Query 047036
Match_columns 634
No_of_seqs 358 out of 1340
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2395 Protein involved in va 100.0 3E-106 8E-111 863.5 31.1 608 1-634 1-644 (644)
2 PF08553 VID27: VID27 cytoplas 100.0 1.1E-97 2E-102 849.1 43.6 495 68-632 249-771 (794)
3 COG5167 VID27 Protein involved 100.0 3.2E-82 7E-87 675.6 32.9 479 83-632 242-756 (776)
4 KOG0265 U5 snRNP-specific prot 100.0 9.1E-34 2E-38 289.5 22.6 280 255-620 47-335 (338)
5 KOG0271 Notchless-like WD40 re 100.0 1.5E-29 3.2E-34 264.9 20.2 267 258-602 160-459 (480)
6 KOG0279 G protein beta subunit 100.0 3.3E-28 7.1E-33 247.0 24.8 237 257-567 19-263 (315)
7 KOG0263 Transcription initiati 100.0 5E-27 1.1E-31 262.4 23.6 273 258-603 381-694 (707)
8 KOG0272 U4/U6 small nuclear ri 99.9 4.3E-26 9.3E-31 241.2 17.7 231 299-617 177-412 (459)
9 KOG0272 U4/U6 small nuclear ri 99.9 4.6E-26 1E-30 241.0 17.5 254 257-602 177-438 (459)
10 KOG0316 Conserved WD40 repeat- 99.9 9.1E-25 2E-29 218.1 23.5 268 255-624 17-292 (307)
11 KOG0271 Notchless-like WD40 re 99.9 5.2E-25 1.1E-29 230.9 21.2 239 255-566 115-397 (480)
12 KOG0286 G-protein beta subunit 99.9 3.7E-24 8E-29 218.7 22.6 207 258-509 100-316 (343)
13 KOG0266 WD40 repeat-containing 99.9 9.9E-24 2.1E-28 232.3 26.5 238 257-567 161-410 (456)
14 KOG0263 Transcription initiati 99.9 2E-23 4.3E-28 233.7 18.5 192 255-492 451-649 (707)
15 KOG0266 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 222.5 21.2 191 317-569 171-367 (456)
16 KOG0279 G protein beta subunit 99.9 1.7E-21 3.6E-26 198.4 24.1 183 264-492 73-262 (315)
17 KOG0295 WD40 repeat-containing 99.9 9.9E-23 2.1E-27 212.9 15.5 247 306-619 109-360 (406)
18 PLN00181 protein SPA1-RELATED; 99.9 1.2E-20 2.7E-25 220.1 32.8 242 256-566 484-738 (793)
19 cd00200 WD40 WD40 domain, foun 99.9 1.4E-19 3.1E-24 173.1 30.9 253 256-602 10-269 (289)
20 KOG0291 WD40-repeat-containing 99.9 1.5E-20 3.3E-25 209.6 25.4 252 258-566 353-612 (893)
21 KOG0281 Beta-TrCP (transducin 99.9 7.1E-22 1.5E-26 205.5 12.9 266 258-619 200-473 (499)
22 KOG0285 Pleiotropic regulator 99.9 3.6E-21 7.8E-26 200.9 18.0 203 258-509 154-361 (460)
23 KOG0291 WD40-repeat-containing 99.9 6.2E-20 1.3E-24 204.8 26.6 198 308-569 353-553 (893)
24 KOG1446 Histone H3 (Lys4) meth 99.9 3E-19 6.5E-24 184.3 29.7 279 255-625 14-305 (311)
25 KOG0285 Pleiotropic regulator 99.9 6.2E-21 1.3E-25 199.2 16.9 178 299-525 153-332 (460)
26 KOG0282 mRNA splicing factor [ 99.9 4.6E-21 1E-25 205.8 16.2 247 273-607 237-486 (503)
27 KOG0286 G-protein beta subunit 99.9 5E-20 1.1E-24 188.6 22.7 192 311-567 61-260 (343)
28 KOG0295 WD40 repeat-containing 99.8 8.4E-21 1.8E-25 198.5 15.0 203 301-564 197-404 (406)
29 KOG0315 G-protein beta subunit 99.8 3.2E-19 6.9E-24 179.7 25.3 212 315-602 50-266 (311)
30 KOG0274 Cdc4 and related F-box 99.8 2.2E-19 4.8E-24 201.6 25.5 185 273-509 228-414 (537)
31 KOG0772 Uncharacterized conser 99.8 6.8E-19 1.5E-23 190.3 24.5 267 258-607 170-469 (641)
32 cd00200 WD40 WD40 domain, foun 99.8 3E-18 6.6E-23 163.9 25.8 195 308-567 12-208 (289)
33 KOG0276 Vesicle coat complex C 99.8 3.6E-19 7.9E-24 195.6 21.5 255 299-630 57-325 (794)
34 PTZ00420 coronin; Provisional 99.8 5.1E-19 1.1E-23 199.6 23.3 147 333-509 54-210 (568)
35 PTZ00421 coronin; Provisional 99.8 9.6E-19 2.1E-23 195.0 24.7 146 334-509 53-211 (493)
36 PLN00181 protein SPA1-RELATED; 99.8 4E-18 8.7E-23 199.1 30.5 146 316-492 587-738 (793)
37 KOG0273 Beta-transducin family 99.8 7.7E-18 1.7E-22 180.8 26.6 230 258-566 238-482 (524)
38 KOG0310 Conserved WD40 repeat- 99.8 1.3E-18 2.8E-23 187.4 19.8 215 258-525 71-292 (487)
39 KOG0273 Beta-transducin family 99.8 1.9E-18 4.2E-23 185.4 21.0 182 333-566 339-523 (524)
40 KOG0292 Vesicle coat complex C 99.8 5.8E-19 1.3E-23 199.4 17.4 233 259-567 13-281 (1202)
41 KOG0274 Cdc4 and related F-box 99.8 6.5E-18 1.4E-22 189.8 25.2 228 258-569 252-485 (537)
42 KOG0284 Polyadenylation factor 99.8 6E-19 1.3E-23 186.8 14.6 205 258-509 99-307 (464)
43 PTZ00420 coronin; Provisional 99.8 2.1E-17 4.6E-22 186.6 28.1 179 272-492 50-248 (568)
44 PTZ00421 coronin; Provisional 99.8 2.7E-17 5.9E-22 183.4 28.2 205 256-502 76-296 (493)
45 KOG0292 Vesicle coat complex C 99.8 1.1E-18 2.4E-23 197.1 16.3 249 301-619 13-276 (1202)
46 KOG0282 mRNA splicing factor [ 99.8 1.4E-18 3.1E-23 186.9 16.0 204 290-566 206-415 (503)
47 KOG0281 Beta-TrCP (transducin 99.8 4.9E-19 1.1E-23 184.5 11.1 176 319-566 209-388 (499)
48 KOG0283 WD40 repeat-containing 99.8 2.9E-17 6.3E-22 185.6 25.3 186 316-567 379-577 (712)
49 KOG0301 Phospholipase A2-activ 99.8 9.9E-18 2.2E-22 186.2 20.6 270 258-626 17-291 (745)
50 KOG0293 WD40 repeat-containing 99.8 2.9E-17 6.3E-22 174.3 23.1 259 255-602 224-490 (519)
51 KOG0316 Conserved WD40 repeat- 99.8 1.7E-17 3.6E-22 166.4 20.1 193 306-566 18-213 (307)
52 KOG0306 WD40-repeat-containing 99.8 4.6E-17 1E-21 182.1 22.6 276 258-617 376-658 (888)
53 KOG0319 WD40-repeat-containing 99.8 1.2E-17 2.6E-22 186.5 17.7 150 300-489 466-616 (775)
54 KOG0276 Vesicle coat complex C 99.8 2.7E-17 5.9E-22 181.0 19.9 152 301-492 101-257 (794)
55 KOG0300 WD40 repeat-containing 99.8 1.5E-17 3.3E-22 171.9 16.9 232 333-634 170-431 (481)
56 KOG0313 Microtubule binding pr 99.8 1.1E-16 2.5E-21 168.5 23.6 222 319-618 161-413 (423)
57 KOG0315 G-protein beta subunit 99.8 1E-16 2.2E-21 161.7 21.4 207 255-508 83-300 (311)
58 KOG0288 WD40 repeat protein Ti 99.7 6E-18 1.3E-22 179.4 12.6 241 257-574 177-422 (459)
59 KOG0640 mRNA cleavage stimulat 99.7 6.2E-17 1.3E-21 167.1 19.2 253 255-570 112-387 (430)
60 KOG0313 Microtubule binding pr 99.7 4.7E-17 1E-21 171.3 18.7 151 307-491 262-417 (423)
61 KOG0319 WD40-repeat-containing 99.7 1.7E-17 3.7E-22 185.3 15.1 216 318-604 378-599 (775)
62 KOG0269 WD40 repeat-containing 99.7 3.4E-17 7.4E-22 183.6 16.6 201 257-492 43-250 (839)
63 KOG0641 WD40 repeat protein [G 99.7 7.9E-16 1.7E-20 153.7 23.9 249 255-566 89-349 (350)
64 KOG0277 Peroxisomal targeting 99.7 5.1E-17 1.1E-21 164.3 15.6 183 257-492 74-265 (311)
65 KOG0265 U5 snRNP-specific prot 99.7 9E-17 2E-21 165.3 17.6 187 314-567 56-247 (338)
66 KOG0283 WD40 repeat-containing 99.7 1.1E-16 2.3E-21 181.1 18.9 171 345-569 361-537 (712)
67 KOG0308 Conserved WD40 repeat- 99.7 7.2E-17 1.6E-21 178.4 17.0 224 317-620 37-282 (735)
68 KOG0318 WD40 repeat stress pro 99.7 3.1E-15 6.7E-20 162.7 28.9 204 258-505 61-274 (603)
69 KOG0275 Conserved WD40 repeat- 99.7 2E-17 4.4E-22 171.3 11.2 161 301-506 217-388 (508)
70 KOG0277 Peroxisomal targeting 99.7 1.1E-16 2.3E-21 162.0 16.1 196 301-566 64-265 (311)
71 KOG0275 Conserved WD40 repeat- 99.7 1.4E-16 2.9E-21 165.2 17.1 250 264-601 223-486 (508)
72 KOG0264 Nucleosome remodeling 99.7 3.2E-16 6.9E-21 167.8 19.1 194 333-569 200-407 (422)
73 KOG0284 Polyadenylation factor 99.7 9E-17 2E-21 170.4 14.5 188 258-492 141-337 (464)
74 KOG0308 Conserved WD40 repeat- 99.7 1.4E-16 2.9E-21 176.3 12.6 168 314-508 82-255 (735)
75 KOG0301 Phospholipase A2-activ 99.7 6.9E-16 1.5E-20 171.7 17.7 173 320-566 115-288 (745)
76 KOG0645 WD40 repeat protein [G 99.7 6.2E-15 1.3E-19 150.3 23.1 202 301-569 18-228 (312)
77 KOG0296 Angio-associated migra 99.7 1.4E-14 3E-19 152.4 25.5 249 253-568 62-318 (399)
78 KOG0267 Microtubule severing p 99.7 6.1E-17 1.3E-21 180.6 7.7 181 267-492 41-226 (825)
79 KOG0645 WD40 repeat protein [G 99.7 6.4E-15 1.4E-19 150.2 21.3 155 298-491 62-224 (312)
80 KOG0310 Conserved WD40 repeat- 99.7 1.7E-15 3.6E-20 163.5 17.5 268 257-628 30-305 (487)
81 KOG1407 WD40 repeat protein [F 99.7 4.4E-15 9.6E-20 150.8 18.8 209 256-492 21-261 (313)
82 KOG0296 Angio-associated migra 99.7 1.3E-14 2.7E-19 152.6 22.7 240 257-566 108-398 (399)
83 KOG0264 Nucleosome remodeling 99.7 3.3E-15 7.2E-20 160.1 18.7 217 333-607 147-385 (422)
84 KOG0267 Microtubule severing p 99.7 1.3E-16 2.9E-21 177.9 8.1 184 317-566 40-226 (825)
85 KOG0318 WD40 repeat stress pro 99.6 2.3E-13 5E-18 148.3 30.7 289 258-605 150-498 (603)
86 KOG0278 Serine/threonine kinas 99.6 4.6E-15 1E-19 150.0 15.5 191 257-494 102-299 (334)
87 KOG0289 mRNA splicing factor [ 99.6 1.1E-14 2.5E-19 155.5 19.2 147 315-492 271-419 (506)
88 KOG0640 mRNA cleavage stimulat 99.6 3.9E-15 8.4E-20 154.0 14.7 197 301-566 116-335 (430)
89 KOG0302 Ribosome Assembly prot 99.6 2E-14 4.4E-19 151.6 18.9 189 333-561 234-434 (440)
90 KOG0270 WD40 repeat-containing 99.6 1.5E-14 3.3E-19 154.8 18.2 152 310-492 248-404 (463)
91 KOG4283 Transcription-coupled 99.6 9.6E-14 2.1E-18 143.1 22.9 207 254-492 44-276 (397)
92 KOG0643 Translation initiation 99.6 5.2E-14 1.1E-18 143.5 20.6 160 313-508 60-232 (327)
93 KOG0289 mRNA splicing factor [ 99.6 3.2E-14 6.8E-19 152.2 19.1 188 317-570 231-423 (506)
94 KOG0269 WD40 repeat-containing 99.6 5.2E-15 1.1E-19 166.3 13.0 197 257-509 101-310 (839)
95 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 3E-12 6.6E-17 127.8 31.3 139 333-505 53-196 (300)
96 KOG0973 Histone transcription 99.6 6.2E-14 1.3E-18 162.4 20.6 165 344-525 60-232 (942)
97 KOG0300 WD40 repeat-containing 99.6 1.8E-14 3.8E-19 149.4 13.5 144 317-492 284-428 (481)
98 KOG1407 WD40 repeat protein [F 99.6 1.5E-13 3.2E-18 139.9 18.7 218 307-607 22-284 (313)
99 KOG1446 Histone H3 (Lys4) meth 99.6 7.7E-13 1.7E-17 137.2 24.3 148 311-493 20-171 (311)
100 KOG0321 WD40 repeat-containing 99.6 2E-13 4.2E-18 151.3 20.6 204 257-492 65-301 (720)
101 KOG0647 mRNA export protein (c 99.5 1.9E-13 4.1E-18 141.2 18.4 151 300-492 30-184 (347)
102 KOG0278 Serine/threonine kinas 99.5 5.9E-14 1.3E-18 142.1 13.8 264 294-619 10-293 (334)
103 KOG0299 U3 snoRNP-associated p 99.5 1.4E-13 3.1E-18 148.0 17.4 190 257-492 204-410 (479)
104 KOG0305 Anaphase promoting com 99.5 2.8E-13 6E-18 149.7 18.8 145 314-492 226-376 (484)
105 KOG0299 U3 snoRNP-associated p 99.5 1.5E-13 3.2E-18 147.8 15.9 187 314-567 151-357 (479)
106 KOG1539 WD repeat protein [Gen 99.5 4E-13 8.8E-18 152.3 20.1 231 256-570 412-652 (910)
107 KOG4283 Transcription-coupled 99.5 3.3E-13 7.1E-18 139.2 17.6 206 315-567 54-277 (397)
108 KOG0294 WD40 repeat-containing 99.5 4.6E-13 9.9E-18 139.0 18.0 207 255-493 45-282 (362)
109 KOG0305 Anaphase promoting com 99.5 2.9E-13 6.2E-18 149.6 17.7 177 333-568 197-378 (484)
110 KOG0639 Transducin-like enhanc 99.5 3E-13 6.4E-18 146.7 16.9 148 310-492 514-663 (705)
111 KOG0646 WD40 repeat protein [G 99.5 3.4E-13 7.4E-18 145.3 16.9 160 307-492 83-247 (476)
112 KOG0293 WD40 repeat-containing 99.5 6.5E-13 1.4E-17 141.6 18.7 149 303-492 230-384 (519)
113 KOG0772 Uncharacterized conser 99.5 1.2E-12 2.5E-17 142.6 20.9 158 301-492 272-445 (641)
114 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 2.7E-12 5.9E-17 128.1 22.3 139 318-492 2-145 (300)
115 KOG0288 WD40 repeat protein Ti 99.5 1.8E-13 3.8E-18 145.8 14.2 140 320-489 315-458 (459)
116 KOG2096 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 134.9 21.2 238 257-564 134-400 (420)
117 KOG4328 WD40 protein [Function 99.5 7.2E-13 1.6E-17 142.6 18.7 199 256-492 187-399 (498)
118 KOG0306 WD40-repeat-containing 99.5 5.8E-13 1.3E-17 149.7 17.8 150 301-491 512-663 (888)
119 KOG1036 Mitotic spindle checkp 99.5 1.7E-12 3.7E-17 134.4 19.3 216 318-604 26-284 (323)
120 KOG0643 Translation initiation 99.5 3.9E-12 8.4E-17 130.0 20.2 198 306-567 11-221 (327)
121 KOG0646 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 140.0 18.5 202 257-505 83-316 (476)
122 KOG2919 Guanine nucleotide-bin 99.5 1.1E-12 2.5E-17 136.5 16.3 257 257-568 50-329 (406)
123 KOG2096 WD40 repeat protein [G 99.5 6.1E-12 1.3E-16 131.0 20.7 245 255-567 86-361 (420)
124 KOG0294 WD40 repeat-containing 99.5 2.5E-12 5.4E-17 133.7 17.5 214 346-619 36-277 (362)
125 KOG1274 WD40 repeat protein [G 99.4 4.8E-12 1E-16 144.9 20.7 211 310-567 18-263 (933)
126 KOG0641 WD40 repeat protein [G 99.4 6.8E-11 1.5E-15 118.7 26.2 231 313-617 97-343 (350)
127 KOG0973 Histone transcription 99.4 7.4E-13 1.6E-17 153.6 14.1 169 347-565 6-200 (942)
128 KOG1274 WD40 repeat protein [G 99.4 7.4E-12 1.6E-16 143.4 21.3 199 258-492 59-262 (933)
129 KOG1332 Vesicle coat complex C 99.4 4.6E-12 1E-16 128.1 16.8 193 318-566 24-241 (299)
130 KOG1188 WD40 repeat protein [G 99.4 2.7E-12 5.9E-17 134.4 15.4 138 333-492 50-196 (376)
131 KOG1408 WD40 repeat protein [F 99.4 1.5E-12 3.3E-17 145.5 13.6 211 301-566 463-713 (1080)
132 KOG0647 mRNA export protein (c 99.4 7.7E-12 1.7E-16 129.4 15.4 112 358-492 30-145 (347)
133 KOG1539 WD repeat protein [Gen 99.4 1.1E-11 2.3E-16 140.9 17.7 194 254-491 447-647 (910)
134 KOG1034 Transcriptional repres 99.4 4.5E-12 9.8E-17 132.3 13.3 190 333-567 115-338 (385)
135 KOG0302 Ribosome Assembly prot 99.4 1.1E-11 2.5E-16 131.1 16.1 138 273-451 234-379 (440)
136 COG2319 FOG: WD40 repeat [Gene 99.3 2.3E-10 4.9E-15 113.5 23.2 132 333-492 134-271 (466)
137 KOG0268 Sof1-like rRNA process 99.3 5.2E-12 1.1E-16 133.1 10.6 150 301-492 191-345 (433)
138 KOG1332 Vesicle coat complex C 99.3 4E-11 8.6E-16 121.5 16.4 193 256-492 23-241 (299)
139 KOG1273 WD40 repeat protein [G 99.3 2.4E-11 5.1E-16 126.5 14.5 222 301-573 27-292 (405)
140 KOG0268 Sof1-like rRNA process 99.3 2.1E-11 4.6E-16 128.6 13.9 133 334-492 168-302 (433)
141 KOG0303 Actin-binding protein 99.3 1.7E-11 3.6E-16 130.5 12.4 142 348-521 76-226 (472)
142 KOG1034 Transcriptional repres 99.3 4.5E-11 9.7E-16 125.0 15.2 229 300-570 41-283 (385)
143 KOG0639 Transducin-like enhanc 99.3 2.3E-11 5E-16 132.3 12.9 196 255-492 419-622 (705)
144 COG2319 FOG: WD40 repeat [Gene 99.3 9.4E-10 2E-14 109.1 23.1 178 333-569 87-274 (466)
145 KOG1517 Guanine nucleotide bin 99.3 2.9E-10 6.2E-15 131.9 20.9 242 264-566 1121-1381(1387)
146 KOG0649 WD40 repeat protein [G 99.3 1.4E-10 3E-15 117.6 16.2 164 308-573 117-281 (325)
147 KOG0270 WD40 repeat-containing 99.2 1.5E-10 3.2E-15 124.7 14.7 191 314-567 189-405 (463)
148 KOG2321 WD40 repeat protein [G 99.2 1.6E-10 3.4E-15 127.5 14.5 166 310-502 139-308 (703)
149 KOG4378 Nuclear protein COP1 [ 99.2 4.8E-10 1E-14 122.1 17.3 197 333-603 101-302 (673)
150 KOG0771 Prolactin regulatory e 99.2 2E-10 4.4E-15 122.9 14.0 171 304-492 143-354 (398)
151 KOG1408 WD40 repeat protein [F 99.2 5E-10 1.1E-14 125.8 17.4 235 302-574 320-587 (1080)
152 KOG0321 WD40 repeat-containing 99.2 5.1E-10 1.1E-14 124.7 17.0 193 333-572 74-307 (720)
153 KOG1063 RNA polymerase II elon 99.2 3.4E-10 7.3E-15 127.0 15.0 220 333-565 34-296 (764)
154 KOG1009 Chromatin assembly com 99.2 1E-09 2.2E-14 117.4 17.4 142 319-492 28-195 (434)
155 PRK01742 tolB translocation pr 99.2 2.1E-09 4.7E-14 117.7 20.4 126 333-492 228-361 (429)
156 KOG4378 Nuclear protein COP1 [ 99.1 1.6E-09 3.4E-14 118.1 18.1 198 332-607 56-263 (673)
157 KOG4328 WD40 protein [Function 99.1 1.7E-09 3.7E-14 117.0 17.7 202 301-566 190-399 (498)
158 KOG2445 Nuclear pore complex c 99.1 3E-09 6.5E-14 110.8 18.7 225 350-634 10-259 (361)
159 KOG2048 WD40 repeat protein [G 99.1 9.2E-09 2E-13 115.5 23.8 206 258-510 28-247 (691)
160 KOG2048 WD40 repeat protein [G 99.1 1.2E-08 2.6E-13 114.6 24.5 153 308-492 28-184 (691)
161 KOG1036 Mitotic spindle checkp 99.1 1.3E-09 2.8E-14 113.3 15.6 108 358-492 16-124 (323)
162 KOG1538 Uncharacterized conser 99.1 1.5E-09 3.2E-14 121.3 15.2 215 301-571 16-257 (1081)
163 PF08662 eIF2A: Eukaryotic tra 99.1 9.1E-09 2E-13 101.8 18.1 126 334-491 40-178 (194)
164 KOG1445 Tumor-specific antigen 99.1 1.3E-09 2.8E-14 121.3 13.0 137 333-492 603-750 (1012)
165 KOG1007 WD repeat protein TSSC 99.1 1.4E-09 3.1E-14 112.4 12.5 154 301-491 174-360 (370)
166 PRK11028 6-phosphogluconolacto 99.0 8.1E-08 1.8E-12 100.6 25.8 156 311-492 85-258 (330)
167 PRK01742 tolB translocation pr 99.0 9.5E-09 2.1E-13 112.7 18.8 130 332-492 183-322 (429)
168 KOG0303 Actin-binding protein 99.0 7.5E-09 1.6E-13 110.6 17.0 198 255-492 81-294 (472)
169 KOG2055 WD40 repeat protein [G 99.0 8.6E-09 1.9E-13 111.8 16.9 203 299-572 215-423 (514)
170 KOG2106 Uncharacterized conser 99.0 8.2E-09 1.8E-13 112.9 16.0 142 312-490 375-519 (626)
171 KOG0307 Vesicle coat complex C 99.0 1.6E-09 3.5E-14 126.9 11.1 143 333-502 139-290 (1049)
172 KOG0642 Cell-cycle nuclear pro 99.0 1.6E-09 3.5E-14 119.4 10.5 128 335-492 281-426 (577)
173 KOG1517 Guanine nucleotide bin 99.0 4.5E-08 9.7E-13 114.2 21.4 189 265-493 1076-1288(1387)
174 KOG1273 WD40 repeat protein [G 99.0 7.9E-09 1.7E-13 108.0 13.4 88 360-473 28-116 (405)
175 KOG2445 Nuclear pore complex c 99.0 7.7E-08 1.7E-12 100.5 20.6 204 315-568 23-258 (361)
176 KOG1007 WD repeat protein TSSC 98.9 2.4E-08 5.3E-13 103.5 16.6 135 333-492 144-289 (370)
177 KOG0322 G-protein beta subunit 98.9 3.2E-09 7E-14 108.7 9.4 149 314-491 161-322 (323)
178 KOG2919 Guanine nucleotide-bin 98.9 2.1E-08 4.6E-13 105.2 15.3 190 258-482 161-359 (406)
179 KOG1188 WD40 repeat protein [G 98.9 3.4E-08 7.3E-13 104.2 16.7 155 318-505 85-251 (376)
180 PRK11028 6-phosphogluconolacto 98.9 2.9E-07 6.3E-12 96.5 23.3 197 261-492 85-304 (330)
181 KOG1310 WD40 repeat protein [G 98.9 3.4E-08 7.3E-13 109.0 16.3 218 308-566 53-303 (758)
182 KOG2110 Uncharacterized conser 98.9 1.4E-07 3.1E-12 100.3 20.1 156 305-492 85-248 (391)
183 KOG1063 RNA polymerase II elon 98.9 5.1E-08 1.1E-12 109.8 17.4 190 258-490 161-389 (764)
184 KOG0649 WD40 repeat protein [G 98.9 1.2E-07 2.7E-12 96.5 18.1 205 302-567 15-236 (325)
185 KOG2111 Uncharacterized conser 98.8 6.5E-07 1.4E-11 94.0 23.2 155 258-451 97-257 (346)
186 KOG2110 Uncharacterized conser 98.8 3.7E-07 8E-12 97.2 21.3 180 333-571 68-253 (391)
187 KOG2106 Uncharacterized conser 98.8 4.1E-07 9E-12 99.9 22.1 143 315-490 211-396 (626)
188 KOG1272 WD40-repeat-containing 98.8 1.7E-08 3.7E-13 109.7 11.3 196 333-603 191-388 (545)
189 KOG0650 WD40 repeat nucleolar 98.8 1.7E-07 3.6E-12 104.5 19.1 237 319-620 414-677 (733)
190 KOG1310 WD40 repeat protein [G 98.8 3.9E-09 8.5E-14 116.2 6.4 130 333-492 35-178 (758)
191 KOG0644 Uncharacterized conser 98.8 9.7E-10 2.1E-14 125.2 1.7 120 343-492 180-300 (1113)
192 KOG2055 WD40 repeat protein [G 98.8 7.4E-08 1.6E-12 104.6 15.7 147 314-492 312-467 (514)
193 KOG0642 Cell-cycle nuclear pro 98.8 5.6E-08 1.2E-12 107.5 14.9 196 273-492 316-561 (577)
194 KOG0771 Prolactin regulatory e 98.8 1.2E-08 2.7E-13 109.5 9.4 111 425-565 148-263 (398)
195 PRK03629 tolB translocation pr 98.8 1E-06 2.2E-11 97.0 24.6 128 333-492 223-363 (429)
196 KOG1445 Tumor-specific antigen 98.8 1.5E-08 3.3E-13 112.9 9.7 141 345-509 71-214 (1012)
197 KOG1009 Chromatin assembly com 98.8 2.9E-08 6.3E-13 106.4 11.3 131 348-507 9-164 (434)
198 KOG0290 Conserved WD40 repeat- 98.8 1.9E-07 4.1E-12 97.0 16.7 185 334-570 122-322 (364)
199 KOG0974 WD-repeat protein WDR6 98.8 1.3E-07 2.8E-12 110.5 16.7 188 255-492 98-288 (967)
200 PRK03629 tolB translocation pr 98.8 1.6E-06 3.5E-11 95.4 24.0 140 333-508 267-417 (429)
201 KOG3881 Uncharacterized conser 98.8 1.5E-07 3.2E-12 100.7 15.1 137 333-492 173-320 (412)
202 KOG0644 Uncharacterized conser 98.7 2.4E-08 5.2E-13 114.2 9.3 150 306-491 191-345 (1113)
203 KOG1272 WD40-repeat-containing 98.7 1.4E-08 3E-13 110.3 7.1 156 292-490 204-360 (545)
204 KOG1240 Protein kinase contain 98.7 9.8E-08 2.1E-12 112.8 14.3 135 338-493 1034-1226(1431)
205 KOG2395 Protein involved in va 98.7 2.4E-07 5.2E-12 102.4 16.0 43 584-633 579-621 (644)
206 KOG0290 Conserved WD40 repeat- 98.7 1.9E-07 4.1E-12 97.1 14.3 191 269-492 117-318 (364)
207 PRK05137 tolB translocation pr 98.7 2E-06 4.4E-11 94.4 22.5 129 333-491 226-365 (435)
208 PRK04922 tolB translocation pr 98.7 2.2E-06 4.8E-11 94.2 22.7 130 333-492 228-368 (433)
209 KOG2111 Uncharacterized conser 98.7 1.8E-06 3.8E-11 90.8 20.4 242 256-567 6-257 (346)
210 KOG4547 WD40 repeat-containing 98.7 3.4E-07 7.4E-12 101.9 15.7 148 310-492 63-220 (541)
211 PRK02889 tolB translocation pr 98.7 6.7E-06 1.5E-10 90.4 25.4 130 333-492 220-360 (427)
212 KOG0974 WD-repeat protein WDR6 98.6 3.4E-07 7.4E-12 107.0 15.0 159 314-510 97-259 (967)
213 PRK04922 tolB translocation pr 98.6 2.3E-06 5E-11 94.0 20.8 129 332-490 183-320 (433)
214 PF08662 eIF2A: Eukaryotic tra 98.6 8.3E-07 1.8E-11 87.9 15.6 133 274-451 38-180 (194)
215 KOG4227 WD40 repeat protein [G 98.6 2E-06 4.3E-11 92.3 19.1 200 257-491 58-273 (609)
216 PRK02889 tolB translocation pr 98.6 2.1E-06 4.6E-11 94.3 19.9 130 333-492 176-314 (427)
217 PRK05137 tolB translocation pr 98.6 4.7E-06 1E-10 91.5 22.4 129 333-491 182-321 (435)
218 KOG0307 Vesicle coat complex C 98.6 1.6E-07 3.5E-12 110.6 11.2 148 318-493 174-328 (1049)
219 KOG3881 Uncharacterized conser 98.6 1.9E-06 4.2E-11 92.3 18.3 197 314-567 113-321 (412)
220 KOG4227 WD40 repeat protein [G 98.6 3.4E-07 7.4E-12 98.0 12.3 182 347-584 50-242 (609)
221 KOG0650 WD40 repeat nucleolar 98.6 9.2E-08 2E-12 106.5 7.6 146 312-489 573-732 (733)
222 KOG1587 Cytoplasmic dynein int 98.6 3.1E-06 6.7E-11 96.3 19.9 167 301-492 246-428 (555)
223 KOG1523 Actin-related protein 98.5 2E-06 4.4E-11 90.4 13.8 164 305-495 10-179 (361)
224 PF02239 Cytochrom_D1: Cytochr 98.5 1.1E-05 2.4E-10 87.7 19.6 132 333-492 16-158 (369)
225 KOG1963 WD40 repeat protein [G 98.4 2.9E-06 6.2E-11 98.1 15.3 130 333-491 181-321 (792)
226 TIGR02800 propeller_TolB tol-p 98.4 7.5E-06 1.6E-10 88.1 17.4 130 333-492 214-354 (417)
227 PLN02919 haloacid dehalogenase 98.4 2.8E-05 6.2E-10 94.8 24.0 166 306-492 684-888 (1057)
228 KOG2394 WD40 protein DMR-N9 [G 98.4 9E-07 1.9E-11 97.9 9.8 87 361-472 296-383 (636)
229 KOG1524 WD40 repeat-containing 98.4 1.4E-05 3E-10 88.7 17.6 138 307-491 147-285 (737)
230 KOG1963 WD40 repeat protein [G 98.4 2.5E-05 5.4E-10 90.5 20.5 199 333-569 37-284 (792)
231 TIGR02800 propeller_TolB tol-p 98.4 3.5E-05 7.6E-10 83.0 20.6 129 333-491 170-309 (417)
232 KOG1538 Uncharacterized conser 98.4 2.1E-05 4.6E-10 88.9 19.0 206 258-493 15-294 (1081)
233 KOG2139 WD40 repeat protein [G 98.3 5.1E-05 1.1E-09 81.2 20.5 145 306-485 196-367 (445)
234 KOG1240 Protein kinase contain 98.3 0.00013 2.8E-09 87.4 23.4 264 256-567 1051-1335(1431)
235 PRK04792 tolB translocation pr 98.3 0.00017 3.6E-09 80.2 23.5 125 333-489 242-377 (448)
236 PF00400 WD40: WD domain, G-be 98.2 1.5E-06 3.3E-11 63.1 4.7 36 455-490 3-39 (39)
237 PRK00178 tolB translocation pr 98.2 0.00015 3.3E-09 79.1 21.8 129 333-491 179-318 (430)
238 PRK00178 tolB translocation pr 98.2 0.00021 4.5E-09 78.1 22.5 128 333-492 223-363 (430)
239 KOG2394 WD40 protein DMR-N9 [G 98.2 7.4E-06 1.6E-10 90.8 11.1 80 424-508 293-374 (636)
240 KOG0280 Uncharacterized conser 98.2 3.7E-05 8E-10 80.5 15.2 134 333-492 143-284 (339)
241 KOG2139 WD40 repeat protein [G 98.2 2.3E-05 4.9E-10 83.9 13.9 140 333-490 120-266 (445)
242 KOG1334 WD40 repeat protein [G 98.2 3.3E-05 7.2E-10 85.0 14.6 150 318-492 200-366 (559)
243 PF02239 Cytochrom_D1: Cytochr 98.2 0.00034 7.3E-09 76.2 22.5 154 313-492 44-202 (369)
244 PLN02919 haloacid dehalogenase 98.2 0.00077 1.7E-08 82.6 27.9 168 305-492 624-833 (1057)
245 PRK01029 tolB translocation pr 98.2 0.00024 5.1E-09 78.7 21.6 132 333-492 211-359 (428)
246 PF00400 WD40: WD domain, G-be 98.1 7E-06 1.5E-10 59.5 6.2 39 343-391 1-39 (39)
247 KOG2315 Predicted translation 98.0 0.00042 9.1E-09 77.6 20.5 130 332-492 250-390 (566)
248 KOG1334 WD40 repeat protein [G 98.0 7.3E-05 1.6E-09 82.4 13.2 253 308-612 145-413 (559)
249 PF10282 Lactonase: Lactonase, 98.0 0.0025 5.4E-08 68.3 24.7 214 255-492 86-322 (345)
250 KOG0322 G-protein beta subunit 97.9 5.1E-05 1.1E-09 78.5 10.4 66 360-449 256-322 (323)
251 PRK04792 tolB translocation pr 97.9 0.00077 1.7E-08 75.0 20.5 129 333-491 198-337 (448)
252 KOG1354 Serine/threonine prote 97.9 0.00029 6.2E-09 75.3 15.6 120 376-508 176-314 (433)
253 KOG1523 Actin-related protein 97.9 0.00042 9.1E-09 73.4 15.6 194 260-492 15-236 (361)
254 PRK01029 tolB translocation pr 97.9 0.0011 2.4E-08 73.5 19.8 132 334-492 258-403 (428)
255 KOG4547 WD40 repeat-containing 97.8 0.00027 5.9E-09 79.3 14.2 143 258-451 72-221 (541)
256 KOG2695 WD40 repeat protein [G 97.8 4.5E-05 9.7E-10 81.3 7.4 139 333-504 234-384 (425)
257 KOG3914 WD repeat protein WDR4 97.8 0.00028 6E-09 76.3 13.3 107 377-505 124-232 (390)
258 KOG2321 WD40 repeat protein [G 97.8 0.00078 1.7E-08 75.8 17.0 155 310-492 56-258 (703)
259 KOG1524 WD40 repeat-containing 97.8 0.00011 2.3E-09 81.9 10.1 173 257-487 76-250 (737)
260 KOG2695 WD40 repeat protein [G 97.8 5.9E-05 1.3E-09 80.4 7.7 146 379-574 228-381 (425)
261 COG4946 Uncharacterized protei 97.8 0.0037 8.1E-08 69.3 21.3 141 315-492 330-477 (668)
262 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.012 2.7E-07 64.0 25.3 74 425-504 251-338 (352)
263 KOG1587 Cytoplasmic dynein int 97.7 0.00076 1.6E-08 77.2 15.5 123 345-492 390-516 (555)
264 KOG1275 PAB-dependent poly(A) 97.6 0.00084 1.8E-08 78.7 13.6 146 310-490 180-340 (1118)
265 KOG3914 WD repeat protein WDR4 97.5 0.00073 1.6E-08 73.1 12.1 121 307-459 110-231 (390)
266 KOG4190 Uncharacterized conser 97.5 0.00047 1E-08 77.0 9.6 145 333-504 757-914 (1034)
267 PF08450 SGL: SMP-30/Gluconola 97.3 0.1 2.2E-06 52.7 23.9 149 309-492 4-164 (246)
268 PRK04043 tolB translocation pr 97.3 0.053 1.2E-06 60.2 23.4 119 333-482 213-338 (419)
269 PF10282 Lactonase: Lactonase, 97.3 0.094 2E-06 56.2 24.5 163 306-492 88-275 (345)
270 TIGR03300 assembly_YfgL outer 97.3 0.0026 5.7E-08 68.1 12.6 126 333-489 251-376 (377)
271 COG5170 CDC55 Serine/threonine 97.2 0.0013 2.8E-08 69.7 9.2 184 267-493 101-310 (460)
272 KOG1064 RAVE (regulator of V-A 97.2 0.0015 3.2E-08 81.1 10.6 119 333-492 2273-2398(2439)
273 KOG1354 Serine/threonine prote 97.2 0.0069 1.5E-07 65.0 14.3 169 256-451 167-360 (433)
274 PF13360 PQQ_2: PQQ-like domai 97.2 0.0071 1.5E-07 59.6 13.4 141 333-507 3-151 (238)
275 TIGR03300 assembly_YfgL outer 97.2 0.021 4.5E-07 61.3 17.8 141 333-505 200-347 (377)
276 PRK02888 nitrous-oxide reducta 97.1 0.022 4.8E-07 65.9 18.5 199 333-566 215-485 (635)
277 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.24 5.3E-06 54.1 25.3 56 333-396 77-139 (352)
278 KOG0309 Conserved WD40 repeat- 97.1 0.0017 3.8E-08 74.8 8.9 156 361-567 73-233 (1081)
279 KOG4190 Uncharacterized conser 97.0 0.0021 4.5E-08 72.0 8.8 120 345-493 727-860 (1034)
280 KOG4532 WD40-like repeat conta 97.0 0.074 1.6E-06 55.9 19.0 253 301-633 71-333 (344)
281 KOG4497 Uncharacterized conser 97.0 0.016 3.5E-07 62.1 14.3 146 312-490 55-238 (447)
282 COG2706 3-carboxymuconate cycl 96.9 0.5 1.1E-05 51.2 25.4 222 264-520 98-344 (346)
283 KOG0280 Uncharacterized conser 96.9 0.0069 1.5E-07 63.9 10.9 108 362-492 128-241 (339)
284 PRK04043 tolB translocation pr 96.9 0.065 1.4E-06 59.5 19.0 115 333-480 257-384 (419)
285 PF13360 PQQ_2: PQQ-like domai 96.8 0.39 8.5E-06 47.3 22.4 141 333-492 86-230 (238)
286 KOG1409 Uncharacterized conser 96.8 0.0058 1.3E-07 65.6 9.8 93 334-451 178-271 (404)
287 smart00320 WD40 WD40 repeats. 96.7 0.0023 4.9E-08 42.3 3.8 35 456-490 5-40 (40)
288 PF07433 DUF1513: Protein of u 96.7 0.32 7E-06 52.1 21.5 153 304-492 57-247 (305)
289 KOG4532 WD40-like repeat conta 96.6 0.057 1.2E-06 56.7 15.0 137 332-492 137-282 (344)
290 KOG0309 Conserved WD40 repeat- 96.6 0.0023 5E-08 73.8 4.8 133 335-491 93-231 (1081)
291 PF08553 VID27: VID27 cytoplas 96.5 0.17 3.8E-06 60.3 19.9 198 380-622 499-714 (794)
292 PF15492 Nbas_N: Neuroblastoma 96.5 0.52 1.1E-05 49.8 21.0 31 462-492 228-259 (282)
293 smart00320 WD40 WD40 repeats. 96.5 0.0088 1.9E-07 39.4 5.5 39 343-391 2-40 (40)
294 KOG1409 Uncharacterized conser 96.5 0.1 2.2E-06 56.4 15.8 177 265-492 37-227 (404)
295 COG2706 3-carboxymuconate cycl 96.4 0.27 5.9E-06 53.2 18.9 163 332-524 15-202 (346)
296 PF08450 SGL: SMP-30/Gluconola 96.4 0.52 1.1E-05 47.5 20.3 157 307-502 42-218 (246)
297 PF11768 DUF3312: Protein of u 96.3 0.011 2.3E-07 67.1 7.8 70 420-492 258-329 (545)
298 KOG1064 RAVE (regulator of V-A 96.1 0.029 6.2E-07 70.4 10.9 139 319-492 2222-2366(2439)
299 PF04762 IKI3: IKI3 family; I 96.1 1.8 3.9E-05 53.1 25.7 67 425-491 260-332 (928)
300 KOG1275 PAB-dependent poly(A) 96.0 0.095 2.1E-06 62.3 13.9 143 311-492 142-296 (1118)
301 KOG4714 Nucleoporin [Nuclear s 96.0 0.0074 1.6E-07 62.9 4.4 69 424-492 182-254 (319)
302 KOG1832 HIV-1 Vpr-binding prot 95.9 0.008 1.7E-07 70.7 4.7 82 421-506 1101-1186(1516)
303 PF07433 DUF1513: Protein of u 95.7 0.94 2E-05 48.7 18.9 123 333-480 28-179 (305)
304 PRK11138 outer membrane biogen 95.7 0.6 1.3E-05 50.8 17.9 139 333-502 215-359 (394)
305 KOG2066 Vacuolar assembly/sort 95.6 0.27 5.8E-06 58.0 15.3 125 330-492 56-187 (846)
306 PRK11138 outer membrane biogen 95.6 0.23 5E-06 54.0 14.3 127 333-490 266-392 (394)
307 PF11768 DUF3312: Protein of u 95.5 0.072 1.6E-06 60.7 10.0 66 359-450 263-329 (545)
308 COG5354 Uncharacterized protei 95.4 0.15 3.2E-06 57.4 12.0 130 333-492 255-395 (561)
309 KOG4714 Nucleoporin [Nuclear s 95.3 0.023 5.1E-07 59.3 4.9 94 334-451 160-255 (319)
310 KOG2066 Vacuolar assembly/sort 95.2 0.37 8E-06 56.8 14.7 178 375-631 49-233 (846)
311 KOG2114 Vacuolar assembly/sort 95.2 0.27 5.9E-06 58.2 13.6 165 424-633 28-203 (933)
312 KOG4497 Uncharacterized conser 95.2 0.07 1.5E-06 57.3 8.1 119 334-480 30-150 (447)
313 COG4946 Uncharacterized protei 94.8 1.6 3.5E-05 49.2 17.7 164 313-508 274-453 (668)
314 PF14783 BBS2_Mid: Ciliary BBS 94.7 0.17 3.6E-06 46.8 8.3 57 430-490 11-69 (111)
315 PRK02888 nitrous-oxide reducta 94.5 0.26 5.6E-06 57.4 11.2 128 333-486 296-458 (635)
316 COG0823 TolB Periplasmic compo 94.5 0.43 9.3E-06 53.4 12.6 121 334-485 219-349 (425)
317 KOG2114 Vacuolar assembly/sort 94.2 2.9 6.3E-05 50.1 18.7 156 313-492 31-201 (933)
318 PF14783 BBS2_Mid: Ciliary BBS 94.2 1.7 3.7E-05 40.2 13.6 56 376-450 16-71 (111)
319 KOG1645 RING-finger-containing 94.1 0.54 1.2E-05 51.8 11.9 81 300-403 196-276 (463)
320 COG5170 CDC55 Serine/threonine 94.0 0.26 5.7E-06 52.8 9.1 87 423-509 28-138 (460)
321 KOG2315 Predicted translation 93.9 0.17 3.7E-06 57.4 7.8 73 307-394 313-391 (566)
322 KOG2444 WD40 repeat protein [G 93.6 0.16 3.4E-06 52.3 6.5 102 375-492 70-177 (238)
323 KOG1920 IkappaB kinase complex 93.4 9 0.0002 47.6 21.5 160 312-490 75-272 (1265)
324 KOG1008 Uncharacterized conser 93.4 0.053 1.2E-06 62.3 3.0 148 316-493 114-276 (783)
325 COG3386 Gluconolactonase [Carb 93.4 1.9 4.1E-05 46.3 14.6 133 333-492 47-193 (307)
326 COG0823 TolB Periplasmic compo 93.1 1.5 3.2E-05 49.2 13.7 140 301-480 241-386 (425)
327 KOG3621 WD40 repeat-containing 92.9 0.53 1.2E-05 54.9 10.0 148 311-485 39-191 (726)
328 KOG2314 Translation initiation 92.5 0.27 5.9E-06 56.0 6.8 73 426-506 215-300 (698)
329 KOG1832 HIV-1 Vpr-binding prot 91.2 0.3 6.6E-06 58.1 5.5 143 313-493 1109-1256(1516)
330 PF04841 Vps16_N: Vps16, N-ter 91.1 17 0.00037 40.5 19.0 48 334-393 62-109 (410)
331 PF04762 IKI3: IKI3 family; I 90.5 29 0.00062 42.9 21.6 31 462-492 425-456 (928)
332 KOG3617 WD40 and TPR repeat-co 90.2 0.68 1.5E-05 55.1 7.1 69 423-492 61-131 (1416)
333 PF04053 Coatomer_WDAD: Coatom 90.1 3.9 8.5E-05 46.2 12.9 132 317-490 117-251 (443)
334 KOG1645 RING-finger-containing 90.1 0.99 2.2E-05 49.9 7.9 92 335-452 175-268 (463)
335 PF02897 Peptidase_S9_N: Proly 90.0 4 8.7E-05 44.4 12.8 108 360-492 128-260 (414)
336 KOG4649 PQQ (pyrrolo-quinoline 89.8 13 0.00028 39.6 15.3 127 331-485 31-158 (354)
337 PF10168 Nup88: Nuclear pore c 89.8 13 0.00028 44.6 17.5 72 421-492 84-179 (717)
338 KOG1912 WD40 repeat protein [G 89.7 2.8 6.2E-05 49.7 11.5 157 360-566 20-186 (1062)
339 KOG2314 Translation initiation 88.4 11 0.00024 43.6 14.6 106 359-492 214-334 (698)
340 COG3391 Uncharacterized conser 88.3 41 0.0009 36.9 19.1 153 305-492 74-239 (381)
341 PF06433 Me-amine-dh_H: Methyl 88.3 45 0.00097 36.7 19.1 154 333-505 118-329 (342)
342 KOG4649 PQQ (pyrrolo-quinoline 88.0 32 0.00069 36.8 16.7 120 337-492 2-123 (354)
343 KOG2444 WD40 repeat protein [G 87.9 1.7 3.7E-05 45.0 7.4 62 432-493 70-133 (238)
344 KOG0882 Cyclophilin-related pe 87.7 4.9 0.00011 45.2 11.2 151 333-507 76-242 (558)
345 cd00216 PQQ_DH Dehydrogenases 87.6 6.9 0.00015 44.3 12.9 132 319-483 303-457 (488)
346 PF15492 Nbas_N: Neuroblastoma 87.6 42 0.00091 35.9 17.5 105 360-482 48-167 (282)
347 KOG4640 Anaphase-promoting com 87.5 1.6 3.5E-05 50.6 7.6 70 428-503 27-99 (665)
348 KOG1920 IkappaB kinase complex 87.1 8 0.00017 48.1 13.4 154 424-589 71-250 (1265)
349 COG5354 Uncharacterized protei 87.1 0.83 1.8E-05 51.7 5.0 78 423-507 34-127 (561)
350 PF04053 Coatomer_WDAD: Coatom 86.7 11 0.00025 42.5 13.8 138 305-491 33-172 (443)
351 KOG0882 Cyclophilin-related pe 86.6 0.73 1.6E-05 51.5 4.2 75 418-492 6-84 (558)
352 COG3391 Uncharacterized conser 86.5 50 0.0011 36.3 18.4 159 334-525 54-219 (381)
353 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.8 14 0.00031 42.5 14.3 24 430-453 470-493 (527)
354 KOG2079 Vacuolar assembly/sort 85.0 1.3 2.7E-05 54.1 5.3 102 375-493 99-204 (1206)
355 PF00780 CNH: CNH domain; Int 84.7 29 0.00064 35.3 14.7 58 432-492 7-64 (275)
356 PF14761 HPS3_N: Hermansky-Pud 84.7 11 0.00025 38.7 11.3 61 428-489 24-92 (215)
357 cd00216 PQQ_DH Dehydrogenases 84.3 27 0.00059 39.5 15.5 65 331-396 254-322 (488)
358 KOG2041 WD40 repeat protein [G 83.7 4.6 0.0001 47.7 8.9 139 313-492 22-186 (1189)
359 KOG2079 Vacuolar assembly/sort 83.7 2.1 4.6E-05 52.3 6.5 69 434-508 101-172 (1206)
360 PRK13616 lipoprotein LpqB; Pro 83.0 14 0.00031 43.2 12.8 29 462-490 446-474 (591)
361 PF03178 CPSF_A: CPSF A subuni 82.4 63 0.0014 34.1 16.5 132 333-489 107-262 (321)
362 cd00837 EVH1 EVH1 (Enabled, Va 82.2 12 0.00025 33.8 9.3 86 74-185 9-104 (104)
363 KOG2041 WD40 repeat protein [G 79.8 3.9 8.5E-05 48.3 6.6 72 421-492 14-101 (1189)
364 KOG3621 WD40 repeat-containing 79.7 9.3 0.0002 45.1 9.5 109 359-491 37-153 (726)
365 KOG1912 WD40 repeat protein [G 79.6 4.8 0.0001 48.0 7.2 109 376-492 438-551 (1062)
366 PF02897 Peptidase_S9_N: Proly 79.2 68 0.0015 34.9 15.9 94 333-451 150-261 (414)
367 PF10647 Gmad1: Lipoprotein Lp 77.5 44 0.00096 34.6 13.1 68 424-491 68-143 (253)
368 PF00930 DPPIV_N: Dipeptidyl p 76.6 8.5 0.00018 41.5 7.8 91 383-491 21-130 (353)
369 COG3490 Uncharacterized protei 75.7 35 0.00075 37.0 11.6 112 341-480 56-178 (366)
370 PF07569 Hira: TUP1-like enhan 74.8 14 0.00031 37.7 8.5 61 432-492 22-95 (219)
371 KOG1900 Nuclear pore complex, 74.5 53 0.0011 41.6 14.3 70 421-492 178-272 (1311)
372 PF03178 CPSF_A: CPSF A subuni 74.4 1.1E+02 0.0025 32.2 15.5 131 333-492 62-202 (321)
373 PF08596 Lgl_C: Lethal giant l 74.3 20 0.00044 39.9 10.2 143 422-570 87-247 (395)
374 PF12894 Apc4_WD40: Anaphase-p 74.0 9.5 0.00021 29.9 5.4 29 422-450 12-41 (47)
375 PRK13616 lipoprotein LpqB; Pro 73.5 1.4E+02 0.003 35.2 17.1 138 333-492 379-525 (591)
376 PF12234 Rav1p_C: RAVE protein 73.1 46 0.00099 39.5 13.0 58 432-491 40-103 (631)
377 PF00930 DPPIV_N: Dipeptidyl p 72.7 5.1 0.00011 43.2 4.9 51 440-492 21-71 (353)
378 TIGR02604 Piru_Ver_Nterm putat 72.6 88 0.0019 34.0 14.4 54 425-480 127-200 (367)
379 PF11715 Nup160: Nucleoporin N 70.9 24 0.00052 40.3 10.0 69 433-505 159-257 (547)
380 TIGR03075 PQQ_enz_alc_DH PQQ-d 70.0 35 0.00075 39.4 11.1 107 333-453 79-192 (527)
381 PF14870 PSII_BNR: Photosynthe 69.2 1.7E+02 0.0037 31.6 20.0 97 375-487 156-256 (302)
382 PF12894 Apc4_WD40: Anaphase-p 67.1 15 0.00033 28.8 5.1 30 462-491 10-40 (47)
383 PF12234 Rav1p_C: RAVE protein 66.8 1.1E+02 0.0024 36.4 14.3 101 377-492 43-156 (631)
384 PF00780 CNH: CNH domain; Int 65.9 1.6E+02 0.0034 29.9 15.9 98 375-492 7-122 (275)
385 KOG1916 Nuclear protein, conta 65.1 9.3 0.0002 46.4 5.2 59 433-493 196-266 (1283)
386 PF07676 PD40: WD40-like Beta 64.0 17 0.00038 26.2 4.8 19 462-480 7-25 (39)
387 KOG4640 Anaphase-promoting com 63.7 29 0.00062 40.8 8.6 55 334-398 43-97 (665)
388 PF11635 Med16: Mediator compl 63.6 76 0.0017 38.4 12.6 111 376-487 200-345 (753)
389 PF12657 TFIIIC_delta: Transcr 63.4 25 0.00054 34.2 7.2 28 465-492 87-121 (173)
390 TIGR03074 PQQ_membr_DH membran 62.3 72 0.0016 38.7 12.0 127 316-453 194-347 (764)
391 KOG3617 WD40 and TPR repeat-co 62.2 83 0.0018 38.6 12.0 154 301-502 63-225 (1416)
392 PF08728 CRT10: CRT10; InterP 62.2 2E+02 0.0044 34.8 15.4 108 434-566 116-246 (717)
393 PF05694 SBP56: 56kDa selenium 62.1 86 0.0019 35.8 11.7 139 333-480 222-390 (461)
394 cd00835 RanBD Ran-binding doma 62.0 20 0.00042 33.1 5.8 57 128-184 49-120 (122)
395 PF06977 SdiA-regulated: SdiA- 60.8 2.2E+02 0.0048 29.8 19.0 158 314-502 30-206 (248)
396 PF10168 Nup88: Nuclear pore c 59.8 3.9E+02 0.0085 32.4 20.5 31 421-451 146-180 (717)
397 KOG4499 Ca2+-binding protein R 59.7 20 0.00044 37.7 5.9 51 305-364 212-262 (310)
398 PF05096 Glu_cyclase_2: Glutam 59.1 1.6E+02 0.0034 31.4 12.5 150 315-502 54-209 (264)
399 COG4257 Vgb Streptogramin lyas 58.6 2.8E+02 0.006 30.3 14.4 142 301-491 65-217 (353)
400 PF00568 WH1: WH1 domain; Int 58.1 91 0.002 28.3 9.4 86 74-184 16-110 (111)
401 PF10313 DUF2415: Uncharacteri 57.8 22 0.00048 27.7 4.4 28 465-492 2-33 (43)
402 PF06433 Me-amine-dh_H: Methyl 57.6 31 0.00068 37.9 7.3 60 333-403 269-329 (342)
403 PF03088 Str_synth: Strictosid 57.3 9.5 0.00021 33.9 2.7 41 438-480 33-73 (89)
404 cd01206 Homer Homer type EVH1 56.8 41 0.00088 31.3 6.7 45 137-185 57-107 (111)
405 PF14727 PHTB1_N: PTHB1 N-term 56.6 97 0.0021 35.0 11.1 119 434-569 39-166 (418)
406 PF00638 Ran_BP1: RanBP1 domai 56.2 28 0.0006 31.8 5.8 90 73-185 16-120 (122)
407 PF08801 Nucleoporin_N: Nup133 56.0 1.2E+02 0.0027 33.4 11.8 67 426-492 135-219 (422)
408 PF04841 Vps16_N: Vps16, N-ter 55.9 45 0.00098 37.1 8.4 62 428-491 35-108 (410)
409 COG3386 Gluconolactonase [Carb 55.8 3E+02 0.0064 29.8 21.3 128 331-480 141-272 (307)
410 KOG1520 Predicted alkaloid syn 52.7 3.4E+02 0.0074 30.4 14.2 52 436-489 193-247 (376)
411 COG3490 Uncharacterized protei 51.6 3.6E+02 0.0078 29.5 16.7 114 335-479 93-241 (366)
412 PF01731 Arylesterase: Arylest 51.3 38 0.00083 29.9 5.5 47 441-491 35-83 (86)
413 PF12341 DUF3639: Protein of u 51.1 28 0.00061 24.5 3.7 24 464-489 2-26 (27)
414 PF07569 Hira: TUP1-like enhan 50.9 83 0.0018 32.1 8.7 72 375-450 22-95 (219)
415 PLN00033 photosystem II stabil 49.7 4.2E+02 0.0091 29.7 21.4 66 423-489 329-396 (398)
416 COG4590 ABC-type uncharacteriz 48.6 1.1E+02 0.0024 35.2 9.7 157 302-492 217-386 (733)
417 PF13449 Phytase-like: Esteras 48.1 2.4E+02 0.0053 30.2 12.2 58 423-482 86-165 (326)
418 PF05694 SBP56: 56kDa selenium 48.0 2.5E+02 0.0053 32.3 12.4 29 464-492 312-342 (461)
419 KOG3616 Selective LIM binding 47.5 42 0.00091 40.4 6.5 64 424-490 17-81 (1636)
420 KOG4659 Uncharacterized conser 47.4 1.4E+02 0.0031 38.3 11.1 29 461-489 659-688 (1899)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 46.2 1.3E+02 0.0028 34.0 10.1 61 333-397 329-402 (415)
422 PRK10115 protease 2; Provision 46.2 2.2E+02 0.0048 34.1 12.5 107 359-491 130-254 (686)
423 KOG1897 Damage-specific DNA bi 45.6 7.3E+02 0.016 31.3 21.6 133 332-492 469-613 (1096)
424 TIGR02604 Piru_Ver_Nterm putat 44.9 1.3E+02 0.0028 32.7 9.7 55 425-480 75-140 (367)
425 smart00461 WH1 WASP homology r 44.7 99 0.0022 28.0 7.4 75 88-185 22-106 (106)
426 PLN00033 photosystem II stabil 44.0 5.1E+02 0.011 29.1 20.0 68 422-490 281-354 (398)
427 PF14583 Pectate_lyase22: Olig 41.4 5.6E+02 0.012 28.8 17.6 144 318-492 49-222 (386)
428 PF01436 NHL: NHL repeat; Int 40.3 36 0.00077 23.5 2.9 23 466-488 4-27 (28)
429 KOG2247 WD40 repeat-containing 39.8 7.1 0.00015 44.6 -1.0 137 314-489 44-185 (615)
430 PRK13684 Ycf48-like protein; P 39.6 5.2E+02 0.011 27.9 18.6 67 422-488 215-284 (334)
431 TIGR02276 beta_rpt_yvtn 40-res 36.6 1.3E+02 0.0028 21.5 5.6 21 333-353 14-34 (42)
432 COG1520 FOG: WD40-like repeat 36.5 2.2E+02 0.0048 30.7 9.8 65 375-453 68-132 (370)
433 PHA03098 kelch-like protein; P 36.2 5.5E+02 0.012 29.1 13.3 68 316-395 294-368 (534)
434 PF14269 Arylsulfotran_2: Aryl 36.1 2.8E+02 0.0062 29.7 10.4 102 331-449 94-219 (299)
435 PRK13684 Ycf48-like protein; P 36.0 5.9E+02 0.013 27.5 19.5 66 423-490 261-329 (334)
436 smart00160 RanBD Ran-binding d 35.8 64 0.0014 30.3 4.8 57 128-184 59-130 (130)
437 COG5167 VID27 Protein involved 35.5 2.2E+02 0.0048 33.3 9.6 201 378-623 483-701 (776)
438 PF10647 Gmad1: Lipoprotein Lp 34.2 5.4E+02 0.012 26.6 16.4 130 333-488 48-192 (253)
439 PF11715 Nup160: Nucleoporin N 33.7 36 0.00078 38.9 3.3 23 431-453 229-251 (547)
440 PF14583 Pectate_lyase22: Olig 33.5 1.3E+02 0.0028 33.7 7.4 64 428-492 42-110 (386)
441 PF10313 DUF2415: Uncharacteri 33.3 99 0.0021 24.1 4.6 31 359-394 4-34 (43)
442 KOG1008 Uncharacterized conser 31.9 24 0.00052 41.6 1.5 65 426-492 159-225 (783)
443 PF07995 GSDH: Glucose / Sorbo 31.0 7E+02 0.015 26.8 15.0 24 461-485 179-205 (331)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 30.7 2.2E+02 0.0048 32.2 8.7 99 360-478 312-415 (415)
445 PF01011 PQQ: PQQ enzyme repea 30.4 1.1E+02 0.0024 22.2 4.4 20 333-352 10-29 (38)
446 KOG3630 Nuclear pore complex, 30.0 2.6E+02 0.0056 35.6 9.5 143 307-480 102-260 (1405)
447 KOG4460 Nuclear pore complex, 27.8 5.1E+02 0.011 30.6 10.8 115 377-492 54-198 (741)
448 cd01207 Ena-Vasp Enabled-VASP- 27.7 1.3E+02 0.0029 27.9 5.3 45 137-185 59-107 (111)
449 KOG2280 Vacuolar assembly/sort 26.4 7E+02 0.015 30.6 12.0 49 442-492 64-112 (829)
450 PF08728 CRT10: CRT10; InterP 25.6 6.9E+02 0.015 30.5 12.0 110 375-492 114-246 (717)
451 PF15349 DCA16: DDB1- and CUL4 24.9 91 0.002 30.5 3.8 69 1-73 1-73 (216)
452 PF07995 GSDH: Glucose / Sorbo 24.7 2.3E+02 0.0051 30.5 7.4 58 425-482 5-72 (331)
453 TIGR03606 non_repeat_PQQ dehyd 24.4 1.1E+03 0.024 27.0 13.1 51 425-475 33-90 (454)
454 PF10214 Rrn6: RNA polymerase 23.5 1.4E+03 0.03 27.8 16.5 146 461-632 77-233 (765)
455 KOG1916 Nuclear protein, conta 23.5 67 0.0014 39.6 3.2 55 333-396 205-268 (1283)
456 PF08596 Lgl_C: Lethal giant l 23.3 5.3E+02 0.012 28.8 10.1 101 359-473 90-203 (395)
457 smart00564 PQQ beta-propeller 22.9 1.5E+02 0.0032 20.2 3.7 17 333-349 16-32 (33)
458 PF13570 PQQ_3: PQQ-like domai 21.9 1E+02 0.0023 22.4 2.9 20 431-450 20-39 (40)
459 PF15525 DUF4652: Domain of un 21.4 4.2E+02 0.0092 27.1 7.9 61 304-366 111-171 (200)
460 PF10214 Rrn6: RNA polymerase 20.7 1.6E+03 0.034 27.4 17.2 118 361-492 151-276 (765)
461 PHA02713 hypothetical protein; 20.4 1.3E+03 0.028 26.9 12.8 68 316-395 303-377 (557)
462 PF05096 Glu_cyclase_2: Glutam 20.1 1.1E+03 0.023 25.3 13.4 136 333-484 110-251 (264)
No 1
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-106 Score=863.52 Aligned_cols=608 Identities=41% Similarity=0.581 Sum_probs=525.4
Q ss_pred CCCccccccc-ccCCccc----c----ccCCCCCcccccccc---CCCC--cCCCCCC---CCChHHHHHhhccceeccc
Q 047036 1 MGTSQSREDY-ISDSDYE----E----SESGESSQYDDAQET---SSSS--SQSGTKT---LNSLDEVDAKLKSLKLKYS 63 (634)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~----~----~~~~~~~~~~~~~~~---~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~ 63 (634)
||+++++++| +..+++| + |.++++.+|.++++. .++. .+..+++ .++++.++.+++||+|+||
T Consensus 1 r~~~~~~~~l~i~~~~~d~~~d~~d~~e~~eDe~s~~~s~~~~l~~ssis~k~~~~~~~d~~~~~va~e~e~~al~~~y~ 80 (644)
T KOG2395|consen 1 RGTSGFIYDLLIGRSDEDSEGDLEDGGEVEEDECSFSLSEDEKLGSSSISGKRKMPKSWDPLQELVAAEHENKALKLKYE 80 (644)
T ss_pred CCcccchhhheeeecccccccccccccccccccchhhhhhhhhcCcccccccccCCcccccccchhHHHHHhhhhhhhcc
Confidence 8999999998 4444332 2 224556678777765 3222 2344555 4669999999999999998
Q ss_pred CC--CCCCCCCceeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecceeeeee
Q 047036 64 TP--QSPNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSKVRAKV 141 (634)
Q Consensus 64 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~v 141 (634)
.. ..|..+|.++||+||+|++|+||||.++|++.|.|+++.+.+.+..+|++.+-..++....++||+-++.++..+|
T Consensus 81 ~~~~v~~s~~~~~~L~q~i~~~trk~k~v~s~k~~~t~~~~~s~~~~e~~dDedde~~~~g~~e~e~~~~~~et~i~~ev 160 (644)
T KOG2395|consen 81 QKQSVFPSNKNLADLEQFINPNTRKAKEVYSKKGTYTKFVKTSKRDEEFVDDEDDEHDESGDVEDEVWLLRVETKIDEEV 160 (644)
T ss_pred cceeeccccCCHHHHHHHhCCCCccceEEEecCceEEEeeccccchhhhccchhhhhhhhcccccceeeeecceeeehhc
Confidence 87 4688899999999999999999999999999999999999885533333222113344556789999999999999
Q ss_pred ccccCcccccccceEEEEeCcEEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchhhhhhhccceecc--ccCCCccccc
Q 047036 142 STEMQLKMFGDQRRIDFVDKGVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIG--WVKPEVADDS 219 (634)
Q Consensus 142 ~~~~~~~~~~~~~~~~f~~~~~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~~k~k~~~~~~~~--~~~~~~~~d~ 219 (634)
++.||.+++.+|++..|+.+|+|+++|...++|..|+-.|..|+|+++++...-+++++|.+.+++.+ |+++|+.||+
T Consensus 161 t~~~~iK~~~D~~~e~fi~qgvw~~~f~~~~d~n~Fv~~y~~lrF~d~~~~~qf~~~~vk~l~~~~n~e~w~n~Ea~Dd~ 240 (644)
T KOG2395|consen 161 THFEQIKTEEDQRREDFILQGVWAVWFAIDEDINAFVFNYFDLRFEDNLKFEQFEENYVKCLWKDLNGEKWANPEAADDS 240 (644)
T ss_pred CchhhhcccchhHHHhhhhheeeeeeecccchhhhhhhhhhheeecchHHHHHHHHHHHHHHHHhhcccccCChhhccch
Confidence 99999999999999999999999999999999999999999999999999998899999999999999 9999999999
Q ss_pred ccccccCCCCCCC--CCCCCcCCCchhhHHHHHHhcC----------CCcEEEeeeCCCeEEEecCeeeEEEccCCceec
Q 047036 220 MWEDADDGLDKTP--ESVTPVRGNRDLLEEFEELANG----------GVQSLTLGALDNSFLVSDLGLQVYRNYNRGIHN 287 (634)
Q Consensus 220 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~LavG~~D~sfvv~G~~igV~k~~~~gl~~ 287 (634)
+|||+|+.-..+| ++.+++++..++++.|++..++ +|..|+|||. ++||+|+.+||||++. .|+.+
T Consensus 241 ~~ed~ed~~l~s~~~~Es~~~ee~sd~ed~f~d~s~~~i~sl~~~a~~NS~Lvv~~~-ns~V~Rn~~iGVfk~e-kgl~f 318 (644)
T KOG2395|consen 241 EWEDAEDDRLNSPNEEESEEEEEVSDLEDCFEDESEGGIGSLDEGALDNSFLVVGYG-NSYVTRNNRIGVFKNE-KGLEF 318 (644)
T ss_pred hhhhhhhhhhcCCCCcccccccccchhhhhhhHhhhcccchhhhcccCCceEEeccc-ceEEEecceeeeeccC-CceEE
Confidence 9999987432222 2234445556666677765422 4668888883 3999999999999985 89999
Q ss_pred ceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCC
Q 047036 288 KGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDT 367 (634)
Q Consensus 288 ~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~ 367 (634)
+.++.+++.. .|....|.++|||+++++||++++... ..|+.+|+++||+|.+|+.|.+ |+++.|.|+.
T Consensus 319 ~~~i~n~s~~---~g~S~~P~K~mL~~~dsnlil~~~~~~-----~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~ 387 (644)
T KOG2395|consen 319 KAAIKNVSDG---DGKSIDPHKAMLHRADSNLILMDGGEQ-----DKLYKLDIERGKIVEEWKFEDD---INMVDITPDF 387 (644)
T ss_pred EeccCcccCC---CccccCcchhhhhccccceEeeCCCCc-----CcceeeecccceeeeEeeccCC---cceeeccCCc
Confidence 8888776654 677789999999999999999999865 6799999999999999999998 5789999999
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEE
Q 047036 368 KSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLY 447 (634)
Q Consensus 368 K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLW 447 (634)
||+||+ .++++.|.+|+.||+||||..+.. ++.|.|+|+|+++++|+|+|++.+|+||+||.+|.||||
T Consensus 388 K~~Ql~-~e~TlvGLs~n~vfriDpRv~~~~----------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLY 456 (644)
T KOG2395|consen 388 KFAQLT-SEQTLVGLSDNSVFRIDPRVQGKN----------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLY 456 (644)
T ss_pred chhccc-ccccEEeecCCceEEecccccCcc----------eeeeeeccccccccccceeeecCCceEEEeecCCcEEee
Confidence 999999 599999999999999999965431 355889999999999999999999999999999999999
Q ss_pred eccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccc
Q 047036 448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHL 527 (634)
Q Consensus 448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~ 527 (634)
|..+ ++||+.|||+|++|++|++|.||+||++||++||+|+|+.++|++|.+..||.+.+++++|+||+|+|+|+|.+.
