCTTTTTCCSCEEEEE-C-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred -ccccccchhhceeccccCcccch-h-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 011122233333332 445442 2 246666666666666666665 222433 555555
Q ss_pred EEEccCccCcccCCcccccCCCCCcEEEccCcc-ccc-cCCccccCCC-------CCCEEEcccccCCccCch--hhcCC
Q 047035 203 VLGMRNNLLNGSVESKGICELKNLTELDLGENN-LEG-QLPWCLSDLI-------GLKVLDISFNHLSGNLPS--VIANL 271 (783)
Q Consensus 203 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l 271 (783)
+|++++|.+.+.+| ..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++++
T Consensus 495 ~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 495 DVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp EEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred EEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 55555555544444 445555555555555554 444 4444333322 5555555555555 4444 45555
Q ss_pred CCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCC-CCEEE
Q 047035 272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYD-FKFLD 350 (783)
Q Consensus 272 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~-L~~L~ 350 (783)
++|++|++++|.+. .+| .+..+++|++|++++|.++.+|..+..+++ |+.|+
T Consensus 573 ~~L~~L~Ls~N~l~-~lp--------------------------~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 573 VKLGLLDCVHNKVR-HLE--------------------------AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp TTCCEEECTTSCCC-BCC--------------------------CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred CCCCEEECCCCCcc-cch--------------------------hhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence 55555555555544 444 334445566666677777777777777777 88888
Q ss_pred ccCCcccCCCChhhhhcC--CCCcEEEccCccccCcccC-C----ccCCCCccEEEcccCcCCCCCChhhhhhcCCceEE
Q 047035 351 LSSNKLVGNFPTWLMQNN--TKLEVLRLSNNSFSGILQL-P----KVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYI 423 (783)
Q Consensus 351 Ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~~~-~----~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L 423 (783)
+++|.+. .+|..+. .. ++|+.|++++|.+.+..+. + ...+++|+.|++++|+++ .+|..++..+++|++|
T Consensus 626 Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 626 FSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI 702 (876)
T ss_dssp CCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred CcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence 8887777 6665432 22 2367777777776654211 1 113346777777777776 5666665556677777
Q ss_pred eCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCccc--CCCCccEEEccCc
Q 047035 424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNN 501 (783)
Q Consensus 424 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n 501 (783)
++++|+++ .+|..+..... ....++++|++|++++|+++ .+|..+. .+++|+.|++++|
T Consensus 703 ~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp ECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS
T ss_pred ECCCCcCC-ccChHHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC
Confidence 77777666 44443222110 00012235555555555554 3444443 5555555555555
Q ss_pred ccccccccccccCCCCcEEEccC------CcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccc
Q 047035 502 HFTGKIKAGLLNSHGLVVLDISN------NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRL 575 (783)
Q Consensus 502 ~l~~~~~~~l~~~~~L~~L~Ls~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 575 (783)
.+++ +|..+..+++|+.|++++ |.+.+.+|..++++++|+.|++++|++ +.+|..+. ++|+.|+|++|++
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 5554 455555555666666655 444445555555555555555555555 34444433 3444555555444
Q ss_pred c
Q 047035 576 F 576 (783)
Q Consensus 576 ~ 576 (783)
.
T Consensus 840 ~ 840 (876)
T 4ecn_A 840 I 840 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-46 Score=424.44 Aligned_cols=484 Identities=19% Similarity=0.186 Sum_probs=334.2
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 232 (783)
...+.+++.++.++. .+ .++|++|++++|++++..+ .+..+++|++|++++|.+++..+ ..++.+++|++|+++
T Consensus 8 ~~c~~~~~~l~~ip~--~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 8 GVCDGRSRSFTSIPS--GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLS 82 (549)
T ss_dssp SEEECTTSCCSSCCS--CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECT
T ss_pred ceEECCCCccccccc--cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECC
Confidence 345677777776654 23 2678888888888877655 67777888888888887774433 667777778888887
Q ss_pred CccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccc
Q 047035 233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLR 311 (783)
Q Consensus 233 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~ 311 (783)
+|.+.+..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+|...+..+++|++|++++|.+..
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 777776666667777777777777777765 3456677777777777777775556665556666666666665555444
Q ss_pred cCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccC--C-
Q 047035 312 LKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQL--P- 388 (783)
Q Consensus 312 ~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~--~- 388 (783)
. +|..+..+++|++|+++.|.+. .+|.++...+++|++|++++|.+++.... +
T Consensus 163 ~-----------------------~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 163 Y-----------------------QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp E-----------------------CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred c-----------------------ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence 3 3444445555555555555543 34444444456666666666665553211 1
Q ss_pred ccCCCCccEEEcccCcCCCCCChhhh---hhcCCceEEeCCCCcccccC------CccccCCCCCCeeeccCCcCccccC
Q 047035 389 KVKHDLLRHLDISNNNLTGMLPQNMG---IVIQKLMYIDISKNNFEGNI------PYSIGEMKELFLLDLSRNKFSGDLS 459 (783)
Q Consensus 389 ~~~~~~L~~L~L~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~i~ 459 (783)
...+++|+.|++++|.+++..+..+. ..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+.....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 13455666666666666543333221 23456777777777665421 1234566777777777776542110
Q ss_pred ----hhhhhcCCCCcEEECcCccccccCCCcc-cCCCCccEEEccCcccccccc---cccccCCCCcEEEccCCcccccC
Q 047035 460 ----ATSVIRCASLEYLDVSENNFYGHIFPTY-MNLTQLRWLYLKNNHFTGKIK---AGLLNSHGLVVLDISNNLLSGHI 531 (783)
Q Consensus 460 ----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~Ls~n~l~~~~ 531 (783)
...+...++|++|++++|.+. .+|..+ ..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..
T Consensus 299 ~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp SCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred cccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 112234567888888888875 355544 467888888888888877653 33667788888888888887543
Q ss_pred C--CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcC
Q 047035 532 P--CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRS 609 (783)
Q Consensus 532 p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 609 (783)
+ ..++.+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+ .++|++|++++|++++.+ ..+
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~-~~~L~~L~Ls~N~l~~~~----~~l 450 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI-PQTLEVLDVSNNNLDSFS----LFL 450 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS-CTTCSEEECCSSCCSCCC----CCC
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh-cCCceEEECCCCChhhhc----ccC
Confidence 2 45778888888888888888 678788888888999999888863 34333 368999999999998643 478
Q ss_pred CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 610 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus 451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 89999999999997 6776 46789999999999999998888899999999999999999998883
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.8e-46 Score=421.62 Aligned_cols=491 Identities=21% Similarity=0.208 Sum_probs=369.3
Q ss_pred CCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCE
Q 047035 125 LTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKV 203 (783)
Q Consensus 125 l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~ 203 (783)
|+...+.+.+++.++.+ |. .+. ++|++|++++|.++...+. .++++++|++|++++|++++.++ .++.+++|++
T Consensus 4 C~~~~~c~~~~~~l~~i-p~-~~~--~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSI-PS-GLT--AAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp ECTTSEEECTTSCCSSC-CS-CCC--TTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCceEECCCCccccc-cc-cCC--CCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 34455578888888875 53 343 7999999999999987653 78999999999999999999886 8999999999
Q ss_pred EEccCccCcccCCcccccCCCCCcEEEccCccccc-cCCccccCCCCCCEEEcccccCCccCc-hhhcCCCCCCEEeCcC
Q 047035 204 LGMRNNLLNGSVESKGICELKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLSGNLP-SVIANLTSLEYLALSD 281 (783)
Q Consensus 204 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~ 281 (783)
|++++|.+++. ++..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++
T Consensus 79 L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 79 LDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 99999999854 44679999999999999999986 357789999999999999998544554 6899999999999999
Q ss_pred CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccC---h-hhhcCCCCCEEEccCCccc
Q 047035 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIP---S-FLLHQYDFKFLDLSSNKLV 357 (783)
Q Consensus 282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip---~-~l~~~~~L~~L~Ls~n~l~ 357 (783)
|.+.+..|. .++.+++|++|+++.+.........+..+++|++|++++|.++.++ . ....+++|+.|++++|.+.
T Consensus 158 n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQ-SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTT-TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChh-hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 999977774 5778888888888776654333222233556666666666555331 1 1123445556666555555
Q ss_pred CCCChhhh---hcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccc--
Q 047035 358 GNFPTWLM---QNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEG-- 432 (783)
Q Consensus 358 ~~~p~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-- 432 (783)
+..+..+. ..+++|+.+++++|.+.+....+.. .. .....+++|+.+++.++.+..
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------------~~-~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS------------------ES-DVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC------------------TT-TCCCCCTTCCEEEEESCBCSCGG
T ss_pred hhHHHHHHHHhhhhcccccccccccccccccccccc------------------ch-hhhhhhcccccccccccccchhh
Confidence 43333221 2344555555555555443221100 00 001134556666666655432
Q ss_pred ---cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCC---CcccCCCCccEEEccCcccccc
Q 047035 433 ---NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF---PTYMNLTQLRWLYLKNNHFTGK 506 (783)
Q Consensus 433 ---~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~ 506 (783)
.++..+....+|+.|++++|++. .+|...+..+++|++|++++|++.+.+| ..+..+++|++|++++|.+++.
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence 12222344567889999999886 7888777788999999999999887653 3467889999999999999865
Q ss_pred cc--cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035 507 IK--AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584 (783)
Q Consensus 507 ~~--~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 584 (783)
.+ ..+..+++|++|++++|+++ .+|..++.+++|++|++++|+++ .+|..+. ++|++|++++|++++.+ ..
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~---~~ 449 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS---LF 449 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC---CC
T ss_pred ccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhhc---cc
Confidence 33 45788999999999999998 68888999999999999999987 4554442 68999999999998753 26
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
+++|++|++++|+++ .+|. ...+++|++|+|++|++++..|.++..+++|+.|++++|++.+..|
T Consensus 450 l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 889999999999998 7776 4678999999999999999999999999999999999999988776
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-43 Score=412.39 Aligned_cols=506 Identities=22% Similarity=0.199 Sum_probs=245.4
Q ss_pred CCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCC
Q 047035 75 ELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLK 154 (783)
Q Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~ 154 (783)
++++|||++|.|++..+ .+|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+ ..|.++++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCC
Confidence 56777777777666555 556666777777777776666556666666777777777666665432 3566666666
Q ss_pred eEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035 155 ALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232 (783)
Q Consensus 155 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 232 (783)
+|++++|+++.+.+. .++++++|++|++++|.+++.. + .++.+++|++|++++|.++
T Consensus 128 ~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 186 (635)
T 4g8a_A 128 KLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-------------------- 186 (635)
T ss_dssp EEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--------------------
T ss_pred EEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc--------------------
Confidence 666666666655442 4566666666666666655421 2 3444555555555555554
Q ss_pred CccccccCCccccCCCC----CCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035 233 ENNLEGQLPWCLSDLIG----LKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308 (783)
Q Consensus 233 ~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~ 308 (783)
+..+..+..+.+ ...++++.|.+....+.. .....++.+++.+|.....++...+..+..++...+..+.
T Consensus 187 -----~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 260 (635)
T 4g8a_A 187 -----SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 260 (635)
T ss_dssp -----EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred -----ccccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence 333333332222 223444444444322222 2222334444444433333333334444444444332221
Q ss_pred cc------ccCCCCCCCCccccEEeCCCCCCC----ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccC
Q 047035 309 NL------RLKTENWIPTFQLKVLQLPNCNLK----VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSN 378 (783)
Q Consensus 309 ~~------~~~~~~~~~~~~L~~L~L~~~~l~----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 378 (783)
.. ......+.....+....+..+... .++..+....+++.+++.++.+
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---------------------- 318 (635)
T 4g8a_A 261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI---------------------- 318 (635)
T ss_dssp CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE----------------------
T ss_pred cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc----------------------
Confidence 10 011111112222222222211111 2222233333444444444443
Q ss_pred ccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCcc--
Q 047035 379 NSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSG-- 456 (783)
Q Consensus 379 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-- 456 (783)
.... .+.....++.|++.+|.+.+..+. .++.|+.+++..|...... ....+++|+.+++++|.+..
T Consensus 319 ---~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 319 ---ERVK--DFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp ---EECG--GGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEE
T ss_pred ---cccc--ccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCc--ccccccccccchhhcccccccc
Confidence 3331 122233444444444444321111 2334444444444433211 12344455555555554431
Q ss_pred ccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCCcccccCCCCc
Q 047035 457 DLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWI 535 (783)
Q Consensus 457 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l 535 (783)
..+. .+..+.+|+++++..|.... .+..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+..+..+
T Consensus 388 ~~~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 388 CCSQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp ECCH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 1122 12344555555555554443 22334455555555555554443322 234455555555555555555555555
Q ss_pred CCCCCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCc
Q 047035 536 GNFSYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELL 613 (783)
Q Consensus 536 ~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 613 (783)
..+++++.|++++|.+. +..|..|..+++|++|+|++|++++..|..+ ++++|++|+|++|++++..|..|.++++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 55555555555555432 2344555555555555555555555555555 555555666666555555555555556666
Q ss_pred EEECcCCccccCCchhccCC-cCCCEEeCcCCccc
Q 047035 614 TLDLRDNKFFGRIPDQINNH-SELRVLLLRGNYLQ 647 (783)
Q Consensus 614 ~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~N~l~ 647 (783)
+|||++|++++..|..+..+ ++|+.|+|++|++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 66666666655555555555 45666666665554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-46 Score=429.15 Aligned_cols=340 Identities=18% Similarity=0.190 Sum_probs=281.6
Q ss_pred CCCCCccChhhhcCCCCCEEEccCCcccCC-----------------CChhhh-hcCCCCcEEEccCccccCcccCCccC
Q 047035 330 NCNLKVIPSFLLHQYDFKFLDLSSNKLVGN-----------------FPTWLM-QNNTKLEVLRLSNNSFSGILQLPKVK 391 (783)
Q Consensus 330 ~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~ 391 (783)
.|+++.+|..++.+++|++|++++|.+++. +|..+. .++++|++|++++|.+.+..+..+..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 456667888899999999999999998875 776543 26888999999999888876666788
Q ss_pred CCCccEEEcccCc-CCC-CCChhhhhh-----cCCceEEeCCCCcccccCCc--cccCCCCCCeeeccCCcCccccChhh
Q 047035 392 HDLLRHLDISNNN-LTG-MLPQNMGIV-----IQKLMYIDISKNNFEGNIPY--SIGEMKELFLLDLSRNKFSGDLSATS 462 (783)
Q Consensus 392 ~~~L~~L~L~~n~-l~~-~~p~~~~~~-----l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~i~~~~ 462 (783)
+++|++|++++|+ +++ .+|..++.. +++|++|++++|+++ .+|. .+..+++|+.|++++|+++|.+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 8899999999998 887 788877531 388999999999998 7888 88899999999999999988888 5
Q ss_pred hhcCCCCcEEECcCccccccCCCcccCCCC-ccEEEccCcccccccccccccCC--CCcEEEccCCcccccCCCCcC---
Q 047035 463 VIRCASLEYLDVSENNFYGHIFPTYMNLTQ-LRWLYLKNNHFTGKIKAGLLNSH--GLVVLDISNNLLSGHIPCWIG--- 536 (783)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~Ls~n~l~~~~p~~l~--- 536 (783)
+..+++|++|++++|++. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+.+.+|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 678889999999999888 67778888888 999999999988 6777776654 899999999999988888888
Q ss_pred ----CCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-C-c-------CCCcEEEccCCcccccCc
Q 047035 537 ----NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-N-L-------SSIMHLYLQNNALSGQIP 603 (783)
Q Consensus 537 ----~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~-l-------~~L~~L~L~~n~l~~~~p 603 (783)
.+++|++|++++|++++..+..+..+++|++|++++|+++ .+|... . . ++|++|+|++|+++ .+|
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 7788999999999998443344566889999999999988 555543 2 2 28999999999998 788
Q ss_pred hhhh--cCCCCcEEECcCCccccCCchhccCCcCCCEEeC------cCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 604 STLF--RSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL------RGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 604 ~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
..+. .+++|+.|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..++.+++|+.|++++|++ +.||
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 8887 88999999999999987 8888888999999998 56778888898899999999999999998 7787
Q ss_pred cch
Q 047035 676 SCF 678 (783)
Q Consensus 676 ~~~ 678 (783)
..+
T Consensus 583 ~~~ 585 (636)
T 4eco_A 583 EKI 585 (636)
T ss_dssp SCC
T ss_pred HhH
Confidence 754
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-44 Score=408.94 Aligned_cols=456 Identities=22% Similarity=0.262 Sum_probs=324.1
Q ss_pred CeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEcc
Q 047035 154 KALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLG 232 (783)
Q Consensus 154 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 232 (783)
++|++++|+++.++. .+. ++|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..++.+++|++|+++
T Consensus 3 ~~l~ls~n~l~~ip~--~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPK--DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCSSCCC--SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECC
T ss_pred ceEecCCCCcccccc--ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecC
Confidence 578899998887654 333 789999999998887776 78888888888888888875444 678888888888888
Q ss_pred CccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCC--cEEEeccCcc
Q 047035 233 ENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL--EVLLLKVSSN 309 (783)
Q Consensus 233 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L--~~L~l~~~~~ 309 (783)
+|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccc
Confidence 88888 45554 78888888888888876 467888888888888888888764 234555555 6666555543
Q ss_pred cccCCCCCCCCccccEEeCCCCCCC-ccChhhhcCC-CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcc-------
Q 047035 310 LRLKTENWIPTFQLKVLQLPNCNLK-VIPSFLLHQY-DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS------- 380 (783)
Q Consensus 310 ~~~~~~~~~~~~~L~~L~L~~~~l~-~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~------- 380 (783)
.. . ..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 151 ~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 151 YG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp TT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred cc----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 00 2 3333333322 233456667776666666555567777777777775
Q ss_pred ccCcccCCccCCCCccEEEcccCcCCCCCChhhhh--hcCCceEEeCCCCcccccCCccc-----cCCCCCCeeeccCCc
Q 047035 381 FSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGI--VIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNK 453 (783)
Q Consensus 381 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~ 453 (783)
+.+..+ .+..+++|+.|++++|.+.+..+..+.. ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.
T Consensus 209 ~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~ 287 (520)
T 2z7x_B 209 FLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287 (520)
T ss_dssp HHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC
T ss_pred eecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc
Confidence 433322 3456677777777777665433222211 13477788888887777777776 666777777777766
Q ss_pred CccccChhhhhcC---CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccccc
Q 047035 454 FSGDLSATSVIRC---ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH 530 (783)
Q Consensus 454 l~~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 530 (783)
+ .+|...+..+ .+|+.|++++|.+.. .. .+..+++|++|++++|.+++.
T Consensus 288 ~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~------------------------~~--~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 288 F--GFPQSYIYEIFSNMNIKNFTVSGTRMVH------------------------ML--CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp C--CSCTHHHHHHHHTCCCSEEEEESSCCCC------------------------CC--CCSSCCCCCEEECCSSCCCTT
T ss_pred e--ecchhhhhcccccCceeEEEcCCCcccc------------------------cc--chhhCCcccEEEeECCccChh
Confidence 6 4453222222 345555555554432 11 013456777777777777777
Q ss_pred CCCCcCCCCCCcEEECCCCcccc--cCcccccCCCCCCEEeCCCcccccccccc-c-CcCCCcEEEccCCcccccCchhh
Q 047035 531 IPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLQLLDLSENRLFGSIASS-L-NLSSIMHLYLQNNALSGQIPSTL 606 (783)
Q Consensus 531 ~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~-~l~~L~~L~L~~n~l~~~~p~~l 606 (783)
+|.+++++++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.+|..+
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 77777777778888888887775 55677888888888888888888756654 4 77888888888888887777766
Q ss_pred hcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035 607 FRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
. ++|+.|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..|.
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 4 78999999999997 78888889999999999999999 56665 89999999999999999987763
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.9e-43 Score=405.35 Aligned_cols=514 Identities=23% Similarity=0.222 Sum_probs=312.0
Q ss_pred CcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCc
Q 047035 40 GQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVL 119 (783)
Q Consensus 40 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~ 119 (783)
..++.++|+++.+ ..+.+..|..+++|++|||++|.+++..+ .+|.++++|++|+|++|++++..+
T Consensus 52 ~~~~~LdLs~N~i----------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNPL----------RHLGSYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTTSCC----------CEECTTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeCCCC----------CCCCHHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCCH
Confidence 3688999999876 34666789999999999999999998777 789999999999999999998788
Q ss_pred ccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCC
Q 047035 120 PYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPF 198 (783)
Q Consensus 120 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l 198 (783)
..|+++++|++|+|++|++++..+ ..|+++++|++|++++|.+.....+..++.+++|++|++++|++++..+ .+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 889999999999999999998755 4799999999999999999886655578899999999999999998766 55544
Q ss_pred CC----CCEEEccCccCcccCCcccccCCCCCcEEEccCccccc-cCCccccCCCCCCEEEcccccCC------ccCchh
Q 047035 199 RN----LKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEG-QLPWCLSDLIGLKVLDISFNHLS------GNLPSV 267 (783)
Q Consensus 199 ~~----L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~------~~~p~~ 267 (783)
.+ ...++++.|.+.. ++ ........++.+++.+|.... ..+..+..+..++...+..+... ...+..
T Consensus 197 ~~l~~~~~~~~ls~n~l~~-i~-~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNF-IQ-PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HTCTTCCCEEECTTCCCCE-EC-TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhhhhhhhhhhcccCcccc-cC-cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 33 3467777777753 33 223334456667776665432 22334555666665555433221 111122
Q ss_pred hcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCC
Q 047035 268 IANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFK 347 (783)
Q Consensus 268 l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~ 347 (783)
+..+..+....+..+.... ........+....+++.+.+.++.+..++. +.....++
T Consensus 275 ~~~~~~l~~~~l~~~~~~~----------------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~ 331 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDY----------------------YLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQ 331 (635)
T ss_dssp TGGGGGSEEEEEEEECCCS----------------------CEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCS
T ss_pred cccccchhhhhhhhhhhcc----------------------cccchhhhhhhhcccccccccccccccccc-cccchhhh
Confidence 2222233322222211110 001111223344456666666665554433 34556777
Q ss_pred EEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCC--CCChhhhhhcCCceEEeC
Q 047035 348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTG--MLPQNMGIVIQKLMYIDI 425 (783)
Q Consensus 348 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~l~~L~~L~L 425 (783)
.|++.+|.+.+..+. .+..|+.+++..|..... .....+++|+.++++.|.+.. ..+.... ...+|+++++
T Consensus 332 ~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~ 404 (635)
T 4g8a_A 332 HLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDL 404 (635)
T ss_dssp EEEEESCEESSCCCC----BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEEC
T ss_pred hhhcccccccCcCcc----cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchh-hhhhhhhhhc
Confidence 777777776633322 456677777777765544 333456667777777666542 2233332 4556666666
Q ss_pred CCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc-
Q 047035 426 SKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT- 504 (783)
Q Consensus 426 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 504 (783)
..+.... .+..+..+++|+.+++..+......+...+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 6665543 33445556666666666555554444444455555555555555555555555555555555555555432
Q ss_pred cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccC
Q 047035 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLN 584 (783)
Q Consensus 505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 584 (783)
+..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~-------------------- 543 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-------------------- 543 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT--------------------
T ss_pred ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC--------------------
Confidence 233444444555555555555555444555555555555555555554444444444444
Q ss_pred cCCCcEEEccCCcccccCchhhhcC-CCCcEEECcCCcccc
Q 047035 585 LSSIMHLYLQNNALSGQIPSTLFRS-TELLTLDLRDNKFFG 624 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ 624 (783)
|++|+|++|++++..|..+..+ ++|++|+|++|++..
T Consensus 544 ---L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 544 ---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ---CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred ---CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 4555555555554455555544 455555555555543
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=397.55 Aligned_cols=437 Identities=19% Similarity=0.172 Sum_probs=348.1
Q ss_pred CEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035 202 KVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281 (783)
Q Consensus 202 ~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 281 (783)
+++++++|.++ .+| ..+. ++|++|++++|.+.+..|..|..+++|++|++++|++++..|.+|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 46777888776 566 3333 7778888888877766666777777888888888877776677777778888888887
Q ss_pred CccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCc--cChhhhcCCCCCEEEccCCcccCC
Q 047035 282 NNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKV--IPSFLLHQYDFKFLDLSSNKLVGN 359 (783)
Q Consensus 282 n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~--ip~~l~~~~~L~~L~Ls~n~l~~~ 359 (783)
|.+. .+|.. .+ ++|++|++++|.++. +|..+..+++|++|++++|.+.+.
T Consensus 79 N~l~-~lp~~---~l------------------------~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 130 (520)
T 2z7x_B 79 NKLV-KISCH---PT------------------------VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130 (520)
T ss_dssp SCCC-EEECC---CC------------------------CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG
T ss_pred Ccee-ecCcc---cc------------------------CCccEEeccCCccccccchhhhccCCcceEEEecCcccchh
Confidence 7776 45532 33 456666677777764 567888888999999999888752
Q ss_pred CChhhhhcCCCC--cEEEccCccc--cCcccCCccCCC-CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCc-----
Q 047035 360 FPTWLMQNNTKL--EVLRLSNNSF--SGILQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN----- 429 (783)
Q Consensus 360 ~p~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~----- 429 (783)
. +..+++| ++|++++|.+ .+..+..+..+. ....+++++|.+.+.++...+..+++|+.+++++|.
T Consensus 131 ---~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 206 (520)
T 2z7x_B 131 ---S-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206 (520)
T ss_dssp ---G-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT
T ss_pred ---h-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc
Confidence 1 2366777 9999999988 444333333322 234678899998888888777789999999999997
Q ss_pred --ccccCCccccCCCCCCeeeccCCcCccccChhhhh--cCCCCcEEECcCccccccCCCcc-----cCCCCccEEEccC
Q 047035 430 --FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVI--RCASLEYLDVSENNFYGHIFPTY-----MNLTQLRWLYLKN 500 (783)
Q Consensus 430 --l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~ 500 (783)
+.+.+| .+..+++|+.|++++|.+++..+..... .+++|++|++++|++.+.+|..+ ..+++|+.+++++
T Consensus 207 ~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~ 285 (520)
T 2z7x_B 207 SYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS 285 (520)
T ss_dssp HHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE
T ss_pred ceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc
Confidence 666666 7889999999999999887543332221 24699999999999998899888 8999999999999
Q ss_pred cccccccc-cccccC---CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccc
Q 047035 501 NHFTGKIK-AGLLNS---HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLF 576 (783)
Q Consensus 501 n~l~~~~~-~~l~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 576 (783)
|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++.+|..+..+++|++|++++|++.
T Consensus 286 n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 361 (520)
T 2z7x_B 286 DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361 (520)
T ss_dssp CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC
T ss_pred cce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC
Confidence 998 455 444444 68999999999987432 1368899999999999999999999999999999999999998
Q ss_pred c--cccccc-CcCCCcEEEccCCcccccCchh-hhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035 577 G--SIASSL-NLSSIMHLYLQNNALSGQIPST-LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI 652 (783)
Q Consensus 577 ~--~~p~~~-~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 652 (783)
+ .+|..+ .+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|.
T Consensus 362 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~ 438 (520)
T 2z7x_B 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK 438 (520)
T ss_dssp BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred ccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence 7 566667 8999999999999999867765 78889999999999999998888775 79999999999999 8899
Q ss_pred chhCCCCCCEEecCCCcCcccCCcc-hhhccc
Q 047035 653 ALCQLQKLGILDLSHNKLNGSIPSC-FVNMLF 683 (783)
Q Consensus 653 ~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~ 683 (783)
.+..+++|+.|++++|+++ .+|.. +.+++.
T Consensus 439 ~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp GGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred hhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 8899999999999999999 67776 666553
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-43 Score=412.67 Aligned_cols=465 Identities=18% Similarity=0.200 Sum_probs=226.6
Q ss_pred CCCCEEEccCCcCCCCCCchhccCCCCCCeEeC-CCCCCCCCcCccccCCCCCCCE-----EEC----------cCCcCc
Q 047035 126 TSLTTLNLYYNRIGGLNPSQGLANLRNLKALNL-SWNGISSGATRLGLGNLTNLEV-----LDL----------SANRIS 189 (783)
Q Consensus 126 ~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L-~~n~l~~~~~~~~l~~l~~L~~-----L~L----------s~n~~~ 189 (783)
.+++.|+|+++.+.|.+|. .++++++|++|+| ++|.+.+..+.........+.. +.. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5688888888888888775 7888888888888 7776544322100000000000 000 000000
Q ss_pred c-----------cCC-CcCCCCCCCEEEccC--ccCcccCCcccccCCCCCcEEEccCccccc-----------------
Q 047035 190 G-----------SLT-ELAPFRNLKVLGMRN--NLLNGSVESKGICELKNLTELDLGENNLEG----------------- 238 (783)
Q Consensus 190 ~-----------~~~-~l~~l~~L~~L~L~~--n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~----------------- 238 (783)
+ ..+ .......++.+.+.. |.+++ +| ..++++++|++|+|++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0 000 111122233333332 55555 55 456667777777777777666
Q ss_pred cCCcccc--CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCc-cce-ecChhhhcCCCCCcEEEeccCcccccCC
Q 047035 239 QLPWCLS--DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNN-FQG-EFPLSLLTNHSNLEVLLLKVSSNLRLKT 314 (783)
Q Consensus 239 ~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 314 (783)
.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|.. ++.++
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~----------------- 541 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA----------------- 541 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH-----------------
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhh-----------------
Confidence 3666666 77777777777777777777777777777777777776 665 55543 22111
Q ss_pred CCCCCCccccEEeCCCCCCCccCh--hhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCC
Q 047035 315 ENWIPTFQLKVLQLPNCNLKVIPS--FLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKH 392 (783)
Q Consensus 315 ~~~~~~~~L~~L~L~~~~l~~ip~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 392 (783)
..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+. .+| .+..+
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--------------------------~~~~L 594 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--------------------------AFGTN 594 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--------------------------CCCTT
T ss_pred hcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--------------------------hhcCC
Confidence 011122334444444444444444 4444444444444444444 333 23334
Q ss_pred CCccEEEcccCcCCCCCChhhhhhcCC-ceEEeCCCCcccccCCccccCCCC--CCeeeccCCcCccccChhhhhcCCCC
Q 047035 393 DLLRHLDISNNNLTGMLPQNMGIVIQK-LMYIDISKNNFEGNIPYSIGEMKE--LFLLDLSRNKFSGDLSATSVIRCASL 469 (783)
Q Consensus 393 ~~L~~L~L~~n~l~~~~p~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~i~~~~~~~l~~L 469 (783)
++|+.|++++|++. .+|..++ .+++ |++|++++|.++ .+|..+..++. |+.|++++|++.+.+|...
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~------- 664 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS------- 664 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS-------
T ss_pred CcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccch-------
Confidence 44444444444444 4444432 3444 555555555544 44444433322 4444444444443322100
Q ss_pred cEEECcCccccccCCCccc--CCCCccEEEccCcccccccccc-cccCCCCcEEEccCCcccccCCCCcC--------CC
Q 047035 470 EYLDVSENNFYGHIFPTYM--NLTQLRWLYLKNNHFTGKIKAG-LLNSHGLVVLDISNNLLSGHIPCWIG--------NF 538 (783)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~Ls~n~l~~~~p~~l~--------~l 538 (783)
..+. .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.+. .+|..+. ++
T Consensus 665 ---------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 665 ---------------CSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp ---------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred ---------------hhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 0000 1223444444444444 22222 223444444444444444 2232221 12
Q ss_pred CCCcEEECCCCcccccCccccc--CCCCCCEEeCCCccccccccccc-CcCCCcEEEccC------CcccccCchhhhcC
Q 047035 539 SYLDVLLMSKNHLEGNIPVQIN--NFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN------NALSGQIPSTLFRS 609 (783)
Q Consensus 539 ~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~------n~l~~~~p~~l~~l 609 (783)
++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+ .+++|+.|+|++ |++.+.+|..+.++
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 25555555555555 4454444 55555555555555554 34333 455555555544 55555566666666
Q ss_pred CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035 610 TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670 (783)
Q Consensus 610 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 670 (783)
++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..++....+..+.+.+|++
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 6666666666665 55555543 4566666666655544444444444444444544443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-41 Score=386.26 Aligned_cols=463 Identities=20% Similarity=0.253 Sum_probs=300.0
Q ss_pred CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCc
Q 047035 149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT 227 (783)
Q Consensus 149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 227 (783)
.+...+++++++++++.++. .+ .++|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~--~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 103 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPK--DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLE 103 (562)
T ss_dssp ----CCEEECTTSCCCSCCT--TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCC
T ss_pred ccCCCcEEEcCCCCCccCCC--CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCC
Confidence 34445788888888877554 23 2678888888888877665 77778888888888887774434 6677778888
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccccCCc-cCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCC--cEEEe
Q 047035 228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSG-NLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNL--EVLLL 304 (783)
Q Consensus 228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L--~~L~l 304 (783)
+|++++|+++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+.+ .. +..+++| ++|++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L 176 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILL 176 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEe
Confidence 8888888777 45544 67778888888887775 345677777788888887777653 22 3333333 55555
Q ss_pred ccCcc--cccCCCCCCCCccccEEeCCCCCCCccChhhhcCC-CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccc
Q 047035 305 KVSSN--LRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQY-DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSF 381 (783)
Q Consensus 305 ~~~~~--~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 381 (783)
+.|.+ .. ..|..+..+. ..-.+++++|.+.+.++......+++|+.+++++|..
T Consensus 177 ~~n~l~~~~-----------------------~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 177 DLVSYHIKG-----------------------GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp EESSCCCCS-----------------------SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred ecccccccc-----------------------cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 55443 21 2233333222 1113466666666656555555566777777776631
Q ss_pred -----cCcccCCccCCCCccEEEcccCcCCCCCChhhh--hhcCCceEEeCCCCcccccCCccc-----cCCCCCCeeec
Q 047035 382 -----SGILQLPKVKHDLLRHLDISNNNLTGMLPQNMG--IVIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDL 449 (783)
Q Consensus 382 -----~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L 449 (783)
.+.. ..+..++.|+.+++.++.+.+.....+. ...++|++|++++|.++|.+|..+ ..++.|+.+++
T Consensus 234 ~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 234 NCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp THHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred ccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 1110 1124456666666666655432111110 013467777777777777777665 45555555555
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSG 529 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~ 529 (783)
..+.+ .+|...+..+ ....+|++|++++|.+.... ....+++|++|++++|.+++
T Consensus 313 ~~~~~--~~p~~~~~~~---------------------~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 313 KNQVF--LFSKEALYSV---------------------FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp EECCC--SSCHHHHHHH---------------------HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred cccee--ecChhhhhhh---------------------hccCcceEEEccCCCccccc--CccCCCCceEEECCCCcccc
Confidence 55554 3443222111 00133455555555443211 11456677777777777777
Q ss_pred cCCCCcCCCCCCcEEECCCCcccc--cCcccccCCCCCCEEeCCCcccccccccc-c-CcCCCcEEEccCCcccccCchh
Q 047035 530 HIPCWIGNFSYLDVLLMSKNHLEG--NIPVQINNFRQLQLLDLSENRLFGSIASS-L-NLSSIMHLYLQNNALSGQIPST 605 (783)
Q Consensus 530 ~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~-~l~~L~~L~L~~n~l~~~~p~~ 605 (783)
.+|..++++++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|.. + .+++|++|++++|++++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 777777777777777777777775 33566777888888888888887755554 3 7788888888888888777765
Q ss_pred hhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035 606 LFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 606 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
+. ++|+.|++++|+++ .+|.++..+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++|.+|.
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 54 68999999999987 68888889999999999999999 56665 89999999999999999998775
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-40 Score=379.81 Aligned_cols=442 Identities=21% Similarity=0.195 Sum_probs=331.2
Q ss_pred CCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEE
Q 047035 198 FRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYL 277 (783)
Q Consensus 198 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 277 (783)
+...++++++++.++ .+|. .+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|.+|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 334467777777776 3552 222 677777777777776666677777777777777777776667777777777777
Q ss_pred eCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCcc--ChhhhcCCCCCEEEccCCc
Q 047035 278 ALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVI--PSFLLHQYDFKFLDLSSNK 355 (783)
Q Consensus 278 ~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~i--p~~l~~~~~L~~L~Ls~n~ 355 (783)
++++|.+. .+|.. .+ ++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 106 ~Ls~N~l~-~lp~~---~l------------------------~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PM------------------------ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp ECTTSCCC-EECSC---CC------------------------TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ECCCCcCC-ccCcc---cc------------------------ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 77777766 55532 33 4566666777777754 4678888889999999888
Q ss_pred ccCCCChhhhhcCCCC--cEEEccCccc--cCcccCCccCCC-CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCc-
Q 047035 356 LVGNFPTWLMQNNTKL--EVLRLSNNSF--SGILQLPKVKHD-LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNN- 429 (783)
Q Consensus 356 l~~~~p~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~- 429 (783)
+.+... ..+++| ++|++++|.+ ++..+..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|.
T Consensus 158 l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 158 FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred cccCch----hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 875322 244555 9999999988 555333333222 122568889998888887776678899999999985
Q ss_pred ----ccccCCccccCCCCCCeeeccCCcCccccChhh--hhcCCCCcEEECcCccccccCCCcc-----cCCCCccEEEc
Q 047035 430 ----FEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS--VIRCASLEYLDVSENNFYGHIFPTY-----MNLTQLRWLYL 498 (783)
Q Consensus 430 ----l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L 498 (783)
+.+ ....+..+++|+.+++.++.+.+...... ....++|++|++++|.+.+.+|..+ ..++.|+.+++
T Consensus 234 ~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 234 NCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp THHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred ccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 222 22356788899999998887764221111 1134599999999999998888877 67777777888
Q ss_pred cCcccccccc-cccc---cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035 499 KNNHFTGKIK-AGLL---NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574 (783)
Q Consensus 499 ~~n~l~~~~~-~~l~---~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 574 (783)
..+.+ .+| ..+. ...+|++|++++|.+.... ..+.+++|++|++++|++++.+|..+.++++|++|++++|+
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 77776 344 2222 2367999999999986332 12688999999999999999999999999999999999999
Q ss_pred ccc--cccccc-CcCCCcEEEccCCcccccCch-hhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035 575 LFG--SIASSL-NLSSIMHLYLQNNALSGQIPS-TLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650 (783)
Q Consensus 575 l~~--~~p~~~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 650 (783)
+.+ .+|..+ .+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~i 465 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SI 465 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CC
T ss_pred cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-cc
Confidence 987 445666 899999999999999986665 478899999999999999988887665 79999999999999 78
Q ss_pred CcchhCCCCCCEEecCCCcCcccCCcc-hhhcccc
Q 047035 651 PIALCQLQKLGILDLSHNKLNGSIPSC-FVNMLFW 684 (783)
Q Consensus 651 p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~ 684 (783)
|..+..+++|+.|++++|+++ .||.. +..++.+
T Consensus 466 p~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 466 PKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred ChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 888889999999999999999 67776 7666543
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.4e-39 Score=358.41 Aligned_cols=409 Identities=22% Similarity=0.246 Sum_probs=184.8
Q ss_pred CCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCE
Q 047035 197 PFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEY 276 (783)
Q Consensus 197 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 276 (783)
+.++|++|++++|.+ +.+| ..++++++|++|++++|.+.+.+|..++.+++|+.+++.+|.. .++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHE 75 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSE
T ss_pred ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCE
Confidence 346677777777777 5666 5577777777777777777777777777666653333333321 23455
Q ss_pred EeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcc
Q 047035 277 LALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKL 356 (783)
Q Consensus 277 L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l 356 (783)
|++++|.++ .+|. ..++|++|++++|.+..++. ...+|++|++++|.++.+|.. .++|++|++++|++
T Consensus 76 L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLS-SLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC
T ss_pred EEecCCccc-cCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC
Confidence 555555554 2332 12344444444444332211 124556666666666655432 14666666666666
Q ss_pred cCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCc
Q 047035 357 VGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPY 436 (783)
Q Consensus 357 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 436 (783)
.+ +|. +..+++|++|++++|.+++++.. ..+|++|++++|++++ +| .+ ..+++|++|++++|.+++ +|.
T Consensus 144 ~~-lp~--~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~-l~-~~-~~l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 144 EK-LPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE-LP-EL-QNLPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp SS-CCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS-CC-CC-TTCTTCCEEECCSSCCSS-CCC
T ss_pred CC-Ccc--cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCc-Cc-cc-cCCCCCCEEECCCCcCCc-CCC
Confidence 63 552 33566666666666666654221 2356666666666653 44 22 245666666666666653 333
Q ss_pred cccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCC
Q 047035 437 SIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHG 516 (783)
Q Consensus 437 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~ 516 (783)
.. ++|++|++++|.+. .+|. +..+++|++|++++|++.+ +|. .+++|++|++++|.+++ +|.. +++
T Consensus 213 ~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~ 278 (454)
T 1jl5_A 213 LP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQS 278 (454)
T ss_dssp CC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred Cc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCc
Confidence 21 35666666666665 4553 4456666666666666654 222 13556666666666654 3332 255
Q ss_pred CcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCC-CCCCEEeCCCcccccccccccCcCCCcEEEccC
Q 047035 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNF-RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQN 595 (783)
Q Consensus 517 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~ 595 (783)
|++|++++|.+++. |.. .++|+.|++++|++++ ++ .+ ++|++|++++|++.+ +|.. +++|++|++++
T Consensus 279 L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~--~~~L~~L~L~~ 346 (454)
T 1jl5_A 279 LTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL--PPRLERLIASF 346 (454)
T ss_dssp CCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCS
T ss_pred CCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc--CCcCCEEECCC
Confidence 66666666665541 111 1456666666666553 11 12 356666666666654 3332 35566666666
Q ss_pred CcccccCchhhhcCCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc-
Q 047035 596 NALSGQIPSTLFRSTELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG- 672 (783)
Q Consensus 596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g- 672 (783)
|+++ .+|. .+++|++|++++|++++ .+|.++.. ++.|.+.+.+|.. +++|+.||+++|+++|
T Consensus 347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREF 411 (454)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------
T ss_pred Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcc
Confidence 6665 3444 34556666666666655 45544432 2234455555542 3889999999999998
Q ss_pred -cCCcchhhcc
Q 047035 673 -SIPSCFVNML 682 (783)
Q Consensus 673 -~iP~~~~~~~ 682 (783)
.||+++.++.
T Consensus 412 ~~iP~sl~~L~ 422 (454)
T 1jl5_A 412 PDIPESVEDLR 422 (454)
T ss_dssp -----------
T ss_pred ccchhhHhhee
Confidence 9999888775
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-38 Score=351.36 Aligned_cols=389 Identities=18% Similarity=0.189 Sum_probs=229.8
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035 228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307 (783)
Q Consensus 228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~ 307 (783)
.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~------ 83 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII------ 83 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE------
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCE------
Confidence 4555555554 3443 2 2566667777766666666666667777777777766655555444444443333
Q ss_pred cccccCCCCCCCCccccEEeCCCCCCCcc-ChhhhcCCCCCEEEccCCcccCCCChh-hhhcCCCCcEEEccCccccCcc
Q 047035 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVI-PSFLLHQYDFKFLDLSSNKLVGNFPTW-LMQNNTKLEVLRLSNNSFSGIL 385 (783)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~i-p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~l~~L~~L~L~~n~l~~~~ 385 (783)
|++++|.++.+ |..+..+++|++|++++|.+.+.+|.. .+..+++|++|++++|.+.+..
T Consensus 84 ------------------L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (455)
T 3v47_A 84 ------------------LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145 (455)
T ss_dssp ------------------EECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC
T ss_pred ------------------EeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC
Confidence 33444444422 445566667777777777776543332 1224555555555555555443
Q ss_pred cCC-ccCCCCccEEEcccCcCCCCCChhhhhhc--CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhh
Q 047035 386 QLP-KVKHDLLRHLDISNNNLTGMLPQNMGIVI--QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATS 462 (783)
Q Consensus 386 ~~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 462 (783)
+.. +..+++|++|++++|++++..|..+. .+ .+|+.|++++|.+.+..+..+.. .. ...
T Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~-~~~ 207 (455)
T 3v47_A 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGW----------------EK-CGN 207 (455)
T ss_dssp CCGGGGGCTTCCEEECTTCCBSCCCTTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTH----------------HH-HCC
T ss_pred cccccCCCCcccEEeCCCCcccccChhhhh-ccccccccccccccCcccccchhhccc----------------cc-ccc
Confidence 222 34445555555555555444443332 11 34444444444444322211110 00 000
Q ss_pred hhcCCCCcEEECcCccccccCCCcccC---CCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC--
Q 047035 463 VIRCASLEYLDVSENNFYGHIFPTYMN---LTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN-- 537 (783)
Q Consensus 463 ~~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-- 537 (783)
+..+++|++|++++|++.+..+..+.. .++|+.|++++|...+... ..+.+.+..+..+..
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 273 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLE 273 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGT
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccccccccc
Confidence 012233444444444333333222221 1344444444443322110 011111112222222
Q ss_pred CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD 616 (783)
Q Consensus 538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 616 (783)
.++|+.|++++|++++.+|..+..+++|++|++++|++.+..|..+ .+++|++|++++|.+++..|..+.++++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 2567777777777777777777777777888888887777777666 778888888888888877788889999999999
Q ss_pred CcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 617 LRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 617 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|++|++.+..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999988899999999999999999999977677789999999999999999999984
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-38 Score=348.20 Aligned_cols=362 Identities=22% Similarity=0.233 Sum_probs=248.2
Q ss_pred ccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCC
Q 047035 218 KGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHS 297 (783)
Q Consensus 218 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~ 297 (783)
..++++++|++|++++|.+.+. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+.+ ++ ++.++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCC
Confidence 3466677777777777777753 4 567777777777777777653 3 6677777777777777663 33 44455
Q ss_pred CCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEcc
Q 047035 298 NLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLS 377 (783)
Q Consensus 298 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 377 (783)
+|++|++ ++|.++.+| +..+++|++|++++|++.+ ++ ...+++|++|+++
T Consensus 107 ~L~~L~L------------------------~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 107 KLTYLNC------------------------DTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCH 156 (457)
T ss_dssp TCCEEEC------------------------CSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECT
T ss_pred cCCEEEC------------------------CCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECC
Confidence 5555444 444444443 4455556666666665554 22 2255666666666
Q ss_pred CccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 047035 378 NNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD 457 (783)
Q Consensus 378 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (783)
+|...+. .++..+++|++|++++|++++ +| + ..+++|++|++++|++++. .+..+++|+.|++++|++++
T Consensus 157 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 157 LNKKITK--LDVTPQTQLTTLDCSFNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TCSCCCC--CCCTTCTTCCEEECCSSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCcccc--cccccCCcCCEEECCCCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 6643332 244556667777777776664 44 2 3466777777777777653 36677777777777777774
Q ss_pred cChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCC
Q 047035 458 LSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGN 537 (783)
Q Consensus 458 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~ 537 (783)
+| +..+++|++|++++|++++.. ...+++|+.|++++| +|+.|++++|.+.+.+| ++.
T Consensus 227 ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 227 ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence 55 456777777777777777642 345667777776654 45667777787777766 467
Q ss_pred CCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035 538 FSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDL 617 (783)
Q Consensus 538 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 617 (783)
+++|+.|++++|...+.+|. ...+|+.|++++| ++|++|++++|++++ ++ +.++++|+.|++
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l 346 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTE-LD--VSHNTKLKSLSC 346 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSC-CC--CTTCTTCSEEEC
T ss_pred cccCCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCcccc-cc--cccCCcCcEEEC
Confidence 78888888888887777774 3456777777665 579999999999997 44 889999999999
Q ss_pred cCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035 618 RDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681 (783)
Q Consensus 618 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 681 (783)
++|++++ ++.|+.|++++|.+.|. +++..|+.+++++|+++|.||+.+...
T Consensus 347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~ 397 (457)
T 3bz5_A 347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQ 397 (457)
T ss_dssp CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCT
T ss_pred CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcc
Confidence 9999986 35677788999999986 356678889999999999999976543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.6e-38 Score=347.12 Aligned_cols=427 Identities=22% Similarity=0.218 Sum_probs=252.0
Q ss_pred CCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEE
Q 047035 174 NLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVL 253 (783)
Q Consensus 174 ~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 253 (783)
+.++|++|++++|.+...+++++++++|++|++++|.+.|.+| ..++++++|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc-----------cCCCEE
Confidence 4689999999999995444499999999999999999998888 6788888764444433321 234444
Q ss_pred EcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCC
Q 047035 254 DISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNL 333 (783)
Q Consensus 254 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 333 (783)
++++|.+++ +|.. .++|++|++++|.+.+ +|. ..++|+.|++++|.+..+... .++|++|++++|.+
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL 143 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC
Confidence 444444442 2221 2344444444444442 332 124445555544444322211 14677888888888
Q ss_pred CccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhh
Q 047035 334 KVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNM 413 (783)
Q Consensus 334 ~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 413 (783)
+.+| .+..+++|++|++++|++.+ +|.. .++|++|++++|.+++++ .+..+++|++|++++|++++ +|..
T Consensus 144 ~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~~- 213 (454)
T 1jl5_A 144 EKLP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPDL- 213 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCCC-
T ss_pred CCCc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCCC-
Confidence 8877 47888888888888888874 6642 358899999999888863 46788899999999999884 5542
Q ss_pred hhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCc
Q 047035 414 GIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQL 493 (783)
Q Consensus 414 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 493 (783)
.++|++|++++|.++ .+| .+..+++|++|++++|+++ .+|. ..++|++|++++|++.+ +|.. +++|
T Consensus 214 ---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L 279 (454)
T 1jl5_A 214 ---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSL 279 (454)
T ss_dssp ---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred ---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcC
Confidence 358999999999988 677 4889999999999999998 4554 24789999999999887 4443 4789
Q ss_pred cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573 (783)
Q Consensus 494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 573 (783)
++|++++|.+++. +.. .++|++|++++|.+++ ++.. .++|++|++++|++++ +|.. +++|++|++++|
T Consensus 280 ~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 280 TFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp CEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 9999999999862 221 3689999999999985 2221 2589999999999986 6654 588999999999
Q ss_pred ccccccccccCcCCCcEEEccCCcccc--cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc--c
Q 047035 574 RLFGSIASSLNLSSIMHLYLQNNALSG--QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG--Q 649 (783)
Q Consensus 574 ~l~~~~p~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~--~ 649 (783)
+++ .+|. .+++|++|++++|++++ .+|.++.. ++.|.+.+.+|.. +++|+.|++++|++++ .
T Consensus 348 ~l~-~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 348 HLA-EVPE--LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp CCS-CCCC--CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC------------------------------
T ss_pred ccc-cccc--hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCcccc
Confidence 998 4666 57899999999999998 67776543 3457788888874 5789999999999997 6
Q ss_pred CCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035 650 IPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681 (783)
Q Consensus 650 ~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 681 (783)
+|. +++.|++.+|.+.+.+|.+....
T Consensus 414 iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 414 IPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp --------------------------------
T ss_pred chh------hHhheeCcCcccCCccccCHHHh
Confidence 774 45677899999999888766544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.7e-37 Score=338.78 Aligned_cols=379 Identities=21% Similarity=0.218 Sum_probs=204.1
Q ss_pred EEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccC-C-CcCCCCCCCEEEcc
Q 047035 130 TLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSL-T-ELAPFRNLKVLGMR 207 (783)
Q Consensus 130 ~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L~ 207 (783)
.++.+++.++.. |. + .++|++|++++|.+++..+. .++++++|++|++++|.+.+.+ + .+..+++|++|+++
T Consensus 14 ~~~c~~~~l~~l-p~--l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 14 NAICINRGLHQV-PE--L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp EEECCSSCCSSC-CC--C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCcCCCCcccC-CC--C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 455555555443 31 1 14556666666655554332 4555555666666555554322 2 45555555555555
Q ss_pred CccCcccCCcccccCCCCCcEEEccCccccccCCcc--ccCCCCCCEEEcccccCCccCchh-hcCCCCCCEEeCcCCcc
Q 047035 208 NNLLNGSVESKGICELKNLTELDLGENNLEGQLPWC--LSDLIGLKVLDISFNHLSGNLPSV-IANLTSLEYLALSDNNF 284 (783)
Q Consensus 208 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 284 (783)
+|.+++..+ ..++++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccCh-hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 555543333 44555555555555555555433322 555555555555555555444443 45555555555555555
Q ss_pred ceecChhhhcCCCCCcEEEeccCcccccCCCCCCCC--ccccEEeCCCCCCCccChh---------hhcCCCCCEEEccC
Q 047035 285 QGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPT--FQLKVLQLPNCNLKVIPSF---------LLHQYDFKFLDLSS 353 (783)
Q Consensus 285 ~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~L~~~~l~~ip~~---------l~~~~~L~~L~Ls~ 353 (783)
.+ .....+..+ .+++.+++++|.+..++.. +..+++|++|++++
T Consensus 167 ~~-------------------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 167 KS-------------------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp SC-------------------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred cc-------------------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence 43 333222222 4566667777766654432 23445677777777
Q ss_pred CcccCCCChhhhhc--CCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCccc
Q 047035 354 NKLVGNFPTWLMQN--NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFE 431 (783)
Q Consensus 354 n~l~~~~p~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 431 (783)
|.+.+..|..+... .++|+.|++++|...+.. . ..+.+.+
T Consensus 222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~-------------~~~~~~~------------------------ 263 (455)
T 3v47_A 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-F-------------GHTNFKD------------------------ 263 (455)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC-T-------------TCCSSCC------------------------
T ss_pred CcccccchhhhhccccccceeeEeeccccccccc-c-------------chhhhcc------------------------
Confidence 77776666655422 255566666555443321 0 0011110
Q ss_pred ccCCcccc--CCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccc
Q 047035 432 GNIPYSIG--EMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKA 509 (783)
Q Consensus 432 ~~~p~~l~--~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 509 (783)
..+..+. ..++|+.|++++|.+.+..| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+.
T Consensus 264 -~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 264 -PDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp -CCTTTTGGGTTSCCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred -CcccccccccccCceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 1111111 12345555555555543222 2234555555555555555555555566666666666666666665566
Q ss_pred ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccc
Q 047035 510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIA 580 (783)
Q Consensus 510 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 580 (783)
.+..+++|++|++++|.+++..|.+++++++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 66666777777777777776667777777777777777777776555566677777777777777776655
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=327.67 Aligned_cols=169 Identities=26% Similarity=0.275 Sum_probs=116.9
Q ss_pred cccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCC
Q 047035 96 DSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNL 175 (783)
Q Consensus 96 ~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 175 (783)
..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++++++|++|++++|.+++. .++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~----~~~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL----DVTPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC----CCTTC
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee----ecCCC
Confidence 4566778888888888887753 3 577788888888888887775 2 67777888888888877764 26677
Q ss_pred CCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEc
Q 047035 176 TNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDI 255 (783)
Q Consensus 176 ~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 255 (783)
++|++|++++|++++. .++.+++|++|++++|.+++ ++ ++.+++|++|++++|...+.+ .+..+++|++|++
T Consensus 106 ~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSCC--CCTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCee--cCCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 7788888887777764 26677777777777777764 22 666777777777777544444 3566666777777
Q ss_pred ccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035 256 SFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 256 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
++|++++ +| +..+++|++|++++|.++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 7776664 33 556666666666666655
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.2e-35 Score=325.86 Aligned_cols=345 Identities=23% Similarity=0.278 Sum_probs=241.9
Q ss_pred CCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEE
Q 047035 271 LTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLD 350 (783)
Q Consensus 271 l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~ 350 (783)
+++++.|++.++.+. .+|. +..+++ |++|++++|.++.++. +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~------------------------L~~L~Ls~n~l~~~~~-~~~l~~L~~L~ 96 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNN------------------------LTQINFSNNQLTDITP-LKNLTKLVDIL 96 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTT------------------------CCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcC------------------------CCEEECCCCccCCchh-hhccccCCEEE
Confidence 456667777766655 3442 444444 4555555555555554 55666666666
Q ss_pred ccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcc
Q 047035 351 LSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF 430 (783)
Q Consensus 351 Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 430 (783)
+++|.+.+..+ +.++++|++|++++|.+++.. ++..+++|++|++++|.+.+ ++. + ..+++|++|+++ |.+
T Consensus 97 l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 97 MNNNQIADITP---LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-ISA-L-SGLTSLQQLSFG-NQV 167 (466)
T ss_dssp CCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECC-CGG-G-TTCTTCSEEEEE-ESC
T ss_pred CCCCccccChh---hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCC-Chh-h-ccCCcccEeecC-Ccc
Confidence 66666653332 235666666666666666653 25566667777777766653 332 2 356677777775 333
Q ss_pred cccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccc
Q 047035 431 EGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAG 510 (783)
Q Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 510 (783)
.+.. .+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 238 (466)
T 1o6v_A 168 TDLK--PLANLTTLERLDISSNKVSD-IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GT 238 (466)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred cCch--hhccCCCCCEEECcCCcCCC-Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hh
Confidence 3222 26677777777777777763 33 25677788888888887776544 56677888888888887743 34
Q ss_pred cccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcE
Q 047035 511 LLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMH 590 (783)
Q Consensus 511 l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~ 590 (783)
+..+++|++|++++|.+.+..| +..+++|+.|++++|++++..+ +..+++|++|++++|++.+..+ ...+++|++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 313 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTY 313 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSE
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCE
Confidence 6778888888888888876554 7788888888888888886544 7788888888888888876544 337888888
Q ss_pred EEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035 591 LYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670 (783)
Q Consensus 591 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 670 (783)
|++++|++++..| +..+++|+.|++++|++.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 8998888886655 67888999999999988765 468888999999999999987776 78889999999999988
Q ss_pred cc
Q 047035 671 NG 672 (783)
Q Consensus 671 ~g 672 (783)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 87
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-34 Score=319.62 Aligned_cols=346 Identities=24% Similarity=0.274 Sum_probs=255.5
Q ss_pred CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccE
Q 047035 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKV 325 (783)
Q Consensus 246 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 325 (783)
.+++++.|++.++.+.. +| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n------------------ 100 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNN------------------ 100 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS------------------
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCC------------------
Confidence 45789999999999984 55 48899999999999999884 443 667776666665544
Q ss_pred EeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcC
Q 047035 326 LQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNL 405 (783)
Q Consensus 326 L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 405 (783)
.+..++. +..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+.. .+..+++|++|+++ |.+
T Consensus 101 ------~l~~~~~-~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 101 ------QIADITP-LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ------CCCCCGG-GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESC
T ss_pred ------ccccChh-hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-Ccc
Confidence 4444444 55556666666666665532 22 235666666666666666552 34566677777775 344
Q ss_pred CCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCC
Q 047035 406 TGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP 485 (783)
Q Consensus 406 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 485 (783)
.+ ++. + ..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+. +
T Consensus 168 ~~-~~~-~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~ 237 (466)
T 1o6v_A 168 TD-LKP-L-ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--G 237 (466)
T ss_dssp CC-CGG-G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--G
T ss_pred cC-chh-h-ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--h
Confidence 32 222 2 3567777777777777643 346777888888888888775433 45678888888888887763 4
Q ss_pred cccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCC
Q 047035 486 TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQL 565 (783)
Q Consensus 486 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 565 (783)
.+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 57778888888888888876554 7778888888888888886544 7788889999999998886544 7788899
Q ss_pred CEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY 645 (783)
Q Consensus 566 ~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 645 (783)
++|++++|++.+..| ...+++|++|++++|++++. ..+.++++|+.|++++|++.+..| +..+++|+.|++++|.