T Consensus 457 dri~-~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~ 535 (644)
T KOG2395|consen 457 DRIG-RRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAG 535 (644)
T ss_pred hhhh-hhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhh
Confidence 9954 679999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 528 AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 528 ~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
....+.++ ++|+|+||.|++|++||||+|+|+|+|||+.||+|.++|||++++++.||||.+...++++|.++||+|+|
T Consensus 536 ~~~~~k~~-a~Fs~nTg~g~qE~tIVtS~G~f~V~WnLd~VkNg~~~~Yri~r~~~~v~adnf~fg~ds~Viv~l~dDv~ 614 (644)
T KOG2395|consen 536 IDNEFKGT-AKFSFNTGIGAQERTIVTSTGPFSVSWNLDRVKNGKHYSYRIRRYLALVVADNFEFGEDSIVIVALPDDVF 614 (644)
T ss_pred hhhhccCc-eeEEEeccCCcceeeEEEeecceEEEEEhhHhhccCcchhhhhhhccceeEeeEEecCCceEEEecccchh
Confidence 33333333 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC---CCCCCEEEEcCCceeeeeccCCC
Q 047036 608 AVTD---SPEAPLVVATPMKVSSISLSGRR 634 (634)
Q Consensus 608 ~~~~---~~~~~iivA~~~~v~~~~~~~~~ 634 (634)
.++. .+.++.++|||.+||+.++++||
T Consensus 615 ~v~~~s~k~p~r~vi~tp~k~s~~d~~~~~ 644 (644)
T KOG2395|consen 615 KVSVRSLKRPARLVIATPAKVSSQDLSGKR 644 (644)
T ss_pred hhcccccCCCCCceecccccccccccccCC
Confidence 7765 57899999999999999999998
No 2
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=100.00 E-value=1.1e-97 Score=849.14 Aligned_cols=495 Identities=35% Similarity=0.527 Sum_probs=426.0
Q ss_pred CCCCCceeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecce---eeeeeccc
Q 047036 68 PNVKNPVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSK---VRAKVSTE 144 (634)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~---~~~~v~~~ 144 (634)
+...+.++||+| +++.++|++.++.+.+.+++. ++|+|||.+.|+. |+++|+++
T Consensus 249 ~~~~~~~~L~l~---d~~~~~f~lq~~~v~~~i~~~--------------------~~~~y~l~i~~~~~~~l~~~v~s~ 305 (794)
T PF08553_consen 249 ILASESAELYLY---DPPTGKFVLQDSSVTAKIIET--------------------GKWEYWLQIEGKDKIWLGQPVSSD 305 (794)
T ss_pred eeeeeeEEEEEE---cCCCceEEEecCcEEEEEEEc--------------------CCeEEEEEEecCCceEEeeeccCC
Confidence 444588999999 999999999999999999985 4589999998873 89999999
Q ss_pred cCcccccccceEEEEe---C---cEEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchh-hhhhhccceeccccCCCccc
Q 047036 145 MQLKMFGDQRRIDFVD---K---GVWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEE-NKMKVYGKEFIGWVKPEVAD 217 (634)
Q Consensus 145 ~~~~~~~~~~~~~f~~---~---~~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~-~k~k~~~~~~~~~~~~~~~~ 217 (634)
|||+|..++++++|+. . +||||||+++++|++||++|++||||++|+++|.+. ++.+.|..++..|..+++.+
T Consensus 306 mNp~F~~e~lSFiFN~~~~~~~~~sw~lkF~~~~~~~~F~~~~~~~l~E~~n~~~w~~~k~~e~~Y~~~~~~~~~~ed~~ 385 (794)
T PF08553_consen 306 MNPVFNFEHLSFIFNYYTEDGSAYSWLLKFKDQEDYERFQEKFMKCLWENLNKMKWSKIKEDEQEYVLDAFSDLEMEDAD 385 (794)
T ss_pred cCeEEEcceeEEEEEeEcCCCceEEEEEEeCCHHHHHHHHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhhhccccccc
Confidence 9999999999999996 2 399999999999999999999999999999999775 66777777777777666653
Q ss_pred cc----ccccccCCCCCCCCCCCCcCCCchhhHHHHHH-------hcCCCcEEEeee-CCCeEEEecCeeeEEEcc-CCc
Q 047036 218 DS----MWEDADDGLDKTPESVTPVRGNRDLLEEFEEL-------ANGGVQSLTLGA-LDNSFLVSDLGLQVYRNY-NRG 284 (634)
Q Consensus 218 d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~LavG~-~D~sfvv~G~~igV~k~~-~~g 284 (634)
++ ++++++++++++++ ++.+.+....++|++. ..++|++||||| +||||||||++||||++. .++
T Consensus 386 ~~~~~~~~e~e~e~~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~ 463 (794)
T PF08553_consen 386 DEEDDEEEEDEEEEEEEEED--EEESSEEYDSEEFEEDDVEEKDKDGEKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDG 463 (794)
T ss_pred ccccchhhhccccccccccc--cccccccccccccccccccccccCCCccceeEeeeccCceEEECCCcEeEEECCCCCc
Confidence 32 23332222211111 1111111112333332 234667999999 899999999999999997 566
Q ss_pred eecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe
Q 047036 285 IHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT 364 (634)
Q Consensus 285 l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs 364 (634)
++|.+++.++.+. .|..|+|+++|||++|++|||+++.++ +.||.|||++||+|.+|+.|.+. +|+.|.
T Consensus 464 l~f~t~i~~i~~~---~g~~~~P~k~mL~~~d~~mil~~~~~~-----~~ly~mDLe~GKVV~eW~~~~~~---~v~~~~ 532 (794)
T PF08553_consen 464 LEFSTAISNISTP---KGKNFTPKKAMLHDQDRNMILLDPNNP-----NKLYKMDLERGKVVEEWKVHDDI---PVVDIA 532 (794)
T ss_pred eeeeEEecccccC---CCcccCcchhhhhccccceEeecCCCC-----CceEEEecCCCcEEEEeecCCCc---ceeEec
Confidence 9999888877653 788999999999999999999998865 78999999999999999999873 578999
Q ss_pred cCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcE
Q 047036 365 NDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKI 444 (634)
Q Consensus 365 Pd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtI 444 (634)
|+.|++||++ +++++|.+++.|++||||..+.. +.|.++|+|+++++|+|+|++.+|+||+||.+|.|
T Consensus 533 p~~K~aqlt~-e~tflGls~n~lfriDpR~~~~k-----------~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~I 600 (794)
T PF08553_consen 533 PDSKFAQLTN-EQTFLGLSDNSLFRIDPRLSGNK-----------LVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDI 600 (794)
T ss_pred ccccccccCC-CceEEEECCCceEEeccCCCCCc-----------eeeccccccccCCCceEEEecCCceEEEEeCCCcE
Confidence 9999999995 89999999999999999976421 12456899999999999999999999999999999
Q ss_pred EEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCC
Q 047036 445 RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPL 523 (634)
Q Consensus 445 RLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe 523 (634)
||||..+. +|||+|||+|+||++|++|.||+|||+||++||+|+|+.++++++++..||+++|+ +.+|+||+|+|+|+
T Consensus 601 RLyd~~g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe 679 (794)
T PF08553_consen 601 RLYDRLGK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPE 679 (794)
T ss_pred Eeecccch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHH
Confidence 99998875 59999999999999999999999999999999999999999988999999999998 68999999999999
Q ss_pred Ccccc----CCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeee
Q 047036 524 DSHLA----GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVE 599 (634)
Q Consensus 524 ~~~~~----g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~ 599 (634)
|++++ +.+++|+||+|| ||.|++|++||||+|+|+|+|||++|++|++. ||+|++|++.|+
T Consensus 680 ~~~~~~~~~~~~~~Ft~a~Fn--t~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~------------~Y~ikry~~~V~- 744 (794)
T PF08553_consen 680 HVAYMQHETGKPISFTPAKFN--TGIGKQETSIVTSTGPFVVTWNFKKVKRGKKD------------PYQIKRYDENVV- 744 (794)
T ss_pred HHHHHHhccCCCceeeceEEe--cCCCCccceEEEeccCEEEEEEHHHHhCCCCC------------ceEEEEcCCceE-
Confidence 98776 889999999999 78889999999999999999999999999988 578999999999
Q ss_pred eccccCccccCCCCCCCEEEEcCCceeeeeccC
Q 047036 600 SRFMHDKFAVTDSPEAPLVVATPMKVSSISLSG 632 (634)
Q Consensus 600 ~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~ 632 (634)
+|||+||.+ ++|||||||+|+|+++.+
T Consensus 745 ----~dnF~fg~d--~~vival~~dV~m~~~~~ 771 (794)
T PF08553_consen 745 ----ADNFKFGSD--KNVIVALPNDVNMVKKKS 771 (794)
T ss_pred ----EccceeCCC--CcEEEEccchhhhhhhhh
Confidence 888899974 899999999999999865
No 3
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-82 Score=675.62 Aligned_cols=479 Identities=24% Similarity=0.397 Sum_probs=400.4
Q ss_pred CCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecce---eeeeeccccCcccccccceEEEE
Q 047036 83 NTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGSK---VRAKVSTEMQLKMFGDQRRIDFV 159 (634)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~~---~~~~v~~~~~~~~~~~~~~~~f~ 159 (634)
++...+.|+.+.+.+-.-++. ++|.|||.|.+.. +.+.|.++|||.| ++...+|+
T Consensus 242 d~~~e~Filq~p~Vkv~i~d~--------------------G~~~fw~~Iet~d~~~l~~~V~~~~np~f--~~~~~tFv 299 (776)
T COG5167 242 DTATERFILQKPHVKVVIVDD--------------------GKEVFWIRIETRDDVILFEEVRTETNPYF--DQKNTTFV 299 (776)
T ss_pred cchhheeeecCCceEEEEEec--------------------CCeEEEEEEecccceeehheeccccCcce--ecccceee
Confidence 444559999999998888874 5678999998873 9999999999974 47777888
Q ss_pred eC----c---EEEEEcCChHHHHHHHHHHHHhHhhhccCCCcchhhhhhhccceeccccCC---Cccccccc--cccc--
Q 047036 160 DK----G---VWALKFFSDSEYRKFVTEFQDRLFENVYGLKATEENKMKVYGKEFIGWVKP---EVADDSMW--EDAD-- 225 (634)
Q Consensus 160 ~~----~---~w~lkF~~~~~~~~F~~~~~~~l~e~~~~~~~~~~~k~k~~~~~~~~~~~~---~~~~d~~~--~~~~-- 225 (634)
|| + ||+|||.++..|.+|++.|++|||++||+.+|+.+. .-.++||..... |..+|++. ++.+
T Consensus 300 wny~~~n~~~s~~LrF~d~~~~~qF~~~~i~cLw~~lN~e~w~~~~---~e~kDYilds~~~~~E~q~~d~~~f~~~~~e 376 (776)
T COG5167 300 WNYMEDNVFHSFSLRFLDNLDFLQFLSKYIGCLWRNLNNEKWGNEE---AERKDYILDSSSVPLEKQFDDILYFEKMEIE 376 (776)
T ss_pred eeeecccchheeeeeecchhHHHHHHHHHHHHHHHHhhhhhccCch---hhhhccccccccCchhhccchhHHHHHhhhh
Confidence 75 2 999999999999999999999999999999985432 336789887542 11222221 1110
Q ss_pred ---CCCCCCCCCCCCcCCCc------hhhHHHHH---HhcCCCcEEEeee-CCCeEEEecCeeeEEEccCCc-eecceeE
Q 047036 226 ---DGLDKTPESVTPVRGNR------DLLEEFEE---LANGGVQSLTLGA-LDNSFLVSDLGLQVYRNYNRG-IHNKGVS 291 (634)
Q Consensus 226 ---~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~LavG~-~D~sfvv~G~~igV~k~~~~g-l~~~~~~ 291 (634)
.++++++++.++.+.+. ...+++|+ ++..+|..|+||| ++||||+||++||||++.+.+ |+|+.++
T Consensus 377 ~r~~eesE~eee~ed~ede~~~~k~~~~dd~~E~~~raa~e~Ns~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aai 456 (776)
T COG5167 377 NRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAI 456 (776)
T ss_pred ccCcccchhhhhhhhhhcccccccccccchhhhhhhhhhcccCceEEEEEcccceeEeeCCeeeeEeccCCcceehhhhh
Confidence 00000111111111100 01223333 4566788999999 999999999999999996666 9999999
Q ss_pred EEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCC
Q 047036 292 VRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQ 371 (634)
Q Consensus 292 ~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q 371 (634)
.+++.. .|+.+.|.+.|||++|+++|++.+... ..++.||+++||+|.+|..|.+- ||.|.|+.||+|
T Consensus 457 knvs~~---~GKSidp~K~mlh~~dssli~~dg~~~-----~kLykmDIErGkvveeW~~~ddv----vVqy~p~~kf~q 524 (776)
T COG5167 457 KNVSDD---GGKSIDPEKIMLHDNDSSLIYLDGGER-----DKLYKMDIERGKVVEEWDLKDDV----VVQYNPYFKFQQ 524 (776)
T ss_pred hhccCC---CCCcCChhhceeecCCcceEEecCCCc-----ccceeeecccceeeeEeecCCcc----eeecCCchhHHh
Confidence 888764 789999999999999999999998865 57999999999999999999873 679999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccc
Q 047036 372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t 451 (634)
||+ ++++.|.+++.|+++|||.++..+.. .+.++|+++++|+|++++..|+||+||..|.|||||+.+
T Consensus 525 mt~-eqtlvGlS~~svFrIDPR~~gNKi~v-----------~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig 592 (776)
T COG5167 525 MTD-EQTLVGLSDYSVFRIDPRARGNKIKV-----------VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG 592 (776)
T ss_pred cCc-cceEEeecccceEEecccccCCceee-----------eeehhccccccccccccccCceEEEecCCCceeeehhhc
Confidence 996 89999999999999999987643222 146899999999999999999999999999999999998
Q ss_pred cccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCCCcccc--
Q 047036 452 MRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPLDSHLA-- 528 (634)
Q Consensus 452 ~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe~~~~~-- 528 (634)
.| ||+.|||+|+.|.+|+++.+|+||++||.+||+|.|+.+++++..+..||...|+ ..+|.|++|||+|+|.+.+
T Consensus 593 ~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik~g~~aGr~GF~ksF~~~ekpkpkrLql~PeH~A~i~~ 671 (776)
T COG5167 593 KR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPIKYGQPAGRDGFLKSFPASEKPKPKRLQLKPEHLAHINT 671 (776)
T ss_pred ch-hhhcCcccccceeeeEeecCCcEEEEeecceEEEEecccccCCccccchhhhcCccccCCCcceeecCHHHHHHHHH
Confidence 75 9999999999999999999999999999999999999998888888889999997 6689999999999997543
Q ss_pred --CCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCc
Q 047036 529 --GTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDK 606 (634)
Q Consensus 529 --g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~ 606 (634)
..++.||||+|| ||.+.+|++||||+|+|+|.|||+.||+|.++ +|+|+||+..|+ +||
T Consensus 672 ~~K~~i~FTpAkFn--TGIda~E~tIVtStGpy~IsWnLd~vlng~~y------------sY~irry~a~Vv-----Adn 732 (776)
T COG5167 672 YTKEEIDFTPAKFN--TGIDASENTIVTSTGPYVISWNLDDVLNGKLY------------SYQIRRYSALVV-----ADN 732 (776)
T ss_pred hhccCcccchhhcc--cccCcccceEEeccCceEEEEehhhhhcCCcc------------hhhheeccccee-----ecc
Confidence 468999999999 99999999999999999999999999999886 578999999998 999
Q ss_pred cccCCCCCCCEEEEcCCceeeeeccC
Q 047036 607 FAVTDSPEAPLVVATPMKVSSISLSG 632 (634)
Q Consensus 607 f~~~~~~~~~iivA~~~~v~~~~~~~ 632 (634)
|+||. |++||||||+||+|+++++
T Consensus 733 FeFG~--D~~vIValpDDV~~v~v~s 756 (776)
T COG5167 733 FEFGE--DSNVIVALPDDVRKVNVRS 756 (776)
T ss_pred ccccC--CcceEEEccchhhhhhhhh
Confidence 99996 4899999999999999876
No 4
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.1e-34 Score=289.45 Aligned_cols=280 Identities=17% Similarity=0.252 Sum_probs=215.1
Q ss_pred CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+.....-| ||+++++.| ..|=+|+...+--+ .-.+.+| +|.. --+-.+.|+++|++++.|
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN----~~~lkgH---sgAV----M~l~~~~d~s~i~S~gtD---- 111 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN----FWVLKGH---SGAV----MELHGMRDGSHILSCGTD---- 111 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccc----eeeeccc---ccee----EeeeeccCCCEEEEecCC----
Confidence 344666667 777777764 46666775332111 1123344 1111 112235677889999987
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
++|+.||++||++++++++|.+-| +++.|...+ .+++.||++|+|+|+||+|.+.+ ++++
T Consensus 112 --k~v~~wD~~tG~~~rk~k~h~~~v----Ns~~p~rrg-----~~lv~SgsdD~t~kl~D~R~k~~-~~t~-------- 171 (338)
T KOG0265|consen 112 --KTVRGWDAETGKRIRKHKGHTSFV----NSLDPSRRG-----PQLVCSGSDDGTLKLWDIRKKEA-IKTF-------- 171 (338)
T ss_pred --ceEEEEecccceeeehhcccccee----eecCccccC-----CeEEEecCCCceEEEEeecccch-hhcc--------
Confidence 799999999999999999999854 455575443 25899999999999999998764 4554
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL 488 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL 488 (634)
..++++++++|...+ .+.+|+.|+.|++||++.. ....+|.||.|+|++|..||+|.+|++ ++|++|++
T Consensus 172 --------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~-d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 172 --------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN-DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred --------ccceeEEEEEecccccceeeccccCceeeeccccC-cceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence 246788999999988 8999999999999998764 477899999999999999999999999 99999999
Q ss_pred EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036 489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
||+++ + .|.-|+|++...|.|. .+++..++.|+++ .+.|.+ |.|++|+|||...
T Consensus 243 wd~rp--------------~---~p~~R~v~if~g~~hn--feknlL~cswsp~------~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 243 WDVRP--------------F---APSQRCVKIFQGHIHN--FEKNLLKCSWSPN------GTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEecc--------------c---CCCCceEEEeecchhh--hhhhcceeeccCC------CCccccccccceEEEeeccc
Confidence 99874 2 2666889988888875 4678889989863 356655 8899999999752
Q ss_pred hhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc--ccCCCCCCCEEEE
Q 047036 568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF--AVTDSPEAPLVVA 620 (634)
Q Consensus 568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f--~~~~~~~~~iivA 620 (634)
.. .-|++++|..+|+.++| |+.. ..+|++|+.|.+.
T Consensus 298 ---r~-------------~lyklpGh~gsvn~~~F-hp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 298 ---RR-------------ILYKLPGHYGSVNEVDF-HPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ---cc-------------EEEEcCCcceeEEEeee-cCCCcEEEEeccCceeEee
Confidence 11 24999999999999999 8876 4478889998864
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=264.85 Aligned_cols=267 Identities=16% Similarity=0.186 Sum_probs=211.6
Q ss_pred EEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
+|.|+. ||+..++.|. .|.+|.-..++..+ -.|.+| +++.+.+|.|-+. ..++++|.+++.|
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g----~~l~gH~K~It~Lawep~hl---~p~~r~las~skD------ 226 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG----RALRGHKKWITALAWEPLHL---VPPCRRLASSSKD------ 226 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCccc----ccccCcccceeEEeeccccc---CCCccceecccCC------
Confidence 999999 9999999985 67777755555332 346777 5668999999874 5677767776665
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++|++||+.-|+++..+.||+..| +++.+..+ .+|+|||.|+|||+|+...+. ++.+|.||..+|++.
T Consensus 227 g~vrIWd~~~~~~~~~lsgHT~~V--TCvrwGG~---------gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~l 294 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVRTLSGHTASV--TCVRWGGE---------GLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHL 294 (480)
T ss_pred CCEEEEEccCceEEEEeccCccce--EEEEEcCC---------ceEEecCCCceEEEEEccchh-HHHhhcccchheeee
Confidence 799999999999999999999987 45577654 599999999999999998754 468999999999877
Q ss_pred ccccccccCcceEEEEECCCC--------------------------eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 413 TQGHQFSRGTNFQCFASTGDG--------------------------SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG--------------------------~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
+...+|+. ..-||.+-| +++|||.|+++-||+....+++++.+.||..-|
T Consensus 295 alsTdy~L----Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 295 ALSTDYVL----RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eccchhhh----hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 76666652 222333322 599999999999999765556778899999999
Q ss_pred EEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccC
Q 047036 467 THVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTEN 545 (634)
Q Consensus 467 tsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~ 545 (634)
++|.|||||+|||| |.|+.|+|||.+ +|+.+..|.||++.. + .+ .|+
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~----tGk~lasfRGHv~~V---------------Y---qv-----aws----- 418 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGR----TGKFLASFRGHVAAV---------------Y---QV-----AWS----- 418 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCC----Ccchhhhhhhcccee---------------E---EE-----Eec-----
Confidence 99999999999999 999999999976 899999999999632 1 23 233
Q ss_pred CCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036 546 GKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF 602 (634)
Q Consensus 546 g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f 602 (634)
.+-++||+ |.|.++.||++++ .++. |.+++|.++|-.+..
T Consensus 419 -aDsRLlVS~SkDsTLKvw~V~t---kKl~-------------~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 419 -ADSRLLVSGSKDSTLKVWDVRT---KKLK-------------QDLPGHADEVFAVDW 459 (480)
T ss_pred -cCccEEEEcCCCceEEEEEeee---eeec-------------ccCCCCCceEEEEEe
Confidence 12478888 6799999999974 2232 689999999887766
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-28 Score=246.97 Aligned_cols=237 Identities=17% Similarity=0.213 Sum_probs=180.8
Q ss_pred cEEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
..||.-..+..+++. +.+|=+|++..+...+-.....|.||.. +..+.. ..|+++.|+++.|
T Consensus 19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~--------s~dg~~alS~swD------ 84 (315)
T KOG0279|consen 19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL--------SSDGNFALSASWD------ 84 (315)
T ss_pred EEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE--------ccCCceEEecccc------
Confidence 345544455666664 5677889987666555445566777631 233333 4566788888886
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+++|+||+++|+..+.|.||+..| ..++|+|| +++|+|||.|+||++|++... | ..++..++.
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dV--lsva~s~d--------n~qivSGSrDkTiklwnt~g~-c-k~t~~~~~~----- 147 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDV--LSVAFSTD--------NRQIVSGSRDKTIKLWNTLGV-C-KYTIHEDSH----- 147 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCce--EEEEecCC--------CceeecCCCcceeeeeeeccc-E-EEEEecCCC-----
Confidence 799999999999999999999988 34599999 689999999999999999753 3 234433220
Q ss_pred ccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL 488 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL 488 (634)
..-++|+.|+|+ . +|+++|.|+++|+||+.+. +.++.++||+..|+.|+|||||..+++ +.|+.++|
T Consensus 148 --------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 148 --------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred --------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 223689999997 3 7999999999999999987 488999999999999999999999999 89999999
Q ss_pred EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036 489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
||+. .|+++..|. |+. . ...+.|+|. +.+|+++++..|+|||++.
T Consensus 219 wdL~----~~k~lysl~-a~~---------------~---v~sl~fspn-----------rywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 219 WDLN----EGKNLYSLE-AFD---------------I---VNSLCFSPN-----------RYWLCAATATSIKIWDLES 263 (315)
T ss_pred EEcc----CCceeEecc-CCC---------------e---EeeEEecCC-----------ceeEeeccCCceEEEeccc
Confidence 9986 566554443 221 0 124666666 3589999999999999973
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=5e-27 Score=262.36 Aligned_cols=273 Identities=15% Similarity=0.190 Sum_probs=203.5
Q ss_pred EEEeee-CCCeEEEec---CeeeEEEccCCc------------e--------------ecceeEEEecCC-CCCcccccC
Q 047036 258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRG------------I--------------HNKGVSVRFDGG-SSKIGSNST 306 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G---~~igV~k~~~~g------------l--------------~~~~~~~~~~~~-~~~~g~~fs 306 (634)
+-+.++ .|.+.++-| +.|.||...+.. + ...+....+.|| .|+-|+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 556666 788888876 799999876311 0 111223335565 345566666
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
|+ ++.||+++.| .+||||.+.|-.++-.++||...| +.|.|+|- |-++||||.|+|
T Consensus 461 Pd--------~rfLlScSED------~svRLWsl~t~s~~V~y~GH~~PV--wdV~F~P~--------GyYFatas~D~t 516 (707)
T KOG0263|consen 461 PD--------RRFLLSCSED------SSVRLWSLDTWSCLVIYKGHLAPV--WDVQFAPR--------GYYFATASHDQT 516 (707)
T ss_pred cc--------ccceeeccCC------cceeeeecccceeEEEecCCCcce--eeEEecCC--------ceEEEecCCCce
Confidence 55 4667888765 799999999999999999999875 78899997 679999999999
Q ss_pred EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP 465 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ 465 (634)
.++|.... ..+.+.+.||.+ .+.|+.|.|+. |+|+||.|.++|+||+.++. ..+.|.||..|
T Consensus 517 ArLWs~d~-~~PlRifaghls---------------DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~GH~~~ 579 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAGHLS---------------DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFTGHKGP 579 (707)
T ss_pred eeeeeccc-CCchhhhccccc---------------ccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEecCCCCc
Confidence 99999764 334566777654 35799999998 99999999999999999984 78899999999
Q ss_pred eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036 466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE 544 (634)
Q Consensus 466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~ 544 (634)
|++|+|||+|+||+| +.|+.|+|||+. .|+.+..|.||.+. +..+.|++.
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~t------------------i~SlsFS~d------- 630 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGT------------------IYSLSFSRD------- 630 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcC----CCcchhhhhcccCc------------------eeEEEEecC-------
Confidence 999999999999999 999999999985 68888889999642 246788766
Q ss_pred CCCCceEEEEEcCCeEEEEeChhhhcc-------cccccccccCC-cceeeEEEeccCCCeeeeccc
Q 047036 545 NGKQERHLVATVGKFSVIWDFQQVKNS-------AHECYRNQQGL-KSCYCYKIVLKDESIVESRFM 603 (634)
Q Consensus 545 ~g~~E~~IvtStg~~viiWdl~~v~~~-------~~~~y~~~~~~-~~~~~Y~i~~~~~~i~~~~f~ 603 (634)
| .-.++++.|..|.+||+.++... ....++.++.. .+..--.+.-+...|+.+.|.
T Consensus 631 -g--~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ft 694 (707)
T KOG0263|consen 631 -G--NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFT 694 (707)
T ss_pred -C--CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEe
Confidence 3 23445578999999999987754 11122333332 222223445566677767663
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.3e-26 Score=241.19 Aligned_cols=231 Identities=12% Similarity=0.144 Sum_probs=187.3
Q ss_pred CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036 299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST 378 (634)
Q Consensus 299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l 378 (634)
|+.++.|++ |+++|++++-. +++++|.+.++..+++|.||+..| ..+.|+|... +..+
T Consensus 177 Pis~~~fS~--------ds~~laT~sws------G~~kvW~~~~~~~~~~l~gH~~~v--~~~~fhP~~~------~~~l 234 (459)
T KOG0272|consen 177 PISGCSFSR--------DSKHLATGSWS------GLVKVWSVPQCNLLQTLRGHTSRV--GAAVFHPVDS------DLNL 234 (459)
T ss_pred cceeeEeec--------CCCeEEEeecC------CceeEeecCCcceeEEEeccccce--eeEEEccCCC------ccce
Confidence 345555554 45667777775 799999999999999999999986 4569999732 4689
Q ss_pred EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036 379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt 457 (634)
|||+.|+++++|++.... +++.|.||... +..|+|.|+| +|++||.|.+-||||+.+. ....
T Consensus 235 at~s~Dgtvklw~~~~e~-~l~~l~gH~~R---------------Vs~VafHPsG~~L~TasfD~tWRlWD~~tk-~ElL 297 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQET-PLQDLEGHLAR---------------VSRVAFHPSGKFLGTASFDSTWRLWDLETK-SELL 297 (459)
T ss_pred eeeccCCceeeeccCCCc-chhhhhcchhh---------------heeeeecCCCceeeecccccchhhcccccc-hhhH
Confidence 999999999999998754 56888777643 5788999999 8999999999999999986 4566
Q ss_pred cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccc
Q 047036 458 AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHG 536 (634)
Q Consensus 458 ~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~ 536 (634)
..+||..+|.+|+|.|||..+++ +.|.+-||||++ +|+++..|.||..+. ..++|+|
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I------------------~~V~fsP 355 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEI------------------LSVAFSP 355 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecc----cCcEEEEecccccce------------------eeEeECC
Confidence 77899999999999999999999 999999999997 899999999998532 3588888
Q ss_pred ccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccc--cCccccCCCC
Q 047036 537 GHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM--HDKFAVTDSP 613 (634)
Q Consensus 537 a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~--~d~f~~~~~~ 613 (634)
+ | ..|+| |.|+.+.||||++... .|.|+.|..-|.+|.|- +.+|-..++=
T Consensus 356 N--------G---y~lATgs~Dnt~kVWDLR~r~~----------------ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 356 N--------G---YHLATGSSDNTCKVWDLRMRSE----------------LYTIPAHSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred C--------c---eEEeecCCCCcEEEeeeccccc----------------ceecccccchhhheEecccCCeEEEEccc
Confidence 8 4 46666 7799999999985332 48999999999999994 2344444443
Q ss_pred CCCE
Q 047036 614 EAPL 617 (634)
Q Consensus 614 ~~~i 617 (634)
|..+
T Consensus 409 D~t~ 412 (459)
T KOG0272|consen 409 DNTV 412 (459)
T ss_pred Ccce
Confidence 4443
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.6e-26 Score=240.96 Aligned_cols=254 Identities=13% Similarity=0.086 Sum_probs=193.6
Q ss_pred cEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
...++.+ .|...++.|+ ...||...... ....|.||+. ..+..|.|.- +..-|++++.|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----~~~~l~gH~~~v~~~~fhP~~------~~~~lat~s~D----- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----LLQTLRGHTSRVGAAVFHPVD------SDLNLATASAD----- 240 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcc-----eeEEEeccccceeeEEEccCC------CccceeeeccC-----
Confidence 3555555 7888888875 66777765532 4557888854 3778888874 23345666664
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
+++++|++.+...+..|.||...| .-|+|+|+ |+.|+|+|.|.|-++||++++..+ ....||+..
T Consensus 241 -gtvklw~~~~e~~l~~l~gH~~RV--s~VafHPs--------G~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~--- 305 (459)
T KOG0272|consen 241 -GTVKLWKLSQETPLQDLEGHLARV--SRVAFHPS--------GKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKG--- 305 (459)
T ss_pred -CceeeeccCCCcchhhhhcchhhh--eeeeecCC--------Cceeeecccccchhhcccccchhh-Hhhcccccc---
Confidence 799999999999999999999876 45699999 678999999999999999997653 234466554
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
+.+++|.+|| .+++||.|..-||||++++| +...|.||..+|.+|+|||+|..||+ |.|++++||
T Consensus 306 ------------v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVW 372 (459)
T KOG0272|consen 306 ------------VFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVW 372 (459)
T ss_pred ------------cceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEe
Confidence 4678999999 68899999999999999996 78889999999999999999999999 999999999
Q ss_pred EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhh
Q 047036 490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQV 568 (634)
Q Consensus 490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v 568 (634)
|++.. +.|-+-|.|... ...+.|.|. .| ..|+| |-|+.+.||+-+.
T Consensus 373 DLR~r---------------------~~ly~ipAH~nl-VS~Vk~~p~-------~g---~fL~TasyD~t~kiWs~~~- 419 (459)
T KOG0272|consen 373 DLRMR---------------------SELYTIPAHSNL-VSQVKYSPQ-------EG---YFLVTASYDNTVKIWSTRT- 419 (459)
T ss_pred eeccc---------------------ccceecccccch-hhheEeccc-------CC---eEEEEcccCcceeeecCCC-
Confidence 98731 124445666533 134666663 14 56766 6799999998652
Q ss_pred hcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036 569 KNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF 602 (634)
Q Consensus 569 ~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f 602 (634)
.++- =++.+|++.|..+..
T Consensus 420 --~~~~-------------ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 420 --WSPL-------------KSLAGHEGKVISLDI 438 (459)
T ss_pred --cccc-------------hhhcCCccceEEEEe
Confidence 2111 257888888887776
No 10
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=218.08 Aligned_cols=268 Identities=18% Similarity=0.275 Sum_probs=189.3
Q ss_pred CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+-++||-| -|+.|++.+ .+|++|.... |. .+.++++| |...- +. ...-|...+.+++.|
T Consensus 17 qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~----liktYsgh----G~EVl-D~--~~s~Dnskf~s~GgD---- 80 (307)
T KOG0316|consen 17 QGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GA----LIKTYSGH----GHEVL-DA--ALSSDNSKFASCGGD---- 80 (307)
T ss_pred ccceEEEEEccCCCEEEEcCCCceEEeecccc-cc----eeeeecCC----Cceee-ec--cccccccccccCCCC----
Confidence 345999999 799999974 6888887544 42 34455564 22111 00 112344557777776
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPV 409 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V 409 (634)
+.|.+||++|||++++|.||...|+ .+.|+-+ ...++|||.|.+|++||.|++. .+||.|....+.
T Consensus 81 --k~v~vwDV~TGkv~Rr~rgH~aqVN--tV~fNee--------sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~- 147 (307)
T KOG0316|consen 81 --KAVQVWDVNTGKVDRRFRGHLAQVN--TVRFNEE--------SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG- 147 (307)
T ss_pred --ceEEEEEcccCeeeeecccccceee--EEEecCc--------ceEEEeccccceeEEEEcccCCCCccchhhhhcCc-
Confidence 6899999999999999999999875 5599876 5799999999999999999874 578887643332
Q ss_pred cccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL 488 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL 488 (634)
++++..+ +..|+.||.||++|.||++.++ . .-.-.++||++|+||+||+.+|+ +.|++|||
T Consensus 148 --------------V~Si~v~-~heIvaGS~DGtvRtydiR~G~-l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 148 --------------VSSIDVA-EHEIVAGSVDGTVRTYDIRKGT-L--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred --------------eeEEEec-ccEEEeeccCCcEEEEEeecce-e--ehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence 3444332 3369999999999999976653 2 22346789999999999999998 89999999
Q ss_pred EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036 489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
.|-. +|+.+..|.||.... .. ..++|+. .+.++++ |.|++|++|||..
T Consensus 210 lDk~----tGklL~sYkGhkn~e--------------------yk-ldc~l~q------sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 210 LDKE----TGKLLKSYKGHKNME--------------------YK-LDCCLNQ------SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred cccc----hhHHHHHhcccccce--------------------ee-eeeeecc------cceeEEeccCCceEEEEEecc
Confidence 9954 799999999997521 11 2456652 2345555 7899999999974
Q ss_pred hhcccccccccccCCcceeeEEEeccCCC-eeeeccccCccccCCCCCCCEEEEcCCc
Q 047036 568 VKNSAHECYRNQQGLKSCYCYKIVLKDES-IVESRFMHDKFAVTDSPEAPLVVATPMK 624 (634)
Q Consensus 568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~-i~~~~f~~d~f~~~~~~~~~iivA~~~~ 624 (634)
...- -++...... |.+..| |+.- ..+|+|+-+-
T Consensus 259 ~~~~----------------sk~~~~~~v~v~dl~~-hp~~-------~~f~~A~~~~ 292 (307)
T KOG0316|consen 259 ETQI----------------SKLSVVSTVIVTDLSC-HPTM-------DDFITATGHG 292 (307)
T ss_pred ceee----------------eeeccCCceeEEeeec-ccCc-------cceeEecCCc
Confidence 3321 244455554 556666 6544 2556666543
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=230.85 Aligned_cols=239 Identities=17% Similarity=0.209 Sum_probs=186.2
Q ss_pred CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGK 329 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~ 329 (634)
+.-+|.+.| ++++.++.| .++++|..... +......+|. ++..++++|++.. |.+++.|
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~WVlcvawsPDgk~--------iASG~~d--- 178 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNWVLCVAWSPDGKK--------IASGSKD--- 178 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCC-----CcceeecCCccEEEEEEECCCcch--------hhccccC---
Confidence 445999999 999999987 48888986554 2455667774 4578888888754 4445544
Q ss_pred CCCCcEEEEeCCCCcEE-EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036 330 PQAPGVQQLDIETGKIV-TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 330 ~~~~TIrlWDleTGK~V-~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
++|++||.++|+.+ +.|.||+..+ ..++|-|--.. ++++.+||+|-||+|+|||+..+.+ +..+.||..+
T Consensus 179 ---g~I~lwdpktg~~~g~~l~gH~K~I--t~Lawep~hl~---p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~ 249 (480)
T KOG0271|consen 179 ---GSIRLWDPKTGQQIGRALRGHKKWI--TALAWEPLHLV---PPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTAS 249 (480)
T ss_pred ---CeEEEecCCCCCcccccccCcccce--eEEeecccccC---CCccceecccCCCCEEEEEccCceE-EEEeccCccc
Confidence 79999999998765 6799999985 56699884222 2357999999999999999988765 6778777654
Q ss_pred ccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC-----------CCCCE
Q 047036 409 VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT-----------YDGKW 477 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS-----------pDGk~ 477 (634)
++|+..-.+|+|+|||.|++||+|+...++ +...|.||+.+|++|++| |-|++
T Consensus 250 ---------------VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~ 313 (480)
T KOG0271|consen 250 ---------------VTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRK 313 (480)
T ss_pred ---------------eEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhcccccccccc
Confidence 589999999999999999999999998875 778899999999999998 34555
Q ss_pred -------------------------EEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036 478 -------------------------ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD 531 (634)
Q Consensus 478 -------------------------LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~ 531 (634)
|+| |.|.++.||+.. ..-+++...+||... .+.
T Consensus 314 ~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~l------------------Vn~ 372 (480)
T KOG0271|consen 314 PKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQAL------------------VNH 372 (480)
T ss_pred CCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhh------------------eee
Confidence 999 889999999954 233455556666531 134
Q ss_pred cccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 532 NKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 532 i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
+.|+|+ + ++|++ |-|+.|.+|+-.
T Consensus 373 V~fSPd--------~---r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 373 VSFSPD--------G---RYIASASFDKSVKLWDGR 397 (480)
T ss_pred EEECCC--------c---cEEEEeecccceeeeeCC
Confidence 677777 4 78877 679999999976
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=218.74 Aligned_cols=207 Identities=18% Similarity=0.203 Sum_probs=160.7
Q ss_pred EEEeee-CCCeEEEec---CeeeEEEccCCceec-ceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHN-KGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~-~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
+++.+| |-+.||+-| ++--||......-++ ..+...|.+|+. ...+.|.++ +.||+++.|
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---------~~ilT~SGD----- 165 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---------NHILTGSGD----- 165 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC---------CceEecCCC-----
Confidence 789999 999999976 677788875321111 112334667732 345555543 346666665
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
.|+.+||+++|+.++.|.||...| -.++++|.. ++.++||+-|++.++||+|.+.+ +|++.||.+
T Consensus 166 -~TCalWDie~g~~~~~f~GH~gDV--~slsl~p~~-------~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghes---- 230 (343)
T KOG0286|consen 166 -MTCALWDIETGQQTQVFHGHTGDV--MSLSLSPSD-------GNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHES---- 230 (343)
T ss_pred -ceEEEEEcccceEEEEecCCcccE--EEEecCCCC-------CCeEEecccccceeeeeccCcce-eEeeccccc----
Confidence 799999999999999999999987 345999941 68999999999999999999865 799987765
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
.+.+|+|.|+| -+|+||.|+++||||++..+ ....+. .--.+|++|+||..||+|.+ -.|.++.
T Consensus 231 -----------DINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 231 -----------DINSVRFFPSGDAFATGSDDATCRLYDLRADQ-ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN 298 (343)
T ss_pred -----------ccceEEEccCCCeeeecCCCceeEEEeecCCc-EEeeeccCcccCCceeEEEcccccEEEeeecCCcee
Confidence 35789999999 69999999999999987653 233332 34468999999999999999 7899999
Q ss_pred EEEcccccCCCCeeeeecCCCC
Q 047036 488 LICTLFSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~gh~~ 509 (634)
+||+. +|+-...+.||-+
T Consensus 299 vWDtl----k~e~vg~L~GHeN 316 (343)
T KOG0286|consen 299 VWDTL----KGERVGVLAGHEN 316 (343)
T ss_pred Eeecc----ccceEEEeeccCC
Confidence 99986 7887778888875
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=9.9e-24 Score=232.27 Aligned_cols=238 Identities=18% Similarity=0.255 Sum_probs=176.8
Q ss_pred cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
....+.+ +|+.+++.+ ..|.+|...... . +...++.+| ..+..++|+|++. .|++++.|
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~--~-~~~~~l~~h~~~v~~~~fs~d~~--------~l~s~s~D----- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIK--S-NLLRELSGHTRGVSDVAFSPDGS--------YLLSGSDD----- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCCcEEEeeccccc--c-hhhccccccccceeeeEECCCCc--------EEEEecCC-----
Confidence 3455666 788777765 577777762211 0 122333444 2346777877764 45666654
Q ss_pred CCcEEEEeC-CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 332 APGVQQLDI-ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 332 ~~TIrlWDl-eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
++||+||+ ..|+++++++||...| ..++|+|+ +++++||+.|++||+||++++. ++..|.+|.++
T Consensus 225 -~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~--------g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~-- 290 (456)
T KOG0266|consen 225 -KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPD--------GNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDG-- 290 (456)
T ss_pred -ceEEEeeccCCCeEEEEecCCCCce--EEEEecCC--------CCEEEEecCCCcEEEEeccCCe-EEEeeeccCCc--
Confidence 79999999 6679999999999987 45699998 6899999999999999999854 56888877764
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc-ccccccCCCCC--eEEEEECCCCCEEEE-EcCCc
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ-AKTAFPGLGSP--ITHVDVTYDGKWILG-TTDTY 485 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~-akt~L~GH~d~--ItsVdfSpDGk~LlS-S~D~t 485 (634)
+++++|+++| +|++||.||.||+||+.++.. +...+.++..+ ++++.|||+|++|++ +.|++
T Consensus 291 -------------is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 291 -------------ISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred -------------eEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 5789999999 799999999999999988632 24567776655 999999999999999 88899
Q ss_pred EEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEe
Q 047036 486 LILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWD 564 (634)
Q Consensus 486 IrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWd 564 (634)
|++||+. .+.+...+.+|.... ++. |.+..+ ++ | .+|++ +.|..|.+||
T Consensus 358 ~~~w~l~----~~~~~~~~~~~~~~~----~~~---------------~~~~~~---~~-~---~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 358 LKLWDLR----SGKSVGTYTGHSNLV----RCI---------------FSPTLS---TG-G---KLIYSGSEDGSVYVWD 407 (456)
T ss_pred EEEEEcc----CCcceeeecccCCcc----eeE---------------eccccc---CC-C---CeEEEEeCCceEEEEe
Confidence 9999986 688888888887420 111 111111 21 3 56666 6799999999
Q ss_pred Chh
Q 047036 565 FQQ 567 (634)
Q Consensus 565 l~~ 567 (634)
+..
T Consensus 408 ~~s 410 (456)
T KOG0266|consen 408 SSS 410 (456)
T ss_pred CCc
Confidence 984
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.91 E-value=2e-23 Score=233.72 Aligned_cols=192 Identities=15% Similarity=0.181 Sum_probs=162.1
Q ss_pred CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGK 329 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~ 329 (634)
.+-+.-+.+ +|+.|++.+ ..+++|-.... +..+.++|| -|+--+.|+|-+- .+++.+
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-----s~~V~y~GH~~PVwdV~F~P~Gy---------YFatas---- 512 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-----SCLVIYKGHLAPVWDVQFAPRGY---------YFATAS---- 512 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccc-----eeEEEecCCCcceeeEEecCCce---------EEEecC----
Confidence 445777777 999999986 58999987553 356677787 3445567777763 333333
Q ss_pred CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
||+|.|+|....-+.+|.|.||-..|. +++|+|+ +.++|+||.|+|||+||+.++.. |+.+.||.++
T Consensus 513 -~D~tArLWs~d~~~PlRifaghlsDV~--cv~FHPN--------s~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~- 579 (707)
T KOG0263|consen 513 -HDQTARLWSTDHNKPLRIFAGHLSDVD--CVSFHPN--------SNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGP- 579 (707)
T ss_pred -CCceeeeeecccCCchhhhcccccccc--eEEECCc--------ccccccCCCCceEEEEEcCCCcE-EEEecCCCCc-
Confidence 348999999999999999999999985 6699998 68999999999999999998764 7888888765
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
++|++++|+| +||+|+.||.|+|||+.+++ ...+|.||.+.|.+|.||.||..||+ +.|++|+
T Consensus 580 --------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 580 --------------VTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred --------------eEEEEEcCCCceEeecccCCcEEEEEcCCCc-chhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence 5899999999 89999999999999999875 77889999999999999999999999 9999999
Q ss_pred EEEcc
Q 047036 488 LICTL 492 (634)
Q Consensus 488 LWD~~ 492 (634)
|||+.
T Consensus 645 lWD~~ 649 (707)
T KOG0263|consen 645 LWDLT 649 (707)
T ss_pred EEEch
Confidence 99976
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=222.51 Aligned_cols=191 Identities=19% Similarity=0.277 Sum_probs=150.2
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
++.+++++.+ +++++|++.+++ .++++.+|...| .-++|+|+ +..+++|+.|++||+||+..
T Consensus 171 g~~l~~~~~~------~~i~~~~~~~~~~~~~~~l~~h~~~v--~~~~fs~d--------~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 171 GRALAAASSD------GLIRIWKLEGIKSNLLRELSGHTRGV--SDVAFSPD--------GSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred CCeEEEccCC------CcEEEeecccccchhhccccccccce--eeeEECCC--------CcEEEEecCCceEEEeeccC
Confidence 3445555554 699999999999 889999999987 46699999 67999999999999999966
Q ss_pred CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp 473 (634)
.+..++++.||... ++|++|+|+| .|+|||.|++|||||+.++ .++..|.+|.++|++|+|++
T Consensus 235 ~~~~~~~l~gH~~~---------------v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTY---------------VTSVAFSPDGNLLVSGSDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred CCeEEEEecCCCCc---------------eEEEEecCCCCEEEEecCCCcEEEEeccCC-eEEEeeeccCCceEEEEECC
Confidence 65667899888754 4789999999 8999999999999999987 48899999999999999999
Q ss_pred CCCEEEE-EcCCcEEEEEcccccCCCC--eeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036 474 DGKWILG-TTDTYLILICTLFSDKDGK--TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER 550 (634)
Q Consensus 474 DGk~LlS-S~D~tIrLWD~~~~~~~G~--~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~ 550 (634)
||++|++ +.|+.|+|||+. +|. ++..+.++... . ..+-..|++. + ..
T Consensus 299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~--------------------~-~~~~~~fsp~---~--~~ 348 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENS--------------------A-PVTSVQFSPN---G--KY 348 (456)
T ss_pred CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCC--------------------C-ceeEEEECCC---C--cE
Confidence 9999999 889999999986 454 33334433321 0 2233445441 3 33
Q ss_pred EEEEEcCCeEEEEeChhhh
Q 047036 551 HLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 551 ~IvtStg~~viiWdl~~v~ 569 (634)
.++++.|+.+.+||+....
T Consensus 349 ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EEEecCCCeEEEEEccCCc
Confidence 4455668899999998543
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=198.39 Aligned_cols=183 Identities=11% Similarity=0.142 Sum_probs=141.4
Q ss_pred CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEe
Q 047036 264 LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLD 339 (634)
Q Consensus 264 ~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWD 339 (634)
+|++|.+.+ .++++|....+. ....|.||+ .+.+++|+|+. ++|++++.| +||++|+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~-----~t~~f~GH~~dVlsva~s~dn--------~qivSGSrD------kTiklwn 133 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGE-----STRRFVGHTKDVLSVAFSTDN--------RQIVSGSRD------KTIKLWN 133 (315)
T ss_pred cCCceEEeccccceEEEEEecCCc-----EEEEEEecCCceEEEEecCCC--------ceeecCCCc------ceeeeee
Confidence 688888876 477778765532 344677873 34677777665 567777765 7999999
Q ss_pred CCCCcEEEEEecc--CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036 340 IETGKIVTEWKFE--KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ 417 (634)
Q Consensus 340 leTGK~V~~lkgH--~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~ 417 (634)
+- |.+.-+...+ .+.| +.+.|+|... ...|+++|.|++||+||++.- ++.+++.||++-
T Consensus 134 t~-g~ck~t~~~~~~~~WV--scvrfsP~~~------~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~--------- 194 (315)
T KOG0279|consen 134 TL-GVCKYTIHEDSHREWV--SCVRFSPNES------NPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGY--------- 194 (315)
T ss_pred ec-ccEEEEEecCCCcCcE--EEEEEcCCCC------CcEEEEccCCceEEEEccCCc-chhhcccccccc---------
Confidence 98 5555555444 6776 5679999731 358999999999999999863 344566665542
Q ss_pred cccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 418 FSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 418 y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
++.+++|||| .+|+|+.||.+.|||+..++ ....|+ |.++|.+++|||+--||++..+..|+|||+.
T Consensus 195 ------v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 195 ------VNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-NLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ------EEEEEECCCCCEEecCCCCceEEEEEccCCc-eeEecc-CCCeEeeEEecCCceeEeeccCCceEEEecc
Confidence 5788999999 68999999999999998765 556665 8999999999999888888889999999976
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.9e-23 Score=212.85 Aligned_cols=247 Identities=16% Similarity=0.205 Sum_probs=191.2
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN 385 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~ 385 (634)
+|...+++.+...++++++.| .||++||.+||++++.++||++.|. . ++|+.. |.+++++|.|=
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d------~tikv~D~~tg~~e~~LrGHt~sv~-d-i~~~a~--------Gk~l~tcSsDl 172 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASED------ATIKVFDTETGELERSLRGHTDSVF-D-ISFDAS--------GKYLATCSSDL 172 (406)
T ss_pred cceeeeeeccCceEEEEecCC------ceEEEEEccchhhhhhhhcccccee-E-EEEecC--------ccEEEecCCcc
Confidence 445555555555556666554 6999999999999999999999873 4 478766 57899999999
Q ss_pred eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036 386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS 464 (634)
Q Consensus 386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d 464 (634)
.+++||...-..+++.+.||. ..++|++|-|.| +|+|+|.|.+|+.|+..++ -++.+|+||..
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~---------------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg-~cv~t~~~h~e 236 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHE---------------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTG-YCVKTFPGHSE 236 (406)
T ss_pred chhheeHHHHHHHHHHhcCcc---------------cceeeEEEEecCCeeeecccccceeEEecccc-eeEEeccCchH
Confidence 999999976322345555543 346899999988 9999999999999999998 49999999999
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT 543 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t 543 (634)
+|..|+++.||..||| +.|.+|++|-+. +++|+..|.+|.- +..++.+.|+-.. .++++- |
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh----~vEci~wap~~~~---~~i~~a-------t 298 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEH----PVECIAWAPESSY---PSISEA-------T 298 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEec----cchhhhhhhcccc----ceEEEEecccccC---cchhhc-------c
Confidence 9999999999999999 999999999975 6778888888863 2245666666441 123322 2
Q ss_pred cCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc--CccccCCCCCCCEEE
Q 047036 544 ENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH--DKFAVTDSPEAPLVV 619 (634)
Q Consensus 544 ~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~--d~f~~~~~~~~~iiv 619 (634)
+.++.-+.+++ |-|+.+.+||+.. |. |. +.|+.|++=|-++.| | .+|.++|..|+.|=|
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~t---g~------------cL-~tL~ghdnwVr~~af-~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVST---GM------------CL-FTLVGHDNWVRGVAF-SPGGKYILSCADDKTLRV 360 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccC---Ce------------EE-EEEecccceeeeeEE-cCCCeEEEEEecCCcEEE
Confidence 22223355555 7899999999873 32 33 899999999999999 7 789999887887644
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.89 E-value=1.2e-20 Score=220.09 Aligned_cols=242 Identities=17% Similarity=0.177 Sum_probs=164.7
Q ss_pred CcEEEeee-CCCeEEEec---CeeeEEEccC---CceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036 256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYN---RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDG 328 (634)
Q Consensus 256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~---~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~ 328 (634)
+.+.++++ +|+.+++.| .+|.||.... .+...+.....+.++..+.+..|.| ...++|++++.|
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-------~~~~~las~~~D-- 554 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNS-------YIKSQVASSNFE-- 554 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEecc-------CCCCEEEEEeCC--
Confidence 34778888 888888765 5899998532 1111111122222221122333332 234567777665
Q ss_pred CCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036 329 KPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 329 ~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
++|++||+.+++.+..+++|.+.| ..++|+|.. +.+|+||+.|++|++||++++.+ +..+..
T Consensus 555 ----g~v~lWd~~~~~~~~~~~~H~~~V--~~l~~~p~~-------~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~---- 616 (793)
T PLN00181 555 ----GVVQVWDVARSQLVTEMKEHEKRV--WSIDYSSAD-------PTLLASGSDDGSVKLWSINQGVS-IGTIKT---- 616 (793)
T ss_pred ----CeEEEEECCCCeEEEEecCCCCCE--EEEEEcCCC-------CCEEEEEcCCCEEEEEECCCCcE-EEEEec----
Confidence 799999999999999999999986 456999731 57999999999999999997654 444431
Q ss_pred ccccccccccccCcceEEEEE-CCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036 409 VLHWTQGHQFSRGTNFQCFAS-TGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY 485 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~-s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t 485 (634)
...+.|+++ +++| +||+|+.||+|++||+...+.....+.+|..+|++|.|+ +|.+|++ +.|++
T Consensus 617 ------------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ 683 (793)
T PLN00181 617 ------------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT 683 (793)
T ss_pred ------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE
Confidence 124567777 4567 799999999999999876433455788999999999997 7889998 99999
Q ss_pred EEEEEccccc--CCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036 486 LILICTLFSD--KDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI 562 (634)
Q Consensus 486 IrLWD~~~~~--~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii 562 (634)
|+|||+.... ..++.+..|.||.... ..+.|++. + .+|++ +.|+.|.+
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i------------------~~v~~s~~--------~---~~lasgs~D~~v~i 734 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVK------------------NFVGLSVS--------D---GYIATGSETNEVFV 734 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCe------------------eEEEEcCC--------C---CEEEEEeCCCEEEE
Confidence 9999986311 1234455566554210 11333332 2 35555 77999999
Q ss_pred EeCh
Q 047036 563 WDFQ 566 (634)
Q Consensus 563 Wdl~ 566 (634)
|+..
T Consensus 735 w~~~ 738 (793)
T PLN00181 735 YHKA 738 (793)
T ss_pred EECC
Confidence 9965
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=1.4e-19 Score=173.06 Aligned_cols=253 Identities=14% Similarity=0.186 Sum_probs=174.0
Q ss_pred CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
....++.+ +++.+++.| ..|.+|...... ....+..|. .+...+.+..+++.|++++.+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~~----- 72 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKGHT-------GPVRDVAASADGTYLASGSSD----- 72 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEecCC-------cceeEEEECCCCCEEEEEcCC-----
Confidence 34667777 676666654 477788765432 122233331 122234444555667777654
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++|++||+.+++.+..+.+|...+ ..+.|+|+ +.++++|+.|+.|++||++..+ .+..+..|.
T Consensus 73 -~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~----- 135 (289)
T cd00200 73 -KTIRLWDLETGECVRTLTGHTSYV--SSVAFSPD--------GRILSSSSRDKTIKVWDVETGK-CLTTLRGHT----- 135 (289)
T ss_pred -CeEEEEEcCcccceEEEeccCCcE--EEEEEcCC--------CCEEEEecCCCeEEEEECCCcE-EEEEeccCC-----
Confidence 689999999999999999998765 45688887 4688888889999999998654 344554332
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
..+.++++++++ +|++|+.||.|++||+.+++ ....+..|..+|++++|+|+|++|++ +.|+.|++|
T Consensus 136 ----------~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 136 ----------DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred ----------CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence 246888999987 67777779999999998653 66778899999999999999988888 779999999
Q ss_pred EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEc-CCeEEEEeChhh
Q 047036 490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATV-GKFSVIWDFQQV 568 (634)
Q Consensus 490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtSt-g~~viiWdl~~v 568 (634)
|+. .++.+..|.+|... ...+.|.+. ...++++. ++.+.+|++..
T Consensus 205 d~~----~~~~~~~~~~~~~~------------------i~~~~~~~~-----------~~~~~~~~~~~~i~i~~~~~- 250 (289)
T cd00200 205 DLS----TGKCLGTLRGHENG------------------VNSVAFSPD-----------GYLLASGSEDGTIRVWDLRT- 250 (289)
T ss_pred ECC----CCceecchhhcCCc------------------eEEEEEcCC-----------CcEEEEEcCCCcEEEEEcCC-
Confidence 975 35554444433310 012333332 24666655 99999999873
Q ss_pred hcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036 569 KNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF 602 (634)
Q Consensus 569 ~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f 602 (634)
+.. ...+..+...|....|
T Consensus 251 --~~~-------------~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 251 --GEC-------------VQTLSGHTNSVTSLAW 269 (289)
T ss_pred --cee-------------EEEccccCCcEEEEEE
Confidence 222 1345566677887776
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=1.5e-20 Score=209.61 Aligned_cols=252 Identities=17% Similarity=0.205 Sum_probs=185.8
Q ss_pred EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP 333 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~ 333 (634)
.-+++| +|+++++.| .||.||....+- .+++|.-|++ -+.++-+...++.|++++-| +
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts-------~Vt~v~f~~~g~~llssSLD------G 414 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTS-------GVTAVQFTARGNVLLSSSLD------G 414 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCC-------ceEEEEEEecCCEEEEeecC------C
Confidence 456677 899999987 699999865542 5678877742 23344456677888888886 7
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-CeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-NRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
|||.||+.+++..|+|...... ..++++..|. |++++.|+.| -.|++|++.+++ ++..|.||.+||
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~-QfscvavD~s--------GelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPV--- 481 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPI-QFSCVAVDPS--------GELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPV--- 481 (893)
T ss_pred eEEeeeecccceeeeecCCCce-eeeEEEEcCC--------CCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcc---
Confidence 9999999999999999988753 2345566665 7888888877 579999999975 568888887764
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
++++|+|.| .|||||.|.|||+||+-.......+|+ +...+++|+|+|||+-|+. |.|+.|-+||
T Consensus 482 ------------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 482 ------------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ------------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 788999999 799999999999999865322445565 6778999999999999998 9999999999
Q ss_pred cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
+. .+.......|+..-....-+.=+++.++.. ....|+.-+|+.+ | .+|++ +.-++|+++++.
T Consensus 549 ~~----~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa---~~K~Ftti~ySaD---G---~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 549 IK----EAVQVGSIDGRKDLSGGRKETDRITAENSA---KGKTFTTICYSAD---G---KCILAGGESNSICIYDVP 612 (893)
T ss_pred hh----hceeeccccchhhccccccccceeehhhcc---cCCceEEEEEcCC---C---CEEEecCCcccEEEEECc
Confidence 86 454444455544311010111233444443 3467888888752 3 45554 789999999985
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.87 E-value=7.1e-22 Score=205.50 Aligned_cols=266 Identities=17% Similarity=0.277 Sum_probs=187.7
Q ss_pred EEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 258 SLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 258 ~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
+..+-|.|. .+|+ +++|.||...+-. ....+.||+ |.. +...=+.++|+++++| .|
T Consensus 200 VYClQYDD~-kiVSGlrDnTikiWD~n~~~-----c~~~L~GHt---GSV------LCLqyd~rviisGSSD------sT 258 (499)
T KOG0281|consen 200 VYCLQYDDE-KIVSGLRDNTIKIWDKNSLE-----CLKILTGHT---GSV------LCLQYDERVIVSGSSD------ST 258 (499)
T ss_pred eEEEEecch-hhhcccccCceEEeccccHH-----HHHhhhcCC---CcE------EeeeccceEEEecCCC------ce
Confidence 455555444 3444 4788888754432 112356662 322 2223345588888886 69
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCCCcccc
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDSPVLHW 412 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s~V~~~ 412 (634)
|++||++||+++.++-+|...| +.+ .|+. .+++|+|.|.+|.+||+..... +...|.||...|
T Consensus 259 vrvWDv~tge~l~tlihHceaV-Lhl-rf~n----------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV--- 323 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAV-LHL-RFSN----------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV--- 323 (499)
T ss_pred EEEEeccCCchhhHHhhhccee-EEE-EEeC----------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe---
Confidence 9999999999999999999987 343 7774 5999999999999999986532 223455665543
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
..|-|+. .+|+++|.|.|||+|+..++. ...+|.||.-.|-++- ..|+.++| |.|+||||||+
T Consensus 324 ------------NvVdfd~-kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQ--Yr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 324 ------------NVVDFDD-KYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred ------------eeecccc-ceEEEecCCceEEEEecccee-eehhhhcccccceehh--ccCeEEEecCCCceEEEEec
Confidence 3334433 399999999999999999984 8899999998887654 57999999 99999999998
Q ss_pred ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhc
Q 047036 492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKN 570 (634)
Q Consensus 492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~ 570 (634)
. -|+|+..++||..-. |+ -+|+ ++.||+ +-|+.|.||||...++
T Consensus 388 ~----~G~cLRvLeGHEeLv----Rc-------------------iRFd--------~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 388 E----CGACLRVLEGHEELV----RC-------------------IRFD--------NKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred c----ccHHHHHHhchHHhh----hh-------------------eeec--------CceeeeccccceEEEEecccccC
Confidence 6 699999999997411 11 2454 257777 5699999999987665
Q ss_pred ccccccccccCCcceeeEEEeccCCCeeeeccccCcc-ccCCCCCCCEEE
Q 047036 571 SAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF-AVTDSPEAPLVV 619 (634)
Q Consensus 571 ~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f-~~~~~~~~~iiv 619 (634)
-... ...-|. -.++.+.+.|.-.+| |.| ..+++-+..|+|
T Consensus 433 pra~------~~~~Cl-~~lv~hsgRVFrLQF--D~fqIvsssHddtILi 473 (499)
T KOG0281|consen 433 PRAP------ASTLCL-RTLVEHSGRVFRLQF--DEFQIISSSHDDTILI 473 (499)
T ss_pred Cccc------ccchHH-HhhhhccceeEEEee--cceEEEeccCCCeEEE
Confidence 3211 222344 257788889998887 446 445555556655
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=3.6e-21 Score=200.91 Aligned_cols=203 Identities=14% Similarity=0.238 Sum_probs=162.7
Q ss_pred EEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
+.+|+. +.+.|.+.| .+|++|....+.| .+.+.||. ...|+++++.+..| ++++.|
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----kltltGhi~~vr~vavS~rHpYl--------Fs~ged------ 214 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----KLTLTGHIETVRGVAVSKRHPYL--------FSAGED------ 214 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccCeE-----EEeecchhheeeeeeecccCceE--------EEecCC------
Confidence 777777 778888876 4888888777542 34566773 34899999888654 455554
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++|+.||+++.|+||.+-||-.+| ..+++.|. -..|++|+.|.++|+||+|++.. |..|.||..+|.
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V--~~L~lhPT--------ldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~-- 281 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGV--YCLDLHPT--------LDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVA-- 281 (460)
T ss_pred CeeEEEechhhhhHHHhcccccee--EEEecccc--------ceeEEecCCcceEEEeeecccce-EEEecCCCCcce--
Confidence 799999999999999999999998 35699997 57999999999999999999765 688988887652
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
+.+|..-+++|++||.|++|||||+..++ ...+|..|.-.|.+++..|.-...||++-..|+-|++-
T Consensus 282 ------------~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p 348 (460)
T KOG0285|consen 282 ------------SVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLP 348 (460)
T ss_pred ------------eEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCccceeccCC
Confidence 22333457899999999999999998875 55678889999999999999988888777789999974
Q ss_pred cccCCCCeeeeecCCCC
Q 047036 493 FSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 493 ~~~~~G~~~~gF~gh~~ 509 (634)
.|..++-+.||.+
T Consensus 349 ----~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 349 ----EGEFLQNLSGHNA 361 (460)
T ss_pred ----ccchhhccccccc
Confidence 6776666666654
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.86 E-value=6.2e-20 Score=204.82 Aligned_cols=198 Identities=16% Similarity=0.264 Sum_probs=153.5
Q ss_pred ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036 308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL 387 (634)
Q Consensus 308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI 387 (634)
...|.+++|+++|++++.| +.|++||..+|-|+.+|.-|+.+| +.++|+.. ++.++|.|-||||
T Consensus 353 i~~l~YSpDgq~iaTG~eD------gKVKvWn~~SgfC~vTFteHts~V--t~v~f~~~--------g~~llssSLDGtV 416 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAED------GKVKVWNTQSGFCFVTFTEHTSGV--TAVQFTAR--------GNVLLSSSLDGTV 416 (893)
T ss_pred eeeEEECCCCcEEEeccCC------CcEEEEeccCceEEEEeccCCCce--EEEEEEec--------CCEEEEeecCCeE
Confidence 4456666777888888876 799999999999999999999997 57799987 6899999999999
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeE-EEEECCC-cEEEEeccccccccccccCCCCC
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSLDG-KIRLYSKTSMRQAKTAFPGLGSP 465 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~DG-tIRLWD~~t~r~akt~L~GH~d~ 465 (634)
|.||+.-.++ .+++.. | ...+|+|+|..|.|-| ..|+.|. .|.+|++++++ .+-.|.||.+|
T Consensus 417 RAwDlkRYrN-fRTft~---P-----------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgP 480 (893)
T KOG0291|consen 417 RAWDLKRYRN-FRTFTS---P-----------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGP 480 (893)
T ss_pred Eeeeecccce-eeeecC---C-----------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCc
Confidence 9999975544 355531 1 3457999999999954 4556554 79999999995 88999999999
Q ss_pred eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccccc
Q 047036 466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTE 544 (634)
Q Consensus 466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~ 544 (634)
|.+|+|+|+|..|+| |-|+|||+||+.- ..|+ .-+ |++.- + .-.+.|.|+
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~--s~~~-vEt--------------l~i~s-d----vl~vsfrPd------- 531 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFS--SSGT-VET--------------LEIRS-D----VLAVSFRPD------- 531 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeec--cCce-eee--------------Eeecc-c----eeEEEEcCC-------
Confidence 999999999999999 9999999999752 1111 111 11110 1 124778877
Q ss_pred CCCCceEEEEEcCCeEEEEeChhhh
Q 047036 545 NGKQERHLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 545 ~g~~E~~IvtStg~~viiWdl~~v~ 569 (634)
| ++..|++-++-|.+||.+.-.
T Consensus 532 -G--~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 532 -G--KELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred -C--CeEEEEEecceEEEEEhhhce
Confidence 4 457777789999999987443
No 24
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3e-19 Score=184.28 Aligned_cols=279 Identities=18% Similarity=0.253 Sum_probs=184.5
Q ss_pred CCcEEEeee-CCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
++...++.| .++.+++. ++.+++|.... |.+.+ .+. .+.+-++.+.. ....+.++.++..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~----ti~------skkyG~~~~~F-th~~~~~i~sStk---- 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVK----TIN------SKKYGVDLACF-THHSNTVIHSSTK---- 77 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCC-Cceee----Eee------cccccccEEEE-ecCCceEEEccCC----
Confidence 456888999 77877775 35888888544 42222 121 11122222222 2233334444442
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
+|.+||+.++.+.|.||.|.||++.|+ .++.+|- ++.++|||.|++||+||+|..+|.. .+.
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~--sL~~sP~--------~d~FlS~S~D~tvrLWDlR~~~cqg-~l~------- 139 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVN--SLSVSPK--------DDTFLSSSLDKTVRLWDLRVKKCQG-LLN------- 139 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEE--EEEecCC--------CCeEEecccCCeEEeeEecCCCCce-EEe-------
Confidence 347999999999999999999999874 4588886 6899999999999999999877632 111
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-ccccccc---CCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFP---GLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
... -.++|+.|.| .+|+|..-+.|+|||++... -..+++. +-...++.|.|||||++||- |..+
T Consensus 140 --------~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 140 --------LSG--RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred --------cCC--CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC
Confidence 011 1356899999 57888877799999987641 1223332 34567899999999999987 8889
Q ss_pred cEEEEEcccccCCCCeeeeecCCCCCC-CCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036 485 YLILICTLFSDKDGKTKTGFSGRMGNK-IPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI 562 (634)
Q Consensus 485 tIrLWD~~~~~~~G~~~~gF~gh~~~~-~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii 562 (634)
.+.|.|+- +|..+.+|.++.... .| ....|+|+ + +.|.+ +.|+.|.+
T Consensus 210 ~~~~lDAf----~G~~~~tfs~~~~~~~~~----------------~~a~ftPd--------s---~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 210 FIYLLDAF----DGTVKSTFSGYPNAGNLP----------------LSATFTPD--------S---KFVLSGSDDGTIHV 258 (311)
T ss_pred cEEEEEcc----CCcEeeeEeeccCCCCcc----------------eeEEECCC--------C---cEEEEecCCCcEEE
Confidence 99999985 788899999887532 11 12455555 3 45555 66799999
Q ss_pred EeChhhhcccccccccccCCcceeeEEEec-cCCCeeeeccccCccccCCCCCCCEEEEcCCce
Q 047036 563 WDFQQVKNSAHECYRNQQGLKSCYCYKIVL-KDESIVESRFMHDKFAVTDSPEAPLVVATPMKV 625 (634)
Q Consensus 563 Wdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~-~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v 625 (634)
|+++ .|.+. -+... ....+..++| .+.|.+=.+.+..|+.=+|+..
T Consensus 259 w~~~---tg~~v-------------~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 259 WNLE---TGKKV-------------AVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred EEcC---CCcEe-------------eEecCCCCCCcccccc-CCceeeeeecCceEEEEecccc
Confidence 9996 33322 12222 3445555567 6666322222358888888754
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.86 E-value=6.2e-21 Score=199.20 Aligned_cols=178 Identities=16% Similarity=0.215 Sum_probs=144.1
Q ss_pred CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036 299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST 378 (634)
Q Consensus 299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l 378 (634)
|++++++.|... .+.+++.| +||++||++||++.-++.||-..|+ -++||+- ..++
T Consensus 153 WVr~vavdP~n~--------wf~tgs~D------rtikIwDlatg~LkltltGhi~~vr--~vavS~r--------HpYl 208 (460)
T KOG0285|consen 153 WVRSVAVDPGNE--------WFATGSAD------RTIKIWDLATGQLKLTLTGHIETVR--GVAVSKR--------HPYL 208 (460)
T ss_pred eEEEEeeCCCce--------eEEecCCC------ceeEEEEcccCeEEEeecchhheee--eeeeccc--------CceE
Confidence 446777777653 34455554 7999999999999999999999875 4588875 5799
Q ss_pred EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036 379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt 457 (634)
|+++.|+.|+.||+... ++|+.+.||.+.| .|++..|.- .|++||.|.+||+||+++ |....
T Consensus 209 Fs~gedk~VKCwDLe~n-kvIR~YhGHlS~V---------------~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~ 271 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYN-KVIRHYHGHLSGV---------------YCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVH 271 (460)
T ss_pred EEecCCCeeEEEechhh-hhHHHhcccccee---------------EEEeccccceeEEecCCcceEEEeeecc-cceEE
Confidence 99999999999999874 5667777777654 688888765 899999999999999988 45778
Q ss_pred cccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCc
Q 047036 458 AFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDS 525 (634)
Q Consensus 458 ~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~ 525 (634)
.|.||..+|.+|-+.|-.-.|++ |+|++|||||++ .|+...+++.|- ..-|.|.|.|...