T Consensus 312 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 999999999887666 33788999999999998854 468889999999999999988777 8889999999999999
Q ss_pred ccc
Q 047035 646 LQG 648 (783)
Q Consensus 646 l~~ 648 (783)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 986
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=321.08 Aligned_cols=351 Identities=19% Similarity=0.163 Sum_probs=247.5
Q ss_pred cEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccC
Q 047035 324 KVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNN 403 (783)
Q Consensus 324 ~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 403 (783)
+.++.+++.++.+|..+. ++++.|++++|.+.+..+..+ ..+++|++|++++|.++++.+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 467778888888886543 578888888888875544444 37788888888888887776666677788888888888
Q ss_pred cCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccC
Q 047035 404 NLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHI 483 (783)
Q Consensus 404 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 483 (783)
+++ .+|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ++...+..+++|++|++++|++.+..
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence 776 4555444567788888888888877777777778888888888887763 44444567777888888887777655
Q ss_pred CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCC
Q 047035 484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 563 (783)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 563 (783)
+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 55677777788888888777776666777777788888877777766766666666777777777777755445677777
Q ss_pred CCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCc
Q 047035 564 QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLR 642 (783)
Q Consensus 564 ~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 642 (783)
+|++|+|++|++.+..+..+ .+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77777777777776666666 77777777777777777777777777777777777777776666667777777777777
Q ss_pred CCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035 643 GNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 643 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 680 (783)
+|.+.+.-+. ..-......+++.++.....-|..+..
T Consensus 329 ~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~~~~g 365 (477)
T 2id5_A 329 SNPLACDCRL-LWVFRRRWRLNFNRQQPTCATPEFVQG 365 (477)
T ss_dssp SSCEECSGGG-HHHHTTTTSSCCTTCCCBEEESGGGTT
T ss_pred CCCccCccch-HhHHhhhhccccCccCceeCCchHHcC
Confidence 7777644321 111122333444555544444544433
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=318.53 Aligned_cols=320 Identities=20% Similarity=0.161 Sum_probs=163.7
Q ss_pred EEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCC
Q 047035 348 FLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISK 427 (783)
Q Consensus 348 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~ 427 (783)
.++.+++.+. .+|..+. ++++.|++++|.++++.+..+..+++|++|++++|.+++..|..+. .+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCC
Confidence 4444444444 3443221 3455555555555554444445555555555555555533333332 455555555555
Q ss_pred CcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccccc
Q 047035 428 NNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKI 507 (783)
Q Consensus 428 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 507 (783)
|.+++..+..|.++++|++|++++|++.+. +...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 555543334445555555555555555422 2223345555555555555555544445555555555555555555444
Q ss_pred ccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcC
Q 047035 508 KAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLS 586 (783)
Q Consensus 508 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~ 586 (783)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|++|++++|++.+..+..+ .++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 4445555555555555555555555555555555555555555544444444444455555555555543222333 455
Q ss_pred CCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecC
Q 047035 587 SIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLS 666 (783)
Q Consensus 587 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls 666 (783)
+|++|+|++|.+++..+..|.++++|+.|+|++|++.+..|..+..+++|+.|++++|++++..+..|..+++|+.|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 55555555555554444455555555555555555555555555555555555555555554444444555555555555
Q ss_pred CCcCccc
Q 047035 667 HNKLNGS 673 (783)
Q Consensus 667 ~N~l~g~ 673 (783)
+|++.+.
T Consensus 329 ~N~l~c~ 335 (477)
T 2id5_A 329 SNPLACD 335 (477)
T ss_dssp SSCEECS
T ss_pred CCCccCc
Confidence 5555543
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.6e-35 Score=306.37 Aligned_cols=273 Identities=26% Similarity=0.407 Sum_probs=234.1
Q ss_pred CCCCcCCCCCCCCcc--cceeEecCCC--CcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCC-CCCCCC
Q 047035 15 ILTSWVDDGISDCCD--WERVTCDATA--GQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSG-NYFDGW 89 (783)
Q Consensus 15 ~~~~W~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~ 89 (783)
.+++|..+ +|||. |.||+|+... ++|+.++++++.+ .+...-+..|..+++|++|++++ |.+.+.
T Consensus 23 ~l~~W~~~--~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l--------~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~ 92 (313)
T 1ogq_A 23 TLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL--------PKPYPIPSSLANLPYLNFLYIGGINNLVGP 92 (313)
T ss_dssp GGTTCCTT--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCC--------SSCEECCGGGGGCTTCSEEEEEEETTEESC
T ss_pred cccCCCCC--CCCCcCCCcceEeCCCCCCceEEEEECCCCCc--------cCCcccChhHhCCCCCCeeeCCCCCccccc
Confidence 68999754 68998 9999998654 8999999999876 22112345789999999999995 888888
Q ss_pred CCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc
Q 047035 90 NENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATR 169 (783)
Q Consensus 90 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~ 169 (783)
.| ..++++++|++|+|++|.+++.+|..++.+++|++|++++|.+.+.+|. .+.++++|++|++++|.+++..+.
T Consensus 93 ~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 93 IP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPD 167 (313)
T ss_dssp CC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCG
T ss_pred CC----hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCH
Confidence 77 7789999999999999999988999999999999999999999988775 799999999999999999865553
Q ss_pred cccCCCC-CCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCC
Q 047035 170 LGLGNLT-NLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDL 247 (783)
Q Consensus 170 ~~l~~l~-~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 247 (783)
.++.++ +|++|++++|++++..+ .+..++ |++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. +..+
T Consensus 168 -~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l 243 (313)
T 1ogq_A 168 -SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243 (313)
T ss_dssp -GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-GGCCTTSCCSEEECCSSEECCBGGG-CCCC
T ss_pred -HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-HHHhcCCCCCEEECCCCceeeecCc-cccc
Confidence 688887 99999999999997766 777777 9999999999987665 7889999999999999999876665 8889
Q ss_pred CCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCc
Q 047035 248 IGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSS 308 (783)
Q Consensus 248 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~ 308 (783)
++|++|++++|.+++.+|.++..+++|++|++++|+++|.+|.. ..+++|+.+++++|+
T Consensus 244 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 99999999999999899999999999999999999999888853 666777766666655
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.5e-33 Score=292.71 Aligned_cols=250 Identities=28% Similarity=0.420 Sum_probs=173.4
Q ss_pred CceEEeCCCCcccc--cCCccccCCCCCCeeeccC-CcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccE
Q 047035 419 KLMYIDISKNNFEG--NIPYSIGEMKELFLLDLSR-NKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRW 495 (783)
Q Consensus 419 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 495 (783)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|.. +..+++|++|++++|++.+.+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45555555555555 5555556666666666663 5555555543 345666666666666666556666666666666
Q ss_pred EEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCC-CCcEEECCCCcccccCcccccCCCCCCEEeCCCcc
Q 047035 496 LYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS-YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENR 574 (783)
Q Consensus 496 L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 574 (783)
|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 66666666666666666666677777777766666666666666 677777777777766777666665 7777777777
Q ss_pred ccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcc
Q 047035 575 LFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIA 653 (783)
Q Consensus 575 l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 653 (783)
+.+.+|..+ .+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|.++..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 776666666 677777777777777755554 667788888888888888888888888888888888888888888875
Q ss_pred hhCCCCCCEEecCCCc-Ccc
Q 047035 654 LCQLQKLGILDLSHNK-LNG 672 (783)
Q Consensus 654 l~~l~~L~~L~ls~N~-l~g 672 (783)
+.+++|+.+++++|+ +.|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 778888888888887 555
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.4e-31 Score=285.93 Aligned_cols=305 Identities=23% Similarity=0.310 Sum_probs=207.6
Q ss_pred cCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCce
Q 047035 342 HQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLM 421 (783)
Q Consensus 342 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~ 421 (783)
.+++|+.|+++++.+. .++. ...+++|++|++++|.+++... +..+++|++|++++|.+++ +| .+ ..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~-~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-AL-QNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GG-TTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HH-cCCCcCC
Confidence 3444555555555444 2332 2245555555555555555432 4455666666666665552 33 22 3566666
Q ss_pred EEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035 422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501 (783)
Q Consensus 422 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (783)
+|++++|.+.+. +. +..+++|+.|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 666666666532 22 66667777777777755434433 4567777777777777665332 667777777777777
Q ss_pred ccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccc
Q 047035 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS 581 (783)
Q Consensus 502 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 581 (783)
.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++.+ ++.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~ 260 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INA 260 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Chh
Confidence 7764333 6677788888888887775444 6777888888888888875433 7788888888888888875 343
Q ss_pred ccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCC
Q 047035 582 SLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661 (783)
Q Consensus 582 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 661 (783)
...+++|++|++++|++++ + ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|++++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 3378888888888888875 3 457888999999999999988888889999999999999999987666 88899999
Q ss_pred EEecCCCcCc
Q 047035 662 ILDLSHNKLN 671 (783)
Q Consensus 662 ~L~ls~N~l~ 671 (783)
.||+++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999875
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.8e-32 Score=292.12 Aligned_cols=310 Identities=19% Similarity=0.210 Sum_probs=215.2
Q ss_pred CCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceE
Q 047035 343 QYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMY 422 (783)
Q Consensus 343 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~ 422 (783)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..+..+++|++|++++|.+++..|..+ ..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCE
Confidence 345666666666654 4555544566666666666666666554455666677777777777664434333 35667777
Q ss_pred EeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc
Q 047035 423 IDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH 502 (783)
Q Consensus 423 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 502 (783)
|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|++++. .+..+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 777777776433334566777777777777776 34444456677777777777776653 24556777777777776
Q ss_pred cccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccc
Q 047035 503 FTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASS 582 (783)
Q Consensus 503 l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 582 (783)
+++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|++.+..|..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 653 22345677788888777644 322 246788888888888753 46777888888888888888777777
Q ss_pred c-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCC
Q 047035 583 L-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLG 661 (783)
Q Consensus 583 ~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 661 (783)
+ .+++|++|++++|++++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|++++. | +..+++|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 7 78888888888888874 5666677888999999999886 5677788888999999999998744 3 67788999
Q ss_pred EEecCCCcCccc
Q 047035 662 ILDLSHNKLNGS 673 (783)
Q Consensus 662 ~L~ls~N~l~g~ 673 (783)
.|++++|++.+.
T Consensus 343 ~L~l~~N~~~~~ 354 (390)
T 3o6n_A 343 NLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEcCCCCccch
Confidence 999999999864
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-32 Score=292.36 Aligned_cols=309 Identities=22% Similarity=0.230 Sum_probs=245.3
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCC
Q 047035 72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLR 151 (783)
Q Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~ 151 (783)
.++++++|+++++.+...++ ..+..+++|++|+|++|.+++..+..++.+++|++|+|++|.+.+..| ..+++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred ccCCceEEEecCCchhhCCh----hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCC
Confidence 46899999999998876654 557889999999999999988777889999999999999999998765 4789999
Q ss_pred CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEE
Q 047035 152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230 (783)
Q Consensus 152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 230 (783)
+|++|++++|.+...+.. .++++++|++|++++|.+++..+ .+..+++|++|++++|.+++ + .+..+++|++|+
T Consensus 118 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V---DLSLIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-C---CGGGCTTCSEEE
T ss_pred CCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-c---ccccccccceee
Confidence 999999999999976653 57889999999999999988777 68999999999999999874 2 366789999999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310 (783)
Q Consensus 231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~ 310 (783)
+++|.+.+ +...++|++|++++|.+... |.. ..++|++|++++|.+.+. + .+..+++|++|++++|.+.
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCC
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCC
Confidence 99998874 33456899999999998744 432 357899999999998843 3 4778888888888888877
Q ss_pred ccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCcc
Q 047035 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV 390 (783)
Q Consensus 311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 390 (783)
......+..+++|++|++++|.++.+|.....+++|++|++++|++. .+|..+. .+++|++|++++|.++.. +..
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~---~~~ 336 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLS 336 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCC
T ss_pred CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee---Cch
Confidence 77667777778888888888888877776667778888888888776 4555543 567777777777776654 344
Q ss_pred CCCCccEEEcccCcCC
Q 047035 391 KHDLLRHLDISNNNLT 406 (783)
Q Consensus 391 ~~~~L~~L~L~~n~l~ 406 (783)
.+++|++|++++|++.
T Consensus 337 ~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWD 352 (390)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hhccCCEEEcCCCCcc
Confidence 5566666666666554
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.6e-31 Score=280.61 Aligned_cols=288 Identities=26% Similarity=0.308 Sum_probs=207.1
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhc
Q 047035 68 SLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGL 147 (783)
Q Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l 147 (783)
..+..+++|++|+++++.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + .+
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~--~~ 106 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S--AL 106 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G--GG
T ss_pred ccchhcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h--HH
Confidence 4456788999999999988654 347789999999999999886433 88999999999999998875 3 58
Q ss_pred cCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCc
Q 047035 148 ANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLT 227 (783)
Q Consensus 148 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~ 227 (783)
.++++|++|++++|.+..... +..+++|++|++++|.....++.+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 107 ~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~--~~~~l~~L~ 180 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-T--PIANLTDLY 180 (347)
T ss_dssp TTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCS
T ss_pred cCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-h--hhccCCCCC
Confidence 999999999999999887653 7889999999999997666666788899999999999988643 2 277889999
Q ss_pred EEEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035 228 ELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307 (783)
Q Consensus 228 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~ 307 (783)
+|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP--LANLSQLTWLEIGTN 253 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSS
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc--hhcCCCCCEEECCCC
Confidence 99999998875332 7888899999999998885543 7888899999999988873 443 667777777777666
Q ss_pred cccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccC
Q 047035 308 SNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSG 383 (783)
Q Consensus 308 ~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 383 (783)
.+... ..+..+++|++|++++|.++.++ .+..+++|+.|++++|++.+..|..+. .+++|++|++++|++++
T Consensus 254 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 254 QISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCC
T ss_pred ccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCcccc
Confidence 55433 23444555555555555555442 244445555555555554433333322 34444444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.5e-31 Score=303.29 Aligned_cols=308 Identities=19% Similarity=0.213 Sum_probs=158.0
Q ss_pred CCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEe
Q 047035 345 DFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYID 424 (783)
Q Consensus 345 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~ 424 (783)
+++.+++++|.+. .+|..++..+++|++|++++|.+.++.+..+..+++|++|++++|.+++..|..+ ..+++|++|+
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 129 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLV 129 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEE
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCEEE
Confidence 4444444444443 3333333344555555555555444433344445555555555555543322222 2445555555
Q ss_pred CCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccc
Q 047035 425 ISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFT 504 (783)
Q Consensus 425 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 504 (783)
+++|.+++..+..|..+++|+.|++++|.+++ ++...+..+++|++|++++|.+.+. .+..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 55555553333334555555555555555542 2223334455555555555555442 1333455555555555544
Q ss_pred cccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-
Q 047035 505 GKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL- 583 (783)
Q Consensus 505 ~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~- 583 (783)
+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|++|+|++|.+.+.+|..+
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 2 122345555555555554332221 1355556666665554 2445555666666666666655555555
Q ss_pred CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEE
Q 047035 584 NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGIL 663 (783)
Q Consensus 584 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 663 (783)
.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|++. .+|.++..+++|+.|+|++|.+++. | +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 55666666666666653 4445555666666666666665 4555566666666666666666533 2 4555666666
Q ss_pred ecCCCcCccc
Q 047035 664 DLSHNKLNGS 673 (783)
Q Consensus 664 ~ls~N~l~g~ 673 (783)
++++|++++.
T Consensus 351 ~l~~N~~~~~ 360 (597)
T 3oja_B 351 TLSHNDWDCN 360 (597)
T ss_dssp ECCSSCEEHH
T ss_pred EeeCCCCCCh
Confidence 6666666654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=5.3e-31 Score=301.80 Aligned_cols=309 Identities=22% Similarity=0.239 Sum_probs=244.3
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCC
Q 047035 72 PFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLR 151 (783)
Q Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~ 151 (783)
.+++++.+++++|.+...++ ..+..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+.+..| ..+++++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPA----ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECT----HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCH----HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCC
Confidence 46789999999998877655 567888999999999999988778889999999999999999988765 4789999
Q ss_pred CCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEE
Q 047035 152 NLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELD 230 (783)
Q Consensus 152 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~ 230 (783)
+|++|++++|.+...++. .++++++|++|++++|.+++.++ .++.+++|++|++++|.+++ ++ +..+++|+.|+
T Consensus 124 ~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHAN 198 (597)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEE
T ss_pred CCCEEEeeCCCCCCCCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhh
Confidence 999999999999877653 57889999999999999988777 78899999999999998874 23 56688899999
Q ss_pred ccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCccc
Q 047035 231 LGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNL 310 (783)
Q Consensus 231 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~ 310 (783)
+++|.+.+ +...++|+.|++++|.+... |..+ .++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC
T ss_pred cccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccC
Confidence 99998774 34456899999999988743 3322 36899999999988852 34778888888888888877
Q ss_pred ccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCcc
Q 047035 311 RLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKV 390 (783)
Q Consensus 311 ~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 390 (783)
...+..+..+++|++|++++|.++.+|.....+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+. +..
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~---~~~ 342 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL---KLS 342 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC---CCC
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc---Chh
Confidence 77667777778888888888888877777777778888888888777 5666553 667777777777777654 345
Q ss_pred CCCCccEEEcccCcCC
Q 047035 391 KHDLLRHLDISNNNLT 406 (783)
Q Consensus 391 ~~~~L~~L~L~~n~l~ 406 (783)
.+++|+.|++++|.+.
T Consensus 343 ~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 343 THHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCCCSEEECCSSCEE
T ss_pred hcCCCCEEEeeCCCCC
Confidence 5566666666666654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-30 Score=274.36 Aligned_cols=287 Identities=19% Similarity=0.196 Sum_probs=193.0
Q ss_pred CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449 (783)
Q Consensus 370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 449 (783)
+++.++++++.++.++ ..-.+.+++|++++|.+.+..|..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip---~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP---KEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCC---SCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccC---CCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666655432 2223566777777776664333333 35677777777777777666777777777777777
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc--ccccccccCCCCcEEEccCCcc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLL 527 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l 527 (783)
++|+++ .+|...+ ++|++|++++|++.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777776 5555433 677777777777776555567777777777777777742 455666655 777777777777
Q ss_pred cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL 606 (783)
Q Consensus 528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l 606 (783)
++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 74 454443 577777777777777666777777777777777777776666555 6777777777777777 677777
Q ss_pred hcCCCCcEEECcCCccccCCchhccC------CcCCCEEeCcCCccc--ccCCcchhCCCCCCEEecCCCc
Q 047035 607 FRSTELLTLDLRDNKFFGRIPDQINN------HSELRVLLLRGNYLQ--GQIPIALCQLQKLGILDLSHNK 669 (783)
Q Consensus 607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 669 (783)
..+++|+.|++++|++++..+..+.. .+.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77777777777777777665555543 356777777777776 5556667777777777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.8e-30 Score=271.24 Aligned_cols=291 Identities=24% Similarity=0.307 Sum_probs=201.1
Q ss_pred CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 498 (783)
+++.++++++.++ .+|..+. ++|+.|++++|.+. .++...+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3555555555554 3444332 45566666666655 333334456666666666666666655566666666666666
Q ss_pred cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc--ccCcccccCCCCCCEEeCCCcccc
Q 047035 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE--GNIPVQINNFRQLQLLDLSENRLF 576 (783)
Q Consensus 499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~ 576 (783)
++|.++ .+|..+. ++|++|++++|.+.+..+..++++++|+.|++++|.++ +..|..+..+ +|++|++++|++.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 666666 3444332 67777777777777666666777777777777777775 3566667666 7888888888877
Q ss_pred cccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035 577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ 656 (783)
Q Consensus 577 ~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 656 (783)
+ +|..+ .++|++|++++|.+++..|..+.++++|+.|++++|++.+..|.++..+++|+.|++++|+++ .+|..++.
T Consensus 186 ~-l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 G-IPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp S-CCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred c-cCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 5 44433 267888888888888777788888889999999999988877778888899999999999888 78888889
Q ss_pred CCCCCEEecCCCcCcccCCcchhhccccccCCCcccCCcceeeeecCCcccccccccccccccccCCCCccccccceEEE
Q 047035 657 LQKLGILDLSHNKLNGSIPSCFVNMLFWREGNGDLYGSGLYIYFQLGGLHSIGTYYNSTLDLWLFGDDYITLPQRARVQF 736 (783)
Q Consensus 657 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (783)
+++|+.|++++|++++.-+..|......
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~---------------------------------------------------- 290 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFG---------------------------------------------------- 290 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCC----------------------------------------------------
T ss_pred CccCCEEECCCCCCCccChhHccccccc----------------------------------------------------
Confidence 9999999999998875444433221100
Q ss_pred EeccceeeecCCccCcceeEeccCCcCc--ccCCccccCcCCCccccCC
Q 047035 737 VTKNRYEFYNGSNLNYMSGIDLSYNELT--GEIPSEIGELPKVRALNLS 783 (783)
Q Consensus 737 ~~~~~~~~~~~~~l~~l~~ldls~N~l~--g~ip~~~~~l~~L~~lnls 783 (783)
.....++.|++++|.++ +..|..+..++.|+.++++
T Consensus 291 -----------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 291 -----------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp -----------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred -----------cccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 01234677888888887 6667778888888888774
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.9e-33 Score=312.87 Aligned_cols=351 Identities=20% Similarity=0.180 Sum_probs=264.1
Q ss_pred CccccEEeCCCCCCCcc--ChhhhcCCCCCEEEccCCcccCC----CChhhhhcCCCCcEEEccCccccCcccCCc-cCC
Q 047035 320 TFQLKVLQLPNCNLKVI--PSFLLHQYDFKFLDLSSNKLVGN----FPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKH 392 (783)
Q Consensus 320 ~~~L~~L~L~~~~l~~i--p~~l~~~~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~ 392 (783)
++++++|+++++.++.. ...+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.+.+.....+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35789999999998833 33477889999999999998743 33333 367999999999998876422111 223
Q ss_pred C----CccEEEcccCcCCC----CCChhhhhhcCCceEEeCCCCcccccCCccc-----cCCCCCCeeeccCCcCccccC
Q 047035 393 D----LLRHLDISNNNLTG----MLPQNMGIVIQKLMYIDISKNNFEGNIPYSI-----GEMKELFLLDLSRNKFSGDLS 459 (783)
Q Consensus 393 ~----~L~~L~L~~n~l~~----~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~i~ 459 (783)
+ +|++|++++|++++ .++..+ ..+++|++|++++|.+++..+..+ ...++|++|++++|++++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 3 69999999998874 234444 367899999999999875433332 235679999999998875321
Q ss_pred ---hhhhhcCCCCcEEECcCccccccCCCccc-----CCCCccEEEccCcccccc----cccccccCCCCcEEEccCCcc
Q 047035 460 ---ATSVIRCASLEYLDVSENNFYGHIFPTYM-----NLTQLRWLYLKNNHFTGK----IKAGLLNSHGLVVLDISNNLL 527 (783)
Q Consensus 460 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~Ls~n~l 527 (783)
...+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 23345678999999999988764433332 356899999999998864 566777889999999999988
Q ss_pred cccC-----CCCcCCCCCCcEEECCCCccccc----CcccccCCCCCCEEeCCCccccccccccc------CcCCCcEEE
Q 047035 528 SGHI-----PCWIGNFSYLDVLLMSKNHLEGN----IPVQINNFRQLQLLDLSENRLFGSIASSL------NLSSIMHLY 592 (783)
Q Consensus 528 ~~~~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~l~~L~~L~ 592 (783)
.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|++.+..+..+ ..++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 7532 33334678899999999998864 67777788999999999998875444333 236899999
Q ss_pred ccCCccccc----CchhhhcCCCCcEEECcCCccccCCchhccC-----CcCCCEEeCcCCcccc----cCCcchhCCCC
Q 047035 593 LQNNALSGQ----IPSTLFRSTELLTLDLRDNKFFGRIPDQINN-----HSELRVLLLRGNYLQG----QIPIALCQLQK 659 (783)
Q Consensus 593 L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~l~~l~~ 659 (783)
+++|.+++. ++..+..+++|++|++++|++.+..+..+.. .++|+.|++++|++++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 999998865 5677778899999999999987765555542 6789999999999986 77888888999
Q ss_pred CCEEecCCCcCcc
Q 047035 660 LGILDLSHNKLNG 672 (783)
Q Consensus 660 L~~L~ls~N~l~g 672 (783)
|+.||+++|++++
T Consensus 400 L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 400 LRELDLSNNCLGD 412 (461)
T ss_dssp CCEEECCSSSCCH
T ss_pred ccEEECCCCCCCH
Confidence 9999999998874
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-29 Score=268.87 Aligned_cols=288 Identities=20% Similarity=0.198 Sum_probs=180.4
Q ss_pred CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449 (783)
Q Consensus 370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 449 (783)
+++.++++++.++.++ ..-.+.+++|++++|++++..+..+ ..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp---~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP---KDLPPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCC---CSCCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccC---ccCCCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4455555555444331 1123456666666666653333233 35666666666666666666666666677777777
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccccc--ccccccccCCCCcEEEccCCcc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTG--KIKAGLLNSHGLVVLDISNNLL 527 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~Ls~n~l 527 (783)
++|.++ .+|...+ ++|++|++++|++.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 776665 4554432 566777777776666555556666777777777776642 4555666677777777777776
Q ss_pred cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL 606 (783)
Q Consensus 528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l 606 (783)
.. +|..+. ++|++|++++|++++..|..+..+++|++|++++|++.+..+..+ .+++|++|++++|+++ .+|..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 63 444433 667777777777776666777777777777777777776655555 6677777777777776 667777
Q ss_pred hcCCCCcEEECcCCccccCCchhccC------CcCCCEEeCcCCcccc--cCCcchhCCCCCCEEecCCCc
Q 047035 607 FRSTELLTLDLRDNKFFGRIPDQINN------HSELRVLLLRGNYLQG--QIPIALCQLQKLGILDLSHNK 669 (783)
Q Consensus 607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 669 (783)
..+++|++|++++|++++..+..+.. .+.++.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777777777777776655555532 3567777777777643 345667777777777777764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-33 Score=313.80 Aligned_cols=385 Identities=19% Similarity=0.100 Sum_probs=278.1
Q ss_pred CCCCEEeCcCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCC-----ccChhhhcCCCC
Q 047035 272 TSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLK-----VIPSFLLHQYDF 346 (783)
Q Consensus 272 ~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-----~ip~~l~~~~~L 346 (783)
++|++|++++|.+........+..+++|++|++ ++|.++ .++..+..+++|
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L------------------------~~~~l~~~~~~~l~~~l~~~~~L 58 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRL------------------------DDCGLTEARCKDISSALRVNPAL 58 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEE------------------------ESSCCCHHHHHHHHHHHHTCTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEc------------------------cCCCCCHHHHHHHHHHHHhCCCc
Confidence 457778888877763332333555555555555 455554 345667777888
Q ss_pred CEEEccCCcccCCCChhhhhcCC----CCcEEEccCccccCcc----cCCccCCCCccEEEcccCcCCCCCChhhhhh--
Q 047035 347 KFLDLSSNKLVGNFPTWLMQNNT----KLEVLRLSNNSFSGIL----QLPKVKHDLLRHLDISNNNLTGMLPQNMGIV-- 416 (783)
Q Consensus 347 ~~L~Ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-- 416 (783)
++|++++|.+.+..+..+...++ +|++|++++|.++... +..+..+++|++|++++|.+++..+..+...