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~----agkt~~tlt~hk----ksvral~lhP~e~ 332 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR----AGKTMITLTHHK----KSVRALCLHPKEN 332 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeec----cCceeEeeeccc----ceeeEEecCCchh
Confidence 99999999999999975555666 999999999987 688888888775 3457888877653
No 26
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.86 E-value=4.6e-21 Score=205.83 Aligned_cols=247 Identities=17% Similarity=0.280 Sum_probs=180.7
Q ss_pred CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc
Q 047036 273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE 352 (634)
Q Consensus 273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH 352 (634)
-+|.||....++ ....+|.+|. .|.+.+.+++++..+|+++.| ++|++||+|||+++..|.
T Consensus 237 ~~vklW~vy~~~----~~lrtf~gH~-------k~Vrd~~~s~~g~~fLS~sfD------~~lKlwDtETG~~~~~f~-- 297 (503)
T KOG0282|consen 237 GLVKLWNVYDDR----RCLRTFKGHR-------KPVRDASFNNCGTSFLSASFD------RFLKLWDTETGQVLSRFH-- 297 (503)
T ss_pred ceEEEEEEecCc----ceehhhhcch-------hhhhhhhccccCCeeeeeecc------eeeeeeccccceEEEEEe--
Confidence 366667664443 1233455652 355555666777888899887 799999999999999875
Q ss_pred CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC
Q 047036 353 KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD 432 (634)
Q Consensus 353 ~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d 432 (634)
.+.|. .++.|.|+. .+.+++|+.|+.|+.||+|++. +||.+..|.++| ..+.|-++
T Consensus 298 ~~~~~-~cvkf~pd~-------~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i---------------~~i~F~~~ 353 (503)
T KOG0282|consen 298 LDKVP-TCVKFHPDN-------QNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAI---------------LDITFVDE 353 (503)
T ss_pred cCCCc-eeeecCCCC-------CcEEEEecCCCcEEEEeccchH-HHHHHHhhhhhe---------------eeeEEccC
Confidence 44453 778999993 2789999999999999999864 678877665543 45677788
Q ss_pred C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCC
Q 047036 433 G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGN 510 (634)
Q Consensus 433 G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~ 510 (634)
| ++++.|.|+++|+|+....--.+..+.-+.....+|..+|+|.|+++ |+|++|.|+.+..... -.....|+||...
T Consensus 354 g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r-~nkkK~feGh~va 432 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR-LNKKKRFEGHSVA 432 (503)
T ss_pred CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc-cCHhhhhcceecc
Confidence 8 89999999999999976532233334445566789999999999999 9999999999765432 2334568888741
Q ss_pred CCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEE
Q 047036 511 KIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK 589 (634)
Q Consensus 511 ~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~ 589 (634)
.+...+.|+|+ | .+|++ .+++.|.+||.+..+.-. +
T Consensus 433 ----------------Gys~~v~fSpD--------G---~~l~SGdsdG~v~~wdwkt~kl~~----------------~ 469 (503)
T KOG0282|consen 433 ----------------GYSCQVDFSPD--------G---RTLCSGDSDGKVNFWDWKTTKLVS----------------K 469 (503)
T ss_pred ----------------CceeeEEEcCC--------C---CeEEeecCCccEEEeechhhhhhh----------------c
Confidence 11234666666 4 46666 678999999999766421 5
Q ss_pred EeccCCCeeeeccccCcc
Q 047036 590 IVLKDESIVESRFMHDKF 607 (634)
Q Consensus 590 i~~~~~~i~~~~f~~d~f 607 (634)
++.|++.++.+.+ ||--
T Consensus 470 lkah~~~ci~v~w-HP~e 486 (503)
T KOG0282|consen 470 LKAHDQPCIGVDW-HPVE 486 (503)
T ss_pred cccCCcceEEEEe-cCCC
Confidence 7888899998888 6654
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.86 E-value=5e-20 Score=188.63 Aligned_cols=192 Identities=14% Similarity=0.188 Sum_probs=161.3
Q ss_pred eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036 311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW 390 (634)
Q Consensus 311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW 390 (634)
|-+..|++.|++++-| +.+-+||.-|...++-+.-...+| +++ +|+|. |+.+|+|+-||..-++
T Consensus 61 ~~ws~Dsr~ivSaSqD------GklIvWDs~TtnK~haipl~s~WV-MtC-A~sPS--------g~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQD------GKLIVWDSFTTNKVHAIPLPSSWV-MTC-AYSPS--------GNFVACGGLDNKCSIY 124 (343)
T ss_pred eEecCCcCeEEeeccC------CeEEEEEcccccceeEEecCceeE-EEE-EECCC--------CCeEEecCcCceeEEE
Confidence 4445677788888876 689999999999999999999988 454 99998 7899999999999999
Q ss_pred EcCCC--C---ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036 391 DMRDR--S---GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP 465 (634)
Q Consensus 391 D~R~~--~---~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ 465 (634)
++.++ . .+.+.|.+|.. | ++|+-|.+|++|++||.|.++-|||+.+++ ..+.|.||..-
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtg----------y-----lScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gD 188 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTG----------Y-----LSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGD 188 (343)
T ss_pred ecccccccccceeeeeecCccc----------e-----eEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCccc
Confidence 99865 2 23345666643 2 578888999999999999999999999984 78899999999
Q ss_pred eEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036 466 ITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT 543 (634)
Q Consensus 466 ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t 543 (634)
|.+|+++| ++++.+| +||++.+|||++ .|.+++.|.||..+. +.+.|.|.
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDI------------------Nsv~ffP~------ 240 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDI------------------NSVRFFPS------ 240 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeecc----CcceeEeeccccccc------------------ceEEEccC------
Confidence 99999999 9999999 999999999997 789999999998643 45788887
Q ss_pred cCCCCceEEEE-EcCCeEEEEeChh
Q 047036 544 ENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 544 ~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
| ..++| |.|.....+|+..
T Consensus 241 --G---~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 241 --G---DAFATGSDDATCRLYDLRA 260 (343)
T ss_pred --C---CeeeecCCCceeEEEeecC
Confidence 3 34555 6688888999973
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.4e-21 Score=198.52 Aligned_cols=203 Identities=15% Similarity=0.232 Sum_probs=150.0
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
.++.|-|.+ +.|++++.| +||+.|++.||-++.+|.+|...|. +++++.| |.++|+
T Consensus 197 S~V~f~P~g--------d~ilS~srD------~tik~We~~tg~cv~t~~~h~ewvr--~v~v~~D--------Gti~As 252 (406)
T KOG0295|consen 197 SSVFFLPLG--------DHILSCSRD------NTIKAWECDTGYCVKTFPGHSEWVR--MVRVNQD--------GTIIAS 252 (406)
T ss_pred eeEEEEecC--------Ceeeecccc------cceeEEecccceeEEeccCchHhEE--EEEecCC--------eeEEEe
Confidence 455566654 678888876 6999999999999999999999874 7788888 789999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCc--cccccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEecccccccc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPV--LHWTQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAK 456 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V--~~~~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~ak 456 (634)
|+.|++|++|=+.++.|. +.+.+|..+| ..|.-...|. .++-...+.+ | ++++||.|++||+||+.+++ +.
T Consensus 253 ~s~dqtl~vW~~~t~~~k-~~lR~hEh~vEci~wap~~~~~---~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-cL 327 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCK-AELREHEHPVECIAWAPESSYP---SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-CL 327 (406)
T ss_pred cCCCceEEEEEeccchhh-hhhhccccceEEEEecccccCc---chhhccCCCCCccEEEeecccceEEEEeccCCe-EE
Confidence 999999999999987653 5666666543 1122111111 1111111222 3 79999999999999999985 88
Q ss_pred ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036 457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH 535 (634)
Q Consensus 457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft 535 (634)
.+|.||..+|.+|+|+|-|+||+| ..|++|++||++ .++|+..+..|. |. ...+-|.
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~----~~~cmk~~~ah~-----------------hf-vt~lDfh 385 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK----NLQCMKTLEAHE-----------------HF-VTSLDFH 385 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec----cceeeeccCCCc-----------------ce-eEEEecC
Confidence 999999999999999999999999 889999999986 566665554332 22 1235555
Q ss_pred cccccccccCCCCceEEEEEcCCeEEEEe
Q 047036 536 GGHFSWVTENGKQERHLVATVGKFSVIWD 564 (634)
Q Consensus 536 ~a~Fs~~t~~g~~E~~IvtStg~~viiWd 564 (634)
... ...+.+|.+..+.+|-
T Consensus 386 ~~~----------p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 386 KTA----------PYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCC----------ceEEeccccceeeeee
Confidence 441 1344447899999994
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.85 E-value=3.2e-19 Score=179.70 Aligned_cols=212 Identities=15% Similarity=0.205 Sum_probs=152.8
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM 392 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~ 392 (634)
.|+++|.+++. ..||++|+.+++ .+.+|.+|++.| .+|.|..+ |+..+|||.|+++|+||+
T Consensus 50 pdk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNV--taVgF~~d--------grWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 50 PDKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNV--TAVGFQCD--------GRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred CCcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCce--EEEEEeec--------CeEEEecCCCceEEEEec
Confidence 33445556655 369999999986 599999998865 67899988 689999999999999999
Q ss_pred CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036 393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV 471 (634)
Q Consensus 393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf 471 (634)
|...+ +.+ |....++.+++..|+. .|++|..+|-||+||+.........+|.-.-+|.++.+
T Consensus 113 R~~~~--qR~---------------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 113 RSLSC--QRN---------------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV 175 (311)
T ss_pred cCccc--chh---------------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence 98543 333 3344566888888875 89999999999999987632223456777789999999
Q ss_pred CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCce
Q 047036 472 TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQER 550 (634)
Q Consensus 472 SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~ 550 (634)
-|||++|++ ...+...+|++.. +. +..+ |.|.+...+ .+---+++.||+. + +
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~----~~----~~s~------------l~P~~k~~a-h~~~il~C~lSPd---~---k 228 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLN----HQ----TASE------------LEPVHKFQA-HNGHILRCLLSPD---V---K 228 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccC----CC----cccc------------ceEhhheec-ccceEEEEEECCC---C---c
Confidence 999999999 8899999999752 11 1111 112221111 1112246777752 3 6
Q ss_pred EEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036 551 HLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF 602 (634)
Q Consensus 551 ~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f 602 (634)
+|+| |+|..|+||+.+..+.+.+ +|..+..=|=|..|
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~---------------~l~gh~rWvWdc~F 266 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLEL---------------VLTGHQRWVWDCAF 266 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEE---------------EeecCCceEEeeee
Confidence 8877 7899999999987755443 46666655666665
No 30
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=2.2e-19 Score=201.58 Aligned_cols=185 Identities=16% Similarity=0.195 Sum_probs=143.1
Q ss_pred CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc
Q 047036 273 LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE 352 (634)
Q Consensus 273 ~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH 352 (634)
.+|.+|.....- .....+.||. ..+..+.+...+..|++++.| +|+|+||..+|+|+..+.||
T Consensus 228 ~tl~~~~~~~~~----~i~~~l~GH~-------g~V~~l~~~~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~gh 290 (537)
T KOG0274|consen 228 STLHLWDLNNGY----LILTRLVGHF-------GGVWGLAFPSGGDKLVSGSTD------KTERVWDCSTGECTHSLQGH 290 (537)
T ss_pred ceeEEeecccce----EEEeeccCCC-------CCceeEEEecCCCEEEEEecC------CcEEeEecCCCcEEEEecCC
Confidence 577777754432 1222366762 233344444456678888876 69999999999999999999
Q ss_pred CCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC
Q 047036 353 KDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD 432 (634)
Q Consensus 353 ~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d 432 (634)
.+.| .++.+.+ -.+++||.|++|++|++..+.+ ++++.+|..+| .|+... .
T Consensus 291 ~stv--~~~~~~~----------~~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V---------------~~v~~~-~ 341 (537)
T KOG0274|consen 291 TSSV--RCLTIDP----------FLLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV---------------NCVQLD-E 341 (537)
T ss_pred CceE--EEEEccC----------ceEeeccCCceEEEEeccCcce-EEEeccccccE---------------EEEEec-C
Confidence 9865 3334443 4789999999999999998654 67787676654 566655 5
Q ss_pred CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC-CeeeeecCCCC
Q 047036 433 GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG-KTKTGFSGRMG 509 (634)
Q Consensus 433 G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G-~~~~gF~gh~~ 509 (634)
+.|++||.||+|++||+.+++ +++.|.||...|++|.|.+. ..+++ ++|++|++||+. ++ +|+.+|.+|..
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTS 414 (537)
T ss_pred CEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC----chhhhhhhhcCCcc
Confidence 599999999999999999884 89999999999999988776 78888 999999999986 45 78888988874
No 31
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.83 E-value=6.8e-19 Score=190.34 Aligned_cols=267 Identities=19% Similarity=0.183 Sum_probs=171.2
Q ss_pred EEEeee-CCCeEEEec---CeeeEEEccC--Cc-eecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSD---LGLQVYRNYN--RG-IHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G---~~igV~k~~~--~g-l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
++|++. +.++.++.| ..|..|.... -. -.|+ .+....+| .+++.+|+|.+ .|||.-+..
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr-~l~P~E~h-~i~sl~ys~Tg--------~~iLvvsg~---- 235 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFR-QLQPCETH-QINSLQYSVTG--------DQILVVSGS---- 235 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhh-ccCccccc-ccceeeecCCC--------CeEEEEecC----
Confidence 788888 778777777 4788776311 00 1111 01111122 23566677654 344433221
Q ss_pred CCCcEEEEeCCCCcEEEEE-------------eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEW-------------KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG 397 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~l-------------kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~ 397 (634)
-.++|.|-. |..+-++ +||...+ +..+|.|+.| +.++|++.|+|+|+||+.....
T Consensus 236 --aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~l--t~g~whP~~k-------~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 236 --AQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAEL--TCGCWHPDNK-------EEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred --cceeEEccC-CceeeeeeccchhhhhhhccCCceeee--eccccccCcc-------cceEEecCCCcEEEEecCCchh
Confidence 368899854 6555443 6888765 5669999965 6899999999999999875432
Q ss_pred eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccc-cCCCC--CeEEEEEC
Q 047036 398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAF-PGLGS--PITHVDVT 472 (634)
Q Consensus 398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L-~GH~d--~ItsVdfS 472 (634)
-.+.+. |.. .++ ..+++++++++++| .||.|+.||.|.+||..+.. +..... .+|.. .|+||.||
T Consensus 304 q~qVik-~k~-----~~g----~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 304 QLQVIK-TKP-----AGG----KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred heeEEe-ecc-----CCC----cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 223332 000 011 34567888999999 79999999999999964321 111222 36776 89999999
Q ss_pred CCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036 473 YDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH 551 (634)
Q Consensus 473 pDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~ 551 (634)
+||++||| +.|.+|+|||++ +-.+++..++|-.. ...=+-|+||+. ++.
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLr---q~kkpL~~~tgL~t---------------------~~~~tdc~FSPd------~kl 423 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLR---QFKKPLNVRTGLPT---------------------PFPGTDCCFSPD------DKL 423 (641)
T ss_pred cccchhhhccCCCceeeeecc---ccccchhhhcCCCc---------------------cCCCCccccCCC------ceE
Confidence 99999999 999999999987 34555555544331 112234566651 467
Q ss_pred EEEEc-------CCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 552 LVATV-------GKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 552 IvtSt-------g~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
|+|++ -+.++.+|-.+ ++ .-|+|..-..+|+.+.. |++-
T Consensus 424 i~TGtS~~~~~~~g~L~f~d~~t-----~d-----------~v~ki~i~~aSvv~~~W-hpkL 469 (641)
T KOG0772|consen 424 ILTGTSAPNGMTAGTLFFFDRMT-----LD-----------TVYKIDISTASVVRCLW-HPKL 469 (641)
T ss_pred EEecccccCCCCCceEEEEeccc-----ee-----------eEEEecCCCceEEEEee-cchh
Confidence 77732 34577777442 11 23788888888998888 8876
No 32
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.83 E-value=3e-18 Score=163.89 Aligned_cols=195 Identities=17% Similarity=0.265 Sum_probs=143.4
Q ss_pred ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036 308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL 387 (634)
Q Consensus 308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI 387 (634)
...+.+++++++|++++.+ +.|++||+.+++.+..+.+|...+ ..+.|+|+ ++.+++|+.|+.|
T Consensus 12 i~~~~~~~~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~~--------~~~l~~~~~~~~i 75 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGD------GTIKVWDLETGELLRTLKGHTGPV--RDVAASAD--------GTYLASGSSDKTI 75 (289)
T ss_pred EEEEEEcCCCCEEEEeecC------cEEEEEEeeCCCcEEEEecCCcce--eEEEECCC--------CCEEEEEcCCCeE
Confidence 3344444555667776654 689999999999999999998865 34589987 5689999999999
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
++||++.+.. +..+..|. ..+.++++++++ .|++++.||.|++||+.+.+ ....+.+|..+|
T Consensus 76 ~i~~~~~~~~-~~~~~~~~---------------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i 138 (289)
T cd00200 76 RLWDLETGEC-VRTLTGHT---------------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWV 138 (289)
T ss_pred EEEEcCcccc-eEEEeccC---------------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcE
Confidence 9999987543 34454332 246788898887 56777779999999998653 667788999999
Q ss_pred EEEEECCCCCEEEEEc-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccC
Q 047036 467 THVDVTYDGKWILGTT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTEN 545 (634)
Q Consensus 467 tsVdfSpDGk~LlSS~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~ 545 (634)
++++|+|++++|+++. |+.|++||+. .++.+..|..|... ...+.|.|.
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~------------------i~~~~~~~~-------- 188 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGE------------------VNSVAFSPD-------- 188 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccc------------------cceEEECCC--------
Confidence 9999999999999955 9999999975 35544444433210 012333333
Q ss_pred CCCceEEEEEcCCeEEEEeChh
Q 047036 546 GKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 546 g~~E~~IvtStg~~viiWdl~~ 567 (634)
+ ...++++.++.+.+||+..
T Consensus 189 ~--~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 189 G--EKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred c--CEEEEecCCCcEEEEECCC
Confidence 2 3456667799999999974
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.6e-19 Score=195.60 Aligned_cols=255 Identities=16% Similarity=0.205 Sum_probs=188.9
Q ss_pred CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036 299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST 378 (634)
Q Consensus 299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l 378 (634)
|++++.|-+.+ +-|+++++| ..||+++..|++.|.+|..|.+.++ .++++|. ...+
T Consensus 57 PvRa~kfiaRk--------nWiv~GsDD------~~IrVfnynt~ekV~~FeAH~DyIR--~iavHPt--------~P~v 112 (794)
T KOG0276|consen 57 PVRAAKFIARK--------NWIVTGSDD------MQIRVFNYNTGEKVKTFEAHSDYIR--SIAVHPT--------LPYV 112 (794)
T ss_pred chhhheeeecc--------ceEEEecCC------ceEEEEecccceeeEEeecccccee--eeeecCC--------CCeE
Confidence 44555555443 567888775 7899999999999999999999864 5699997 4689
Q ss_pred EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccc
Q 047036 379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAK 456 (634)
Q Consensus 379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~ak 456 (634)
+|+|+|-+||+||-...-.+.|++.||..- +-++||.|.. .+||||.|+|||+|.+-+. -+.
T Consensus 113 LtsSDDm~iKlW~we~~wa~~qtfeGH~Hy---------------VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENEWACEQTFEGHEHY---------------VMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred EecCCccEEEEeeccCceeeeeEEcCcceE---------------EEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 999999999999998765567899887643 3578898864 7999999999999998765 377
Q ss_pred ccccCCCCCeEEEEECCCC--CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 457 TAFPGLGSPITHVDVTYDG--KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 457 t~L~GH~d~ItsVdfSpDG--k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
.+|.||...|++|++=|-| -||+| +.|.+|++||.+ +-.|+++++||..+. ..+.
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ----tk~CV~TLeGHt~Nv------------------s~v~ 234 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ----TKSCVQTLEGHTNNV------------------SFVF 234 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc----hHHHHHHhhcccccc------------------eEEE
Confidence 8899999999999998766 59999 889999999986 678999999998643 1245
Q ss_pred cccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEE--------EeccCCCeeeecccc
Q 047036 534 IHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK--------IVLKDESIVESRFMH 604 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~--------i~~~~~~i~~~~f~~ 604 (634)
|+|. | -.|++ |.|++|.||+-..-+.-+.-.| ||-...|-. ..++++-++-+..-.
T Consensus 235 fhp~-l----------piiisgsEDGTvriWhs~Ty~lE~tLn~----gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr 299 (794)
T KOG0276|consen 235 FHPE-L----------PIIISGSEDGTVRIWNSKTYKLEKTLNY----GLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR 299 (794)
T ss_pred ecCC-C----------cEEEEecCCccEEEecCcceehhhhhhc----CCceEEEEeecCCCCeEEEeccCCcEEEEccC
Confidence 5554 1 24555 7899999999776555444333 344444444 344555544333322
Q ss_pred CccccCCCCCCCEEEEcCCceeeeec
Q 047036 605 DKFAVTDSPEAPLVVATPMKVSSISL 630 (634)
Q Consensus 605 d~f~~~~~~~~~iivA~~~~v~~~~~ 630 (634)
+.=.++-++..+||=|-.+++-.+++
T Consensus 300 eeP~vsMd~~gKIiwa~~~ei~~~~~ 325 (794)
T KOG0276|consen 300 EEPAVSMDSNGKIIWAVHSEIQAVNL 325 (794)
T ss_pred CCCceeecCCccEEEEcCceeeeeec
Confidence 22233433446788888777777766
No 34
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=5.1e-19 Score=199.63 Aligned_cols=147 Identities=9% Similarity=0.076 Sum_probs=119.6
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-------EEecccC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-------VQNMVKG 405 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-------Vq~l~gh 405 (634)
+.|++|++.+...+..+.+|...| ..++|+|+. +.+||||+.|++|++||++.+... +..+.+|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V--~~lafsP~~-------~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSI--LDLQFNPCF-------SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCE--EEEEEcCCC-------CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 689999998888999999999986 456999962 469999999999999999864321 2233333
Q ss_pred CCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
. ..+.+++++|++ . ||+||.||+|||||+.+++ ....+. |...|.+|+|+|||++|++ +.
T Consensus 125 ~---------------~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 125 K---------------KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred C---------------CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCCCEEEEEec
Confidence 2 346899999987 4 6899999999999998764 445565 6788999999999999998 67
Q ss_pred CCcEEEEEcccccCCCCeeeeecCCCC
Q 047036 483 DTYLILICTLFSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~~gF~gh~~ 509 (634)
|++|+|||++ +|+.+..|.+|.+
T Consensus 188 D~~IrIwD~R----sg~~i~tl~gH~g 210 (568)
T PTZ00420 188 GKHMHIIDPR----KQEIASSFHIHDG 210 (568)
T ss_pred CCEEEEEECC----CCcEEEEEecccC
Confidence 9999999987 6788888888875
No 35
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=9.6e-19 Score=194.97 Aligned_cols=146 Identities=12% Similarity=0.162 Sum_probs=116.6
Q ss_pred cEEEEeCCCCcEEE---EEeccCCCcceeEEEEec-CCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC------ceEEecc
Q 047036 334 GVQQLDIETGKIVT---EWKFEKDGTDITMRDITN-DTKSSQLDPSESTFLGLDDNRLCQWDMRDRS------GIVQNMV 403 (634)
Q Consensus 334 TIrlWDleTGK~V~---~lkgH~~~V~I~vvsfsP-d~K~~q~~~g~~laSGS~D~tIklWD~R~~~------~~Vq~l~ 403 (634)
.+.+|..++|+... .+.||.+.| ..++|+| + +++|++|+.|++|++||+...+ .++..+.
T Consensus 53 ~~v~~~~~~G~~~~~~~~l~GH~~~V--~~v~fsP~d--------~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~ 122 (493)
T PTZ00421 53 TAVLKHTDYGKLASNPPILLGQEGPI--IDVAFNPFD--------PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ 122 (493)
T ss_pred eEEeeccccccCCCCCceEeCCCCCE--EEEEEcCCC--------CCEEEEEeCCCEEEEEecCCCccccccCcceEEec
Confidence 45555556666443 588999986 4569999 5 5799999999999999997642 1344555
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG- 480 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS- 480 (634)
+|.. .+.+++|+|++ .||+||.|++|||||+.+++ ....+.+|.++|++|+|+|||++|++
T Consensus 123 gH~~---------------~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 123 GHTK---------------KVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CCCC---------------cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 5543 35788999874 79999999999999998864 67789999999999999999999999
Q ss_pred EcCCcEEEEEcccccCCCCeeeeecCCCC
Q 047036 481 TTDTYLILICTLFSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 481 S~D~tIrLWD~~~~~~~G~~~~gF~gh~~ 509 (634)
+.|++|+|||++ +|+.+..+.+|.+
T Consensus 187 s~Dg~IrIwD~r----sg~~v~tl~~H~~ 211 (493)
T PTZ00421 187 SKDKKLNIIDPR----DGTIVSSVEAHAS 211 (493)
T ss_pred cCCCEEEEEECC----CCcEEEEEecCCC
Confidence 889999999986 5777777777754
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.82 E-value=4e-18 Score=199.10 Aligned_cols=146 Identities=13% Similarity=0.209 Sum_probs=117.6
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR 395 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~ 395 (634)
+.++|++++.| ++|++||+.+|+++.++..|.. |..+.|++.. +..+++|+.|++|++||+|..
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~~~~---v~~v~~~~~~-------g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKTKAN---ICCVQFPSES-------GRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEEEEEecCCC---eEEEEEeCCC-------CCEEEEEeCCCeEEEEECCCC
Confidence 55677788775 7999999999999999987753 3556885531 679999999999999999976
Q ss_pred CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccc-----cccccccCCCCCeEEEE
Q 047036 396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR-----QAKTAFPGLGSPITHVD 470 (634)
Q Consensus 396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r-----~akt~L~GH~d~ItsVd 470 (634)
+..+..+.+|... +++++|.++.+|++||.|++|||||+.... .....+.||...|+.++
T Consensus 651 ~~~~~~~~~h~~~---------------V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 651 KLPLCTMIGHSKT---------------VSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CccceEecCCCCC---------------EEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 5444566555443 567788766699999999999999986320 24567889999999999
Q ss_pred ECCCCCEEEE-EcCCcEEEEEcc
Q 047036 471 VTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 471 fSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
|+|+|.+|++ +.|++|+||+..
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECC
Confidence 9999999999 899999999964
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=7.7e-18 Score=180.83 Aligned_cols=230 Identities=13% Similarity=0.150 Sum_probs=177.2
Q ss_pred EEEeee-CCCeEEEecCeeeEEEc-cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036 258 SLTLGA-LDNSFLVSDLGLQVYRN-YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~~igV~k~-~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI 335 (634)
+-++.+ +|+++++.|+--|+.+. ..+| ..+..|..| --|.-.+=.+..++.||+++-| +|+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~tl~~H-------kgPI~slKWnk~G~yilS~~vD------~tt 300 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDG----NLISTLGQH-------KGPIFSLKWNKKGTYILSGGVD------GTT 300 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCc----hhhhhhhcc-------CCceEEEEEcCCCCEEEeccCC------ccE
Confidence 667777 78999998864444433 1222 122333333 2355566678889999999886 799
Q ss_pred EEEeCCCCcEEEEEeccCCC-cceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036 336 QQLDIETGKIVTEWKFEKDG-TDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ 414 (634)
Q Consensus 336 rlWDleTGK~V~~lkgH~~~-V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~ 414 (634)
-+||..+|.+.+.|..|... + -| .+-.+ ..+++.+.|+.|++.-+-..+ ++.++.||..+
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~l--DV-dW~~~---------~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~------ 361 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPAL--DV-DWQSN---------DEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGE------ 361 (524)
T ss_pred EEEeccCceEEEeeeeccCCcc--ce-EEecC---------ceEeecCCCceEEEEEecCCC-cceeeecccCc------
Confidence 99999999999999999875 2 23 44433 578999999999999886544 57788776544
Q ss_pred ccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC---------EEEE-EcC
Q 047036 415 GHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK---------WILG-TTD 483 (634)
Q Consensus 415 g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk---------~LlS-S~D 483 (634)
+.++-+.|.| .|||+|.|+|+|||..... .+...|.+|...|..+.+||+|. .||+ +.|
T Consensus 362 ---------V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 362 ---------VNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred ---------eEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 5788999988 7999999999999997654 37788999999999999999883 5777 999
Q ss_pred CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEE
Q 047036 484 TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVI 562 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vii 562 (634)
++|++||+. .|.++..|.+|..+. ..+.|+|. | +++++ +.|+-|.|
T Consensus 432 stV~lwdv~----~gv~i~~f~kH~~pV------------------ysvafS~~--------g---~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 432 STVKLWDVE----SGVPIHTLMKHQEPV------------------YSVAFSPN--------G---RYLASGSLDGCVHI 478 (524)
T ss_pred CeEEEEEcc----CCceeEeeccCCCce------------------EEEEecCC--------C---cEEEecCCCCeeEe
Confidence 999999986 799999999997532 35777776 4 56666 78999999
Q ss_pred EeCh
Q 047036 563 WDFQ 566 (634)
Q Consensus 563 Wdl~ 566 (634)
|+.+
T Consensus 479 ws~~ 482 (524)
T KOG0273|consen 479 WSTK 482 (524)
T ss_pred cccc
Confidence 9987
No 38
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=187.37 Aligned_cols=215 Identities=18% Similarity=0.233 Sum_probs=154.4
Q ss_pred EEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP 333 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~ 333 (634)
+.++.+ .|+..++-|+ .|.||...+.. ....+..|+ .|.+.+-+....+.++++++|+ +
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~-----iLR~~~ah~-------apv~~~~f~~~d~t~l~s~sDd-----~ 133 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRV-----ILRQLYAHQ-------APVHVTKFSPQDNTMLVSGSDD-----K 133 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHH-----HHHHHhhcc-------CceeEEEecccCCeEEEecCCC-----c
Confidence 666777 8999988886 55555532221 111233332 3444444444445555555554 8
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
.+++||+.++.++.++.||++.|+ +.+|+|.. +.+++|||.|++||+||+|+....+.+|.
T Consensus 134 v~k~~d~s~a~v~~~l~~htDYVR--~g~~~~~~-------~hivvtGsYDg~vrl~DtR~~~~~v~eln---------- 194 (487)
T KOG0310|consen 134 VVKYWDLSTAYVQAELSGHTDYVR--CGDISPAN-------DHIVVTGSYDGKVRLWDTRSLTSRVVELN---------- 194 (487)
T ss_pred eEEEEEcCCcEEEEEecCCcceeE--eeccccCC-------CeEEEecCCCceEEEEEeccCCceeEEec----------
Confidence 999999999988779999999986 45899862 46999999999999999998754455552
Q ss_pred cccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
++.++..+++-|.| .||+|+. +.||+||+.++++..+.+..|.-.||||++.-||+.|+| +-|+.++++|+
T Consensus 195 ------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 195 ------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred ------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 34566777887776 7888876 799999999766666666679999999999999999999 99999999996
Q ss_pred ccccCCCCeeeeecCCCCCCCCCce-eEeecCCCc
Q 047036 492 LFSDKDGKTKTGFSGRMGNKIPAPR-LLKLTPLDS 525 (634)
Q Consensus 492 ~~~~~~G~~~~gF~gh~~~~~p~pr-~L~L~Pe~~ 525 (634)
. +-+.+.++. + |.|. -+.+.|++.
T Consensus 268 t----~~Kvv~s~~--~----~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 268 T----NYKVVHSWK--Y----PGPVLSIAVSPDDQ 292 (487)
T ss_pred c----ceEEEEeee--c----ccceeeEEecCCCc
Confidence 4 445444443 2 4443 356666554
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.80 E-value=1.9e-18 Score=185.36 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=135.6
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.|++.-+.--+.+.+|.||.+.| .++.|.|. +.+|+|+|+|.|++||......+ +..|.+|+..+..-
T Consensus 339 ~~i~V~kv~~~~P~~t~~GH~g~V--~alk~n~t--------g~LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 339 GCIHVCKVGEDRPVKTFIGHHGEV--NALKWNPT--------GSLLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTI 407 (524)
T ss_pred ceEEEEEecCCCcceeeecccCce--EEEEECCC--------CceEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeE
Confidence 689999988778999999999987 46799997 78999999999999999876554 57787777543110
Q ss_pred ccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
.-.+.-++...| .| .||+++.|++|||||+..+. +..+|..|+.||.+|+|||||+|||+ +.|+.|.||
T Consensus 408 -------~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 408 -------KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIW 479 (524)
T ss_pred -------eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEec
Confidence 001111222223 34 69999999999999999884 78889999999999999999999999 999999999
Q ss_pred EcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036 490 CTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 490 D~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
+++ .|+..+.+.+.-+ + |. -+||- . | ...+++..++-+.+=||.
T Consensus 480 s~~----~~~l~~s~~~~~~----------------------I-fe-l~Wn~-~--G--~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STK----TGKLVKSYQGTGG----------------------I-FE-LCWNA-A--G--DKLGACASDGSVCVLDLR 523 (524)
T ss_pred ccc----chheeEeecCCCe----------------------E-EE-EEEcC-C--C--CEEEEEecCCCceEEEec
Confidence 986 5766555543321 1 11 23442 1 3 355666778888887774
No 40
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=5.8e-19 Score=199.36 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=172.1
Q ss_pred EEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036 259 LTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP 333 (634)
Q Consensus 259 LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~ 333 (634)
--++| |-|-+++.+- .|++|.-.-+ +.+.+|..| .|++|+.|.|...+ .+++++| .
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~FH~~qpl--------FVSGGDD------y 73 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVDFHPTQPL--------FVSGGDD------Y 73 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceeeecCCCCe--------EEecCCc------c
Confidence 33456 6777777663 4555442111 234456666 46788998888653 3344443 7
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
+|++|+..+.+|+-+|.||-+.|+ .+.|++. =..|+|+|+|.|||+|+..+++| |..|.||+.-
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVR--t~~FHhe--------yPWIlSASDDQTIrIWNwqsr~~-iavltGHnHY----- 137 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVR--TVFFHHE--------YPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHY----- 137 (1202)
T ss_pred EEEEEecccceehhhhccccceeE--EeeccCC--------CceEEEccCCCeEEEEeccCCce-EEEEecCceE-----
Confidence 999999999999999999999985 5699987 25899999999999999999876 6788888753
Q ss_pred cccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc----------------------------ccccccCCCC
Q 047036 414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ----------------------------AKTAFPGLGS 464 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~----------------------------akt~L~GH~d 464 (634)
+-|+.|.|.. .|||||.|.|||+||+.+.|. .|..|.||.-
T Consensus 138 ----------VMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR 207 (1202)
T KOG0292|consen 138 ----------VMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR 207 (1202)
T ss_pred ----------EEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence 4688899854 999999999999999977541 1234668999
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT 543 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t 543 (634)
.|+-++|.|-=-.|+| +.|..|+||...- -+-=.+-+..||+++. ..+-|+|- +
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnV------------------ssvlfhp~-----q 262 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNV------------------SSVLFHPH-----Q 262 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCc------------------ceEEecCc-----c
Confidence 9999999999999999 8899999998542 1222334567787643 23455554 1
Q ss_pred cCCCCceEEEE-EcCCeEEEEeChh
Q 047036 544 ENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 544 ~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
..|++ |.|+.+.|||+.+
T Consensus 263 ------~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 263 ------DLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ------ceeEecCCCccEEEEeccc
Confidence 35655 7899999999974
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.80 E-value=6.5e-18 Score=189.78 Aligned_cols=228 Identities=15% Similarity=0.223 Sum_probs=163.6
Q ss_pred EEEeeeC-CCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036 258 SLTLGAL-DNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP 333 (634)
Q Consensus 258 ~LavG~~-D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~ 333 (634)
+-++.++ ...+++.| .+++||....+. ....|.+|. ..+.+.+-....+++++.| .
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-----C~~~l~gh~---------stv~~~~~~~~~~~sgs~D------~ 311 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-----CTHSLQGHT---------SSVRCLTIDPFLLVSGSRD------N 311 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCc-----EEEEecCCC---------ceEEEEEccCceEeeccCC------c
Confidence 3444442 34455555 588999854443 222344542 1222333444455566665 6
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
||++|++++|++++.+.||.+.|+ + +.++ +..+++|+.|++|++||+++.++ +.+|.||..+|
T Consensus 312 tVkVW~v~n~~~l~l~~~h~~~V~-~-v~~~----------~~~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V---- 374 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRGHTGPVN-C-VQLD----------EPLLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRV---- 374 (537)
T ss_pred eEEEEeccCcceEEEeccccccEE-E-EEec----------CCEEEEEecCceEEEEEhhhcee-eeeecCCcceE----
Confidence 999999999999999999999764 3 3444 36999999999999999997654 78998887654
Q ss_pred cccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 414 QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.++.+.+..++++||.|++||+||+.++++++.+|.+|+.-|.++. ..++.|++ +.|++|++||+.
T Consensus 375 -----------~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 375 -----------YSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred -----------EEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEEEeecc
Confidence 5665555478999999999999999987348899999999885554 46789999 999999999986
Q ss_pred cccCCCCeeeeecCC-CCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036 493 FSDKDGKTKTGFSGR-MGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 493 ~~~~~G~~~~gF~gh-~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~ 569 (634)
.|+++.++.++ .+ .+.|... + ++..|+++.++.+.+||+....
T Consensus 442 ----~~~~~~~~~~~~~~---------------------~v~~l~~--------~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 442 ----EGECLRTLEGRHVG---------------------GVSALAL--------G-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ----cCceeeeeccCCcc---------------------cEEEeec--------C-cceEEEEecCCeeEEEecccCc
Confidence 78888888774 22 1221111 1 3567788999999999998443
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.79 E-value=6e-19 Score=186.76 Aligned_cols=205 Identities=13% Similarity=0.150 Sum_probs=154.4
Q ss_pred EEEeee-CCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036 258 SLTLGA-LDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ 336 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr 336 (634)
+-+|-. +++.-++.|+.-|=|.+-.+- ..+|..- .-..=+|...|-...++..++++..+ +.|+
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~------~fnFEti---lQaHDs~Vr~m~ws~~g~wmiSgD~g------G~iK 163 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGT------SFNFETI---LQAHDSPVRTMKWSHNGTWMISGDKG------GMIK 163 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCc------eeeHHHH---hhhhcccceeEEEccCCCEEEEcCCC------ceEE
Confidence 455666 888778877766666553321 2232210 11112567777777777777776553 8999
Q ss_pred EEeCCCCcEEEEEeccC-CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036 337 QLDIETGKIVTEWKFEK-DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 337 lWDleTGK~V~~lkgH~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g 415 (634)
+|+.. -..|..+.+|. ..| ..++|+|. ...++|+|+|++|+|||.+..... ..|.||.
T Consensus 164 yWqpn-mnnVk~~~ahh~eaI--RdlafSpn--------DskF~t~SdDg~ikiWdf~~~kee-~vL~GHg--------- 222 (464)
T KOG0284|consen 164 YWQPN-MNNVKIIQAHHAEAI--RDLAFSPN--------DSKFLTCSDDGTIKIWDFRMPKEE-RVLRGHG--------- 222 (464)
T ss_pred ecccc-hhhhHHhhHhhhhhh--heeccCCC--------CceeEEecCCCeEEEEeccCCchh-heeccCC---------
Confidence 99988 46677777776 655 46699996 578999999999999999875432 3455543
Q ss_pred cccccCcceEEEEECCC-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036 416 HQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 416 ~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
..+.|+...|. |.|||||.|+.|+|||.++++ ++.+|.+|...|.+|.|+|+|.|||+ |.|..++++|++
T Consensus 223 ------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR- 294 (464)
T KOG0284|consen 223 ------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR- 294 (464)
T ss_pred ------CCcceeccCCccceeEEccCCceeEeecCCCcc-hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh-
Confidence 24578888775 699999999999999999985 88999999999999999999999999 999999999987
Q ss_pred ccCCCCeeeeecCCCC
Q 047036 494 SDKDGKTKTGFSGRMG 509 (634)
Q Consensus 494 ~~~~G~~~~gF~gh~~ 509 (634)
.-+.+..|.+|..
T Consensus 295 ---~mkEl~~~r~Hkk 307 (464)
T KOG0284|consen 295 ---TMKELFTYRGHKK 307 (464)
T ss_pred ---HhHHHHHhhcchh
Confidence 3455677888874
No 43
>PTZ00420 coronin; Provisional
Probab=99.79 E-value=2.1e-17 Score=186.58 Aligned_cols=179 Identities=10% Similarity=0.023 Sum_probs=127.5
Q ss_pred cCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc------
Q 047036 272 DLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK------ 344 (634)
Q Consensus 272 G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK------ 344 (634)
|..+++++....+-. .....|.+|. ++..++|+|. +.++|++++.| ++|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~-------~~~lLASgS~D------gtIrIWDi~t~~~~~~~i 114 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC-------FSEILASGSED------LTIRVWEIPHNDESVKEI 114 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC-------CCCEEEEEeCC------CeEEEEECCCCCcccccc
Confidence 455555554332211 1234566663 3355556654 24567777765 799999998752
Q ss_pred --EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036 345 --IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT 422 (634)
Q Consensus 345 --~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~ 422 (634)
.+..+.+|...| ..++|+|++ ..++++|+.|++|++||++++.. +..+. | ..
T Consensus 115 ~~p~~~L~gH~~~V--~sVaf~P~g-------~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~---------------~~ 168 (568)
T PTZ00420 115 KDPQCILKGHKKKI--SIIDWNPMN-------YYIMCSSGFDSFVNIWDIENEKR-AFQIN-M---------------PK 168 (568)
T ss_pred ccceEEeecCCCcE--EEEEECCCC-------CeEEEEEeCCCeEEEEECCCCcE-EEEEe-c---------------CC
Confidence 345789999976 466999982 13568999999999999998653 33332 1 12
Q ss_pred ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE-----EEECCCCCEEEE-EcCC----cEEEEEc
Q 047036 423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH-----VDVTYDGKWILG-TTDT----YLILICT 491 (634)
Q Consensus 423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its-----VdfSpDGk~LlS-S~D~----tIrLWD~ 491 (634)
.+.+++++++| .||+++.|++|||||+++++ ....+.+|.+.+.+ ..|++|+.+|++ +.|+ +|+|||+
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 47899999999 78889999999999998864 66789999887543 346799999998 7664 7999998
Q ss_pred c
Q 047036 492 L 492 (634)
Q Consensus 492 ~ 492 (634)
+
T Consensus 248 r 248 (568)
T PTZ00420 248 K 248 (568)
T ss_pred C
Confidence 6
No 44
>PTZ00421 coronin; Provisional
Probab=99.79 E-value=2.7e-17 Score=183.39 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=142.7
Q ss_pred CcEEEeee-C-CCeEEEec---CeeeEEEccCCceec--ceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCC
Q 047036 256 VQSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIHN--KGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKD 327 (634)
Q Consensus 256 ~~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~~--~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~ 327 (634)
+.++++.+ + |+.+++.| .+|.||.....++.. ...+..+.+|. .+..+.|+|.. .++|++++.|
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-------~~iLaSgs~D- 147 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-------MNVLASAGAD- 147 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-------CCEEEEEeCC-
Confidence 45788888 5 77777764 589999876554311 11234566662 23445555542 2467777665
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036 328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
++|++||+++|+.+..+.+|.+.| ..++|+|+ +.+|++|+.|++|++||+|++. .+..+.+|.+
T Consensus 148 -----gtVrIWDl~tg~~~~~l~~h~~~V--~sla~spd--------G~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~ 211 (493)
T PTZ00421 148 -----MVVNVWDVERGKAVEVIKCHSDQI--TSLEWNLD--------GSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHAS 211 (493)
T ss_pred -----CEEEEEECCCCeEEEEEcCCCCce--EEEEEECC--------CCEEEEecCCCEEEEEECCCCc-EEEEEecCCC
Confidence 799999999999999999999976 45699998 6899999999999999999865 4567766654
Q ss_pred CccccccccccccCcceEEEEECCC-CeEEEEE----CCCcEEEEeccccccccccccC-CCCCeEEEEECCCCCEEEE-
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGS----LDGKIRLYSKTSMRQAKTAFPG-LGSPITHVDVTYDGKWILG- 480 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS----~DGtIRLWD~~t~r~akt~L~G-H~d~ItsVdfSpDGk~LlS- 480 (634)
.+ ...+.+.++ +.|++++ .|++|+|||++........+.. +...+..+.|+|||++|++
T Consensus 212 ~~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 212 AK--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred Cc--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEE
Confidence 21 123344554 4666543 5899999998764323333332 3345667789999999987
Q ss_pred E-cCCcEEEEEcccccCCCCeee
Q 047036 481 T-TDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 481 S-~D~tIrLWD~~~~~~~G~~~~ 502 (634)
+ .|++|++||+. +++...
T Consensus 278 gkgDg~Iriwdl~----~~~~~~ 296 (493)
T PTZ00421 278 SKGEGNIRCFELM----NERLTF 296 (493)
T ss_pred EeCCCeEEEEEee----CCceEE
Confidence 5 49999999986 455544
No 45
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-18 Score=197.06 Aligned_cols=249 Identities=15% Similarity=0.167 Sum_probs=173.8
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
+|.+|.|...- ||++ -|+++|++||-.-|.++.+|..|.+.|+ -++|+|. +.+++|
T Consensus 13 KglsFHP~rPw--------ILts------lHsG~IQlWDYRM~tli~rFdeHdGpVR--gv~FH~~--------qplFVS 68 (1202)
T KOG0292|consen 13 KGLSFHPKRPW--------ILTS------LHSGVIQLWDYRMGTLIDRFDEHDGPVR--GVDFHPT--------QPLFVS 68 (1202)
T ss_pred cceecCCCCCE--------EEEe------ecCceeeeehhhhhhHHhhhhccCCccc--eeeecCC--------CCeEEe
Confidence 78889998753 3444 2568999999999999999999999986 5599998 579999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
|++|..|++|+..+++| +-+|.||.+ | +..+.|.+.- .|+|+|.|.|||+|+.++. ++...|
T Consensus 69 GGDDykIkVWnYk~rrc-lftL~GHlD----------Y-----VRt~~FHheyPWIlSASDDQTIrIWNwqsr-~~iavl 131 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRC-LFTLLGHLD----------Y-----VRTVFFHHEYPWILSASDDQTIRIWNWQSR-KCIAVL 131 (1202)
T ss_pred cCCccEEEEEeccccee-hhhhccccc----------e-----eEEeeccCCCceEEEccCCCeEEEEeccCC-ceEEEE
Confidence 99999999999998876 467777754 3 3455666654 8999999999999999995 699999
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecC--C----C---ccccC
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTP--L----D---SHLAG 529 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~P--e----~---~~~~g 529 (634)
.||...|.+-.|.|....|+| |.|.|||+||+.--..+...-.+|..++... +.--.|.+ . | .|-.|
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~---~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ---QGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc---ccchhhcCCcCeeeeeeecccccc
Confidence 999999999999999999999 9999999999741110100000122222100 00000111 0 0 01111
Q ss_pred C-CcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccC--
Q 047036 530 T-DNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHD-- 605 (634)
Q Consensus 530 ~-~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d-- 605 (634)
. -..|+|. --.||+ +.|+-|.+|-+..-+.=..+ ..++|-.+|..+-| |+
T Consensus 209 VNwaAfhpT-----------lpliVSG~DDRqVKlWrmnetKaWEvD--------------tcrgH~nnVssvlf-hp~q 262 (1202)
T KOG0292|consen 209 VNWAAFHPT-----------LPLIVSGADDRQVKLWRMNETKAWEVD--------------TCRGHYNNVSSVLF-HPHQ 262 (1202)
T ss_pred cceEEecCC-----------cceEEecCCcceeeEEEeccccceeeh--------------hhhcccCCcceEEe-cCcc
Confidence 1 1345544 137777 45788999998766654444 34567777887777 77
Q ss_pred ccccCCCCCCCEEE
Q 047036 606 KFAVTDSPEAPLVV 619 (634)
Q Consensus 606 ~f~~~~~~~~~iiv 619 (634)
+-..+.+.|+.|=|
T Consensus 263 ~lIlSnsEDksirV 276 (1202)
T KOG0292|consen 263 DLILSNSEDKSIRV 276 (1202)
T ss_pred ceeEecCCCccEEE
Confidence 44556555555433
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.79 E-value=1.4e-18 Score=186.87 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=155.3
Q ss_pred eEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCC
Q 047036 290 VSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDT 367 (634)
Q Consensus 290 ~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~ 367 (634)
.+.+++||+ .++...|.|.+.. +||+++.| +.|+||++-. |+||++|.||...|. -++|+++
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~h-------LlLS~gmD------~~vklW~vy~~~~~lrtf~gH~k~Vr--d~~~s~~- 269 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGH-------LLLSGGMD------GLVKLWNVYDDRRCLRTFKGHRKPVR--DASFNNC- 269 (503)
T ss_pred heeeccCCccccchhhhccceee-------EEEecCCC------ceEEEEEEecCcceehhhhcchhhhh--hhhcccc-
Confidence 456677773 3467778887653 46777775 7999999977 999999999999875 4588887
Q ss_pred CCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEE
Q 047036 368 KSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIR 445 (634)
Q Consensus 368 K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIR 445 (634)
|..++|+|.|++|++||+.++++ ++.+. .+....|+-|.|++ .+++|+.|+.||
T Consensus 270 -------g~~fLS~sfD~~lKlwDtETG~~-~~~f~----------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~ 325 (503)
T KOG0282|consen 270 -------GTSFLSASFDRFLKLWDTETGQV-LSRFH----------------LDKVPTCVKFHPDNQNIFLVGGSDKKIR 325 (503)
T ss_pred -------CCeeeeeecceeeeeeccccceE-EEEEe----------------cCCCceeeecCCCCCcEEEEecCCCcEE
Confidence 78999999999999999999875 34442 33446799999988 588999999999
Q ss_pred EEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036 446 LYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD 524 (634)
Q Consensus 446 LWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~ 524 (634)
.||.++++ .......|-.+|..|.|=++|++.++ |.|+++|+|+.. +|.|..+.+.|+.
T Consensus 326 ~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~-------------------~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 326 QWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR-------------------IPVPIKNIADPEM 385 (503)
T ss_pred EEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC-------------------CCccchhhcchhh
Confidence 99998874 77788889999999999999999998 889999999964 2455555544432
Q ss_pred ccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 525 SHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 525 ~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
-.. ..+...|. + .++++ |-|+++.|+...
T Consensus 386 hsm--P~~~~~P~--------~---~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 386 HTM--PCLTLHPN--------G---KWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred ccC--cceecCCC--------C---CeehhhccCceEEEEecc
Confidence 111 12333333 2 45555 778888888754
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.78 E-value=4.9e-19 Score=184.46 Aligned_cols=176 Identities=15% Similarity=0.225 Sum_probs=138.5
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI 398 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~ 398 (634)
.|+++..| +||++||..+-.+++.+.||++.| +++-.+ ...|+|||+|.||++||..++++
T Consensus 209 kiVSGlrD------nTikiWD~n~~~c~~~L~GHtGSV----LCLqyd--------~rviisGSSDsTvrvWDv~tge~- 269 (499)
T KOG0281|consen 209 KIVSGLRD------NTIKIWDKNSLECLKILTGHTGSV----LCLQYD--------ERVIVSGSSDSTVRVWDVNTGEP- 269 (499)
T ss_pred hhhccccc------CceEEeccccHHHHHhhhcCCCcE----Eeeecc--------ceEEEecCCCceEEEEeccCCch-
Confidence 35555554 799999999999999999999976 344444 46999999999999999999765
Q ss_pred EEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccc--cccccccCCCCCeEEEEECCCCC
Q 047036 399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSPITHVDVTYDGK 476 (634)
Q Consensus 399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~ItsVdfSpDGk 476 (634)
+.++.+|...|++ +.| .+|+++++|.|.+|++||....+ .+...|.||...|+.|+|+. +
T Consensus 270 l~tlihHceaVLh---------------lrf-~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k 331 (499)
T KOG0281|consen 270 LNTLIHHCEAVLH---------------LRF-SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K 331 (499)
T ss_pred hhHHhhhcceeEE---------------EEE-eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c
Confidence 6888888876642 222 37899999999999999987543 13346889999999999964 5
Q ss_pred EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-
Q 047036 477 WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA- 554 (634)
Q Consensus 477 ~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt- 554 (634)
||++ |.|.||++|++. +++++.++.||... +. -+.++ | +.||+
T Consensus 332 yIVsASgDRTikvW~~s----t~efvRtl~gHkRG---------------------IA--ClQYr-----~---rlvVSG 376 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTS----TCEFVRTLNGHKRG---------------------IA--CLQYR-----D---RLVVSG 376 (499)
T ss_pred eEEEecCCceEEEEecc----ceeeehhhhccccc---------------------ce--ehhcc-----C---eEEEec
Confidence 9999 999999999986 78888888888631 11 01222 3 67777
Q ss_pred EcCCeEEEEeCh
Q 047036 555 TVGKFSVIWDFQ 566 (634)
Q Consensus 555 Stg~~viiWdl~ 566 (634)
|+|..|.+||.+
T Consensus 377 SSDntIRlwdi~ 388 (499)
T KOG0281|consen 377 SSDNTIRLWDIE 388 (499)
T ss_pred CCCceEEEEecc
Confidence 789999999987
No 48
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.9e-17 Score=185.62 Aligned_cols=186 Identities=17% Similarity=0.302 Sum_probs=139.4
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR 395 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~ 395 (634)
..+.||+++.| +|||||++.+-+|+..|. |.+.| ++++|+|-- .++++|||-|+.||||++-..
T Consensus 379 Kn~fLLSSSMD------KTVRLWh~~~~~CL~~F~-HndfV--TcVaFnPvD-------DryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 379 KNNFLLSSSMD------KTVRLWHPGRKECLKVFS-HNDFV--TCVAFNPVD-------DRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred cCCeeEecccc------ccEEeecCCCcceeeEEe-cCCee--EEEEecccC-------CCcEeecccccceEEeecCcC
Confidence 34578888776 799999999999999996 88887 567999962 589999999999999998643
Q ss_pred CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc--cc-------CCCCC
Q 047036 396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA--FP-------GLGSP 465 (634)
Q Consensus 396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~--L~-------GH~d~ 465 (634)
+ |..|+.-+++ ++++|++|+| +.++|+.+|.+|+|+..+.+ ..+. +. .|. .
T Consensus 443 -~-----------Vv~W~Dl~~l-----ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~-r 503 (712)
T KOG0283|consen 443 -K-----------VVDWNDLRDL-----ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGK-R 503 (712)
T ss_pred -e-----------eEeehhhhhh-----heeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCc-e
Confidence 2 2346555543 6899999999 78999999999999987642 2221 11 234 8
Q ss_pred eEEEEECCCCC--EEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccc
Q 047036 466 ITHVDVTYDGK--WILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVT 543 (634)
Q Consensus 466 ItsVdfSpDGk--~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t 543 (634)
||++-|.|--. .||+|.|..|||+|.+ +-+++..|+|.-... +=+.|.|+.
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~---------------------SQ~~Asfs~-- 556 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTS---------------------SQISASFSS-- 556 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCC---------------------cceeeeEcc--
Confidence 99999986544 7888999999999975 345667787765311 123566653
Q ss_pred cCCCCceEEEE-EcCCeEEEEeChh
Q 047036 544 ENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 544 ~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
.| ++||+ |.|.+|+||+++.
T Consensus 557 -Dg---k~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 557 -DG---KHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -CC---CEEEEeecCceEEEEeCCC
Confidence 14 56655 7899999999853
No 49
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=9.9e-18 Score=186.18 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=184.8
Q ss_pred EEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 258 SLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 258 ~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
+.+|+..++..++.| .++.||....++... +..|.++ ..|.+....+...|+-.|+.++.| .+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~---~~~~~~~-----~g~i~~~i~y~e~~~~~l~~g~~D------~~ 82 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLE---THAFEGP-----KGFIANSICYAESDKGRLVVGGMD------TT 82 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCccccc---ceecccC-----cceeeccceeccccCcceEeeccc------ce
Confidence 456666677777754 478889876654322 1223332 334444333333555668888876 79
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ 414 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~ 414 (634)
|.+|-+.++..+.+|+||+..| |.++...+ ..++|||.|.|+++|-+- .++..+.||..+|
T Consensus 83 i~v~~~~~~~P~~~LkgH~snV--C~ls~~~~---------~~~iSgSWD~TakvW~~~---~l~~~l~gH~asV----- 143 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNV--CSLSIGED---------GTLISGSWDSTAKVWRIG---ELVYSLQGHTASV----- 143 (745)
T ss_pred EEEEecCCCCchhhhhccccce--eeeecCCc---------CceEecccccceEEecch---hhhcccCCcchhe-----
Confidence 9999999999999999999864 54444433 348999999999999873 3456788887664
Q ss_pred ccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccc
Q 047036 415 GHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFS 494 (634)
Q Consensus 415 g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~ 494 (634)
.++++-|.+.+++||.|.+||||.. + ....+|.||.+.|++|++=+++.+|-++.|+.||+|+.
T Consensus 144 ----------WAv~~l~e~~~vTgsaDKtIklWk~--~-~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~--- 207 (745)
T KOG0301|consen 144 ----------WAVASLPENTYVTGSADKTIKLWKG--G-TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL--- 207 (745)
T ss_pred ----------eeeeecCCCcEEeccCcceeeeccC--C-chhhhhccchhheeeeEEecCCCeEeecCCceEEEEec---
Confidence 4677777789999999999999995 3 36788999999999999999988876699999999995
Q ss_pred cCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccc
Q 047036 495 DKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAH 573 (634)
Q Consensus 495 ~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~ 573 (634)
+|+++..+.||.. +. ..+.-... + ..||+ +.|+.+.||+-....+
T Consensus 208 --~ge~l~~~~ghtn----------------~v--Ysis~~~~--------~---~~Ivs~gEDrtlriW~~~e~~q--- 253 (745)
T KOG0301|consen 208 --DGEVLLEMHGHTN----------------FV--YSISMALS--------D---GLIVSTGEDRTLRIWKKDECVQ--- 253 (745)
T ss_pred --cCceeeeeeccce----------------EE--EEEEecCC--------C---CeEEEecCCceEEEeecCceEE---
Confidence 6999999998874 11 11220101 1 35655 7899999999762221
Q ss_pred cccccccCCcceeeEEEeccCCCeeeeccc-cCccccCCCCCCCEEEEcCCcee
Q 047036 574 ECYRNQQGLKSCYCYKIVLKDESIVESRFM-HDKFAVTDSPEAPLVVATPMKVS 626 (634)
Q Consensus 574 ~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~-~d~f~~~~~~~~~iivA~~~~v~ 626 (634)
.|....-+|=++.++ ...-..|+| |.-|-|=|..+..
T Consensus 254 ---------------~I~lPttsiWsa~~L~NgDIvvg~S-DG~VrVfT~~k~R 291 (745)
T KOG0301|consen 254 ---------------VITLPTTSIWSAKVLLNGDIVVGGS-DGRVRVFTVDKDR 291 (745)
T ss_pred ---------------EEecCccceEEEEEeeCCCEEEecc-CceEEEEEecccc
Confidence 222223344444443 222334664 6777776655443
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=2.9e-17 Score=174.27 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=187.4
Q ss_pred CCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+.+--+-| +++.|++++ .+..+|....++. ++ ...++-+| ..|+.-+++++|.+.|++++.++
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~k-l~~tlvgh-------~~~V~yi~wSPDdryLlaCg~~e--- 291 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-FK-LKKTLVGH-------SQPVSYIMWSPDDRYLLACGFDE--- 291 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-ee-eeeeeecc-------cCceEEEEECCCCCeEEecCchH---
Confidence 344555666 677777765 4677788766652 22 22344455 35677778888889999998864
Q ss_pred CCCcEEEEeCCCCcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
.+++||+.||.+++.+. +|...| ..+++.|| |..+++||.|++|..||+... +....
T Consensus 292 ---~~~lwDv~tgd~~~~y~~~~~~S~--~sc~W~pD--------g~~~V~Gs~dr~i~~wdlDgn--~~~~W------- 349 (519)
T KOG0293|consen 292 ---VLSLWDVDTGDLRHLYPSGLGFSV--SSCAWCPD--------GFRFVTGSPDRTIIMWDLDGN--ILGNW------- 349 (519)
T ss_pred ---heeeccCCcchhhhhcccCcCCCc--ceeEEccC--------CceeEecCCCCcEEEecCCcc--hhhcc-------
Confidence 69999999999998884 445665 45699999 568999999999999998742 22221
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
+++....+.++|.++|| ++++-..|..||||++.+. .. ..+-....+|+++++|.||++++. -.+..|+
T Consensus 350 -------~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~-~d-r~lise~~~its~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 350 -------EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR-VD-RGLISEEQPITSFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred -------cccccceeEEEEEcCCCcEEEEEecccceeeechhhh-hh-hccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence 23344568899999999 7877789999999998762 22 224445679999999999999998 7899999
Q ss_pred EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
|||+. +.+.++.|.||.-. .-..+.+|- |.++..|++ |.|.-|+||+..
T Consensus 421 LWDl~----e~~lv~kY~Ghkq~---------------------~fiIrSCFg-----g~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 421 LWDLE----ENKLVRKYFGHKQG---------------------HFIIRSCFG-----GGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred Eeecc----hhhHHHHhhccccc---------------------ceEEEeccC-----CCCcceEEecCCCceEEEEEcc
Confidence 99986 67777888888621 122466773 455677877 679999999987
Q ss_pred hhhcccccccccccCCcceeeEEEeccCCCeeeecc
Q 047036 567 QVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRF 602 (634)
Q Consensus 567 ~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f 602 (634)
+|++- -.+.+|...|+.+..
T Consensus 471 ---sgkll-------------~~LsGHs~~vNcVsw 490 (519)
T KOG0293|consen 471 ---SGKLL-------------AVLSGHSKTVNCVSW 490 (519)
T ss_pred ---CCcee-------------EeecCCcceeeEEec
Confidence 34443 256666666666655
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=166.40 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=153.8
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN 385 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~ 385 (634)
-|..+.-++.|++..|++++| +|||||++.+|-+|+++.||...|. -+ +.+.| +..+++|+.|+
T Consensus 18 gaV~avryN~dGnY~ltcGsd------rtvrLWNp~rg~liktYsghG~EVl-D~-~~s~D--------nskf~s~GgDk 81 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD------RTVRLWNPLRGALIKTYSGHGHEVL-DA-ALSSD--------NSKFASCGGDK 81 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC------ceEEeecccccceeeeecCCCceee-ec-ccccc--------ccccccCCCCc
Confidence 466777789999999999987 7999999999999999999998762 32 55655 57899999999
Q ss_pred eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCC
Q 047036 386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLG 463 (634)
Q Consensus 386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~ 463 (634)
.|.+||+.+++ +++.+.||.. ++.++.|+.+. -|+|||.|.+||+||.++.+ .+.+.|....
T Consensus 82 ~v~vwDV~TGk-v~Rr~rgH~a---------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGK-VDRRFRGHLA---------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCe-eeeecccccc---------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999975 5678887764 35788999887 68999999999999987632 3556777788
Q ss_pred CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036 464 SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV 542 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~ 542 (634)
+.|.+|+++ +.-|++ |.|+++|.+|++ +|+....|-||-- ..++|+++
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR----~G~l~sDy~g~pi--------------------t~vs~s~d----- 194 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIR----KGTLSSDYFGHPI--------------------TSVSFSKD----- 194 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEee----cceeehhhcCCcc--------------------eeEEecCC-----
Confidence 999999997 456777 999999999998 5665544444421 24667766
Q ss_pred ccCCCCceEEEEEcCCeEEEEeCh
Q 047036 543 TENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 543 t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
| .-.++++-|..+.+-|-+
T Consensus 195 ---~--nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 195 ---G--NCSLASSLDSTLRLLDKE 213 (307)
T ss_pred ---C--CEEEEeeccceeeecccc
Confidence 3 356778889999998865
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=4.6e-17 Score=182.05 Aligned_cols=276 Identities=15% Similarity=0.225 Sum_probs=191.0
Q ss_pred EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
+++++. .|+..+++| ..|.+|...... .+.++... .+.++.|-|-. +.|+.+..+ +.
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~k-----ciRTi~~~-y~l~~~Fvpgd--------~~Iv~G~k~------Ge 435 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDTLK-----CIRTITCG-YILASKFVPGD--------RYIVLGTKN------GE 435 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccCcc-----eeEEeccc-cEEEEEecCCC--------ceEEEeccC------Cc
Confidence 666666 567777766 788888865432 23333221 22445555443 345666543 78
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ 414 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~ 414 (634)
|-++|+..+.++.+.+.|.+.+ +.++.+|| +.-+++||.|+||++||... +....|....++...+
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaI--Wsi~~~pD--------~~g~vT~saDktVkfWdf~l----~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAI--WSISLSPD--------NKGFVTGSADKTVKFWDFKL----VVSVPGTQKKVLSLKH 501 (888)
T ss_pred eEEEEeehhhhhhhhhccccce--eeeeecCC--------CCceEEecCCcEEEEEeEEE----EeccCcccceeeeecc
Confidence 9999999999999999999974 67799999 45699999999999999752 1111111111111111
Q ss_pred ccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 415 GHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 415 g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.........+.|+.+|||| +||+|=.|+|+++|=+.+++ ..-.|-||.-||+|+++|||++.|++ |.|+.|++|-+.
T Consensus 502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 1223345678999999999 89999999999999998874 66788999999999999999999999 999999999887
Q ss_pred cccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc
Q 047036 493 FSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA 572 (634)
Q Consensus 493 ~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~ 572 (634)
+ |.|-..|-+|-... ..+.|.|... ..-.++.|+.|.-||-++..
T Consensus 581 F----GDCHKS~fAHdDSv------------------m~V~F~P~~~----------~FFt~gKD~kvKqWDg~kFe--- 625 (888)
T KOG0306|consen 581 F----GDCHKSFFAHDDSV------------------MSVQFLPKTH----------LFFTCGKDGKVKQWDGEKFE--- 625 (888)
T ss_pred c----chhhhhhhcccCce------------------eEEEEcccce----------eEEEecCcceEEeechhhhh---
Confidence 6 55666677775421 2467776511 23445779999999865432
Q ss_pred ccccccccCCcceeeEEEeccCCCeeeeccccCc--cccCCCCCCCE
Q 047036 573 HECYRNQQGLKSCYCYKIVLKDESIVESRFMHDK--FAVTDSPEAPL 617 (634)
Q Consensus 573 ~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~--f~~~~~~~~~i 617 (634)
+.| ++.+|...|-+... .++ |.++++.|+.|
T Consensus 626 --~iq-----------~L~~H~~ev~cLav-~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 626 --EIQ-----------KLDGHHSEVWCLAV-SPNGSFVVSSSHDKSI 658 (888)
T ss_pred --hhe-----------eeccchheeeeeEE-cCCCCeEEeccCCcee
Confidence 221 45666666665554 444 66676655554
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=1.2e-17 Score=186.53 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=127.7
Q ss_pred CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
+++++++|. .++|.+++.| +|.++|+++.++++.+|.||+.+| ..|.|+|. .+.++
T Consensus 466 IN~Vaia~n--------dkLiAT~SqD------ktaKiW~le~~~l~~vLsGH~RGv--w~V~Fs~~--------dq~la 521 (775)
T KOG0319|consen 466 INCVAIAPN--------DKLIATGSQD------KTAKIWDLEQLRLLGVLSGHTRGV--WCVSFSKN--------DQLLA 521 (775)
T ss_pred ccceEecCC--------CceEEecccc------cceeeecccCceEEEEeeCCccce--EEEEeccc--------cceeE
Confidence 355555554 4556667765 799999999999999999999997 56799997 57999
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
|+|.|+|||||-+.+..| ++++.||...|+ .+...+.+.+|+||+.||.||||++.+. .|..+|
T Consensus 522 T~SgD~TvKIW~is~fSC-lkT~eGH~~aVl--------------ra~F~~~~~qliS~~adGliKlWnikt~-eC~~tl 585 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSC-LKTFEGHTSAVL--------------RASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTL 585 (775)
T ss_pred eccCCceEEEEEecccee-eeeecCccceeE--------------eeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhh
Confidence 999999999999998766 699999987662 3333344448999999999999999986 589999
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
.+|.+.|++++.+|++..+++ +.|+.|.+|
T Consensus 586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999999999999999 999999999
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.7e-17 Score=180.99 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=125.9
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
+..+..|... .+|++++| .+|++||-+.+ .+.++|+||+..| +.| +|.|.- .+.+|
T Consensus 101 R~iavHPt~P--------~vLtsSDD------m~iKlW~we~~wa~~qtfeGH~HyV-Mqv-~fnPkD-------~ntFa 157 (794)
T KOG0276|consen 101 RSIAVHPTLP--------YVLTSSDD------MTIKLWDWENEWACEQTFEGHEHYV-MQV-AFNPKD-------PNTFA 157 (794)
T ss_pred eeeeecCCCC--------eEEecCCc------cEEEEeeccCceeeeeEEcCcceEE-EEE-EecCCC-------cccee
Confidence 3444556554 35566654 79999998865 6889999999988 354 999961 47999
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC---eEEEEECCCcEEEEecccccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG---SIVVGSLDGKIRLYSKTSMRQAK 456 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG---~IASGS~DGtIRLWD~~t~r~ak 456 (634)
|||-|+||++|.+-+..+ .-+|.||...| .|+.+-+.| +|+||+.|.+||+||-++. +|.
T Consensus 158 S~sLDrTVKVWslgs~~~-nfTl~gHekGV---------------N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV 220 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHP-NFTLEGHEKGV---------------NCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCV 220 (794)
T ss_pred eeeccccEEEEEcCCCCC-ceeeeccccCc---------------ceEEeccCCCcceEEecCCCceEEEeecchH-HHH
Confidence 999999999999987654 56888877654 577776666 9999999999999999985 699
Q ss_pred ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
++|.||..-|..+.|.|.=-+|+| |.|+|+|||...
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCc
Confidence 999999999999999999999999 999999999865
No 55
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.5e-17 Score=171.86 Aligned_cols=232 Identities=14% Similarity=0.209 Sum_probs=156.9
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEE--ecccCCC---
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQ--NMVKGDS--- 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq--~l~gh~s--- 407 (634)
.|.++|.+++|+|+.++.||.+.|+ .+.|+|. +.++++||.|++..||-....-.+-+ .-.+|++
T Consensus 170 hTA~iWs~Esg~CL~~Y~GH~GSVN--sikfh~s--------~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 170 HTARIWSLESGACLATYTGHTGSVN--SIKFHNS--------GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred cceeEEeeccccceeeeccccccee--eEEeccc--------cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 6999999999999999999999986 4599997 68999999999999998332100000 0001111
Q ss_pred --------Cccc---cccccccc--------cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036 408 --------PVLH---WTQGHQFS--------RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT 467 (634)
Q Consensus 408 --------~V~~---~~~g~~y~--------~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It 467 (634)
+-++ -+.+|... +...+.|.-.-.+| ++++||.|.+.-|||+.++ .....|.||....+
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELt 318 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-EVVNILTGHDSELT 318 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-ceeccccCcchhcc
Confidence 0000 00111110 11123333333455 8999999999999999998 48889999999999
Q ss_pred EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCC
Q 047036 468 HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENG 546 (634)
Q Consensus 468 sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g 546 (634)
+++-.|..+.+++ |.|++.||||.+ ..-..+..|.||.. .-+..-|+. +
T Consensus 319 HcstHptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtd-----------------------tVTS~vF~~----d 368 (481)
T KOG0300|consen 319 HCSTHPTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTD-----------------------TVTSVVFNT----D 368 (481)
T ss_pred ccccCCcceEEEEeccCceeEeccch---hhcceeeeeccccc-----------------------ceeEEEEec----C
Confidence 9999999999998 999999999976 24445667777764 224455652 1
Q ss_pred CCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCc-
Q 047036 547 KQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMK- 624 (634)
Q Consensus 547 ~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~- 624 (634)
..||+ |.|+.|.||||+....- ..--+-+..|+-+.+ +. ..-|+|+|+|
T Consensus 369 ---d~vVSgSDDrTvKvWdLrNMRsp----------------lATIRtdS~~NRvav-------s~---g~~iIAiPhDN 419 (481)
T KOG0300|consen 369 ---DRVVSGSDDRTVKVWDLRNMRSP----------------LATIRTDSPANRVAV-------SK---GHPIIAIPHDN 419 (481)
T ss_pred ---CceeecCCCceEEEeeeccccCc----------------ceeeecCCccceeEe-------ec---CCceEEeccCC
Confidence 24555 67899999999854421 122344566654333 32 2448899997
Q ss_pred --eeeeeccCCC
Q 047036 625 --VSSISLSGRR 634 (634)
Q Consensus 625 --v~~~~~~~~~ 634 (634)
|..+.++|.|
T Consensus 420 RqvRlfDlnG~R 431 (481)
T KOG0300|consen 420 RQVRLFDLNGNR 431 (481)
T ss_pred ceEEEEecCCCc
Confidence 5666666644
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.76 E-value=1.1e-16 Score=168.48 Aligned_cols=222 Identities=14% Similarity=0.186 Sum_probs=159.5
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCcEEE----EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGKIVT----EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK~V~----~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
++++++.| .||++|-.+-|..+- .-+||...|. + ++..++ |..++|||.|++|++|+...
T Consensus 161 ~fvsas~D------qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~-s-Vsv~~s--------gtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 161 LFVSASMD------QTLRLWKWNVGENKVKALKVCRGHKRSVD-S-VSVDSS--------GTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred eEEEecCC------ceEEEEEecCchhhhhHHhHhccccccee-E-EEecCC--------CCeEEeecccceeeecccCC
Confidence 56666665 699999988886543 3459999885 4 477777 78999999999999999221
Q ss_pred C------------------------CceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecc
Q 047036 395 R------------------------SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 395 ~------------------------~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~ 450 (634)
. +.++.+|.||.. ++++|.+++.+.+.|+|.|-+||.||+.
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~---------------~Vs~V~w~d~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE---------------PVSSVVWSDATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEeccccc---------------ceeeEEEcCCCceEeecccceEEEEEee
Confidence 0 112334444444 4578889988899999999999999999
Q ss_pred ccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCe-eeeecCCCCCCCCCceeEeecCCCcccc
Q 047036 451 SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKT-KTGFSGRMGNKIPAPRLLKLTPLDSHLA 528 (634)
Q Consensus 451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~-~~gF~gh~~~~~p~pr~L~L~Pe~~~~~ 528 (634)
+++ .+.++.+ .-++++|+.+|.-+.||+ +.|.-|||||.+.+ .|.. .+.|.||.+
T Consensus 290 tg~-~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~--~gs~v~~s~~gH~n------------------- 346 (423)
T KOG0313|consen 290 TGG-LKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG--DGSVVSQSLIGHKN------------------- 346 (423)
T ss_pred ccc-ceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCC--CCceeEEeeecchh-------------------
Confidence 985 7777764 568999999999999999 99999999998743 3333 245666653
Q ss_pred CCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 529 GTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 529 g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
--+...|++ + ++..+++ |.|+.+.+||+..-+. + -|.|-+|++.|-++..-....
T Consensus 347 ----wVssvkwsp-~----~~~~~~S~S~D~t~klWDvRS~k~----p-----------lydI~~h~DKvl~vdW~~~~~ 402 (423)
T KOG0313|consen 347 ----WVSSVKWSP-T----NEFQLVSGSYDNTVKLWDVRSTKA----P-----------LYDIAGHNDKVLSVDWNEGGL 402 (423)
T ss_pred ----hhhheecCC-C----CceEEEEEecCCeEEEEEeccCCC----c-----------ceeeccCCceEEEEeccCCce
Confidence 112344543 1 2445555 8899999999985442 1 489999999999988844445
Q ss_pred ccCCCCCCCEE
Q 047036 608 AVTDSPEAPLV 618 (634)
Q Consensus 608 ~~~~~~~~~ii 618 (634)
.++..-|++|-
T Consensus 403 IvSGGaD~~l~ 413 (423)
T KOG0313|consen 403 IVSGGADNKLR 413 (423)
T ss_pred EEeccCcceEE
Confidence 44443455553
No 57
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.75 E-value=1e-16 Score=161.74 Aligned_cols=207 Identities=11% Similarity=0.188 Sum_probs=154.3
Q ss_pred CCcEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+|+.|||| -|+.++..|+ .++||....-. ....|.. -+|...++..+...-|+++-.
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~~~--------~spVn~vvlhpnQteLis~dq----- 144 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQRNYQH--------NSPVNTVVLHPNQTELISGDQ----- 144 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcc-----cchhccC--------CCCcceEEecCCcceEEeecC-----
Confidence 468999999 8999999986 56666654321 2222321 156665555555555666543
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-----eEEecccC
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-----IVQNMVKG 405 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-----~Vq~l~gh 405 (634)
++.|++||+..-.+-+++--..+ +.|..+.+.|| |..++.+-.-|++.+|++-.... ++..+..|
T Consensus 145 -sg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~d--------gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 145 -SGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPD--------GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred -CCcEEEEEccCCccccccCCCCC-cceeeEEEcCC--------CcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 37899999998888888765544 45677788998 67899999999999999875421 12223222
Q ss_pred CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD 483 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D 483 (634)
+. -+..+-+|||+ +||++|.|.++++|+..++-+....|.||..+++..+||.||+||++ +.|
T Consensus 215 ~~---------------~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 215 NG---------------HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred cc---------------eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 21 23344578888 89999999999999998862244678899999999999999999999 999
Q ss_pred CcEEEEEcccccCCCCeeeeecCCC
Q 047036 484 TYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
+++||||+. .|+.+..+.||.
T Consensus 280 ~~~rlW~~~----~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 280 HTARLWDLS----AGKEVRQYQGHH 300 (311)
T ss_pred Cceeecccc----cCceeeecCCcc
Confidence 999999986 688888899887
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.75 E-value=6e-18 Score=179.42 Aligned_cols=241 Identities=14% Similarity=0.189 Sum_probs=159.8
Q ss_pred cEEEeee-CCCeEEEe-c--CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVS-D--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~-G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
.+-.|-+ +++..+.+ | ..|.+|+...++.+. +..|+| + .-|-..|-|+.++..+|+++.|
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~---~~tLaG------s-~g~it~~d~d~~~~~~iAas~d------ 240 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL---ISTLAG------S-LGNITSIDFDSDNKHVIAASND------ 240 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhcccchhhh---hhhhhc------c-CCCcceeeecCCCceEEeecCC------
Confidence 3444555 33233333 3 577788765544222 122332 1 1234456667777777877765
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+++++|++..++...+|.||++.| +.+.|... ...+++|+.|.+||+||++...|. +++- .
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkV--t~ak~~~~--------~~~vVsgs~DRtiK~WDl~k~~C~-kt~l-------~- 301 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKV--TAAKFKLS--------HSRVVSGSADRTIKLWDLQKAYCS-KTVL-------P- 301 (459)
T ss_pred Cceeeeeccchhhhhhhcccccce--eeehhhcc--------ccceeeccccchhhhhhhhhhhee-cccc-------c-
Confidence 689999999999999999999987 44465543 234999999999999999976553 3321 0
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
+ +..+.+ +.+ .-.++||..|++||+||.++.. +....|+|+ .|++|++|++|.-|++ +.|.+|.++|+
T Consensus 302 --~---S~cnDI---~~~-~~~~~SgH~DkkvRfwD~Rs~~-~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 302 --G---SQCNDI---VCS-ISDVISGHFDKKVRFWDIRSAD-KTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred --c---ccccce---Eec-ceeeeecccccceEEEeccCCc-eeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeec
Confidence 0 112222 222 2368999999999999987753 666778776 9999999999999999 99999999998
Q ss_pred ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036 492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS 571 (634)
Q Consensus 492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~ 571 (634)
+. .+-...|.. +.. . -.-..++..|||. + +..+++|.++-|+||++. .|
T Consensus 371 Rt----~eI~~~~sA----------------~g~-k--~asDwtrvvfSpd---~--~YvaAGS~dgsv~iW~v~---tg 419 (459)
T KOG0288|consen 371 RT----KEIRQTFSA----------------EGF-K--CASDWTRVVFSPD---G--SYVAAGSADGSVYIWSVF---TG 419 (459)
T ss_pred cc----ccEEEEeec----------------ccc-c--cccccceeEECCC---C--ceeeeccCCCcEEEEEcc---Cc
Confidence 62 222222321 111 1 1234678888862 2 344455899999999986 45
Q ss_pred ccc
Q 047036 572 AHE 574 (634)
Q Consensus 572 ~~~ 574 (634)
+++
T Consensus 420 KlE 422 (459)
T KOG0288|consen 420 KLE 422 (459)
T ss_pred eEE
Confidence 554
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.75 E-value=6.2e-17 Score=167.12 Aligned_cols=253 Identities=16% Similarity=0.193 Sum_probs=173.1
Q ss_pred CCcEEEeee-CCCeEEEecC---eeeEEEcc------------CCc-eecceeEEEecCC-CCCcccccCcceeeEEeCC
Q 047036 255 GVQSLTLGA-LDNSFLVSDL---GLQVYRNY------------NRG-IHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGE 316 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G~---~igV~k~~------------~~g-l~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D 316 (634)
+.-+.|.+| +|+++++.|+ .|.++... .++ -..+-+|.+|+.| ..++-..|.|...
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~------ 185 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET------ 185 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh------
Confidence 445788888 8999999985 67777643 111 2233467777777 2345556666553
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
.|++++.| +||+++|...--..+-|+.-.+.-++..++|+|. |+.|+.|.+..+++++|+.+-+
T Consensus 186 --ILiS~srD------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--------GefllvgTdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 186 --ILISGSRD------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--------GEFLLVGTDHPTLRLYDVNTYQ 249 (430)
T ss_pred --eEEeccCC------CeEEEEecccHHHHHHHHHhhccceeeeEeecCC--------CceEEEecCCCceeEEecccee
Confidence 34455443 7999999865444444443332222345699998 7999999999999999999876
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEecccccccccccc-CCC-CCeEEEEECC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSMRQAKTAFP-GLG-SPITHVDVTY 473 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~r~akt~L~-GH~-d~ItsVdfSp 473 (634)
|.+.... . ++ +.-.+++|-.++.|. -++||.||.|||||..+.| +.+++. +|+ ..|.+.-|+.
T Consensus 250 cfvsanP--------d-~q----ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 250 CFVSANP--------D-DQ----HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred EeeecCc--------c-cc----cccceeEEEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEcc
Confidence 6432221 0 11 223468888899994 5899999999999988875 777765 676 4699999999
Q ss_pred CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE
Q 047036 474 DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL 552 (634)
Q Consensus 474 DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I 552 (634)
||+|||| ++|.+++||.+. +|+++..|+|.-... ...-=+.|-||+ |+ +..|
T Consensus 316 n~kyiLsSG~DS~vkLWEi~----t~R~l~~YtGAg~tg------------------rq~~rtqAvFNh-tE----dyVl 368 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEIS----TGRMLKEYTGAGTTG------------------RQKHRTQAVFNH-TE----DYVL 368 (430)
T ss_pred CCeEEeecCCcceeeeeeec----CCceEEEEecCCccc------------------chhhhhhhhhcC-cc----ceEE
Confidence 9999999 999999999984 899999998763211 111124577876 43 2333
Q ss_pred EE-EcCCeEEEEeChhhhc
Q 047036 553 VA-TVGKFSVIWDFQQVKN 570 (634)
Q Consensus 553 vt-Stg~~viiWdl~~v~~ 570 (634)
.- -.-.-++.||-..--+
T Consensus 369 ~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADR 387 (430)
T ss_pred ccccccCceeeccccchhh
Confidence 33 3345689999874433
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.75 E-value=4.7e-17 Score=171.33 Aligned_cols=151 Identities=19% Similarity=0.299 Sum_probs=120.0
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
|+..+++.+ ...+++++-| .||+.||+++|+++.++.+... +..++.+|. ..+|++||.|.-
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwD------HTIk~WDletg~~~~~~~~~ks---l~~i~~~~~--------~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWD------HTIKVWDLETGGLKSTLTTNKS---LNCISYSPL--------SKLLASGSSDRH 323 (423)
T ss_pred ceeeEEEcC-CCceEeeccc------ceEEEEEeecccceeeeecCcc---eeEeecccc--------cceeeecCCCCc
Confidence 444444444 4456677765 7999999999999999999875 344577776 579999999999
Q ss_pred EEEEEcCCCCc--eEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCC
Q 047036 387 LCQWDMRDRSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGL 462 (634)
Q Consensus 387 IklWD~R~~~~--~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH 462 (634)
|++||||++.. +.++|.||..+| +++..+|-. +|+|||.||++||||+++-+.....|.+|
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwV---------------ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWV---------------SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhh---------------hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 99999998742 457777777654 556667655 69999999999999988754466788999
Q ss_pred CCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 463 GSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
.+.|.+++++ +|..|++ +.|++|++...
T Consensus 389 ~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 389 NDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred CceEEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999997 5678888 99999999863
No 61
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.7e-17 Score=185.27 Aligned_cols=216 Identities=11% Similarity=0.159 Sum_probs=157.5
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCC----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETG----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR 393 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTG----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R 393 (634)
-+|++++.| +++++|-++.+ -++....||++.| ..++++-- + ...++|+|.|+||++|+++
T Consensus 378 ~llat~sKD------~svilWr~~~~~~~~~~~a~~~gH~~sv--gava~~~~--~-----asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 378 DLLATGSKD------KSVILWRLNNNCSKSLCVAQANGHTNSV--GAVAGSKL--G-----ASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred cEEEEecCC------ceEEEEEecCCcchhhhhhhhccccccc--ceeeeccc--C-----ccEEEEecCCceEEEecCC
Confidence 356666654 79999976433 3567789999986 45577432 1 3689999999999999998
Q ss_pred CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036 394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT 472 (634)
Q Consensus 394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS 472 (634)
..... . .++..-.+...-.+...+.||+.+|+. .||+||.|.+.+||++...+ ...+|.||.-.|++|.||
T Consensus 443 ~s~~~-~------~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 443 KSKET-A------FPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-LLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred Ccccc-c------ccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce-EEEEeeCCccceEEEEec
Confidence 52210 0 011000111222456678999999987 79999999999999998764 778999999999999999
Q ss_pred CCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036 473 YDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH 551 (634)
Q Consensus 473 pDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~ 551 (634)
|.-+.||+ |.|+||+||.+. ++.|+.+|.||.... .++.|-. ++++.
T Consensus 515 ~~dq~laT~SgD~TvKIW~is----~fSClkT~eGH~~aV-----------------------lra~F~~-----~~~ql 562 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSIS----TFSCLKTFEGHTSAV-----------------------LRASFIR-----NGKQL 562 (775)
T ss_pred cccceeEeccCCceEEEEEec----cceeeeeecCcccee-----------------------Eeeeeee-----CCcEE
Confidence 99999999 999999999985 799999999998522 2344432 23677
Q ss_pred EEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc
Q 047036 552 LVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH 604 (634)
Q Consensus 552 IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~ 604 (634)
|.+++++.+.+||+++ .+|- -.|-.|++.|=+...++
T Consensus 563 iS~~adGliKlWnikt-----~eC~-----------~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKT-----NECE-----------MTLDAHNDRVWALSVSP 599 (775)
T ss_pred EeccCCCcEEEEeccc-----hhhh-----------hhhhhccceeEEEeecC
Confidence 7778999999999873 2232 25667777666555444
No 62
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=3.4e-17 Score=183.62 Aligned_cols=201 Identities=12% Similarity=0.196 Sum_probs=147.1
Q ss_pred cEEEeeeCCCeEEEec-CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036 257 QSLTLGALDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 257 ~~LavG~~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI 335 (634)
+.+++.=.-+.+++.| +..+||.....+-..+ ..+.+.+ +-.+.++...+-+.+-+.++|++++.+ +.|
T Consensus 43 nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~-~~~~~k~---kqn~~~S~~DVkW~~~~~NlIAT~s~n------G~i 112 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGRSLLKLYAINPNDFSEK-CNHRFKT---KQNKFYSAADVKWGQLYSNLIATCSTN------GVI 112 (839)
T ss_pred ceEeecCCcceeEEecccceeeEeeCcccCCcc-eeeeccc---ccceeeehhhcccccchhhhheeecCC------CcE
Confidence 3333332344677777 5778888766541111 1222221 123444555566667788899998876 689
Q ss_pred EEEeCCC---CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 336 QQLDIET---GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 336 rlWDleT---GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
-+|||.. .+.+..|.-|+..|+ .++|++. + ..+|+|||.|++||+||+|.... ++++.+.+..
T Consensus 113 ~vWdlnk~~rnk~l~~f~EH~Rs~~--~ldfh~t------e-p~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSES---- 178 (839)
T KOG0269|consen 113 SVWDLNKSIRNKLLTVFNEHERSAN--KLDFHST------E-PNILISGSQDGTVKCWDLRSKKS-KSTFRSNSES---- 178 (839)
T ss_pred EEEecCccccchhhhHhhhhcccee--eeeeccC------C-ccEEEecCCCceEEEEeeecccc-cccccccchh----
Confidence 9999987 677788999999874 5688875 2 47999999999999999998654 3555443322
Q ss_pred ccccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
+.-|.|+|. + ++|++...|.++|||++..+++...|.+|.+||.+++++|++.|||+ +.|++|+||
T Consensus 179 -----------iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 179 -----------IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred -----------hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 344566654 3 79999999999999987655666789999999999999999999999 999999999
Q ss_pred Ecc
Q 047036 490 CTL 492 (634)
Q Consensus 490 D~~ 492 (634)
|..
T Consensus 248 d~t 250 (839)
T KOG0269|consen 248 DMT 250 (839)
T ss_pred ecc
Confidence 964
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.9e-16 Score=153.68 Aligned_cols=249 Identities=14% Similarity=0.136 Sum_probs=168.2
Q ss_pred CCcEEEeee-CCCeEEEecC---eeeEEEc--cCCceecceeEEEecCCC-CCcccccCcceeeEEeCC--cceEEecCC
Q 047036 255 GVQSLTLGA-LDNSFLVSDL---GLQVYRN--YNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGE--TNMMLMSPL 325 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G~---~igV~k~--~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D--~~mllsss~ 325 (634)
.+....+++ +++..++.|+ .|.|..- ...+..++ -++|.-|. .++-.+| |-..+ +.+|++++.
T Consensus 89 kgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~--dle~nmhdgtirdl~f------ld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGH--DLEFNMHDGTIRDLAF------LDDPESGGAILASAGA 160 (350)
T ss_pred CccEEEEEecCccCeEEecCCCceEEEEecccccccccCc--ceeeeecCCceeeeEE------ecCCCcCceEEEecCC
Confidence 566788888 8999999884 5666543 33333333 33444331 1122222 22222 224444444
Q ss_pred CCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036 326 KDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG 405 (634)
Q Consensus 326 d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh 405 (634)
. |-.||+-|-.+|+-.+.+.||++-+ +.+.+|+ +-.+++||.|+|||+||+|...| |.++..
T Consensus 161 g-----dc~iy~tdc~~g~~~~a~sghtghi-lalyswn----------~~m~~sgsqdktirfwdlrv~~~-v~~l~~- 222 (350)
T KOG0641|consen 161 G-----DCKIYITDCGRGQGFHALSGHTGHI-LALYSWN----------GAMFASGSQDKTIRFWDLRVNSC-VNTLDN- 222 (350)
T ss_pred C-----cceEEEeecCCCCcceeecCCcccE-EEEEEec----------CcEEEccCCCceEEEEeeeccce-eeeccC-
Confidence 3 3789999999999999999999976 3555665 46899999999999999998654 566631
Q ss_pred CCCcccccccccc-ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 406 DSPVLHWTQGHQF-SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 406 ~s~V~~~~~g~~y-~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
..|.- .....+.++|..|.| .||+|-.|....|||++++| ..+.+..|+..|++|.|||-..||++ |.
T Consensus 223 --------~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 223 --------DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred --------cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecc
Confidence 01110 123457889999999 68999999999999999986 78888899999999999999999999 99
Q ss_pred CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEE
Q 047036 483 DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVI 562 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vii 562 (634)
|..|+|-|++ |.+.. .-|..+ -.||--.. ....+.|.-| ..|.+|.|+.+.+
T Consensus 294 d~~ikltdlq-----gdla~----------el~~~v--v~ehkdk~-i~~rwh~~d~----------sfisssadkt~tl 345 (350)
T KOG0641|consen 294 DMKIKLTDLQ-----GDLAH----------ELPIMV--VAEHKDKA-IQCRWHPQDF----------SFISSSADKTATL 345 (350)
T ss_pred cceEEEeecc-----cchhh----------cCceEE--EEeccCce-EEEEecCccc----------eeeeccCcceEEE
Confidence 9999999964 33211 111111 12221100 1233444444 3777899999999
Q ss_pred EeCh
Q 047036 563 WDFQ 566 (634)
Q Consensus 563 Wdl~ 566 (634)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9763
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=5.1e-17 Score=164.31 Aligned_cols=183 Identities=13% Similarity=0.174 Sum_probs=136.6
Q ss_pred cEEEeeeCCCeEEEec-----CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 257 QSLTLGALDNSFLVSD-----LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 257 ~~LavG~~D~sfvv~G-----~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
++++++..|+|.-+.+ .-|.+||-+... +. ++.+.++. +..+++++-|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E------V~---------Svdwn~~~-------r~~~ltsSWD----- 126 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE------VY---------SVDWNTVR-------RRIFLTSSWD----- 126 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhh------eE---------Eecccccc-------ceeEEeeccC-----
Confidence 5777777899887765 344555543321 11 22233332 2345566665
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
+||+|||...++-|++|+||...| .-..|+|-- +++++++|.|+++++||+|..++. +.+..|+.
T Consensus 127 -~TiKLW~~~r~~Sv~Tf~gh~~~I--y~a~~sp~~-------~nlfas~Sgd~~l~lwdvr~~gk~-~~i~ah~~---- 191 (311)
T KOG0277|consen 127 -GTIKLWDPNRPNSVQTFNGHNSCI--YQAAFSPHI-------PNLFASASGDGTLRLWDVRSPGKF-MSIEAHNS---- 191 (311)
T ss_pred -CceEeecCCCCcceEeecCCccEE--EEEecCCCC-------CCeEEEccCCceEEEEEecCCCce-eEEEeccc----
Confidence 799999999999999999999865 556999962 479999999999999999987654 33555543
Q ss_pred cccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI 487 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr 487 (634)
.+.|+-++.- ..||+|+.|+.||.||++.+|.....|.||+-.|+.|.|||--.-|++ |.|-|+|
T Consensus 192 -----------Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 192 -----------EILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred -----------eeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 2345455542 268999999999999999888777788999999999999998876665 7899999
Q ss_pred EEEcc
Q 047036 488 LICTL 492 (634)
Q Consensus 488 LWD~~ 492 (634)
|||..
T Consensus 261 iw~~~ 265 (311)
T KOG0277|consen 261 IWDPE 265 (311)
T ss_pred ecccc
Confidence 99965
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.73 E-value=9e-17 Score=165.35 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=141.1
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM 392 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~ 392 (634)
++++..+++++.| ..|.||++- ..+-...++||++.| +- +.|.+| +..|+|++.|++|+.||+
T Consensus 56 ~P~gs~~aSgG~D------r~I~LWnv~gdceN~~~lkgHsgAV-M~-l~~~~d--------~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 56 HPDGSCFASGGSD------RAIVLWNVYGDCENFWVLKGHSGAV-ME-LHGMRD--------GSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCCCCeEeecCCc------ceEEEEeccccccceeeecccccee-Ee-eeeccC--------CCEEEEecCCceEEEEec
Confidence 3445567778876 689999964 335567789999987 34 489988 789999999999999999
Q ss_pred CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036 393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD 470 (634)
Q Consensus 393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd 470 (634)
+++++ +..+.+|.+.| .+++.+.-| .|.|||.||++||||.+.. .+..+++ -.-++++|.
T Consensus 120 ~tG~~-~rk~k~h~~~v---------------Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~ 181 (338)
T KOG0265|consen 120 ETGKR-IRKHKGHTSFV---------------NSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVG 181 (338)
T ss_pred cccee-eehhcccccee---------------eecCccccCCeEEEecCCCceEEEEeeccc-chhhccc-cceeEEEEE
Confidence 99865 56777776543 333433335 5889999999999998763 3555554 456899999
Q ss_pred ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCc
Q 047036 471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQE 549 (634)
Q Consensus 471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E 549 (634)
|..++..+.+ .-|+-|++||++ ++.++..+.||.... ..+..+|. |
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtI------------------t~lsls~~--------g--- 228 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTI------------------TGLSLSRY--------G--- 228 (338)
T ss_pred ecccccceeeccccCceeeeccc----cCcceEEeecccCce------------------eeEEeccC--------C---
Confidence 9999999999 899999999987 688888899997521 12333333 2
Q ss_pred eEEEE-EcCCeEEEEeChh
Q 047036 550 RHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 550 ~~Ivt-Stg~~viiWdl~~ 567 (634)
..+.+ +-|..+.+||+..
T Consensus 229 s~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred CccccccccceEEEEEecc
Confidence 23334 7899999999874
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=1.1e-16 Score=181.07 Aligned_cols=171 Identities=22% Similarity=0.253 Sum_probs=121.2
Q ss_pred EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036 345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF 424 (634)
Q Consensus 345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f 424 (634)
.+++|+||.+.| +.+ +||- ++.|+|+|-|+|||||++....| +..+. |+ +| +
T Consensus 361 P~~ef~GHt~DI-LDl-SWSK---------n~fLLSSSMDKTVRLWh~~~~~C-L~~F~-Hn----------df-----V 412 (712)
T KOG0283|consen 361 PFCEFKGHTADI-LDL-SWSK---------NNFLLSSSMDKTVRLWHPGRKEC-LKVFS-HN----------DF-----V 412 (712)
T ss_pred chhhhhccchhh-eec-cccc---------CCeeEeccccccEEeecCCCcce-eeEEe-cC----------Ce-----e
Confidence 567899999976 243 7775 47999999999999999987665 45552 32 23 6
Q ss_pred EEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036 425 QCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK 501 (634)
Q Consensus 425 ssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~ 501 (634)
+||+|.|- .|++|||.||.||||++... ...--....+-|++|+|+|||++.+. |.+++++++++. ..+..
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~----~lk~~ 486 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE----GLKLV 486 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcC--eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc----CCeEE
Confidence 89999883 49999999999999998753 23323345589999999999999998 999999999985 34444
Q ss_pred eeecCCCCCCC-CCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeC--hhhh
Q 047036 502 TGFSGRMGNKI-PAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF--QQVK 569 (634)
Q Consensus 502 ~gF~gh~~~~~-p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl--~~v~ 569 (634)
+.+.-+..+.+ .+-+ +| ..+.|.|. ...+.||||.|.-|.|.|+ .+++
T Consensus 487 ~~~~I~~~~~Kk~~~~--rI---------TG~Q~~p~---------~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK--RI---------TGLQFFPG---------DPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred EeeeEeeccCccccCc--ee---------eeeEecCC---------CCCeEEEecCCCceEEEeccchhhh
Confidence 44443332111 1111 11 12333333 2347999999999999999 5444
No 67
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.72 E-value=7.2e-17 Score=178.43 Aligned_cols=224 Identities=15% Similarity=0.253 Sum_probs=160.5
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCc------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGK------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW 390 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW 390 (634)
.+.|++++.| ++|++|++.+-. .+.+++.|.++|+ -+ ..+.+ ++.++|+|+|-||++|
T Consensus 37 ~ryLfTgGRD------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-Di-iL~~~--------~~tlIS~SsDtTVK~W 100 (735)
T KOG0308|consen 37 GRYLFTGGRD------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-DI-ILCGN--------GKTLISASSDTTVKVW 100 (735)
T ss_pred CceEEecCCC------ceEEEeccccccCCcccchhhhhhhhHhHHh-hH-HhhcC--------CCceEEecCCceEEEe
Confidence 3457788876 799999986532 5888999999885 32 44444 5689999999999999
Q ss_pred EcCCCC-ceEEecccCCCCccccccccccccCcceEEEEE-CCCC-eEEEEECCCcEEEEeccccc--------c-cccc
Q 047036 391 DMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAS-TGDG-SIVVGSLDGKIRLYSKTSMR--------Q-AKTA 458 (634)
Q Consensus 391 D~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~-s~dG-~IASGS~DGtIRLWD~~t~r--------~-akt~ 458 (634)
++.... -+..+|..|. +| +.|+|. -++. .+||||.|+.|.|||+.++- + ....
T Consensus 101 ~~~~~~~~c~stir~H~----------DY-----Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 101 NAHKDNTFCMSTIRTHK----------DY-----VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ecccCcchhHhhhhccc----------ch-----heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 998663 2235565443 45 467777 4444 79999999999999998651 0 1124
Q ss_pred cc-CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccc
Q 047036 459 FP-GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHG 536 (634)
Q Consensus 459 L~-GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~ 536 (634)
+. |+.++|++++-++.|..||+ ++.+.|||||.+ +++.+..+.||..+. |.|.+.+.
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNV----r~ll~~dD------------- 224 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNV----RVLLVNDD------------- 224 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccc----cccceeeeeccccce----EEEEEcCC-------------
Confidence 55 99999999999999999999 999999999986 677788899998754 44432211
Q ss_pred ccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc--ccCCCCC
Q 047036 537 GHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF--AVTDSPE 614 (634)
Q Consensus 537 a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f--~~~~~~~ 614 (634)
| .+.|.+|+|+.|.+|||.+ ..| + ..+..|.+.|=+.. +.+.| .++.+.+
T Consensus 225 ---------G--t~~ls~sSDgtIrlWdLgq-----QrC----------l-~T~~vH~e~VWaL~-~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 225 ---------G--TRLLSASSDGTIRLWDLGQ-----QRC----------L-ATYIVHKEGVWALQ-SSPSFTHVYSGGRD 276 (735)
T ss_pred ---------C--CeEeecCCCceEEeeeccc-----cce----------e-eeEEeccCceEEEe-eCCCcceEEecCCC
Confidence 2 4677789999999999863 222 2 23445555554433 35677 3444457
Q ss_pred CCEEEE
Q 047036 615 APLVVA 620 (634)
Q Consensus 615 ~~iivA 620 (634)
++|+.+
T Consensus 277 ~~i~~T 282 (735)
T KOG0308|consen 277 GNIYRT 282 (735)
T ss_pred CcEEec
Confidence 777765
No 68
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.72 E-value=3.1e-15 Score=162.65 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=151.7
Q ss_pred EEEee-e-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 258 SLTLG-A-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 258 ~LavG-~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
..+|+ | |.+.|+++|+ +|+||......+..|+..--|.| |.+-+-.+.|+.+|++.+.-+ .+=
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG----------~I~Di~Wd~ds~RI~avGEGr--erf 128 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG----------PIKDISWDFDSKRIAAVGEGR--ERF 128 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccc----------ccccceeCCCCcEEEEEecCc--cce
Confidence 34444 6 8899999995 99999976655333332222322 556666777788888776533 333
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.+++|| +|.-+-++.||...|+ .++|-|.. .=.++|||+|++|-+++--.- +--.++..|+
T Consensus 129 g~~F~~D--SG~SvGei~GhSr~in--s~~~KpsR-------PfRi~T~sdDn~v~ffeGPPF-KFk~s~r~Hs------ 190 (603)
T KOG0318|consen 129 GHVFLWD--SGNSVGEITGHSRRIN--SVDFKPSR-------PFRIATGSDDNTVAFFEGPPF-KFKSSFREHS------ 190 (603)
T ss_pred eEEEEec--CCCccceeeccceeEe--eeeccCCC-------ceEEEeccCCCeEEEeeCCCe-eeeecccccc------
Confidence 5688888 6889999999999764 56888863 248999999999999983211 1112222222
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc---CCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
.-+.|+-++||| ++|++|.||+|.|||..++. ....|. +|.+.|.+|++|||++.+|+ |.|.+++
T Consensus 191 ---------kFV~~VRysPDG~~Fat~gsDgki~iyDGktge-~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 191 ---------KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred ---------cceeeEEECCCCCeEEEecCCccEEEEcCCCcc-EEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 225789999999 89999999999999998874 555666 99999999999999999999 9999999
Q ss_pred EEEcccccCCCCeeeeec
Q 047036 488 LICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~ 505 (634)
|||+. .++++++|.
T Consensus 261 IWdVs----~~slv~t~~ 274 (603)
T KOG0318|consen 261 IWDVS----TNSLVSTWP 274 (603)
T ss_pred EEEee----ccceEEEee
Confidence 99986 567777765
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2e-17 Score=171.30 Aligned_cols=161 Identities=17% Similarity=0.283 Sum_probs=134.1
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--------EeccCCCcceeEEEEecCCCCCCC
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--------WKFEKDGTDITMRDITNDTKSSQL 372 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--------lkgH~~~V~I~vvsfsPd~K~~q~ 372 (634)
....|+|++ +.|++++-| +-|-+||..+||+-+. |..|.+.|. ++ +|+.|
T Consensus 217 EcA~FSPDg--------qyLvsgSvD------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci-~FSRD------ 274 (508)
T KOG0275|consen 217 ECARFSPDG--------QYLVSGSVD------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CI-SFSRD------ 274 (508)
T ss_pred hheeeCCCC--------ceEeecccc------ceeeeehhccchhhhhhhhhhhcceeecccceE-EE-eeccc------
Confidence 445566655 566677765 7999999999997653 567888773 54 99998
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceEEecc-cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036 373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMV-KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~-gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~ 450 (634)
.+.+|+|+.|+.|++|-++++.|+ ..+. .|+. .++|+.|+.|+ +|.++|.|.+||+--+.
T Consensus 275 --sEMlAsGsqDGkIKvWri~tG~Cl-RrFdrAHtk---------------Gvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 275 --SEMLASGSQDGKIKVWRIETGQCL-RRFDRAHTK---------------GVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred --HHHhhccCcCCcEEEEEEecchHH-HHhhhhhcc---------------CeeEEEEccCcchhhcccccceEEEeccc
Confidence 689999999999999999998774 4443 3433 36899999998 89999999999999999
Q ss_pred ccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecC
Q 047036 451 SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSG 506 (634)
Q Consensus 451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~g 506 (634)
+++ +...|.||+..|+...|++||.+|++ |.|++|++|+.. +++|+.+|.-
T Consensus 337 SGK-~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~ 388 (508)
T KOG0275|consen 337 SGK-CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK----TTECLSTFKP 388 (508)
T ss_pred cch-hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc----chhhhhhccC
Confidence 885 77889999999999999999999999 999999999975 7889999974
No 70
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.1e-16 Score=161.99 Aligned_cols=196 Identities=17% Similarity=0.112 Sum_probs=137.0
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
.+++++|.. + +.+++++.| ++|+|||+. .-+.|+.|+-|+..| ..+++++-. +++++
T Consensus 64 fdV~Wse~~------e-~~~~~a~GD------GSLrl~d~~~~s~Pi~~~kEH~~EV--~Svdwn~~~-------r~~~l 121 (311)
T KOG0277|consen 64 FDVAWSENH------E-NQVIAASGD------GSLRLFDLTMPSKPIHKFKEHKREV--YSVDWNTVR-------RRIFL 121 (311)
T ss_pred eEeeecCCC------c-ceEEEEecC------ceEEEeccCCCCcchhHHHhhhhhe--EEecccccc-------ceeEE
Confidence 456666654 2 345555544 799999953 357899999999986 344777642 57889
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt 457 (634)
++|.|+|||+||+..++. |+++.||++.| ..++|+|- +.+|++|.||++||||++..- ...
T Consensus 122 tsSWD~TiKLW~~~r~~S-v~Tf~gh~~~I---------------y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k~~ 184 (311)
T KOG0277|consen 122 TSSWDGTIKLWDPNRPNS-VQTFNGHNSCI---------------YQAAFSPHIPNLFASASGDGTLRLWDVRSPG-KFM 184 (311)
T ss_pred eeccCCceEeecCCCCcc-eEeecCCccEE---------------EEEecCCCCCCeEEEccCCceEEEEEecCCC-cee
Confidence 999999999999986554 78898877654 45677774 389999999999999976421 123
Q ss_pred cccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036 458 AFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH 535 (634)
Q Consensus 458 ~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft 535 (634)
.++.|...|.+.++|.-...++ + +.|+.||.||++. -...+..+.||.- +-|++ +|+
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---~r~pl~eL~gh~~----AVRkv--------------k~S 243 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---LRTPLFELNGHGL----AVRKV--------------KFS 243 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhh---ccccceeecCCce----EEEEE--------------ecC
Confidence 4899999999999997666665 4 7899999999873 2233444444431 22333 333
Q ss_pred cccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 536 GGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 536 ~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
|-+= ..|++ |-|=++.|||++
T Consensus 244 ph~~----------~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 244 PHHA----------SLLASASYDMTVRIWDPE 265 (311)
T ss_pred cchh----------hHhhhccccceEEecccc
Confidence 3311 24444 558888999987
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=165.19 Aligned_cols=250 Identities=14% Similarity=0.214 Sum_probs=182.2
Q ss_pred CCCeEEEecCe---eeEEEccCCce----ecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036 264 LDNSFLVSDLG---LQVYRNYNRGI----HNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ 336 (634)
Q Consensus 264 ~D~sfvv~G~~---igV~k~~~~gl----~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr 336 (634)
||+.|++.|+. |.||.-..+.+ .++ +.-+|--+ =.|+-.|-++.|+.||.+++-| +.|+
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-Aqd~fMMm-------d~aVlci~FSRDsEMlAsGsqD------GkIK 288 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-AQDNFMMM-------DDAVLCISFSRDSEMLASGSQD------GKIK 288 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhh-hhcceeec-------ccceEEEeecccHHHhhccCcC------CcEE
Confidence 89999999875 55665444321 111 11112111 1356677788899999988876 7999
Q ss_pred EEeCCCCcEEEEEe-ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036 337 QLDIETGKIVTEWK-FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 337 lWDleTGK~V~~lk-gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g 415 (634)
+|-++||+|++.|. .|+.+| ++++|+.| +.+++|+|.|.++|+--+.++++ ++.+.||++-|
T Consensus 289 vWri~tG~ClRrFdrAHtkGv--t~l~FSrD--------~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyv------ 351 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGV--TCLSFSRD--------NSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYV------ 351 (508)
T ss_pred EEEEecchHHHHhhhhhccCe--eEEEEccC--------cchhhcccccceEEEeccccchh-HHHhcCccccc------
Confidence 99999999999997 999997 57799998 68999999999999999998765 57888887654
Q ss_pred cccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCC--CEEEEEcCCcEEEEE
Q 047036 416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDG--KWILGTTDTYLILIC 490 (634)
Q Consensus 416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDG--k~LlSS~D~tIrLWD 490 (634)
.-+.|+++| +|+++|.||+||+|+..+.. +..+|. |..-+|++|-.-|-. .+|++-..++|.|.+
T Consensus 352 ---------n~a~ft~dG~~iisaSsDgtvkvW~~Ktte-C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 352 ---------NEATFTDDGHHIISASSDGTVKVWHGKTTE-CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred ---------cceEEcCCCCeEEEecCCccEEEecCcchh-hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 344678888 89999999999999998864 777776 444688898887754 567777788999998
Q ss_pred cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhh
Q 047036 491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVK 569 (634)
Q Consensus 491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~ 569 (634)
+ .|+-+..|..--. ..-.|..|..++ . | .||-+ +.|+.++-+++.
T Consensus 422 ~-----qGQvVrsfsSGkR--------------------EgGdFi~~~lSp-k--G---ewiYcigED~vlYCF~~~--- 467 (508)
T KOG0275|consen 422 M-----QGQVVRSFSSGKR--------------------EGGDFINAILSP-K--G---EWIYCIGEDGVLYCFSVL--- 467 (508)
T ss_pred c-----cceEEeeeccCCc--------------------cCCceEEEEecC-C--C---cEEEEEccCcEEEEEEee---
Confidence 6 4887777763221 123566676664 1 3 47654 778888888754
Q ss_pred cccccccccccCCcceeeEEEeccCCCeeeec
Q 047036 570 NSAHECYRNQQGLKSCYCYKIVLKDESIVESR 601 (634)
Q Consensus 570 ~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~ 601 (634)
.|.++ -.++.++-.|+...
T Consensus 468 sG~LE-------------~tl~VhEkdvIGl~ 486 (508)
T KOG0275|consen 468 SGKLE-------------RTLPVHEKDVIGLT 486 (508)
T ss_pred cCcee-------------eeeecccccccccc
Confidence 57676 35777766666544
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=3.2e-16 Score=167.78 Aligned_cols=194 Identities=18% Similarity=0.196 Sum_probs=136.0
Q ss_pred CcEEEEeCCCCcE-------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC-CceEEeccc
Q 047036 333 PGVQQLDIETGKI-------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR-SGIVQNMVK 404 (634)
Q Consensus 333 ~TIrlWDleTGK~-------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~-~~~Vq~l~g 404 (634)
.+|.+||+..... ...|.+|.+.|+ -|+|+|-- ..+++++++|+.+.|||+|+. .++.....+
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve--DV~~h~~h-------~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVE--DVAWHPLH-------EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCccee--hhhccccc-------hhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 7999999965432 345899999874 56898862 358899999999999999962 222233333
Q ss_pred CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--
Q 047036 405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-- 480 (634)
Q Consensus 405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-- 480 (634)
| ...+.|++|+|-+ .||+||.|++|+|||++.+++...+|++|.+.|..|.|||.-..|++
T Consensus 271 h---------------~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 271 H---------------SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred c---------------CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 3 3457899999855 69999999999999999887777899999999999999999887776
Q ss_pred EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE-EEE-EcCC
Q 047036 481 TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH-LVA-TVGK 558 (634)
Q Consensus 481 S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~-Ivt-Stg~ 558 (634)
+.|+.+.+||+.- -|+... ......-.|-+|-+..+|.. .-.-|+|+. .+-+ |++ +.|+
T Consensus 336 g~D~rl~vWDls~---ig~eq~----~eda~dgppEllF~HgGH~~--------kV~DfsWnp----~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 336 GTDRRLNVWDLSR---IGEEQS----PEDAEDGPPELLFIHGGHTA--------KVSDFSWNP----NEPWTIASVAEDN 396 (422)
T ss_pred ccCCcEEEEeccc---cccccC----hhhhccCCcceeEEecCccc--------ccccccCCC----CCCeEEEEecCCc
Confidence 6899999999862 233221 01111123445544444432 223455532 2344 444 4588
Q ss_pred eEEEEeChhhh
Q 047036 559 FSVIWDFQQVK 569 (634)
Q Consensus 559 ~viiWdl~~v~ 569 (634)
-+-||..-..+
T Consensus 397 ~LqIW~~s~~i 407 (422)
T KOG0264|consen 397 ILQIWQMAENI 407 (422)
T ss_pred eEEEeeccccc
Confidence 88899986443
No 73
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.71 E-value=9e-17 Score=170.38 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=146.7
Q ss_pred EEEeee-CCCeEEEecCe---eeEEEccCCceecceeEEEecCC--CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSDLG---LQVYRNYNRGIHNKGVSVRFDGG--SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~~---igV~k~~~~gl~~~~~~~~~~~~--~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
+.++-+ +++.++++|++ |.+|...-+.+ .-+..| ..++..+|+|.- + ..+++++|
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV------k~~~ahh~eaIRdlafSpnD-------s-kF~t~SdD----- 201 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV------KIIQAHHAEAIRDLAFSPND-------S-KFLTCSDD----- 201 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhhh------HHhhHhhhhhhheeccCCCC-------c-eeEEecCC-----
Confidence 566666 78999999875 44555333221 112333 345788999853 2 23445543
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++|++||...++.-+.+.||.-.|. .++++|. -.+|||||.|+.|++||+|++.| +.+|.+|...
T Consensus 202 -g~ikiWdf~~~kee~vL~GHgwdVk--svdWHP~--------kgLiasgskDnlVKlWDprSg~c-l~tlh~HKnt--- 266 (464)
T KOG0284|consen 202 -GTIKIWDFRMPKEERVLRGHGWDVK--SVDWHPT--------KGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNT--- 266 (464)
T ss_pred -CeEEEEeccCCchhheeccCCCCcc--eeccCCc--------cceeEEccCCceeEeecCCCcch-hhhhhhccce---
Confidence 7999999999999899999998874 5699997 35999999999999999999887 4677666544
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLIL 488 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrL 488 (634)
+.++.|+++| +|+++|.|..+|+||+++++ -..++.||...|+++.++|=-.-|++ +.|+.|..
T Consensus 267 ------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 267 ------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred ------------EEEEEEcCCCCeeEEccCCceEEEEehhHhH-HHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 5678889998 89999999999999998774 66789999999999999998777776 78999999
Q ss_pred EEcc
Q 047036 489 ICTL 492 (634)
Q Consensus 489 WD~~ 492 (634)
|.+-
T Consensus 334 ~~v~ 337 (464)
T KOG0284|consen 334 WVVG 337 (464)
T ss_pred Eecc
Confidence 9863
No 74
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.4e-16 Score=176.28 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=128.1
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEE-ecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDI-TNDTKSSQLDPSESTFLGLDDNRLCQW 390 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsf-sPd~K~~q~~~g~~laSGS~D~tIklW 390 (634)
-.+++.+++++.| .||++|++..+ =|++++..|++.|. ++++ .++ .+++|||+-|+.|++|
T Consensus 82 ~~~~~tlIS~SsD------tTVK~W~~~~~~~~c~stir~H~DYVk--cla~~ak~--------~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 82 CGNGKTLISASSD------TTVKVWNAHKDNTFCMSTIRTHKDYVK--CLAYIAKN--------NELVASGGLDRKIFLW 145 (735)
T ss_pred hcCCCceEEecCC------ceEEEeecccCcchhHhhhhcccchhe--eeeecccC--------ceeEEecCCCccEEEE
Confidence 4455667777765 79999999988 68899999999873 3355 444 5899999999999999
Q ss_pred EcCCCCc-eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036 391 DMRDRSG-IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 468 (634)
Q Consensus 391 D~R~~~~-~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its 468 (634)
|+.++-. .+.+.... ++..-..| .+-.+.++|.++.| .||+|+-.+.|||||.++.. ....|.||++-|..
T Consensus 146 Din~~~~~l~~s~n~~--t~~sl~sG----~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 146 DINTGTATLVASFNNV--TVNSLGSG----PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRV 218 (735)
T ss_pred EccCcchhhhhhcccc--ccccCCCC----CccceeeeecCCcceEEEecCcccceEEecccccc-ceeeeeccccceEE
Confidence 9987622 12111100 00000001 23456889999999 58999999999999998853 56789999999999
Q ss_pred EEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036 469 VDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 469 VdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
|-+++||+.|+| |.|++|+|||+. ..+|+.+|.-|.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~ 255 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHK 255 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeecc----ccceeeeEEecc
Confidence 999999999999 999999999985 567888877664
No 75
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.68 E-value=6.9e-16 Score=171.70 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=134.3
Q ss_pred EEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE
Q 047036 320 MLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV 399 (634)
Q Consensus 320 llsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V 399 (634)
|++++-| .|+++|-+ |+++..|.||...| +.+.+-|+ +.++|||.|++||+|.- +.++
T Consensus 115 ~iSgSWD------~TakvW~~--~~l~~~l~gH~asV--WAv~~l~e---------~~~vTgsaDKtIklWk~---~~~l 172 (745)
T KOG0301|consen 115 LISGSWD------STAKVWRI--GELVYSLQGHTASV--WAVASLPE---------NTYVTGSADKTIKLWKG---GTLL 172 (745)
T ss_pred eEecccc------cceEEecc--hhhhcccCCcchhe--eeeeecCC---------CcEEeccCcceeeeccC---Cchh
Confidence 7778776 69999976 68999999999987 45566675 48999999999999986 3357
Q ss_pred EecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036 400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL 479 (634)
Q Consensus 400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll 479 (634)
+++.||.+.| ..+|+-+++.++|+|.||.||+|++.+ .....+.||+.-|++|+..+++..|+
T Consensus 173 ~tf~gHtD~V---------------RgL~vl~~~~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~~~~~~~Iv 235 (745)
T KOG0301|consen 173 KTFSGHTDCV---------------RGLAVLDDSHFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISMALSDGLIV 235 (745)
T ss_pred hhhccchhhe---------------eeeEEecCCCeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEecCCCCeEE
Confidence 8898887754 677888899999999999999999865 36777889999999999999999999
Q ss_pred E-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCC
Q 047036 480 G-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGK 558 (634)
Q Consensus 480 S-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~ 558 (634)
| +.|++||||+. +.|.+..+- |... ...-.++. .| ..+|+++|+
T Consensus 236 s~gEDrtlriW~~------~e~~q~I~l---------------Ptts-------iWsa~~L~----Ng---DIvvg~SDG 280 (745)
T KOG0301|consen 236 STGEDRTLRIWKK------DECVQVITL---------------PTTS-------IWSAKVLL----NG---DIVVGGSDG 280 (745)
T ss_pred EecCCceEEEeec------CceEEEEec---------------Cccc-------eEEEEEee----CC---CEEEeccCc
Confidence 9 99999999983 455443321 1111 11112221 13 477889999
Q ss_pred eEEEEeCh
Q 047036 559 FSVIWDFQ 566 (634)
Q Consensus 559 ~viiWdl~ 566 (634)
.|+||...
T Consensus 281 ~VrVfT~~ 288 (745)
T KOG0301|consen 281 RVRVFTVD 288 (745)
T ss_pred eEEEEEec
Confidence 99999875
No 76
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.2e-15 Score=150.31 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=151.6
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEEE-eccCCCcceeEEEEecCCCCCCCCCCC
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSE 376 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~ 376 (634)
-+.++.|.+ +.+|.+++.| ++||+|++..| .++..+ .+|+..|+ .++++|. |+
T Consensus 18 W~~awhp~~-------g~ilAscg~D------k~vriw~~~~~~s~~ck~vld~~hkrsVR--svAwsp~--------g~ 74 (312)
T KOG0645|consen 18 WSVAWHPGK-------GVILASCGTD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVR--SVAWSPH--------GR 74 (312)
T ss_pred EEEEeccCC-------ceEEEeecCC------ceEEEEecCCCCcEEEEEeccccchheee--eeeecCC--------Cc
Confidence 455666663 2345556654 79999999843 344344 47999875 5699998 78
Q ss_pred EEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-
Q 047036 377 STFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR- 453 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r- 453 (634)
+|++||.|.|+.||--..+. .++.+|.||... +-|++++++| +||++|.|..|=+|......
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE---------------VK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENE---------------VKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccc---------------eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 99999999999999765442 457888776543 5799999999 89999999999999976321
Q ss_pred -cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036 454 -QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD 531 (634)
Q Consensus 454 -~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~ 531 (634)
.+...|.+|+.-|..|.+.|.-..|+| |.|+||++|.-.. +.+=.|.+++.||.+- ...
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~T------------------VW~ 200 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENT------------------VWS 200 (312)
T ss_pred EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccce------------------EEE
Confidence 356789999999999999999999999 9999999998543 3456778888888641 134
Q ss_pred cccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036 532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~ 569 (634)
+.|.+. | .++..++.|..|.||-+-..+
T Consensus 201 ~~F~~~--------G--~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 201 LAFDNI--------G--SRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred EEecCC--------C--ceEEEecCCcceEeeeeccCc
Confidence 566655 3 355666788999999754333
No 77
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.67 E-value=1.4e-14 Score=152.35 Aligned_cols=249 Identities=14% Similarity=0.182 Sum_probs=177.9
Q ss_pred cCCCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCC
Q 047036 253 NGGVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKD 327 (634)
Q Consensus 253 ~~~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~ 327 (634)
.....+.||+- |++.+++.| ++--||+...+. ....+.+|+ ++..+.|+-++.+ |+++..+
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----~~~eltgHKDSVt~~~Fshdgtl--------LATGdms- 127 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----FAGELTGHKDSVTCCSFSHDGTL--------LATGDMS- 127 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----ceeEecCCCCceEEEEEccCceE--------EEecCCC-
Confidence 34556899998 788899976 677889976653 345667774 3456666666554 4444443
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036 328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
+.|++|.+.+|....++...-+.+ .++ .++|- +..++.|+.|+.|..|.+-.+ ...+.+.||++
T Consensus 128 -----G~v~v~~~stg~~~~~~~~e~~di-eWl-~WHp~--------a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 128 -----GKVLVFKVSTGGEQWKLDQEVEDI-EWL-KWHPR--------AHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNS 191 (399)
T ss_pred -----ccEEEEEcccCceEEEeecccCce-EEE-Eeccc--------ccEEEeecCCCcEEEEECCCc-ceeeEecCCCC
Confidence 789999999999999986555544 254 99996 679999999999999999875 34578888776
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
+ ++|-.|.|+| +|++|..||+||+||+.+++ ....+. .-+.+-++++++.+|..+++ +.++
T Consensus 192 ~---------------ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 192 P---------------CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred C---------------cccccccCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccCCc
Confidence 5 4677889999 89999999999999999874 444444 22456789999999999999 8899
Q ss_pred cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036 485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD 564 (634)
Q Consensus 485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd 564 (634)
.+++-... .|+-+..+.+.. | .|+|.+.+.. ..+.|.|- + + .-.-..+++.|+.|.|||
T Consensus 256 ~~~~~~~~----sgKVv~~~n~~~----~-----~l~~~~e~~~-esve~~~~--s--s---~lpL~A~G~vdG~i~iyD 314 (399)
T KOG0296|consen 256 VACGVNNG----SGKVVNCNNGTV----P-----ELKPSQEELD-ESVESIPS--S--S---KLPLAACGSVDGTIAIYD 314 (399)
T ss_pred cEEEEccc----cceEEEecCCCC----c-----cccccchhhh-hhhhhccc--c--c---ccchhhcccccceEEEEe
Confidence 99988753 677776666522 1 2344443221 23555543 1 1 001233457899999999
Q ss_pred Chhh
Q 047036 565 FQQV 568 (634)
Q Consensus 565 l~~v 568 (634)
+.+-
T Consensus 315 ~a~~ 318 (399)
T KOG0296|consen 315 LAAS 318 (399)
T ss_pred cccc
Confidence 9743
No 78
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=6.1e-17 Score=180.59 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=139.9
Q ss_pred eEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC
Q 047036 267 SFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG 343 (634)
Q Consensus 267 sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG 343 (634)
.+++.| .++++|....= ..+..|.+|. +|...+-++.+..+|.+++.+ ++|++|||+++
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp-----~~i~S~~~he-------spIeSl~f~~~E~Llaagsas------gtiK~wDleeA 102 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKP-----NAITSLTGHE-------SPIESLTFDTSERLLAAGSAS------GTIKVWDLEEA 102 (825)
T ss_pred eeeccCCCceeeccccccCC-----chhheeeccC-------CcceeeecCcchhhhcccccC------Cceeeeehhhh
Confidence 455555 57777764221 1344455652 344444445555566666654 79999999999
Q ss_pred cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcc
Q 047036 344 KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTN 423 (634)
Q Consensus 344 K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~ 423 (634)
+++++|.||...+ +.|+|+|- +.+.++||.|.-+++||.|-.+| +..+.+|.. .
T Consensus 103 k~vrtLtgh~~~~--~sv~f~P~--------~~~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~~---------------v 156 (825)
T KOG0267|consen 103 KIVRTLTGHLLNI--TSVDFHPY--------GEFFASGSTDTDLKIWDIRKKGC-SHTYKSHTR---------------V 156 (825)
T ss_pred hhhhhhhccccCc--ceeeeccc--------eEEeccccccccceehhhhccCc-eeeecCCcc---------------e
Confidence 9999999999864 56699997 67889999999999999997665 566655432 1
Q ss_pred eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+.++.++|+| ++|+|+.|.+|+|||+..++ ....|++|...|.+|+|.|-.-.|++ +.|.+|++||++
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccc-cccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 4678999999 89999999999999987763 77889999999999999999766666 999999999976
No 79
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.4e-15 Score=150.22 Aligned_cols=155 Identities=10% Similarity=0.125 Sum_probs=124.7
Q ss_pred CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCC
Q 047036 298 SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPS 375 (634)
Q Consensus 298 ~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g 375 (634)
+++++++++|.+.. |.+++-| .|+-+|--+.| +++.+++||.+.| -.++|+++ |
T Consensus 62 rsVRsvAwsp~g~~--------La~aSFD------~t~~Iw~k~~~efecv~~lEGHEnEV--K~Vaws~s--------G 117 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRY--------LASASFD------ATVVIWKKEDGEFECVATLEGHENEV--KCVAWSAS--------G 117 (312)
T ss_pred heeeeeeecCCCcE--------EEEeecc------ceEEEeecCCCceeEEeeeeccccce--eEEEEcCC--------C
Confidence 34588999988754 4556665 69999987655 7899999999988 45699998 7
Q ss_pred CEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEECCCcEEEEecc-c
Q 047036 376 ESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKT-S 451 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~-t 451 (634)
++||++|.|++|-+|.+.... .++..|.+|..-| --+.+.|. +.|||+|.|++||+|.-. .
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV---------------K~V~WHPt~dlL~S~SYDnTIk~~~~~~d 182 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV---------------KHVIWHPTEDLLFSCSYDNTIKVYRDEDD 182 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc---------------cEEEEcCCcceeEEeccCCeEEEEeecCC
Confidence 899999999999999988543 2456677666533 33466775 489999999999999865 2
Q ss_pred c-ccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 452 M-RQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 452 ~-r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
. =.+..+|.||...|.+++|.|.|..|++ +.|++++||-.
T Consensus 183 ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 183 DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 1 1356789999999999999999999999 99999999984
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.7e-15 Score=163.52 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=173.5
Q ss_pred cEEEeee-CCCeEEEec-CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 257 QSLTLGA-LDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
.+|+.+- +--.|+|.+ .++.+|.....+.. ..+-+|.. ..-+..| ..|+.++++|.. .+.
T Consensus 30 ssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~srFk~--~v~s~~f--------R~DG~LlaaGD~------sG~ 91 (487)
T KOG0310|consen 30 SSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFSRFKD--VVYSVDF--------RSDGRLLAAGDE------SGH 91 (487)
T ss_pred eeEecCCCCCCceEEecccEEEEEecchhhhh--hhHHhhcc--ceeEEEe--------ecCCeEEEccCC------cCc
Confidence 3444443 233677765 58888875443310 01112211 0123333 455555555433 289
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ 414 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~ 414 (634)
|+++|..+.-+++.+.+|+..| .++.|+|.. +..+++|++|+.+++||+.+.- ++..+.+|.+
T Consensus 92 V~vfD~k~r~iLR~~~ah~apv--~~~~f~~~d-------~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htD------- 154 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLYAHQAPV--HVTKFSPQD-------NTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTD------- 154 (487)
T ss_pred EEEeccccHHHHHHHhhccCce--eEEEecccC-------CeEEEecCCCceEEEEEcCCcE-EEEEecCCcc-------
Confidence 9999988777899999999976 577999983 4689999999999999998753 3336666543
Q ss_pred ccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 415 GHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 415 g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
| +.|.+++|. + .++|||.||+|||||.++.......| .|+.||-+|.|=|.|..||+..-+.+++||+.
T Consensus 155 ---Y-----VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 155 ---Y-----VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred ---e-----eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 4 467777765 4 58999999999999976532122344 59999999999999999999888999999986
Q ss_pred cccCCCCee-eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036 493 FSDKDGKTK-TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS 571 (634)
Q Consensus 493 ~~~~~G~~~-~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~ 571 (634)
.|..+ ..+..|.. .+ |--+++. ...++|.+|-|+.|.|+|+..
T Consensus 226 ----~G~qll~~~~~H~K---------------------tV--TcL~l~s-----~~~rLlS~sLD~~VKVfd~t~---- 269 (487)
T KOG0310|consen 226 ----TGGQLLTSMFNHNK---------------------TV--TCLRLAS-----DSTRLLSGSLDRHVKVFDTTN---- 269 (487)
T ss_pred ----CCceehhhhhcccc---------------------eE--EEEEeec-----CCceEeecccccceEEEEccc----
Confidence 33332 22222331 11 1222221 113566668899999999652
Q ss_pred cccccccccCCcceeeEEE---eccCCCeeeeccccCccccCCCCCCCEEEEcCCceeee
Q 047036 572 AHECYRNQQGLKSCYCYKI---VLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSI 628 (634)
Q Consensus 572 ~~~~y~~~~~~~~~~~Y~i---~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~ 628 (634)
|++ -+|...|.+...-+ .+..|++.+.|-.-++
T Consensus 270 ----------------~Kvv~s~~~~~pvLsiavs~--------dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 270 ----------------YKVVHSWKYPGPVLSIAVSP--------DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ----------------eEEEEeeecccceeeEEecC--------CCceEEEecccceeee
Confidence 333 35777888777622 2357777776654444
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=4.4e-15 Score=150.82 Aligned_cols=209 Identities=17% Similarity=0.258 Sum_probs=148.7
Q ss_pred CcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 256 VQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 256 ~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.++-.|++ -|++.+++| .++.||....+.+. ......+|. ++.-.++.|. ...++++.+.|
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~-------~~d~~atas~d---- 86 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPK-------HPDLFATASGD---- 86 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCC-------CCcceEEecCC----
Confidence 45777888 689999987 58888886554211 112234442 2233334444 34556666665
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--------EEec
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--------VQNM 402 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--------Vq~l 402 (634)
++|++||+.+||++.+....... |.+ .++|+ |++++.|..|..|-..|.|..+-. +..+
T Consensus 87 --k~ir~wd~r~~k~~~~i~~~~en--i~i-~wsp~--------g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~ 153 (313)
T KOG1407|consen 87 --KTIRIWDIRSGKCTARIETKGEN--INI-TWSPD--------GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEI 153 (313)
T ss_pred --ceEEEEEeccCcEEEEeeccCcc--eEE-EEcCC--------CCEEEEecCcccEEEEEecccceeehhcccceeeee
Confidence 69999999999999988766653 455 89998 789999999999999999964210 1111
Q ss_pred ccCCC-------------Ccccccccc-cc---ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036 403 VKGDS-------------PVLHWTQGH-QF---SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS 464 (634)
Q Consensus 403 ~gh~s-------------~V~~~~~g~-~y---~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d 464 (634)
.-|.+ -|+.|-..+ .+ ++..+.-|+.|+|+| ++|+||.|-.+-|||+..+ -+.+.|+-|.-
T Consensus 154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~R~isRldw 232 (313)
T KOG1407|consen 154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICERCISRLDW 232 (313)
T ss_pred eecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-hhheeeccccC
Confidence 10100 011111111 01 245567899999999 8999999999999999876 47788999999
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
||+.|+||.||++||| |.|.+|-|-++.
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecc
Confidence 9999999999999999 999999998886
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.66 E-value=1.3e-14 Score=152.64 Aligned_cols=240 Identities=13% Similarity=0.197 Sum_probs=159.0
Q ss_pred cEEEeee-CCCeEEEecC---eeeEEEccCCceecce-----eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036 257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKG-----VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD 327 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~-----~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~ 327 (634)
.+.+++| +|+.|++.|. ++.||+...++.+++- -+..+. +.|.. ..|++++.|
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~---------WHp~a--------~illAG~~D- 169 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLK---------WHPRA--------HILLAGSTD- 169 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEE---------ecccc--------cEEEeecCC-
Confidence 4677777 7888888884 7888887766533221 111111 23433 234445443
Q ss_pred CCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036 328 GKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 328 ~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
+.|..|.+..+...+.|.||...+ ++-.|.|+ |..+++|..|++|++||+.++.. +..+.+...
T Consensus 170 -----GsvWmw~ip~~~~~kv~~Gh~~~c--t~G~f~pd--------GKr~~tgy~dgti~~Wn~ktg~p-~~~~~~~e~ 233 (399)
T KOG0296|consen 170 -----GSVWMWQIPSQALCKVMSGHNSPC--TCGEFIPD--------GKRILTGYDDGTIIVWNPKTGQP-LHKITQAEG 233 (399)
T ss_pred -----CcEEEEECCCcceeeEecCCCCCc--ccccccCC--------CceEEEEecCceEEEEecCCCce-eEEeccccc
Confidence 799999999989999999999976 45689999 56899999999999999998753 233321100
Q ss_pred ---Cccccc---------------------cccccccCc------------ceEEEEECCCC----eEEEEECCCcEEEE
Q 047036 408 ---PVLHWT---------------------QGHQFSRGT------------NFQCFASTGDG----SIVVGSLDGKIRLY 447 (634)
Q Consensus 408 ---~V~~~~---------------------~g~~y~~~~------------~fssva~s~dG----~IASGS~DGtIRLW 447 (634)
+.+..+ .|+-....+ ...|+.+.|-. ..|+|+.||+|-||
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 000000 011000000 11233333322 46899999999999
Q ss_pred eccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcc
Q 047036 448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSH 526 (634)
Q Consensus 448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~ 526 (634)
|....+ .+..++ |.++|+.|-|-+ -.||++ +.++.|++||++ +|+++.+|+||....
T Consensus 314 D~a~~~-~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR----tG~l~~~y~GH~~~I--------------- 371 (399)
T KOG0296|consen 314 DLAAST-LRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDAR----TGQLKFTYTGHQMGI--------------- 371 (399)
T ss_pred ecccch-hheecc-CCCceEEEEEcC-cchheeeccCceEEeeecc----ccceEEEEecCchhe---------------
Confidence 987642 444454 999999999999 688888 889999999998 799999999998421
Q ss_pred ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 527 LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 527 ~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
.....+|. ++.||| |.|+...|+.+.
T Consensus 372 ---l~f~ls~~-----------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 372 ---LDFALSPQ-----------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ---eEEEEcCC-----------CcEEEEecCCCeEEEEecC
Confidence 12233333 245555 778888888653
No 83
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=3.3e-15 Score=160.06 Aligned_cols=217 Identities=13% Similarity=0.136 Sum_probs=147.3
Q ss_pred CcEEEEeCCCC--cEEE--------EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-----
Q 047036 333 PGVQQLDIETG--KIVT--------EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG----- 397 (634)
Q Consensus 333 ~TIrlWDleTG--K~V~--------~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~----- 397 (634)
+.|++||..+- +... +|+||.+.= .-++|++..+ -.|++|++|.+|++||+.....
T Consensus 147 ~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~~~-------g~Lls~~~d~~i~lwdi~~~~~~~~~~ 217 (422)
T KOG0264|consen 147 GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQQE-------GTLLSGSDDHTICLWDINAESKEDKVV 217 (422)
T ss_pred CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccccc-------eeEeeccCCCcEEEEeccccccCCccc
Confidence 57999997652 2222 799999821 2358888743 4899999999999999975422
Q ss_pred -eEEecccCCCCccccccccccccCcceEEEEECC--CCeEEEEECCCcEEEEecccc-ccccccccCCCCCeEEEEECC
Q 047036 398 -IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSKTSM-RQAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 398 -~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~--dG~IASGS~DGtIRLWD~~t~-r~akt~L~GH~d~ItsVdfSp 473 (634)
+...+.+|.+.| .-+++.+ ...+++++.|+.+.|||.++. .++....++|+.+|++|+|+|
T Consensus 218 ~p~~~~~~h~~~V---------------eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp 282 (422)
T KOG0264|consen 218 DPKTIFSGHEDVV---------------EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP 282 (422)
T ss_pred cceEEeecCCcce---------------ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence 123344555443 2334444 347899999999999998842 234456779999999999999
Q ss_pred CCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE
Q 047036 474 DGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH 551 (634)
Q Consensus 474 DGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~ 551 (634)
=+.+|++ |+|+||.|||++ .-.+.+..|.+|-.+. ..+.|+|. .+..
T Consensus 283 ~~~~ilAT~S~D~tV~LwDlR---nL~~~lh~~e~H~dev------------------~~V~WSPh----------~etv 331 (422)
T KOG0264|consen 283 FNEFILATGSADKTVALWDLR---NLNKPLHTFEGHEDEV------------------FQVEWSPH----------NETV 331 (422)
T ss_pred CCCceEEeccCCCcEEEeech---hcccCceeccCCCcce------------------EEEEeCCC----------CCce
Confidence 8888776 789999999987 2455677788776532 12445544 2456
Q ss_pred EEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 552 LVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 552 Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
+++ ++|+.+.|||+.+|-.-+.. ...+.+.--.-+.=.+|...|+|..+ +++.
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~--eda~dgppEllF~HgGH~~kV~DfsW-np~e 385 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSP--EDAEDGPPELLFIHGGHTAKVSDFSW-NPNE 385 (422)
T ss_pred eEecccCCcEEEEeccccccccCh--hhhccCCcceeEEecCcccccccccC-CCCC
Confidence 666 67999999999987654431 11222333333666677778886666 4444
No 84
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.3e-16 Score=177.90 Aligned_cols=184 Identities=13% Similarity=0.217 Sum_probs=146.8
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
++.++.++.+ ..+-||-+..--.+..|.+|...|. .+.|+++ ..+|+.|+.+++||+||+...