T Consensus 59 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp CEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 88888888877555555554555 6888888888877432 2334677888888888888765444444322
Q ss_pred --cCCceEEeCCCCccccc----CCccccCCCCCCeeeccCCcCccccChhhh----hcCCCCcEEECcCcccccc----
Q 047035 417 --IQKLMYIDISKNNFEGN----IPYSIGEMKELFLLDLSRNKFSGDLSATSV----IRCASLEYLDVSENNFYGH---- 482 (783)
Q Consensus 417 --l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~----~~l~~L~~L~L~~n~l~~~---- 482 (783)
.++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.... ...++|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 34699999999988764 355567788999999999988643322222 1356899999999988763
Q ss_pred CCCcccCCCCccEEEccCccccccc-----ccccccCCCCcEEEccCCccccc----CCCCcCCCCCCcEEECCCCcccc
Q 047035 483 IFPTYMNLTQLRWLYLKNNHFTGKI-----KAGLLNSHGLVVLDISNNLLSGH----IPCWIGNFSYLDVLLMSKNHLEG 553 (783)
Q Consensus 483 ~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 553 (783)
++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 4556677899999999999887543 22233578999999999998864 56777788999999999999876
Q ss_pred cCcccccC-----CCCCCEEeCCCcccccc----ccccc-CcCCCcEEEccCCcccccCchhhhc-----CCCCcEEECc
Q 047035 554 NIPVQINN-----FRQLQLLDLSENRLFGS----IASSL-NLSSIMHLYLQNNALSGQIPSTLFR-----STELLTLDLR 618 (783)
Q Consensus 554 ~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls 618 (783)
..+..+.. .++|++|++++|.+++. ++..+ .+++|++|++++|.+++..+..+.. .++|++|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 54444432 36899999999999865 45555 7799999999999998766665553 6799999999
Q ss_pred CCcccc----CCchhccCCcCCCEEeCcCCcccccCCcchh-----CCCCCCEEecCCCcCcccCCcchhh
Q 047035 619 DNKFFG----RIPDQINNHSELRVLLLRGNYLQGQIPIALC-----QLQKLGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 619 ~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~g~iP~~~~~ 680 (783)
+|++++ .+|..+..+++|+.|++++|++++.-...+. ....|+.|++.++.+....+..+..
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 999986 7888999999999999999999865322222 2457888999888887665554443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-29 Score=263.90 Aligned_cols=267 Identities=19% Similarity=0.218 Sum_probs=154.1
Q ss_pred CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449 (783)
Q Consensus 370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 449 (783)
.++.|++++|.++++....+..+++|++|++++|++++..|..+. .+++|++|++++|.++ .+|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 444444444444444333344455555555555555433344332 4555555555555554 3343332 45666666
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccc--cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYG--HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLL 527 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l 527 (783)
++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.+
T Consensus 129 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 666655 3444445556666666666665542 444555666666666666666653 333332 5666666666666
Q ss_pred cccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh
Q 047035 528 SGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL 606 (783)
Q Consensus 528 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l 606 (783)
.+..|..+..+++|+.|++++|++++..+..+..+++|++|++++|++. .+|..+ .+++|++|++++|++++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 6666666666666666666666666655556666666666666666665 455545 66667777777776665444444
Q ss_pred hc------CCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCc
Q 047035 607 FR------STELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNY 645 (783)
Q Consensus 607 ~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~ 645 (783)
.. .+.++.|++++|.+.. ..|..+..+.+++.++|++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 32 3667788888887753 456677778888888888774
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.4e-28 Score=252.48 Aligned_cols=231 Identities=20% Similarity=0.208 Sum_probs=162.7
Q ss_pred CCCeeeccCCcCccccChhhhhcCCCCcEEECcCcccccc--CCCcccCCCCccEEEccCcccccccccccccCCCCcEE
Q 047035 443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGH--IFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520 (783)
Q Consensus 443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 520 (783)
+|++|++++|.++ .+|...+..+++|++|++++|.+... .+..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4444444444444 34444444455555555555544421 1333444556666666666655 344456666777777
Q ss_pred EccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCc
Q 047035 521 DISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNA 597 (783)
Q Consensus 521 ~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~ 597 (783)
++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777765544 467777777777777777777777777777788888888887776 466666 77888888888888
Q ss_pred ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCcCcccCC
Q 047035 598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNKLNGSIP 675 (783)
Q Consensus 598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP 675 (783)
+++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 8877788888888899999999988877777888889999999999999988888888884 89999999999987543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=264.80 Aligned_cols=274 Identities=20% Similarity=0.194 Sum_probs=166.8
Q ss_pred EEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcC
Q 047035 397 HLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSE 476 (783)
Q Consensus 397 ~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 476 (783)
..+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|+++ .++...+..+++|++|++++
T Consensus 35 ~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCC
Confidence 3444444444 4444332 34555555555555444445555555555555555555 23333344555555555555
Q ss_pred ccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCC-cccccCCCCcCCCCCCcEEECCCCccccc
Q 047035 477 NNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNN-LLSGHIPCWIGNFSYLDVLLMSKNHLEGN 554 (783)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 554 (783)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..++++++|++|++++|++++.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 55554333335555555555555555553222 24555666666666665 34444455566666666666666666666
Q ss_pred CcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh---cCCCCcEEECcCCcccc----CC
Q 047035 555 IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF---RSTELLTLDLRDNKFFG----RI 626 (783)
Q Consensus 555 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~ 626 (783)
.|..+..+++|++|++++|++....+..+ .+++|++|++++|.+++..+..+. ..+.++.++++++.+.+ .+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 66666666666666666666643222222 466677777777776654443332 35667888888888766 47
Q ss_pred chhccCCcCCCEEeCcCCcccccCCcc-hhCCCCCCEEecCCCcCcccCCc
Q 047035 627 PDQINNHSELRVLLLRGNYLQGQIPIA-LCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 627 p~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|+++..+++|+.|++++|+++ .+|.. ++.+++|+.|++++|++++..|.
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 888999999999999999999 56666 58999999999999999998773
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.3e-28 Score=253.83 Aligned_cols=281 Identities=21% Similarity=0.242 Sum_probs=224.1
Q ss_pred cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc--cChhhhhcCCCCcEEE
Q 047035 396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD--LSATSVIRCASLEYLD 473 (783)
Q Consensus 396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--i~~~~~~~l~~L~~L~ 473 (783)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..+..+++|++|++++|.++.. ++.. +..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEE
Confidence 45666666665 566544 35788888888888744444577888888888888887622 2333 34688899999
Q ss_pred CcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc
Q 047035 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE 552 (783)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 552 (783)
+++|.+.+ ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 99888875 55667888999999999998886554 56888899999999999999888888999999999999999998
Q ss_pred c-cCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhc
Q 047035 553 G-NIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQI 630 (783)
Q Consensus 553 ~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 630 (783)
+ .+|..+..+++|++|++++|++.+..|..+ .+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 6 578889999999999999999988878777 88999999999999997777788999999999999999999999999
Q ss_pred cCCc-CCCEEeCcCCcccccCCc--chhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035 631 NNHS-ELRVLLLRGNYLQGQIPI--ALCQLQKLGILDLSHNKLNGSIPSCFVNML 682 (783)
Q Consensus 631 ~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 682 (783)
..++ +|+.|++++|.+++.-+. ...-+...+.+.+..+.+.+..|+.+.+..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 8885 999999999999865321 122233445566778888888888876654
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.3e-28 Score=259.41 Aligned_cols=258 Identities=21% Similarity=0.174 Sum_probs=131.0
Q ss_pred CCCCCCCcC---CCCCCCCcccceeEecC--------CCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEe
Q 047035 12 ADEILTSWV---DDGISDCCDWERVTCDA--------TAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILD 80 (783)
Q Consensus 12 ~~~~~~~W~---~~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 80 (783)
+.+.+++|. .. ..++|.|.|+.|.. ...+|+.++++++.+. .+. ..+..+++|++|+
T Consensus 43 ~~~~~~~w~~~~~~-~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----------~lp-~~l~~l~~L~~L~ 110 (328)
T 4fcg_A 43 RNRWHSAWRQANSN-NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----------QFP-DQAFRLSHLQHMT 110 (328)
T ss_dssp CTTHHHHHHHHTTT-CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----------SCC-SCGGGGTTCSEEE
T ss_pred chhhhhhhcccccc-cccccccCCcchhhhHHHHhcccccceeEEEccCCCch----------hcC-hhhhhCCCCCEEE
Confidence 345567884 22 36799999999952 2345566666555441 111 2244455666666
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCC
Q 047035 81 LSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSW 160 (783)
Q Consensus 81 Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~ 160 (783)
|++|.++ .+| ..++.+++|++|+|++|.++ .+|..++.+++|++|++++|++.+.+|. .+.. ..+
T Consensus 111 L~~n~l~-~lp----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~------~~~-- 175 (328)
T 4fcg_A 111 IDAAGLM-ELP----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS------TDA-- 175 (328)
T ss_dssp EESSCCC-CCC----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE------EC---
T ss_pred CCCCCcc-chh----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh------ccc--
Confidence 6655555 333 44555555666666665555 4455555556666666655555554443 2222 000
Q ss_pred CCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccC
Q 047035 161 NGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQL 240 (783)
Q Consensus 161 n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 240 (783)
...++++++|++|++++|+++..+..++.+++|++|++++|.+++ ++ ..+..+++|++|++++|.+.+.+
T Consensus 176 --------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~-~~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 176 --------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LG-PAIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp --------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CC-GGGGGCTTCCEEECTTCTTCCBC
T ss_pred --------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cc-hhhccCCCCCEEECcCCcchhhh
Confidence 001222445555555555444333344445555555555555442 33 23445555555555555555555
Q ss_pred CccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccceecChhhhcCCCCCcEEEeccC
Q 047035 241 PWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQGEFPLSLLTNHSNLEVLLLKVS 307 (783)
Q Consensus 241 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~l~~l~~L~~L~l~~~ 307 (783)
|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.+.+..+
T Consensus 246 p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 246 PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGG
T ss_pred HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHH
Confidence 55555555555555555555555555555555555555555555555553 2445555555554433
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.1e-30 Score=297.94 Aligned_cols=410 Identities=17% Similarity=0.076 Sum_probs=253.5
Q ss_pred ccccCCCCCCEEeCCCCCCC---CCCCCCCC--------cccCCCCCCCEEeCCCCCCCCCCcccccC-CC-CCCEEEcc
Q 047035 68 SLFLPFQELQILDLSGNYFD---GWNENKDY--------DSSGSSKKLKILNLNYNNFNDSVLPYLNT-LT-SLTTLNLY 134 (783)
Q Consensus 68 ~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~--------~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~-l~-~L~~L~Ls 134 (783)
..+..+++|++|+++++... +..+.... .....+++|++|+|++|.+++..+..++. ++ +|++|+|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 45678999999999875321 12221000 01127899999999999988766776765 44 49999999
Q ss_pred CCc-CCCCCCchhccCCCCCCeEeCCCCCCCCCcCc---cccCCCCCCCEEECcCCcCccc----CC-CcCCCCCCCEEE
Q 047035 135 YNR-IGGLNPSQGLANLRNLKALNLSWNGISSGATR---LGLGNLTNLEVLDLSANRISGS----LT-ELAPFRNLKVLG 205 (783)
Q Consensus 135 ~n~-l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~Ls~n~~~~~----~~-~l~~l~~L~~L~ 205 (783)
+|. +..........++++|++|++++|.+.+.... ..+..+++|++|++++|.+++. .+ .+..+++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 986 22110111235889999999999987665321 2345789999999999998732 22 456789999999
Q ss_pred ccCccCcccCCcccccCCCCCcEEEccCcccc---ccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCC
Q 047035 206 MRNNLLNGSVESKGICELKNLTELDLGENNLE---GQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282 (783)
Q Consensus 206 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 282 (783)
+++|.+.+ ++ ..+..+++|++|+++..... ...+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|
T Consensus 227 L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 227 VGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp CSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTC
T ss_pred ccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCC
Confidence 99998874 45 67888999999999864332 23455678889999999988644 367888888999999999999
Q ss_pred ccceecChhhhcCCCCCcEEEeccCcccccCCC-CCCCCccccEEeCCC-----------CCCC--ccChhhhcCCCCCE
Q 047035 283 NFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTE-NWIPTFQLKVLQLPN-----------CNLK--VIPSFLLHQYDFKF 348 (783)
Q Consensus 283 ~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~L~~-----------~~l~--~ip~~l~~~~~L~~ 348 (783)
.+.+......+..+++|++|+++.+ +...... ....+++|++|++++ +.++ .++.....+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 8765544455788999999998732 2111111 112345677777763 3444 23333445666777
Q ss_pred EEccCCcccCCCChhhhhcCCCCcEEEcc----CccccCccc-----CCccCCCCccEEEcccCc--CCCCCChhhhhhc
Q 047035 349 LDLSSNKLVGNFPTWLMQNNTKLEVLRLS----NNSFSGILQ-----LPKVKHDLLRHLDISNNN--LTGMLPQNMGIVI 417 (783)
Q Consensus 349 L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~----~n~l~~~~~-----~~~~~~~~L~~L~L~~n~--l~~~~p~~~~~~l 417 (783)
|+++.+.+++..+..+...+++|++|+++ .|.+++.+. .....+++|++|+++.|. +++..+..++..+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 77666666655555555446666666664 334443210 001335555555554332 3333333333334
Q ss_pred CCceEEeCCCCcccc-cCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035 418 QKLMYIDISKNNFEG-NIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481 (783)
Q Consensus 418 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 481 (783)
++|++|++++|++++ .++..+..+++|++|++++|.+++.........+++|++|++++|++++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 555555555555543 2223334455555555555554433222333345555555555555443
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.3e-29 Score=291.19 Aligned_cols=328 Identities=12% Similarity=0.064 Sum_probs=158.0
Q ss_pred CccccEEeCCCCCCC-----ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcccc---CcccCCccC
Q 047035 320 TFQLKVLQLPNCNLK-----VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFS---GILQLPKVK 391 (783)
Q Consensus 320 ~~~L~~L~L~~~~l~-----~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~ 391 (783)
+++|++|++++|.++ .++..+..+++|+.|++++|.+.+ +|..+ ..+++|++|+++..... .........
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH-hhhhHHHhhcccccccccchHHHHHHhhc
Confidence 344555555555554 334455567777777777777664 45433 36677777777653221 011112244
Q ss_pred CCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCC-ccccCCCCCCeeeccCCcCccccChhhhhcCCCCc
Q 047035 392 HDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP-YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLE 470 (783)
Q Consensus 392 ~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 470 (783)
+++|+.++++++.. +.+|..+ ..+++|++|++++|.+++... ..+..+++|+.|+++ +.+...........+++|+
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCccccch-hHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 55666666655422 2333333 245556666665555443222 223455555555555 2222222222233455555
Q ss_pred EEECcC---ccccccCCCcccCCCCccEEEccCcccccc-cccccccCCCCcEEEccCCcccccCCCCcCC-CCCCcEEE
Q 047035 471 YLDVSE---NNFYGHIFPTYMNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVVLDISNNLLSGHIPCWIGN-FSYLDVLL 545 (783)
Q Consensus 471 ~L~L~~---n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ 545 (783)
+|++++ +...... .+.+++. ++.....+++|++|+++.|.+++..+..++. +++|+.|+
T Consensus 346 ~L~L~~g~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~ 409 (592)
T 3ogk_B 346 RLRIERGADEQGMEDE----------------EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409 (592)
T ss_dssp EEEEECCCCSSTTSST----------------TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEE
T ss_pred EEEeecCccccccccc----------------cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEE
Confidence 555552 0000000 1222221 1111223444555555444444433333333 44555555
Q ss_pred CC----CCccccc-----CcccccCCCCCCEEeCCCcc--ccccccccc--CcCCCcEEEccCCcccc-cCchhhhcCCC
Q 047035 546 MS----KNHLEGN-----IPVQINNFRQLQLLDLSENR--LFGSIASSL--NLSSIMHLYLQNNALSG-QIPSTLFRSTE 611 (783)
Q Consensus 546 L~----~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~--~l~~L~~L~L~~n~l~~-~~p~~l~~l~~ 611 (783)
++ .|.+++. ++..+..+++|++|++++|. +++..+..+ .+++|++|++++|++++ .++..+..+++
T Consensus 410 l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489 (592)
T ss_dssp EEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTT
T ss_pred EeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcc
Confidence 53 3444432 23334456666666665433 444333333 45666666666666654 23444456666
Q ss_pred CcEEECcCCccccC-CchhccCCcCCCEEeCcCCcccccCCcch-hCCCCCCEEecCCC
Q 047035 612 LLTLDLRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIPIAL-CQLQKLGILDLSHN 668 (783)
Q Consensus 612 L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~N 668 (783)
|+.|++++|++++. ++..+..+++|+.|++++|++++.-...+ ..++.+....+..+
T Consensus 490 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 77777777766543 33334556677777777777664422222 24555555544443
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.4e-27 Score=251.60 Aligned_cols=200 Identities=19% Similarity=0.243 Sum_probs=99.3
Q ss_pred CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcC---------
Q 047035 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIG--------- 536 (783)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~--------- 536 (783)
+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 333333333333333 23333333444444444444443 3333344444444444444444444443332
Q ss_pred CCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035 537 NFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615 (783)
Q Consensus 537 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 615 (783)
++++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+ .+++|++|++++|++.+.+|..+.++++|+.|
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 3555555555555555 455555555555555555555553 22223 45555555555555555555555555555555
Q ss_pred ECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035 616 DLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669 (783)
Q Consensus 616 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 669 (783)
++++|++.+.+|.++..+++|+.|+|++|++.+.+|..++++++|+.+++..+.
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 555555555555555555555555555555555555555555555555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=255.10 Aligned_cols=278 Identities=21% Similarity=0.211 Sum_probs=221.2
Q ss_pred CCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCee
Q 047035 368 NTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLL 447 (783)
Q Consensus 368 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 447 (783)
|+.....+++++.++.++ ..-.++|++|++++|++++ +|...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP---~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP---SGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCC---TTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCccccc---ccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344444555666555542 2223567788888887774 444333468888999999998888778888899999999
Q ss_pred eccCCcCccccChhhhhcCCCCcEEECcCccccccCC-CcccCCCCccEEEccCc-ccccccccccccCCCCcEEEccCC
Q 047035 448 DLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIF-PTYMNLTQLRWLYLKNN-HFTGKIKAGLLNSHGLVVLDISNN 525 (783)
Q Consensus 448 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~n 525 (783)
++++|+++ .++...+..+++|++|++++|++.+... ..+..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999988 6777777889999999999999886444 47888999999999998 466666778889999999999999
Q ss_pred cccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc----CcCCCcEEEccCCcccc-
Q 047035 526 LLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL----NLSSIMHLYLQNNALSG- 600 (783)
Q Consensus 526 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~l~~L~~L~L~~n~l~~- 600 (783)
.+.+..|..++.+++|++|++++|++....+..+..+++|++|++++|++.+..+..+ ..+.++.++++++.+++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 9998889999999999999999999874444445568999999999999987655443 46778899999988876
Q ss_pred ---cCchhhhcCCCCcEEECcCCccccCCchh-ccCCcCCCEEeCcCCcccccCC
Q 047035 601 ---QIPSTLFRSTELLTLDLRDNKFFGRIPDQ-INNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 601 ---~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p 651 (783)
.+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 47888999999999999999998 56666 5899999999999999997655
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.2e-27 Score=244.38 Aligned_cols=237 Identities=20% Similarity=0.156 Sum_probs=125.7
Q ss_pred CCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEE
Q 047035 443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLD 521 (783)
Q Consensus 443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~ 521 (783)
+|+.|++++|.++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3344444444433 2222233344444444444444444334444444445555555544 4333344455555555555
Q ss_pred ccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccc
Q 047035 522 ISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSG 600 (783)
Q Consensus 522 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~ 600 (783)
+++|.+.+..|..+.++++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555555555555555555555555555554444445555566666666665554444444 55666666666666665
Q ss_pred cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035 601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 601 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 680 (783)
..|..+.++++|+.|++++|++.+..|..+..+++|+.|++++|++....+.. .-...++.++.+.+.+.+..|..+..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 55666666666666666666666655555666666666666666666443321 11122334445666677777766654
Q ss_pred c
Q 047035 681 M 681 (783)
Q Consensus 681 ~ 681 (783)
.
T Consensus 271 ~ 271 (285)
T 1ozn_A 271 R 271 (285)
T ss_dssp C
T ss_pred c
Confidence 3
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.2e-26 Score=254.44 Aligned_cols=249 Identities=19% Similarity=0.195 Sum_probs=137.0
Q ss_pred ccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEEC
Q 047035 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDV 474 (783)
Q Consensus 395 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 474 (783)
.+.++.++..++ .+|..+ .+++++|++++|.+++..|..|.++++|+.|++++|.++ .++...+.++++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 345666666665 555543 245666666666666655666666666666666666665 333334455555666666
Q ss_pred cCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc
Q 047035 475 SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN 554 (783)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 554 (783)
++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---------------------- 188 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---------------------- 188 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC----------------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC----------------------
Confidence 6555555444445555555555555555554444445555555555555432221222
Q ss_pred CcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCc
Q 047035 555 IPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634 (783)
Q Consensus 555 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 634 (783)
+..|..+++|++|++++|++.+ +|....+++|++|+|++|.+++..|..|.++++|+.|++++|++.+..|..+..++
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -hhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 2234445555555555555542 23322555555555555555555555666666666666666666655566666666
Q ss_pred CCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 635 ELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 635 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
+|+.|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 66666666666665555555666666666666666543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=254.28 Aligned_cols=246 Identities=20% Similarity=0.223 Sum_probs=147.0
Q ss_pred ccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEEC
Q 047035 395 LRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDV 474 (783)
Q Consensus 395 L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 474 (783)
.+.++..+..++ .+|..+. ++++.|++++|++.+..+..|.++++|+.|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 456777777776 6776553 56777888888777766677777777777777777776 455555667777777777
Q ss_pred cCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCc-ccccCCCCcCCCCCCcEEECCCCcccc
Q 047035 475 SENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNL-LSGHIPCWIGNFSYLDVLLMSKNHLEG 553 (783)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~ 553 (783)
++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|. +....+..|.++++|++|++++|+++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 7777766555566667777777777777665555566666666666666643 33333335556666666666666655
Q ss_pred cCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccC
Q 047035 554 NIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINN 632 (783)
Q Consensus 554 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 632 (783)
.+| .+..+++|++|+|++|++++..|..+ .+++|++|++++|++++..|..|.++++|+.|+|++|++++..+..+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 333 24555555555555555554444444 4455555555555554444444444455555555555544444444444
Q ss_pred CcCCCEEeCcCCccc
Q 047035 633 HSELRVLLLRGNYLQ 647 (783)
Q Consensus 633 l~~L~~L~L~~N~l~ 647 (783)
+++|+.|+|++|.+.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 444444444444443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.2e-27 Score=241.31 Aligned_cols=227 Identities=21% Similarity=0.194 Sum_probs=144.2
Q ss_pred CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccC
Q 047035 445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISN 524 (783)
Q Consensus 445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~ 524 (783)
+.++.+++.++ .+|... .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555554 444422 34666666666666665555666666666666666666665566666666666666666
Q ss_pred Cc-ccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccC
Q 047035 525 NL-LSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQI 602 (783)
Q Consensus 525 n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~ 602 (783)
|. +....|..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+..+ .+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 555556666666666666666666666656666666666666666666665555445 5666666666666666555
Q ss_pred chhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 603 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
+..+..+++|+.|++++|++.+..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 5556666666666666666666666666666666666666666665555556666666666666666665444
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-28 Score=255.73 Aligned_cols=246 Identities=21% Similarity=0.214 Sum_probs=198.8
Q ss_pred cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCc-cccChhhh------hcCCCCcEEECcCccccccCCCcc--
Q 047035 417 IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFS-GDLSATSV------IRCASLEYLDVSENNFYGHIFPTY-- 487 (783)
Q Consensus 417 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~-- 487 (783)
.++|+++++++|.+ .+|..+... |+.|++++|.+. +.++.... ..+++|++|++++|++.+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45566777777777 556555443 777777777773 34444331 257889999999999888888776
Q ss_pred cCCCCccEEEccCcccccccccccccC-----CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc--Ccccc-
Q 047035 488 MNLTQLRWLYLKNNHFTGKIKAGLLNS-----HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--IPVQI- 559 (783)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~~~~~~l~~~-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~- 559 (783)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..|..++++++|++|++++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7889999999999999876 7777766 8999999999999988889999999999999999998765 34444
Q ss_pred -cCCCCCCEEeCCCccccc--ccccc-c-CcCCCcEEEccCCcccccCc-hhhhcCCCCcEEECcCCccccCCchhccCC
Q 047035 560 -NNFRQLQLLDLSENRLFG--SIASS-L-NLSSIMHLYLQNNALSGQIP-STLFRSTELLTLDLRDNKFFGRIPDQINNH 633 (783)
Q Consensus 560 -~~l~~L~~L~Ls~N~l~~--~~p~~-~-~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 633 (783)
..+++|++|++++|++.+ .++.. + .+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|.++.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 889999999999999983 33333 3 77999999999999998775 45667899999999999997 7888877
Q ss_pred cCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 634 SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 634 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
++|+.|++++|++++. |. +..+++|+.|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999966 66 8999999999999999986
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.6e-28 Score=256.39 Aligned_cols=267 Identities=18% Similarity=0.186 Sum_probs=203.8
Q ss_pred cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECc
Q 047035 396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS 475 (783)
Q Consensus 396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 475 (783)
+..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 13 ~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred eEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence 34444555443 3334444456678888888888887666778888888888888888875443 5677888888888
Q ss_pred CccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC
Q 047035 476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI 555 (783)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 555 (783)
+|++++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..++.+++|++|++++|++++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 88877532 3378888888888887655543 577888899988888877878888888999999999888777
Q ss_pred ccccc-CCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCc
Q 047035 556 PVQIN-NFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS 634 (783)
Q Consensus 556 p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 634 (783)
+..+. .+++|++|++++|++++. +....+++|++|++++|++++ +|..+..+++|+.|++++|++. .+|..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 76663 678899999999988755 444468888999999998884 4555888889999999999887 4677888888
Q ss_pred CCCEEeCcCCccc-ccCCcchhCCCCCCEEecC-CCcCcccCCcc
Q 047035 635 ELRVLLLRGNYLQ-GQIPIALCQLQKLGILDLS-HNKLNGSIPSC 677 (783)
Q Consensus 635 ~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~iP~~ 677 (783)
+|+.|++++|++. +.+|..+..++.|+.++++ .+.+.|..|..