T Consensus 40 ~r~~~~Gg~~------~k~~L~~i~kp~~i~S~~~hespIe--Sl~f~~~--------E~LlaagsasgtiK~wDleeA- 102 (825)
T KOG0267|consen 40 SRSLVTGGED------EKVNLWAIGKPNAITSLTGHESPIE--SLTFDTS--------ERLLAAGSASGTIKVWDLEEA- 102 (825)
T ss_pred ceeeccCCCc------eeeccccccCCchhheeeccCCcce--eeecCcc--------hhhhcccccCCceeeeehhhh-
Confidence 3445556554 4677898876666778999999864 5689887 469999999999999999865
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG 475 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG 475 (634)
++|++|.||... +.++.|+|-| +.|+||.|+.+++||.+.+ .+...+.||..-|..+.|+|||
T Consensus 103 k~vrtLtgh~~~---------------~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 103 KIVRTLTGHLLN---------------ITSVDFHPYGEFFASGSTDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred hhhhhhhccccC---------------cceeeeccceEEeccccccccceehhhhcc-CceeeecCCcceeEEEeecCCC
Confidence 467888877543 4567789988 8899999999999998754 4778899999999999999999
Q ss_pred CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036 476 KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA 554 (634)
Q Consensus 476 k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt 554 (634)
+|+++ +.|++++|||.. .|+.+..|.+|.+.. ..+-|.|..| .+.+
T Consensus 167 r~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v------------------~sle~hp~e~-----------Lla~ 213 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKV------------------QSLEFHPLEV-----------LLAP 213 (825)
T ss_pred ceeeccCCcceeeeeccc----ccccccccccccccc------------------cccccCchhh-----------hhcc
Confidence 99999 888999999986 699999999998632 1234555522 3333
Q ss_pred -EcCCeEEEEeCh
Q 047036 555 -TVGKFSVIWDFQ 566 (634)
Q Consensus 555 -Stg~~viiWdl~ 566 (634)
|.|+.|..||++
T Consensus 214 Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 214 GSSDRTVRFWDLE 226 (825)
T ss_pred CCCCceeeeeccc
Confidence 679999999998
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.64 E-value=2.3e-13 Score=148.28 Aligned_cols=289 Identities=16% Similarity=0.157 Sum_probs=191.5
Q ss_pred EEEeee-CCCeEEE-e---cCeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 258 SLTLGA-LDNSFLV-S---DLGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 258 ~LavG~-~D~sfvv-~---G~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
.+++.+ +-|-|.+ . +..|.+|...+- .|+ ..+..| +.+..+.|+|++ ++.++.+.|
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF--KFk---~s~r~HskFV~~VRysPDG--------~~Fat~gsD----- 211 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPF--KFK---SSFREHSKFVNCVRYSPDG--------SRFATAGSD----- 211 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCe--eee---ecccccccceeeEEECCCC--------CeEEEecCC-----
Confidence 677777 7776655 2 357777775442 121 112222 223566666665 455666665
Q ss_pred CCcEEEEeCCCCcEEEEEe---ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC-
Q 047036 332 APGVQQLDIETGKIVTEWK---FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS- 407 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lk---gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s- 407 (634)
++|+++|-.||+.+.+|. +|+++| ..++++|| +.+++|+|.|+++|+||+.+.. +++++.--..
T Consensus 212 -gki~iyDGktge~vg~l~~~~aHkGsI--falsWsPD--------s~~~~T~SaDkt~KIWdVs~~s-lv~t~~~~~~v 279 (603)
T KOG0318|consen 212 -GKIYIYDGKTGEKVGELEDSDAHKGSI--FALSWSPD--------STQFLTVSADKTIKIWDVSTNS-LVSTWPMGSTV 279 (603)
T ss_pred -ccEEEEcCCCccEEEEecCCCCccccE--EEEEECCC--------CceEEEecCCceEEEEEeeccc-eEEEeecCCch
Confidence 799999999999999998 999986 56799999 6799999999999999998753 4555421000
Q ss_pred ------Ccccccccc-----------------------ccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036 408 ------PVLHWTQGH-----------------------QFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 408 ------~V~~~~~g~-----------------------~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt 457 (634)
.+ |...| -+-++..++|++.+++| +|.|||.||.|--||..++.+.+.
T Consensus 280 ~dqqvG~l--Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 280 EDQQVGCL--WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred hceEEEEE--EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 00 11111 11145678999999999 899999999999999887643322
Q ss_pred cccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCC-CCCCCceeEeecCCC-ccc--------
Q 047036 458 AFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMG-NKIPAPRLLKLTPLD-SHL-------- 527 (634)
Q Consensus 458 ~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~-~~~p~pr~L~L~Pe~-~~~-------- 527 (634)
.=.+|+..|.+++.+-.|.++-+++|.+|++.++. + .+|.++.. .-..+|+.|...+.. .+.
T Consensus 358 ~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~-----~---~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv 429 (603)
T KOG0318|consen 358 AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK-----D---NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIV 429 (603)
T ss_pred ccccccceEEEEeecCCCcEEEEecCCeEEEEecc-----c---CcccccceeecCCCceeEEEcCCCCEEEEEecCcEE
Confidence 22689999999999999888877999999999975 1 12444432 223567888777653 100
Q ss_pred --------cCCCccccccc--ccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCe
Q 047036 528 --------AGTDNKIHGGH--FSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESI 597 (634)
Q Consensus 528 --------~g~~i~Ft~a~--Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i 597 (634)
...++.|.+.. +++ .+...+|++.|+-|.|+.|.. +.+. --=++..+...|
T Consensus 430 ~l~~~~~~~~~~~~y~~s~vAv~~-----~~~~vaVGG~Dgkvhvysl~g---~~l~-----------ee~~~~~h~a~i 490 (603)
T KOG0318|consen 430 LLQDQTKVSSIPIGYESSAVAVSP-----DGSEVAVGGQDGKVHVYSLSG---DELK-----------EEAKLLEHRAAI 490 (603)
T ss_pred EEecCCcceeeccccccceEEEcC-----CCCEEEEecccceEEEEEecC---Cccc-----------ceeeeecccCCc
Confidence 01133444332 222 124577788888899998863 1111 112566677788
Q ss_pred eeeccccC
Q 047036 598 VESRFMHD 605 (634)
Q Consensus 598 ~~~~f~~d 605 (634)
.+++|-+|
T Consensus 491 T~vaySpd 498 (603)
T KOG0318|consen 491 TDVAYSPD 498 (603)
T ss_pred eEEEECCC
Confidence 88887333
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.63 E-value=4.6e-15 Score=149.98 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=137.2
Q ss_pred cEEEeee-CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
-+.|++| -|-.+++.|. -++||....-. ....++.+|+ .| .+.+++--+-+.||++.+|
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~----App~E~~ght--g~-----Ir~v~wc~eD~~iLSSadd------ 164 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----APPKEISGHT--GG-----IRTVLWCHEDKCILSSADD------ 164 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCC----CCchhhcCCC--Cc-----ceeEEEeccCceEEeeccC------
Confidence 3788999 6888888774 45556532211 1222355542 11 1223333344567777554
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++||+||..||+.++++..... +...-++++ | .+++-..-.+|++||+.+-+ +++
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~---VtSlEvs~d--------G-~ilTia~gssV~Fwdaksf~-~lK------------ 219 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSP---VTSLEVSQD--------G-RILTIAYGSSVKFWDAKSFG-LLK------------ 219 (334)
T ss_pred CceEEEEeccCcEEEEEecCCC---CcceeeccC--------C-CEEEEecCceeEEecccccc-cee------------
Confidence 7999999999999999987654 345688887 3 46666778899999997643 222
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc-cCCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF-PGLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L-~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
.|.--.++.++...|+. .++.|+.|..++-||-.++. -+-.+ .||-+||.+|.|||||..-++ |.|++||||
T Consensus 220 ----s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 220 ----SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ----eccCccccccccccCCCceEEecCcceEEEEEeccCCc-eeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 23344567777788875 78999999999999999875 44444 899999999999999999999 999999999
Q ss_pred Ecccc
Q 047036 490 CTLFS 494 (634)
Q Consensus 490 D~~~~ 494 (634)
.+.++
T Consensus 295 Qt~~~ 299 (334)
T KOG0278|consen 295 QTTPG 299 (334)
T ss_pred EecCC
Confidence 98753
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=155.52 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=122.3
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
.+...++.++.| ..||+|.+..-........|...|+ -+...|. |++++++|+|+++.+-|.++
T Consensus 271 ~~~~~v~~aSad------~~i~vws~~~~s~~~~~~~h~~~V~--~ls~h~t--------geYllsAs~d~~w~Fsd~~~ 334 (506)
T KOG0289|consen 271 KDLDTVITASAD------EIIRVWSVPLSSEPTSSRPHEEPVT--GLSLHPT--------GEYLLSASNDGTWAFSDISS 334 (506)
T ss_pred cchhheeecCCc------ceEEeeccccccCccccccccccce--eeeeccC--------CcEEEEecCCceEEEEEccC
Confidence 334456666665 5899999988888888999999874 4588887 78999999999999999999
Q ss_pred CCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp 473 (634)
+.++.+... . .+.+.++|++|.||| .+++|+.||.||+||+... .....||||+.||++|.||-
T Consensus 335 g~~lt~vs~-------------~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsE 399 (506)
T KOG0289|consen 335 GSQLTVVSD-------------E-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSE 399 (506)
T ss_pred CcEEEEEee-------------c-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEecc
Confidence 876432211 1 134568999999999 5799999999999999986 47889999999999999999
Q ss_pred CCCEEEE-EcCCcEEEEEcc
Q 047036 474 DGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 474 DGk~LlS-S~D~tIrLWD~~ 492 (634)
+|-|||+ +.|+.|+|||++
T Consensus 400 NGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred CceEEEEEecCCeEEEEEeh
Confidence 9999999 677789999987
No 88
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.63 E-value=3.9e-15 Score=154.00 Aligned_cols=197 Identities=16% Similarity=0.245 Sum_probs=145.7
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-----------------C-cEEEEEeccCCCcceeEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-----------------G-KIVTEWKFEKDGTDITMRD 362 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-----------------G-K~V~~lkgH~~~V~I~vvs 362 (634)
+..+|+|++ .++..++.| -.|+++|+++ + -+||+|-.|.+.|+ .+.
T Consensus 116 R~aafs~DG--------~lvATGsaD------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn--~l~ 179 (430)
T KOG0640|consen 116 RAAAFSPDG--------SLVATGSAD------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVN--DLD 179 (430)
T ss_pred eeeeeCCCC--------cEEEccCCc------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccc--cee
Confidence 445555555 455667765 5899999981 1 48999999999875 569
Q ss_pred EecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC
Q 047036 363 ITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD 441 (634)
Q Consensus 363 fsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D 441 (634)
|+|- ..+|+||+.|++|+++|..... ++.- .+.+....++.|+.|.|.| +|++|..-
T Consensus 180 FHPr--------e~ILiS~srD~tvKlFDfsK~s--aKrA------------~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 180 FHPR--------ETILISGSRDNTVKLFDFSKTS--AKRA------------FKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred ecch--------hheEEeccCCCeEEEEecccHH--HHHH------------HHHhhccceeeeEeecCCCceEEEecCC
Confidence 9997 5799999999999999986321 1100 1122344578999999999 89999999
Q ss_pred CcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeE
Q 047036 442 GKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLL 518 (634)
Q Consensus 442 GtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L 518 (634)
.++||||+.+.+.-....| +|++.|++|..|+.|+.-++ |.|+.|+|||-. .++|+.+|...-+.
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~g-------- 305 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGG-------- 305 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCC--------
Confidence 9999999988643223334 79999999999999999998 999999999964 68888888743321
Q ss_pred eecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 519 KLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 519 ~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
-.-+.+.|.. +| ++|.+ +.|..|++|-+-
T Consensus 306 -------------sevcSa~Ftk---n~---kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 306 -------------SEVCSAVFTK---NG---KYILSSGKDSTVKLWEIS 335 (430)
T ss_pred -------------ceeeeEEEcc---CC---eEEeecCCcceeeeeeec
Confidence 1123444432 13 67766 569999999875
No 89
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=2e-14 Score=151.61 Aligned_cols=189 Identities=15% Similarity=0.196 Sum_probs=127.6
Q ss_pred CcEEEEeCCCCcEE---EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc--eEEecccCCC
Q 047036 333 PGVQQLDIETGKIV---TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG--IVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V---~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~--~Vq~l~gh~s 407 (634)
+.|++|-..+|.-. +.|.||+..|. -+++||.- ...+||||-|++|+|||+|.+.+ ++.+ ..|.+
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVE--DLqWSptE-------~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s 303 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVE--DLQWSPTE-------DGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS 303 (440)
T ss_pred cceEeeeeccCceeecCccccccccchh--hhccCCcc-------CceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence 67999999998753 35889999985 45999973 36999999999999999998732 1221 33333
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccccCCCCCeEEEEECCCCCE-EEE-Ec
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSPITHVDVTYDGKW-ILG-TT 482 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~ 482 (634)
.+..+.++..- .||+|+.||+++|||++..+ +...+|+-|..||++|.++|...- |++ +.
T Consensus 304 ---------------DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 304 ---------------DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred ---------------ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence 45566666654 79999999999999987643 344578899999999999986544 444 89
Q ss_pred CCcEEEEEcccccCCCCee--eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeE
Q 047036 483 DTYLILICTLFSDKDGKTK--TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFS 560 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~--~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~v 560 (634)
|+.|.|||+.. +.+-+.. ....+ +. .-.|.+|-+...+..+ +++.|++. . . | ..|.|+.++|-
T Consensus 369 D~QitiWDlsv-E~D~ee~~~~a~~~-L~--dlPpQLLFVHqGQke~--KevhWH~Q--i--P--G---~lvsTa~dGfn 433 (440)
T KOG0302|consen 369 DNQITIWDLSV-EADEEEIDQEAAEG-LQ--DLPPQLLFVHQGQKEV--KEVHWHRQ--I--P--G---LLVSTAIDGFN 433 (440)
T ss_pred CCcEEEEEeec-cCChhhhccccccc-hh--cCCceeEEEecchhHh--hhheeccC--C--C--C---eEEEeccccee
Confidence 99999999753 1110000 00111 11 1235566655444322 56778876 1 1 3 34455777774
Q ss_pred E
Q 047036 561 V 561 (634)
Q Consensus 561 i 561 (634)
|
T Consensus 434 V 434 (440)
T KOG0302|consen 434 V 434 (440)
T ss_pred E
Confidence 4
No 90
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.5e-14 Score=154.84 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=118.7
Q ss_pred eeEEeCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036 310 ALLMRGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC 388 (634)
Q Consensus 310 ~mL~~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk 388 (634)
.|+++..-+ .|++++.| +||++||+.+|++.+++..|.+.| ..+.|.|.. ++.|++||.|++|.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD------~TV~lWD~~~g~p~~s~~~~~k~V--q~l~wh~~~-------p~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSAD------KTVKLWDVDTGKPKSSITHHGKKV--QTLEWHPYE-------PSVLLSGSYDGTVA 312 (463)
T ss_pred HHHhccccceeEEecCCC------ceEEEEEcCCCCcceehhhcCCce--eEEEecCCC-------ceEEEeccccceEE
Confidence 345554444 44455544 799999999999999999999987 456999862 47999999999999
Q ss_pred EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
+-|.|...+. +..|+..-.+-.++..+-. .++++..||++|-+|.+...++..++.+|.++|
T Consensus 313 l~D~R~~~~s----------------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 313 LKDCRDPSNS----------------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred eeeccCcccc----------------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence 9999953321 1122333345666776654 688899999999999887545778999999999
Q ss_pred EEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036 467 THVDVTYDGKWILG--TTDTYLILICTL 492 (634)
Q Consensus 467 tsVdfSpDGk~LlS--S~D~tIrLWD~~ 492 (634)
.+|++++.-..+++ +.|++|+||++.
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred ceEEecCCCCcceeeccccceEEEEeec
Confidence 99999999888776 889999999964
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.61 E-value=9.6e-14 Score=143.06 Aligned_cols=207 Identities=17% Similarity=0.189 Sum_probs=145.4
Q ss_pred CCCcEEEeeeCCCeEEEec---CeeeEEEccC------CceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecC
Q 047036 254 GGVQSLTLGALDNSFLVSD---LGLQVYRNYN------RGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSP 324 (634)
Q Consensus 254 ~~~~~LavG~~D~sfvv~G---~~igV~k~~~------~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss 324 (634)
|.+|.|-+---.+.|+++| .-|-||.... .|+--+. +++-+....+|..|.-..++++-=|.-|..+++
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~--~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH--KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe--eeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 4556665555556666655 3555665411 1211111 111111111455566566777777888888888
Q ss_pred CCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc
Q 047036 325 LKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK 404 (634)
Q Consensus 325 ~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g 404 (634)
-| +||++||..|-+.+..|+.... |..-+++|-. | ..-+||+|..|-.|++.|+.++.+ -.+|.|
T Consensus 122 FD------htlKVWDtnTlQ~a~~F~me~~---VYshamSp~a----~-sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsG 186 (397)
T KOG4283|consen 122 FD------HTLKVWDTNTLQEAVDFKMEGK---VYSHAMSPMA----M-SHCLIAAGTRDVQVRLCDIASGSF-SHTLSG 186 (397)
T ss_pred cc------ceEEEeecccceeeEEeecCce---eehhhcChhh----h-cceEEEEecCCCcEEEEeccCCcc-eeeecc
Confidence 86 7999999999999999987754 3455777742 1 135899999999999999998765 578888
Q ss_pred CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc-------------c-cccccccCCCCCeEE
Q 047036 405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM-------------R-QAKTAFPGLGSPITH 468 (634)
Q Consensus 405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~-------------r-~akt~L~GH~d~Its 468 (634)
|.+.| -+|..+|.. .||+||.||.|||||++.. + .+..+-++|.+.|.+
T Consensus 187 Hr~~v---------------laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng 251 (397)
T KOG4283|consen 187 HRDGV---------------LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG 251 (397)
T ss_pred ccCce---------------EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence 87654 466677766 4899999999999997531 0 011234479999999
Q ss_pred EEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 469 VDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 469 VdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
++|+.||++|++ +.|..+++|+..
T Consensus 252 la~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 252 LAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred eeecccchhhhhccCccceEEeecc
Confidence 999999999999 999999999975
No 92
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.61 E-value=5.2e-14 Score=143.47 Aligned_cols=160 Identities=16% Similarity=0.240 Sum_probs=123.2
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-----CCeE
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-----DNRL 387 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----D~tI 387 (634)
.+.+++.+++++.| .+++|||++|||++.+|+.... +..+.|+++ |++++...+ -+.|
T Consensus 60 id~~s~~liTGSAD------~t~kLWDv~tGk~la~~k~~~~---Vk~~~F~~~--------gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 60 IDWDSKHLITGSAD------QTAKLWDVETGKQLATWKTNSP---VKRVDFSFG--------GNLILASTDKQMGYTCFV 122 (327)
T ss_pred ecCCcceeeecccc------ceeEEEEcCCCcEEEEeecCCe---eEEEeeccC--------CcEEEEEehhhcCcceEE
Confidence 36778889999887 6999999999999999998753 456799997 555555443 4678
Q ss_pred EEEEcCCCC------ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc
Q 047036 388 CQWDMRDRS------GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP 460 (634)
Q Consensus 388 klWD~R~~~------~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~ 460 (634)
.+.|+|... .++..+.. ....++.+...+-+ +|++|..||.|+.||++++.+.+....
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t---------------~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPT---------------PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred EEEEccCChhhhcccCceEEecC---------------CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 999998421 12222221 12334566677777 899999999999999998765666677
Q ss_pred CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036 461 GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 461 GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
-|+..|+.|.||||..+.++ |.|++-+|||.. +-..+.+|.--.
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~----tl~v~Kty~te~ 232 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR----TLEVLKTYTTER 232 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeecc----ceeeEEEeeecc
Confidence 89999999999999999999 999999999986 566777777443
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=152.18 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=145.6
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
.+.++.++.| +++-+.|..+++++..|+||...| +-+.|+|+ ...++++|.|..|++|-.-...
T Consensus 231 ~~~ilTGG~d------~~av~~d~~s~q~l~~~~Gh~kki--~~v~~~~~--------~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 231 SSKILTGGED------KTAVLFDKPSNQILATLKGHTKKI--TSVKFHKD--------LDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCcceecCCC------CceEEEecchhhhhhhccCcceEE--EEEEeccc--------hhheeecCCcceEEeecccccc
Confidence 5678888876 689999999999999999999875 56699998 5789999999999999987655
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTY 473 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSp 473 (634)
+ .+.+..|..+| +.+...|.| ||+++|.||++-..|..+++ ..+... +-.-.+++..|+|
T Consensus 295 ~-~~~~~~h~~~V---------------~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~-~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 295 E-PTSSRPHEEPV---------------TGLSLHPTGEYLLSASNDGTWAFSDISSGS-QLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred C-ccccccccccc---------------eeeeeccCCcEEEEecCCceEEEEEccCCc-EEEEEeeccccceeEEeeEcC
Confidence 4 24444555554 444557788 99999999999999998875 333222 1223489999999
Q ss_pred CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE
Q 047036 474 DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL 552 (634)
Q Consensus 474 DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I 552 (634)
||..+.+ +.|+-|++||+. .+.....|-||.+.. ..+.|.-. | .++
T Consensus 358 DgLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~v------------------k~i~FsEN--------G---Y~L 404 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPV------------------KAISFSEN--------G---YWL 404 (506)
T ss_pred CceEEeccCCCceEEEEEcC----CccccccCCCCCCce------------------eEEEeccC--------c---eEE
Confidence 9999999 999999999986 455667788888632 34666544 4 688
Q ss_pred EEEc-CCeEEEEeChhhhc
Q 047036 553 VATV-GKFSVIWDFQQVKN 570 (634)
Q Consensus 553 vtSt-g~~viiWdl~~v~~ 570 (634)
++.+ |+-|++|||++.++
T Consensus 405 at~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 405 ATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred EEEecCCeEEEEEehhhcc
Confidence 7755 55599999998774
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=5.2e-15 Score=166.34 Aligned_cols=197 Identities=16% Similarity=0.202 Sum_probs=146.0
Q ss_pred cEEEeeeCCCeEEEecC-e------eeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036 257 QSLTLGALDNSFLVSDL-G------LQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGK 329 (634)
Q Consensus 257 ~~LavG~~D~sfvv~G~-~------igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~ 329 (634)
|.||++++.+.+++++- + +.||.-+.+- . +...| |.-+.++|++++.|
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs------~---------~~ldf-------h~tep~iliSGSQD--- 155 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS------A---------NKLDF-------HSTEPNILISGSQD--- 155 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccc------e---------eeeee-------ccCCccEEEecCCC---
Confidence 68999998888888762 2 2234333321 1 22223 33455678888765
Q ss_pred CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
++|++||+..-+-+.++.+....|+ -|.|+|-. +..++++.+.|.|.+||+|....+...+..|.++|
T Consensus 156 ---g~vK~~DlR~~~S~~t~~~nSESiR--DV~fsp~~-------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 156 ---GTVKCWDLRSKKSKSTFRSNSESIR--DVKFSPGY-------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred ---ceEEEEeeecccccccccccchhhh--ceeeccCC-------CceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 7999999999999999999998875 45999962 57899999999999999997655455677777664
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEEEc----C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILGTT----D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlSS~----D 483 (634)
.|+-.+|++ +||+||.|++|||||..+.+ ++..+. .-..||..|.|-|+-++.|++| |
T Consensus 224 ---------------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d 287 (839)
T KOG0269|consen 224 ---------------LCLNWHPNREWLATGGRDKMVKIWDMTDSR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD 287 (839)
T ss_pred ---------------EEEeecCCCceeeecCCCccEEEEeccCCC-ccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence 688889987 89999999999999998754 444332 2457999999999999988733 8
Q ss_pred CcEEEEEcccccCCCCeeeeecCCCC
Q 047036 484 TYLILICTLFSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~gF~gh~~ 509 (634)
..|++||++ ...-...+|.-|..
T Consensus 288 tsV~VWDvr---RPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 288 TSVHVWDVR---RPYIPYATFLEHTD 310 (839)
T ss_pred ceEEEEeec---cccccceeeeccCc
Confidence 999999987 23434455665543
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.59 E-value=3e-12 Score=127.79 Aligned_cols=139 Identities=16% Similarity=0.191 Sum_probs=98.0
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++|++||+.+|++++++..|... ..++|+|+ ++.++ +++.|++|++||+++.. .+..+..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~--------g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~~------- 113 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGPDP---ELFALHPN--------GKILYIANEDDNLVTVIDIETRK-VLAEIPV------- 113 (300)
T ss_pred CeEEEEECCCCcEEEeccCCCCc---cEEEECCC--------CCEEEEEcCCCCeEEEEECCCCe-EEeEeeC-------
Confidence 68999999999999988876553 34589998 45554 55678999999998754 3344321
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCC-cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDG-KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI 487 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DG-tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr 487 (634)
.....+++++|+| .|++++.++ .+++||..+++ ....+. .+..+.+++|+|||++|+. ..++.|+
T Consensus 114 ---------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 182 (300)
T TIGR03866 114 ---------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVS 182 (300)
T ss_pred ---------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEE
Confidence 1123567889999 678887765 57788987653 333332 2335688999999999865 3589999
Q ss_pred EEEcccccCCCCeeeeec
Q 047036 488 LICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~ 505 (634)
+||+. +++.+..+.
T Consensus 183 i~d~~----~~~~~~~~~ 196 (300)
T TIGR03866 183 VIDVA----TRKVIKKIT 196 (300)
T ss_pred EEEcC----cceeeeeee
Confidence 99985 455544443
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.58 E-value=6.2e-14 Score=162.35 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=117.7
Q ss_pred cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC---CCCcccccccccc-c
Q 047036 344 KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG---DSPVLHWTQGHQF-S 419 (634)
Q Consensus 344 K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh---~s~V~~~~~g~~y-~ 419 (634)
+.+.+..-|...|+ ++.|+|| |+++|+||+|+.|.+|.-.... .....|. ..-|-.|..-..+ .
T Consensus 60 k~l~~m~~h~~sv~--CVR~S~d--------G~~lAsGSDD~~v~iW~~~~~~--~~~~fgs~g~~~~vE~wk~~~~l~~ 127 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVN--CVRFSPD--------GSYLASGSDDRLVMIWERAEIG--SGTVFGSTGGAKNVESWKVVSILRG 127 (942)
T ss_pred hhheeeccccCcee--EEEECCC--------CCeEeeccCcceEEEeeecccC--CcccccccccccccceeeEEEEEec
Confidence 45667788999874 6699999 7899999999999999976200 0111100 0001111111011 1
Q ss_pred cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCC
Q 047036 420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKD 497 (634)
Q Consensus 420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~ 497 (634)
+...+.-++.+|++ +||++|.|++|-|||..+. .+.+.|.||...|.+|.|-|=|+|+|+ |.|++|++|.+. +
T Consensus 128 H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~----d 202 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS----D 202 (942)
T ss_pred CCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcc----c
Confidence 34456778889998 8999999999999999998 588899999999999999999999999 999999999964 3
Q ss_pred CCeeeeecCCCCCCCCCc--eeEeecCCCc
Q 047036 498 GKTKTGFSGRMGNKIPAP--RLLKLTPLDS 525 (634)
Q Consensus 498 G~~~~gF~gh~~~~~p~p--r~L~L~Pe~~ 525 (634)
=...+..++++.+..-.+ |||..+|...
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 334455666665443334 5555568654
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.8e-14 Score=149.45 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=117.8
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
+..++.++.| .|..+||++||.+|..|.||.... +-++-.|. ..++++.|.|-|.|+||.|..-
T Consensus 284 g~Q~vTaSWD------RTAnlwDVEtge~v~~LtGHd~EL--tHcstHpt--------QrLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 284 GQQMVTASWD------RTANLWDVETGEVVNILTGHDSEL--THCSTHPT--------QRLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred cceeeeeecc------ccceeeeeccCceeccccCcchhc--cccccCCc--------ceEEEEeccCceeEeccchhhc
Confidence 3456677776 699999999999999999999865 34466675 4689999999999999999654
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK 476 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk 476 (634)
..|..++||.+. ++++.|+-+..|++||.|.+||+||+++||.+..++. ...+|+.|++|.-+.
T Consensus 348 ~sV~VFQGHtdt---------------VTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 348 QSVAVFQGHTDT---------------VTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP 411 (481)
T ss_pred ceeeeecccccc---------------eeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence 445667776654 4677788888999999999999999999987777776 567999999999999
Q ss_pred EEEEEc-CCcEEEEEcc
Q 047036 477 WILGTT-DTYLILICTL 492 (634)
Q Consensus 477 ~LlSS~-D~tIrLWD~~ 492 (634)
.|+--. ...|||+|+.
T Consensus 412 iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 412 IIAIPHDNRQVRLFDLN 428 (481)
T ss_pred eEEeccCCceEEEEecC
Confidence 998854 5679999964
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.56 E-value=1.5e-13 Score=139.88 Aligned_cols=218 Identities=15% Similarity=0.209 Sum_probs=150.0
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD 384 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D 384 (634)
+...+..+.++..|.+++.| +++.+|.++.++.+.+ .+||.+.|. -+++.|.. ..++++++.|
T Consensus 22 ~v~Sv~wn~~g~~lasgs~d------ktv~v~n~e~~r~~~~~~~~gh~~svd--ql~w~~~~-------~d~~atas~d 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFD------KTVSVWNLERDRFRKELVYRGHTDSVD--QLCWDPKH-------PDLFATASGD 86 (313)
T ss_pred cceEEEEcccCceeeecccC------CceEEEEecchhhhhhhcccCCCcchh--hheeCCCC-------CcceEEecCC
Confidence 34445556777778888876 6999999999987776 478998875 44777751 5799999999
Q ss_pred CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc----------
Q 047036 385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---------- 453 (634)
Q Consensus 385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---------- 453 (634)
++|++||.|.++++ +.+.. ..-++.. +.+|+| ++|+|+.|..|-..|.++.+
T Consensus 87 k~ir~wd~r~~k~~-~~i~~---------------~~eni~i-~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e 149 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCT-ARIET---------------KGENINI-TWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE 149 (313)
T ss_pred ceEEEEEeccCcEE-EEeec---------------cCcceEE-EEcCCCCEEEEecCcccEEEEEecccceeehhcccce
Confidence 99999999998764 33310 1122332 345655 89999999999988876421
Q ss_pred ------------------------------cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036 454 ------------------------------QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 454 ------------------------------~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
+..+.|.+|..--.+|.|+|+|+|+|+ +.|-.+-|||+. .--|.+
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~----ELiC~R 225 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD----ELICER 225 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh----Hhhhhe
Confidence 133456788888899999999999999 999999999975 344555
Q ss_pred eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccC
Q 047036 503 GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQG 581 (634)
Q Consensus 503 gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~ 581 (634)
.|..+-- | ...++|+-+ | ++|++ |.|.||=|=+++ .|..
T Consensus 226 ~isRldw---p---------------VRTlSFS~d--------g---~~lASaSEDh~IDIA~ve---tGd~-------- 265 (313)
T KOG1407|consen 226 CISRLDW---P---------------VRTLSFSHD--------G---RMLASASEDHFIDIAEVE---TGDR-------- 265 (313)
T ss_pred eeccccC---c---------------eEEEEeccC--------c---ceeeccCccceEEeEecc---cCCe--------
Confidence 5553321 1 123555533 4 67776 678887666555 4543
Q ss_pred CcceeeEEEeccCCCeeeeccccCcc
Q 047036 582 LKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 582 ~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
+.+|+- +.....+.. |+|.
T Consensus 266 -----~~eI~~-~~~t~tVAW-HPk~ 284 (313)
T KOG1407|consen 266 -----VWEIPC-EGPTFTVAW-HPKR 284 (313)
T ss_pred -----EEEeec-cCCceeEEe-cCCC
Confidence 345554 334445566 7776
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.7e-13 Score=137.19 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=115.3
Q ss_pred eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC--CCeEE
Q 047036 311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD--DNRLC 388 (634)
Q Consensus 311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~--D~tIk 388 (634)
|-++.++..|++++.| .+|+|+|..+|+++++...++-+|. +++|... ...++.+|. |.+||
T Consensus 20 l~fs~~G~~litss~d------Dsl~LYd~~~g~~~~ti~skkyG~~--~~~Fth~--------~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 20 LDFSDDGLLLITSSED------DSLRLYDSLSGKQVKTINSKKYGVD--LACFTHH--------SNTVIHSSTKEDDTIR 83 (311)
T ss_pred EEecCCCCEEEEecCC------CeEEEEEcCCCceeeEeeccccccc--EEEEecC--------CceEEEccCCCCCceE
Confidence 3344555666776665 3899999999999999999988875 6688865 356777776 99999
Q ss_pred EEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036 389 QWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT 467 (634)
Q Consensus 389 lWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It 467 (634)
.-++-+.+ .|+.+.||... +.+++.+|.+ .+.|||.|++|||||++.. ++.-.|.-.+-|
T Consensus 84 yLsl~dNk-ylRYF~GH~~~---------------V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-~cqg~l~~~~~p-- 144 (311)
T KOG1446|consen 84 YLSLHDNK-YLRYFPGHKKR---------------VNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-KCQGLLNLSGRP-- 144 (311)
T ss_pred EEEeecCc-eEEEcCCCCce---------------EEEEEecCCCCeEEecccCCeEEeeEecCC-CCceEEecCCCc--
Confidence 99999865 57888888765 4677888877 8999999999999998864 355555544444
Q ss_pred EEEECCCCCEEEEEcCC-cEEEEEccc
Q 047036 468 HVDVTYDGKWILGTTDT-YLILICTLF 493 (634)
Q Consensus 468 sVdfSpDGk~LlSS~D~-tIrLWD~~~ 493 (634)
-++|.|.|-++|+++.+ .|+|+|++.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecc
Confidence 47899999999986655 999999884
No 100
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.56 E-value=2e-13 Score=151.34 Aligned_cols=204 Identities=12% Similarity=0.185 Sum_probs=130.5
Q ss_pred cEEEeeeCCCeEEEecCeeeEEEccCCcee----cceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGALDNSFLVSDLGLQVYRNYNRGIH----NKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~~D~sfvv~G~~igV~k~~~~gl~----~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
..|||+--|+-+.+-..+-.+|+.....+. -.+++..+. +.| + + .+|++.+.|
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~---------wap-g------e-~~lVsasGD------ 121 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK---------WAP-G------E-SLLVSASGD------ 121 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeec---------cCC-C------c-eeEEEccCC------
Confidence 489999888888888777777774333211 011222221 233 2 1 124444443
Q ss_pred CcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc------eEEeccc
Q 047036 333 PGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG------IVQNMVK 404 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~------~Vq~l~g 404 (634)
.|+|.||+++++++.. +.||...|. ..+|.|+. ...+++|+.|+.|.|||+|-... ..+...+
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~Svk--S~cf~~~n-------~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVK--SECFMPTN-------PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred ceeeeeeeccceeecceeecccccccc--hhhhccCC-------CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 6999999999999988 999999985 55999973 25899999999999999995420 0011223
Q ss_pred CCC---Ccccccc-cccc-ccCcc----eEEEEECCCCeEEEEEC-CCcEEEEecccccc-------ccccccCC---CC
Q 047036 405 GDS---PVLHWTQ-GHQF-SRGTN----FQCFASTGDGSIVVGSL-DGKIRLYSKTSMRQ-------AKTAFPGL---GS 464 (634)
Q Consensus 405 h~s---~V~~~~~-g~~y-~~~~~----fssva~s~dG~IASGS~-DGtIRLWD~~t~r~-------akt~L~GH---~d 464 (634)
|+. ++-.-.+ -+.+ +.... ++.+.|-++.+||++|. |++||+||++.... ....++-| .-
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 332 1100000 0001 11122 34566666669999888 99999999875321 11123344 34
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.+++|.+-.-|.||.+ ++|++|.+|++.
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 5788888889999998 779999999976
No 101
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.55 E-value=1.9e-13 Score=141.21 Aligned_cols=151 Identities=18% Similarity=0.310 Sum_probs=107.8
Q ss_pred CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCE
Q 047036 300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSES 377 (634)
Q Consensus 300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~ 377 (634)
+...+|+|. ...|+.+++-| ++||+|+++. |..+-+ ...|.+.| ++ ++|+.| |..
T Consensus 30 IS~l~FSP~-------~~~~~~A~SWD------~tVR~wevq~~g~~~~ka~~~~~~Pv-L~-v~Wsdd--------gsk 86 (347)
T KOG0647|consen 30 ISALAFSPQ-------ADNLLAAGSWD------GTVRIWEVQNSGQLVPKAQQSHDGPV-LD-VCWSDD--------GSK 86 (347)
T ss_pred hheeEeccc-------cCceEEecccC------CceEEEEEecCCcccchhhhccCCCe-EE-EEEccC--------Cce
Confidence 467789982 33566677776 7999999987 666543 45677776 35 499988 789
Q ss_pred EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc
Q 047036 378 TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA 455 (634)
Q Consensus 378 laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a 455 (634)
+|+|+-|+.+++||+.+++ ++.+..|..+|. +|..+.+.. .||+||.|.|||.||.+.. +.
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q--~~~v~~Hd~pvk--------------t~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~p 149 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQ--VSQVAAHDAPVK--------------TCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NP 149 (347)
T ss_pred EEeeccCCceEEEEccCCC--eeeeeeccccee--------------EEEEecCCCcceeEecccccceeecccCCC-Ce
Confidence 9999999999999999874 456667777652 334445444 5899999999999997653 23
Q ss_pred cccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 456 KTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 456 kt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
..++. +-+.++++++=.. -.++++.+..|.+++++
T Consensus 150 v~t~~-LPeRvYa~Dv~~p-m~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 150 VATLQ-LPERVYAADVLYP-MAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeee-ccceeeehhccCc-eeEEEecCCcEEEEEcC
Confidence 33332 4457777777655 12233778888888873
No 102
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.54 E-value=5.9e-14 Score=142.10 Aligned_cols=264 Identities=13% Similarity=0.103 Sum_probs=175.5
Q ss_pred ecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCC
Q 047036 294 FDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQL 372 (634)
Q Consensus 294 ~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~ 372 (634)
.+|| +|+--.+|+|.. +++-.|++.+.| +.=.|-.-+||.-|-+|.||++.| +..++..+
T Consensus 10 c~ghtrpvvdl~~s~it-----p~g~flisa~kd------~~pmlr~g~tgdwigtfeghkgav--w~~~l~~n------ 70 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPIT-----PDGYFLISASKD------GKPMLRNGDTGDWIGTFEGHKGAV--WSATLNKN------ 70 (334)
T ss_pred EcCCCcceeEEeccCCC-----CCceEEEEeccC------CCchhccCCCCCcEEeeeccCcce--eeeecCch------
Confidence 3455 344455666553 455566666655 334455678999999999999987 34355544
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036 373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t 451 (634)
....|||+.|-|.++||.-++.. +. .+.++.-+.+++|+.|. +|++|+.+..+|+||+..
T Consensus 71 --a~~aasaaadftakvw~a~tgde-lh----------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 71 --ATRAASAAADFTAKVWDAVTGDE-LH----------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred --hhhhhhhcccchhhhhhhhhhhh-hh----------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 34788999999999999988653 22 33455567899999998 899999999999999876
Q ss_pred cccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCC----CCCCCceeEeecCCCcc
Q 047036 452 MRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMG----NKIPAPRLLKLTPLDSH 526 (634)
Q Consensus 452 ~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~----~~~p~pr~L~L~Pe~~~ 526 (634)
.......+.||...|..+-|-..-+.||| +.|++|||||.+ +|..++.+.-... +..+.-|.|.+.-.-..
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----TGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec----cCcEEEEEecCCCCcceeeccCCCEEEEecCcee
Confidence 54344567899999999999999999999 889999999987 6777665542221 11122233333221110
Q ss_pred c------------cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccC
Q 047036 527 L------------AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKD 594 (634)
Q Consensus 527 ~------------~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~ 594 (634)
. +..+.+-..|...| +++.+++++.|.+++.+|+..- ..+. +| .+.+.
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P-----~k~~fVaGged~~~~kfDy~Tg--eEi~------------~~-nkgh~ 267 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHP-----KKEFFVAGGEDFKVYKFDYNTG--EEIG------------SY-NKGHF 267 (334)
T ss_pred EEeccccccceeeccCccccccccccC-----CCceEEecCcceEEEEEeccCC--ceee------------ec-ccCCC
Confidence 0 00112222332222 3466777788999999998731 1122 23 68899
Q ss_pred CCeeeeccccCcccc-CCCCCCCEEE
Q 047036 595 ESIVESRFMHDKFAV-TDSPEAPLVV 619 (634)
Q Consensus 595 ~~i~~~~f~~d~f~~-~~~~~~~iiv 619 (634)
+.|-+++|-.|--.+ +.|.|..|++
T Consensus 268 gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 268 GPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred CceEEEEECCCCceeeccCCCceEEE
Confidence 999999996665533 3345666664
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.54 E-value=1.4e-13 Score=148.03 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=137.1
Q ss_pred cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
..|+++. +|++|++.| ..|.||...+.. .+..|.+|. .+.-.+.+....+.|++++.|
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~e-----hv~~~~ghr-------~~V~~L~fr~gt~~lys~s~D------ 265 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLE-----HVKVFKGHR-------GAVSSLAFRKGTSELYSASAD------ 265 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccc-----hhhcccccc-------cceeeeeeecCccceeeeecC------
Confidence 4788887 899999975 688888865533 233456662 223334556666677777765
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
.+|++|+++.-..|.++-||.+.| +.+-+.+. ...+-.|..|+|+++|++-...++ .+.+|
T Consensus 266 rsvkvw~~~~~s~vetlyGHqd~v-~~IdaL~r---------eR~vtVGgrDrT~rlwKi~eesql--ifrg~------- 326 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVETLYGHQDGV-LGIDALSR---------ERCVTVGGRDRTVRLWKIPEESQL--IFRGG------- 326 (479)
T ss_pred CceEEEehhHhHHHHHHhCCccce-eeechhcc---------cceEEeccccceeEEEecccccee--eeeCC-------
Confidence 799999999888999999999987 34423332 345556669999999999543332 22222
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc-CCC-----------CCeEEEEECCCCCEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GLG-----------SPITHVDVTYDGKWILG 480 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH~-----------d~ItsVdfSpDGk~LlS 480 (634)
...+.|+|+-.+-++++||.+|.|-||++...+ +..+.+ +|+ .+|++|++.|.-..+++
T Consensus 327 --------~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~as 397 (479)
T KOG0299|consen 327 --------EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLAS 397 (479)
T ss_pred --------CCCeeeEEEecccceeeccCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEe
Confidence 224689999888899999999999999987653 332211 222 38999999999999999
Q ss_pred -EcCCcEEEEEcc
Q 047036 481 -TTDTYLILICTL 492 (634)
Q Consensus 481 -S~D~tIrLWD~~ 492 (634)
|++++||||-+.
T Consensus 398 GS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 398 GSWSGCVRLWKIE 410 (479)
T ss_pred cCCCCceEEEEec
Confidence 999999999875
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.8e-13 Score=149.71 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=118.0
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec-cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF-EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM 392 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg-H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~ 392 (634)
.++++.|..+..+ ++|.+||+++.+.++++.+ |...| .++++.. ..+.+|+.|+.|..+|+
T Consensus 226 s~~G~~LavG~~~------g~v~iwD~~~~k~~~~~~~~h~~rv--g~laW~~----------~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 226 SPDGSHLAVGTSD------GTVQIWDVKEQKKTRTLRGSHASRV--GSLAWNS----------SVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCCCCEEEEeecC------CeEEEEehhhccccccccCCcCcee--EEEeccC----------ceEEEecCCCcEEEEEE
Confidence 3444555666554 7999999999999999999 88764 5667773 58999999999999999
Q ss_pred CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEE
Q 047036 393 RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDV 471 (634)
Q Consensus 393 R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdf 471 (634)
|.....+.++.+|.. .++.+.+++++ ++|||+.|+.+.|||.... ..+.++..|...|..++|
T Consensus 288 R~~~~~~~~~~~H~q---------------eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~aw 351 (484)
T KOG0305|consen 288 RISQHVVSTLQGHRQ---------------EVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAW 351 (484)
T ss_pred ecchhhhhhhhcccc---------------eeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeee
Confidence 987665555655544 35678889999 8999999999999998664 477888999999999999
Q ss_pred CCCCCEEEE----EcCCcEEEEEcc
Q 047036 472 TYDGKWILG----TTDTYLILICTL 492 (634)
Q Consensus 472 SpDGk~LlS----S~D~tIrLWD~~ 492 (634)
+|=-+-||| +.|.+|++||+.
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcC
Confidence 997665554 569999999986
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=1.5e-13 Score=147.85 Aligned_cols=187 Identities=15% Similarity=0.175 Sum_probs=138.3
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEE----EE--------------EeccCCCcceeEEEEecCCCCCCCCCC
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV----TE--------------WKFEKDGTDITMRDITNDTKSSQLDPS 375 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V----~~--------------lkgH~~~V~I~vvsfsPd~K~~q~~~g 375 (634)
..+.+.+++++.+ ++|-.|++.+|+.+ .+ +++|...+ ++ ++++|| +
T Consensus 151 s~d~~~~fsask~------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei-l~-~avS~D--------g 214 (479)
T KOG0299|consen 151 SPDDKRVFSASKD------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI-LT-LAVSSD--------G 214 (479)
T ss_pred eccccceeecCCC------cceeeeehhcCcccccccccchhhhhccCCCCccccccccee-EE-EEEcCC--------C
Confidence 3444556666554 69999999999944 22 13777764 45 499999 6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc
Q 047036 376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ 454 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ 454 (634)
.+||+|..|+-|.+||+++.. .++.+.+|.+.| .++||-.+. .++|+|.|++|++|++..+ .
T Consensus 215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V---------------~~L~fr~gt~~lys~s~Drsvkvw~~~~~-s 277 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAV---------------SSLAFRKGTSELYSASADRSVKVWSIDQL-S 277 (479)
T ss_pred cEEEecCCCceEEEecCcccc-hhhcccccccce---------------eeeeeecCccceeeeecCCceEEEehhHh-H
Confidence 789999999999999999975 468888887654 677886655 7999999999999998775 3
Q ss_pred ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
...+|-||.+.|.+|+...-++.+-. +.|.|+|||++. -.....|.+|-+ +
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~-----------------------s 329 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEG-----------------------S 329 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEecc-----ccceeeeeCCCC-----------------------C
Confidence 66788899999999999999997766 699999999973 122234555532 2
Q ss_pred cccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036 534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
+.-++|- +++-++.+|.++.|.+|++-+
T Consensus 330 idcv~~I------n~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 330 IDCVAFI------NDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred eeeEEEe------cccceeeccCCceEEEeeecc
Confidence 2233332 123455557788899999864
No 106
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.53 E-value=4e-13 Score=152.26 Aligned_cols=231 Identities=15% Similarity=0.166 Sum_probs=153.9
Q ss_pred CcEEEeeeCCCeEEEe---cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 256 VQSLTLGALDNSFLVS---DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 256 ~~~LavG~~D~sfvv~---G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
.|.++.-.++.+.-++ -+++|-|...+.. ++. +.. ...+++.+ .=+|..+.|.+.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~--~~~----~~~--~~~av~vs--------~CGNF~~IG~S~------ 469 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR--FKK----DDI--NATAVCVS--------FCGNFVFIGYSK------ 469 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCcc--ccc----cCc--ceEEEEEe--------ccCceEEEeccC------
Confidence 4566666666655554 3566666654431 110 000 00233333 334556665554
Q ss_pred CcEEEEeCCCCcEEEEE---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEW---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
++|-++++++|-...+| ..|+..| ..++-|+- ++.++|++.+|-+++||...+. ++..+.
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V----~gla~D~~------n~~~vsa~~~Gilkfw~f~~k~-l~~~l~------ 532 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEV----TGLAVDGT------NRLLVSAGADGILKFWDFKKKV-LKKSLR------ 532 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCce----eEEEecCC------CceEEEccCcceEEEEecCCcc-eeeeec------
Confidence 68999999999999999 5899865 34555522 5789999999999999997543 233331
Q ss_pred cccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
.+....++.... .+.+|.+..|-.|+++|..+. +..+.|.||++.|+.++|||||+||++ ++|++||
T Consensus 533 ----------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr 601 (910)
T KOG1539|consen 533 ----------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR 601 (910)
T ss_pred ----------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence 122233333333 347899999999999999985 478899999999999999999999999 9999999
Q ss_pred EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcC-CeEEEEeC
Q 047036 488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVG-KFSVIWDF 565 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg-~~viiWdl 565 (634)
+||+. +|.++-+|. +. . | -..++|+|. | .+++| ..| ..|++|.=
T Consensus 602 ~wDlp----t~~lID~~~--vd-~-~---------------~~sls~SPn--------g---D~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 602 TWDLP----TGTLIDGLL--VD-S-P---------------CTSLSFSPN--------G---DFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EEecc----CcceeeeEe--cC-C-c---------------ceeeEECCC--------C---CEEEEEEecCceEEEEEc
Confidence 99985 677665443 11 1 1 023556555 4 35655 445 89999976
Q ss_pred hhhhc
Q 047036 566 QQVKN 570 (634)
Q Consensus 566 ~~v~~ 570 (634)
+...+
T Consensus 648 kslF~ 652 (910)
T KOG1539|consen 648 KSLFK 652 (910)
T ss_pred hhHhe
Confidence 54443
No 107
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.52 E-value=3.3e-13 Score=139.18 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=137.9
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCc------------E-E--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGK------------I-V--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK------------~-V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
-+++++|+++.| +.|-+||++.-. | | +-=.+|+-.| ..+.+-|- + ...+.
T Consensus 54 tegrymlSGgad------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~i--ss~~WyP~------D-tGmFt 118 (397)
T KOG4283|consen 54 TEGRYMLSGGAD------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAI--SSAIWYPI------D-TGMFT 118 (397)
T ss_pred ccceEEeecCCC------ccEEEEEeccccchhhccceeheeeeccccCCccceeee--eeeEEeee------c-Cceee
Confidence 356778888886 689999997643 1 1 1124676664 34456563 1 24888
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
|+|.|.++|+||..+-+.. -.+. -.++-|.+ ..+.+|.+ --.||+|-.|-.|||-|+.++ ....+|
T Consensus 119 ssSFDhtlKVWDtnTlQ~a-~~F~---------me~~VYsh--amSp~a~s-HcLiA~gtr~~~VrLCDi~SG-s~sH~L 184 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEA-VDFK---------MEGKVYSH--AMSPMAMS-HCLIAAGTRDVQVRLCDIASG-SFSHTL 184 (397)
T ss_pred cccccceEEEeecccceee-EEee---------cCceeehh--hcChhhhc-ceEEEEecCCCcEEEEeccCC-cceeee
Confidence 9999999999999875432 2221 02333322 11222221 116999999999999999998 478899
Q ss_pred cCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036 460 PGLGSPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG 537 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a 537 (634)
.||.+.|.+|.+||--.|||+ ++|+.|||||++ .--.|...+.-|.+.+.| .|+-.|.|. -.|...
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiR---rasgcf~~lD~hn~k~~p---~~~~n~ah~------gkvngl 252 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIR---RASGCFRVLDQHNTKRPP---ILKTNTAHY------GKVNGL 252 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEee---cccceeEEeecccCccCc---ccccccccc------ceeeee
Confidence 999999999999999999987 899999999997 333456667777653322 344334332 244455
Q ss_pred cccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036 538 HFSWVTENGKQERHLV-ATVGKFSVIWDFQQ 567 (634)
Q Consensus 538 ~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~ 567 (634)
+|+. +| ..+. .++|.-+.+||..+
T Consensus 253 a~tS---d~---~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 253 AWTS---DA---RYLASCGTDDRIRVWNMES 277 (397)
T ss_pred eecc---cc---hhhhhccCccceEEeeccc
Confidence 5542 13 3444 47899999999874
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.6e-13 Score=139.03 Aligned_cols=207 Identities=14% Similarity=0.205 Sum_probs=147.4
Q ss_pred CCcEEEeeeCCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGALDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
....||| ++.|+++| .+|.+|.+..+- .+..+..| ..++...|.|.-. .+-||+++.|
T Consensus 45 sitavAV---s~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S------~shLlS~sdD---- 106 (362)
T KOG0294|consen 45 SITALAV---SGPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLS------KSHLLSGSDD---- 106 (362)
T ss_pred ceeEEEe---cceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcc------hhheeeecCC----
Confidence 3445555 57789987 589999975542 11122223 1224555554431 1246777665
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPV 409 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V 409 (634)
+.|.+||+..-+++.++++|+..|+ -++++|. +.+.++-+.|+.+++||+-.++ ..+..|. |....
T Consensus 107 --G~i~iw~~~~W~~~~slK~H~~~Vt--~lsiHPS--------~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~ 173 (362)
T KOG0294|consen 107 --GHIIIWRVGSWELLKSLKAHKGQVT--DLSIHPS--------GKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATL 173 (362)
T ss_pred --CcEEEEEcCCeEEeeeecccccccc--eeEecCC--------CceEEEEcCCceeeeehhhcCccceeeccC-Cccee
Confidence 7999999999999999999999874 5699998 5577888999999999976553 2333443 22222
Q ss_pred cccc-ccccccc--------------------Cc--ceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 410 LHWT-QGHQFSR--------------------GT--NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 410 ~~~~-~g~~y~~--------------------~~--~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
+.|. +|..|+. .+ ...|+.|-..+.|++|..|+.|++||.... .+.+.|.+|...|
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RV 252 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRV 252 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC-ccceeeecchhhe
Confidence 3444 4443321 11 256666666679999999999999998765 4778899999999
Q ss_pred EEEEE--CCCCCEEEE-EcCCcEEEEEccc
Q 047036 467 THVDV--TYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 467 tsVdf--SpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
.+|.+ .|++.||++ |.|+.|++||+.+
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 99983 488999999 9999999999864
No 109
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.9e-13 Score=149.62 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=134.9
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEeccc-CCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVK-GDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~g-h~s~V~~ 411 (634)
..||+|+..+|++..-...+.+.| +.|.++|+ |.+|+.|..+++|.|||....++ +.++.+ |..
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~v--tSv~ws~~--------G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~h~~---- 261 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELV--TSVKWSPD--------GSHLAVGTSDGTVQIWDVKEQKK-TRTLRGSHAS---- 261 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCce--EEEEECCC--------CCEEEEeecCCeEEEEehhhccc-cccccCCcCc----
Confidence 369999999999888888877765 67799998 78999999999999999876543 456654 333
Q ss_pred cccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
.+.|++.. ...+.+|+.||.|..+|++..+....++.+|...|-++.+++||+++|| +.|+.+.|||
T Consensus 262 -----------rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 262 -----------RVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred -----------eeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 35677776 4478999999999999988754333458899999999999999999999 9999999999
Q ss_pred cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE---EcCCeEEEEeChh
Q 047036 491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA---TVGKFSVIWDFQQ 567 (634)
Q Consensus 491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt---Stg~~viiWdl~~ 567 (634)
.. .-..+..|..|.+.. +.+.|+|=.- | .|++ +.|+.|.+||...
T Consensus 330 ~~----~~~p~~~~~~H~aAV------------------KA~awcP~q~------~----lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 330 GL----SPEPKFTFTEHTAAV------------------KALAWCPWQS------G----LLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred CC----CccccEEEeccceee------------------eEeeeCCCcc------C----ceEEcCCCcccEEEEEEcCC
Confidence 73 344566677777533 3355555421 1 3444 4578888888764
Q ss_pred h
Q 047036 568 V 568 (634)
Q Consensus 568 v 568 (634)
.
T Consensus 378 g 378 (484)
T KOG0305|consen 378 G 378 (484)
T ss_pred C
Confidence 3
No 110
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.51 E-value=3e-13 Score=146.68 Aligned_cols=148 Identities=20% Similarity=0.332 Sum_probs=125.1
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ 389 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl 389 (634)
++.++.|.++.+++-+| +.|++||+..-.+|+.|+||.+++. +..+++| |..|-||+-|++||.
T Consensus 514 ALa~spDakvcFsccsd------GnI~vwDLhnq~~VrqfqGhtDGas--cIdis~d--------GtklWTGGlDntvRc 577 (705)
T KOG0639|consen 514 ALAISPDAKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTDGAS--CIDISKD--------GTKLWTGGLDNTVRC 577 (705)
T ss_pred hhhcCCccceeeeeccC------CcEEEEEcccceeeecccCCCCCce--eEEecCC--------CceeecCCCccceee
Confidence 46678888888988886 6899999999999999999999984 5599998 789999999999999
Q ss_pred EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEE
Q 047036 390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITH 468 (634)
Q Consensus 390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~Its 468 (634)
||+|.++++ . .|+|. .++.++...|.| .||+|-..+.+-|-.... ..+..|.-|...|.+
T Consensus 578 WDlregrql----q-----------qhdF~--SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLS 638 (705)
T KOG0639|consen 578 WDLREGRQL----Q-----------QHDFS--SQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLS 638 (705)
T ss_pred hhhhhhhhh----h-----------hhhhh--hhheecccCCCccceeeecccCcEEEEecCC--ccceeecccccEEEE
Confidence 999987653 1 23443 245566667887 899999999998877654 367888889999999
Q ss_pred EEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 469 VDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 469 VdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
|.|++-|+|.+| +.|+.|-.|.+-
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred EEecccCceeeecCchhhhhhccCc
Confidence 999999999999 999999999864
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=145.31 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=120.3
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
|.+++..+.++..|+++.-. +.||+|-+.||+++..|.+|-..| +++.|+.| |..++|||.|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~------g~lYlWelssG~LL~v~~aHYQ~I--TcL~fs~d--------gs~iiTgskDg~ 146 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTIS------GNLYLWELSSGILLNVLSAHYQSI--TCLKFSDD--------GSHIITGSKDGA 146 (476)
T ss_pred ceeeeecCCCceEEEeeccc------CcEEEEEeccccHHHHHHhhccce--eEEEEeCC--------CcEEEecCCCcc
Confidence 47788888888888888543 579999999999999999999975 67799988 789999999999
Q ss_pred EEEEEcCCCCceEEecccCCC-CccccccccccccCcceEEEEECCC---CeEEEEECCCcEEEEeccccccccccccCC
Q 047036 387 LCQWDMRDRSGIVQNMVKGDS-PVLHWTQGHQFSRGTNFQCFASTGD---GSIVVGSLDGKIRLYSKTSMRQAKTAFPGL 462 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s-~V~~~~~g~~y~~~~~fssva~s~d---G~IASGS~DGtIRLWD~~t~r~akt~L~GH 462 (634)
|++|++-. +|.....|+- |.-.|+. +...++.+-...+ ++|+++|.|.+|||||+..+. ...++. .
T Consensus 147 V~vW~l~~---lv~a~~~~~~~p~~~f~~-----HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~-f 216 (476)
T KOG0646|consen 147 VLVWLLTD---LVSADNDHSVKPLHIFSD-----HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTIT-F 216 (476)
T ss_pred EEEEEEEe---ecccccCCCccceeeecc-----CcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEe-c
Confidence 99999742 2222222211 2111221 2334555555544 489999999999999998874 443332 3
Q ss_pred CCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 463 GSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 463 ~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
-.+|.+|++.|-++.+.. +.++.|-+.+..
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 468999999999999999 899999888754
No 112
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=6.5e-13 Score=141.55 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=114.8
Q ss_pred cccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 303 SNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 303 ~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
..|+|.+. .|.+++.| .|.-+|++-.- +++.++.||...| +. +.|||| .++++
T Consensus 230 l~FS~nGk--------yLAsaSkD------~Taiiw~v~~d~~~kl~~tlvgh~~~V-~y-i~wSPD--------dryLl 285 (519)
T KOG0293|consen 230 LQFSHNGK--------YLASASKD------STAIIWIVVYDVHFKLKKTLVGHSQPV-SY-IMWSPD--------DRYLL 285 (519)
T ss_pred EEEcCCCe--------eEeeccCC------ceEEEEEEecCcceeeeeeeecccCce-EE-EEECCC--------CCeEE
Confidence 34666654 44455554 69999987543 4688999999998 35 499999 68999
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA 458 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~ 458 (634)
+|+.|..+.+||+.++.+ +..+. .+ ....++|+|.-||| ++++||-|++|..||..+ + .+..
T Consensus 286 aCg~~e~~~lwDv~tgd~-~~~y~----------~~----~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n-~~~~ 348 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDL-RHLYP----------SG----LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-N-ILGN 348 (519)
T ss_pred ecCchHheeeccCCcchh-hhhcc----------cC----cCCCcceeEEccCCceeEecCCCCcEEEecCCc-c-hhhc
Confidence 999999999999998754 22221 11 12446788899999 799999999999999876 3 5555
Q ss_pred ccCCCCC-eEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 459 FPGLGSP-ITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 459 L~GH~d~-ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
-.|-..| |..|++++||+|+++ +.|..|+|++..
T Consensus 349 W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e 384 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNRE 384 (519)
T ss_pred ccccccceeEEEEEcCCCcEEEEEecccceeeechh
Confidence 5555544 899999999999999 999999999854
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.51 E-value=1.2e-12 Score=142.60 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=110.4
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSE 376 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~ 376 (634)
+...|.|.. ....|+++.| +|+|+||++.-| ++.+--.....|++++++|+|| +.
T Consensus 272 t~g~whP~~-------k~~FlT~s~D------gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd--------g~ 330 (641)
T KOG0772|consen 272 TCGCWHPDN-------KEEFLTCSYD------GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD--------GK 330 (641)
T ss_pred eccccccCc-------ccceEEecCC------CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC--------cc
Confidence 444566664 2346677665 799999997653 3332222334556678899999 56
Q ss_pred EEEEEeCCCeEEEEEcCCCCc-eEEec-ccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036 377 STFLGLDDNRLCQWDMRDRSG-IVQNM-VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~~-~Vq~l-~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r 453 (634)
.||.|+.|++|.+||.+.... ++..+ ..|. ....++|++||.+| +|+|=|.|+++||||++..+
T Consensus 331 ~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~-------------~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 331 LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL-------------PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred hhhhcccCCceeeeecCCcccccceEeeeccC-------------CCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 899999999999999875421 11111 1222 23468999999999 89999999999999998766
Q ss_pred cccccccCCC--CCeEEEEECCCCCEEEE-Ec------CCcEEEEEcc
Q 047036 454 QAKTAFPGLG--SPITHVDVTYDGKWILG-TT------DTYLILICTL 492 (634)
Q Consensus 454 ~akt~L~GH~--d~ItsVdfSpDGk~LlS-S~------D~tIrLWD~~ 492 (634)
+++....|+- -+-+.++||||-+.|++ +. -++|.++|..
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 5555444543 34578999999999998 32 2557777754
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.51 E-value=2.7e-12 Score=128.12 Aligned_cols=139 Identities=13% Similarity=0.202 Sum_probs=99.4
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCC
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~ 396 (634)
+++++++.| ++|++||+.+|+++..+.+|.. + ..++|+|+ +..+ ++++.+++|++||++++.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~--~~l~~~~d--------g~~l~~~~~~~~~v~~~d~~~~~ 64 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-P--RGITLSKD--------GKLLYVCASDSDTIQVIDLATGE 64 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCCC-C--CceEECCC--------CCEEEEEECCCCeEEEEECCCCc
Confidence 345566554 6999999999999999998765 3 23589998 4555 677889999999998754
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEE-EEECCCcEEEEeccccccccccccCCCCCeEEEEECCC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD 474 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD 474 (634)
.+..+..+. ....++++++| .|+ +++.|+.|++||+.+.+ ....++ ++..+.+++|+||
T Consensus 65 -~~~~~~~~~----------------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~d 125 (300)
T TIGR03866 65 -VIGTLPSGP----------------DPELFALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPD 125 (300)
T ss_pred -EEEeccCCC----------------CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCC
Confidence 334443111 12456788888 564 45678999999988753 455555 3345789999999
Q ss_pred CCEEEE-EcC-CcEEEEEcc
Q 047036 475 GKWILG-TTD-TYLILICTL 492 (634)
Q Consensus 475 Gk~LlS-S~D-~tIrLWD~~ 492 (634)
|++|++ +.+ ..+++||..
T Consensus 126 g~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC
Confidence 999998 554 356677864
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.50 E-value=1.8e-13 Score=145.82 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=113.4
Q ss_pred EEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE
Q 047036 320 MLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV 399 (634)
Q Consensus 320 llsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V 399 (634)
++++..| ++||.||+.++.++++..+|.. |+.++++++ +..|.+++.|+++.+.|+|+.+ ++
T Consensus 315 ~~SgH~D------kkvRfwD~Rs~~~~~sv~~gg~---vtSl~ls~~--------g~~lLsssRDdtl~viDlRt~e-I~ 376 (459)
T KOG0288|consen 315 VISGHFD------KKVRFWDIRSADKTRSVPLGGR---VTSLDLSMD--------GLELLSSSRDDTLKVIDLRTKE-IR 376 (459)
T ss_pred eeecccc------cceEEEeccCCceeeEeecCcc---eeeEeeccC--------CeEEeeecCCCceeeeeccccc-EE
Confidence 4455554 6899999999999999999873 467799988 6788888999999999999864 45
Q ss_pred EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC--CeEEEEECCCCC
Q 047036 400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS--PITHVDVTYDGK 476 (634)
Q Consensus 400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d--~ItsVdfSpDGk 476 (634)
+++.. ..|....+++.++|||+| |+|+||.||.|+||++.+++ +...+..-+. .|++++|+|-|+
T Consensus 377 ~~~sA-----------~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 377 QTFSA-----------EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred EEeec-----------cccccccccceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCc
Confidence 66531 123344457889999999 99999999999999999875 5555554333 599999999999
Q ss_pred EEEE-EcCCcEEEE
Q 047036 477 WILG-TTDTYLILI 489 (634)
Q Consensus 477 ~LlS-S~D~tIrLW 489 (634)
+||+ +.+.++.||
T Consensus 445 ~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 445 GLLSADKQKAVTLW 458 (459)
T ss_pred hhhcccCCcceEec
Confidence 9999 899999999
No 116
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.8e-12 Score=134.89 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=150.3
Q ss_pred cEEEeee-CCC-eEEE---ecCeeeEEEcc--CCc-eecceeEEEecCC-CC-CcccccCcceeeEEeCCcceEEecCCC
Q 047036 257 QSLTLGA-LDN-SFLV---SDLGLQVYRNY--NRG-IHNKGVSVRFDGG-SS-KIGSNSTPKKALLMRGETNMMLMSPLK 326 (634)
Q Consensus 257 ~~LavG~-~D~-sfvv---~G~~igV~k~~--~~g-l~~~~~~~~~~~~-~~-~~g~~fsP~~~mL~~~D~~mllsss~d 326 (634)
..-+|.| +|. +||| +|+++.||+.. .+| ..++. +....| .+ ++.+ |.--+=..+.+..|++++.|
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~--v~~D~~~f~~kh~v---~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHF--VHIDNLEFERKHQV---DIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccc--ccccccccchhccc---ceEEEeecCCceEEEEecCC
Confidence 3456666 655 6666 58999999972 222 11110 011100 00 0111 11111123455667777765
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-----c--eE
Q 047036 327 DGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-----G--IV 399 (634)
Q Consensus 327 ~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-----~--~V 399 (634)
.+|-|||+. |+++.......-.- ...++||+ |+.|++++.---|++|.+--.+ . .|
T Consensus 209 ------t~i~lw~lk-Gq~L~~idtnq~~n--~~aavSP~--------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 209 ------TKICLWDLK-GQLLQSIDTNQSSN--YDAAVSPD--------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ------CcEEEEecC-Cceeeeeccccccc--cceeeCCC--------CcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 689999999 99999987655432 45589999 6789999999999999975321 1 12
Q ss_pred EecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---c-ccc------cccCCCCCeEE
Q 047036 400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---Q-AKT------AFPGLGSPITH 468 (634)
Q Consensus 400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---~-akt------~L~GH~d~Its 468 (634)
-.|.||.+. +.++||+++. ++++.|.||++||||..-.. + .+. .|..-+..-..
T Consensus 272 f~LkGH~sa---------------V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R 336 (420)
T KOG2096|consen 272 FSLKGHQSA---------------VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR 336 (420)
T ss_pred heeccchhh---------------eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE
Confidence 345566554 4678999998 89999999999999975310 0 111 11122333348
Q ss_pred EEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc-CCCcccccccccccccCCC
Q 047036 469 VDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA-GTDNKIHGGHFSWVTENGK 547 (634)
Q Consensus 469 VdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~-g~~i~Ft~a~Fs~~t~~g~ 547 (634)
|.+||.|+.||.+.-.+|.++..+ +|+-.-.|+. +|.. ...++|.+. |
T Consensus 337 L~lsP~g~~lA~s~gs~l~~~~se----~g~~~~~~e~------------------~h~~~Is~is~~~~--------g- 385 (420)
T KOG2096|consen 337 LELSPSGDSLAVSFGSDLKVFASE----DGKDYPELED------------------IHSTTISSISYSSD--------G- 385 (420)
T ss_pred EEeCCCCcEEEeecCCceEEEEcc----cCccchhHHH------------------hhcCceeeEEecCC--------C-
Confidence 999999999999999999999976 4543333331 1110 123555544 4
Q ss_pred CceEEEEEcCCeEEEEe
Q 047036 548 QERHLVATVGKFSVIWD 564 (634)
Q Consensus 548 ~E~~IvtStg~~viiWd 564 (634)
+.|+|+.|+++.+.-
T Consensus 386 --~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 386 --KYIATCGDRYVRVIR 400 (420)
T ss_pred --cEEeeecceeeeeec
Confidence 799999999998753
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.50 E-value=7.2e-13 Score=142.60 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=135.9
Q ss_pred CcEEEeee-C--CCeEEEecC---eeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036 256 VQSLTLGA-L--DNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDG 328 (634)
Q Consensus 256 ~~~LavG~-~--D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~ 328 (634)
...-++++ + .++.|+.|+ .||+|.....+ .....+.-|..| .++.+..|+|.. .++|++++.|
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n-------~s~i~ssSyD-- 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPAN-------TSQIYSSSYD-- 256 (498)
T ss_pred cceEEEEecccCcceEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCC-------hhheeeeccC--
Confidence 45667777 3 557888775 68888863211 111123334444 345666677654 4678888886
Q ss_pred CCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036 329 KPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 329 ~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
+|||+.|++++..-.-+.-.++..-++..+|+.+ ...++.|..=+-.-+||.|+.+.....+.-
T Consensus 257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e--------~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l---- 320 (498)
T KOG4328|consen 257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE--------SRSVLFGDNVGNFNVIDLRTDGSEYENLRL---- 320 (498)
T ss_pred ----ceeeeeeecchhhHHHhhcCccceeeeeccccCC--------CccEEEeecccceEEEEeecCCccchhhhh----
Confidence 7999999997753322333233333455566665 346666666669999999997642222211
Q ss_pred ccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccccc----ccCCCCCeEEEEECCCCCEEEE-E
Q 047036 409 VLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTA----FPGLGSPITHVDVTYDGKWILG-T 481 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~----L~GH~d~ItsVdfSpDGk~LlS-S 481 (634)
++..+.+++++|-. +||+||.|++.||||++.++ .|.. ...|.-+|.+..|||+|-.||+ +
T Consensus 321 -----------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~ 388 (498)
T KOG4328|consen 321 -----------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC 388 (498)
T ss_pred -----------hhcccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeeeEEcCCCCceEeec
Confidence 23367889999865 79999999999999988764 4442 2369999999999999988999 7
Q ss_pred cCCcEEEEEcc
Q 047036 482 TDTYLILICTL 492 (634)
Q Consensus 482 ~D~tIrLWD~~ 492 (634)
.|++|||||..
T Consensus 389 ~D~~IRv~dss 399 (498)
T KOG4328|consen 389 QDNEIRVFDSS 399 (498)
T ss_pred cCCceEEeecc
Confidence 79999999963
No 118
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=5.8e-13 Score=149.68 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=123.9
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
-.+.++|++.+| ..+=-| .||+++=+.|=|..-+|-||+-.| +++ ++||| +.+++|
T Consensus 512 L~v~~Spdgk~L--------aVsLLd------nTVkVyflDtlKFflsLYGHkLPV-~sm-DIS~D--------SklivT 567 (888)
T KOG0306|consen 512 LCVSVSPDGKLL--------AVSLLD------NTVKVYFLDTLKFFLSLYGHKLPV-LSM-DISPD--------SKLIVT 567 (888)
T ss_pred EEEEEcCCCcEE--------EEEecc------CeEEEEEecceeeeeeecccccce-eEE-eccCC--------cCeEEe
Confidence 455666766544 444443 689999999999999999999987 354 99999 569999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
||.|++|++|-+.=+.| -+.+.+|.+.| .+|-|-|.. .+.++|.|+.||-||..... ...+|
T Consensus 568 gSADKnVKiWGLdFGDC-HKS~fAHdDSv---------------m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L 630 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFGDC-HKSFFAHDDSV---------------MSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKL 630 (888)
T ss_pred ccCCCceEEeccccchh-hhhhhcccCce---------------eEEEEcccceeEEEecCcceEEeechhhhh-hheee
Confidence 99999999999887665 46676666543 567777776 68999999999999987763 77899
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
+||...|++++++|+|.+++| |.|.+||||.-
T Consensus 631 ~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 631 DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred ccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 999999999999999999999 99999999963
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.7e-12 Score=134.39 Aligned_cols=216 Identities=16% Similarity=0.244 Sum_probs=144.1
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG 397 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~ 397 (634)
+.||.++.| ++|+++|+..-....+|+ |...+ --++|.++ ..+++|+-|+.|++.|+.++..
T Consensus 26 ~~LLvssWD------gslrlYdv~~~~l~~~~~-~~~pl--L~c~F~d~---------~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 26 SDLLVSSWD------GSLRLYDVPANSLKLKFK-HGAPL--LDCAFADE---------STIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred CcEEEEecc------CcEEEEeccchhhhhhee-cCCce--eeeeccCC---------ceEEEeccCceEEEEEecCCcc
Confidence 455666665 799999999877766776 44443 34588875 5899999999999999998753
Q ss_pred eEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036 398 IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK 476 (634)
Q Consensus 398 ~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk 476 (634)
..+..|.. .++|+...+ .|.|++||.|++|++||.+.. ....++. -+..|.+++++-+ +
T Consensus 88 --~~igth~~---------------~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-~~~~~~d-~~kkVy~~~v~g~-~ 147 (323)
T KOG1036|consen 88 --DQIGTHDE---------------GIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-VVVGTFD-QGKKVYCMDVSGN-R 147 (323)
T ss_pred --eeeccCCC---------------ceEEEEeeccCCeEEEcccCccEEEEecccc-ccccccc-cCceEEEEeccCC-E
Confidence 33444443 357888875 468999999999999997642 2233333 3448999998755 4
Q ss_pred EEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcc------------------------------
Q 047036 477 WILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSH------------------------------ 526 (634)
Q Consensus 477 ~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~------------------------------ 526 (634)
.|+.+.|..+.+||++..+ .-|+.+...-|=+.|++++.|...-
T Consensus 148 LvVg~~~r~v~iyDLRn~~------~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLD------EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred EEEeecCceEEEEEccccc------chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 4445999999999987321 1232222222455677777773210
Q ss_pred -----------ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccC
Q 047036 527 -----------LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKD 594 (634)
Q Consensus 527 -----------~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~ 594 (634)
+..+.+.|+|. - .+++| +.|++|.+||+..-++ + +++.+|+
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~-----~------~tfaTgGsDG~V~~Wd~~~rKr--l--------------~q~~~~~ 274 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPI-----H------GTFATGGSDGIVNIWDLFNRKR--L--------------KQLAKYE 274 (323)
T ss_pred eecccCCceEEEEeceeEeccc-----c------ceEEecCCCceEEEccCcchhh--h--------------hhccCCC
Confidence 01122344444 1 24445 7899999999874332 1 4789998
Q ss_pred CCeeeecccc
Q 047036 595 ESIVESRFMH 604 (634)
Q Consensus 595 ~~i~~~~f~~ 604 (634)
.+|....|-+
T Consensus 275 ~SI~slsfs~ 284 (323)
T KOG1036|consen 275 TSISSLSFSM 284 (323)
T ss_pred CceEEEEecc
Confidence 8899888733
No 120
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.47 E-value=3.9e-12 Score=129.98 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=149.3
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN 385 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~ 385 (634)
.|-..+-+|-++.+|++++.| .++-+|=.-.|+++-+++||++.| +.+++..+ ...+++||.|+
T Consensus 11 RplTqiKyN~eGDLlFscaKD------~~~~vw~s~nGerlGty~GHtGav--W~~Did~~--------s~~liTGSAD~ 74 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKD------STPTVWYSLNGERLGTYDGHTGAV--WCCDIDWD--------SKHLITGSADQ 74 (327)
T ss_pred cccceEEecCCCcEEEEecCC------CCceEEEecCCceeeeecCCCceE--EEEEecCC--------cceeeeccccc
Confidence 355556678899999999886 589999988899999999999986 56688877 46899999999
Q ss_pred eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC------CcEEEEecccc------c
Q 047036 386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD------GKIRLYSKTSM------R 453 (634)
Q Consensus 386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D------GtIRLWD~~t~------r 453 (634)
+++|||+.+++++ .++ ..+.++..+-|+.+|.++..+.| +.|-++|++.. +
T Consensus 75 t~kLWDv~tGk~l-a~~----------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 75 TAKLWDVETGKQL-ATW----------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred eeEEEEcCCCcEE-EEe----------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 9999999998653 333 34566778889999976666544 57899998721 1
Q ss_pred cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCc
Q 047036 454 QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN 532 (634)
Q Consensus 454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i 532 (634)
.+...++-+.+.|+.+-++|-|++|++ -.|+.|.+||++ +|+.. . +-..+|.+ ....+
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~----~g~~~---v-------------~s~~~h~~-~Ind~ 196 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR----TGKEL---V-------------DSDEEHSS-KINDL 196 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc----cCcee---e-------------echhhhcc-ccccc
Confidence 234567778899999999999999999 789999999986 45321 1 11112222 12356
Q ss_pred ccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036 533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 533 ~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
.|+|++ ...|.+|.|....+||+..
T Consensus 197 q~s~d~----------T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 197 QFSRDR----------TYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cccCCc----------ceEEecccCccceeeeccc
Confidence 777662 2456668999999999974
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=140.02 Aligned_cols=202 Identities=12% Similarity=0.124 Sum_probs=149.9
Q ss_pred cEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQA 332 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~ 332 (634)
-+-|+.. +++.||+.| .+|=+|....+.+. ..++ ..+.+...+-+..|+.+|++++.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----~v~~-------aHYQ~ITcL~fs~dgs~iiTgskD------ 144 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----NVLS-------AHYQSITCLKFSDDGSHIITGSKD------ 144 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHH-----HHHH-------hhccceeEEEEeCCCcEEEecCCC------
Confidence 3566666 999999998 58888987775421 1122 336778888899999999999886
Q ss_pred CcEEEEeCC---------CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036 333 PGVQQLDIE---------TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV 403 (634)
Q Consensus 333 ~TIrlWDle---------TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~ 403 (634)
+.|++|++. +=+.++.|..|+-.| +-..+.+- +. ...++|+|.|+|||+||+-.+. ++.++
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI--TDl~ig~G----g~--~~rl~TaS~D~t~k~wdlS~g~-LLlti- 214 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI--TDLQIGSG----GT--NARLYTASEDRTIKLWDLSLGV-LLLTI- 214 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCccee--EEEEecCC----Cc--cceEEEecCCceEEEEEeccce-eeEEE-
Confidence 789999863 336778899998654 22233332 11 3589999999999999998753 33333
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---------------cccccccCCCC--C
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---------------QAKTAFPGLGS--P 465 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---------------~akt~L~GH~d--~ 465 (634)
.....+.|++.+|.+ .+.+|+.+|.|-+.+..+.. .....|.||.+ +
T Consensus 215 ---------------~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 215 ---------------TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred ---------------ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 134457899999988 79999999999988764311 12235679999 9
Q ss_pred eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036 466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~ 505 (634)
|++|++|.||..|+| +.|+.++|||+. .-++++++.
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~----S~Q~iRtl~ 316 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIY----SKQCIRTLQ 316 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecc----hHHHHHHHh
Confidence 999999999999999 899999999986 344554444
No 122
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=136.52 Aligned_cols=257 Identities=18% Similarity=0.217 Sum_probs=168.9
Q ss_pred cEEEeee--CCCeEEEe---cCeeeEEEccCCceecc-eeEEEecCCCC---Cc-ccccC---cceeeEEeCCcceEEec
Q 047036 257 QSLTLGA--LDNSFLVS---DLGLQVYRNYNRGIHNK-GVSVRFDGGSS---KI-GSNST---PKKALLMRGETNMMLMS 323 (634)
Q Consensus 257 ~~LavG~--~D~sfvv~---G~~igV~k~~~~gl~~~-~~~~~~~~~~~---~~-g~~fs---P~~~mL~~~D~~mllss 323 (634)
|.|--.. ||+|.++. ++.+.+|....+...-+ .+.+.++-+.. .. +..+. -..+-+..+++++.+++
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 4455554 89988775 57888888755442211 11222221100 00 00010 01122345677777777
Q ss_pred CCCCCCCCCCcEEEEeCCCCcEEEEEec--cCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEc-CCCC-ce
Q 047036 324 PLKDGKPQAPGVQQLDIETGKIVTEWKF--EKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDM-RDRS-GI 398 (634)
Q Consensus 324 s~d~~~~~~~TIrlWDleTGK~V~~lkg--H~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~-R~~~-~~ 398 (634)
+.+ .-|++||.-||++...+.+ |.+.+. -..++|+|| |++|+.| ..++|+++|+ |.++ |.
T Consensus 130 sr~------~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--------GeqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 130 SRD------QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--------GEQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ccc------CceeeeeccccccccchhhhhhHHhhhhheeEEecCC--------CCeEeec-ccceEEEeeccCCCCCCc
Confidence 765 4699999999999988865 444331 023599999 7888875 6789999999 7664 33
Q ss_pred EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC
Q 047036 399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK 476 (634)
Q Consensus 399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk 476 (634)
+.+...| + .+...-.++|++++|-. .+|+||.-..+-||.-..+ ....+|-||+..|++|.|.+||.
T Consensus 195 vy~t~~~---------~-k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 195 VYTTVTK---------G-KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred chhhhhc---------c-cccccceeeeeeccCCCCcceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcC
Confidence 3222111 1 12234457999999854 7999999999888887665 47788899999999999999999
Q ss_pred EEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036 477 WILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA 554 (634)
Q Consensus 477 ~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt 554 (634)
.|.+ -+|-.|..||++ ..+..+-.+.+|.++- ...|-|--+ ...++|++
T Consensus 264 ~lfsGaRk~dkIl~WDiR---~~~~pv~~L~rhv~~T-----------------NQRI~FDld---------~~~~~Las 314 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIR---YSRDPVYALERHVGDT-----------------NQRILFDLD---------PKGEILAS 314 (406)
T ss_pred eecccccCCCeEEEEeeh---hccchhhhhhhhccCc-----------------cceEEEecC---------CCCceeec
Confidence 9998 468899999998 3566666777777632 112333322 12367877
Q ss_pred E-cCCeEEEEeChhh
Q 047036 555 T-VGKFSVIWDFQQV 568 (634)
Q Consensus 555 S-tg~~viiWdl~~v 568 (634)
+ ++++|.+||+++.
T Consensus 315 G~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 315 GDTDGSVRVWDLKDL 329 (406)
T ss_pred cCCCccEEEEecCCC
Confidence 5 9999999999863
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=6.1e-12 Score=130.97 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=144.5
Q ss_pred CCcEEEeee-CCCeEEEe---cCeeeEEEccCCceecc---eeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVS---DLGLQVYRNYNRGIHNK---GVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKD 327 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~---G~~igV~k~~~~gl~~~---~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~ 327 (634)
+.++-.++| .|+.+++. +..|+||+..+--.+-+ .+.+.+ +|. +.+.|.|+-. ..+++....
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhp--T~V~FapDc~-------s~vv~~~~g- 154 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHP--TRVVFAPDCK-------SVVVSVKRG- 154 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCc--eEEEECCCcc-------eEEEEEccC-
Confidence 455677777 67777765 46888888644211111 111222 221 4566666542 223333321
Q ss_pred CCCCCCcEEEEeCC---CCcEEEE------E---eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC
Q 047036 328 GKPQAPGVQQLDIE---TGKIVTE------W---KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR 395 (634)
Q Consensus 328 ~~~~~~TIrlWDle---TGK~V~~------l---kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~ 395 (634)
.+|+++-+. .|+.-.. + +-|.-.| |.+ -+... +..|+|+|.|.+|++||++
T Consensus 155 -----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~-i~i-GiA~~--------~k~imsas~dt~i~lw~lk-- 217 (420)
T KOG2096|consen 155 -----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI-INI-GIAGN--------AKYIMSASLDTKICLWDLK-- 217 (420)
T ss_pred -----CEEEEEEeeecccCCCCcccccccccccchhcccce-EEE-eecCC--------ceEEEEecCCCcEEEEecC--
Confidence 467666432 1332111 1 1233222 222 33333 4689999999999999998
Q ss_pred CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc-----ccc--cccccCCCCCeE
Q 047036 396 SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM-----RQA--KTAFPGLGSPIT 467 (634)
Q Consensus 396 ~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~-----r~a--kt~L~GH~d~It 467 (634)
+++++++.. +|. .-.-++.||+| +||+++..-+|++|.+--. +.. ...|.||...|+
T Consensus 218 Gq~L~~idt--------nq~-------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 218 GQLLQSIDT--------NQS-------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred Cceeeeecc--------ccc-------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence 334555531 011 11345779999 6999999999999997421 112 246889999999
Q ss_pred EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCC-C--cccccccccccc
Q 047036 468 HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGT-D--NKIHGGHFSWVT 543 (634)
Q Consensus 468 sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~-~--i~Ft~a~Fs~~t 543 (634)
+++|||+.+.+++ |.|+++||||+.+. | |. ...|++|+.-|.-.+.+|. + +.++|.
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdVr---------Y--~~---~qDpk~Lk~g~~pl~aag~~p~RL~lsP~------ 342 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDVR---------Y--EA---GQDPKILKEGSAPLHAAGSEPVRLELSPS------ 342 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccce---------E--ec---CCCchHhhcCCcchhhcCCCceEEEeCCC------
Confidence 9999999999999 99999999997531 1 11 2345566554322222222 2 222232
Q ss_pred cCCCCceEEEEEcCCeEEEEeChh
Q 047036 544 ENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 544 ~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
| +.++.|.|..+.++.-+.
T Consensus 343 --g---~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 343 --G---DSLAVSFGSDLKVFASED 361 (420)
T ss_pred --C---cEEEeecCCceEEEEccc
Confidence 3 577778888888887764
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.45 E-value=2.5e-12 Score=133.67 Aligned_cols=214 Identities=15% Similarity=0.184 Sum_probs=145.5
Q ss_pred EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceE
Q 047036 346 VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQ 425 (634)
Q Consensus 346 V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fs 425 (634)
+-.|..|...+ +.++++ +..+||||.|.+|+++|++.+.+ +..|..|.+. ++
T Consensus 36 lF~~~aH~~si--tavAVs----------~~~~aSGssDetI~IYDm~k~~q-lg~ll~Hags---------------it 87 (362)
T KOG0294|consen 36 LFAFSAHAGSI--TALAVS----------GPYVASGSSDETIHIYDMRKRKQ-LGILLSHAGS---------------IT 87 (362)
T ss_pred cccccccccce--eEEEec----------ceeEeccCCCCcEEEEeccchhh-hcceeccccc---------------eE
Confidence 44678898864 555665 57999999999999999998654 3555444433 57
Q ss_pred EEEECCCC---eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036 426 CFASTGDG---SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK 501 (634)
Q Consensus 426 sva~s~dG---~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~ 501 (634)
|+-|.+.- +|.+|+.||.|-+|+...- .+..+|.+|...|+.|++.|.|+.-+| +.|..||+|++. +|+
T Consensus 88 aL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV----~Gr-- 160 (362)
T KOG0294|consen 88 ALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV----RGR-- 160 (362)
T ss_pred EEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh----cCc--
Confidence 77777664 7999999999999998876 477889999999999999999999999 999999999986 333
Q ss_pred eeecCCCCCCCCCceeEeecCCCcccc------------C-----CCcccc----cccccccccCCCCceEEEEEcCCeE
Q 047036 502 TGFSGRMGNKIPAPRLLKLTPLDSHLA------------G-----TDNKIH----GGHFSWVTENGKQERHLVATVGKFS 560 (634)
Q Consensus 502 ~gF~gh~~~~~p~pr~L~L~Pe~~~~~------------g-----~~i~Ft----~a~Fs~~t~~g~~E~~IvtStg~~v 560 (634)
..|.-.+. ..+-++...|...++. . ..+.+. -+.| +.++.++|+..+..+
T Consensus 161 ~a~v~~L~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~------l~~~~L~vG~d~~~i 231 (362)
T KOG0294|consen 161 VAFVLNLK---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF------LDGSELLVGGDNEWI 231 (362)
T ss_pred cceeeccC---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee------cCCceEEEecCCceE
Confidence 23433332 2233455555443211 0 011111 2222 234577888888999
Q ss_pred EEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc---ccCCCCCCCEEE
Q 047036 561 VIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF---AVTDSPEAPLVV 619 (634)
Q Consensus 561 iiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f---~~~~~~~~~iiv 619 (634)
..||-.. ..|| ..+..|...|.+..|.-++| -...++|..|.|
T Consensus 232 ~~~D~ds-----~~~~-----------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 232 SLKDTDS-----DTPL-----------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred EEeccCC-----Cccc-----------eeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 9999764 2232 35777888888777644433 333344455544
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.8e-12 Score=144.91 Aligned_cols=211 Identities=14% Similarity=0.222 Sum_probs=147.9
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEE
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLC 388 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIk 388 (634)
.++++.+++.|++++.| +.||+|+...- ..-.++.-|... +.+++.. +..+++|+.+++|+
T Consensus 18 ~i~~d~~gefi~tcgsd------g~ir~~~~~sd~e~P~ti~~~g~~----v~~ia~~--------s~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 18 LICYDPDGEFICTCGSD------GDIRKWKTNSDEEEPETIDISGEL----VSSIACY--------SNHFLTGSEQNTVL 79 (933)
T ss_pred EEEEcCCCCEEEEecCC------CceEEeecCCcccCCchhhccCce----eEEEeec--------ccceEEeeccceEE
Confidence 34455566678888886 57999986543 222333325443 3455554 46899999999999
Q ss_pred EEEcCCCCc--eEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCC
Q 047036 389 QWDMRDRSG--IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP 465 (634)
Q Consensus 389 lWD~R~~~~--~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ 465 (634)
+.-.-.+.. ++.. ...++.+++++.+| +||.||.|-.|+|-+.... .....|.||..|
T Consensus 80 ~y~fps~~~~~iL~R------------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-s~~~~lrgh~ap 140 (933)
T KOG1274|consen 80 RYKFPSGEEDTILAR------------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-SQEKVLRGHDAP 140 (933)
T ss_pred EeeCCCCCccceeee------------------eeccceEEEEecCCcEEEeecCceeEEEEecccc-chheeecccCCc
Confidence 998765432 2111 23467889999999 8999999999999998775 467889999999
Q ss_pred eEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCC--C--CCceeEeecCCCccc-------------
Q 047036 466 ITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNK--I--PAPRLLKLTPLDSHL------------- 527 (634)
Q Consensus 466 ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~--~--p~pr~L~L~Pe~~~~------------- 527 (634)
|.+|+|+|.|.+||+ +||+.|++||+. +|.++.++.+-.... . ...-++...|...+.
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 999999999999999 999999999986 677776666644311 1 112334455552111
Q ss_pred -cCC-----------CcccccccccccccCCCCceEEEEE-cCCeEEEEeChh
Q 047036 528 -AGT-----------DNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDFQQ 567 (634)
Q Consensus 528 -~g~-----------~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl~~ 567 (634)
.+. .-.|+-..|+++ | ++|+|| .++-|.|||+++
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPn---G---~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPN---G---KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCC---C---cEEeeeccCCcEEEEeccc
Confidence 011 112556667764 5 788885 599999999996
No 126
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=6.8e-11 Score=118.72 Aligned_cols=231 Identities=14% Similarity=0.169 Sum_probs=156.3
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeC--CCCcEE---EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCe
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDI--ETGKIV---TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNR 386 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDl--eTGK~V---~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~t 386 (634)
++.++.+|..+++| ++|+++-. +|.+.+ -+|..|.+.|+ -++|--+.. +.+.+|++|+ .|+.
T Consensus 97 ws~~geliatgsnd------k~ik~l~fn~dt~~~~g~dle~nmhdgtir--dl~fld~~~----s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 97 WSPCGELIATGSND------KTIKVLPFNADTCNATGHDLEFNMHDGTIR--DLAFLDDPE----SGGAILASAGAGDCK 164 (350)
T ss_pred ecCccCeEEecCCC------ceEEEEecccccccccCcceeeeecCCcee--eeEEecCCC----cCceEEEecCCCcce
Confidence 34445566666654 79998754 343333 36888988764 458854422 1256888876 5899
Q ss_pred EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc----ccC
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA----FPG 461 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~----L~G 461 (634)
|.+=|...+.. .+.+.||...++ ++- +=+| .+|+||.|.+||+||++-. .+..+ +.+
T Consensus 165 iy~tdc~~g~~-~~a~sghtghil---------------aly-swn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 165 IYITDCGRGQG-FHALSGHTGHIL---------------ALY-SWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHD 226 (350)
T ss_pred EEEeecCCCCc-ceeecCCcccEE---------------EEE-EecCcEEEccCCCceEEEEeeecc-ceeeeccCcccC
Confidence 99999887653 577888876443 111 2245 7999999999999998743 24433 333
Q ss_pred CC---CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccc
Q 047036 462 LG---SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGG 537 (634)
Q Consensus 462 H~---d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a 537 (634)
-+ ..|.+|++-|.|+.|++ -.|...+|+|++ -|+.++.|.-|..+. |+ +.|+|.
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydir----g~r~iq~f~phsadi----r~--------------vrfsp~ 284 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----GGRMIQRFHPHSADI----RC--------------VRFSPG 284 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEee----CCceeeeeCCCccce----eE--------------EEeCCC
Confidence 33 67999999999999999 789999999987 578888888776533 33 455555
Q ss_pred cccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcccc-CCCCCCC
Q 047036 538 HFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAV-TDSPEAP 616 (634)
Q Consensus 538 ~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~-~~~~~~~ 616 (634)
.. ..+..|-|..|.+=||+.-+.-++. ...+.-|.+.++..+.-...|.| +++-|+.
T Consensus 285 a~----------yllt~syd~~ikltdlqgdla~el~------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 285 AH----------YLLTCSYDMKIKLTDLQGDLAHELP------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ce----------EEEEecccceEEEeecccchhhcCc------------eEEEEeccCceEEEEecCccceeeeccCcce
Confidence 22 3455577888999999866665554 24556677888888885556655 3443444
Q ss_pred E
Q 047036 617 L 617 (634)
Q Consensus 617 i 617 (634)
+
T Consensus 343 ~ 343 (350)
T KOG0641|consen 343 A 343 (350)
T ss_pred E
Confidence 3
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.44 E-value=7.4e-13 Score=153.57 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=127.6
Q ss_pred EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--CCCeEEEEEcCCC----CceEEecccCCCCcccccccccccc
Q 047036 347 TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL--DDNRLCQWDMRDR----SGIVQNMVKGDSPVLHWTQGHQFSR 420 (634)
Q Consensus 347 ~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS--~D~tIklWD~R~~----~~~Vq~l~gh~s~V~~~~~g~~y~~ 420 (634)
..|-+|.... |..++++|| +..++||+ .|+.+++|....= ......+..|-..+ -.+
T Consensus 6 p~wv~H~~~~-IfSIdv~pd--------g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m--------~~h 68 (942)
T KOG0973|consen 6 PTWVNHNEKS-IFSIDVHPD--------GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM--------DDH 68 (942)
T ss_pred ccccccCCee-EEEEEecCC--------ceeEecCCccccccceeeccccccchhhhhhcccchhheee--------ccc
Confidence 4577888775 566799999 67899999 9999999986521 00000111111100 013
Q ss_pred CcceEEEEECCCC-eEEEEECCCcEEEEeccc------cc-----------cccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036 421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS------MR-----------QAKTAFPGLGSPITHVDVTYDGKWILG-T 481 (634)
Q Consensus 421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~t------~r-----------~akt~L~GH~d~ItsVdfSpDGk~LlS-S 481 (634)
...++|+-|++|| +||+||+|+.|-+|.... .. ++...|.||...|..|++|||+.|||| +
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 3457899999999 899999999999999872 00 155678999999999999999999999 9
Q ss_pred cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeE
Q 047036 482 TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFS 560 (634)
Q Consensus 482 ~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~v 560 (634)
.|++|.||+.+ +.+++..+.||.+-. +.+.|-|. | +++++ |.|+.+
T Consensus 149 ~DnsViiwn~~----tF~~~~vl~~H~s~V------------------KGvs~DP~--------G---ky~ASqsdDrti 195 (942)
T KOG0973|consen 149 LDNSVIIWNAK----TFELLKVLRGHQSLV------------------KGVSWDPI--------G---KYFASQSDDRTL 195 (942)
T ss_pred ccceEEEEccc----cceeeeeeecccccc------------------cceEECCc--------c---CeeeeecCCceE
Confidence 99999999986 678888888887622 45777776 5 68877 889999
Q ss_pred EEEeC
Q 047036 561 VIWDF 565 (634)
Q Consensus 561 iiWdl 565 (634)
.||..
T Consensus 196 kvwrt 200 (942)
T KOG0973|consen 196 KVWRT 200 (942)
T ss_pred EEEEc
Confidence 99984
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=7.4e-12 Score=143.38 Aligned_cols=199 Identities=15% Similarity=0.192 Sum_probs=144.2
Q ss_pred EEEeeeCCCeEEEe--cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036 258 SLTLGALDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 258 ~LavG~~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI 335 (634)
+++.+-.-+-|++. ..+|++|+-... +..+.+-+|. .|-..+.++++++|++.+++| -.|
T Consensus 59 v~~ia~~s~~f~~~s~~~tv~~y~fps~--~~~~iL~Rft----------lp~r~~~v~g~g~~iaagsdD------~~v 120 (933)
T KOG1274|consen 59 VSSIACYSNHFLTGSEQNTVLRYKFPSG--EEDTILARFT----------LPIRDLAVSGSGKMIAAGSDD------TAV 120 (933)
T ss_pred eEEEeecccceEEeeccceEEEeeCCCC--Cccceeeeee----------ccceEEEEecCCcEEEeecCc------eeE
Confidence 33333344555554 368999985432 1222232331 477778889999999999987 689
Q ss_pred EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036 336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g 415 (634)
++.++..+-.+..++||+..| ..++|+|. ++.||+.+-||.|++||+..+.. ..+|.+-. +.+
T Consensus 121 K~~~~~D~s~~~~lrgh~apV--l~l~~~p~--------~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~-k~n----- 183 (933)
T KOG1274|consen 121 KLLNLDDSSQEKVLRGHDAPV--LQLSYDPK--------GNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVD-KDN----- 183 (933)
T ss_pred EEEeccccchheeecccCCce--eeeeEcCC--------CCEEEEEecCceEEEEEcccchh-hhhcccCC-ccc-----
Confidence 999999999999999999987 45599997 78999999999999999997643 34443211 110
Q ss_pred cccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccccc-ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTA-FPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~-L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.+...-.++-++++|+| .+|+.+.|++|++|++.+...+... ..-|...+..+.|||+|+|||+ +.|+-|.|||+.
T Consensus 184 -~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 184 -EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred -cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 11112234567899985 9999999999999998876322222 2234455999999999999999 999999999986
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.6e-12 Score=128.15 Aligned_cols=193 Identities=12% Similarity=0.106 Sum_probs=134.2
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCC-C--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIET-G--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleT-G--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
++|.++++| ++||+..++. | +.+.+|+||.+.| .-++|.. -|| |.+|||+|.|+.|.+|--..
T Consensus 24 krlATcsSD------~tVkIf~v~~n~~s~ll~~L~Gh~GPV--wqv~wah-Pk~-----G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 24 KRLATCSSD------GTVKIFEVRNNGQSKLLAELTGHSGPV--WKVAWAH-PKF-----GTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred ceeeeecCC------ccEEEEEEcCCCCceeeeEecCCCCCe--eEEeecc-ccc-----CcEeeEeecCceEEEEecCC
Confidence 457788876 7999999865 3 6889999999987 4568864 355 78999999999999998765
Q ss_pred CC-ceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEecccc--ccccccccCCCCCeEE
Q 047036 395 RS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSM--RQAKTAFPGLGSPITH 468 (634)
Q Consensus 395 ~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~--r~akt~L~GH~d~Its 468 (634)
++ ........| ...+.++++-|. | .||+||.||+|++.+..+- -........|.-.|++
T Consensus 90 g~w~k~~e~~~h---------------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 90 GRWTKAYEHAAH---------------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred Cchhhhhhhhhh---------------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 42 001112222 333567777665 4 5999999999999886542 1122345589999999
Q ss_pred EEECCC---C-----------CEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 469 VDVTYD---G-----------KWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 469 VdfSpD---G-----------k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
|+..|- | +.|+| +||+.|+||+..- ..=..-.+|++|.+= ..++.
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~--~~w~~e~~l~~H~dw------------------VRDVA 214 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS--DSWKLERTLEGHKDW------------------VRDVA 214 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCC--cchhhhhhhhhcchh------------------hhhhh
Confidence 999998 7 77999 9999999998531 111222346777641 12344
Q ss_pred cccccccccccCCCCceEEEE-EcCCeEEEEeCh
Q 047036 534 IHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQ 566 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~ 566 (634)
..|. . |-...+|++ |.|+.|+||--.
T Consensus 215 waP~-----~--gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 215 WAPS-----V--GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hccc-----c--CCCceeeEEecCCCcEEEEEec
Confidence 4444 3 223457777 679999999765
No 130
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.7e-12 Score=134.41 Aligned_cols=138 Identities=20% Similarity=0.258 Sum_probs=107.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~~ 411 (634)
++||++|..||+.+++|++|...++ .+.|..+. + +..+.||+.||+||+||+|+.++. +...
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~N--~vrf~~~d---s---~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~--------- 112 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATTN--GVRFISCD---S---PHGVISCSSDGTVRLWDIRSQAESARISW--------- 112 (376)
T ss_pred CeEEEEeccchhhhheecCCCCccc--ceEEecCC---C---CCeeEEeccCCeEEEEEeecchhhhheec---------
Confidence 6899999999999999999998764 55887642 1 578999999999999999987542 1111
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEE----CCCcEEEEecccccc-ccccccCCCCCeEEEEECCCC-CEEEE-EcC
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGS----LDGKIRLYSKTSMRQ-AKTAFPGLGSPITHVDVTYDG-KWILG-TTD 483 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS----~DGtIRLWD~~t~r~-akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D 483 (634)
. ++ ...+|.|++....+ .|+.|. .|-.+.|||++..++ .......|.+-||+|.|.|.- ..||| |.|
T Consensus 113 -~---~~-~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 113 -T---QQ-SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred -c---CC-CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 1 11 24578999887555 677775 577899999987544 334567999999999999976 56677 999
Q ss_pred CcEEEEEcc
Q 047036 484 TYLILICTL 492 (634)
Q Consensus 484 ~tIrLWD~~ 492 (634)
+.|.|+|+.
T Consensus 188 GLvnlfD~~ 196 (376)
T KOG1188|consen 188 GLVNLFDTK 196 (376)
T ss_pred ceEEeeecC
Confidence 999999987
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.41 E-value=1.5e-12 Score=145.48 Aligned_cols=211 Identities=14% Similarity=0.170 Sum_probs=155.4
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
+..+.+|++..|+.+|+ -++||++|+..-+.......|...| -++.|+.- .++ ..+||+
T Consensus 463 R~~~vSp~gqhLAsGDr--------------~GnlrVy~Lq~l~~~~~~eAHesEi--lcLeyS~p----~~~-~kLLAS 521 (1080)
T KOG1408|consen 463 RALAVSPDGQHLASGDR--------------GGNLRVYDLQELEYTCFMEAHESEI--LCLEYSFP----VLT-NKLLAS 521 (1080)
T ss_pred EEEEECCCcceecccCc--------------cCceEEEEehhhhhhhheeccccee--EEEeecCc----hhh-hHhhhh
Confidence 44556666665554443 2789999999888888899999875 33466532 233 469999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccc----------------------------------cccccccCcceEE
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT----------------------------------QGHQFSRGTNFQC 426 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~----------------------------------~g~~y~~~~~fss 426 (634)
||.|+.|.++|+...-.++|+|.+|++.|+.-. .+|+-..+..+.-
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 999999999999754457788888887654311 1111123444556
Q ss_pred EEECCCC-eEEEEECCCcEEEEecccccccccccc---CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036 427 FASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK 501 (634)
Q Consensus 427 va~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~ 501 (634)
++..|.- ++++++.|..||+||+.+++ .+.+|+ +|.+...-|.+-|.|-|||+ ..|++|.++|.. .|+|+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~----sgEcv 676 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV----SGECV 676 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccc-eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec----cchhh
Confidence 6777765 89999999999999999885 667777 46567788999999999999 669999999975 79999
Q ss_pred eeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE-EEEcCCeEEEEeCh
Q 047036 502 TGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL-VATVGKFSVIWDFQ 566 (634)
Q Consensus 502 ~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I-vtStg~~viiWdl~ 566 (634)
....||... ...+.|++++ ++| ..|.|+-|+||-|.
T Consensus 677 A~m~GHsE~------------------VTG~kF~nDC-----------kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 677 AQMTGHSEA------------------VTGVKFLNDC-----------KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhhcCcchh------------------eeeeeecccc-----------hhheeecCCceEEEEECc
Confidence 988888631 1357777763 344 45889999999884
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.38 E-value=7.7e-12 Score=129.45 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=89.1
Q ss_pred eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEE
Q 047036 358 ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIV 436 (634)
Q Consensus 358 I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IA 436 (634)
|+.++|||.. ..+++.||.|++||+|++...+..+-.- ++.+.-++.+++++.+| .++
T Consensus 30 IS~l~FSP~~-------~~~~~A~SWD~tVR~wevq~~g~~~~ka--------------~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 30 ISALAFSPQA-------DNLLAAGSWDGTVRIWEVQNSGQLVPKA--------------QQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred hheeEecccc-------CceEEecccCCceEEEEEecCCcccchh--------------hhccCCCeEEEEEccCCceEE
Confidence 4678999942 3578899999999999998643221100 12234456789999999 799
Q ss_pred EEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCC--EEEE-EcCCcEEEEEcc
Q 047036 437 VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK--WILG-TTDTYLILICTL 492 (634)
Q Consensus 437 SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk--~LlS-S~D~tIrLWD~~ 492 (634)
+|+-|+.++|||+.++ ....+-.|..||..+.|=+-.. .|++ |-|+||+.||++
T Consensus 89 ~g~~Dk~~k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred eeccCCceEEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 9999999999999986 3466778999999999988777 7888 999999999986
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=140.95 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=140.9
Q ss_pred CCCcEEEeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCC
Q 047036 254 GGVQSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGK 329 (634)
Q Consensus 254 ~~~~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~ 329 (634)
.+++.+||+- ..+.|++-| -.|.+|.. ..|++-+ .|. . +-..=.|...+..++-++.+++++.+
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm-QSGi~r~----sf~-~---~~ah~~~V~gla~D~~n~~~vsa~~~--- 514 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNM-QSGIHRK----SFG-D---SPAHKGEVTGLAVDGTNRLLVSAGAD--- 514 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEc-ccCeeec----ccc-c---CccccCceeEEEecCCCceEEEccCc---
Confidence 4678999998 899999987 47778874 4454321 121 0 00111244444455555567777765
Q ss_pred CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
+-++.||...+..+..|+-.... .....+.. ..+++.+.+|-.|++.|+.+++ +|+.+.||+.
T Consensus 515 ---Gilkfw~f~~k~l~~~l~l~~~~---~~iv~hr~--------s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~n-- 577 (910)
T KOG1539|consen 515 ---GILKFWDFKKKVLKKSLRLGSSI---TGIVYHRV--------SDLLAIALDDFSIRVVDVVTRK-VVREFWGHGN-- 577 (910)
T ss_pred ---ceEEEEecCCcceeeeeccCCCc---ceeeeeeh--------hhhhhhhcCceeEEEEEchhhh-hhHHhhcccc--
Confidence 78999999988888888755432 22233333 4689999999999999998854 6777877655
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC-CcE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD-TYL 486 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D-~tI 486 (634)
+++.++||||| .|++++.|++||+||+.++. +.-.| ....|.++|.|||+|.+||+ ..| +-|
T Consensus 578 -------------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 578 -------------RITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGI 642 (910)
T ss_pred -------------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeE-ecCCcceeeEECCCCCEEEEEEecCceE
Confidence 45788999999 79999999999999998874 44333 25689999999999999999 666 889
Q ss_pred EEEEc
Q 047036 487 ILICT 491 (634)
Q Consensus 487 rLWD~ 491 (634)
.||-.
T Consensus 643 ylWsN 647 (910)
T KOG1539|consen 643 YLWSN 647 (910)
T ss_pred EEEEc
Confidence 99964
No 134
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.37 E-value=4.5e-12 Score=132.32 Aligned_cols=190 Identities=16% Similarity=0.231 Sum_probs=129.1
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.||+.|+.++++...+.||...|+ -..|.|+. .+++++||.|.+||+|++++..| |..+.|.
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sIN--eik~~p~~-------~qlvls~SkD~svRlwnI~~~~C-v~VfGG~------- 177 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSIN--EIKFHPDR-------PQLVLSASKDHSVRLWNIQTDVC-VAVFGGV------- 177 (385)
T ss_pred eEEEEEecchhhhccceeccCccch--hhhcCCCC-------CcEEEEecCCceEEEEeccCCeE-EEEeccc-------
Confidence 7999999999999999999999865 44888872 47999999999999999998765 4555431
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--c-------------------ccccccC------CCC
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--Q-------------------AKTAFPG------LGS 464 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~-------------------akt~L~G------H~d 464 (634)
.||.+ .+.++-++.+| +|||++.|.+|+||++...+ . .++.||. |.+
T Consensus 178 -egHrd----eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn 252 (385)
T KOG1034|consen 178 -EGHRD----EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN 252 (385)
T ss_pred -ccccC----cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccc
Confidence 23322 35678899999 89999999999999987321 0 1122332 445
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc----eeEeecCCCccccCCCcccccccc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP----RLLKLTPLDSHLAGTDNKIHGGHF 539 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p----r~L~L~Pe~~~~~g~~i~Ft~a~F 539 (634)
+|-+|.|= |.+|+| ||++.|..|-. |+. .-...+.+|.. .+..+. +..-++-|.+=.|
T Consensus 253 yVDCvrw~--gd~ilSkscenaI~~w~p------gkl----~e~~~~vkp~es~~Ti~~~~~-----~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 253 YVDCVRWF--GDFILSKSCENAIVCWKP------GKL----EESIHNVKPPESATTILGEFD-----YPMCDIWFIRFAF 315 (385)
T ss_pred hHHHHHHH--hhheeecccCceEEEEec------chh----hhhhhccCCCccceeeeeEec-----cCccceEEEEEee
Confidence 55555443 579999 99999999974 321 11111222321 111111 0012456777777
Q ss_pred cccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036 540 SWVTENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 540 s~~t~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
++. .++||. ...+.|++|||+.
T Consensus 316 d~~------~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 316 DPW------QKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred cHH------HHHHhhccCCCcEEEEECCC
Confidence 763 256666 4688899999973
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=131.10 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=102.8
Q ss_pred CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCC---cEEEE
Q 047036 273 LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETG---KIVTE 348 (634)
Q Consensus 273 ~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTG---K~V~~ 348 (634)
.+|.+|+...++ ++.-...|.+| .++-..+++|.. .+|+++++-| ++||+||+..| -++.+
T Consensus 234 ~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE-------~~vfaScS~D------gsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 234 KGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTE-------DGVFASCSCD------GSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred cceEeeeeccCc--eeecCccccccccchhhhccCCcc-------CceEEeeecC------ceEEEEEecCCCccceeEe
Confidence 477888866633 44445556666 345677788763 4677788776 79999999999 45554
Q ss_pred EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC--CceEEecccCCCCccccccccccccCcceEE
Q 047036 349 WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR--SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC 426 (634)
Q Consensus 349 lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~--~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss 426 (634)
+.|...| .|++|+.. -.+||+|++|++++|||+|.- +++|.++..| +.+++|
T Consensus 299 -kAh~sDV--NVISWnr~--------~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---------------k~pIts 352 (440)
T KOG0302|consen 299 -KAHNSDV--NVISWNRR--------EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---------------KAPITS 352 (440)
T ss_pred -eccCCce--eeEEccCC--------cceeeecCCCceEEEEEhhhccCCCcceeEEec---------------cCCeeE
Confidence 8999876 47788865 248999999999999999963 3455555544 445789
Q ss_pred EEECCC--CeEEEEECCCcEEEEeccc
Q 047036 427 FASTGD--GSIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 427 va~s~d--G~IASGS~DGtIRLWD~~t 451 (634)
+.++|. +.||++|.|.+|.|||+..
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeec
Confidence 999875 4799999999999999863
No 136
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.35 E-value=2.3e-10 Score=113.50 Aligned_cols=132 Identities=21% Similarity=0.316 Sum_probs=106.5
Q ss_pred CcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 333 PGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 333 ~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
+++++||+.. +..+..+.+|...| ..++|+|+ +..+++++. |+++++|+++... .+..+.+|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 199 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESV--TSLAFSPD--------GKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTD--- 199 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccE--EEEEECCC--------CCEEEecCCCCCceEEEEcCCCc-eEEeeccCCC---
Confidence 7999999998 89999999999976 46699998 567888886 9999999998743 4566654443
Q ss_pred ccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc-cccCCCCCeEEEEECCCCCEEEE-EcCCcE
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPITHVDVTYDGKWILG-TTDTYL 486 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~ItsVdfSpDGk~LlS-S~D~tI 486 (634)
.+.++++++++ .+++++.|++|++||...+. ... .+.+|...+ -..|+|+|.++++ +.|+++
T Consensus 200 ------------~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 200 ------------PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK-LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred ------------ceEEEEEcCCcceEEEEecCCCcEEEEECCCCc-EEeeecCCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 35788888888 34555999999999977543 444 688999886 4499999988887 999999
Q ss_pred EEEEcc
Q 047036 487 ILICTL 492 (634)
Q Consensus 487 rLWD~~ 492 (634)
++|++.
T Consensus 266 ~~~~~~ 271 (466)
T COG2319 266 RLWDLR 271 (466)
T ss_pred EEeeec
Confidence 999976
No 137
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.33 E-value=5.2e-12 Score=133.14 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=112.1
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSEST 378 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~l 378 (634)
..+.|+|. +.+.|.++++| ++|.|+|+.+++.+++.. .-++ . ++|+|. +-.+
T Consensus 191 ~svkfNpv-------ETsILas~~sD------rsIvLyD~R~~~Pl~KVi~~mRTN----~-IswnPe--------afnF 244 (433)
T KOG0268|consen 191 SSVKFNPV-------ETSILASCASD------RSIVLYDLRQASPLKKVILTMRTN----T-ICWNPE--------AFNF 244 (433)
T ss_pred eEEecCCC-------cchheeeeccC------CceEEEecccCCccceeeeecccc----c-eecCcc--------ccce
Confidence 44555554 34556666665 689999999998887643 3333 2 399996 4578
Q ss_pred EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccc
Q 047036 379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt 457 (634)
++|+.|..|..+|+|.-..+++...+|.+.| ..|.|||-| -||+||.|.+||||.+..++ ...
T Consensus 245 ~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV---------------~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRd 308 (433)
T KOG0268|consen 245 VAANEDHNLYTYDMRNLSRPLNVHKDHVSAV---------------MDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRD 308 (433)
T ss_pred eeccccccceehhhhhhcccchhhcccceeE---------------EEeccCCCcchhccccccceEEEeecCCCc-chh
Confidence 9999999999999996555556666665544 567889999 59999999999999987653 111
Q ss_pred cc-cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 458 AF-PGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 458 ~L-~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.. .--..-|.+|.+|.|.+||+| |.|+.||||-..
T Consensus 309 iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 11 112246999999999999999 899999999865
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=4e-11 Score=121.47 Aligned_cols=193 Identities=11% Similarity=0.078 Sum_probs=132.5
Q ss_pred CcEEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 256 VQSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 256 ~~~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
++-||.++.|+ +|+||....+|. -....+|.||. |+--++| +|-.-+++|.+++.| +.
T Consensus 23 gkrlATcsSD~-------tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~w------ahPk~G~iLAScsYD------gk 81 (299)
T KOG1332|consen 23 GKRLATCSSDG-------TVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAW------AHPKFGTILASCSYD------GK 81 (299)
T ss_pred cceeeeecCCc-------cEEEEEEcCCCC--ceeeeEecCCCCCeeEEee------cccccCcEeeEeecC------ce
Confidence 45677777665 466777666552 12456777772 2222222 222345667777776 78
Q ss_pred EEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc-eEEe-cccCCCCcc
Q 047036 335 VQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG-IVQN-MVKGDSPVL 410 (634)
Q Consensus 335 IrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~-~Vq~-l~gh~s~V~ 410 (634)
|.+|.-+.|+- ..++..|...|+ .++|.|..- |-.||+||+|++|.+.+.+..+. .... ...|.
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVN--sV~waphey------gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~---- 149 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVN--SVAWAPHEY------GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE---- 149 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccce--eeccccccc------ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc----
Confidence 99999998853 456889999986 559999732 56899999999999999987521 1111 12222
Q ss_pred ccccccccccCcceEEEEECCC---------------CeEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCC
Q 047036 411 HWTQGHQFSRGTNFQCFASTGD---------------GSIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYD 474 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~d---------------G~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpD 474 (634)
.-+++++..|. -+||||+.|+.|+||+....+ .+-.+|.+|.+.|+.|+..|.
T Consensus 150 -----------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 150 -----------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred -----------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 22334433332 259999999999999976532 133569999999999999997
Q ss_pred C----CEEEE-EcCCcEEEEEcc
Q 047036 475 G----KWILG-TTDTYLILICTL 492 (634)
Q Consensus 475 G----k~LlS-S~D~tIrLWD~~ 492 (634)
= .+||| |.|+++.||-..
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEec
Confidence 5 57899 999999999754
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=2.4e-11 Score=126.53 Aligned_cols=222 Identities=17% Similarity=0.175 Sum_probs=148.7
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
..+.|+|-+-+ |.+|..| +.|-+||.-|-.+-+.|.+|.-.| +.+++|+| |+.|+|
T Consensus 27 ~~~~Fs~~G~~--------lAvGc~n------G~vvI~D~~T~~iar~lsaH~~pi--~sl~WS~d--------gr~Llt 82 (405)
T KOG1273|consen 27 ECCQFSRWGDY--------LAVGCAN------GRVVIYDFDTFRIARMLSAHVRPI--TSLCWSRD--------GRKLLT 82 (405)
T ss_pred ceEEeccCcce--------eeeeccC------CcEEEEEccccchhhhhhccccce--eEEEecCC--------CCEeee
Confidence 45667766644 4455554 789999999999999999999865 67899999 789999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCcccccccc--------------------------ccc-------cCcceEEE
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGH--------------------------QFS-------RGTNFQCF 427 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~--------------------------~y~-------~~~~fssv 427 (634)
+|.|+.|++||++.+.+ ++.+. -.+||+. .+.| .+- .+..-++.
T Consensus 83 sS~D~si~lwDl~~gs~-l~rir-f~spv~~-~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSP-LKRIR-FDSPVWG-AQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred ecCCceeEEEeccCCCc-eeEEE-ccCccce-eeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc
Confidence 99999999999997653 33321 1222211 0111 000 11112334
Q ss_pred EECCCC-eEEEEECCCcEEEEeccccccccccccCCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036 428 ASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG-SPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGF 504 (634)
Q Consensus 428 a~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF 504 (634)
.|.+.| +|.+|...|.|-+||..+.+ +...+.-.. ..|.+|-|+..|+.|+. |.|..||.+++.-.+..|+
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r----- 233 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR----- 233 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----
Confidence 567777 89999999999999998863 666555444 78999999999999999 9999999999762221121
Q ss_pred cCCCCCCCCCceeEeecCCCccc-cCCCcccccccccccccCCCCceEEEEE--cCCeEEEEe-----Chhhhcccc
Q 047036 505 SGRMGNKIPAPRLLKLTPLDSHL-AGTDNKIHGGHFSWVTENGKQERHLVAT--VGKFSVIWD-----FQQVKNSAH 573 (634)
Q Consensus 505 ~gh~~~~~p~pr~L~L~Pe~~~~-~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS--tg~~viiWd-----l~~v~~~~~ 573 (634)
-..+.|+|-.. ..+.+....++|+. + | | +|+++ ...-++||- |-+||.|..
T Consensus 234 ------------~~e~e~~~K~qDvVNk~~Wk~ccfs~-d--g--e-Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 234 ------------DGEVEPEHKLQDVVNKLQWKKCCFSG-D--G--E-YVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred ------------cCCcChhHHHHHHHhhhhhhheeecC-C--c--c-EEEeccccceeEEEEecCCcceeeeecCCc
Confidence 11233444211 12345677888874 2 3 4 56553 356789994 446666543
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.31 E-value=2.1e-11 Score=128.61 Aligned_cols=133 Identities=12% Similarity=0.161 Sum_probs=107.5
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
.|-+||.+.-..++.+.--.+. |.++.|+|-. -..|++|.+|++|-|+|+|+.. +++.+.
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dt--i~svkfNpvE-------TsILas~~sDrsIvLyD~R~~~-Pl~KVi---------- 227 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADS--ISSVKFNPVE-------TSILASCASDRSIVLYDLRQAS-PLKKVI---------- 227 (433)
T ss_pred eeeecccccCCccceeecCCCc--eeEEecCCCc-------chheeeeccCCceEEEecccCC-ccceee----------
Confidence 4999999999999998777775 4566999862 2589999999999999999864 233321
Q ss_pred cccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 414 QGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
.+..-..+|++|.+ .+++|+.|..+.+||.+.+..+.....+|.+.|.+|+|||-|+-++| |.|++|||+.+
T Consensus 228 ------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 228 ------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred ------eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence 12223567889988 58999999999999976655555667799999999999999999999 99999999997
Q ss_pred c
Q 047036 492 L 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 302 ~ 302 (433)
T KOG0268|consen 302 N 302 (433)
T ss_pred C
Confidence 5
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.29 E-value=1.7e-11 Score=130.48 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=108.2
Q ss_pred EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC------ceEEecccCCCCccccccccccccC
Q 047036 348 EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS------GIVQNMVKGDSPVLHWTQGHQFSRG 421 (634)
Q Consensus 348 ~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~------~~Vq~l~gh~s~V~~~~~g~~y~~~ 421 (634)
.+.||+..| +.+ +|+|-. .+.|||||.|.+|++|++-..+ .+|..|.||...|
T Consensus 76 ~v~GHt~~v-LDi-~w~Pfn-------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV------------ 134 (472)
T KOG0303|consen 76 LVCGHTAPV-LDI-DWCPFN-------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV------------ 134 (472)
T ss_pred CccCccccc-ccc-ccCccC-------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE------------
Confidence 468999987 344 888852 4799999999999999975432 2345566665433
Q ss_pred cceEEEEECCC--CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC
Q 047036 422 TNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG 498 (634)
Q Consensus 422 ~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G 498 (634)
-.++..|- ..|+|+|.|++|.|||+.++. +..+|. |.+.|++++|+.||.+|++ +.|+.||+||.+ +|
T Consensus 135 ---g~V~wHPtA~NVLlsag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr----~~ 205 (472)
T KOG0303|consen 135 ---GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPR----RG 205 (472)
T ss_pred ---EEEeecccchhhHhhccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCC----CC
Confidence 34455554 368999999999999999984 777777 9999999999999999999 679999999986 67
Q ss_pred CeeeeecCCCCCCCCCceeEeec
Q 047036 499 KTKTGFSGRMGNKIPAPRLLKLT 521 (634)
Q Consensus 499 ~~~~gF~gh~~~~~p~pr~L~L~ 521 (634)
+.+..-.+|.|.+ ++|.+-|.
T Consensus 206 ~~v~e~~~heG~k--~~Raifl~ 226 (472)
T KOG0303|consen 206 TVVSEGVAHEGAK--PARAIFLA 226 (472)
T ss_pred cEeeecccccCCC--cceeEEec
Confidence 7776667777743 23555443
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.29 E-value=4.5e-11 Score=124.98 Aligned_cols=229 Identities=14% Similarity=0.132 Sum_probs=140.2
Q ss_pred CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CC--cEEEEEec--cCCCcceeEEEEecCCCCCCCCC
Q 047036 300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TG--KIVTEWKF--EKDGTDITMRDITNDTKSSQLDP 374 (634)
Q Consensus 300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TG--K~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~ 374 (634)
+-|++|.+- +--.+.....+.+. +.|.++... .| ++++.+.. |... ..-++++-+..- +
T Consensus 41 I~gv~fN~~---~~~~e~~vfatvG~-------~rvtiy~c~~d~~ir~lq~y~D~d~~Es--fytcsw~yd~~~----~ 104 (385)
T KOG1034|consen 41 IFGVAFNSF---LGCDEPQVFATVGG-------NRVTIYECPGDGGIRLLQSYADEDHDES--FYTCSWSYDSNT----G 104 (385)
T ss_pred cceeeeehh---cCCCCCceEEEeCC-------cEEEEEEECCccceeeeeeccCCCCCcc--eEEEEEEecCCC----C
Confidence 356666532 22233334444444 245555533 23 55666543 3332 234588877542 1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM 452 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~ 452 (634)
+-.+|.|+.-|.||+.|+.++. +...+.||...| ..+-|-|.. +|++||.|-+||||++++.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~-~~~~~~ghG~sI---------------Neik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQ-CSKNYRGHGGSI---------------NEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred CeeEEeecceeEEEEEecchhh-hccceeccCccc---------------hhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 3589999999999999998765 457788887654 344556665 7999999999999999886
Q ss_pred ccccccc---cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCC--CeeeeecCCCCCCCCCceeEeecCCCcc
Q 047036 453 RQAKTAF---PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDG--KTKTGFSGRMGNKIPAPRLLKLTPLDSH 526 (634)
Q Consensus 453 r~akt~L---~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G--~~~~gF~gh~~~~~p~pr~L~L~Pe~~~ 526 (634)
. +...| .||.+.|.+|+|++||.+|+| ++|.+|+||++..++... ++..+|... +...|-|+.-.+.|.-..
T Consensus 169 ~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~-~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 169 V-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN-KTTRPFPTPKTHFPDFST 246 (385)
T ss_pred e-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC-CccCcCCccccccccccc
Confidence 3 65544 589999999999999999999 999999999986433222 222223211 122355555554554210
Q ss_pred ccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhc
Q 047036 527 LAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKN 570 (634)
Q Consensus 527 ~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~ 570 (634)
. .-..+--++--| - | ..|++ |.++-|+.|-.-++.+
T Consensus 247 ~--diHrnyVDCvrw-~--g---d~ilSkscenaI~~w~pgkl~e 283 (385)
T KOG1034|consen 247 T--DIHRNYVDCVRW-F--G---DFILSKSCENAIVCWKPGKLEE 283 (385)
T ss_pred c--ccccchHHHHHH-H--h---hheeecccCceEEEEecchhhh
Confidence 0 000000111111 1 3 35666 8899999998744443
No 143
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.28 E-value=2.3e-11 Score=132.25 Aligned_cols=196 Identities=14% Similarity=0.206 Sum_probs=131.8
Q ss_pred CCcEEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecC-CCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 255 GVQSLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDG-GSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~-~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
+.-++||.. +..+.|-.| .-|.||....-|-..-...+..-. ...++++... .|++.||.++.-
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~--------pdgrtLivGGea---- 486 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL--------PDGRTLIVGGEA---- 486 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec--------CCCceEEecccc----
Confidence 444788887 677777766 467889875443111111111100 0112333333 344556666653
Q ss_pred CCCcEEEEeCCCC--cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036 331 QAPGVQQLDIETG--KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 331 ~~~TIrlWDleTG--K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
.||-+||+.+- ++-.++....-. -..++++|| ....|++..|+.|.+||++.. .+|..|.||.+.
T Consensus 487 --stlsiWDLAapTprikaeltssapa--CyALa~spD--------akvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDG 553 (705)
T KOG0639|consen 487 --STLSIWDLAAPTPRIKAELTSSAPA--CYALAISPD--------AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDG 553 (705)
T ss_pred --ceeeeeeccCCCcchhhhcCCcchh--hhhhhcCCc--------cceeeeeccCCcEEEEEcccc-eeeecccCCCCC
Confidence 69999999764 344445432221 134588999 458999999999999999974 468889888764
Q ss_pred ccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc-CCcE
Q 047036 409 VLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT-DTYL 486 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~-D~tI 486 (634)
.+|+.++++| .|-+|+.|++||-||++.+|+... ......|.+|..+|.|.|||.+| .+.+
T Consensus 554 ---------------ascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 554 ---------------ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred ---------------ceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcE
Confidence 3799999999 799999999999999887653211 13457899999999999999966 4666
Q ss_pred EEEEcc
Q 047036 487 ILICTL 492 (634)
Q Consensus 487 rLWD~~ 492 (634)
-|..+.
T Consensus 617 evlh~s 622 (705)
T KOG0639|consen 617 EVLHTS 622 (705)
T ss_pred EEEecC
Confidence 666653
No 144
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.28 E-value=9.4e-10 Score=109.11 Aligned_cols=178 Identities=18% Similarity=0.312 Sum_probs=123.3
Q ss_pred CcEEEEeCCCCc-EEEEEeccCC-CcceeEEEE-ecCCCCCCCCCCC-EEEEEeC-CCeEEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGK-IVTEWKFEKD-GTDITMRDI-TNDTKSSQLDPSE-STFLGLD-DNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK-~V~~lkgH~~-~V~I~vvsf-sPd~K~~q~~~g~-~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
+.+.+|+...+. .+..+.++.. .+ ....+ +++ +. .++..+. |+++++||+......+..+.+|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 156 (466)
T COG2319 87 GTIKLWDLDNGEKLIKSLEGLHDSSV--SKLALSSPD--------GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSE 156 (466)
T ss_pred CcEEEEEcCCCceeEEEEeccCCCce--eeEEEECCC--------cceEEeccCCCCccEEEEEecCCCeEEEEEecCcc
Confidence 689999999887 8888888543 32 23344 565 33 4455444 999999999862233445544433
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEE-EcC
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILG-TTD 483 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlS-S~D 483 (634)
.+.++++++++ .+++++. |+.|++|+.... .....+.+|..+|.+++++|+|. .+++ +.|
T Consensus 157 ---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 157 ---------------SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred ---------------cEEEEEECCCCCEEEecCCCCCceEEEEcCCC-ceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 34688999999 7888885 999999998764 35677888999999999999998 6667 889
Q ss_pred CcEEEEEcccccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEE
Q 047036 484 TYLILICTLFSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVI 562 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~vii 562 (634)
++|++||.. .+..+. .+.+|... . +. .|++. + ...+.++.++.+.+
T Consensus 221 ~~i~~wd~~----~~~~~~~~~~~~~~~-------------------~-~~----~~~~~---~--~~~~~~~~d~~~~~ 267 (466)
T COG2319 221 GTIRLWDLS----TGKLLRSTLSGHSDS-------------------V-VS----SFSPD---G--SLLASGSSDGTIRL 267 (466)
T ss_pred CcEEEEECC----CCcEEeeecCCCCcc-------------------e-eE----eECCC---C--CEEEEecCCCcEEE
Confidence 999999864 455444 34444320 0 11 34321 2 24455678999999
Q ss_pred EeChhhh
Q 047036 563 WDFQQVK 569 (634)
Q Consensus 563 Wdl~~v~ 569 (634)
|++....
T Consensus 268 ~~~~~~~ 274 (466)
T COG2319 268 WDLRSSS 274 (466)
T ss_pred eeecCCC
Confidence 9987433
No 145
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2.9e-10 Score=131.91 Aligned_cols=242 Identities=15% Similarity=0.189 Sum_probs=148.9
Q ss_pred CCCeEEEecC---eeeEEEccCCceecceeEEEecCCCCCcccccCcce---eeEEeCCcceEEecCCCCCCCCCCcEEE
Q 047036 264 LDNSFLVSDL---GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKK---ALLMRGETNMMLMSPLKDGKPQAPGVQQ 337 (634)
Q Consensus 264 ~D~sfvv~G~---~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~---~mL~~~D~~mllsss~d~~~~~~~TIrl 337 (634)
.|.+.++.++ .|+||+...++ ..+-..++-. .+..+..+.+.+ ++-..+.+-.|+.+++- +.||+
T Consensus 1121 ~D~aLlLtas~dGvIRIwk~y~~~-~~~~eLVTaw--~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~------r~IRI 1191 (1387)
T KOG1517|consen 1121 QDDALLLTASSDGVIRIWKDYADK-WKKPELVTAW--SSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV------RSIRI 1191 (1387)
T ss_pred cchhheeeeccCceEEEecccccc-cCCceeEEee--ccccccCccCCCCCeeeehhhhCCeEEecCCe------eEEEE
Confidence 4666666654 67777775543 1111122100 011222222221 23344555566666653 68999
Q ss_pred EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccc
Q 047036 338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g 415 (634)
||+++.++++..-..++. ++.+.+++. . .|++++.|..||+||++|.|... +.|.....|+.+
T Consensus 1192 WDa~~E~~~~diP~~s~t---~vTaLS~~~----~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~------- 1256 (1387)
T KOG1517|consen 1192 WDAHKEQVVADIPYGSST---LVTALSADL----V-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV------- 1256 (1387)
T ss_pred EecccceeEeecccCCCc---cceeecccc----c-CCceEEEeecCCceEEeecccCCccccceeecccCCc-------
Confidence 999999999987666553 456788762 2 26899999999999999999753 345555555543
Q ss_pred cccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc---cccCC---CCCeEEEEECCCCCEEEEEcCCcEE
Q 047036 416 HQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT---AFPGL---GSPITHVDVTYDGKWILGTTDTYLI 487 (634)
Q Consensus 416 ~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt---~L~GH---~d~ItsVdfSpDGk~LlSS~D~tIr 487 (634)
.++.-+.+-+.| .|++||.||.|++||++.. .+. ++..| |+..+++.++++...|||+.-+.|+
T Consensus 1257 ------~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~--~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1257 ------EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS--SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred ------ccceeEEeecCCCcceeeeccCCeEEEEecccC--cccccceeeeccccCccceeeeeccCCCeeeecCcceEE
Confidence 012333445555 6999999999999998752 222 22233 4569999999999999993339999
Q ss_pred EEEcccccCCCCeeeeecC---CCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEe
Q 047036 488 LICTLFSDKDGKTKTGFSG---RMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWD 564 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~g---h~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWd 564 (634)
||++. |+.+..|.- -++.++..+- .+.|+|-+- ...+++.|.+|.|+.
T Consensus 1329 Iy~~~-----G~~l~~~k~n~~F~~q~~gs~s--------------cL~FHP~~~----------llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1329 IYSLS-----GEQLNIIKYNPGFMGQRIGSVS--------------CLAFHPHRL----------LLAAGSADSTVSIYS 1379 (1387)
T ss_pred EEecC-----hhhhcccccCcccccCcCCCcc--------------eeeecchhH----------hhhhccCCceEEEee
Confidence 99974 665554442 2233333222 345555521 233446788888886
Q ss_pred Ch
Q 047036 565 FQ 566 (634)
Q Consensus 565 l~ 566 (634)
-+
T Consensus 1380 ~~ 1381 (1387)
T KOG1517|consen 1380 CE 1381 (1387)
T ss_pred cC
Confidence 55
No 146
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=117.56 Aligned_cols=164 Identities=19% Similarity=0.292 Sum_probs=107.6
Q ss_pred ceeeEEeCCcc-eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 308 KKALLMRGETN-MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 308 ~~~mL~~~D~~-mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
.++|+.++..+ +|+++ .| +.|+.||+|+|++.++|+||++.|. +|+.=+. ..+|+||+.|+|
T Consensus 117 INam~ldP~enSi~~Ag-GD------~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~---------~~qilsG~EDGt 179 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAG-GD------GVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNA---------NGQILSGAEDGT 179 (325)
T ss_pred cceeEeccCCCcEEEec-CC------eEEEEEEecCCEEEEEEcCCcceee-eeeeccc---------CcceeecCCCcc
Confidence 46788885444 55555 43 6999999999999999999999875 4432222 358999999999
Q ss_pred EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
+|+||.+++++ |+.+. .|+-.. ..=|.-+.+|
T Consensus 180 vRvWd~kt~k~-v~~ie------------------------------------------~yk~~~-----~lRp~~g~wi 211 (325)
T KOG0649|consen 180 VRVWDTKTQKH-VSMIE------------------------------------------PYKNPN-----LLRPDWGKWI 211 (325)
T ss_pred EEEEeccccce-eEEec------------------------------------------cccChh-----hcCcccCcee
Confidence 99999998764 44442 233111 1112345678
Q ss_pred EEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCC
Q 047036 467 THVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENG 546 (634)
Q Consensus 467 tsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g 546 (634)
-+|+.+-| ||+++--..+-||.++. -++.+.|- -|.+++. + .|-
T Consensus 212 gala~~ed--WlvCGgGp~lslwhLrs----se~t~vfp---------------ipa~v~~----v-----~F~------ 255 (325)
T KOG0649|consen 212 GALAVNED--WLVCGGGPKLSLWHLRS----SESTCVFP---------------IPARVHL----V-----DFV------ 255 (325)
T ss_pred EEEeccCc--eEEecCCCceeEEeccC----CCceEEEe---------------cccceeE----e-----eee------
Confidence 88887766 99998778889999762 23322221 1222221 2 232
Q ss_pred CCceEEEEEcCCeEEEEeChhhhcccc
Q 047036 547 KQERHLVATVGKFSVIWDFQQVKNSAH 573 (634)
Q Consensus 547 ~~E~~IvtStg~~viiWdl~~v~~~~~ 573 (634)
+...++++.|+.|-.|.+..|++.+.
T Consensus 256 -~d~vl~~G~g~~v~~~~l~Gvl~a~i 281 (325)
T KOG0649|consen 256 -DDCVLIGGEGNHVQSYTLNGVLQANI 281 (325)
T ss_pred -cceEEEeccccceeeeeeccEEEEec
Confidence 12345556788999999988887554
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=1.5e-10 Score=124.71 Aligned_cols=191 Identities=14% Similarity=0.187 Sum_probs=125.7
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcE---EEEE------------------eccCCCcceeEEEEecCCCCCCC
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKI---VTEW------------------KFEKDGTDITMRDITNDTKSSQL 372 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~---V~~l------------------kgH~~~V~I~vvsfsPd~K~~q~ 372 (634)
.+-+|++..|..+ ..|.+||+.---. .-+| .||++.|. .+ +++.. +
T Consensus 189 ~~~gNyvAiGtmd------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl-~L-s~n~~--~--- 255 (463)
T KOG0270|consen 189 GGAGNYVAIGTMD------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL-AL-SWNRN--F--- 255 (463)
T ss_pred CCCcceEEEeccC------ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH-HH-Hhccc--c---
Confidence 3456788888886 4899999742110 1112 37988762 32 44443 1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecc
Q 047036 373 DPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 373 ~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~ 450 (634)
.+.|||||.|+||++||+.++++ .+++..|+. +++++.+.+.. .|++||.|++++|+|.+
T Consensus 256 --~nVLaSgsaD~TV~lWD~~~g~p-~~s~~~~~k---------------~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 256 --RNVLASGSADKTVKLWDVDTGKP-KSSITHHGK---------------KVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred --ceeEEecCCCceEEEEEcCCCCc-ceehhhcCC---------------ceeEEEecCCCceEEEeccccceEEeeecc
Confidence 36999999999999999999765 466654433 46788887764 79999999999999976
Q ss_pred ccccccccccCCCCCeEEEEECCCCCE--EEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCcccc
Q 047036 451 SMRQAKTAFPGLGSPITHVDVTYDGKW--ILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLA 528 (634)
Q Consensus 451 t~r~akt~L~GH~d~ItsVdfSpDGk~--LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~ 528 (634)
...++-.... ....|-.|++.|-... ++++.|++|+-+|+| ..|+++-....|-+..
T Consensus 318 ~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~I----------------- 376 (463)
T KOG0270|consen 318 DPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEI----------------- 376 (463)
T ss_pred CccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCc-----------------
Confidence 3211211121 2346888888876643 334889999999998 4667666666665311
Q ss_pred CCCcccccccccccccCCCCceEEE-EEcCCeEEEEeChh
Q 047036 529 GTDNKIHGGHFSWVTENGKQERHLV-ATVGKFSVIWDFQQ 567 (634)
Q Consensus 529 g~~i~Ft~a~Fs~~t~~g~~E~~Iv-tStg~~viiWdl~~ 567 (634)
..+.+.+. + ..+++ +|++++|.+|+|.-
T Consensus 377 -Sgl~~n~~-----~-----p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 377 -SGLSVNIQ-----T-----PGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred -ceEEecCC-----C-----CcceeeccccceEEEEeecC
Confidence 12332222 1 12444 48999999999973
No 148
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=1.6e-10 Score=127.53 Aligned_cols=166 Identities=18% Similarity=0.276 Sum_probs=121.5
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ 389 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl 389 (634)
+.+|...+.|++.++.. .||..+|+.|+.++.|+.....+ .++.++|. ..+|++|..+++|-.
T Consensus 139 m~y~~~scDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~l--N~v~in~~--------hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGEL--NVVSINEE--------HGLLACGTEDGVVEF 201 (703)
T ss_pred ccccCCCccEEEeecCc-------ceEEEEccccccccccccccccc--eeeeecCc--------cceEEecccCceEEE
Confidence 45677888888888774 49999999999999999988876 47799987 579999999999999
Q ss_pred EEcCCCCceEEecccCCCCccccccccccc-cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE
Q 047036 390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFS-RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT 467 (634)
Q Consensus 390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~-~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It 467 (634)
||+|.+.. |.+|...++ |.. |.+. ....++++.|+.+| .+|+|...|.|.|||+++.+.....=.+..-||.
T Consensus 202 wDpR~ksr-v~~l~~~~~-v~s----~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 202 WDPRDKSR-VGTLDAASS-VNS----HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred ecchhhhh-heeeecccc-cCC----CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcccee
Confidence 99998753 455542222 211 1111 23347999999999 7999999999999998763211111224457899
Q ss_pred EEEECCC--CCEEEEEcCCcEEEEEcccccCCCCeee
Q 047036 468 HVDVTYD--GKWILGTTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 468 sVdfSpD--Gk~LlSS~D~tIrLWD~~~~~~~G~~~~ 502 (634)
.|+|-+. +..|+|.....|+|||-. +|+...