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 9999999999888 7778888888888888888 44566666553
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1e-25 Score=248.29 Aligned_cols=245 Identities=21% Similarity=0.177 Sum_probs=116.1
Q ss_pred EEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035 422 YIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501 (783)
Q Consensus 422 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (783)
.++..+..++ .+|..+. ++++.|++++|++. .++...+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 47 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 47 KVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 4444444444 3343332 34455555555544 233333444555555555555554444444445555555555555
Q ss_pred ccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccC-cccccCCCCCCEEeCCCcccccccc
Q 047035 502 HFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNI-PVQINNFRQLQLLDLSENRLFGSIA 580 (783)
Q Consensus 502 ~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p 580 (783)
.++...+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|+..+.+ +..|.++++|++|++++|++. .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 554443444444555555555555555444444455555555555543222222 223444555555555555444 233
Q ss_pred cccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCC
Q 047035 581 SSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKL 660 (783)
Q Consensus 581 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 660 (783)
....+++|++|+|++|++++..|..|.++++|+.|+|++|++.+..|..|.++++|+.|+|++|++++..+..+..+++|
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 32244555555555555554444455555555555555555544444445555555555555555554444444445555
Q ss_pred CEEecCCCcCc
Q 047035 661 GILDLSHNKLN 671 (783)
Q Consensus 661 ~~L~ls~N~l~ 671 (783)
+.|+|++|++.
T Consensus 282 ~~L~L~~Np~~ 292 (440)
T 3zyj_A 282 ERIHLHHNPWN 292 (440)
T ss_dssp CEEECCSSCEE
T ss_pred CEEEcCCCCcc
Confidence 55555555543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.1e-25 Score=248.76 Aligned_cols=249 Identities=16% Similarity=0.150 Sum_probs=214.5
Q ss_pred CCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeec
Q 047035 370 KLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDL 449 (783)
Q Consensus 370 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 449 (783)
....++.++..++.+ |..-.+++++|++++|++++..|..+ ..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~i---P~~~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV---PQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSC---CSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCcc---CCCCCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 456788888887765 33345789999999999996656655 47999999999999999888899999999999999
Q ss_pred cCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEEccCCccc
Q 047035 450 SRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLDISNNLLS 528 (783)
Q Consensus 450 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~Ls~n~l~ 528 (783)
++|+++ .++...+..+++|++|++++|++....+..|..+++|++|++++|. +....+..|..+++|++|++++|.++
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999998 6777778899999999999999998777789999999999999954 44444456889999999999999998
Q ss_pred ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhh
Q 047035 529 GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLF 607 (783)
Q Consensus 529 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~ 607 (783)
+. | .+..+++|+.|++++|++++..|..|.++++|+.|++++|++.+..|..+ .+++|++|+|++|++++..+..+.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 54 4 58889999999999999998889999999999999999999998888777 888999999999999877777788
Q ss_pred cCCCCcEEECcCCccccC
Q 047035 608 RSTELLTLDLRDNKFFGR 625 (783)
Q Consensus 608 ~l~~L~~L~Ls~N~l~~~ 625 (783)
.+++|+.|+|++|.+...
T Consensus 288 ~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp TCTTCCEEECCSSCEECS
T ss_pred cccCCCEEEccCCCcCCC
Confidence 888999999999887543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.1e-27 Score=250.96 Aligned_cols=248 Identities=21% Similarity=0.183 Sum_probs=203.0
Q ss_pred cCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcc-cccCCcccc-------CCCCCCeeeccCCcCccccChh
Q 047035 390 VKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNF-EGNIPYSIG-------EMKELFLLDLSRNKFSGDLSAT 461 (783)
Q Consensus 390 ~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~i~~~ 461 (783)
...++|+++++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|++++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456688888888888 778776532 88888888888 445666555 6889999999999998888876
Q ss_pred hh-hcCCCCcEEECcCccccccCCCcccCC-----CCccEEEccCcccccccccccccCCCCcEEEccCCccccc--CCC
Q 047035 462 SV-IRCASLEYLDVSENNFYGHIFPTYMNL-----TQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH--IPC 533 (783)
Q Consensus 462 ~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~--~p~ 533 (783)
++ ..+++|++|++++|++++. |..+..+ ++|++|++++|.+++..+..+..+++|++|++++|++.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 53 7788999999999999886 6766666 8999999999999888888899999999999999997764 233
Q ss_pred Cc--CCCCCCcEEECCCCcccc--cCc-ccccCCCCCCEEeCCCccccccccc-cc-CcCCCcEEEccCCcccccCchhh
Q 047035 534 WI--GNFSYLDVLLMSKNHLEG--NIP-VQINNFRQLQLLDLSENRLFGSIAS-SL-NLSSIMHLYLQNNALSGQIPSTL 606 (783)
Q Consensus 534 ~l--~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~-~l~~L~~L~L~~n~l~~~~p~~l 606 (783)
.+ +.+++|++|++++|++++ .++ ..+..+++|++|++++|++.+.+|. .+ .+++|++|++++|+++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 788999999999999983 222 3446789999999999999987753 33 7899999999999998 788877
Q ss_pred hcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 607 FRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 607 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
. ++|++||+++|++++. |. +..+++|+.|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 8999999999999876 76 8899999999999999985
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.7e-25 Score=248.48 Aligned_cols=268 Identities=25% Similarity=0.268 Sum_probs=174.8
Q ss_pred CcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeecc
Q 047035 371 LEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLS 450 (783)
Q Consensus 371 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 450 (783)
++.|++++|.++.++ ..-.++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~~lp---~~l~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLTTLP---DCLPAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCSCCC---SCCCTTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcCccC---hhhCCCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 444444444444321 111145555555555554 3443 2455666666666655 3443 45566666666
Q ss_pred CCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCccccc
Q 047035 451 RNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGH 530 (783)
Q Consensus 451 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~ 530 (783)
+|.++ .+|. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 66665 3333 34566666666666654 3332 3666777777776664 332 23567777777777774
Q ss_pred CCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCC
Q 047035 531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRST 610 (783)
Q Consensus 531 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 610 (783)
+| ..+++|+.|++++|++++ +|.. .++|+.|++++|.+. .+|.. +++|++|++++|++++ +| ..++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~--~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--PSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC--CCCCCEEEccCCccCc-CC---CCCC
Confidence 44 345677777777777774 4432 367788888888776 34432 4778888888888874 66 4557
Q ss_pred CCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhccc
Q 047035 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLF 683 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 683 (783)
+|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|+++|.+|..+.+++.
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 8899999999887 4665 5688999999999998 77888999999999999999999999998887763
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.8e-29 Score=290.28 Aligned_cols=432 Identities=18% Similarity=0.117 Sum_probs=259.8
Q ss_pred ccccCCCCCCEEeCCCCCCCC---CCCCCC--------CcccCCCCCCCEEeCCCCCCCCCCccccc-CCCCCCEEEccC
Q 047035 68 SLFLPFQELQILDLSGNYFDG---WNENKD--------YDSSGSSKKLKILNLNYNNFNDSVLPYLN-TLTSLTTLNLYY 135 (783)
Q Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~---~~~~~~--------~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~Ls~ 135 (783)
..+..+++|++|+++++.... ..+..+ ......+++|++|+|++|.+++..+..+. .+++|++|+|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 456789999999999875211 111000 01123678999999999988876666665 689999999998
Q ss_pred C-cCCCCCCchhccCCCCCCeEeCCCCCCCCCcCc---cccCCCCCCCEEECcCCc--Ccc-cCC-CcCCCCCCCEEEcc
Q 047035 136 N-RIGGLNPSQGLANLRNLKALNLSWNGISSGATR---LGLGNLTNLEVLDLSANR--ISG-SLT-ELAPFRNLKVLGMR 207 (783)
Q Consensus 136 n-~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~---~~l~~l~~L~~L~Ls~n~--~~~-~~~-~l~~l~~L~~L~L~ 207 (783)
| .+++......+.++++|++|++++|.+++.... .....+++|++|++++|. +.. ... .+..+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 444321122345789999999999987664431 123367899999999886 221 111 23457889999998
Q ss_pred CccCcccCCcccccCCCCCcEEEccCcc-------ccccCCccccCCCCCCEE-EcccccCCccCchhhcCCCCCCEEeC
Q 047035 208 NNLLNGSVESKGICELKNLTELDLGENN-------LEGQLPWCLSDLIGLKVL-DISFNHLSGNLPSVIANLTSLEYLAL 279 (783)
Q Consensus 208 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L 279 (783)
+|...+.++ ..+..+++|++|+++.+. +.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++
T Consensus 220 ~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 220 RAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp TTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEEC
T ss_pred CCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEc
Confidence 884333344 567778889999865543 332 34467788888888 4443322 345555567888888888
Q ss_pred cCCccceecChhhhcCCCCCcEEEeccCcccccCCCCCCCCccccEEeCCCCCCCccChhhhcCCCCCEEEccC------
Q 047035 280 SDNNFQGEFPLSLLTNHSNLEVLLLKVSSNLRLKTENWIPTFQLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSS------ 353 (783)
Q Consensus 280 ~~n~l~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~------ 353 (783)
++|.+.+......+..+++|++|++++| .... .++.....+++|++|++++
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~----------------------~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA----------------------GLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH----------------------HHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH----------------------HHHHHHHhCCCCCEEEEecCccccc
Confidence 8888664444444667888888887765 2111 1111222344444444422
Q ss_pred ---CcccCCCChhhhhcCCCCcEEEccCccccCcccCCc-cCCCCccEEEcc--c----CcCCCCCCh-----hhhhhcC
Q 047035 354 ---NKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPK-VKHDLLRHLDIS--N----NNLTGMLPQ-----NMGIVIQ 418 (783)
Q Consensus 354 ---n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~--~----n~l~~~~p~-----~~~~~l~ 418 (783)
+.+++.....+...+++|++|.+..+.+++...... ..+++|++|+++ + +.++ ..|. .+...++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~ 432 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK 432 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC
Confidence 222222222222335555555555555443221111 235556666665 2 2333 1221 1234567
Q ss_pred CceEEeCCCCcccccCCccccC-CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCC-cccCCCCccEE
Q 047035 419 KLMYIDISKNNFEGNIPYSIGE-MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFP-TYMNLTQLRWL 496 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L 496 (783)
+|++|++++ .+++..+..+.. +++|+.|++++|.+++.........+++|++|++++|.+++.... ....+++|++|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 788888866 555444444443 777888888888876544444446678888888888887543333 33457888888
Q ss_pred EccCccccccccccc-ccCCCCcEEEccCCcc
Q 047035 497 YLKNNHFTGKIKAGL-LNSHGLVVLDISNNLL 527 (783)
Q Consensus 497 ~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l 527 (783)
++++|+++......+ ..++.|+...+..+..
T Consensus 512 ~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 512 WMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp EEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred eeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 888888754433334 4567777666665543
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=241.86 Aligned_cols=249 Identities=23% Similarity=0.211 Sum_probs=214.4
Q ss_pred CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 498 (783)
+++..+++.+.+....+..+..+++|++|++++|+++ .++...+..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4667788888877555556677889999999999998 4666667899999999999999987554 889999999999
Q ss_pred cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578 (783)
Q Consensus 499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 578 (783)
++|.+++.. ..++|++|++++|.+.+..+.. +++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999998533 3489999999999999776554 67899999999999988888999999999999999999987
Q ss_pred ccccc--CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035 579 IASSL--NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ 656 (783)
Q Consensus 579 ~p~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 656 (783)
.+..+ .+++|++|++++|.+++. |. ...+++|++|++++|++.+. |..+..+++|+.|++++|+++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 77766 689999999999999855 43 34589999999999999864 556999999999999999999 57888999
Q ss_pred CCCCCEEecCCCcCc-ccCCcchhhcc
Q 047035 657 LQKLGILDLSHNKLN-GSIPSCFVNML 682 (783)
Q Consensus 657 l~~L~~L~ls~N~l~-g~iP~~~~~~~ 682 (783)
+++|+.|++++|+++ +.+|..++.+.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccc
Confidence 999999999999999 77888777664
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-26 Score=255.66 Aligned_cols=235 Identities=19% Similarity=0.185 Sum_probs=175.0
Q ss_pred CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEE
Q 047035 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY 497 (783)
Q Consensus 418 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (783)
++|++|++++|.+++..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 467777777777776666777777777777777777775444 567777888888887776532 236778888
Q ss_pred ccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc-CCCCCCEEeCCCcccc
Q 047035 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN-NFRQLQLLDLSENRLF 576 (783)
Q Consensus 498 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 576 (783)
+++|.+++..+.. +++|+.|++++|.+++..|..++.+++|+.|++++|.+++.+|..+. .+++|++|+|++|.++
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888877655543 46788888888888877777788888888888888888877777775 6788888888888887
Q ss_pred cccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc-ccCCcchh
Q 047035 577 GSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ-GQIPIALC 655 (783)
Q Consensus 577 ~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~l~ 655 (783)
+. |....+++|+.|+|++|.+++. |..+..+++|+.|+|++|.+++ +|.++..+++|+.|++++|.+. +.+|..+.
T Consensus 183 ~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DV-KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE-ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc-cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 65 3333677888888888888754 4447778888888888888875 6777777888888888888877 66677777
Q ss_pred CCCCCCEEecC
Q 047035 656 QLQKLGILDLS 666 (783)
Q Consensus 656 ~l~~L~~L~ls 666 (783)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77777777775
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1e-24 Score=247.07 Aligned_cols=268 Identities=26% Similarity=0.341 Sum_probs=147.4
Q ss_pred cccEEeCCCCCCCccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcc
Q 047035 322 QLKVLQLPNCNLKVIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDIS 401 (783)
Q Consensus 322 ~L~~L~L~~~~l~~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 401 (783)
+++.|++++|.++.+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~------------------ 95 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS------------------ 95 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC------------------
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc------------------
Confidence 35566666666665555433 45555555555554 3333 23455555555555443
Q ss_pred cCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccc
Q 047035 402 NNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYG 481 (783)
Q Consensus 402 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 481 (783)
+|. .+++|++|++++|.+++ +|. .+++|+.|++++|+++ .+|. .+++|++|++++|++++
T Consensus 96 -------lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 96 -------LPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS 155 (622)
T ss_dssp -------CCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred -------CCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC
Confidence 333 23445555555554442 222 3344555555555554 2332 12455555555555543
Q ss_pred cCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccC
Q 047035 482 HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINN 561 (783)
Q Consensus 482 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 561 (783)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..
T Consensus 156 -l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~--- 219 (622)
T 3g06_A 156 -LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--- 219 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---
T ss_pred -cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---
Confidence 222 23455556666665553 33 234566666666666653 3322 355666666666665 33432
Q ss_pred CCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035 562 FRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL 641 (783)
Q Consensus 562 l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 641 (783)
+++|+.|++++|++++ +| ..+++|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 3566667777766664 34 23466777777777766 4554 4566777777777776 56777777777777777
Q ss_pred cCCcccccCCcchhCCC
Q 047035 642 RGNYLQGQIPIALCQLQ 658 (783)
Q Consensus 642 ~~N~l~~~~p~~l~~l~ 658 (783)
++|++++.+|..+..++
T Consensus 292 ~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 292 EGNPLSERTLQALREIT 308 (622)
T ss_dssp CSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcc
Confidence 77777777766655443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.2e-28 Score=276.96 Aligned_cols=331 Identities=15% Similarity=0.096 Sum_probs=172.5
Q ss_pred CccccEEeCCCCC--CC--ccChhhhcCCCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCcc-------ccCcccCC
Q 047035 320 TFQLKVLQLPNCN--LK--VIPSFLLHQYDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNS-------FSGILQLP 388 (783)
Q Consensus 320 ~~~L~~L~L~~~~--l~--~ip~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 388 (783)
+++|++|++++|. +. .++.....+++|++|++++|...+.++..+ ..+++|++|++..+. +.+... .
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL-QRAPQLEELGTGGYTAEVRPDVYSGLSV-A 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH-HHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH-hcCCcceEcccccccCccchhhHHHHHH-H
Confidence 3456666666654 22 223334456777777777773322344433 366777777754432 222111 1
Q ss_pred ccCCCCccEE-EcccCcCCCCCChhhhhhcCCceEEeCCCCcccccC-CccccCCCCCCeeeccCCcCccccChhhhhcC
Q 047035 389 KVKHDLLRHL-DISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNI-PYSIGEMKELFLLDLSRNKFSGDLSATSVIRC 466 (783)
Q Consensus 389 ~~~~~~L~~L-~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l 466 (783)
+..+++|+.+ .+..... +.++..+ ..+++|++|++++|.+++.. +..+..+++|+.|++++| +...........+
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~-~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGH-HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HhcCCCcccccCCcccch-hhHHHHH-HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 2345555555 2222111 1222222 23455555555555544321 112334555555555555 2211111222234
Q ss_pred CCCcEEECcCccccccCCCcccCCCCccEEEccCccccccccccc-ccCCCCcEEEccCCcccccCCCCcC-CCCCCcEE
Q 047035 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLSGHIPCWIG-NFSYLDVL 544 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L 544 (783)
++|++|++.++.-.| ....+.+++.....+ ..+++|+.|+++.|.+++..+..+. .+++|+.|
T Consensus 338 ~~L~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 338 KDLRELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp TTCCEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 555555553211000 001122222211112 1245555555555555543333333 35556666
Q ss_pred ECC--C----Ccccc-----cCcccccCCCCCCEEeCCCccccccccccc--CcCCCcEEEccCCcccccCchhh-hcCC
Q 047035 545 LMS--K----NHLEG-----NIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNNALSGQIPSTL-FRST 610 (783)
Q Consensus 545 ~L~--~----n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~l-~~l~ 610 (783)
+++ + +.+++ .++..+..+++|++|++++ .+++..+..+ .+++|++|+|++|.+++..+..+ ..++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 665 2 33431 1222356677888888876 5555444444 37888899998888876655555 6788
Q ss_pred CCcEEECcCCccccCCch-hccCCcCCCEEeCcCCcccccCCcch-hCCCCCCEEecCCCcCc
Q 047035 611 ELLTLDLRDNKFFGRIPD-QINNHSELRVLLLRGNYLQGQIPIAL-CQLQKLGILDLSHNKLN 671 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~ls~N~l~ 671 (783)
+|+.|+|++|++++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+...
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 999999999998654443 44568899999999998865444444 56788877777766543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=247.94 Aligned_cols=229 Identities=26% Similarity=0.220 Sum_probs=200.8
Q ss_pred cCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCc
Q 047035 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518 (783)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 518 (783)
..+++|+.|++++|.+++ ++...+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred ccCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 355689999999999985 555567899999999999999988665 8899999999999999986433 38999
Q ss_pred EEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc--CcCCCcEEEccCC
Q 047035 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL--NLSSIMHLYLQNN 596 (783)
Q Consensus 519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~l~~L~~L~L~~n 596 (783)
.|++++|.+.+..+.. +++|+.|++++|.+++..|..++.+++|++|++++|.+++.+|..+ .+++|++|+|++|
T Consensus 103 ~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9999999999876653 5789999999999999999999999999999999999999888777 6899999999999
Q ss_pred cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCc-ccCC
Q 047035 597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLN-GSIP 675 (783)
Q Consensus 597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~iP 675 (783)
.+++..+ ...+++|+.|+|++|++++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9996633 3468999999999999987554 58899999999999999995 7888999999999999999998 7778
Q ss_pred cchhhcc
Q 047035 676 SCFVNML 682 (783)
Q Consensus 676 ~~~~~~~ 682 (783)
..+..+.
T Consensus 256 ~~~~~l~ 262 (487)
T 3oja_A 256 DFFSKNQ 262 (487)
T ss_dssp HHHTTCH
T ss_pred HHHHhCC
Confidence 7776654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.9e-24 Score=220.96 Aligned_cols=209 Identities=20% Similarity=0.180 Sum_probs=158.7
Q ss_pred CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 546 (783)
++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777766666655556666777777777777776666666777777777777777777766677777777777777
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCccccc-cccccc-CcCCCcEEEccCCcccccCchhhhcCCCCc----EEECcCC
Q 047035 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFG-SIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELL----TLDLRDN 620 (783)
Q Consensus 547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~N 620 (783)
++|++.+..+..+..+++|++|++++|++.+ .+|..+ .+++|++|++++|++++..+..+..++.|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 7777776666667777788888888887765 356666 778888888888888877777777777776 8999999
Q ss_pred ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
++.+..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 99866555544 45899999999999977666789999999999999999988763
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=8.4e-25 Score=224.18 Aligned_cols=226 Identities=17% Similarity=0.185 Sum_probs=175.7
Q ss_pred CCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035 444 LFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523 (783)
Q Consensus 444 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 523 (783)
+..+++..+.+..... ...+++|+.|++++|.+.. ...+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVT---QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSEEC---HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccccc---cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3444555555443322 2345667777777776654 23466677777777777777652 356777888888888
Q ss_pred CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccC
Q 047035 524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQI 602 (783)
Q Consensus 524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~ 602 (783)
+|.+++..+..++++++|++|++++|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 888887777777888888888888888887777778888888888888888887666666 7888899999999888777
Q ss_pred chhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035 603 PSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNML 682 (783)
Q Consensus 603 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 682 (783)
+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.||.+++++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 77788899999999999999988888889999999999999988754 45788999999999999999998775
Q ss_pred c
Q 047035 683 F 683 (783)
Q Consensus 683 ~ 683 (783)
.
T Consensus 247 ~ 247 (272)
T 3rfs_A 247 P 247 (272)
T ss_dssp G
T ss_pred C
Confidence 3
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.2e-23 Score=210.69 Aligned_cols=216 Identities=22% Similarity=0.255 Sum_probs=112.7
Q ss_pred CCCcccceeEecCCCCcEEEEEcCCCCcccccCCCCCCCccCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCC
Q 047035 25 SDCCDWERVTCDATAGQVIQLSLDFARMFDFYNSSDGFPILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKL 104 (783)
Q Consensus 25 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L 104 (783)
.++|.|.|+.|.- .+.++.+++++.++. .++. .+ .+++++|++++|.+++..+ ..+..+++|
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~----------~ip~-~~--~~~l~~L~l~~n~l~~~~~----~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT----------AIPS-NI--PADTKKLDLQSNKLSSLPS----KAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS----------SCCS-CC--CTTCSEEECCSSCCSCCCT----TSSSSCTTC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC----------ccCC-CC--CCCCCEEECcCCCCCeeCH----HHhcCCCCC
Confidence 4799999999863 123344555555431 0110 01 1345555555555544433 344455555
Q ss_pred CEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccCCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECc
Q 047035 105 KILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLANLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLS 184 (783)
Q Consensus 105 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls 184 (783)
++|+|++|.++...+..|..+++|++|++++|.+.+. .+ ..+..+++|++|+++
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-------------------------~~-~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-------------------------PI-GVFDQLVNLAELRLD 117 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-------------------------CT-TTTTTCSSCCEEECC
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-------------------------CH-hHcccccCCCEEECC
Confidence 5555555555443333444455555555555554443 32 134444555555555
Q ss_pred CCcCcccCC-CcCCCCCCCEEEccCccCcccCCcccccCCCCCcEEEccCccccccCCccccCCCCCCEEEcccccCCcc
Q 047035 185 ANRISGSLT-ELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTELDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGN 263 (783)
Q Consensus 185 ~n~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 263 (783)
+|.+++.++ .+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 555544443 3445555555555555554 23324455566666666666666554444566666666666666666654
Q ss_pred CchhhcCCCCCCEEeCcCCccc
Q 047035 264 LPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 264 ~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
.+..+..+++|++|++++|.+.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 4445666666666666666554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.4e-23 Score=215.97 Aligned_cols=205 Identities=23% Similarity=0.230 Sum_probs=113.5
Q ss_pred CCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035 444 LFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523 (783)
Q Consensus 444 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 523 (783)
|++|++++|.++ .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 30 l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 444444444443 2222223344444444444444444333344455555555555555554444455555555555555
Q ss_pred CCcccccCCCCcCCCCCCcEEECCCCccccc-CcccccCCCCCCEEeCCCccccccccccc-CcCCCc----EEEccCCc
Q 047035 524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN-IPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM----HLYLQNNA 597 (783)
Q Consensus 524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~----~L~L~~n~ 597 (783)
+|.+.+..+..++.+++|++|++++|++++. +|..+..+++|++|++++|++.+..+..+ .++.|+ +|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555554444555566666666666666542 45566666666666666666665544444 444444 66677777
Q ss_pred ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035 598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650 (783)
Q Consensus 598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 650 (783)
+++..+.. ....+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccc-cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 66443333 33346777777777776655555677777777777777777543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.7e-24 Score=219.39 Aligned_cols=227 Identities=18% Similarity=0.185 Sum_probs=168.6
Q ss_pred CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 498 (783)
.+..+++..+.+.+.. ....+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3444455555444332 2445666667777766665 3332 45667777777777777652 35667777788888
Q ss_pred cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578 (783)
Q Consensus 499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 578 (783)
++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 88877766666677788888888888888877777778888888888888888877676778888888888888888876
Q ss_pred ccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCC
Q 047035 579 IASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL 657 (783)
Q Consensus 579 ~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 657 (783)
.+..+ .+++|++|++++|++++..|..+..+++|+.|++++|++.+. ++.|+.|+++.|.++|.+|.+++.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 66666 788888888888888877777788899999999999988755 4468889999999999999887766
Q ss_pred CC
Q 047035 658 QK 659 (783)
Q Consensus 658 ~~ 659 (783)
..
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=208.26 Aligned_cols=204 Identities=21% Similarity=0.196 Sum_probs=143.4
Q ss_pred CcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC
Q 047035 469 LEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548 (783)
Q Consensus 469 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 548 (783)
.+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555555543 333222 3555666666666554445566666666666666666655555556666667777777
Q ss_pred CcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc
Q 047035 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP 627 (783)
Q Consensus 549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 627 (783)
|++++..+..+..+++|++|++++|++.+..+..+ .+++|++|++++|.+++..+..|..+++|+.|++++|++.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 76665555566667777777777777766666555 67777777777777775555667888889999999999887777
Q ss_pred hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 628 DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 628 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 778889999999999999987666678889999999999999987654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.7e-22 Score=208.64 Aligned_cols=202 Identities=25% Similarity=0.272 Sum_probs=136.3
Q ss_pred cCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 544 (783)
Q Consensus 465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 544 (783)
.++++++++++++.++. +|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..+. +.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 44455555555555543 232221 4555566666665555555566666666666666666543332 556666666
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccc
Q 047035 545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFF 623 (783)
Q Consensus 545 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 623 (783)
++++|+++ .+|..+..+++|++|++++|++++..|..+ .+++|++|++++|++++..+..|..+++|+.|+|++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 67666666 556666667777777777777766555556 6777777777777777666666777888888888888887
Q ss_pred cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCccc
Q 047035 624 GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS 673 (783)
Q Consensus 624 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 673 (783)
+..+..+..+++|+.|+|++|+++ .+|..+..+.+|+.+++++|++...
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 655566778888888888888888 6788888888888999999988754
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.9e-24 Score=229.04 Aligned_cols=257 Identities=18% Similarity=0.163 Sum_probs=154.9
Q ss_pred eCCCCcccccCCccccCCCCCCeeeccCCcCccccCh----hhhhcCC-CCcEEECcCccccccCCCcccCC-----CCc
Q 047035 424 DISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSA----TSVIRCA-SLEYLDVSENNFYGHIFPTYMNL-----TQL 493 (783)
Q Consensus 424 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L 493 (783)
+++.|.+++.+|..+...++|++|++++|.++ ..+. ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44444444444444444444555555555544 2222 2334444 55555555555554444333332 566
Q ss_pred cEEEccCccccccccccc----ccC-CCCcEEEccCCcccccCCCCcC----C-CCCCcEEECCCCcccccC----cccc
Q 047035 494 RWLYLKNNHFTGKIKAGL----LNS-HGLVVLDISNNLLSGHIPCWIG----N-FSYLDVLLMSKNHLEGNI----PVQI 559 (783)
Q Consensus 494 ~~L~L~~n~l~~~~~~~l----~~~-~~L~~L~Ls~n~l~~~~p~~l~----~-l~~L~~L~L~~n~l~~~~----p~~~ 559 (783)
++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|++++.. +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 666666666655444432 223 5666677766666654443332 2 246777777777776433 3333
Q ss_pred cCCC-CCCEEeCCCccccccccccc-----Cc-CCCcEEEccCCccccc----Cchhhhc-CCCCcEEECcCCccccCCc
Q 047035 560 NNFR-QLQLLDLSENRLFGSIASSL-----NL-SSIMHLYLQNNALSGQ----IPSTLFR-STELLTLDLRDNKFFGRIP 627 (783)
Q Consensus 560 ~~l~-~L~~L~Ls~N~l~~~~p~~~-----~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p 627 (783)
..++ +|++|++++|++++..+..+ .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|++.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 77777887777766555333 23 5788888888887753 4555655 4588899999988877654
Q ss_pred ----hhccCCcCCCEEeCcCCccccc-------CCcchhCCCCCCEEecCCCcCcccCCcchhhc
Q 047035 628 ----DQINNHSELRVLLLRGNYLQGQ-------IPIALCQLQKLGILDLSHNKLNGSIPSCFVNM 681 (783)
Q Consensus 628 ----~~l~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 681 (783)
..+..+++|+.|++++|.+.+. ++..+..+++|+.||+++|++.+..|..+.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence 3346778899999999985433 33456788889999999999988766665543
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.1e-24 Score=233.63 Aligned_cols=188 Identities=21% Similarity=0.270 Sum_probs=140.0
Q ss_pred cCCCCccEEEccCccccc----ccccccccCCCCcEEEccCCcccccCCCCcC----CC---------CCCcEEECCCCc
Q 047035 488 MNLTQLRWLYLKNNHFTG----KIKAGLLNSHGLVVLDISNNLLSGHIPCWIG----NF---------SYLDVLLMSKNH 550 (783)
Q Consensus 488 ~~l~~L~~L~L~~n~l~~----~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~ 550 (783)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455566666666666654 3455566666677777777666533333222 23 778888888888
Q ss_pred cc-ccCc---ccccCCCCCCEEeCCCcccc--c---cccccc-CcCCCcEEEccCCccc----ccCchhhhcCCCCcEEE
Q 047035 551 LE-GNIP---VQINNFRQLQLLDLSENRLF--G---SIASSL-NLSSIMHLYLQNNALS----GQIPSTLFRSTELLTLD 616 (783)
Q Consensus 551 l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~-~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ 616 (783)
++ +.+| ..+..+++|++|++++|++. | ..|..+ .+++|++|+|++|.++ +.+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 76 3444 45667788888888888886 2 344345 7888999999999886 67888899999999999
Q ss_pred CcCCccccC----Cchhcc--CCcCCCEEeCcCCcccc----cCCcch-hCCCCCCEEecCCCcCcccCC
Q 047035 617 LRDNKFFGR----IPDQIN--NHSELRVLLLRGNYLQG----QIPIAL-CQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 617 Ls~N~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP 675 (783)
|++|++.+. +|..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999876 667774 48999999999999998 588887 668999999999999998776
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.1e-22 Score=203.47 Aligned_cols=201 Identities=25% Similarity=0.227 Sum_probs=120.3
Q ss_pred cCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCc
Q 047035 439 GEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLV 518 (783)
Q Consensus 439 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 518 (783)
..+++++.++++++.++ .+|.... ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 34455555555555554 4443321 4555555555555555455555556666666666665543222 4556666
Q ss_pred EEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCc
Q 047035 519 VLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNA 597 (783)
Q Consensus 519 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~ 597 (783)
+|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++.+..+..+ .+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 455556666666666666666665555566666666666666666665555555 56666666666666
Q ss_pred ccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035 598 LSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 598 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
+++..+..|..+++|+.|+|++|++. .+|..+...++|+.|+|++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66444444566677777777777765 56666666667777777777665
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.3e-23 Score=214.16 Aligned_cols=224 Identities=21% Similarity=0.193 Sum_probs=177.2
Q ss_pred CCCeeeccCCcCccccChh--hhhcCCCCcEEECcCccccccCCCcc--cCCCCccEEEccCcccccccc----cccccC
Q 047035 443 ELFLLDLSRNKFSGDLSAT--SVIRCASLEYLDVSENNFYGHIFPTY--MNLTQLRWLYLKNNHFTGKIK----AGLLNS 514 (783)
Q Consensus 443 ~L~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~~ 514 (783)
.++.+.+.++.++...-.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 3556666666554211000 11234679999999999988888877 888999999999999887544 334568
Q ss_pred CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccccc--C--cccccCCCCCCEEeCCCccccccccc----cc-Cc
Q 047035 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGN--I--PVQINNFRQLQLLDLSENRLFGSIAS----SL-NL 585 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~-~l 585 (783)
++|++|++++|.+.+..|..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+ .+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 8999999999999988888999999999999999998653 2 2334688999999999999963 222 23 77
Q ss_pred CCCcEEEccCCcccccCchhhhcC---CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCE
Q 047035 586 SSIMHLYLQNNALSGQIPSTLFRS---TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGI 662 (783)
Q Consensus 586 ~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 662 (783)
++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998888888777 69999999999998 6788775 8999999999999964 43 688899999
Q ss_pred EecCCCcCcc
Q 047035 663 LDLSHNKLNG 672 (783)
Q Consensus 663 L~ls~N~l~g 672 (783)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.4e-24 Score=224.84 Aligned_cols=253 Identities=19% Similarity=0.224 Sum_probs=155.1
Q ss_pred CccEEEcccCcCCCCCChhhhhhc--CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccc-cChhhhhcCCCCc
Q 047035 394 LLRHLDISNNNLTGMLPQNMGIVI--QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGD-LSATSVIRCASLE 470 (783)
Q Consensus 394 ~L~~L~L~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-i~~~~~~~l~~L~ 470 (783)
.++.++++++.+. +..+ ..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++ ..+..+++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~-~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVT-GRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC---HHHH-HHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCS
T ss_pred hheeeccccccCC---HHHH-HhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCC
Confidence 3677787777665 2222 233 6777777777777655444 34566666666666665533 22 2334555555
Q ss_pred EEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCC-cccc-cCCCCcCCCCCCcEEECCC
Q 047035 471 YLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNN-LLSG-HIPCWIGNFSYLDVLLMSK 548 (783)
Q Consensus 471 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n-~l~~-~~p~~l~~l~~L~~L~L~~ 548 (783)
+|++++|.+++.. +..+..+++|++|++++| .+++ .++..+.++++|++|++++
T Consensus 122 ~L~L~~~~l~~~~------------------------~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 122 NLSLEGLRLSDPI------------------------VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp EEECTTCBCCHHH------------------------HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred EEeCcCcccCHHH------------------------HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 5555555554444 444444445555555554 3332 1333344555555666666
Q ss_pred C-ccccc-CcccccCCC-CCCEEeCCCc--ccc-ccccccc-CcCCCcEEEccCCc-ccccCchhhhcCCCCcEEECcCC
Q 047035 549 N-HLEGN-IPVQINNFR-QLQLLDLSEN--RLF-GSIASSL-NLSSIMHLYLQNNA-LSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 549 n-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
| .+++. ++..+..++ +|++|++++| .++ +.+|..+ .+++|++|++++|. +++..+..+.++++|+.|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 5 55543 455556666 6777777776 343 3445554 67777777777777 66667778888888999999888
Q ss_pred c-cccCCchhccCCcCCCEEeCcCCcccccCCcchhCC-CCCCEEecCCCcCcccCCcchhh
Q 047035 621 K-FFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQL-QKLGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 621 ~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~iP~~~~~ 680 (783)
. +.......+.++++|+.|++++| +.. ..+..+ ..+..|++++|+++|..|+.+++
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 22222225778899999999988 332 234444 23677779999999999988765
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.5e-23 Score=217.53 Aligned_cols=221 Identities=17% Similarity=0.149 Sum_probs=181.0
Q ss_pred CCCeeeccCCcCccccChhhhhcC--CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccc-cccccccCCCCcE
Q 047035 443 ELFLLDLSRNKFSGDLSATSVIRC--ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGK-IKAGLLNSHGLVV 519 (783)
Q Consensus 443 ~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~ 519 (783)
.++.++++++.+. ...+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3677888877765 2334455 7899999999998876655 55789999999999998865 7778888999999
Q ss_pred EEccCCcccccCCCCcCCCCCCcEEECCCC-ccccc-CcccccCCCCCCEEeCCCc-ccccc-ccccc-CcC-CCcEEEc
Q 047035 520 LDISNNLLSGHIPCWIGNFSYLDVLLMSKN-HLEGN-IPVQINNFRQLQLLDLSEN-RLFGS-IASSL-NLS-SIMHLYL 593 (783)
Q Consensus 520 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~-~l~-~L~~L~L 593 (783)
|++++|.+++..|..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+ .++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998888888999999999999999 67753 6777888999999999999 88764 56555 788 9999999
Q ss_pred cCC--ccc-ccCchhhhcCCCCcEEECcCCc-cccCCchhccCCcCCCEEeCcCCc-ccccCCcchhCCCCCCEEecCCC
Q 047035 594 QNN--ALS-GQIPSTLFRSTELLTLDLRDNK-FFGRIPDQINNHSELRVLLLRGNY-LQGQIPIALCQLQKLGILDLSHN 668 (783)
Q Consensus 594 ~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ls~N 668 (783)
++| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......++++++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 455 5677888889999999999999 777788889999999999999995 33222235788999999999988
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=9.7e-24 Score=225.93 Aligned_cols=276 Identities=17% Similarity=0.149 Sum_probs=181.2
Q ss_pred EEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCC----ccccCCC-CCCeeeccCCcCccccChhhhhcC-----C
Q 047035 398 LDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIP----YSIGEMK-ELFLLDLSRNKFSGDLSATSVIRC-----A 467 (783)
Q Consensus 398 L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l-----~ 467 (783)
++++.|.+++.+|.... ..++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+. .+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCC
Confidence 45666666665555442 34457777777777775554 5566676 777777777777643332 22332 7
Q ss_pred CCcEEECcCccccccCCCc----ccCC-CCccEEEccCcccccccccccc----c-CCCCcEEEccCCcccccCC----C
Q 047035 468 SLEYLDVSENNFYGHIFPT----YMNL-TQLRWLYLKNNHFTGKIKAGLL----N-SHGLVVLDISNNLLSGHIP----C 533 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~l~----~-~~~L~~L~Ls~n~l~~~~p----~ 533 (783)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . +++|++|++++|.+.+..+ .
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 7888888888777655443 3333 7788888888888765554433 2 3588888888888875333 3
Q ss_pred CcCCCC-CCcEEECCCCcccccCccccc----CC-CCCCEEeCCCcccccc----ccccc-C-cCCCcEEEccCCccccc
Q 047035 534 WIGNFS-YLDVLLMSKNHLEGNIPVQIN----NF-RQLQLLDLSENRLFGS----IASSL-N-LSSIMHLYLQNNALSGQ 601 (783)
Q Consensus 534 ~l~~l~-~L~~L~L~~n~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~-~-l~~L~~L~L~~n~l~~~ 601 (783)
.+..++ +|++|++++|++++..+..+. .+ ++|++|+|++|++.+. ++..+ . .++|++|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 888888888888877665443 44 5889999999988762 44444 3 46899999999988865
Q ss_pred Cch----hhhcCCCCcEEECcCCccccCCc-------hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcC
Q 047035 602 IPS----TLFRSTELLTLDLRDNKFFGRIP-------DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKL 670 (783)
Q Consensus 602 ~p~----~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l 670 (783)
.+. .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..+.+. + ....+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~--l-----~~~~~ 313 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL--I-----RELSG 313 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH--H-----HHHHT
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH--H-----HHCCC
Confidence 553 34566889999999998554433 356778889999999999987766554432 1 22234
Q ss_pred cccCCcchhhcc
Q 047035 671 NGSIPSCFVNML 682 (783)
Q Consensus 671 ~g~iP~~~~~~~ 682 (783)
.+.+|+.+..+.
T Consensus 314 ~~~~psll~~~~ 325 (362)
T 3goz_A 314 KADVPSLLNQCL 325 (362)
T ss_dssp CCCTTTC-----
T ss_pred CcchHHHHhhhh
Confidence 566777665554
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=227.52 Aligned_cols=242 Identities=20% Similarity=0.242 Sum_probs=178.5
Q ss_pred CChhhhhhcCCceEEeCCCCcccccC----CccccCCCCCCeeeccCCc---CccccChhh------hhcCCCCcEEECc
Q 047035 409 LPQNMGIVIQKLMYIDISKNNFEGNI----PYSIGEMKELFLLDLSRNK---FSGDLSATS------VIRCASLEYLDVS 475 (783)
Q Consensus 409 ~p~~~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~---l~~~i~~~~------~~~l~~L~~L~L~ 475 (783)
++..+. .+++|++|++++|.+.+.. +..+..+++|+.|++++|. +.+.+|... +..+++|++|+++
T Consensus 24 l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 444442 4667777777777776542 3346677788888887753 344444433 3567888888888
Q ss_pred Cccccc----cCCCcccCCCCccEEEccCcccccccccccc----cC---------CCCcEEEccCCccc-ccCC---CC
Q 047035 476 ENNFYG----HIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL----NS---------HGLVVLDISNNLLS-GHIP---CW 534 (783)
Q Consensus 476 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~----~~---------~~L~~L~Ls~n~l~-~~~p---~~ 534 (783)
+|.+.+ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.+. +.+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888876 3555677788888888888888654433333 33 78889999988887 3444 35
Q ss_pred cCCCCCCcEEECCCCcccc-----cCcccccCCCCCCEEeCCCcccc----ccccccc-CcCCCcEEEccCCccccc---
Q 047035 535 IGNFSYLDVLLMSKNHLEG-----NIPVQINNFRQLQLLDLSENRLF----GSIASSL-NLSSIMHLYLQNNALSGQ--- 601 (783)
Q Consensus 535 l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~-~l~~L~~L~L~~n~l~~~--- 601 (783)
+..+++|+.|++++|+++. ..|..+..+++|++|+|++|.++ +.+|..+ .+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 6678889999999998872 34447788889999999999886 5677766 788999999999998765
Q ss_pred -Cchhhhc--CCCCcEEECcCCcccc----CCchhc-cCCcCCCEEeCcCCcccccCC
Q 047035 602 -IPSTLFR--STELLTLDLRDNKFFG----RIPDQI-NNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 602 -~p~~l~~--l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~~p 651 (783)
+|..+.. +++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5666644 8999999999999987 488877 668999999999999987764
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.6e-21 Score=194.59 Aligned_cols=182 Identities=21% Similarity=0.204 Sum_probs=142.3
Q ss_pred CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571 (783)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 571 (783)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..++++++|++|++++|++++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666665 3444442 567777777777777777777777777788888777777777777777888888888
Q ss_pred Cccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035 572 ENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650 (783)
Q Consensus 572 ~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 650 (783)
+|++.+..+..+ .+++|++|+|++|++++..+..|..+++|+.|+|++|++.+..|..++.+++|+.|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 888876666666 7788888888888888666666788899999999999998777778889999999999999999777
Q ss_pred CcchhCCCCCCEEecCCCcCcccCCc
Q 047035 651 PIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 651 p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|..+..+++|+.|++++|++++..+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccc
Confidence 77889999999999999999887443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.2e-21 Score=194.69 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcc-cccccccccccCCCCcEEEccC-CcccccCCCCcCCCCCCcEEE
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNH-FTGKIKAGLLNSHGLVVLDISN-NLLSGHIPCWIGNFSYLDVLL 545 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~ 545 (783)
+|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444333344444445555555443 4433333444455555555554 445444444445555555555
Q ss_pred CCCCcccccCcccccCCCCCC---EEeCCCc-cccccccccc-CcCCCc-EEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035 546 MSKNHLEGNIPVQINNFRQLQ---LLDLSEN-RLFGSIASSL-NLSSIM-HLYLQNNALSGQIPSTLFRSTELLTLDLRD 619 (783)
Q Consensus 546 L~~n~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~-~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 619 (783)
+++|++++ +|. +..+++|+ +|++++| ++.+..+..+ .+++|+ +|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55555543 333 44444444 5555555 4444333334 455555 5555555555 3333322235566666666
Q ss_pred Cc-cccCCchhccCC-cCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035 620 NK-FFGRIPDQINNH-SELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668 (783)
Q Consensus 620 N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 668 (783)
|+ +.+..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 63 554444555556 66666666666665 33332 4556666666554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.8e-21 Score=192.97 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=126.0
Q ss_pred CCCeeeccCCcCccccChhhhhcCCCCcEEECcCcc-ccccCCCcccCCCCccEEEccC-cccccccccccccCCCCcEE
Q 047035 443 ELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENN-FYGHIFPTYMNLTQLRWLYLKN-NHFTGKIKAGLLNSHGLVVL 520 (783)
Q Consensus 443 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L 520 (783)
+|+.|++++|+++ .++...+..+++|++|++++|+ +.+..+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4555555555554 3444344555555555555554 4444444555666666666665 66665555566666666666
Q ss_pred EccCCcccccCCCCcCCCCCCc---EEECCCC-cccccCcccccCCCCCC-EEeCCCcccccccccccCcCCCcEEEccC
Q 047035 521 DISNNLLSGHIPCWIGNFSYLD---VLLMSKN-HLEGNIPVQINNFRQLQ-LLDLSENRLFGSIASSLNLSSIMHLYLQN 595 (783)
Q Consensus 521 ~Ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~ 595 (783)
++++|.+++ +|. ++.+++|+ +|++++| ++++..+..|..+++|+ +|++++|++....+..+..++|++|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 666666664 444 66666666 7777777 67655556677777777 77777777763333334447788888888
Q ss_pred Cc-ccccCchhhhcC-CCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035 596 NA-LSGQIPSTLFRS-TELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY 645 (783)
Q Consensus 596 n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 645 (783)
|+ +++..+..|.++ ++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 84 776666777778 888888888888864 4443 56788888887763
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=204.13 Aligned_cols=229 Identities=20% Similarity=0.171 Sum_probs=132.7
Q ss_pred CccEEEcccCcCCCCCChhh--hhhcCCceEEeCCCCcccccCCccc--cCCCCCCeeeccCCcCccccCh---hhhhcC
Q 047035 394 LLRHLDISNNNLTGMLPQNM--GIVIQKLMYIDISKNNFEGNIPYSI--GEMKELFLLDLSRNKFSGDLSA---TSVIRC 466 (783)
Q Consensus 394 ~L~~L~L~~n~l~~~~p~~~--~~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~i~~---~~~~~l 466 (783)
.++.+.+.++.+....-..+ ...+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35566666655432100000 1134678888888888888888777 7888888888888888754441 222345
Q ss_pred CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 546 (783)
++|++|++++|++.+..+..+..+++|++|++++|++.+... -..+..++.+++|++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--------------------LMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--------------------HHTTSCTTSSCCCCSCBC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--------------------hhHHHhhhcCCCCCEEEC
Confidence 666666666666655555555555555555555555443100 001122234455555555
Q ss_pred CCCcccccCcc----cccCCCCCCEEeCCCccccccccccc-Cc---CCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035 547 SKNHLEGNIPV----QINNFRQLQLLDLSENRLFGSIASSL-NL---SSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR 618 (783)
Q Consensus 547 ~~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 618 (783)
++|+++ .++. .+..+++|++|++++|++.+..|..+ .+ ++|++|++++|+++ .+|..+. ++|++|+|+
T Consensus 205 s~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 555554 1121 13455566666666666655544443 32 56666666666666 5565553 677777777
Q ss_pred CCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
+|++++. |. +..+++|+.|++++|+++.
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777653 33 4566777777777777763
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=196.70 Aligned_cols=195 Identities=26% Similarity=0.332 Sum_probs=144.6
Q ss_pred cccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhcc
Q 047035 69 LFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLA 148 (783)
Q Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~ 148 (783)
.+..+++|++|++++|.+... +.+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+.+. + .+.
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l------~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S--AIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G--GGT
T ss_pred cHHHcCCcCEEEeeCCCccCc------hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h--hhc
Confidence 445678888888888877653 346778888888888888875443 88888888888888888775 3 578
Q ss_pred CCCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcE
Q 047035 149 NLRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTE 228 (783)
Q Consensus 149 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 228 (783)
++++|++|++++|.+.... .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~ 177 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTT 177 (308)
T ss_dssp TCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCCch---hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Ch--hhcCCCCCCE
Confidence 8888888888888887753 37778888888888888776544 7777788888888887763 33 2777777888
Q ss_pred EEccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035 229 LDLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 229 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
|++++|.+.+..+ +..+++|++|++++|++++.. .+..+++|++|++++|.++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 8888877775332 677777777777777777443 2677777777777777765
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.6e-20 Score=195.75 Aligned_cols=191 Identities=22% Similarity=0.254 Sum_probs=108.6
Q ss_pred CCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035 467 ASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 546 (783)
++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 444444444444433 11 34445555555555555543222 45555555555555555532 23555556666666
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCC
Q 047035 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRI 626 (783)
Q Consensus 547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 626 (783)
++|++++. +. +..+++|++|++++|++.+..+ ...+++|++|++++|.+++ ++. +..+++|+.|++++|++.+..
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh
Confidence 66665532 22 5566666666666666654332 2256666666666666663 333 666677777777777775433
Q ss_pred chhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 627 PDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 627 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
| +..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 2 6667777777777777765442 6777777777777777764
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.2e-20 Score=187.65 Aligned_cols=179 Identities=18% Similarity=0.171 Sum_probs=123.7
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 547 (783)
+.++++++++.+.. +|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 34555665555543 333332 456666666666666556666666677777777777766666666777777777777
Q ss_pred CCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCC
Q 047035 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRI 626 (783)
Q Consensus 548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 626 (783)
+|++++..+..|..+++|++|++++|++.+..+..+ .+++|++|+|++|++++..+..|..+++|++|+|++|++.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 777776666666777777777777777775555555 6777777777777777655667777888888888888887777
Q ss_pred chhccCCcCCCEEeCcCCccccc
Q 047035 627 PDQINNHSELRVLLLRGNYLQGQ 649 (783)
Q Consensus 627 p~~l~~l~~L~~L~L~~N~l~~~ 649 (783)
|..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 77788888888888888888765
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.3e-20 Score=210.68 Aligned_cols=189 Identities=22% Similarity=0.241 Sum_probs=133.3
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 547 (783)
+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.+ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66666666666665 44433 256777777777766 445 235677777777777775 555 544 77777777
Q ss_pred CCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc
Q 047035 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP 627 (783)
Q Consensus 548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 627 (783)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 777775 555 56777777777777775 554 46778888888888775 666 54 78888888888886 566
Q ss_pred hhccCCcCC-------CEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcchhhccc
Q 047035 628 DQINNHSEL-------RVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCFVNMLF 683 (783)
Q Consensus 628 ~~l~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~ 683 (783)
. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|+++|.+|..++++..
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 6 543 66 88888888888 57888888888888888888888888888887754
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.2e-20 Score=181.92 Aligned_cols=179 Identities=19% Similarity=0.176 Sum_probs=133.4
Q ss_pred cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573 (783)
Q Consensus 494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 573 (783)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..++.+++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555555554 234333 356777777777777666666777777777777777777665566677778888888888
Q ss_pred cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCc
Q 047035 574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPI 652 (783)
Q Consensus 574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 652 (783)
++.+..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8776555555 77888888888888876666667888888888888888887666678888889999999987764
Q ss_pred chhCCCCCCEEecCCCcCcccCCcchhhcc
Q 047035 653 ALCQLQKLGILDLSHNKLNGSIPSCFVNML 682 (783)
Q Consensus 653 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 682 (783)
.++.|+.|+++.|+++|.||.+++++.
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345788889999999999998887765
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.9e-20 Score=179.98 Aligned_cols=174 Identities=21% Similarity=0.151 Sum_probs=107.4
Q ss_pred CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571 (783)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 571 (783)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554444445555556666666665554444455566666666666666665444455666666666666
Q ss_pred Cccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccC
Q 047035 572 ENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQI 650 (783)
Q Consensus 572 ~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 650 (783)
+|++.+..+..+ .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence 666665545444 566666777777766655555567777777777777766543 356777788888888888
Q ss_pred CcchhCCCCCCEEecCCCcCcccCCc
Q 047035 651 PIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 651 p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|.+++.++. ++..|...|..+.
T Consensus 182 p~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 182 RNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp BCTTSSBCT----TCSBBTTTCCBGG
T ss_pred eccCccccC----CccccccCCCcce
Confidence 877776655 4555555554444
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7e-20 Score=194.85 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=128.4
Q ss_pred cEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECc
Q 047035 396 RHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVS 475 (783)
Q Consensus 396 ~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 475 (783)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.++...|.++++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~--- 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI--- 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE---
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh---
Confidence 34555555555 455443 24555666666665543334555555666666666555544555444444444332
Q ss_pred CccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC-Cccccc
Q 047035 476 ENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK-NHLEGN 554 (783)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~ 554 (783)
+.+..|+++...|..|..+++|++|++++|.+.+..+..+.....+..|++.+ +++...
T Consensus 85 --------------------l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 85 --------------------RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp --------------------EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred --------------------hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccc
Confidence 23333444444444444444555555555554444444444444455555533 334433
Q ss_pred CcccccCCC-CCCEEeCCCcccccccccccCcCCCcEEEccC-CcccccCc-hhhhcCCCCcEEECcCCccccCCchhcc
Q 047035 555 IPVQINNFR-QLQLLDLSENRLFGSIASSLNLSSIMHLYLQN-NALSGQIP-STLFRSTELLTLDLRDNKFFGRIPDQIN 631 (783)
Q Consensus 555 ~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~-n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 631 (783)
.+..|..+. .++.|++++|++....+..+...+|+++++.+ |.++ .+| ..|.++++|++||+++|+++...+..
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-- 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG-- 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS--
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh--
Confidence 333444443 46666777776664444444556677777764 3444 444 45677777777777777776433323
Q ss_pred CCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCc
Q 047035 632 NHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNK 669 (783)
Q Consensus 632 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~ 669 (783)
+.+|+.|.+.++.--..+| .+..+++|+.++++++.
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 3445555554444344666 36777788888876543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.4e-19 Score=192.42 Aligned_cols=228 Identities=19% Similarity=0.176 Sum_probs=176.8
Q ss_pred CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccc-cccccCCCCcE-EEc
Q 047035 445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIK-AGLLNSHGLVV-LDI 522 (783)
Q Consensus 445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~-L~L 522 (783)
+.++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45667777776 677644 2578888888888887656678889999999999999866555 46788888775 667
Q ss_pred cCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc-cccccccccc-Cc-CCCcEEEccCCccc
Q 047035 523 SNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN-RLFGSIASSL-NL-SSIMHLYLQNNALS 599 (783)
Q Consensus 523 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~-~l-~~L~~L~L~~n~l~ 599 (783)
+.|++....|..|.++++|++|++++|++.+..+..+....++..+++.++ ++....+..+ .+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 789999888999999999999999999999777777788888999999764 5654444455 44 57899999999998
Q ss_pred ccCchhhhcCCCCcEEECcCCccccCCc-hhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCcch
Q 047035 600 GQIPSTLFRSTELLTLDLRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPSCF 678 (783)
Q Consensus 600 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~ 678 (783)
.+|......++|+.|++++|...+.+| +.|.++++|++|++++|+++ .+|.. .+.+|+.|.+.+++-...+|+ +
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-T
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-c
Confidence 566666677889999998655445666 46899999999999999999 45542 356777777777766678884 4
Q ss_pred hhc
Q 047035 679 VNM 681 (783)
Q Consensus 679 ~~~ 681 (783)
.++
T Consensus 243 ~~l 245 (350)
T 4ay9_X 243 EKL 245 (350)
T ss_dssp TTC
T ss_pred hhC
Confidence 433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.3e-19 Score=199.25 Aligned_cols=193 Identities=24% Similarity=0.335 Sum_probs=108.1
Q ss_pred CceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEc
Q 047035 419 KLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYL 498 (783)
Q Consensus 419 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 498 (783)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67778888877775 66544 266777777777776 566 235677777777777766 444 433 6666666
Q ss_pred cCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccc
Q 047035 499 KNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGS 578 (783)
Q Consensus 499 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 578 (783)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|+|++|+++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 6666665 443 35666666666666664 443 34566666666666654 444 43 55666666666655 3
Q ss_pred cccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhC
Q 047035 579 IASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQ 656 (783)
Q Consensus 579 ~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 656 (783)
+|. +. .+| +...+.|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..++.