T Consensus 276 ~l~~~~~~~q~~v~S~Dk~~~kiWd~~----~Gk~~a 308 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVSMDKRILKIWDEC----TGKPMA 308 (703)
T ss_pred eecccccCCCceEEecchHHhhhcccc----cCCcee
Confidence 9999766 445555556789999953 566443
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.19 E-value=4.8e-10 Score=122.07 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=134.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++|+|||+..-.+.+.+++|+..| ..|.+... .++||+++.-+-|.+-.+.++.. ..++. |.+
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stv--t~v~YN~~--------DeyiAsvs~gGdiiih~~~t~~~-tt~f~-~~s----- 163 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTV--TYVDYNNT--------DEYIASVSDGGDIIIHGTKTKQK-TTTFT-IDS----- 163 (673)
T ss_pred ceeeehhhHHHHHhhhccCCccee--EEEEecCC--------cceeEEeccCCcEEEEecccCcc-cccee-cCC-----
Confidence 799999999777888899999865 34466554 58999999999999999988643 23332 221
Q ss_pred ccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEE-EE-EcCCcEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWI-LG-TTDTYLIL 488 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~L-lS-S~D~tIrL 488 (634)
+-.+.-+-+++.. .|.++|.+|+|.|||+.+++.....+..|..|-.+|||||-..-| |+ ++|+.|.|
T Consensus 164 --------gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~ 235 (673)
T KOG4378|consen 164 --------GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI 235 (673)
T ss_pred --------CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence 1112334556554 689999999999999998653334567899999999999987655 55 99999999
Q ss_pred EEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChh
Q 047036 489 ICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 489 WD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
+|+.-+ + -.. +|..+ .-|+.-.|..+ | .++++ +..+-||-+|+..
T Consensus 236 yD~~s~----~-------------s~~---~l~y~--------~Plstvaf~~~---G---~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 236 YDIRSQ----A-------------STD---RLTYS--------HPLSTVAFSEC---G---TYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eecccc----c-------------ccc---eeeec--------CCcceeeecCC---c---eEEEeecCCceEEEEeccc
Confidence 997520 0 001 11222 22333344332 4 56666 5577899999975
Q ss_pred hhcccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036 568 VKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFM 603 (634)
Q Consensus 568 v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~ 603 (634)
.++-- -.|-.|+.+|..+.|.
T Consensus 282 ~k~Pv---------------~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 282 TKAPV---------------AVRSAHDASVTRVAFQ 302 (673)
T ss_pred CCCCc---------------eEeeecccceeEEEee
Confidence 44321 2466677778877773
No 150
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2e-10 Score=122.90 Aligned_cols=171 Identities=12% Similarity=0.168 Sum_probs=127.7
Q ss_pred ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036 304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD 383 (634)
Q Consensus 304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~ 383 (634)
.|.-.+++.++++++.|.+++.| +++|+|+...-..+-+...|...|. -+.|+|| |..|++-+.
T Consensus 143 ~~g~~k~vaf~~~gs~latgg~d------g~lRv~~~Ps~~t~l~e~~~~~eV~--DL~FS~d--------gk~lasig~ 206 (398)
T KOG0771|consen 143 DFGQQKVVAFNGDGSKLATGGTD------GTLRVWEWPSMLTILEEIAHHAEVK--DLDFSPD--------GKFLASIGA 206 (398)
T ss_pred hcCcceEEEEcCCCCEeeecccc------ceEEEEecCcchhhhhhHhhcCccc--cceeCCC--------CcEEEEecC
Confidence 34455788888998888888886 7999999777777778888888775 5699999 567999999
Q ss_pred CCeEEEEEcCCCCceEEecc----------------------------cCCCCc-----ccccccc-----cc-ccCcce
Q 047036 384 DNRLCQWDMRDRSGIVQNMV----------------------------KGDSPV-----LHWTQGH-----QF-SRGTNF 424 (634)
Q Consensus 384 D~tIklWD~R~~~~~Vq~l~----------------------------gh~s~V-----~~~~~g~-----~y-~~~~~f 424 (634)
| ..++||++++.+ ++.+. .-...| ..|..+. +. ....-+
T Consensus 207 d-~~~VW~~~~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 207 D-SARVWSVNTGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred C-ceEEEEeccCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 9 999999998722 11111 000111 1111110 00 113367
Q ss_pred EEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 425 QCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 425 ssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+|++.+++| ++|.|+.||.|-+++...++.....=..|...|++|.|+||-+++++ |.|+.++|.-+.
T Consensus 285 Ssl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 285 SSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 999999999 79999999999999998885333333489999999999999999999 999999998765
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.19 E-value=5e-10 Score=125.79 Aligned_cols=235 Identities=13% Similarity=0.141 Sum_probs=145.7
Q ss_pred ccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEE---EEEeccCCCcceeEEEEec-CCC--CCC-CCC
Q 047036 302 GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIV---TEWKFEKDGTDITMRDITN-DTK--SSQ-LDP 374 (634)
Q Consensus 302 g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V---~~lkgH~~~V~I~vvsfsP-d~K--~~q-~~~ 374 (634)
.-+.-|+.+-+...+.+--|++-.++ ..||+||+..-+.+ ..+--|...| +-+..-| +-+ -++ +.
T Consensus 320 ~~a~fPD~IA~~Fdet~~klscVYnd-----hSlYvWDvrD~~kvgk~~s~lyHS~ci--W~Ve~~p~nv~~~~~aclp- 391 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTDKLSCVYND-----HSLYVWDVRDVNKVGKCSSMLYHSACI--WDVENLPCNVHSPTAACLP- 391 (1080)
T ss_pred CcccCCceeEEEecCCCceEEEEEcC-----ceEEEEeccccccccceeeeeecccee--eeeccccccccCcccccCC-
Confidence 44455777555445455455555543 78999998763332 2344576643 2222222 111 112 22
Q ss_pred CCEEEEEeCCCeEEEEEcCCCC--ce-----E--------------EecccCCCCccccccccccccCcceEEEEECCCC
Q 047036 375 SESTFLGLDDNRLCQWDMRDRS--GI-----V--------------QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG 433 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~--~~-----V--------------q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG 433 (634)
..-++++|+|+|||+||+.... .+ . |.+.....++.+-+....|-..+-|.|++.+|+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 3578999999999999998521 10 0 0010111122111112234457789999999999
Q ss_pred -eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCC---CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036 434 -SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYD---GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 434 -~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpD---Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
+||+|-.-|.||+||+...+ ....+.+|...|.+|.+|.- -+.||| +.|.-|.++|+. ....+++++.+|.
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HS 547 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHS 547 (1080)
T ss_pred ceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccc
Confidence 89999999999999998874 66788999999999999953 255667 899999999986 3555566676665
Q ss_pred CCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccccc
Q 047036 509 GNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHE 574 (634)
Q Consensus 509 ~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~ 574 (634)
... ..++|-.+ |-+-+.|..++|+.++.=-+++.-.|.+-
T Consensus 548 ssI------------------TsvKFa~~--------gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 548 SSI------------------TSVKFACN--------GLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred cce------------------eEEEEeec--------CCceEEEeccCchhhheehhccccCceec
Confidence 421 23555544 33346777778887665444443334443
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.18 E-value=5.1e-10 Score=124.67 Aligned_cols=193 Identities=14% Similarity=0.134 Sum_probs=124.8
Q ss_pred CcEEEEeCCCCcE------EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe--ccc
Q 047036 333 PGVQQLDIETGKI------VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN--MVK 404 (634)
Q Consensus 333 ~TIrlWDleTGK~------V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~--l~g 404 (634)
+.|.+.|.+.-+. +..|..|.+.| +-+ .+.| + ..+|++++.|.||++||+...+. +.. +.
T Consensus 74 G~i~l~dt~~~~fr~ee~~lk~~~aH~nAi-fDl-~wap-g-------e~~lVsasGDsT~r~Wdvk~s~l-~G~~~~~- 141 (720)
T KOG0321|consen 74 GGIILFDTKSIVFRLEERQLKKPLAHKNAI-FDL-KWAP-G-------ESLLVSASGDSTIRPWDVKTSRL-VGGRLNL- 141 (720)
T ss_pred Cceeeecchhhhcchhhhhhccccccccee-Eee-ccCC-C-------ceeEEEccCCceeeeeeecccee-ecceeec-
Confidence 7888988764332 46788999875 233 5666 2 36899999999999999987653 222 33
Q ss_pred CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccc----------------c-------ccc--
Q 047036 405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMR----------------Q-------AKT-- 457 (634)
Q Consensus 405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r----------------~-------akt-- 457 (634)
||++. +-++||.+.. -+++|+.||.|.|||.+-.. . .+.
T Consensus 142 ----------GH~~S----vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 142 ----------GHTGS----VKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred ----------ccccc----cchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 44443 3566777765 68999999999999975210 0 000
Q ss_pred -cccCCCCCeEE---EEECCCCCEEEE-Ec-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036 458 -AFPGLGSPITH---VDVTYDGKWILG-TT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD 531 (634)
Q Consensus 458 -~L~GH~d~Its---VdfSpDGk~LlS-S~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~ 531 (634)
.=..|+..|.+ |-+..|...||+ +. |+.|++||++ +..+. |. ..|+...-.|-+.....+-
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR----k~~~~--~r-------~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR----KNYTA--YR-------QEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec----ccccc--cc-------cCCCcccCccCcccceeee
Confidence 11256778888 888899999998 65 9999999987 22211 11 2222222223332111133
Q ss_pred cccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc
Q 047036 532 NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA 572 (634)
Q Consensus 532 i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~ 572 (634)
.+|+-+.| | .+..+.++|+.|+.||+.....+-
T Consensus 275 ~nL~lDss------G--t~L~AsCtD~sIy~ynm~s~s~sP 307 (720)
T KOG0321|consen 275 VNLILDSS------G--TYLFASCTDNSIYFYNMRSLSISP 307 (720)
T ss_pred EEEEecCC------C--CeEEEEecCCcEEEEeccccCcCc
Confidence 66776654 3 355666889999999997554443
No 153
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.17 E-value=3.4e-10 Score=126.98 Aligned_cols=220 Identities=17% Similarity=0.201 Sum_probs=133.1
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCC---
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSP--- 408 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~--- 408 (634)
..|-+||..+-.++.++.||...|+ ++.+-|++++. ..++||+.|++|.+|-+|... ..++++.+|...
T Consensus 34 ~~Iav~dp~k~~i~t~l~GH~a~Vn--C~~~l~~s~~~-----a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~c 106 (764)
T KOG1063|consen 34 PAIAVADPEKILIVTTLDGHVARVN--CVHWLPTSEIV-----AEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVC 106 (764)
T ss_pred ceEEEeCcccceeEEeccCCccceE--EEEEccccccc-----ceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEE
Confidence 5799999998888899999999874 66999986532 389999999999999999432 234556554432
Q ss_pred ----------------cccccc-cccc--ccCcce-------EEEEECC-CC--eEEEEECCCcEEEEeccccc-ccccc
Q 047036 409 ----------------VLHWTQ-GHQF--SRGTNF-------QCFASTG-DG--SIVVGSLDGKIRLYSKTSMR-QAKTA 458 (634)
Q Consensus 409 ----------------V~~~~~-g~~y--~~~~~f-------ssva~s~-dG--~IASGS~DGtIRLWD~~t~r-~akt~ 458 (634)
|..|.. .... ....+| .|++..+ .+ .+|.|+.+..|.||--...+ +.+..
T Consensus 107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 222322 1000 000001 2333333 33 46888888888888754321 13457
Q ss_pred ccCCCCCeEEEEECCCCC---EEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCce-----eEeecCCCccccC
Q 047036 459 FPGLGSPITHVDVTYDGK---WILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPR-----LLKLTPLDSHLAG 529 (634)
Q Consensus 459 L~GH~d~ItsVdfSpDGk---~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr-----~L~L~Pe~~~~~g 529 (634)
|.||+|+|.+|+|..-|. +||| |.|.|||||.+.+.+..++....+.-....+.|.-- .++++-+.. .+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal-l~G 265 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL-LMG 265 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh-hcC
Confidence 889999999999998776 6667 889999999998765333322222222211122211 122222221 223
Q ss_pred CCcccccccccccccCCCCceEEEEEcCCeEEEEeC
Q 047036 530 TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDF 565 (634)
Q Consensus 530 ~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl 565 (634)
.+---..-.|.+ .+ ...+.+|.|+..+||-=
T Consensus 266 HeDWV~sv~W~p---~~--~~LLSASaDksmiiW~p 296 (764)
T KOG1063|consen 266 HEDWVYSVWWHP---EG--LDLLSASADKSMIIWKP 296 (764)
T ss_pred cccceEEEEEcc---ch--hhheecccCcceEEEec
Confidence 321112223332 12 46778899999999953
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.16 E-value=1e-09 Score=117.36 Aligned_cols=142 Identities=11% Similarity=0.127 Sum_probs=111.5
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCc---------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGK---------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ 389 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK---------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl 389 (634)
.|.+++.| +.||+|-++++. .+..|..|...|+ ++.|+|+ |++||||++++.|.+
T Consensus 28 ~laT~G~D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN--~vRf~p~--------gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 28 KLATAGGD------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN--VVRFSPD--------GELLASGGDGGEVFL 91 (434)
T ss_pred ceecccCc------cceeeeeeeecCCCCCceeEEEeecccCCcceeE--EEEEcCC--------cCeeeecCCCceEEE
Confidence 67777776 579999887642 3456889999875 7799998 899999999999999
Q ss_pred EEcC--------C-----CC--ceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036 390 WDMR--------D-----RS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 390 WD~R--------~-----~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r 453 (634)
|-.. + +. .+.+.+.+|.. .+.-+|.++++ ++++||.|+++++||+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~---------------diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G- 155 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD---------------DIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG- 155 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEeccccc---------------chhhhhccCCCceeeeeeccceEEEEEeccc-
Confidence 9765 1 10 11223333333 23345778888 7999999999999999988
Q ss_pred cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 454 QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+....+.+|...|.++++-|-++||++ ++|...+.+.+.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 478889999999999999999999999 999866666654
No 155
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=2.1e-09 Score=117.72 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=81.7
Q ss_pred CcEEEEeCCCCc--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEE--EcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGK--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQW--DMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklW--D~R~~~~~Vq~l~gh~s 407 (634)
.+|++||+.+|+ ++..+.+|.. ..+|+|| |+.|+.++ .++.+.+| |+.++. +..+..+.
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-----~~~wSPD--------G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~- 291 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-----APAFSPD--------GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGA- 291 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-----ceeECCC--------CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCC-
Confidence 579999999986 4666777753 2489999 56676654 67765555 665443 23443221
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
....+.+++||| +|+.++ .+|.++||++.........+ ++.. .+++|||||++|+. +.+
T Consensus 292 --------------~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~- 353 (429)
T PRK01742 292 --------------GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD- 353 (429)
T ss_pred --------------CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-
Confidence 123567889999 576555 67899999864311122333 3433 46889999999988 554
Q ss_pred cEEEEEcc
Q 047036 485 YLILICTL 492 (634)
Q Consensus 485 tIrLWD~~ 492 (634)
.|.+||+.
T Consensus 354 ~i~~~Dl~ 361 (429)
T PRK01742 354 NVVKQDLT 361 (429)
T ss_pred CEEEEECC
Confidence 56668864
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.14 E-value=1.6e-09 Score=118.14 Aligned_cols=198 Identities=17% Similarity=0.154 Sum_probs=131.4
Q ss_pred CCcEEEEeCCCCc-----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036 332 APGVQQLDIETGK-----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD 406 (634)
Q Consensus 332 ~~TIrlWDleTGK-----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~ 406 (634)
|+.+++|--. |+ +++.+.|... .||.+.+ . ..++++|+..++|+|||+|.+ .+.+.|.+|.
T Consensus 56 dk~~~~~~K~-g~~~~Vp~~~k~~gd~~---~Cv~~~s-~--------S~y~~sgG~~~~Vkiwdl~~k-l~hr~lkdh~ 121 (673)
T KOG4378|consen 56 DKVMRIKEKD-GKTPEVPRVRKLTGDNA---FCVACAS-Q--------SLYEISGGQSGCVKIWDLRAK-LIHRFLKDHQ 121 (673)
T ss_pred ceeEEEeccc-CCCCccceeeccccchH---HHHhhhh-c--------ceeeeccCcCceeeehhhHHH-HHhhhccCCc
Confidence 3789999643 44 4556666643 2443333 2 368999999999999999954 3456777776
Q ss_pred CCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE--Ec
Q 047036 407 SPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG--TT 482 (634)
Q Consensus 407 s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS--S~ 482 (634)
+. ++|+..+- |-|||++|.-|.|-|-.+.++. ..++|. +-++.|+.|.+||--+.||+ +.
T Consensus 122 st---------------vt~v~YN~~DeyiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd 185 (673)
T KOG4378|consen 122 ST---------------VTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASD 185 (673)
T ss_pred ce---------------eEEEEecCCcceeEEeccCCcEEEEecccCc-cccceecCCCCeEEEeecccccceeeEeecc
Confidence 54 45666654 4599999999999999998852 335554 34677889999999999997 78
Q ss_pred CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEE
Q 047036 483 DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSV 561 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~vi 561 (634)
+++|.|||+. |.-. .| |.. -.|.+.+ ..++|+|. +|..||+ +-|+.|+
T Consensus 186 ~G~VtlwDv~-----g~sp-~~--~~~------------~~HsAP~-~gicfsps----------ne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 186 KGAVTLWDVQ-----GMSP-IF--HAS------------EAHSAPC-RGICFSPS----------NEALLVSVGYDKKIN 234 (673)
T ss_pred CCeEEEEecc-----CCCc-cc--chh------------hhccCCc-CcceecCC----------ccceEEEecccceEE
Confidence 9999999985 2210 00 010 1111111 24666665 3677777 7899999
Q ss_pred EEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 562 IWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 562 iWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
++|... +.+.+|..|.-+. ..+.||.+-+
T Consensus 235 ~yD~~s------------~~s~~~l~y~~Pl-----stvaf~~~G~ 263 (673)
T KOG4378|consen 235 IYDIRS------------QASTDRLTYSHPL-----STVAFSECGT 263 (673)
T ss_pred Eeeccc------------ccccceeeecCCc-----ceeeecCCce
Confidence 999862 1234455555443 4566766666
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.13 E-value=1.7e-09 Score=117.00 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=132.2
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-Cc---EEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GK---IVTEWKFEKDGTDITMRDITNDTKSSQLDPSE 376 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK---~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~ 376 (634)
.+.+|.|.. ..+|+++|.. . ++|-+||+.+ ++ -+.-|..|...| +.+.|+|.. -.
T Consensus 190 t~l~fHPt~------~~~lva~GdK-~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~V--s~l~F~P~n-------~s 248 (498)
T KOG4328|consen 190 TSLAFHPTE------NRKLVAVGDK-G-----GQVGLWNFGTQEKDKDGVYLFTPHSGPV--SGLKFSPAN-------TS 248 (498)
T ss_pred EEEEecccC------cceEEEEccC-C-----CcEEEEecCCCCCccCceEEeccCCccc--cceEecCCC-------hh
Confidence 456666654 2345555543 3 8999999942 22 344577888766 456899872 36
Q ss_pred EEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEECCCcEEEEecccccc
Q 047036 377 STFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQ 454 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~ 454 (634)
++++.|.||+|++-|+.... ..|.++. . ...-|+.+-++.. +.++.|..=|...+||+++...
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~--~-------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLD--T-------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcC--c-------------cceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 89999999999999997532 1111110 0 1123555666554 4677777777999999877543
Q ss_pred ccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCc
Q 047036 455 AKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN 532 (634)
Q Consensus 455 akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i 532 (634)
....+.-|.-.|++|+|+|--.|+++ |.|.|++|||++. +.. |+.| .|... +| ..
T Consensus 314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~--------------l~~-K~sp-~lst~-~H------rr 370 (498)
T KOG4328|consen 314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ--------------LRG-KASP-FLSTL-PH------RR 370 (498)
T ss_pred cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh--------------hcC-CCCc-ceecc-cc------cc
Confidence 33456678889999999999988765 7899999999872 211 1223 22211 12 12
Q ss_pred ccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036 533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 533 ~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
.-..|+|||.. | +.++|+.|.+|.|||..
T Consensus 371 sV~sAyFSPs~--g---tl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 371 SVNSAYFSPSG--G---TLLTTCQDNEIRVFDSS 399 (498)
T ss_pred eeeeeEEcCCC--C---ceEeeccCCceEEeecc
Confidence 33467777622 3 56666899999999985
No 158
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3e-09 Score=110.80 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=137.9
Q ss_pred eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc---eEEecccCCCCccccccccccccCcceEE
Q 047036 350 KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG---IVQNMVKGDSPVLHWTQGHQFSRGTNFQC 426 (634)
Q Consensus 350 kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~---~Vq~l~gh~s~V~~~~~g~~y~~~~~fss 426 (634)
.+|.+-| ..+.|.+- |+.+|+||.|.+|++||.+.... +......|.+.| -.
T Consensus 10 s~h~Dli--hdVs~D~~--------GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si---------------~r 64 (361)
T KOG2445|consen 10 SGHKDLI--HDVSFDFY--------GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI---------------WR 64 (361)
T ss_pred cCCccee--eeeeeccc--------CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcE---------------EE
Confidence 3677754 45577775 78999999999999999865421 222333444432 22
Q ss_pred EEE-CC-CC-eEEEEECCCcEEEEeccc--cc------cccccccCCCCCeEEEEECCC--CCEEEE-EcCCcEEEEEcc
Q 047036 427 FAS-TG-DG-SIVVGSLDGKIRLYSKTS--MR------QAKTAFPGLGSPITHVDVTYD--GKWILG-TTDTYLILICTL 492 (634)
Q Consensus 427 va~-s~-dG-~IASGS~DGtIRLWD~~t--~r------~akt~L~GH~d~ItsVdfSpD--Gk~LlS-S~D~tIrLWD~~ 492 (634)
|.. +| =| -||++|.|++|+||.-.. .+ ...++|..-...|+.|.|.|- |-.||+ +.|++|||+++.
T Consensus 65 V~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~ 144 (361)
T KOG2445|consen 65 VVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAP 144 (361)
T ss_pred EEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecC
Confidence 222 33 36 589999999999998521 10 123456666788999999985 667888 999999999864
Q ss_pred cccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCC------eEEEEeC
Q 047036 493 FSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGK------FSVIWDF 565 (634)
Q Consensus 493 ~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~------~viiWdl 565 (634)
- -+.+.+ .+..-+.+. ...|.-.+..-..++..|.+|. +..|+.+.+. -++||-+
T Consensus 145 d---p~nLs~W~Lq~Ei~~~-------~~pp~~~~~~~~CvsWn~sr~~--------~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 145 D---PMNLSQWTLQHEIQNV-------IDPPGKNKQPCFCVSWNPSRMH--------EPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred C---ccccccchhhhhhhhc-------cCCcccccCcceEEeecccccc--------CceEEEEcccCCccccceEEEEe
Confidence 1 111110 111111100 0011111110112444455543 5688887777 8899976
Q ss_pred hhhhcccccccccccCCccee-eEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCCC
Q 047036 566 QQVKNSAHECYRNQQGLKSCY-CYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGRR 634 (634)
Q Consensus 566 ~~v~~~~~~~y~~~~~~~~~~-~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~~ 634 (634)
..-.+ +|. -=.++.+...|.+..| ++|- |-+ -.-|-||+.+-|.-+++..+|
T Consensus 207 ~e~~r-------------Kw~kva~L~d~~dpI~di~w-APn~--Gr~-y~~lAvA~kDgv~I~~v~~~~ 259 (361)
T KOG2445|consen 207 NENGR-------------KWLKVAELPDHTDPIRDISW-APNI--GRS-YHLLAVATKDGVRIFKVKVAR 259 (361)
T ss_pred cCCcc-------------eeeeehhcCCCCCcceeeee-cccc--CCc-eeeEEEeecCcEEEEEEeecc
Confidence 53221 111 1246788999999999 8887 432 356778998888888876543
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=9.2e-09 Score=115.45 Aligned_cols=206 Identities=17% Similarity=0.167 Sum_probs=137.8
Q ss_pred EEEeee--CCCeEEEe--cCeeeEEEccCCceecceeEEEecCCC--CCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 258 SLTLGA--LDNSFLVS--DLGLQVYRNYNRGIHNKGVSVRFDGGS--SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 258 ~LavG~--~D~sfvv~--G~~igV~k~~~~gl~~~~~~~~~~~~~--~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
..++|| .+++..+. .-.|.+|....+=. +...+.++. ++.+.+|. ++..|++++.+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~----~~~vi~g~~drsIE~L~W~---------e~~RLFS~g~s----- 89 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF----LEPVIHGPEDRSIESLAWA---------EGGRLFSSGLS----- 89 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce----eeEEEecCCCCceeeEEEc---------cCCeEEeecCC-----
Confidence 455566 44443332 35788887655321 122334431 22333333 55667777765
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++|.-||+.+++.+..+..-.+. |+..+++|. +..++.|++|+.++..+...+. ++-- .++
T Consensus 90 -g~i~EwDl~~lk~~~~~d~~gg~--IWsiai~p~--------~~~l~IgcddGvl~~~s~~p~~--I~~~-----r~l- 150 (691)
T KOG2048|consen 90 -GSITEWDLHTLKQKYNIDSNGGA--IWSIAINPE--------NTILAIGCDDGVLYDFSIGPDK--ITYK-----RSL- 150 (691)
T ss_pred -ceEEEEecccCceeEEecCCCcc--eeEEEeCCc--------cceEEeecCCceEEEEecCCce--EEEE-----eec-
Confidence 79999999999999998877664 577799998 5789999999988888775532 2110 011
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc---ccccCCC----CCeEEEEECCCCCEEEEEcC
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK---TAFPGLG----SPITHVDVTYDGKWILGTTD 483 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak---t~L~GH~----d~ItsVdfSpDGk~LlSS~D 483 (634)
. ..+.++.|+.+.++| +||+||.||.||+||+..+.... ..+.+.+ --|++|.|=.||..+..-.-
T Consensus 151 ---~---rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~ 224 (691)
T KOG2048|consen 151 ---M---RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA 224 (691)
T ss_pred ---c---cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC
Confidence 1 123467899999999 59999999999999998764222 1233333 24789999999875544667
Q ss_pred CcEEEEEcccccCCCCeeeeecCCCCC
Q 047036 484 TYLILICTLFSDKDGKTKTGFSGRMGN 510 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~gF~gh~~~ 510 (634)
++|.+||.. .|.+++.|.-|.++
T Consensus 225 G~V~FWd~~----~gTLiqS~~~h~ad 247 (691)
T KOG2048|consen 225 GTVTFWDSI----FGTLIQSHSCHDAD 247 (691)
T ss_pred ceEEEEccc----Ccchhhhhhhhhcc
Confidence 999999975 57777777766653
No 160
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.2e-08 Score=114.56 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=116.7
Q ss_pred ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcE-EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI-VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~-V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
...|.++-.++.|..+-.+ ++|-+|++..+=+ ...+.||.+. .|..++|++ +..|+|.+-+++
T Consensus 28 I~slA~s~kS~~lAvsRt~------g~IEiwN~~~~w~~~~vi~g~~dr-sIE~L~W~e---------~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTD------GNIEIWNLSNNWFLEPVIHGPEDR-SIESLAWAE---------GGRLFSSGLSGS 91 (691)
T ss_pred eEEEEEeccCCceeeeccC------CcEEEEccCCCceeeEEEecCCCC-ceeeEEEcc---------CCeEEeecCCce
Confidence 3466777777778887775 6899999998754 4568888887 367779995 468999999999
Q ss_pred EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-cccccccCCCC
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGS 464 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d 464 (634)
|.-||+.+.+.. ..+.. ....+.++|.+|.+ .+++|+.||.+.+++..... .-++.|.--..
T Consensus 92 i~EwDl~~lk~~-~~~d~---------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 92 ITEWDLHTLKQK-YNIDS---------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred EEEEecccCcee-EEecC---------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 999999876532 23321 23346788888888 79999999977666654421 12345666678
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.|.+|+|+|+|..|++ |.|+-||+||+.
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcC
Confidence 9999999999999999 889999999986
No 161
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.3e-09 Score=113.33 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=87.7
Q ss_pred eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEE
Q 047036 358 ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVV 437 (634)
Q Consensus 358 I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IAS 437 (634)
|+.+.|+|. ++.|+.+|.|++++++|+.... +.+. |.+..++.++||.++..+++
T Consensus 16 IS~v~f~~~--------~~~LLvssWDgslrlYdv~~~~-l~~~----------------~~~~~plL~c~F~d~~~~~~ 70 (323)
T KOG1036|consen 16 ISSVKFSPS--------SSDLLVSSWDGSLRLYDVPANS-LKLK----------------FKHGAPLLDCAFADESTIVT 70 (323)
T ss_pred eeeEEEcCc--------CCcEEEEeccCcEEEEeccchh-hhhh----------------eecCCceeeeeccCCceEEE
Confidence 466799976 4677778899999999987532 2112 33455677889998889999
Q ss_pred EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
|+.||.||++|+.++ ....+..|..+|++|..++--..++| |-|++|++||.+
T Consensus 71 G~~dg~vr~~Dln~~--~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTG--NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred eccCceEEEEEecCC--cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 999999999999875 45677789999999999987677777 999999999976
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.08 E-value=1.5e-09 Score=121.31 Aligned_cols=215 Identities=17% Similarity=0.203 Sum_probs=147.1
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
...+|.|++. .+|++.++ .+.++|+..|-.+++++||++.|. .|+++.| |..+||
T Consensus 16 ~d~afkPDGs-------qL~lAAg~--------rlliyD~ndG~llqtLKgHKDtVy--cVAys~d--------GkrFAS 70 (1081)
T KOG1538|consen 16 NDIAFKPDGT-------QLILAAGS--------RLLVYDTSDGTLLQPLKGHKDTVY--CVAYAKD--------GKRFAS 70 (1081)
T ss_pred heeEECCCCc-------eEEEecCC--------EEEEEeCCCcccccccccccceEE--EEEEccC--------Cceecc
Confidence 4556777663 23444432 599999999999999999999874 5699998 679999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
|+.|+.|.+|.+...+- | .|+++-.+.|+.|+|-. .|||+|. ...-||..... +...-
T Consensus 71 G~aDK~VI~W~~klEG~----L--------------kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK--~V~K~ 129 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGI----L--------------KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQK--SVSKH 129 (1081)
T ss_pred CCCceeEEEecccccce----e--------------eeccCCeeeEeecCchHHHhhhcch-hhccccChhhh--hHHhh
Confidence 99999999999876542 2 24555668999999977 6899987 56779996542 22222
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC--------------
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD-------------- 524 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~-------------- 524 (634)
. ....|.+.+++.||+|++- -.++||-|=+. .|+.+-.....-|.+.|. -.++..|.-
T Consensus 130 k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-----~gEek~~I~Rpgg~Nspi-wsi~~~p~sg~G~~di~aV~DW~ 202 (1081)
T KOG1538|consen 130 K-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-----NGEEKVKIERPGGSNSPI-WSICWNPSSGEGRNDILAVADWG 202 (1081)
T ss_pred h-hheeEEEeeecCCCcEEEEeccCceEEeecC-----CCCcceEEeCCCCCCCCc-eEEEecCCCCCCccceEEEEecc
Confidence 1 3457899999999999998 56999887753 455554455443332221 122222211
Q ss_pred ---------ccccC--CCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc
Q 047036 525 ---------SHLAG--TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS 571 (634)
Q Consensus 525 ---------~~~~g--~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~ 571 (634)
....| ..+.|.|.+.+.++. | |..+++++++.+.++--+.|.-|
T Consensus 203 qTLSFy~LsG~~Igk~r~L~FdP~CisYf~N-G--Ey~LiGGsdk~L~~fTR~GvrLG 257 (1081)
T KOG1538|consen 203 QTLSFYQLSGKQIGKDRALNFDPCCISYFTN-G--EYILLGGSDKQLSLFTRDGVRLG 257 (1081)
T ss_pred ceeEEEEecceeecccccCCCCchhheeccC-C--cEEEEccCCCceEEEeecCeEEe
Confidence 11112 358899999887652 3 78888888877766655555443
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=9.1e-09 Score=101.80 Aligned_cols=126 Identities=15% Similarity=0.236 Sum_probs=86.8
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE--EEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST--FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l--aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
.|+.++.. +..+..+.-...+ +|.-++|+|+ |+.+ +.|..++.|.+||++. ..+..+.
T Consensus 40 ~l~~~~~~-~~~~~~i~l~~~~-~I~~~~WsP~--------g~~favi~g~~~~~v~lyd~~~--~~i~~~~-------- 99 (194)
T PF08662_consen 40 ELFYLNEK-NIPVESIELKKEG-PIHDVAWSPN--------GNEFAVIYGSMPAKVTLYDVKG--KKIFSFG-------- 99 (194)
T ss_pred EEEEEecC-CCccceeeccCCC-ceEEEEECcC--------CCEEEEEEccCCcccEEEcCcc--cEeEeec--------
Confidence 46777665 4455665543332 1345699998 4554 4466788999999973 3344442
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec----
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT---- 482 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~---- 482 (634)
.....+++++|+| +||+|+.+ |.|++||....+ ...++. |. .++.+++||||++||+ ++
T Consensus 100 ---------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 100 ---------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE-HS-DATDVEWSPDGRYLATATTSPRL 167 (194)
T ss_pred ---------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeeccc-cC-cEEEEEEcCCCCEEEEEEeccce
Confidence 1224578999999 78888754 679999987653 334443 44 4799999999999998 43
Q ss_pred --CCcEEEEEc
Q 047036 483 --DTYLILICT 491 (634)
Q Consensus 483 --D~tIrLWD~ 491 (634)
|+.++||+.
T Consensus 168 ~~dng~~Iw~~ 178 (194)
T PF08662_consen 168 RVDNGFKIWSF 178 (194)
T ss_pred eccccEEEEEe
Confidence 899999995
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.05 E-value=1.3e-09 Score=121.27 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=99.9
Q ss_pred CcEEEEeCCC-CcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc------eEEeccc
Q 047036 333 PGVQQLDIET-GKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG------IVQNMVK 404 (634)
Q Consensus 333 ~TIrlWDleT-GK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~------~Vq~l~g 404 (634)
+.|.++++.. |++-.. +.+--++..|.-..|.|- . .++||.|++|+.|++|-+...+. +-..|.+
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPF---D----~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPF---D----DERLAVATDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCC---C----hHHeeecccCceEEEEEeccCCCCcccCCcceeeec
Confidence 6899999865 654322 111111112233355553 2 47999999999999999876531 1122333
Q ss_pred CCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036 405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T 481 (634)
Q Consensus 405 h~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S 481 (634)
| .-.++++-|.|=- .||++|.|-||+|||+.++. .+..|.||++.|.++++||||+.||+ +
T Consensus 676 h---------------~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVc 739 (1012)
T KOG1445|consen 676 H---------------GEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVC 739 (1012)
T ss_pred c---------------cceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeee
Confidence 3 2346777777743 79999999999999999874 77889999999999999999999999 8
Q ss_pred cCCcEEEEEcc
Q 047036 482 TDTYLILICTL 492 (634)
Q Consensus 482 ~D~tIrLWD~~ 492 (634)
.|++|+++..+
T Consensus 740 KDg~~rVy~Pr 750 (1012)
T KOG1445|consen 740 KDGTLRVYEPR 750 (1012)
T ss_pred cCceEEEeCCC
Confidence 89999999865
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.05 E-value=1.4e-09 Score=112.39 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=118.0
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
.+-+++|.+ +++|+++.++ ++++.||+.|-++.-.. ..|...|+ . ++|+|+. ...|+
T Consensus 174 tsg~WspHH------dgnqv~tt~d-------~tl~~~D~RT~~~~~sI~dAHgq~vr-d-lDfNpnk-------q~~lv 231 (370)
T KOG1007|consen 174 TSGAWSPHH------DGNQVATTSD-------STLQFWDLRTMKKNNSIEDAHGQRVR-D-LDFNPNK-------QHILV 231 (370)
T ss_pred cccccCCCC------ccceEEEeCC-------CcEEEEEccchhhhcchhhhhcceee-e-ccCCCCc-------eEEEE
Confidence 455678864 5677777654 69999999998776655 46766663 4 4999973 35899
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccccc----
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTSMR---- 453 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t~r---- 453 (634)
||++|+.||+||.|.-..+|+++.+|+.+| .||-|+|- ..|.+||.|..|-||-.....
T Consensus 232 t~gDdgyvriWD~R~tk~pv~el~~HsHWv---------------W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~q 296 (370)
T KOG1007|consen 232 TCGDDGYVRIWDTRKTKFPVQELPGHSHWV---------------WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQ 296 (370)
T ss_pred EcCCCccEEEEeccCCCccccccCCCceEE---------------EEEEecCccceEEEecCCCceeEEEeccccccccc
Confidence 999999999999998777899999998775 35556664 479999999999999764310
Q ss_pred -----------------c-------ccccccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEc
Q 047036 454 -----------------Q-------AKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLILICT 491 (634)
Q Consensus 454 -----------------~-------akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~ 491 (634)
+ ...++..|.+.|+++++|.---||.+ |.|+.+.|=.+
T Consensus 297 i~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 297 IEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 12255679999999999998899876 88999877654
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.05 E-value=8.1e-08 Score=100.64 Aligned_cols=156 Identities=8% Similarity=0.130 Sum_probs=93.7
Q ss_pred eEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-C---cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCC
Q 047036 311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-G---KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDN 385 (634)
Q Consensus 311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-G---K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~ 385 (634)
+.++++++.|+++...+ +.|.+||+.+ | +.+..+.++.. . ..++|+|+ ++.+ ++...++
T Consensus 85 i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~-~--~~~~~~p~--------g~~l~v~~~~~~ 148 (330)
T PRK11028 85 ISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIEGLEG-C--HSANIDPD--------NRTLWVPCLKED 148 (330)
T ss_pred EEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeeccCCCc-c--cEeEeCCC--------CCEEEEeeCCCC
Confidence 34456666666665432 6899999964 4 34454444332 1 23489998 4455 5666789
Q ss_pred eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEeccc--cc-ccccc--
Q 047036 386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSKTS--MR-QAKTA-- 458 (634)
Q Consensus 386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~~t--~r-~akt~-- 458 (634)
+|.+||+...+.+ .....+.-.+ ........++++|+| +|++++. +++|++||+.. +. .....
T Consensus 149 ~v~v~d~~~~g~l-~~~~~~~~~~---------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 149 RIRLFTLSDDGHL-VAQEPAEVTT---------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEEEEEECCCCcc-cccCCCceec---------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 9999999864322 1100000000 001113467889998 6777765 99999999862 11 01112
Q ss_pred -ccC---CCCCeEEEEECCCCCEEEEE--cCCcEEEEEcc
Q 047036 459 -FPG---LGSPITHVDVTYDGKWILGT--TDTYLILICTL 492 (634)
Q Consensus 459 -L~G---H~d~ItsVdfSpDGk~LlSS--~D~tIrLWD~~ 492 (634)
++. +.....+|.|+|||++|+++ .+++|.+|++.
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 222 11223469999999999884 47899999975
No 167
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=9.5e-09 Score=112.68 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=92.7
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCc-eEEecccCCC
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSG-IVQNMVKGDS 407 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~-~Vq~l~gh~s 407 (634)
+.+|++||.. |...+.+..|...| ...+|+|| |+.|+.++.+ ..|++||++++.. .+..+.+|
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~~~~~v--~~p~wSPD--------G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-- 249 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNRSSQPL--MSPAWSPD--------GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-- 249 (429)
T ss_pred eEEEEEECCC-CCCceEeccCCCcc--ccceEcCC--------CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--
Confidence 4789999986 55567788887765 34599999 6678777654 4799999987642 22222211
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-E-
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T- 481 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S- 481 (634)
..+++++||| +||.++ .+|.++|| |+.++ ....+.+|...+.+++|||||++|+. +
T Consensus 250 ----------------~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 250 ----------------NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred ----------------cCceeECCCCCEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 1246889999 687764 78877766 55553 34557777778899999999999886 4
Q ss_pred cCCcEEEEEcc
Q 047036 482 TDTYLILICTL 492 (634)
Q Consensus 482 ~D~tIrLWD~~ 492 (634)
.++...||++.
T Consensus 312 ~~g~~~I~~~~ 322 (429)
T PRK01742 312 RSGSPQVYRMS 322 (429)
T ss_pred CCCCceEEEEE
Confidence 46889999864
No 168
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.03 E-value=7.5e-09 Score=110.58 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=131.4
Q ss_pred CCcEEEeee-C-CCeEEEec---CeeeEEEccCCcee--cceeEEEecCCCC-CcccccCcceeeEEeCCcceEEecCCC
Q 047036 255 GVQSLTLGA-L-DNSFLVSD---LGLQVYRNYNRGIH--NKGVSVRFDGGSS-KIGSNSTPKKALLMRGETNMMLMSPLK 326 (634)
Q Consensus 255 ~~~~LavG~-~-D~sfvv~G---~~igV~k~~~~gl~--~~~~~~~~~~~~~-~~g~~fsP~~~mL~~~D~~mllsss~d 326 (634)
.+.+|-+.+ + +..-+++| .+|.||+...+|+. .....+.|.||.- +.-+++.|. -.|.|++++.|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-------A~NVLlsag~D 153 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-------APNVLLSAGSD 153 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-------chhhHhhccCC
Confidence 456788887 4 33444555 59999999888742 2223566777732 133444444 34667777775
Q ss_pred CCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC
Q 047036 327 DGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD 406 (634)
Q Consensus 327 ~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~ 406 (634)
++|.+||+.||+.+-+++ |.+.| ..++|+.| |.++++.+.|+.||+||+|++. +|+.-.+|.
T Consensus 154 ------n~v~iWnv~tgeali~l~-hpd~i--~S~sfn~d--------Gs~l~TtckDKkvRv~dpr~~~-~v~e~~~he 215 (472)
T KOG0303|consen 154 ------NTVSIWNVGTGEALITLD-HPDMV--YSMSFNRD--------GSLLCTTCKDKKVRVIDPRRGT-VVSEGVAHE 215 (472)
T ss_pred ------ceEEEEeccCCceeeecC-CCCeE--EEEEeccC--------CceeeeecccceeEEEcCCCCc-Eeeeccccc
Confidence 699999999999999998 98865 56699988 7899999999999999999864 566655554
Q ss_pred CCccccccccccccCcceEEEEECCCCeEEEEE----CCCcEEEEeccccccc--cccccCCCCCeEEEEECCCCCEEE-
Q 047036 407 SPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGS----LDGKIRLYSKTSMRQA--KTAFPGLGSPITHVDVTYDGKWIL- 479 (634)
Q Consensus 407 s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS----~DGtIRLWD~~t~r~a--kt~L~GH~d~ItsVdfSpDGk~Ll- 479 (634)
+. . + .-+.|-.+|.|++.+ .+..|-|||...+... ...|. -+..|.-=-+-||-+.|.
T Consensus 216 G~-----------k--~-~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 216 GA-----------K--P-ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred CC-----------C--c-ceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEE
Confidence 32 1 1 122345566566544 6789999997654321 12232 233444445567776654
Q ss_pred E-EcCCcEEEEEcc
Q 047036 480 G-TTDTYLILICTL 492 (634)
Q Consensus 480 S-S~D~tIrLWD~~ 492 (634)
+ --|+.||-+.+.
T Consensus 281 ~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 281 CGKGDSSIRYFEIT 294 (472)
T ss_pred EecCCcceEEEEec
Confidence 3 569999999865
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=8.6e-09 Score=111.75 Aligned_cols=203 Identities=16% Similarity=0.211 Sum_probs=136.8
Q ss_pred CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC--CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCC
Q 047036 299 SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE--TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSE 376 (634)
Q Consensus 299 ~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle--TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~ 376 (634)
.++++.|.|... +||.++.| ++++++-+. +...|+.+.-..-. |....|+|+ |+
T Consensus 215 ~I~sv~FHp~~p--------lllvaG~d------~~lrifqvDGk~N~~lqS~~l~~fP--i~~a~f~p~--------G~ 270 (514)
T KOG2055|consen 215 GITSVQFHPTAP--------LLLVAGLD------GTLRIFQVDGKVNPKLQSIHLEKFP--IQKAEFAPN--------GH 270 (514)
T ss_pred CceEEEecCCCc--------eEEEecCC------CcEEEEEecCccChhheeeeeccCc--cceeeecCC--------Cc
Confidence 346777777765 45667775 678887664 44566766555554 456699998 44
Q ss_pred -EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc
Q 047036 377 -STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ 454 (634)
Q Consensus 377 -~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ 454 (634)
.+++++.-..+..||+.+++ +..+. ++ .|+. ..-+..+..++++ +||.++..|-|.|--..++ .
T Consensus 271 ~~i~~s~rrky~ysyDle~ak--~~k~~----~~----~g~e---~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~-e 336 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAK--VTKLK----PP----YGVE---EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK-E 336 (514)
T ss_pred eEEEecccceEEEEeeccccc--ccccc----CC----CCcc---cchhheeEecCCCCeEEEcccCceEEeehhhhh-h
Confidence 89999999999999998754 23331 10 0111 1123445678888 8999999999999998886 4
Q ss_pred ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
..+++. ..+.|.+++||.||+.|++ +.++-|.+||++ ...++..|...-+ ..|..++
T Consensus 337 li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~-----------------v~gts~~ 394 (514)
T KOG2055|consen 337 LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGS-----------------VHGTSLC 394 (514)
T ss_pred hhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecC----CcceEEEEeecCc-----------------cceeeee
Confidence 666665 4557999999999999998 779999999987 4466666652211 1112222
Q ss_pred cccccccccccCCCCceEEEEEcC-CeEEEEeChhhhccc
Q 047036 534 IHGGHFSWVTENGKQERHLVATVG-KFSVIWDFQQVKNSA 572 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~IvtStg-~~viiWdl~~v~~~~ 572 (634)
.++. | .+++++++ +.|-|+|.+...++.
T Consensus 395 ~S~n--------g---~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 395 ISLN--------G---SYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred ecCC--------C---ceEEeccCcceEEEeccchhhccC
Confidence 2222 3 47777665 555599988777643
No 170
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.99 E-value=8.2e-09 Score=112.86 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=106.5
Q ss_pred EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
+..++.+++++++-| ++++||+ .-|++-+-...... .+++|.|. | .+|.|..-+..++.|
T Consensus 375 a~hps~~q~~T~gqd------k~v~lW~--~~k~~wt~~~~d~~---~~~~fhps--------g-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQD------KHVRLWN--DHKLEWTKIIEDPA---ECADFHPS--------G-VVAVGTATGRWFVLD 434 (626)
T ss_pred EcCCChhheeeccCc------ceEEEcc--CCceeEEEEecCce---eEeeccCc--------c-eEEEeeccceEEEEe
Confidence 334556677888765 7999999 35666554444332 24599997 5 899999999999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-cccccccccCCCCCeEEE
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MRQAKTAFPGLGSPITHV 469 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r~akt~L~GH~d~ItsV 469 (634)
..+. .+|+.-. -+.+++++.++|+| +||+||.|+-|.||-+.. +|..+..=.-|+.||++|
T Consensus 435 ~e~~-~lv~~~~----------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 435 TETQ-DLVTIHT----------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL 497 (626)
T ss_pred cccc-eeEEEEe----------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe
Confidence 9873 3333211 14578999999999 899999999999998753 222222222456999999
Q ss_pred EECCCCCEEEE-EcCCcEEEEE
Q 047036 470 DVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 470 dfSpDGk~LlS-S~D~tIrLWD 490 (634)
+||+|++||.+ |-|=-|+.|.
T Consensus 498 DwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 498 DWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eecCCCceEEeccCceEEEEEc
Confidence 99999999999 9999999994
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.6e-09 Score=126.90 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=102.2
Q ss_pred CcEEEEeCCCCcEEEEEec--cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 333 PGVQQLDIETGKIVTEWKF--EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkg--H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
+.|.+||+..=+.-.++-+ -.+. |.+++++ .|. .++++||+.++++-+||+|..+. |-.+..|..
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~e--I~~lsWN--rkv-----qhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~--- 205 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSE--IKCLSWN--RKV-----SHILASGSPSGRAVIWDLRKKKP-IIKLSDTPG--- 205 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCccc--ceEeccc--hhh-----hHHhhccCCCCCceeccccCCCc-ccccccCCC---
Confidence 7999999985333222311 1122 3444554 444 35899999999999999997644 334433221
Q ss_pred ccccccccccCcceEEEEECCCC--eEEEEECCC---cEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcC
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDG---KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTD 483 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG--~IASGS~DG---tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D 483 (634)
...++.+++.|++ +|+++|.|. .|.|||++........|.+|.-.|.+|++++.+ ++|+| ++|
T Consensus 206 ----------~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 206 ----------RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred ----------ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC
Confidence 2457889999998 688888765 799999764333445678999999999999988 88888 899
Q ss_pred CcEEEEEcccccCCCCeee
Q 047036 484 TYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 484 ~tIrLWD~~~~~~~G~~~~ 502 (634)
+.|++|+.. +|+-+-
T Consensus 276 ~~ii~wN~~----tgEvl~ 290 (1049)
T KOG0307|consen 276 NRIICWNPN----TGEVLG 290 (1049)
T ss_pred CCeeEecCC----CceEee
Confidence 999999975 565443
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=1.6e-09 Score=119.44 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=99.3
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC-------CceEEecccCCC
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR-------SGIVQNMVKGDS 407 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~-------~~~Vq~l~gh~s 407 (634)
.+-|.+.- ++..|.+.++ ...|.|. ...+++|+.|++|++|.+... -..+.++.+|..
T Consensus 281 ~k~w~ik~-----tl~s~~d~ir--~l~~~~s--------ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g 345 (577)
T KOG0642|consen 281 TKKWNIKF-----TLRSHDDCIR--ALAFHPS--------EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG 345 (577)
T ss_pred heecceee-----eeecchhhhh--hhhcCCC--------CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC
Confidence 45688753 7888988764 5588876 358999999999999999421 123445555554
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc---------cccccccccCCCCCeEEEEECCCCCE
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS---------MRQAKTAFPGLGSPITHVDVTYDGKW 477 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t---------~r~akt~L~GH~d~ItsVdfSpDGk~ 477 (634)
++-|++.+.+| ++.+|+.||+||+|++.. ......+|.||++.|+.|++|+.-..
T Consensus 346 ---------------PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 346 ---------------PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred ---------------ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 45799999999 899999999999994421 11244578899999999999999999
Q ss_pred EEE-EcCCcEEEEEcc
Q 047036 478 ILG-TTDTYLILICTL 492 (634)
Q Consensus 478 LlS-S~D~tIrLWD~~ 492 (634)
|++ |.|+|+|+|...
T Consensus 411 Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPT 426 (577)
T ss_pred eeeecCCceEEeeccC
Confidence 999 999999999864
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=4.5e-08 Score=114.20 Aligned_cols=189 Identities=16% Similarity=0.254 Sum_probs=121.2
Q ss_pred CCeEEEec--CeeeEEEccCCceecceeEEEecCCCCCcccccCcc----eeeEEeCCcceEEecCCCCCCCCCCcEEEE
Q 047036 265 DNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPK----KALLMRGETNMMLMSPLKDGKPQAPGVQQL 338 (634)
Q Consensus 265 D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~----~~mL~~~D~~mllsss~d~~~~~~~TIrlW 338 (634)
...+++.+ .+|.||.-..+. ....|+.+ . |-+. -.++...|..|+|+++.| +.||+|
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~-----~l~~F~n~-----~-~~~t~Vs~l~liNe~D~aLlLtas~d------GvIRIw 1138 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGR-----LLNGFDNG-----A-FPDTRVSDLELINEQDDALLLTASSD------GVIRIW 1138 (1387)
T ss_pred CceeEEcCCcceEEEEecccCc-----eeccccCC-----C-CCCCccceeeeecccchhheeeeccC------ceEEEe
Confidence 44555555 588998854432 12233322 1 2222 234555788899999886 799999
Q ss_pred eC-----CCCcEEEEEeccCCCcce-----eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCC
Q 047036 339 DI-----ETGKIVTEWKFEKDGTDI-----TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 339 Dl-----eTGK~V~~lkgH~~~V~I-----~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
+- .+-++|.-|.+=++-+.. .|+++-.. ...|+++++-+.||+||+.... +++.+.
T Consensus 1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~--------~G~Ll~tGd~r~IRIWDa~~E~-~~~diP----- 1204 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ--------SGHLLVTGDVRSIRIWDAHKEQ-VVADIP----- 1204 (1387)
T ss_pred cccccccCCceeEEeeccccccCccCCCCCeeeehhhh--------CCeEEecCCeeEEEEEecccce-eEeecc-----
Confidence 73 334677777553331110 24455443 3467777779999999997543 345543
Q ss_pred ccccccccccccCcceEEEEEC-CCC-eEEEEECCCcEEEEeccccc--cccccccCCCCC--eEEEEECCCCCE-EEE-
Q 047036 409 VLHWTQGHQFSRGTNFQCFAST-GDG-SIVVGSLDGKIRLYSKTSMR--QAKTAFPGLGSP--ITHVDVTYDGKW-ILG- 480 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s-~dG-~IASGS~DGtIRLWD~~t~r--~akt~L~GH~d~--ItsVdfSpDGk~-LlS- 480 (634)
|.+...++++..+ ..| .||.|-.||.||+||.+... ........|.++ |.++.|-+.|-- |+|
T Consensus 1205 ---------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1205 ---------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred ---------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee
Confidence 1233334444332 234 79999999999999976421 123455689988 999999998866 888
Q ss_pred EcCCcEEEEEccc
Q 047036 481 TTDTYLILICTLF 493 (634)
Q Consensus 481 S~D~tIrLWD~~~ 493 (634)
|.|+.|.+||+++
T Consensus 1276 s~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRM 1288 (1387)
T ss_pred ccCCeEEEEeccc
Confidence 9999999999873
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=7.9e-09 Score=108.01 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=66.8
Q ss_pred EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE
Q 047036 360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG 438 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG 438 (634)
++.|++- |.+||+|+.||+|-+||+-+.+ +...|.+|.- +++|+|.|++| .|+++
T Consensus 28 ~~~Fs~~--------G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~---------------pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 28 CCQFSRW--------GDYLAVGCANGRVVIYDFDTFR-IARMLSAHVR---------------PITSLCWSRDGRKLLTS 83 (405)
T ss_pred eEEeccC--------cceeeeeccCCcEEEEEccccc-hhhhhhcccc---------------ceeEEEecCCCCEeeee
Confidence 4599998 7899999999999999998875 3455655543 56899999999 69999
Q ss_pred ECCCcEEEEeccccccccccccCCCCCeEEEEECC
Q 047036 439 SLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 439 S~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp 473 (634)
|.|..|+|||+..+. +...+. ...||+++.|.|
T Consensus 84 S~D~si~lwDl~~gs-~l~rir-f~spv~~~q~hp 116 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGS-PLKRIR-FDSPVWGAQWHP 116 (405)
T ss_pred cCCceeEEEeccCCC-ceeEEE-ccCccceeeecc
Confidence 999999999998763 333332 334555555544
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=7.7e-08 Score=100.47 Aligned_cols=204 Identities=13% Similarity=0.141 Sum_probs=120.9
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCC--C--cEEEEEeccCCCcceeEEEE-ecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIET--G--KIVTEWKFEKDGTDITMRDI-TNDTKSSQLDPSESTFLGLDDNRLCQ 389 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleT--G--K~V~~lkgH~~~V~I~vvsf-sPd~K~~q~~~g~~laSGS~D~tIkl 389 (634)
.-++.+.+++.| .+|++||.+. | .+-..|+.|.+.| ..| .+ +|. | |+.+|++|.|+||.+
T Consensus 23 ~~GRRmAtCSsD------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si-~rV-~WAhPE--f-----GqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 23 FYGRRMATCSSD------QTVKIWDSTSDSGTWSCTSSWRAHDGSI-WRV-VWAHPE--F-----GQVVATCSYDRTVSI 87 (361)
T ss_pred ccCceeeeccCC------CcEEEEeccCCCCceEEeeeEEecCCcE-EEE-EecCcc--c-----cceEEEEecCCceee
Confidence 334556777776 6999999543 3 4778899999987 355 55 444 4 679999999999999
Q ss_pred EEcCCCCceEEecccCCCCcccccccccc-ccCcceEEEEECCC--C-eEEEEECCCcEEEEecccccccc---------
Q 047036 390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQF-SRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAK--------- 456 (634)
Q Consensus 390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y-~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~ak--------- 456 (634)
|.=.. ..+.+|.. .|..-... -....++.|.|.|. | .+|+++.||++|||+....-.+.
T Consensus 88 WEE~~-----~~~~~~~~---~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 88 WEEQE-----KSEEAHGR---RWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eeecc-----cccccccc---eeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 97531 11222211 01100000 12345677788775 5 69999999999999975421111
Q ss_pred ---ccccCCCCCeEEEEECCCC---CEEEEEcCC------cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEee--cC
Q 047036 457 ---TAFPGLGSPITHVDVTYDG---KWILGTTDT------YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKL--TP 522 (634)
Q Consensus 457 ---t~L~GH~d~ItsVdfSpDG---k~LlSS~D~------tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L--~P 522 (634)
..+..+..+--+|.++|.- .+||.++|. .+.||... ..|+ |.+++ .|
T Consensus 160 ~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~---e~~r----------------Kw~kva~L~ 220 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN---ENGR----------------KWLKVAELP 220 (361)
T ss_pred hccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec---CCcc----------------eeeeehhcC
Confidence 1111466677788888542 346667776 88888632 1221 11111 12
Q ss_pred CCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhh
Q 047036 523 LDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQV 568 (634)
Q Consensus 523 e~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v 568 (634)
.|.-. ...++|.|. . |..-..|++++...|.||+++.+
T Consensus 221 d~~dp-I~di~wAPn-----~--Gr~y~~lAvA~kDgv~I~~v~~~ 258 (361)
T KOG2445|consen 221 DHTDP-IRDISWAPN-----I--GRSYHLLAVATKDGVRIFKVKVA 258 (361)
T ss_pred CCCCc-ceeeeeccc-----c--CCceeeEEEeecCcEEEEEEeec
Confidence 22111 135777776 3 33334565555444999999853
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.95 E-value=2.4e-08 Score=103.49 Aligned_cols=135 Identities=15% Similarity=0.199 Sum_probs=96.4
Q ss_pred CcEEEEeCCCCcE-EEEEec-----cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEec-ccC
Q 047036 333 PGVQQLDIETGKI-VTEWKF-----EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNM-VKG 405 (634)
Q Consensus 333 ~TIrlWDleTGK~-V~~lkg-----H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l-~gh 405 (634)
..|-+|+++.+.. +.++.. |... ++.-+++|-- .+.++++ ..|+++..||+|+-.+. ..+ ..|
T Consensus 144 n~i~l~~l~ess~~vaev~ss~s~e~~~~--ftsg~WspHH------dgnqv~t-t~d~tl~~~D~RT~~~~-~sI~dAH 213 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSSESAEMRHS--FTSGAWSPHH------DGNQVAT-TSDSTLQFWDLRTMKKN-NSIEDAH 213 (370)
T ss_pred CceEEEEcccCcchheeecccccccccce--ecccccCCCC------ccceEEE-eCCCcEEEEEccchhhh-cchhhhh
Confidence 4699999988765 555532 2221 1233556631 1456665 46899999999986542 222 223
Q ss_pred CCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-E
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-T 481 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S 481 (634)
.. .+..+-|+|+- +||+|+.||-|||||.+..+.+.+.|++|..+|++|.|.|-- +.||+ +
T Consensus 214 gq---------------~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 214 GQ---------------RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred cc---------------eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 22 24555667776 699999999999999876566778999999999999999865 45567 9
Q ss_pred cCCcEEEEEcc
Q 047036 482 TDTYLILICTL 492 (634)
Q Consensus 482 ~D~tIrLWD~~ 492 (634)
.|..|.||.+.
T Consensus 279 SDs~V~Lsca~ 289 (370)
T KOG1007|consen 279 SDSAVNLSCAS 289 (370)
T ss_pred CCceeEEEecc
Confidence 99999999875
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.93 E-value=3.2e-09 Score=108.74 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=108.1
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCC----------cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETG----------KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD 383 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTG----------K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~ 383 (634)
...+..+++.+.. ++.+-+||+.+| +++.....|...| ..+.|.+. -..=++|+.
T Consensus 161 ~c~s~~lllaGyE-----sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv--lsldyas~--------~~rGisgga 225 (323)
T KOG0322|consen 161 ACGSTFLLLAGYE-----SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV--LSLDYASS--------CDRGISGGA 225 (323)
T ss_pred cccceEEEEEecc-----CCeEEEEEccCCceeeccccccccccchhhccCcc--eeeeechh--------hcCCcCCCc
Confidence 3445566666664 389999999999 6666677888876 23466654 124567888
Q ss_pred CCeEEEEEcCCC-CceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC
Q 047036 384 DNRLCQWDMRDR-SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG 461 (634)
Q Consensus 384 D~tIklWD~R~~-~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G 461 (634)
+..+-.|.+.-. +.+ + + ... +. ..+.-++-+.+-||+ .+|+++.|+.||+|..++++ +...|.-
T Consensus 226 ~dkl~~~Sl~~s~gsl-q-~---~~e-------~~-lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLky 291 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSL-Q-I---RKE-------IT-LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKY 291 (323)
T ss_pred cccceeeeeccccCcc-c-c---cce-------EE-ecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhh
Confidence 888888887632 111 1 0 000 00 012234455667898 58999999999999999985 8889999
Q ss_pred CCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 462 LGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
|.+.|.+|+||||-..+|+ |.|.+|-||++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999888888 99999999985
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.92 E-value=2.1e-08 Score=105.17 Aligned_cols=190 Identities=14% Similarity=0.180 Sum_probs=126.7
Q ss_pred EEEeee-CCCeEEEec--CeeeEEEccCCceecceeEEEecCC---CC-CcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 258 SLTLGA-LDNSFLVSD--LGLQVYRNYNRGIHNKGVSVRFDGG---SS-KIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~~---~~-~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
...++| +|+..+..| +.|+||....-|.........+.+. +. +..-+|+|.. ..|+..++.-.
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-------~~~~a~gsY~q--- 230 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-------SKTLAVGSYGQ--- 230 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-------Ccceeeecccc---
Confidence 677889 999999988 6899998744442111111111110 00 1333455543 34555565532
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCCCceEEecccCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
.--||-|| .+..+..+-||.++| +-++|.++ |+.+++|+. |-.|-.||+|..+.+|-.|.+|..-
T Consensus 231 -~~giy~~~--~~~pl~llggh~gGv--ThL~~~ed--------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~- 296 (406)
T KOG2919|consen 231 -RVGIYNDD--GRRPLQLLGGHGGGV--THLQWCED--------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGD- 296 (406)
T ss_pred -eeeeEecC--CCCceeeecccCCCe--eeEEeccC--------cCeecccccCCCeEEEEeehhccchhhhhhhhccC-
Confidence 12355555 567889999999997 56799999 789999987 7889999999877666667655321
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT 482 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~ 482 (634)
++-++ -+-+.|.| .||+|+-||.|++||+.+.-.....++.|.+.|++|+++|-=..+|++.
T Consensus 297 ----------TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 297 ----------TNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ----------ccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 11111 12346777 7999999999999998872234567788999999999999955444433
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=3.4e-08 Score=104.17 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=109.0
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----CCCeEEEEE
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL----DDNRLCQWD 391 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS----~D~tIklWD 391 (634)
..+++++.| ++||+||+.+-.. +..|.+|.... ..+|.-..| .+++++|. +|-.|.+||
T Consensus 85 h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~---f~~ld~nck------~~ii~~GtE~~~s~A~v~lwD 149 (376)
T KOG1188|consen 85 HGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTP---FICLDLNCK------KNIIACGTELTRSDASVVLWD 149 (376)
T ss_pred CeeEEeccC------CeEEEEEeecchhhhheeccCCCCCc---ceEeeccCc------CCeEEeccccccCceEEEEEE
Confidence 456777776 7999999987543 45678887432 336665444 46888885 578899999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccc--ccccccCCCCCeE
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQ--AKTAFPGLGSPIT 467 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~--akt~L~GH~d~It 467 (634)
+|...+++..+ .+. +.-.++++.|.|.. .|+|||.||-|-|||+..-.. +....-.|+..|-
T Consensus 150 vR~~qq~l~~~----------~eS----H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~ 215 (376)
T KOG1188|consen 150 VRSEQQLLRQL----------NES----HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIH 215 (376)
T ss_pred eccccchhhhh----------hhh----ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceee
Confidence 99876533332 111 23457899998865 799999999999999865321 2222225889999
Q ss_pred EEEECCCC-CEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036 468 HVDVTYDG-KWILG-TTDTYLILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 468 sVdfSpDG-k~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~ 505 (634)
.+.|.-+| +.|-+ |...+..+|+.. .|.+...|.
T Consensus 216 ~igw~~~~ykrI~clTH~Etf~~~ele----~~~~~~~~~ 251 (376)
T KOG1188|consen 216 LIGWLSKKYKRIMCLTHMETFAIYELE----DGSEETWLE 251 (376)
T ss_pred eeeeecCCcceEEEEEccCceeEEEcc----CCChhhccc
Confidence 99999999 34667 999999999986 455444333
No 180
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.90 E-value=2.9e-07 Score=96.48 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=110.4
Q ss_pred eee-CCCeEEEe----cCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036 261 LGA-LDNSFLVS----DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 261 vG~-~D~sfvv~----G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI 335 (634)
+++ +|+.++.- +.+|.||....+|.... ....+.+.....+.+| ++++++|+.+.... ++|
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~--------~p~g~~l~v~~~~~-----~~v 150 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA-PIQIIEGLEGCHSANI--------DPDNRTLWVPCLKE-----DRI 150 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC-ceeeccCCCcccEeEe--------CCCCCEEEEeeCCC-----CEE
Confidence 444 45544432 36788888755552211 1111212111133334 44555555544432 689
Q ss_pred EEEeCCCCcEEE-------EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CCeEEEEEcCCC-C--ceEEeccc
Q 047036 336 QQLDIETGKIVT-------EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DNRLCQWDMRDR-S--GIVQNMVK 404 (634)
Q Consensus 336 rlWDleTGK~V~-------~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~tIklWD~R~~-~--~~Vq~l~g 404 (634)
++||+.+...+. ....... . .-+.|+|+ ++.++++.. +++|.+||+... + .+++.+..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~-p--~~~~~~pd--------g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAG-P--RHMVFHPN--------QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCC-C--ceEEECCC--------CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 999998743221 1111222 1 23499998 567877765 999999999742 1 22344321
Q ss_pred CCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccccccccccccCC---CCCeEEEEECCCCCEEE
Q 047036 405 GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFPGL---GSPITHVDVTYDGKWIL 479 (634)
Q Consensus 405 h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~GH---~d~ItsVdfSpDGk~Ll 479 (634)
+.. .+.....-..++++|+| +|+++. .++.|.+|++.... ...++.+| +....++.|+|||++|+
T Consensus 220 ~p~---------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~-~~~~~~~~~~~~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 220 MPA---------DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG-SVLSFEGHQPTETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CCC---------cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC-CeEEEeEEEeccccCCceEECCCCCEEE
Confidence 100 00000011357789999 677774 57999999974321 11122222 23456899999999999
Q ss_pred E-E-cCCcEEEEEcc
Q 047036 480 G-T-TDTYLILICTL 492 (634)
Q Consensus 480 S-S-~D~tIrLWD~~ 492 (634)
+ . .+++|.+|++.
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 7 4 48999999864
No 181
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=3.4e-08 Score=109.02 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=141.2
Q ss_pred ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
++.+-++.++.+|+++++| ..|.+||.-.-|.+... .||...| -.+.|-|-. ..++++||..|.-
T Consensus 53 VN~LeWn~dG~lL~SGSDD------~r~ivWd~~~~KllhsI~TgHtaNI--FsvKFvP~t------nnriv~sgAgDk~ 118 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSDD------TRLIVWDPFEYKLLHSISTGHTANI--FSVKFVPYT------NNRIVLSGAGDKL 118 (758)
T ss_pred ecceeecCCCCEEeecCCc------ceEEeecchhcceeeeeecccccce--eEEeeeccC------CCeEEEeccCcce
Confidence 5677788888888888776 57999999888888776 6898854 566898863 3689999999999
Q ss_pred EEEEEcCCCCc------e---EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc
Q 047036 387 LCQWDMRDRSG------I---VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA 455 (634)
Q Consensus 387 IklWD~R~~~~------~---Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a 455 (634)
|++.|+..... + ......|... +--+|+-|++ .+-|+|.||+||=||++....+
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r---------------VKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDR---------------VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhh---------------hhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 99999874211 0 0111122221 2235667777 5889999999999998642222
Q ss_pred ccccc-------CCC--CCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecC---CCCCCCCC-ceeEee
Q 047036 456 KTAFP-------GLG--SPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSG---RMGNKIPA-PRLLKL 520 (634)
Q Consensus 456 kt~L~-------GH~--d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~g---h~~~~~p~-pr~L~L 520 (634)
..... -|. -...++++||.-.++++ +.|-+.||+|.+.. +..|.+ ++. -.|. .|+++-
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~------lks~~s~~~~~~-~pp~~~~cv~y 256 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV------LKSFRSDGTMNT-CPPKDCRCVRY 256 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh------ccCCCCCccccC-CCCcccchhhe
Confidence 22111 111 23578999998877666 88999999995421 111221 111 1122 266654
Q ss_pred -cCCCc-cccCCC----cccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036 521 -TPLDS-HLAGTD----NKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 521 -~Pe~~-~~~g~~----i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
.|.|. ...|+- ...+--.||+ +.+..+|.=.+.+|+++|+.