T Consensus 195 lp~-~~-~~L-----------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 LPA-VP-VRN-----------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCC-CC--------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hhh-HH-Hhh-----------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 443 21 133 000011155555555554 34554444555555555555555555554444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=170.06 Aligned_cols=156 Identities=24% Similarity=0.244 Sum_probs=123.0
Q ss_pred cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCc-ccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC
Q 047035 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIP-VQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN 595 (783)
Q Consensus 518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~ 595 (783)
+.+++++|.++. +|..+. ..+++|++++|++++..| ..|..+++|++|++++|++++..+..+ .+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466666666653 454443 345677777777776544 346777777778887777776666666 778888888888
Q ss_pred CcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
|.+++..|..|.++++|++|+|++|++.+..|..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88887777778889999999999999998888899999999999999999998889999999999999999999998766
Q ss_pred c
Q 047035 676 S 676 (783)
Q Consensus 676 ~ 676 (783)
-
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 3
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=5e-18 Score=167.38 Aligned_cols=153 Identities=21% Similarity=0.230 Sum_probs=107.0
Q ss_pred cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN 596 (783)
Q Consensus 518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n 596 (783)
+.++++++.++ .+|..+. ++++.|++++|++++..+..|..+++|++|+|++|++.+..|..+ ++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 3343332 456666666666665555556666666666666666666556555 6666677777777
Q ss_pred cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCccc
Q 047035 597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGS 673 (783)
Q Consensus 597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ 673 (783)
.+++..+..|.++++|+.|+|++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 77644445567788888888888888887788888888888888888888877777788888889999999988753
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.5e-18 Score=176.38 Aligned_cols=171 Identities=27% Similarity=0.336 Sum_probs=84.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035 70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN 149 (783)
Q Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 149 (783)
+..+++|++|++++|.+... +.+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.+. + .+.+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~--~l~~ 110 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S--SLKD 110 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G--GGTT
T ss_pred hhhcCcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h--hhcc
Confidence 34455566666666655443 224555566666666665554322 55556666666666655553 2 3555
Q ss_pred CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035 150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 229 (783)
+++|++|++++|.+.... .+..+++|++|++++|++++. +.+..+++|++|++++|.+++. + .+..+++|++|
T Consensus 111 l~~L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L 183 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-V--PLAGLTKLQNL 183 (291)
T ss_dssp CTTCCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC-G--GGTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc-h--hhcCCCccCEE
Confidence 555555555555555431 344555555555555555433 3344444444444444444322 1 14444444444
Q ss_pred EccCccccccCCccccCCCCCCEEEcccccC
Q 047035 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHL 260 (783)
Q Consensus 230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 260 (783)
++++|.+++ ++ .+..+++|+.|++++|.+
T Consensus 184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 184 YLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 444444442 12 244444444444444443
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3e-18 Score=182.97 Aligned_cols=175 Identities=20% Similarity=0.169 Sum_probs=81.5
Q ss_pred cEEECcCccccccCCCcccCCCCccEEEccCcccccccccccc-cCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCC
Q 047035 470 EYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLL-NSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSK 548 (783)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 548 (783)
+.++++++.+.. +|..+. +.++.|++++|.+++..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 355555555543 333221 2345555555555544444444 455555555555555544444555555555555555
Q ss_pred CcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhh---hcCCCCcEEECcCCcccc
Q 047035 549 NHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTL---FRSTELLTLDLRDNKFFG 624 (783)
Q Consensus 549 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~ 624 (783)
|++++..+..|..+++|++|+|++|++.+..|..+ .+++|++|+|++|++++..+..| ..+++|+.|+|++|++.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 55554444445555555555555555544444444 44445555555554442222222 234444444444444443
Q ss_pred CCchhccCCcC--CCEEeCcCCccc
Q 047035 625 RIPDQINNHSE--LRVLLLRGNYLQ 647 (783)
Q Consensus 625 ~~p~~l~~l~~--L~~L~L~~N~l~ 647 (783)
..+..+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 33333444433 234444444443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.5e-18 Score=176.35 Aligned_cols=171 Identities=25% Similarity=0.376 Sum_probs=95.1
Q ss_pred cCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEE
Q 047035 465 RCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVL 544 (783)
Q Consensus 465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 544 (783)
.+++|++|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|+ +|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~------------------------~L 95 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLG------------------------WL 95 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC------------------------EE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCC------------------------EE
Confidence 345566666666655432 224445555555555555543322 44444444 44
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcccc
Q 047035 545 LMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFG 624 (783)
Q Consensus 545 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 624 (783)
++++|++++ +| .+..+++|++|++++|++.+ ++....+++|++|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 96 ~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 96 FLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 555444442 22 24555555555555555543 22222555566666666665532 456666677777777777665
Q ss_pred CCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 625 RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 625 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 171 ~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred chh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 443 6667777777777777664 33 36677777777777777664
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1e-17 Score=166.29 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=116.5
Q ss_pred CcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccC
Q 047035 517 LVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQN 595 (783)
Q Consensus 517 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~ 595 (783)
.+.++.+++.+. .+|..+. ++|++|++++|++++..|..|..+++|++|+|++|++....+..+ .+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666666555 4444332 566777777777776666667777777777777777755444555 677777777777
Q ss_pred CcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 596 NALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 596 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
|++++..+..|..+++|++|+|++|++. .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777666666788888999999999887 778888889999999999999987767778899999999999999988765
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.4e-18 Score=193.45 Aligned_cols=192 Identities=17% Similarity=0.286 Sum_probs=137.3
Q ss_pred CCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEE
Q 047035 418 QKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLY 497 (783)
Q Consensus 418 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (783)
..+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|++.+..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345566677777665433 456778888888888876 4442 5678888888888888876443 77788888888
Q ss_pred ccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccc
Q 047035 498 LKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577 (783)
Q Consensus 498 L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 577 (783)
|++|.+.+ ++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 88888774 23 577777888888888887753 3477777888888888877754 457777778888888887776
Q ss_pred ccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccC
Q 047035 578 SIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGR 625 (783)
Q Consensus 578 ~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 625 (783)
..| ...+++|+.|+|++|++++ +| .+..+++|+.|+|++|++.+.
T Consensus 168 ~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred chh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 555 2277777777777777774 33 467777777777777777654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=164.75 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=98.2
Q ss_pred EEEccCcccccccccccccCCCCcEEEccCCcccccCC-CCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035 495 WLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIP-CWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573 (783)
Q Consensus 495 ~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 573 (783)
.+++++|.++. +|..+ ...+++|++++|.+++..| ..|..+++|+.|++++|++++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555542 34333 2344566666666655433 33556666666666666666555556666666666666666
Q ss_pred cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
++.+..+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 6665555555 66666667777777766667777777777777777777777777777777777778888777775543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.2e-17 Score=162.79 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=114.1
Q ss_pred cEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035 494 RWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573 (783)
Q Consensus 494 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 573 (783)
+.++++++.++ .+|..+ .++++.|++++|.+.+..+..|..+++|+.|++++|++++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45566666665 344433 256777777777777666667777777777777777777777777777778888888888
Q ss_pred cccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 574 RLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 574 ~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
+++...+..+ .+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775555555 67888888888888887777888888888888888888887777778888888888888888864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.6e-17 Score=187.96 Aligned_cols=172 Identities=30% Similarity=0.360 Sum_probs=87.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCchhccC
Q 047035 70 FLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNYNNFNDSVLPYLNTLTSLTTLNLYYNRIGGLNPSQGLAN 149 (783)
Q Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~l~~ 149 (783)
+..+++|+.|++++|.+... +.+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+. + .+..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~--~l~~ 107 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S--SLKD 107 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T--TSTT
T ss_pred hhcCCCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h--hhcc
Confidence 34455566666665555432 234555556666665555554332 55555555555555555543 2 3555
Q ss_pred CCCCCeEeCCCCCCCCCcCccccCCCCCCCEEECcCCcCcccCCCcCCCCCCCEEEccCccCcccCCcccccCCCCCcEE
Q 047035 150 LRNLKALNLSWNGISSGATRLGLGNLTNLEVLDLSANRISGSLTELAPFRNLKVLGMRNNLLNGSVESKGICELKNLTEL 229 (783)
Q Consensus 150 l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 229 (783)
+++|++|+|++|.+.... .+..+++|+.|+|++|.+++. +. +..+++|+.|
T Consensus 108 l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l-~~-------------------------l~~l~~L~~L 158 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDI-TV-------------------------LSRLTKLDTL 158 (605)
T ss_dssp CTTCCEEECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCC-GG-------------------------GGSCTTCSEE
T ss_pred CCCCCEEEecCCCCCCCc---cccCCCccCEEECCCCccCCc-hh-------------------------hcccCCCCEE
Confidence 555555555555555431 344555555555555555433 33 4444555555
Q ss_pred EccCccccccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCCccc
Q 047035 230 DLGENNLEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDNNFQ 285 (783)
Q Consensus 230 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 285 (783)
+|++|.+.+..| +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+.
T Consensus 159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 555555444333 44555555555555555432 2 3455555555555555544
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=6.8e-17 Score=160.40 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=122.3
Q ss_pred ccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCC
Q 047035 493 LRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE 572 (783)
Q Consensus 493 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 572 (783)
-+.++.+++.++ .+|..+ .++|++|++++|.+.+..|..|.++++|++|++++|++.+..+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345666666665 445444 36788888888888877777788888888888888888765556678888888888888
Q ss_pred ccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 573 NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 573 N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
|++++..+..+ .+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.+..+..+..+++|+.|++++|.+.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 88887666666 7888888888888888 788888899999999999999987777778889999999999999886543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.1e-17 Score=160.14 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035 514 SHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592 (783)
Q Consensus 514 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~ 592 (783)
+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++.+..+..+ .+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444555554444 233 3444555555555555443 12245555666666666666655455555 566666666
Q ss_pred ccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 593 LQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 593 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
+++|.+++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 66666666666777777777777777777334555 57777788888888887774 34 67778888888888887653
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.6e-17 Score=174.59 Aligned_cols=177 Identities=24% Similarity=0.221 Sum_probs=151.6
Q ss_pred CeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCccc-CCCCccEEEccCcccccccccccccCCCCcEEEcc
Q 047035 445 FLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYM-NLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDIS 523 (783)
Q Consensus 445 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls 523 (783)
+.++++++.++ .+|.... +.++.|++++|++++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 57899999987 6776542 5689999999999987777777 89999999999999998888889999999999999
Q ss_pred CCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc----CcCCCcEEEccCCccc
Q 047035 524 NNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL----NLSSIMHLYLQNNALS 599 (783)
Q Consensus 524 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~l~~L~~L~L~~n~l~ 599 (783)
+|.+.+..+..|.++++|+.|+|++|++++..|..|..+++|++|+|++|++.+..+..+ .+++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999998888889999999999999999998888899999999999999999986555443 4889999999999999
Q ss_pred ccCchhhhcCCC--CcEEECcCCccccC
Q 047035 600 GQIPSTLFRSTE--LLTLDLRDNKFFGR 625 (783)
Q Consensus 600 ~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 625 (783)
+..+..+..++. ++.|+|++|.+...
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 666677888876 48899999998643
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.6e-17 Score=168.69 Aligned_cols=168 Identities=23% Similarity=0.310 Sum_probs=92.8
Q ss_pred CccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCC
Q 047035 492 QLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLS 571 (783)
Q Consensus 492 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 571 (783)
++..++++++.+++.. .+..+++|++|++++|.+.. +| .++.+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3344444444444222 24444555555555555542 23 34555555555555555553322 5555555555565
Q ss_pred CcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 572 ENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 572 ~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
+|++.+ +|.... ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. | .+..+++|+.|++++|++++.
T Consensus 94 ~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 555553 222223 566666666666653 23 466666666666666666543 3 466666677777777766654
Q ss_pred cchhCCCCCCEEecCCCcCccc
Q 047035 652 IALCQLQKLGILDLSHNKLNGS 673 (783)
Q Consensus 652 ~~l~~l~~L~~L~ls~N~l~g~ 673 (783)
..+..+++|+.|++++|++++.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 4566667777777777776654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.8e-17 Score=156.95 Aligned_cols=151 Identities=18% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEE
Q 047035 466 CASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLL 545 (783)
Q Consensus 466 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 545 (783)
+++|++|++++|.+.. ++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3445555555555442 22 3444555555555555443 122445555555555555555555555555555566666
Q ss_pred CCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCcc
Q 047035 546 MSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKF 622 (783)
Q Consensus 546 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 622 (783)
+++|++++..|..+..+++|++|++++|+..+.+|....+++|++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 6666555555555555555555555555522233321134444444444444432 22 333444444444444443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.2e-19 Score=202.02 Aligned_cols=105 Identities=28% Similarity=0.318 Sum_probs=47.7
Q ss_pred CCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035 565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644 (783)
Q Consensus 565 L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 644 (783)
|+.|++++|++++ +|....+++|+.|+|++|.++ .+|..+.++++|+.|+|++|++++ +| .++.+++|+.|+|++|
T Consensus 443 L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 3444444444433 233114444444444444444 444444444444444444444443 33 4444444444444444
Q ss_pred cccccC-CcchhCCCCCCEEecCCCcCccc
Q 047035 645 YLQGQI-PIALCQLQKLGILDLSHNKLNGS 673 (783)
Q Consensus 645 ~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ 673 (783)
++++.+ |..++.+++|+.|++++|++++.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 444443 44444444455555555544443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.7e-19 Score=198.64 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=61.9
Q ss_pred CcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035 541 LDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619 (783)
Q Consensus 541 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 619 (783)
|+.|++++|++++ +|. ++.+++|+.|+|++|+++ .+|..+ .+++|+.|+|++|.+++ +| .+.++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 3444444444442 333 444444444444444444 334333 44444555555555543 44 555666666666666
Q ss_pred CccccCC-chhccCCcCCCEEeCcCCcccccCCcc---hhCCCCCCEEec
Q 047035 620 NKFFGRI-PDQINNHSELRVLLLRGNYLQGQIPIA---LCQLQKLGILDL 665 (783)
Q Consensus 620 N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~l 665 (783)
|++++.. |..++.+++|+.|+|++|++++..|.. +..+++|+.||+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6665554 666666666666666666666544321 233666666653
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.1e-16 Score=150.96 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=108.6
Q ss_pred cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccc-cc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcC
Q 047035 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIAS-SL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRD 619 (783)
Q Consensus 542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 619 (783)
+.+++++|+++ .+|..+.. ++++|++++|++.+..+. .+ .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56666666664 55554433 677778888877765554 24 788888888888888888888899999999999999
Q ss_pred CccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCCc
Q 047035 620 NKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIPS 676 (783)
Q Consensus 620 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~ 676 (783)
|++.+..|..+.++++|+.|+|++|++++..|..+..+++|+.|++++|+++|..|-
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 999988888899999999999999999999999999999999999999999988764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=5.4e-17 Score=164.70 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=93.9
Q ss_pred CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEE
Q 047035 441 MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVL 520 (783)
Q Consensus 441 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 520 (783)
+.++..++++++.++ .++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++
T Consensus 18 l~~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--------------- 77 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD--------------- 77 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC---------------
T ss_pred HHHHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC---------------
Confidence 444555556666555 222 13445556666666555543 22 34444555555555555443
Q ss_pred EccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccc
Q 047035 521 DISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSG 600 (783)
Q Consensus 521 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~ 600 (783)
..+ ++++++|+.|++++|++++ +|. +.. ++|++|++++|++++ ++....+++|++|++++|++++
T Consensus 78 ---------~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 78 ---------LSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp ---------CGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB
T ss_pred ---------Chh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC
Confidence 222 4444555555555555543 222 111 555666666665554 2322256666666666666653
Q ss_pred cCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCccccc
Q 047035 601 QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQ 649 (783)
Q Consensus 601 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 649 (783)
+| .+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+++.
T Consensus 143 -~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 -IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 33 566777777777777777665 5677777788888888877754
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.9e-17 Score=192.18 Aligned_cols=178 Identities=25% Similarity=0.261 Sum_probs=75.6
Q ss_pred CCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCC
Q 047035 484 FPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFR 563 (783)
Q Consensus 484 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 563 (783)
+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+.++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 334445555555555555554 34444445555555555555555 45555555555555555555555 4455555555
Q ss_pred CCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCC-CcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035 564 QLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTE-LLTLDLRDNKFFGRIPDQINNHSELRVLLL 641 (783)
Q Consensus 564 ~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 641 (783)
+|++|+|++|.+. .+|..+ .+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence 5555555555554 444444 5555555555555555555555543321 123556666666555542 233444
Q ss_pred cCC--------cccccCCcchhCCCCCCEEecCCCcCc
Q 047035 642 RGN--------YLQGQIPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 642 ~~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
++| .+.+..+..+..+..+....+++|-+.
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------CCC
T ss_pred ecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 444 333333444555666666667777665
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=7.8e-17 Score=187.11 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=92.1
Q ss_pred hhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCC
Q 047035 460 ATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFS 539 (783)
Q Consensus 460 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 539 (783)
...+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 344556666666666666665 34455556666777777777666 56666667777777777777776 5676777777
Q ss_pred CCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-Cc-CCCcEEEccCCcccccCchhhhcCCCCcEEEC
Q 047035 540 YLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NL-SSIMHLYLQNNALSGQIPSTLFRSTELLTLDL 617 (783)
Q Consensus 540 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 617 (783)
+|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+ .+ ..+..++|++|.+++.+|.. |+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence 7777777777775 566667777777777777777777666665 22 12234567777777766643 445555
Q ss_pred cCC--------ccccCCchhccCCcCCCEEeCcCCccc
Q 047035 618 RDN--------KFFGRIPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 618 s~N--------~l~~~~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
+.| .+.+..+..+..+..++...++.|-+.
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----------------------------------CCC
T ss_pred ecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 555 233333334455555666666666654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.2e-15 Score=143.54 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=84.5
Q ss_pred CCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035 539 SYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD 616 (783)
Q Consensus 539 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 616 (783)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+ .+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34555555555554 44455555555555555555555543 223 566666666666666655676666777777777
Q ss_pred CcCCccccCC-chhccCCcCCCEEeCcCCcccccCC---cchhCCCCCCEEecCCCcCc
Q 047035 617 LRDNKFFGRI-PDQINNHSELRVLLLRGNYLQGQIP---IALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 617 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~N~l~ 671 (783)
+++|++.+.. +..+..+++|+.|++++|++++..+ ..+..+++|+.||+++|++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777776532 2667777888888888888775544 36777888888888888765
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.3e-15 Score=140.13 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=83.5
Q ss_pred CCCcEEECCCCccc-ccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEE
Q 047035 539 SYLDVLLMSKNHLE-GNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLD 616 (783)
Q Consensus 539 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 616 (783)
++|+.|++++|.++ +.+|..+..+++|++|++++|++.+. ..+ .+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555555 45555555555666666666655543 223 566666666666666655677777777788888
Q ss_pred CcCCccccC-CchhccCCcCCCEEeCcCCcccccCC---cchhCCCCCCEEecCC
Q 047035 617 LRDNKFFGR-IPDQINNHSELRVLLLRGNYLQGQIP---IALCQLQKLGILDLSH 667 (783)
Q Consensus 617 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~ls~ 667 (783)
+++|++.+. .|..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888877653 34677778888888888888876555 4677888888888763
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=1.5e-15 Score=159.96 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=167.0
Q ss_pred CCCCEEEccCCcccCCCChhhhhcCCCCcEEEccCccccCcccCCccCCCCccEEEcccCcCCCCCChhhhhh-------
Q 047035 344 YDFKFLDLSSNKLVGNFPTWLMQNNTKLEVLRLSNNSFSGILQLPKVKHDLLRHLDISNNNLTGMLPQNMGIV------- 416 (783)
Q Consensus 344 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~------- 416 (783)
.+++.|.++++--. .-...+...+++|++|+|++|++.... ...+..+.++.+.+..| .+|...+..
T Consensus 25 ~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~-~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYS-GKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEE-ESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred CceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEec-Ccccccccccccccccc----ccCHHHhccccccccc
Confidence 35666666543111 111122222677888888888777221 11122222344444444 345555556
Q ss_pred -cCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccc----cccCCCcccCCC
Q 047035 417 -IQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNF----YGHIFPTYMNLT 491 (783)
Q Consensus 417 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~ 491 (783)
+++|+.+++.+ .++..-+.+|.+|++|+.+++++|.+. .++...|..+.++..+....+.. ......+|.++.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77778887777 666555667777788888888777776 66666777777666666655322 122233455566
Q ss_pred Ccc-EEEccCccccccccccc----ccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCC
Q 047035 492 QLR-WLYLKNNHFTGKIKAGL----LNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQ 566 (783)
Q Consensus 492 ~L~-~L~L~~n~l~~~~~~~l----~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 566 (783)
.|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|+++...+..|.+|++|+
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 666 44443321 111111 1233445555544321111111111256777777777777766666777777777
Q ss_pred EEeCCCccccccccccc-CcCCCc-EEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeC
Q 047035 567 LLDLSENRLFGSIASSL-NLSSIM-HLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLL 641 (783)
Q Consensus 567 ~L~Ls~N~l~~~~p~~~-~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 641 (783)
.+++.+| +...-+..| ++++|+ .+++.+ .++..-+.+|.+|++|+.+++++|++...-+..|.++++|+.++.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7777776 554444555 777787 787777 666556677888888888888888887666677888888887753
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.7e-15 Score=142.49 Aligned_cols=135 Identities=24% Similarity=0.234 Sum_probs=88.0
Q ss_pred CCCcEEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035 515 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~ 592 (783)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+ .+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45555566666666666666666544 456666666666666666665555555 466777777
Q ss_pred ccCCccccc-CchhhhcCCCCcEEECcCCccccCCc---hhccCCcCCCEEeCcCCcccccCCc
Q 047035 593 LQNNALSGQ-IPSTLFRSTELLTLDLRDNKFFGRIP---DQINNHSELRVLLLRGNYLQGQIPI 652 (783)
Q Consensus 593 L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~~~p~ 652 (783)
+++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. .+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 777766642 12567777778888888887765544 46777788888888888776 4443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=1.3e-15 Score=146.53 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=55.6
Q ss_pred CCcEEECcCccccccCCC-cccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEEC
Q 047035 468 SLEYLDVSENNFYGHIFP-TYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLM 546 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 546 (783)
++++|++++|++.+..+. .+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444555555544443332 2444455555555555555444444555555555555555555544444555555555555
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCccccc
Q 047035 547 SKNHLEGNIPVQINNFRQLQLLDLSENRLFG 577 (783)
Q Consensus 547 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 577 (783)
++|++++..|..+..+++|++|++++|++.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555555555555555555555555555544
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.2e-15 Score=158.55 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=160.0
Q ss_pred CCCCcEEEccCccccCcccCCccC-CCCccEEEcccCcCCCC-CChhhhhhcCCceEEeCCCCcccccCCccccC-----
Q 047035 368 NTKLEVLRLSNNSFSGILQLPKVK-HDLLRHLDISNNNLTGM-LPQNMGIVIQKLMYIDISKNNFEGNIPYSIGE----- 440 (783)
Q Consensus 368 l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----- 440 (783)
+.++++|.++++- .......... +++|+.|||++|++... .+.. .++.++.+.+..|.+. +.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhccccccc
Confidence 3567777777641 1110001112 66777888887777510 0111 1222344444444322 234555
Q ss_pred ---CCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCccc----cccccccccc
Q 047035 441 ---MKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHF----TGKIKAGLLN 513 (783)
Q Consensus 441 ---l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~ 513 (783)
|++|+.+++.+ .++ .++...|.+|++|+.+++.+|.+....+.+|.++.++..+....+.. ......+|.+
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 565 56666677777777777777776666666676666666665544221 1122334555
Q ss_pred CCCCc-EEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcE
Q 047035 514 SHGLV-VLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMH 590 (783)
Q Consensus 514 ~~~L~-~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~ 590 (783)
+..|+ .+.+....-. ..+...-....+++.+.+.++-...........+++|+.+++++|++....+..| ++++|++
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 55555 3443322110 0000000123344555544432111111111236777777887777765555555 7777777
Q ss_pred EEccCCcccccCchhhhcCCCCc-EEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEec
Q 047035 591 LYLQNNALSGQIPSTLFRSTELL-TLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDL 665 (783)
Q Consensus 591 L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~l 665 (783)
+++.+| ++..-+.+|.+|++|+ .+++.+ .+...-+..|.++++|+.+++++|+++..-+..|.++++|+.++.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777776 6655566777777777 777777 565555567777777777777777777666667777777777653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.4e-15 Score=138.33 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCcEEEccCCccc-ccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEE
Q 047035 515 HGLVVLDISNNLLS-GHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLY 592 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~ 592 (783)
++|+.|++++|.+. +.+|..++.+++|++|++++|.+++. ..+..+++|++|++++|++.+.+|..+ .+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55666666666666666666666644 556666667777777777666566555 466777777
Q ss_pred ccCCccccc-CchhhhcCCCCcEEECcCCccccCCc---hhccCCcCCCEEeCcC
Q 047035 593 LQNNALSGQ-IPSTLFRSTELLTLDLRDNKFFGRIP---DQINNHSELRVLLLRG 643 (783)
Q Consensus 593 L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~ 643 (783)
+++|++++. .|..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777776642 33667777777777777777766555 4677777777777653
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=9.5e-15 Score=138.66 Aligned_cols=131 Identities=21% Similarity=0.223 Sum_probs=99.5
Q ss_pred cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
+.+++++++++ .+|..+ .++|++|++++|++.+..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555555555 334332 2466777777777665555555 6777777777777777656666788899999999999
Q ss_pred ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9987777778899999999999999996666667889999999999999998876
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=139.58 Aligned_cols=129 Identities=27% Similarity=0.287 Sum_probs=93.7
Q ss_pred cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
+.+++++|.++ .+|..+. ++|++|++++|++. .+|..+ .+++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 3444332 45666666666665 445455 6677777777777777666677888888888888888
Q ss_pred ccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcccC
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNGSI 674 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 674 (783)
++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 888877778888888888888888888666667888899999999999987644
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.3e-13 Score=148.14 Aligned_cols=240 Identities=10% Similarity=0.074 Sum_probs=121.3
Q ss_pred CccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEE
Q 047035 394 LLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLD 473 (783)
Q Consensus 394 ~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 473 (783)
+|+.+.+..+ ++ .++...|.. .+|+.+.+.. .+...-+.+|.+|++|+.+++.+|+++ .++...|. +.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence 3555554443 22 333333333 2455555553 344334455556666666666665555 45555543 45566666
Q ss_pred CcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCccc-
Q 047035 474 VSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLE- 552 (783)
Q Consensus 474 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~- 552 (783)
+..+ +......+|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.+....+.+|.++++|+.+.+.+|.+.
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 6532 44444445555555555555543 33333344444 455555552 2333344444555555555555444432
Q ss_pred ----ccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCch
Q 047035 553 ----GNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPD 628 (783)
Q Consensus 553 ----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 628 (783)
...+.+|. ++++|+.+++. +.++..-..+|.+|++|+.++|..+ +...-+.
T Consensus 286 ~~~~~I~~~aF~-----------------------~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 286 DPEAMIHPYCLE-----------------------GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTCEECTTTTT-----------------------TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred CcccEECHHHhh-----------------------CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 12233344 44455555554 2244334455666666666666443 4444445
Q ss_pred hccCCcCCCEEeCcCCcccccCCcchhCCC-CCCEEecCCCc
Q 047035 629 QINNHSELRVLLLRGNYLQGQIPIALCQLQ-KLGILDLSHNK 669 (783)
Q Consensus 629 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 669 (783)
.|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 56666 677777777766655555566663 56677665543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=1.5e-13 Score=147.71 Aligned_cols=234 Identities=7% Similarity=0.032 Sum_probs=153.4
Q ss_pred CccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccC
Q 047035 435 PYSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNS 514 (783)
Q Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~ 514 (783)
..+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .+......+|.+|++|+.+++.+|.++.....+|. +
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred HhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 3444443 4666665544 33 4555555553 466666654 44444455666666666666666666644444444 4
Q ss_pred CCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEc
Q 047035 515 HGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYL 593 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L 593 (783)
.+|+.+.+..+ +......+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+++. +.+...-+..| ++++|+.+++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEe
Confidence 66777776643 55555566667777777777654 44344455555 567777773 34444444555 7777888877
Q ss_pred cCCccc-----ccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCC
Q 047035 594 QNNALS-----GQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHN 668 (783)
Q Consensus 594 ~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N 668 (783)
.+|.+. ..-+.+|.+|++|+.+++.+ .+...-...|.++++|+.+.+..| ++..-+..|.++ +|+.+++++|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 776654 35577899999999999994 576666678999999999999665 665667789999 9999999999
Q ss_pred cCcccCCcchhhc
Q 047035 669 KLNGSIPSCFVNM 681 (783)
Q Consensus 669 ~l~g~iP~~~~~~ 681 (783)
.+....+..|.++
T Consensus 356 ~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 356 TPPQVFEKVWYGF 368 (401)
T ss_dssp SCCBCCCSSCCCS
T ss_pred CCcccccccccCC
Confidence 8765444445443
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5.8e-14 Score=134.95 Aligned_cols=127 Identities=28% Similarity=0.323 Sum_probs=82.6
Q ss_pred cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN 596 (783)
Q Consensus 518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n 596 (783)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++|++|++++|++++..+..+ ++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 3343332 35666666666665 455666666666666666666665555555 6666777777777
Q ss_pred cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
.+++..|..|.++++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7766666667777777777777777776555567777778888888777764
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.8e-13 Score=146.31 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=75.4
Q ss_pred ccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCC
Q 047035 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH 515 (783)
Q Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 515 (783)
..+.++..++.+.+..+.. .+....|..+..++.+......+. ..+|..+.+|+.+.+.++ ++.....+|.+|.
T Consensus 247 ~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 247 SVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp STTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence 3445555555555554432 234444555555555555444322 234555556666665443 3334445566666
Q ss_pred CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEE
Q 047035 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHL 591 (783)
Q Consensus 516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L 591 (783)
+|+.+++..+ ++.....+|.++++|+.+.+..+ ++..-..+|.+|.+|+.+++..+- . .+...+ ++++|+.+
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 6666666433 44444555666666666666554 443445566666666666665431 1 222334 55555543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=7e-14 Score=132.64 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=75.2
Q ss_pred cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN 596 (783)
Q Consensus 518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n 596 (783)
+.++++++.+. .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+ .+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44445555444 223222 1345555555555554444445555556666666665554444444 5566666666666
Q ss_pred cccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCcccccCC
Q 047035 597 ALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQGQIP 651 (783)
Q Consensus 597 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 651 (783)
++++..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665555556666777777777777765544455667777777777777765544
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=4.6e-13 Score=144.56 Aligned_cols=213 Identities=10% Similarity=0.041 Sum_probs=137.0
Q ss_pred CccCCCCccEEEcccCcCCCCCChhhhhhcCCceEEeCCCCcccccCCccccCCCCCCeeeccCCcCccccChhhhhcCC
Q 047035 388 PKVKHDLLRHLDISNNNLTGMLPQNMGIVIQKLMYIDISKNNFEGNIPYSIGEMKELFLLDLSRNKFSGDLSATSVIRCA 467 (783)
Q Consensus 388 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 467 (783)
.+..+.+|+.+++..+ ++ .++...+..+..|+.+.+..+... +.........|+.+.+.... + .+....+..+.
T Consensus 180 ~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~ 253 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCT 253 (394)
T ss_dssp TTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCS
T ss_pred cccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccc
Confidence 3344444555544433 21 333344445555665555544321 22333445667777775432 2 45566677888
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECC
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMS 547 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 547 (783)
.++.+.+..+.. ......|..+..++.+....+.+ ....|..+.+|+.+.+.++ +......+|.++++|+.+++.
T Consensus 254 ~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 254 DLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp SCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 888888876643 33456677888888888776543 2446777888888888765 555666778888889988886
Q ss_pred CCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035 548 KNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615 (783)
Q Consensus 548 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 615 (783)
.+ ++..-..+|.+|.+|+.+++..+ +...-...| ++++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 54 65555678888888999988776 554445556 8888998888765 32 345677888877764
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=3.4e-16 Score=151.65 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=102.3
Q ss_pred ccCCCCcEEEccCCcccccCCC------CcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-C
Q 047035 512 LNSHGLVVLDISNNLLSGHIPC------WIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-N 584 (783)
Q Consensus 512 ~~~~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~ 584 (783)
.....++.++++.+.+.+.+|. .++.+++|++|++++|++++ +| .+..+++|++|++++|++. .+|..+ .
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555566666666655554 56666677777777777664 45 6666777777777777766 455554 5
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCc-hhccCCcCCCEEeCcCCcccccCCcc----------
Q 047035 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIP-DQINNHSELRVLLLRGNYLQGQIPIA---------- 653 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~~---------- 653 (783)
+++|++|++++|++++ +| .+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 5777777777777764 44 57777778888888877764322 46777788888888888877665542
Q ss_pred hhCCCCCCEEecCCCcCc
Q 047035 654 LCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 654 l~~l~~L~~L~ls~N~l~ 671 (783)
+..+++|+.|| +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67788888776 56554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=8e-14 Score=132.03 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=86.6
Q ss_pred CCCCCcEEECCCCcccccCcccccCC-CCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEE
Q 047035 537 NFSYLDVLLMSKNHLEGNIPVQINNF-RQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTL 615 (783)
Q Consensus 537 ~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 615 (783)
++++|+.|++++|+++ .+|. +..+ ++|++|++++|++.+. +....+++|++|++++|.+++..|..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555555554 2232 2222 2566666666666543 222266667777777777765444555788888888
Q ss_pred ECcCCccccCCch--hccCCcCCCEEeCcCCcccccCCcc----hhCCCCCCEEecCCCcCc
Q 047035 616 DLRDNKFFGRIPD--QINNHSELRVLLLRGNYLQGQIPIA----LCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 616 ~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~ls~N~l~ 671 (783)
++++|++. .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|+..
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888884 4665 7788888888888888887 45654 888999999999988765
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.1e-13 Score=131.05 Aligned_cols=130 Identities=22% Similarity=0.191 Sum_probs=77.3
Q ss_pred ccCCCCcEEEccCCcccccCCCCcCCC-CCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCc
Q 047035 512 LNSHGLVVLDISNNLLSGHIPCWIGNF-SYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIM 589 (783)
Q Consensus 512 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~ 589 (783)
.++.+|+.|++++|.+.. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..+ .+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344555555555555552 232 2232 2556666666655543 345566666666666666654443443 566666
Q ss_pred EEEccCCcccccCch--hhhcCCCCcEEECcCCccccCCchh----ccCCcCCCEEeCcCCccc
Q 047035 590 HLYLQNNALSGQIPS--TLFRSTELLTLDLRDNKFFGRIPDQ----INNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 590 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 647 (783)
+|++++|.++ .+|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666664 4554 6667777777777777775 34543 677777778887777665
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.1e-15 Score=148.06 Aligned_cols=160 Identities=20% Similarity=0.219 Sum_probs=91.9
Q ss_pred hcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCCcEEEccCCcccccCCCCcCCCCCCcE
Q 047035 464 IRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDV 543 (783)
Q Consensus 464 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 543 (783)
.....++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~ 74 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRI 74 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCE
T ss_pred HhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCE
Confidence 3445566666666666554443 00 112245555555666665555554 44 5555566666
Q ss_pred EECCCCcccccCcccccCCCCCCEEeCCCcccccccccccCcCCCcEEEccCCcccccCc-hhhhcCCCCcEEECcCCcc
Q 047035 544 LLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIP-STLFRSTELLTLDLRDNKF 622 (783)
Q Consensus 544 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l 622 (783)
|++++|+++ .+|..+..+++|++|++++|++.+ +|....+++|++|++++|++++..+ ..+..+++|++|++++|++
T Consensus 75 L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 75 LSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred EECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 666666655 455555555666666666666654 3422256666666666666663221 3566677777777777777
Q ss_pred ccCCch----------hccCCcCCCEEeCcCCccc
Q 047035 623 FGRIPD----------QINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 623 ~~~~p~----------~l~~l~~L~~L~L~~N~l~ 647 (783)
.+.+|. .+..+++|+.|+ +|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 665554 266777777776 55554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=9.3e-13 Score=123.66 Aligned_cols=109 Identities=23% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCC
Q 047035 565 LQLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGN 644 (783)
Q Consensus 565 L~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 644 (783)
.+++++++|++.. +|..+ .+.|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCc-cCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777763 45443 367888888888888777888899999999999999998777777889999999999999
Q ss_pred cccccCCcchhCCCCCCEEecCCCcCcccCC
Q 047035 645 YLQGQIPIALCQLQKLGILDLSHNKLNGSIP 675 (783)
Q Consensus 645 ~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP 675 (783)
++++..|..|..+++|+.|+|++|++++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997777779999999999999999987665
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.9e-12 Score=120.63 Aligned_cols=107 Identities=21% Similarity=0.228 Sum_probs=86.2
Q ss_pred CEEeCCCcccccccccccCcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCccccCCchhccCCcCCCEEeCcCCc
Q 047035 566 QLLDLSENRLFGSIASSLNLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNY 645 (783)
Q Consensus 566 ~~L~Ls~N~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 645 (783)
+.+++++|++. .+|..+ .+.|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 56777777664 455444 2677888888888887778888889999999999999987666667889999999999999
Q ss_pred ccccCCcchhCCCCCCEEecCCCcCcccC
Q 047035 646 LQGQIPIALCQLQKLGILDLSHNKLNGSI 674 (783)
Q Consensus 646 l~~~~p~~l~~l~~L~~L~ls~N~l~g~i 674 (783)
+++..+..|..+++|+.|++++|++....
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99666666999999999999999998643
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=1.4e-10 Score=125.13 Aligned_cols=84 Identities=8% Similarity=0.125 Sum_probs=37.5
Q ss_pred CcCCCC-CCCEEEccCccCcccCCcccccCCCCCcEEEccCcc---ccccCCccccCCCCCCEEEcccccCCccCchhhc
Q 047035 194 ELAPFR-NLKVLGMRNNLLNGSVESKGICELKNLTELDLGENN---LEGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIA 269 (783)
Q Consensus 194 ~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 269 (783)
+|.+++ .|+.+.+..+ ++ .|...+|.+|++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++.....+|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 444443 3555555433 22 3444555555555555554432 33233344445555554444332 2222233444
Q ss_pred CCCCCCEEeCc
Q 047035 270 NLTSLEYLALS 280 (783)
Q Consensus 270 ~l~~L~~L~L~ 280 (783)
.+.+|+.+.+.
T Consensus 135 ~c~~L~~i~lp 145 (394)
T 4gt6_A 135 HCEELDTVTIP 145 (394)
T ss_dssp TCTTCCEEECC
T ss_pred hhccccccccc
Confidence 44444444443
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.33 E-value=8.8e-11 Score=126.63 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=63.3
Q ss_pred ccCCCC-CCCEEECcCCcCcccCC-CcCCCCCCCEEEccCcc---CcccCCcccccCCCCCcEEEccCccccccCCcccc
Q 047035 171 GLGNLT-NLEVLDLSANRISGSLT-ELAPFRNLKVLGMRNNL---LNGSVESKGICELKNLTELDLGENNLEGQLPWCLS 245 (783)
Q Consensus 171 ~l~~l~-~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~L~~n~---l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 245 (783)
+|.+++ .|+.+.+..+ ++.... +|.++.+|+.+.+..+. ++ .+...+|..+.+|+.+.+..+ +......+|.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhh
Confidence 455553 4777777543 444434 67777777777776542 32 444456677777776666443 3334445667
Q ss_pred CCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcCC
Q 047035 246 DLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSDN 282 (783)
Q Consensus 246 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 282 (783)
.+.+|+.+.+..+ +......+|..+..|+.+.+..+
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhcccccccccce-eeeecccceecccccccccccce
Confidence 7777777777543 23234455666666766666544
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=6.5e-12 Score=117.85 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=58.7
Q ss_pred cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..+ .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444 2333332 445555555555554444444 5555555555555555444445566666666666666
Q ss_pred ccccCCchhccCCcCCCEEeCcCCccccc
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQGQ 649 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 649 (783)
++.+..|..+..+++|+.|+|++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 66655555566667777777777766643
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1e-11 Score=116.90 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=60.5
Q ss_pred cEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECcCC
Q 047035 542 DVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDN 620 (783)
Q Consensus 542 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 620 (783)
+.+++++|+++ .+|..+. ++|++|+|++|++.+..|..+ .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34444444443 3443332 455555555555555545444 5555555666666655444444566677777777777
Q ss_pred ccccCCchhccCCcCCCEEeCcCCcccc
Q 047035 621 KFFGRIPDQINNHSELRVLLLRGNYLQG 648 (783)
Q Consensus 621 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 648 (783)
++.+..+..+..+++|+.|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 7765555557777777777777777763
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=4e-13 Score=142.91 Aligned_cols=185 Identities=18% Similarity=0.109 Sum_probs=87.1
Q ss_pred CCCcEEECcCccccccCCCccc-----CCCCccEEEccCccccccccccc-ccCCCCcEEEccCCcccccCCCCcCCCCC
Q 047035 467 ASLEYLDVSENNFYGHIFPTYM-----NLTQLRWLYLKNNHFTGKIKAGL-LNSHGLVVLDISNNLLSGHIPCWIGNFSY 540 (783)
Q Consensus 467 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 540 (783)
+.|+.|++++|.++......+. ..++|++|++++|.++......+ ..+++|+.|+|++|.++......++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~---- 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR---- 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----
Confidence 5677777777776543222221 22466666666666543322222 1233455555555554432222221
Q ss_pred CcEEECCCCcccccCcccc-cCCCCCCEEeCCCccccc----cccccc-CcCCCcEEEccCCcccc----cCchhhhcCC
Q 047035 541 LDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFG----SIASSL-NLSSIMHLYLQNNALSG----QIPSTLFRST 610 (783)
Q Consensus 541 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~----~~p~~~-~l~~L~~L~L~~n~l~~----~~p~~l~~l~ 610 (783)
..+ ...++|++|+|++|.++. .++..+ ..++|++|+|++|.++. .++..+...+
T Consensus 148 ----------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 148 ----------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ----------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ----------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 011 123445555555555432 122222 34455555555555542 2244455556
Q ss_pred CCcEEECcCCccccC----CchhccCCcCCCEEeCcCCcccccCCcchhCCCC-----CCEEe--cCCCcCc
Q 047035 611 ELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYLQGQIPIALCQLQK-----LGILD--LSHNKLN 671 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-----L~~L~--ls~N~l~ 671 (783)
+|+.|+|++|.+++. ++..+...++|+.|+|++|.+++.-...+..+.. |+.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 666777777666542 3333445566777777777666544444433221 55555 5555554
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.8e-13 Score=141.65 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=115.4
Q ss_pred CCCcEEEccCCcccccCCCCcC-----CCCCCcEEECCCCcccccCcccc-cCCCCCCEEeCCCccccccccccc-----
Q 047035 515 HGLVVLDISNNLLSGHIPCWIG-----NFSYLDVLLMSKNHLEGNIPVQI-NNFRQLQLLDLSENRLFGSIASSL----- 583 (783)
Q Consensus 515 ~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~----- 583 (783)
+.|+.|++++|.++......+. ..++|+.|+|++|.++......+ ..+++|++|+|++|++.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4455666666655432222222 12567777777777654332222 234578889999998865433332
Q ss_pred -CcCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCCccccc----C
Q 047035 584 -NLSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGNYLQGQ----I 650 (783)
Q Consensus 584 -~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~ 650 (783)
..+.|++|+|++|.++. .++..+..+++|++|+|++|.+.+. ++..+...++|+.|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 35789999999999974 3555667889999999999999754 356677888999999999999854 3
Q ss_pred CcchhCCCCCCEEecCCCcCcccCCcchhh
Q 047035 651 PIALCQLQKLGILDLSHNKLNGSIPSCFVN 680 (783)
Q Consensus 651 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 680 (783)
+..+...++|++|||++|+++..-...+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 445667899999999999998654444544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2.6e-10 Score=120.79 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=84.1
Q ss_pred cEEECCCC-cccccCcccccCCCCCCEEeCCC-ccccccccccc-CcCCCcEEEccCCcccccCchhhhcCCCCcEEECc
Q 047035 542 DVLLMSKN-HLEGNIPVQINNFRQLQLLDLSE-NRLFGSIASSL-NLSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLR 618 (783)
Q Consensus 542 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 618 (783)
..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..+ .+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34678887 777 5777 88888899999986 88887777777 88888888888888888888888888888888888
Q ss_pred CCccccCCchhccCCcCCCEEeCcCCccccc
Q 047035 619 DNKFFGRIPDQINNHSELRVLLLRGNYLQGQ 649 (783)
Q Consensus 619 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 649 (783)
+|++++..|..+..++ |+.|+|++|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 8888766555666555 88888888888743
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=2.4e-10 Score=121.03 Aligned_cols=103 Identities=22% Similarity=0.126 Sum_probs=68.6
Q ss_pred EEEccCc-ccccccccccccCCCCcEEEccC-CcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCC
Q 047035 495 WLYLKNN-HFTGKIKAGLLNSHGLVVLDISN-NLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSE 572 (783)
Q Consensus 495 ~L~L~~n-~l~~~~~~~l~~~~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 572 (783)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|+++++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566666 665 3555 66667777777775 777766666677777777777777777776666777777777777777
Q ss_pred cccccccccccCcCCCcEEEccCCccc
Q 047035 573 NRLFGSIASSLNLSSIMHLYLQNNALS 599 (783)
Q Consensus 573 N~l~~~~p~~~~l~~L~~L~L~~n~l~ 599 (783)
|++++..+..+....|+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 777655555553333777777777665
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=3.5e-08 Score=105.64 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=77.8
Q ss_pred ccccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCC
Q 047035 436 YSIGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSH 515 (783)
Q Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~ 515 (783)
..+..+..|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|.+|.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 34455556666665443 22 344455556666666666544 33334455666666666666443 3334445566667
Q ss_pred CCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCc
Q 047035 516 GLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSEN 573 (783)
Q Consensus 516 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 573 (783)
+|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.+|++|+.+.+..+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 7777777666666555666677777777777543 44344556777777777776543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.99 E-value=5.9e-08 Score=103.86 Aligned_cols=166 Identities=12% Similarity=0.045 Sum_probs=113.5
Q ss_pred ccCCCCCCeeeccCCcCccccChhhhhcCCCCcEEECcCccccccCCCcccCCCCccEEEccCcccccccccccccCCCC
Q 047035 438 IGEMKELFLLDLSRNKFSGDLSATSVIRCASLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNNHFTGKIKAGLLNSHGL 517 (783)
Q Consensus 438 l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~~~~L 517 (783)
+..+..+..+.+..... .+....+..+..|+.+.+..+ +......+|.++..|+.+.+..+ ++.....+|.++.+|
T Consensus 190 ~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 44455555555544322 334455667788888888654 34444567788888888888765 555556778888888
Q ss_pred cEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc-CcCCCcEEEccCC
Q 047035 518 VVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL-NLSSIMHLYLQNN 596 (783)
Q Consensus 518 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~l~~L~~L~L~~n 596 (783)
+.+.+..+ +.......|.++++|+.+.+.++.++..-..+|.+|.+|+.++|..+ +...-...| ++++|+.+.+..+
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888654 55455667888888999988888887666778888888999988754 443334455 7888888888654
Q ss_pred cccccCchhhhcCC
Q 047035 597 ALSGQIPSTLFRST 610 (783)
Q Consensus 597 ~l~~~~p~~l~~l~ 610 (783)
++..-..+|.++.
T Consensus 344 -v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 -ITLIESGAFEGSS 356 (379)
T ss_dssp -CCEECTTTTTTSS
T ss_pred -cCEEchhHhhCCC
Confidence 4434455666654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=1.5e-09 Score=114.10 Aligned_cols=59 Identities=20% Similarity=0.020 Sum_probs=30.9
Q ss_pred ccccCCCCcEEEccCCcccccCCCCcCCCCCCcEEECCCCcccccCccccc--CCCCCCEEeCC
Q 047035 510 GLLNSHGLVVLDISNNLLSGHIPCWIGNFSYLDVLLMSKNHLEGNIPVQIN--NFRQLQLLDLS 571 (783)
Q Consensus 510 ~l~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls 571 (783)
.+..+++|+.|++++|.-. .++. +. +++|+.|++..|.+.......+. .+++|++|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445566777766665211 1222 22 56666666666665533333332 45666666664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=6.1e-09 Score=109.52 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=99.4
Q ss_pred CCCCcCCCCCCcEEECCCCcccccCcccccCCCCCCEEeCCCccccccccccc---CcCCCcEEEccC--Cccccc----
Q 047035 531 IPCWIGNFSYLDVLLMSKNHLEGNIPVQINNFRQLQLLDLSENRLFGSIASSL---NLSSIMHLYLQN--NALSGQ---- 601 (783)
Q Consensus 531 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~l~~L~~L~L~~--n~l~~~---- 601 (783)
++..+..+++|+.|.+++|.-. .++. +. +++|++|++..|.+.......+ .+++|++|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345567899999999988422 2333 43 7899999999998865433333 589999999863 222111
Q ss_pred -Cchhh--hcCCCCcEEECcCCccccCCchhcc---CCcCCCEEeCcCCccccc----CCcchhCCCCCCEEecCCCcCc
Q 047035 602 -IPSTL--FRSTELLTLDLRDNKFFGRIPDQIN---NHSELRVLLLRGNYLQGQ----IPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 602 -~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
+...+ ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11222 2478999999999998765544443 578999999999999874 4445567899999999999886
Q ss_pred c
Q 047035 672 G 672 (783)
Q Consensus 672 g 672 (783)
.
T Consensus 321 d 321 (362)
T 2ra8_A 321 D 321 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=7.7e-08 Score=91.15 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=70.0
Q ss_pred cccCCCCCCEEeCCCc-ccccc----ccccc-CcCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC--
Q 047035 558 QINNFRQLQLLDLSEN-RLFGS----IASSL-NLSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR-- 625 (783)
Q Consensus 558 ~~~~l~~L~~L~Ls~N-~l~~~----~p~~~-~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~-- 625 (783)
.+...++|++|+|++| .+... +...+ ..++|++|+|++|.+.. .+...+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444455555555555 44321 12222 34556666666666542 2344555567788888888877653
Q ss_pred --CchhccCCcCCCEEeC--cCCccccc----CCcchhCCCCCCEEecCCCcCc
Q 047035 626 --IPDQINNHSELRVLLL--RGNYLQGQ----IPIALCQLQKLGILDLSHNKLN 671 (783)
Q Consensus 626 --~p~~l~~l~~L~~L~L--~~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 671 (783)
+.+.+...++|+.|+| ++|.+... +...+...++|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455666778888888 77887654 3344566688999999998874
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.6e-07 Score=88.94 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=35.7
Q ss_pred cCCCcEEEccCCccccc----CchhhhcCCCCcEEEC--cCCccccC----CchhccCCcCCCEEeCcCCccc
Q 047035 585 LSSIMHLYLQNNALSGQ----IPSTLFRSTELLTLDL--RDNKFFGR----IPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
.++|++|+|++|.+... +...+...++|++|+| ++|.+... +.+.+...++|+.|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555432 3445555566777777 66666543 2334445567777777777664
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.5e-07 Score=93.68 Aligned_cols=65 Identities=29% Similarity=0.463 Sum_probs=26.5
Q ss_pred CCCCcEEECcCCcccc--CCchhccCCcCCCEEeCcCCcccccCCcchhCCC--CCCEEecCCCcCcccCC
Q 047035 609 STELLTLDLRDNKFFG--RIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQ--KLGILDLSHNKLNGSIP 675 (783)
Q Consensus 609 l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~g~iP 675 (783)
++.|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 3344444444444433 2233333444444444444444432 1122222 44445555555544444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1e-06 Score=87.62 Aligned_cols=96 Identities=25% Similarity=0.293 Sum_probs=74.8
Q ss_pred EeCCCcccc---ccccccc-CcCCCcEEEccCCcccc--cCchhhhcCCCCcEEECcCCccccCCchhccCCc--CCCEE
Q 047035 568 LDLSENRLF---GSIASSL-NLSSIMHLYLQNNALSG--QIPSTLFRSTELLTLDLRDNKFFGRIPDQINNHS--ELRVL 639 (783)
Q Consensus 568 L~Ls~N~l~---~~~p~~~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L 639 (783)
++++.|+.. +.++... +++.|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 667777432 2222222 68999999999999997 5667888999999999999999875 3444444 99999
Q ss_pred eCcCCcccccCCc-------chhCCCCCCEEec
Q 047035 640 LLRGNYLQGQIPI-------ALCQLQKLGILDL 665 (783)
Q Consensus 640 ~L~~N~l~~~~p~-------~l~~l~~L~~L~l 665 (783)
+|++|.+.+.+|. .+..+++|+.||=
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999999987773 3678999998873
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.1e-05 Score=74.18 Aligned_cols=86 Identities=10% Similarity=-0.025 Sum_probs=60.2
Q ss_pred cCCCcEEEccCCcccccCchhhhcCCCCcEEECcCCc-cccCCchhccCC----cCCCEEeCcCCc-ccccCCcchhCCC
Q 047035 585 LSSIMHLYLQNNALSGQIPSTLFRSTELLTLDLRDNK-FFGRIPDQINNH----SELRVLLLRGNY-LQGQIPIALCQLQ 658 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~ 658 (783)
-..|++|+++++.++..--..+.++++|+.|+|++|. +++.--..+..+ ++|+.|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3457777777777665555566778888888888885 554433445553 478899998885 6654334577889
Q ss_pred CCCEEecCCCcC
Q 047035 659 KLGILDLSHNKL 670 (783)
Q Consensus 659 ~L~~L~ls~N~l 670 (783)
+|+.|++++|+-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999998863
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=1.2e-05 Score=73.91 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=15.6
Q ss_pred CCcEEECcCccccccCCCcccCCCCccEEEccCc
Q 047035 468 SLEYLDVSENNFYGHIFPTYMNLTQLRWLYLKNN 501 (783)
Q Consensus 468 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 501 (783)
.|+.||+++|.++......+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3455555555444433333444444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00057 Score=64.00 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=51.8
Q ss_pred cCCCcEEEccCCcccc----cCchhhhcCCCCcEEECcCCccccC----CchhccCCcCCCEEeCcCC---cccc----c
Q 047035 585 LSSIMHLYLQNNALSG----QIPSTLFRSTELLTLDLRDNKFFGR----IPDQINNHSELRVLLLRGN---YLQG----Q 649 (783)
Q Consensus 585 l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~~----~ 649 (783)
-+.|++|+|++|.+.. .+...+...+.|+.|+|++|.|.+. +-+.+..-+.|+.|+|++| .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3455555555555542 2344455567777777777777543 2334455567888888754 3332 2
Q ss_pred CCcchhCCCCCCEEecCCCcC
Q 047035 650 IPIALCQLQKLGILDLSHNKL 670 (783)
Q Consensus 650 ~p~~l~~l~~L~~L~ls~N~l 670 (783)
+...+..-+.|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 344566677888888887754
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.94 E-value=0.00014 Score=68.20 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=52.2
Q ss_pred cCCCCCCEEeCCCC-CCCCCCCCCCCcccCCCCCCCEEeCCCCCCCCC----CcccccCCCCCCEEEccCCcCCCCCC--
Q 047035 71 LPFQELQILDLSGN-YFDGWNENKDYDSSGSSKKLKILNLNYNNFNDS----VLPYLNTLTSLTTLNLYYNRIGGLNP-- 143 (783)
Q Consensus 71 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p-- 143 (783)
..-+.|++|+|+++ .+.......+++++..-+.|++|+|++|.+.+. +...+..-+.|++|+|++|.|.+...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567888888774 554332223335566667777777777777543 23334455677777777777654311
Q ss_pred -chhccCCCCCCeEeCCCC
Q 047035 144 -SQGLANLRNLKALNLSWN 161 (783)
Q Consensus 144 -~~~l~~l~~L~~L~L~~n 161 (783)
.+++..-+.|++|+|+++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 112344445666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.43 E-value=0.0046 Score=53.93 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEECcCCccc-cCCchhccCCcCCCEEeCcCCcccccCCcchhCCCCCCEEecCCCcCcc
Q 047035 614 TLDLRDNKFF-GRIPDQINNHSELRVLLLRGNYLQGQIPIALCQLQKLGILDLSHNKLNG 672 (783)
Q Consensus 614 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g 672 (783)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 6777777775 35665443 468888888888886666678888889999999998863
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.56 E-value=0.017 Score=50.21 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=20.2
Q ss_pred CCcEEECcCCccccCCchhccCCcCCCEEeCcCCccc
Q 047035 611 ELLTLDLRDNKFFGRIPDQINNHSELRVLLLRGNYLQ 647 (783)
Q Consensus 611 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 647 (783)
+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555444444555555666666665543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.38 E-value=32 Score=27.64 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=25.4
Q ss_pred CccCcccccCCCCCCEEeCCCCCCCCCCCCCCCcccCCCCCCCEEeCCC
Q 047035 63 PILNFSLFLPFQELQILDLSGNYFDGWNENKDYDSSGSSKKLKILNLNY 111 (783)
Q Consensus 63 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~l~~L~~L~Ls~ 111 (783)
..+...+|..++.|+.+.+-.+ ++.... .+|..|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYD----GMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCT----TSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcH----HHHhccCCccEEEEcC
Confidence 4455666777777777776543 332222 4566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.51 E-value=60 Score=25.96 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=22.7
Q ss_pred cccCCccccCCCCCCEEEcccccCCccCchhhcCCCCCCEEeCcC
Q 047035 237 EGQLPWCLSDLIGLKVLDISFNHLSGNLPSVIANLTSLEYLALSD 281 (783)
Q Consensus 237 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 281 (783)
+..-..+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333445666666666665543 3323344555555555555544
No 167
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=32.25 E-value=24 Score=19.95 Aligned_cols=19 Identities=32% Similarity=0.879 Sum_probs=13.6
Q ss_pred CCCCcCCCCCCCCccccee
Q 047035 15 ILTSWVDDGISDCCDWERV 33 (783)
Q Consensus 15 ~~~~W~~~~~~~~c~w~gv 33 (783)
.+.-|.-..+..||.|.-.
T Consensus 3 kltfw~ck~~keccgwn~c 21 (29)
T 2gx1_A 3 KLTFWKCKNKKECCGWNAC 21 (29)
T ss_dssp BCSSSCCSSTTSBSSCCCB
T ss_pred EeEEEEecCCccccccccc
Confidence 4667876555789999853
Done!