T Consensus 257 f~p~hlkn~~gn~~~~~~~~t~vtfnp-----NGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 257 FSPGHLKNSQGNLDRYITCCTYVTFNP-----NGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ecCccccCcccccccceeeeEEEEECC-----CCcEEEEeeCCeEEEEEeec
Confidence 47776 221211 1233445664 23678999889999999986
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.89 E-value=1.4e-07 Score=100.33 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=108.9
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-CCCcceeEEEEecCCCCCCCCCCCEEEE-Ee
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-KDGTDITMRDITNDTKSSQLDPSESTFL-GL 382 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-~~~V~I~vvsfsPd~K~~q~~~g~~laS-GS 382 (634)
+-|...+...=.++.|+..=. ..|+++|+.+-|++.++..- .+. -.+.+++|..- +.++|- ++
T Consensus 85 ~fpt~IL~VrmNr~RLvV~Le-------e~IyIydI~~MklLhTI~t~~~n~--~gl~AlS~n~~------n~ylAyp~s 149 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCLE-------ESIYIYDIKDMKLLHTIETTPPNP--KGLCALSPNNA------NCYLAYPGS 149 (391)
T ss_pred ecCCceEEEEEccceEEEEEc-------ccEEEEecccceeehhhhccCCCc--cceEeeccCCC------CceEEecCC
Confidence 345544444444555554433 24999999999999887543 121 13557777632 234443 33
Q ss_pred C-CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCc-EEEEeccccccccccc
Q 047036 383 D-DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGK-IRLYSKTSMRQAKTAF 459 (634)
Q Consensus 383 ~-D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGt-IRLWD~~t~r~akt~L 459 (634)
. -+.|.+||+-.-+ .+.++..|.+ .+.|+||+++| .||+||..|| ||+|.+..++ ..+.|
T Consensus 150 ~t~GdV~l~d~~nl~-~v~~I~aH~~---------------~lAalafs~~G~llATASeKGTVIRVf~v~~G~-kl~eF 212 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQ-PVNTINAHKG---------------PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-KLYEF 212 (391)
T ss_pred CCCceEEEEEcccce-eeeEEEecCC---------------ceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-Eeeee
Confidence 3 5889999987643 3566666654 46899999999 7999999997 6999998874 55555
Q ss_pred c-CCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 460 P-GLG-SPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 460 ~-GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
. |-. -.|.+|+||||+++|++ |.-.||.++-+.
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 5 322 35899999999999998 788999999754
No 183
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.88 E-value=5.1e-08 Score=109.84 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=125.8
Q ss_pred EEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCC-CCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEE
Q 047036 258 SLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGS-SKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQ 336 (634)
Q Consensus 258 ~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~-~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIr 336 (634)
.||+|..++.+.+.+..++-|+ ....+.||. ++++.+|.-.+. ..++|++++.| ..||
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~----------~v~el~GH~DWIrsl~f~~~~~------~~~~laS~SQD-----~yIR 219 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFA----------RVAELEGHTDWIRSLAFARLGG------DDLLLASSSQD-----RYIR 219 (764)
T ss_pred EEEecCcceEEEEeccCCccee----------EEEEeeccchhhhhhhhhccCC------CcEEEEecCCc-----eEEE
Confidence 5666665555544443344333 123566774 457888774432 24445554433 8999
Q ss_pred EEeCCCCc---------------------EEEEE----------eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036 337 QLDIETGK---------------------IVTEW----------KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN 385 (634)
Q Consensus 337 lWDleTGK---------------------~V~~l----------kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~ 385 (634)
||.+.-+- +..++ .||.++| ..+.++|. +..|+|+|.|+
T Consensus 220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV--~sv~W~p~--------~~~LLSASaDk 289 (764)
T KOG1063|consen 220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV--YSVWWHPE--------GLDLLSASADK 289 (764)
T ss_pred EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce--EEEEEccc--------hhhheecccCc
Confidence 99875433 22233 3999998 46699998 57899999999
Q ss_pred eEEEEEcCCCCce---EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc--cccccc
Q 047036 386 RLCQWDMRDRSGI---VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR--QAKTAF 459 (634)
Q Consensus 386 tIklWD~R~~~~~---Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r--~akt~L 459 (634)
++.+|-+.....+ +-.+..- + -...-|..+-+++++ .|++-|.-|-.|||-..... .+...+
T Consensus 290 smiiW~pd~~tGiWv~~vRlGe~---------g---g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 290 SMIIWKPDENTGIWVDVVRLGEV---------G---GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred ceEEEecCCccceEEEEEEeecc---------c---ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 9999998754221 1112100 0 011236677778888 67888999999999832211 122345
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
.||.+.|++|++.|.|.||+| |.|.|-||+-
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa 389 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFA 389 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeec
Confidence 699999999999999999999 9999999974
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.2e-07 Score=96.51 Aligned_cols=205 Identities=18% Similarity=0.220 Sum_probs=131.2
Q ss_pred ccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC---------CCc-EEEEEeccCCCcceeEEEEecCCCCCC
Q 047036 302 GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE---------TGK-IVTEWKFEKDGTDITMRDITNDTKSSQ 371 (634)
Q Consensus 302 g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle---------TGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q 371 (634)
..+++|.+..|+ ++..+ ++|.+..+. -|| .+-.+++|...| .-++|..
T Consensus 15 ~qa~sp~~~~l~--------agn~~------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpi--y~~~f~d------ 72 (325)
T KOG0649|consen 15 AQAISPSKQYLF--------AGNLF------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPI--YYLAFHD------ 72 (325)
T ss_pred HHhhCCcceEEE--------EecCC------CeEEEEEehhhhccccCCCCCcceeeccccCCCe--eeeeeeh------
Confidence 445677776544 23222 566666542 233 455679999875 4557773
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc----ccccccCcceEEEEECCC-CeEEEEECCCcEEE
Q 047036 372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ----GHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRL 446 (634)
Q Consensus 372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~----g~~y~~~~~fssva~s~d-G~IASGS~DGtIRL 446 (634)
..|++|++ +.|+=|--+.-.+ .+ |..+. |-. ...-..-..+.++...|. +.|..++.|+.|.-
T Consensus 73 ----~~Lls~gd-G~V~gw~W~E~~e---s~--~~K~l--we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 73 ----DFLLSGGD-GLVYGWEWNEEEE---SL--ATKRL--WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQ 140 (325)
T ss_pred ----hheeeccC-ceEEEeeehhhhh---hc--cchhh--hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEE
Confidence 47888776 9999998663211 00 01100 100 001112334677777765 47888889999999
Q ss_pred EeccccccccccccCCCCCeEEEEE-CCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036 447 YSKTSMRQAKTAFPGLGSPITHVDV-TYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD 524 (634)
Q Consensus 447 WD~~t~r~akt~L~GH~d~ItsVdf-SpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~ 524 (634)
||+.+++ .+..+.||+|.|.+|.- +.+|+ |+| +.|+++||||++ ++++.+..+-.-. |-+|+ |.-
T Consensus 141 ~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~k----t~k~v~~ie~yk~-----~~~lR--p~~ 207 (325)
T KOG0649|consen 141 VDLEDGR-IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTK----TQKHVSMIEPYKN-----PNLLR--PDW 207 (325)
T ss_pred EEecCCE-EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecc----ccceeEEeccccC-----hhhcC--ccc
Confidence 9999996 88999999999999999 66665 566 999999999986 6777765542221 11222 221
Q ss_pred ccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036 525 SHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 525 ~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
. +++.| ...+|.|+|.+.|+-+-+|+|..
T Consensus 208 g-------~wiga-------la~~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 208 G-------KWIGA-------LAVNEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred C-------ceeEE-------EeccCceEEecCCCceeEEeccC
Confidence 1 12222 12347899999999999999973
No 185
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.85 E-value=6.5e-07 Score=93.98 Aligned_cols=155 Identities=15% Similarity=0.162 Sum_probs=113.8
Q ss_pred EEEeee-CCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeC-CcceEEecCCCCCCCCCCcE
Q 047036 258 SLTLGA-LDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRG-ETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 258 ~LavG~-~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~~~~~~~TI 335 (634)
.++|-. .|+-.||--++|-||.-.+ +++ .+..+.+. -.|++.+.... ..+++|+-|.-+ -+.|
T Consensus 97 I~~V~l~r~riVvvl~~~I~VytF~~-n~k---~l~~~et~-------~NPkGlC~~~~~~~k~~LafPg~k----~Gqv 161 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVVLENKIYVYTFPD-NPK---LLHVIETR-------SNPKGLCSLCPTSNKSLLAFPGFK----TGQV 161 (346)
T ss_pred eeeEEEcCCeEEEEecCeEEEEEcCC-Chh---heeeeecc-------cCCCceEeecCCCCceEEEcCCCc----cceE
Confidence 788888 7888899999999998543 222 23333332 13555444332 235677777753 3899
Q ss_pred EEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe-EEEEEcCCCCceEEecccCCCCcccc
Q 047036 336 QQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR-LCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 336 rlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t-IklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++.|+..-+. -.....|... |.+++++-+ |..+||||..|| ||+||.+++.. ++.+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~--Iacv~Ln~~--------Gt~vATaStkGTLIRIFdt~~g~~-l~E~RR-------- 222 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSD--IACVALNLQ--------GTLVATASTKGTLIRIFDTEDGTL-LQELRR-------- 222 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCc--eeEEEEcCC--------ccEEEEeccCcEEEEEEEcCCCcE-eeeeec--------
Confidence 9999986554 3667899986 567788877 789999999998 58999999764 577642
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t 451 (634)
|. ....+.|++|||++ +||++|..|||++|.+..
T Consensus 223 --G~---d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 223 --GV---DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred --CC---chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 21 23468999999999 899999999999999764
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=3.7e-07 Score=97.22 Aligned_cols=180 Identities=11% Similarity=0.236 Sum_probs=126.6
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.+++.+...+..|.++...+.. -.|.++. +.|+.+..+. |+++|++.=+ ++.++.. |
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~I---L~VrmNr----------~RLvV~Lee~-IyIydI~~Mk-lLhTI~t-------~ 125 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSI---LAVRMNR----------KRLVVCLEES-IYIYDIKDMK-LLHTIET-------T 125 (391)
T ss_pred ceEEEEEcccCceEEEEecCCce---EEEEEcc----------ceEEEEEccc-EEEEecccce-eehhhhc-------c
Confidence 68999999999999998887753 2336654 3677777666 9999998532 3444421 0
Q ss_pred ccccccccCcceEEEEECCCC-eEEE-EE-CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc-EE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVV-GS-LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY-LI 487 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IAS-GS-~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t-Ir 487 (634)
- .....+.++.++..+ +||- +| .-|.|.|||+.+.+ ...++..|.++|-+|+|||||..||+ |..+| ||
T Consensus 126 ~-----~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 126 P-----PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred C-----CCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 0 011124445555555 7875 33 46999999998874 78899999999999999999999999 77776 78
Q ss_pred EEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEE-EEEcCCeEEEEeCh
Q 047036 488 LICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHL-VATVGKFSVIWDFQ 566 (634)
Q Consensus 488 LWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~I-vtStg~~viiWdl~ 566 (634)
++.+. +|+.+..|..-.- | .+| ..+.|++. + +.| ++|.-.+|-|+-|+
T Consensus 200 Vf~v~----~G~kl~eFRRG~~---~----~~I---------ySL~Fs~d--------s---~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 200 VFSVP----EGQKLYEFRRGTY---P----VSI---------YSLSFSPD--------S---QFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEEcC----CccEeeeeeCCce---e----eEE---------EEEEECCC--------C---CeEEEecCCCeEEEEEec
Confidence 88874 7888887875441 1 110 24677776 2 355 45677889999998
Q ss_pred hhhcc
Q 047036 567 QVKNS 571 (634)
Q Consensus 567 ~v~~~ 571 (634)
++...
T Consensus 249 ~~~~~ 253 (391)
T KOG2110|consen 249 KVSNN 253 (391)
T ss_pred ccccC
Confidence 87743
No 187
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.84 E-value=4.1e-07 Score=99.86 Aligned_cols=143 Identities=14% Similarity=0.213 Sum_probs=105.5
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE---EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE---WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~---lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
-|.++|++.+. +.++.|++++|-++++ |+.+...- +.+++|.++ ..+++|-+++.|.+|+
T Consensus 211 td~nliit~Gk-------~H~~Fw~~~~~~l~k~~~~fek~ekk~-Vl~v~F~en---------gdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 211 TDPNLIITCGK-------GHLYFWTLRGGSLVKRQGIFEKREKKF-VLCVTFLEN---------GDVITGDSGGNILIWS 273 (626)
T ss_pred CCCcEEEEeCC-------ceEEEEEccCCceEEEeeccccccceE-EEEEEEcCC---------CCEEeecCCceEEEEe
Confidence 45678888876 5799999999876654 77777643 456699986 4799999999999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccc-------------
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTA------------- 458 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~------------- 458 (634)
.++-+ +.+....|... +.|++.-.+|.|+||+.|..|-+||-.=.+...+.
T Consensus 274 ~~~~~-~~k~~~aH~gg---------------v~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e 337 (626)
T KOG2106|consen 274 KGTNR-ISKQVHAHDGG---------------VFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE 337 (626)
T ss_pred CCCce-EEeEeeecCCc---------------eEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence 97643 33333345443 46788889999999999999999993210000011
Q ss_pred --------------------------ccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 459 --------------------------FPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 459 --------------------------L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
..||++..++++.+|+-..+++ +.|+.++||+
T Consensus 338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 1268888888888888888887 8888888887
No 188
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.83 E-value=1.7e-08 Score=109.65 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=135.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.++++|-. |.-+.-++-|.. | .-+.|-|- .=+|++++.-+-++--|+.+++ +|..+.--..
T Consensus 191 ~y~yvYD~~-GtElHClk~~~~-v--~rLeFLPy--------HfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G----- 252 (545)
T KOG1272|consen 191 KYVYVYDNN-GTELHCLKRHIR-V--ARLEFLPY--------HFLLVAASEAGFLKYQDVSTGK-LVASIRTGAG----- 252 (545)
T ss_pred ceEEEecCC-CcEEeehhhcCc-h--hhhcccch--------hheeeecccCCceEEEeechhh-hhHHHHccCC-----
Confidence 579999955 888888888865 2 34588885 4588899999999999998864 4444421111
Q ss_pred ccccccccCcceEEEEECCC-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
....++-+|- .-|-+|...|+|-||..... .....+-.|..+|.+|+|.++|+|+|+ +.|..|+|||
T Consensus 253 ----------~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 253 ----------RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred ----------ccchhhcCCccceEEEcCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 1223333443 36789999999999998764 466667789999999999999999999 9999999999
Q ss_pred cccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhc
Q 047036 491 TLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKN 570 (634)
Q Consensus 491 ~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~ 570 (634)
++. -..+.++.. |-++ ..++|+- .-.++.|.|++|-||- ..+.
T Consensus 322 lR~----~~ql~t~~t---------------p~~a----~~ls~Sq------------kglLA~~~G~~v~iw~--d~~~ 364 (545)
T KOG1272|consen 322 LRN----FYQLHTYRT---------------PHPA----SNLSLSQ------------KGLLALSYGDHVQIWK--DALK 364 (545)
T ss_pred ecc----ccccceeec---------------CCCc----ccccccc------------ccceeeecCCeeeeeh--hhhc
Confidence 873 111111111 1111 2233332 2378889999999993 3333
Q ss_pred ccccccccccCCcceeeEEEeccCCCeeeeccc
Q 047036 571 SAHECYRNQQGLKSCYCYKIVLKDESIVESRFM 603 (634)
Q Consensus 571 ~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~ 603 (634)
+.. +...+|---+....|.+++|.
T Consensus 365 ~s~---------~~~~pYm~H~~~~~V~~l~Fc 388 (545)
T KOG1272|consen 365 GSG---------HGETPYMNHRCGGPVEDLRFC 388 (545)
T ss_pred CCC---------CCCcchhhhccCcccccceec
Confidence 322 223477777777888888884
No 189
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.7e-07 Score=104.47 Aligned_cols=237 Identities=11% Similarity=0.175 Sum_probs=147.0
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI 398 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~ 398 (634)
.|.+|+.| +|||+|-+.||+||+++..... |.+++|+|.++ ...||.+-..+ +.+-++.-+..+
T Consensus 414 wlasGsdD------GtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~------~~vLAvA~~~~-~~ivnp~~G~~~ 477 (733)
T KOG0650|consen 414 WLASGSDD------GTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSD------LCVLAVAVGEC-VLIVNPIFGDRL 477 (733)
T ss_pred eeeecCCC------CcEEEEEeecceEEEEEeecce---eEEEEecCCCC------ceeEEEEecCc-eEEeCccccchh
Confidence 34455544 8999999999999999887652 56779999854 23555555555 888888765221
Q ss_pred EE-----ecccC---C---CCcccccccc----------ccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccc
Q 047036 399 VQ-----NMVKG---D---SPVLHWTQGH----------QFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMR 453 (634)
Q Consensus 399 Vq-----~l~gh---~---s~V~~~~~g~----------~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r 453 (634)
.. .|... . ..|..|+... ...+...+..+.....| |||+...+ ..|-|.++...
T Consensus 478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~- 556 (733)
T KOG0650|consen 478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR- 556 (733)
T ss_pred hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc-
Confidence 11 11111 1 1244566431 11133455667777888 88886554 56788887643
Q ss_pred cccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 454 QAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 454 ~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
.....|.--.+.|..+.|.|---+|+.++..+|||+|+. ++..+..+. +..|-|. .++
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~----kqelvKkL~-------tg~kwiS-----------~ms 614 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS----KQELVKKLL-------TGSKWIS-----------SMS 614 (733)
T ss_pred cccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh----HHHHHHHHh-------cCCeeee-----------eee
Confidence 233345444567999999999999999999999999975 222221111 1001110 111
Q ss_pred cccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc-cc-CC
Q 047036 534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF-AV-TD 611 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f-~~-~~ 611 (634)
-+|. | +..|+++-++-++.+|+. -..++|+ .++.|...|.+|.| |..| -| ++
T Consensus 615 ihp~--------G--Dnli~gs~d~k~~WfDld----lsskPyk-----------~lr~H~~avr~Va~-H~ryPLfas~ 668 (733)
T KOG0650|consen 615 IHPN--------G--DNLILGSYDKKMCWFDLD----LSSKPYK-----------TLRLHEKAVRSVAF-HKRYPLFASG 668 (733)
T ss_pred ecCC--------C--CeEEEecCCCeeEEEEcc----cCcchhH-----------Hhhhhhhhhhhhhh-ccccceeeee
Confidence 1222 3 468888999999999987 2233454 45666667777888 9988 22 34
Q ss_pred CCCCCEEEE
Q 047036 612 SPEAPLVVA 620 (634)
Q Consensus 612 ~~~~~iivA 620 (634)
+.|..|||-
T Consensus 669 sdDgtv~Vf 677 (733)
T KOG0650|consen 669 SDDGTVIVF 677 (733)
T ss_pred cCCCcEEEE
Confidence 445677663
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=3.9e-09 Score=116.21 Aligned_cols=130 Identities=18% Similarity=0.266 Sum_probs=98.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
.-||..+++ ++|.||++-|+ .+.|+.+ |++|+|||+|-.|.+||+-.. +++..+.
T Consensus 35 ~~lrrL~lE-----~eL~GH~GCVN--~LeWn~d--------G~lL~SGSDD~r~ivWd~~~~-KllhsI~--------- 89 (758)
T KOG1310|consen 35 TWLRRLDLE-----AELTGHTGCVN--CLEWNAD--------GELLASGSDDTRLIVWDPFEY-KLLHSIS--------- 89 (758)
T ss_pred HHHhhcchh-----hhhccccceec--ceeecCC--------CCEEeecCCcceEEeecchhc-ceeeeee---------
Confidence 467777766 48999999875 5588887 799999999999999999854 4444442
Q ss_pred ccccccccCcceEEEEECC---CCeEEEEECCCcEEEEeccc---------cccccccccCCCCCeEEEEECCCC-CEEE
Q 047036 413 TQGHQFSRGTNFQCFASTG---DGSIVVGSLDGKIRLYSKTS---------MRQAKTAFPGLGSPITHVDVTYDG-KWIL 479 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~---dG~IASGS~DGtIRLWD~~t---------~r~akt~L~GH~d~ItsVdfSpDG-k~Ll 479 (634)
+||. .++.|+-|-| +..|++|+.|..|||||+.. +........-|.+.|.-|+.-|+| ..+.
T Consensus 90 -TgHt----aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw 164 (758)
T KOG1310|consen 90 -TGHT----ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW 164 (758)
T ss_pred -cccc----cceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEE
Confidence 2332 2455666655 33689999999999999874 111222345799999999999999 5666
Q ss_pred E-EcCCcEEEEEcc
Q 047036 480 G-TTDTYLILICTL 492 (634)
Q Consensus 480 S-S~D~tIrLWD~~ 492 (634)
+ +.|++||-+|++
T Consensus 165 sasEDGtirQyDiR 178 (758)
T KOG1310|consen 165 SASEDGTIRQYDIR 178 (758)
T ss_pred EecCCcceeeeccc
Confidence 6 999999999986
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.83 E-value=9.7e-10 Score=125.22 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=98.3
Q ss_pred CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036 343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT 422 (634)
Q Consensus 343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~ 422 (634)
-|.|+.+.||.+.| .++.|... |..|++|++|.-+++|-+.+..| ..++.||+..+
T Consensus 180 mk~ikrLlgH~naV--yca~fDrt--------g~~Iitgsdd~lvKiwS~et~~~-lAs~rGhs~di------------- 235 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAV--YCAIFDRT--------GRYIITGSDDRLVKIWSMETARC-LASCRGHSGDI------------- 235 (1113)
T ss_pred HHHHHHHHhhhhhe--eeeeeccc--------cceEeecCccceeeeeeccchhh-hccCCCCcccc-------------
Confidence 35667889999987 45577765 78999999999999999988766 46777877654
Q ss_pred ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
+-+|.+.+. .||+||.|..||+|-+..+ .....|.||++.|++|+|||=- .++.|+++++||.+
T Consensus 236 --tdlavs~~n~~iaaaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 236 --TDLAVSSNNTMIAAASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred --chhccchhhhhhhhcccCceEEEEecCCC-chHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence 333445455 7999999999999999887 4778999999999999999975 33889999999987
No 192
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=7.4e-08 Score=104.65 Aligned_cols=147 Identities=17% Similarity=0.283 Sum_probs=113.4
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR 393 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R 393 (634)
+.+++.|+..+.. +.|+|.-..|++.|.+++-... +.-.+|+.+ +..|++.+.++-|.+||+|
T Consensus 312 Shd~~fia~~G~~------G~I~lLhakT~eli~s~KieG~---v~~~~fsSd--------sk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 312 SHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEGV---VSDFTFSSD--------SKELLASGGTGEVYVWNLR 374 (514)
T ss_pred cCCCCeEEEcccC------ceEEeehhhhhhhhheeeeccE---EeeEEEecC--------CcEEEEEcCCceEEEEecC
Confidence 4677777777764 7899999999999999987643 456688877 5678888888999999999
Q ss_pred CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc-----cccccccCCCCCeE
Q 047036 394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR-----QAKTAFPGLGSPIT 467 (634)
Q Consensus 394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r-----~akt~L~GH~d~It 467 (634)
...+ +..+.. +| .+.-+++|.+.+| +||+||.-|.|-|||..+.. +...++..+.-.|+
T Consensus 375 ~~~~-~~rf~D---------~G-----~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 375 QNSC-LHRFVD---------DG-----SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred Ccce-EEEEee---------cC-----ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 8744 444431 11 1223678899999 89999999999999976421 24456667888999
Q ss_pred EEEECCCCCEEEE---EcCCcEEEEEcc
Q 047036 468 HVDVTYDGKWILG---TTDTYLILICTL 492 (634)
Q Consensus 468 sVdfSpDGk~LlS---S~D~tIrLWD~~ 492 (634)
+|.|+||++.||- ..++.+||..+-
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEecc
Confidence 9999999999874 468999999864
No 193
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=5.6e-08 Score=107.55 Aligned_cols=196 Identities=9% Similarity=0.134 Sum_probs=129.1
Q ss_pred CeeeEEEc---cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC------CCC
Q 047036 273 LGLQVYRN---YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI------ETG 343 (634)
Q Consensus 273 ~~igV~k~---~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl------eTG 343 (634)
.+|.+|.. ....-.....+.+|.+|. -|+-.+.+...+..+++++-| ++|+.|.+ ...
T Consensus 316 ~~lk~WnLqk~~~s~~~~~epi~tfraH~-------gPVl~v~v~~n~~~~ysgg~D------g~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 316 GTLKLWNLQKAKKSAEKDVEPILTFRAHE-------GPVLCVVVPSNGEHCYSGGID------GTIRCWNLPPNQDPDDS 382 (577)
T ss_pred cchhhhhhcccCCccccceeeeEEEeccc-------CceEEEEecCCceEEEeeccC------ceeeeeccCCCCCcccc
Confidence 57777876 332211223566777772 355556666677778888765 79999932 222
Q ss_pred ----cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCc----ccccc
Q 047036 344 ----KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPV----LHWTQ 414 (634)
Q Consensus 344 ----K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V----~~~~~ 414 (634)
-+...|.||++.| +.+++++. ..+|+++|.|+|+++|.+.....+ ...-..|.-|. ..|.-
T Consensus 383 ~dp~vl~~~l~Ghtdav--w~l~~s~~--------~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 383 YDPSVLSGTLLGHTDAV--WLLALSST--------KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred cCcchhccceeccccce--eeeeeccc--------ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence 2345689999986 56788876 468999999999999998753221 00000111000 00000
Q ss_pred ccccc------------------------------cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCC
Q 047036 415 GHQFS------------------------------RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLG 463 (634)
Q Consensus 415 g~~y~------------------------------~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~ 463 (634)
.|.++ ....+.-+...|.+ ...++..|+.||++|..++. .......|-
T Consensus 453 a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~a~~ 531 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMVAHK 531 (577)
T ss_pred HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc-cchheeecc
Confidence 11111 01122233344544 78899999999999988874 667777899
Q ss_pred CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 464 SPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+.+++++|-|+|-+|++ +.|+.++||.+.
T Consensus 532 ~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 532 DSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ceecceeecCCCceEEeecCCceeehhhcc
Confidence 99999999999999999 999999999864
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.2e-08 Score=109.46 Aligned_cols=111 Identities=24% Similarity=0.328 Sum_probs=82.2
Q ss_pred EEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036 425 QCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 425 ssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
-++||+++| .||+|+.||++|+|+...+. ....+..|...|..|+|||||+.|++ +.| ..++|++. +|.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 578999997 79999999999999976653 44456689999999999999999999 888 99999986 453322
Q ss_pred eecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceE-EEEEc--CCeEEEEeC
Q 047036 503 GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERH-LVATV--GKFSVIWDF 565 (634)
Q Consensus 503 gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~-IvtSt--g~~viiWdl 565 (634)
+++|. .++..|..++|+.+ +.++.+ |+++. ++.|+.|++
T Consensus 222 ----------------~~t~~-----~k~~~~~~cRF~~d---~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 222 ----------------RKTPF-----SKDEMFSSCRFSVD---NAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred ----------------hcCCc-----ccchhhhhceeccc---CCCceEEEEEecCCCCceeEEEe
Confidence 12232 24678999999853 223444 45543 566776554
No 195
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=1e-06 Score=96.97 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=82.4
Q ss_pred CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCC--eEEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDN--RLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~--tIklWD~R~~~~~Vq~l~gh~s 407 (634)
..|++||+.+|+. +..+.+|.. ...|+|| |..|+ +.+.++ .|++||+.++.. ..+..+.
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~-----~~~~SPD--------G~~La~~~~~~g~~~I~~~d~~tg~~--~~lt~~~- 286 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG-----APAFSPD--------GSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGR- 286 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC-----CeEECCC--------CCEEEEEEcCCCCcEEEEEECCCCCE--EEccCCC-
Confidence 5799999999964 444556543 2489999 45555 444444 599999987542 3332111
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECC-CcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-GKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-GtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
......+++||| +||..+.+ |..+|| |+.++. ...+..++..+.+++|||||++|+. +.
T Consensus 287 --------------~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 287 --------------SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred --------------CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 123456889999 68777754 455555 655542 2344445556778999999999987 54
Q ss_pred C---CcEEEEEcc
Q 047036 483 D---TYLILICTL 492 (634)
Q Consensus 483 D---~tIrLWD~~ 492 (634)
+ ..|.+||+.
T Consensus 351 ~~g~~~I~~~dl~ 363 (429)
T PRK03629 351 NGGQQHIAKQDLA 363 (429)
T ss_pred cCCCceEEEEECC
Confidence 3 357778864
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.80 E-value=1.5e-08 Score=112.91 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=105.2
Q ss_pred EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036 345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF 424 (634)
Q Consensus 345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f 424 (634)
-|--+-+|.+.| +-..|+|- + ..+||+||.|..|+||-+-.+- -+.|. +-..++ |+ .+..+
T Consensus 71 ~i~~l~~H~d~V--tDl~FspF---~----D~LLAT~S~D~~VKiW~lp~g~--~q~LS-ape~~~----g~---~~~~v 131 (1012)
T KOG1445|consen 71 DIGILAAHGDQV--TDLGFSPF---A----DELLATCSRDEPVKIWKLPRGH--SQKLS-APEIDV----GG---GNVIV 131 (1012)
T ss_pred ccceeeccccee--eccCcccc---c----hhhhhcccCCCeeEEEecCCCc--ccccC-Ccceee----cC---CceEE
Confidence 455678999976 34578874 2 4799999999999999976221 13341 001110 11 23456
Q ss_pred EEEEECC--CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036 425 QCFASTG--DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK 501 (634)
Q Consensus 425 ssva~s~--dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~ 501 (634)
-|+-|.| ||.+|+|+. |+++|||+.+. +....|.+|++-|.+.++|-||+.|++ ..|+.|||+|.+ ..++.+
T Consensus 132 E~l~fHpTaDgil~s~a~-g~v~i~D~stq-k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPR---a~~~pi 206 (1012)
T KOG1445|consen 132 ECLRFHPTADGILASGAH-GSVYITDISTQ-KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPR---ASMEPI 206 (1012)
T ss_pred EEeecccCcCceEEeccC-ceEEEEEcccC-ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCc---cCCCcc
Confidence 7777754 778888876 89999999886 466788899999999999999999999 558999999987 478888
Q ss_pred eeecCCCC
Q 047036 502 TGFSGRMG 509 (634)
Q Consensus 502 ~gF~gh~~ 509 (634)
+..++|-+
T Consensus 207 Q~te~H~~ 214 (1012)
T KOG1445|consen 207 QTTEGHGG 214 (1012)
T ss_pred cccccccc
Confidence 88888876
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.79 E-value=2.9e-08 Score=106.38 Aligned_cols=131 Identities=13% Similarity=0.215 Sum_probs=97.0
Q ss_pred EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC---C--ceE---EecccCCCCccccccccccc
Q 047036 348 EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR---S--GIV---QNMVKGDSPVLHWTQGHQFS 419 (634)
Q Consensus 348 ~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~---~--~~V---q~l~gh~s~V~~~~~g~~y~ 419 (634)
.|-.|+. +..+.|.+.++ ..+|||+.|.-|++|-+... + ..| ..|.+|.
T Consensus 9 ~wH~~~p---v~s~dfq~n~~-------~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~------------- 65 (434)
T KOG1009|consen 9 SWHDHEP---VYSVDFQKNSL-------NKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT------------- 65 (434)
T ss_pred EecCCCc---eEEEEeccCcc-------cceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-------------
Confidence 3545553 45668877632 38999999999999987642 1 112 1222222
Q ss_pred cCcceEEEEECCCC-eEEEEECCCcEEEEecc--------c-----c--ccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT--------S-----M--RQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~--------t-----~--r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
-.+.++-|+|+| .||||+.+|.|-||-.. + . ...+..+.||.+.|..++++||+.+|++ ++
T Consensus 66 --~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 66 --RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred --ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 235788999999 89999999999999754 1 0 0123467799999999999999999999 99
Q ss_pred CCcEEEEEcccccCCCCeeeeecCC
Q 047036 483 DTYLILICTLFSDKDGKTKTGFSGR 507 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~~gF~gh 507 (634)
|+++++||+. .|+...++..|
T Consensus 144 dns~~l~Dv~----~G~l~~~~~dh 164 (434)
T KOG1009|consen 144 DNSVRLWDVH----AGQLLAILDDH 164 (434)
T ss_pred cceEEEEEec----cceeEeecccc
Confidence 9999999996 67777777665
No 198
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.79 E-value=1.9e-07 Score=97.02 Aligned_cols=185 Identities=12% Similarity=0.200 Sum_probs=116.0
Q ss_pred cEEEEeCCC--CcEE--EEEeccCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCC
Q 047036 334 GVQQLDIET--GKIV--TEWKFEKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGD 406 (634)
Q Consensus 334 TIrlWDleT--GK~V--~~lkgH~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~ 406 (634)
.+|+|-+.. +++. ..+..|++.-. -++.+|. ...+++ .+|.+.|-|-|+.+||+.++. .+-..|..|.
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFD----Wne~dp-~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFD----WNEVDP-NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccc----cccCCc-ceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 699999863 3321 22333332100 0122332 122333 699999999999999999852 1222344455
Q ss_pred CCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccccc---cCCCCCeEEEEECCCC-CEEEE
Q 047036 407 SPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAF---PGLGSPITHVDVTYDG-KWILG 480 (634)
Q Consensus 407 s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L---~GH~d~ItsVdfSpDG-k~LlS 480 (634)
.. +.-++|..+| .+||.|.||.+|+||++... -.|.+ |.-..|...|++++.- +|+|+
T Consensus 197 KE---------------V~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 197 KE---------------VYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMAT 260 (364)
T ss_pred cc---------------eeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhh
Confidence 44 4567888876 58999999999999987642 22222 2225677888888644 67777
Q ss_pred -EcC-CcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEc-C
Q 047036 481 -TTD-TYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATV-G 557 (634)
Q Consensus 481 -S~D-~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtSt-g 557 (634)
.+| +.|.|.|++. -+..+..+.+|.+.. +.+...|.. ..+|+|+. |
T Consensus 261 f~~dS~~V~iLDiR~---P~tpva~L~~H~a~V------------------NgIaWaPhS----------~~hictaGDD 309 (364)
T KOG0290|consen 261 FAMDSNKVVILDIRV---PCTPVARLRNHQASV------------------NGIAWAPHS----------SSHICTAGDD 309 (364)
T ss_pred hhcCCceEEEEEecC---CCcceehhhcCcccc------------------cceEecCCC----------CceeeecCCc
Confidence 776 5688889884 455566666666522 335555541 24787765 5
Q ss_pred CeEEEEeChhhhc
Q 047036 558 KFSVIWDFQQVKN 570 (634)
Q Consensus 558 ~~viiWdl~~v~~ 570 (634)
--+.|||+.++-+
T Consensus 310 ~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 310 CQALIWDLQQMPR 322 (364)
T ss_pred ceEEEEecccccc
Confidence 5566999998887
No 199
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=110.49 Aligned_cols=188 Identities=10% Similarity=0.023 Sum_probs=127.1
Q ss_pred CCcEEEeeeCCCeEEEecCeeeEEEc-cCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCC
Q 047036 255 GVQSLTLGALDNSFLVSDLGLQVYRN-YNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAP 333 (634)
Q Consensus 255 ~~~~LavG~~D~sfvv~G~~igV~k~-~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~ 333 (634)
.+..++++..+++.+++..+-+..-. ...+ + ...+.. .-.+.++|+.... .++..= +
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~-e----r~~l~~---~~~~g~s~~~~~i--------~~gsv~------~ 155 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSD-E----RCTLYS---SLIIGDSAEELYI--------ASGSVF------G 155 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCC-c----eEEEEe---EEEEeccCcEEEE--------Eecccc------c
Confidence 34688888888999998865554322 1211 1 111111 0233344554332 223221 5
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
.|.+|+..--+.-..+.||.+.+ +. +.++.| |..++|.|+|++||+|++.++....-+.-||+.+
T Consensus 156 ~iivW~~~~dn~p~~l~GHeG~i-F~-i~~s~d--------g~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR----- 220 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPIRLKGHEGSI-FS-IVTSLD--------GRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR----- 220 (967)
T ss_pred cEEEEeccccCCcceecccCCce-EE-EEEccC--------CcEEEEEecCcceeeeecccccccCcccccccce-----
Confidence 79999986222222699999975 24 377777 7899999999999999999875432133345443
Q ss_pred cccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCC-CCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 414 QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLG-SPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~-d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
+..+++.|+ +|+++|.|.+.|+|+.... ....+.+|. .-|+.+++.++--++++ +.|++|++||.
T Consensus 221 ----------vw~~~~~~n-~i~t~gedctcrvW~~~~~--~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 221 ----------VWACCFLPN-RIITVGEDCTCRVWGVNGT--QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ----------eEEEEeccc-eeEEeccceEEEEEecccc--eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 345577777 9999999999999987652 344666765 57999999999999999 99999999996
Q ss_pred c
Q 047036 492 L 492 (634)
Q Consensus 492 ~ 492 (634)
.
T Consensus 288 ~ 288 (967)
T KOG0974|consen 288 N 288 (967)
T ss_pred h
Confidence 5
No 200
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.6e-06 Score=95.44 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=84.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-C--eEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-N--RLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~--tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||+.+|++.+-..++. .+ ...+|+|| |+.|+..+.+ + .|+++|+.++. ++.+..+
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~-~~--~~~~wSPD--------G~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~---- 329 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRS-NN--TEPTWFPD--------SQNLAYTSDQAGRPQVYKVNINGGA--PQRITWE---- 329 (429)
T ss_pred cEEEEEECCCCCEEEccCCCC-Cc--CceEECCC--------CCEEEEEeCCCCCceEEEEECCCCC--eEEeecC----
Confidence 369999999998765544443 22 34599999 5667666654 4 45555665542 2333211
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
.....+.+++|+| +||..+.+ ..|.+||+.+++ . ..|... ....+..|||||++|+. +.++
T Consensus 330 -----------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~ 395 (429)
T PRK03629 330 -----------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLTDT-FLDETPSIAPNGTMVIYSSSQG 395 (429)
T ss_pred -----------CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-e-EEeCCC-CCCCCceECCCCCEEEEEEcCC
Confidence 0112356789999 67766543 358899987753 3 333321 23457889999999998 7665
Q ss_pred c---EEEEEcccccCCCCeeeeecCCC
Q 047036 485 Y---LILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 485 t---IrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
. |.+|++ +|.....+.+|.
T Consensus 396 ~~~~l~~~~~-----~G~~~~~l~~~~ 417 (429)
T PRK03629 396 MGSVLNLVST-----DGRFKARLPATD 417 (429)
T ss_pred CceEEEEEEC-----CCCCeEECccCC
Confidence 4 555564 455544454443
No 201
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=1.5e-07 Score=100.72 Aligned_cols=137 Identities=14% Similarity=0.166 Sum_probs=107.1
Q ss_pred CcEEEEeCCCCcEEEEEeccC---CC----ccee--EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036 333 PGVQQLDIETGKIVTEWKFEK---DG----TDIT--MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV 403 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~---~~----V~I~--vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~ 403 (634)
+-+.+||+++++ +.|.+-. +. |+|+ -..|-|. .+...+|++..=+.||++|+|.++.+|..+.
T Consensus 173 n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 173 NELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEG------SPNYKFATITRYHQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred cceeeeecccce--eeeeccCCCCccccceeeeeeccceecCC------CCCceEEEEecceeEEEecCcccCcceeEec
Confidence 469999999884 4454321 11 1121 1234332 1146899999999999999998877777663
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T 481 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S 481 (634)
| ..++++|++..|+| .|++|-.-|.+..||.++++-....|.|..+.|++|-..|.+++||+ +
T Consensus 245 --------------~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 245 --------------F-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred --------------c-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec
Confidence 1 34568999999999 79999999999999998876455568999999999999999999999 9
Q ss_pred cCCcEEEEEcc
Q 047036 482 TDTYLILICTL 492 (634)
Q Consensus 482 ~D~tIrLWD~~ 492 (634)
.|.||||+|+.
T Consensus 310 LDRyvRIhD~k 320 (412)
T KOG3881|consen 310 LDRYVRIHDIK 320 (412)
T ss_pred cceeEEEeecc
Confidence 99999999986
No 202
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.74 E-value=2.4e-08 Score=114.19 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=108.0
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN 385 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~ 385 (634)
+..-..+++..+..|+.+++| ..+++|..+|+.++....||...+ +-.+++.. +-.+++||.|+
T Consensus 191 naVyca~fDrtg~~Iitgsdd------~lvKiwS~et~~~lAs~rGhs~di--tdlavs~~--------n~~iaaaS~D~ 254 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDD------RLVKIWSMETARCLASCRGHSGDI--TDLAVSSN--------NTMIAAASNDK 254 (1113)
T ss_pred hheeeeeeccccceEeecCcc------ceeeeeeccchhhhccCCCCcccc--chhccchh--------hhhhhhcccCc
Confidence 344455678888899999876 689999999999999999999864 44455544 45899999999
Q ss_pred eEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccc---cc-C
Q 047036 386 RLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTA---FP-G 461 (634)
Q Consensus 386 tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~---L~-G 461 (634)
.|++|-++.+. +|..|.||.+. +++++|+|-. +.|.||++|+||.+- ...++. +. .
T Consensus 255 vIrvWrl~~~~-pvsvLrghtga---------------vtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 255 VIRVWRLPDGA-PVSVLRGHTGA---------------VTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFT 314 (1113)
T ss_pred eEEEEecCCCc-hHHHHhccccc---------------eeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcc
Confidence 99999999754 56778887765 4788888753 889999999999761 001111 11 1
Q ss_pred CCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 462 LGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
-++-+-++-|-..|.-.++ +.|+.-+.|..
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccchh
Confidence 2345566666666666666 66666666643
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=110.28 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=115.1
Q ss_pred EEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCC
Q 047036 292 VRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQ 371 (634)
Q Consensus 292 ~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q 371 (634)
+++..+..+.-..|-|.+-+| ++.++. +-++.-|+.+|++|..+..-.+.+ .|.+-+|-
T Consensus 204 HClk~~~~v~rLeFLPyHfLL---------~~~~~~-----G~L~Y~DVS~GklVa~~~t~~G~~--~vm~qNP~----- 262 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLL---------VAASEA-----GFLKYQDVSTGKLVASIRTGAGRT--DVMKQNPY----- 262 (545)
T ss_pred eehhhcCchhhhcccchhhee---------eecccC-----CceEEEeechhhhhHHHHccCCcc--chhhcCCc-----
Confidence 355544444556677776443 333332 799999999999999998877765 46677775
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036 372 LDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 372 ~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~ 450 (634)
+-.+-+|...|+|-+|-|.++..+|+.| .|.++ ++++|+.++| |+|+.+.|..|++||++
T Consensus 263 ---NaVih~GhsnGtVSlWSP~skePLvKiL-cH~g~---------------V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 263 ---NAVIHLGHSNGTVSLWSPNSKEPLVKIL-CHRGP---------------VSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred ---cceEEEcCCCceEEecCCCCcchHHHHH-hcCCC---------------cceEEECCCCcEEeecccccceeEeeec
Confidence 5688999999999999999877665544 46554 5899999999 89999999999999987
Q ss_pred ccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 451 SMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
+.++..+... .-+...|+||.-|- ||.+.-..|.||-
T Consensus 324 ~~~ql~t~~t--p~~a~~ls~Sqkgl-LA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 324 NFYQLHTYRT--PHPASNLSLSQKGL-LALSYGDHVQIWK 360 (545)
T ss_pred cccccceeec--CCCccccccccccc-eeeecCCeeeeeh
Confidence 7543322222 24678899998774 4447888999994
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.74 E-value=9.8e-08 Score=112.85 Aligned_cols=135 Identities=19% Similarity=0.289 Sum_probs=89.3
Q ss_pred EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036 338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ 417 (634)
Q Consensus 338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~ 417 (634)
|.++ |.+|..+.-|...|. .+ +.++. + +.+++|||+|||||+||.|.-..-..+. .+ .+ .
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~-k~-a~s~~----~---~s~FvsgS~DGtVKvW~~~k~~~~~~s~---rS-~l------t 1093 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVI-KL-AVSSE----H---TSLFVSGSDDGTVKVWNLRKLEGEGGSA---RS-EL------T 1093 (1431)
T ss_pred CCcc-ceEeehhhhcccccc-ce-eecCC----C---CceEEEecCCceEEEeeehhhhcCccee---ee-eE------E
Confidence 8887 999999999999873 55 44443 0 4799999999999999998421000000 00 01 1
Q ss_pred cc-cCcceEEEEECCCC-eEEEEECCCcEEEEeccc--------------------------------------------
Q 047036 418 FS-RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-------------------------------------------- 451 (634)
Q Consensus 418 y~-~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-------------------------------------------- 451 (634)
|. .+..+.++..-+.| ++|+|+.||.|++.++.-
T Consensus 1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence 22 34456666665666 677777777777665532
Q ss_pred ---------cccccc-ccc-CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036 452 ---------MRQAKT-AFP-GLGSPITHVDVTYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 452 ---------~r~akt-~L~-GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
.+.+-+ .++ .| +.|++++++|-|.|++. |..|.+.|||+++
T Consensus 1174 ~iv~~D~r~~~~~w~lk~~~~h-G~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLKNQLRH-GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred ceEEecchhhhhHHhhhcCccc-cceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 110000 011 23 46999999999999999 8999999999986
No 205
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=2.4e-07 Score=102.38 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=38.4
Q ss_pred ceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCC
Q 047036 584 SCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGR 633 (634)
Q Consensus 584 ~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~ 633 (634)
.-|||+|.+|...|+ ++||.||.+ ..||||+|+||.+++.++.
T Consensus 579 ~~~~Yri~r~~~~v~-----adnf~fg~d--s~Viv~l~dDv~~v~~~s~ 621 (644)
T KOG2395|consen 579 KHYSYRIRRYLALVV-----ADNFEFGED--SIVIVALPDDVFKVSVRSL 621 (644)
T ss_pred Ccchhhhhhhcccee-----EeeEEecCC--ceEEEecccchhhhccccc
Confidence 468999999999988 899999964 7999999999999999753
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.72 E-value=1.9e-07 Score=97.05 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=126.0
Q ss_pred EEecCeeeEEEccCCc--eecceeEEEecCCCCCcccccCcceeeEEe-CCcceEEecCCCCCCCCCCcEEEEeCCCCcE
Q 047036 269 LVSDLGLQVYRNYNRG--IHNKGVSVRFDGGSSKIGSNSTPKKALLMR-GETNMMLMSPLKDGKPQAPGVQQLDIETGKI 345 (634)
Q Consensus 269 vv~G~~igV~k~~~~g--l~~~~~~~~~~~~~~~~g~~fsP~~~mL~~-~D~~mllsss~d~~~~~~~TIrlWDleTGK~ 345 (634)
...|+-+++|+...+. ++-. ..+..+ +++....|-...-.+ -|-++|.+++-| .|+-+||+++|..
T Consensus 117 ATs~D~LRlWri~~ee~~~~~~---~~L~~~--kns~~~aPlTSFDWne~dp~~igtSSiD------TTCTiWdie~~~~ 185 (364)
T KOG0290|consen 117 ATSSDFLRLWRIGDEESRVELQ---SVLNNN--KNSEFCAPLTSFDWNEVDPNLIGTSSID------TTCTIWDIETGVS 185 (364)
T ss_pred hcccCeEEEEeccCcCCceehh---hhhccC--cccccCCcccccccccCCcceeEeeccc------CeEEEEEEeeccc
Confidence 3457888999975422 2111 112222 234444455444333 567788888886 7999999999844
Q ss_pred ---EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCc
Q 047036 346 ---VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGT 422 (634)
Q Consensus 346 ---V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~ 422 (634)
-..|-.|...|. -++|...+ -+.+||.+.||+||++|+|.... .++..- ++ ....
T Consensus 186 ~~vkTQLIAHDKEV~--DIaf~~~s-------~~~FASvgaDGSvRmFDLR~leH--STIIYE-~p----------~~~~ 243 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVY--DIAFLKGS-------RDVFASVGADGSVRMFDLRSLEH--STIIYE-DP----------SPST 243 (364)
T ss_pred cceeeEEEecCccee--EEEeccCc-------cceEEEecCCCcEEEEEeccccc--ceEEec-CC----------CCCC
Confidence 556999999873 44888642 36899999999999999997532 111100 00 1123
Q ss_pred ceEEEEECCCC--eEEE-EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCE-EEE-EcCCcEEEEEcc
Q 047036 423 NFQCFASTGDG--SIVV-GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-ILG-TTDTYLILICTL 492 (634)
Q Consensus 423 ~fssva~s~dG--~IAS-GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~D~tIrLWD~~ 492 (634)
++.-++.++.. ++|+ +-....|-+-|++..-.+...|.+|+.+|++|++.|-.+- |++ +.|..+.|||+.
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 34444555433 6666 4455688899976543466789999999999999997765 555 678999999975
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2e-06 Score=94.41 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=83.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCe--EEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNR--LCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~t--IklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||+.+|+.. .+..+...+ ...+|+|| |..| ++.+.++. |++||+.++. ++.|..+..
T Consensus 226 ~~i~~~dl~~g~~~-~l~~~~g~~--~~~~~SPD--------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~-- 290 (435)
T PRK05137 226 PRVYLLDLETGQRE-LVGNFPGMT--FAPRFSPD--------GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPA-- 290 (435)
T ss_pred CEEEEEECCCCcEE-EeecCCCcc--cCcEECCC--------CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCC--
Confidence 68999999998763 444444433 23489999 4444 56666655 8888988754 244432211
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcC-
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTD- 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D- 483 (634)
...+.+++||| +||..|. +| .|.+||+.++. . +.+..+...+....|||||++|+. +.+
T Consensus 291 -------------~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 291 -------------IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRISFGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred -------------ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence 12345789999 6877764 33 68888877642 3 334334556778899999999987 443
Q ss_pred --CcEEEEEc
Q 047036 484 --TYLILICT 491 (634)
Q Consensus 484 --~tIrLWD~ 491 (634)
..|.+||+
T Consensus 356 ~~~~i~~~d~ 365 (435)
T PRK05137 356 GQFSIGVMKP 365 (435)
T ss_pred CceEEEEEEC
Confidence 35777774
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=2.2e-06 Score=94.17 Aligned_cols=130 Identities=16% Similarity=0.071 Sum_probs=81.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCC--eEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDN--RLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~--tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||+.+|+... +..+...+ ...+|+|| |+.| ++.+.++ .|++||+.++. ++.+..|..
T Consensus 228 ~~l~~~dl~~g~~~~-l~~~~g~~--~~~~~SpD--------G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~-- 292 (433)
T PRK04922 228 SAIYVQDLATGQREL-VASFRGIN--GAPSFSPD--------GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFG-- 292 (433)
T ss_pred cEEEEEECCCCCEEE-eccCCCCc--cCceECCC--------CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCC--
Confidence 579999999987643 22222211 23489999 4444 5656555 59999998754 234432211
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEEC-CCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
.....+++|+| +|+.+|. +|. |.++|+.+++ . ..+..++....+++|||||++|+. +.++
T Consensus 293 -------------~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~ 357 (433)
T PRK04922 293 -------------IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-A-ERLTFQGNYNARASVSPDGKKIAMVHGSG 357 (433)
T ss_pred -------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCC-e-EEeecCCCCccCEEECCCCCEEEEEECCC
Confidence 12345789999 6877764 455 6666765542 2 223334455668999999999987 4432
Q ss_pred ---cEEEEEcc
Q 047036 485 ---YLILICTL 492 (634)
Q Consensus 485 ---tIrLWD~~ 492 (634)
.|.+||+.
T Consensus 358 ~~~~I~v~d~~ 368 (433)
T PRK04922 358 GQYRIAVMDLS 368 (433)
T ss_pred CceeEEEEECC
Confidence 58899964
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.69 E-value=1.8e-06 Score=90.77 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=147.3
Q ss_pred CcEEEeee-CCCe-EEE-ecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcce-EEecCCCCCCCC
Q 047036 256 VQSLTLGA-LDNS-FLV-SDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNM-MLMSPLKDGKPQ 331 (634)
Q Consensus 256 ~~~LavG~-~D~s-fvv-~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~m-llsss~d~~~~~ 331 (634)
.+.|.|.+ -|-| |.+ .....++|...+=+. .....+.. .| +. .-.||+.- |+ .|.++....+.-
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke---~~~r~~~~----~G--~~-~veMLfR~--N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKE---SASRQFID----GG--FK-IVEMLFRS--NYLALVGGGSRPKYP 73 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhh---hhhhcccc----Cc--hh-hhhHhhhh--ceEEEecCCCCCCCC
Confidence 45777888 4665 444 346777788655210 01111111 22 22 22456643 33 334444322333
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
-+.|.+||=...++|.++..... |..+.+.++ .|+. --.++|++|..-..-+.+..+.--..|
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~---I~~V~l~r~----------riVv-vl~~~I~VytF~~n~k~l~~~et~~NP--- 136 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSE---IKAVKLRRD----------RIVV-VLENKIYVYTFPDNPKLLHVIETRSNP--- 136 (346)
T ss_pred CceEEEEecccCcEEEEEEeccc---eeeEEEcCC----------eEEE-EecCeEEEEEcCCChhheeeeecccCC---
Confidence 45799999888999999988764 345577775 3444 357899999875321112222100111
Q ss_pred cccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEecccccc-ccccccCCCCCeEEEEECCCCCEEEE-EcCCc-E
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKTSMRQ-AKTAFPGLGSPITHVDVTYDGKWILG-TTDTY-L 486 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~t~r~-akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t-I 486 (634)
.-..+++.+.+- .||- |-.-|.|+|=|+...+. +-..+++|...|.+|+++-+|..||+ |..+| |
T Consensus 137 ----------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 137 ----------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI 206 (346)
T ss_pred ----------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence 113444444343 4554 56779999999865321 23568899999999999999999999 88777 8
Q ss_pred EEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEE-cCCeEEEEeC
Q 047036 487 ILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDF 565 (634)
Q Consensus 487 rLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl 565 (634)
||||+. +|..+..|..-.. +++. ..++|+|+ ..+|++| .-+++-|+.+
T Consensus 207 RIFdt~----~g~~l~E~RRG~d--------------~A~i--y~iaFSp~-----------~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 207 RIFDTE----DGTLLQELRRGVD--------------RADI--YCIAFSPN-----------SSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEcC----CCcEeeeeecCCc--------------hheE--EEEEeCCC-----------ccEEEEEcCCCeEEEEEe
Confidence 999986 7888877764332 1111 35777777 2566664 5577889999
Q ss_pred hh
Q 047036 566 QQ 567 (634)
Q Consensus 566 ~~ 567 (634)
+.
T Consensus 256 ~~ 257 (346)
T KOG2111|consen 256 RD 257 (346)
T ss_pred ec
Confidence 75
No 210
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=3.4e-07 Score=101.88 Aligned_cols=148 Identities=14% Similarity=0.205 Sum_probs=114.8
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEe--ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWK--FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL 387 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lk--gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI 387 (634)
+-.+..|..||+.|-.. +.|-++++..|++-.++. .|.+.|+ ++ ..+.+ -..|.|++.|+.+
T Consensus 63 ~~~~s~~t~~lvlgt~~------g~v~~ys~~~g~it~~~st~~h~~~v~-~~-~~~~~--------~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 63 AKKASLDTSMLVLGTPQ------GSVLLYSVAGGEITAKLSTDKHYGNVN-EI-LDAQR--------LGCIYSVGADLKV 126 (541)
T ss_pred HhhccCCceEEEeecCC------ccEEEEEecCCeEEEEEecCCCCCcce-ee-ecccc--------cCceEecCCceeE
Confidence 44567788888888664 689999999999999997 5777663 22 22322 3589999999999
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
..|++.... ++.... .....++++|.+||| .+++|| ++|++||..+. ....+|+||+.||
T Consensus 127 ~~~~~~~~~-~~~~~~---------------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k-evv~~ftgh~s~v 187 (541)
T KOG4547|consen 127 VYILEKEKV-IIRIWK---------------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK-EVVITFTGHGSPV 187 (541)
T ss_pred EEEecccce-eeeeec---------------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc-eEEEEecCCCcce
Confidence 999998753 222221 123346788999998 678886 68999999996 4788999999999
Q ss_pred EEEEECCC-----CCEEEE--EcCCcEEEEEcc
Q 047036 467 THVDVTYD-----GKWILG--TTDTYLILICTL 492 (634)
Q Consensus 467 tsVdfSpD-----Gk~LlS--S~D~tIrLWD~~ 492 (634)
+++.|..+ |.++++ ..+..|.+|-+.
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999999 999998 457888888765
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=6.7e-06 Score=90.40 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=78.3
Q ss_pred CcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||+.+|+..+- +.++. ...+|+|| |..| ++.+.++...+|.+......++.+..|..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~-----~~~~~SPD--------G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-- 284 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSN-----SAPAWSPD--------GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG-- 284 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCc-----cceEECCC--------CCEEEEEEccCCCceEEEEECCCCCcEECCCCCC--
Confidence 4699999999976432 33332 23589999 4555 46777877666654322222344432211
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEEC-CCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
...+.+++||| +|+..|. +|...||.. .+++ . ..+..++......+|||||++|+. +.++
T Consensus 285 -------------~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 285 -------------IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-A-QRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred -------------CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-e-EEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 11345689999 6776654 567777764 3332 2 222223344567899999999997 5443
Q ss_pred ---cEEEEEcc
Q 047036 485 ---YLILICTL 492 (634)
Q Consensus 485 ---tIrLWD~~ 492 (634)
.|.+||+.
T Consensus 350 g~~~I~v~d~~ 360 (427)
T PRK02889 350 GAFKLYVQDLA 360 (427)
T ss_pred CcEEEEEEECC
Confidence 69999964
No 212
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=3.4e-07 Score=107.01 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=115.3
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCccee--EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDIT--MRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~--vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
-.+.+..+.++. +.+-+||..-+.++.+........-++ +.-++++ .=.+++|+.-+-|.+|+
T Consensus 97 ~e~k~i~l~~~~-------ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--------~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 97 EENKKIALVTSR-------NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--------ELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhcceEEEEEcC-------ceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--------EEEEEeccccccEEEEe
Confidence 344455556655 369999999888888776544321111 1123333 23799999999999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEE
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVD 470 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVd 470 (634)
+..-+..+ .+.||... +.++.++.+| +||+.|.|.+||||++.+.+....+.=||+..|+.++
T Consensus 162 ~~~dn~p~-~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 162 PHEDNKPI-RLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred ccccCCcc-eecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 98433333 35555443 2356677777 8999999999999999886544335558999999999
Q ss_pred ECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCC
Q 047036 471 VTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGN 510 (634)
Q Consensus 471 fSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~ 510 (634)
|.|+ .|++ +.|.|.++|+. .|+.+..|.+|.+.
T Consensus 226 ~~~n--~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~ 259 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGK 259 (967)
T ss_pred eccc--eeEEeccceEEEEEec-----ccceehhhhhhhhc
Confidence 9999 7777 99999999974 58888899999873
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=2.3e-06 Score=94.04 Aligned_cols=129 Identities=16% Similarity=-0.002 Sum_probs=86.2
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCC
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSP 408 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~ 408 (634)
..+|++||.. |...+.+..|...+ ...+|+|| |+.|+..+.. ..|++||+.++.. +.+..+.
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v--~~p~wSpD--------g~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~-- 247 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPI--LSPAWSPD--------GKKLAYVSFERGRSAIYVQDLATGQR--ELVASFR-- 247 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCcc--ccccCCCC--------CCEEEEEecCCCCcEEEEEECCCCCE--EEeccCC--
Confidence 3579999986 66666777776654 34489999 5677777643 4799999987543 2232111
Q ss_pred ccccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEc--
Q 047036 409 VLHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTT-- 482 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~-- 482 (634)
+ ...+.+++|+| +|| +.+.+| .|.+||+.+++ ...+..|.....+++|||||++|+.+.
T Consensus 248 ------g-------~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 248 ------G-------INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred ------C-------CccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECC
Confidence 1 12356789999 565 556666 59999988753 345666666667899999999999733
Q ss_pred CCcEEEEE
Q 047036 483 DTYLILIC 490 (634)
Q Consensus 483 D~tIrLWD 490 (634)
++...||.
T Consensus 313 ~g~~~iy~ 320 (433)
T PRK04922 313 GGRPQIYR 320 (433)
T ss_pred CCCceEEE
Confidence 34444443
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.64 E-value=8.3e-07 Score=87.93 Aligned_cols=133 Identities=13% Similarity=0.214 Sum_probs=84.3
Q ss_pred eeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC
Q 047036 274 GLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK 353 (634)
Q Consensus 274 ~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~ 353 (634)
...+|.....+... ..+.+....++...+|+|++..++ ++.+..+ .+|.+||++ ++.+.++..+.
T Consensus 38 ~~~l~~~~~~~~~~--~~i~l~~~~~I~~~~WsP~g~~fa------vi~g~~~------~~v~lyd~~-~~~i~~~~~~~ 102 (194)
T PF08662_consen 38 EFELFYLNEKNIPV--ESIELKKEGPIHDVAWSPNGNEFA------VIYGSMP------AKVTLYDVK-GKKIFSFGTQP 102 (194)
T ss_pred eEEEEEEecCCCcc--ceeeccCCCceEEEEECcCCCEEE------EEEccCC------cccEEEcCc-ccEeEeecCCC
Confidence 45566654433221 222332222345666777653321 3333222 589999997 88888886432
Q ss_pred CCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEEC
Q 047036 354 DGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAST 430 (634)
Q Consensus 354 ~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s 430 (634)
+ ..+.|+|+ |+.+++|+.+ +.|.+||++... .+.+.. ....+.++++
T Consensus 103 --~--n~i~wsP~--------G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~-----------------~~~~t~~~Ws 152 (194)
T PF08662_consen 103 --R--NTISWSPD--------GRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE-----------------HSDATDVEWS 152 (194)
T ss_pred --c--eEEEECCC--------CCEEEEEEccCCCcEEEEEECCCCE-Eeeccc-----------------cCcEEEEEEc
Confidence 2 34599999 6788888755 459999999643 333331 1135788999
Q ss_pred CCC-eEEEEE------CCCcEEEEeccc
Q 047036 431 GDG-SIVVGS------LDGKIRLYSKTS 451 (634)
Q Consensus 431 ~dG-~IASGS------~DGtIRLWD~~t 451 (634)
|+| +||+++ .|+.++||+..+
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecC
Confidence 999 777765 489999999875
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=2e-06 Score=92.27 Aligned_cols=200 Identities=16% Similarity=0.090 Sum_probs=124.6
Q ss_pred cEEEeee-CCCeEEEec---CeeeEEEccCCceecce-eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCC
Q 047036 257 QSLTLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKG-VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQ 331 (634)
Q Consensus 257 ~~LavG~-~D~sfvv~G---~~igV~k~~~~gl~~~~-~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~ 331 (634)
.+-|+-| +.+.|++.| ....||....- +.-++ .-+.+.+|.. .+..| .+.++-....|++++.+
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~-~~~k~~KPI~~~~~~H-~SNIF----~L~F~~~N~~~~SG~~~----- 126 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDEL-MVRKTPKPIGVMEHPH-RSNIF----SLEFDLENRFLYSGERW----- 126 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHH-HhhcCCCCceeccCcc-ccceE----EEEEccCCeeEecCCCc-----
Confidence 3455666 567888876 46677765221 11111 0111222210 12222 24455555566677665
Q ss_pred CCcEEEEeCCCCcEEEEEeccC--CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 332 APGVQQLDIETGKIVTEWKFEK--DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~--~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
++|.+-|++|-+.|..+.-.. +.| .-++.+|. .+.+++.+.++.|-+||.|.+...+ +++
T Consensus 127 -~~VI~HDiEt~qsi~V~~~~~~~~~V--Y~m~~~P~--------DN~~~~~t~~~~V~~~D~Rd~~~~~-------~~~ 188 (609)
T KOG4227|consen 127 -GTVIKHDIETKQSIYVANENNNRGDV--YHMDQHPT--------DNTLIVVTRAKLVSFIDNRDRQNPI-------SLV 188 (609)
T ss_pred -ceeEeeecccceeeeeecccCcccce--eecccCCC--------CceEEEEecCceEEEEeccCCCCCC-------cee
Confidence 799999999999888775333 244 44577776 5799999999999999999765322 222
Q ss_pred cccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccccc---cccCCCC---CeEEEEECCCCCEEEE-
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKT---AFPGLGS---PITHVDVTYDGKWILG- 480 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt---~L~GH~d---~ItsVdfSpDGk~LlS- 480 (634)
+.-+ ....|.++.|.|-. .|++++..+-+-|||++....... -+.|+.. .-.++-|+|+|..+++
T Consensus 189 ~~AN------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 189 LPAN------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred eecC------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 1111 23457888898865 799999999999999764211111 1223333 2368999999999999
Q ss_pred EcCCcEEEEEc
Q 047036 481 TTDTYLILICT 491 (634)
Q Consensus 481 S~D~tIrLWD~ 491 (634)
-.-..-.++|+
T Consensus 263 RR~~~P~~~D~ 273 (609)
T KOG4227|consen 263 RRGKCPLYFDF 273 (609)
T ss_pred hccCCCEEeee
Confidence 66666667775
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=2.1e-06 Score=94.30 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=88.1
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|.+||. .|+..+.+..|...+ ...+|+|| |+.|+..+.+ ..|.+||++++.. ..+...
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v--~~p~wSPD--------G~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~---- 238 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPI--ISPAWSPD--------GTKLAYVSFESKKPVVYVHDLATGRR--RVVANF---- 238 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCc--ccceEcCC--------CCEEEEEEccCCCcEEEEEECCCCCE--EEeecC----
Confidence 57999998 477777777777765 34599999 5677776643 4599999987643 222110
Q ss_pred cccccccccccCcceEEEEECCCC-eEE-EEECCCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
.....+.+++||| .|| +.+.+|..+||.. .++ ....|..|...+++.+|||||++|+. +. +
T Consensus 239 -----------~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 239 -----------KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred -----------CCCccceEECCCCCEEEEEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCC
Confidence 0112467889999 676 5688888777764 332 23456556666788999999999987 43 4
Q ss_pred CcEEEEEcc
Q 047036 484 TYLILICTL 492 (634)
Q Consensus 484 ~tIrLWD~~ 492 (634)
+...||.+.
T Consensus 306 g~~~Iy~~~ 314 (427)
T PRK02889 306 GAPQIYRMP 314 (427)
T ss_pred CCcEEEEEE
Confidence 667777643
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=4.7e-06 Score=91.54 Aligned_cols=129 Identities=14% Similarity=0.016 Sum_probs=88.9
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC---CCeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD---DNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~---D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||.. |...+.+..|...| ...+|+|| |+.|+..+. +..|++||++++.. +.+..+..
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v--~~p~wSpD--------G~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g-- 246 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLV--LTPRFSPN--------RQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPG-- 246 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCe--EeeEECCC--------CCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCC--
Confidence 589999985 66677788887765 34599999 566776653 47899999987643 23321111
Q ss_pred cccccccccccCcceEEEEECCCC-eEE-EEECCCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
...+.+++||| +|| +.+.+|. |.+||+.++. ...|..+...+++.+|||||++|+. +. +
T Consensus 247 -------------~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 247 -------------MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred -------------cccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCC
Confidence 12456789999 565 5666665 7777887752 3456666667788999999999987 42 2
Q ss_pred C--cEEEEEc
Q 047036 484 T--YLILICT 491 (634)
Q Consensus 484 ~--tIrLWD~ 491 (634)
+ .|.+||+
T Consensus 312 g~~~Iy~~d~ 321 (435)
T PRK05137 312 GSPQLYVMNA 321 (435)
T ss_pred CCCeEEEEEC
Confidence 2 4666664
No 218
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=1.6e-07 Score=110.57 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=115.8
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC---eEEEEEcCC
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN---RLCQWDMRD 394 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~---tIklWD~R~ 394 (634)
..||+++... +++-+||+..-+.|-.+.-|......+++.|+|+. ..+|++++.|. .|.+||+|-
T Consensus 174 qhILAS~s~s-----g~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~-------aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 174 SHILASGSPS-----GRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDH-------ATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred hHHhhccCCC-----CCceeccccCCCcccccccCCCccceeeeeeCCCC-------ceeeeeecCCCCCceeEeecccc
Confidence 3466665543 68999999988888888888775555788999983 35788887764 699999997
Q ss_pred CCceEEecccCCCCccccccccccccCcceEEEEECC-C-CeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D-GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT 472 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d-G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS 472 (634)
....++++.+|...| .++...+ | .+|+|++.|+.|-+|+..++. ....|+.-++++..|.|+
T Consensus 242 assP~k~~~~H~~Gi---------------lslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 242 ASSPLKILEGHQRGI---------------LSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred cCCchhhhcccccce---------------eeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeec
Confidence 666778888777654 3344443 3 379999999999999999874 778899999999999999
Q ss_pred CCCC-EEEE-EcCCcEEEEEccc
Q 047036 473 YDGK-WILG-TTDTYLILICTLF 493 (634)
Q Consensus 473 pDGk-~LlS-S~D~tIrLWD~~~ 493 (634)
|--- .+++ +.|+.|-|+.+.-
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CCCcchhhhheeccceeeeeeec
Confidence 9876 4444 9999999998763
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.9e-06 Score=92.34 Aligned_cols=197 Identities=17% Similarity=0.187 Sum_probs=130.0
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCc----EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--CeE
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGK----IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--NRL 387 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK----~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--~tI 387 (634)
..++.+|+.-++ +.|.+|-++.|- .+..|..|.. ++.+.-+|.. ...+++|+-. +-+
T Consensus 113 ~~dg~Litc~~s-------G~l~~~~~k~~d~hss~l~~la~g~g---~~~~r~~~~~-------p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 113 LADGTLITCVSS-------GNLQVRHDKSGDLHSSKLIKLATGPG---LYDVRQTDTD-------PYIVATGGKENINEL 175 (412)
T ss_pred hcCCEEEEEecC-------CcEEEEeccCCccccccceeeecCCc---eeeeccCCCC-------CceEecCchhcccce
Confidence 445555555443 569999988543 5566776654 2344445442 2578889999 999
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--C-eEEEEECCCcEEEEeccccccccccccCCCC
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--G-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS 464 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d 464 (634)
++||+... .|.+.+.+-+ .+|.+ ...-+-++.+.|.++ . .||+++.-+.+||||.+.+|+....|+-...
T Consensus 176 kiwdle~~---~qiw~aKNvp-nD~L~---LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 176 KIWDLEQS---KQIWSAKNVP-NDRLG---LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred eeeecccc---eeeeeccCCC-Ccccc---ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 99999864 3444322211 11111 112223466677665 4 7999999999999999988878888888889
Q ss_pred CeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee-eecCCCCCCCCCceeEeecCCCccccCCCccccccccccc
Q 047036 465 PITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT-GFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV 542 (634)
Q Consensus 465 ~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~-gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~ 542 (634)
+|+++...|+|+.|.+ ..-+.|-.+|++ .|+.+. +|.|-.| .+|-+...|.|
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tG----sirsih~hp~~------------------ 302 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITG----SIRSIHCHPTH------------------ 302 (412)
T ss_pred cceeeeecCCCcEEEEecccchhheeccc----CceeeccccCCccC----CcceEEEcCCC------------------
Confidence 9999999999999998 778999999987 333322 2333333 12333322221
Q ss_pred ccCCCCceEEEE-EcCCeEEEEeChh
Q 047036 543 TENGKQERHLVA-TVGKFSVIWDFQQ 567 (634)
Q Consensus 543 t~~g~~E~~Ivt-Stg~~viiWdl~~ 567 (634)
++|++ +-|+||.|.|++.
T Consensus 303 -------~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 303 -------PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred -------ceEEeeccceeEEEeeccc
Confidence 34444 6699999999985
No 220
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=3.4e-07 Score=97.99 Aligned_cols=182 Identities=12% Similarity=0.059 Sum_probs=122.8
Q ss_pred EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC----C-ceEEecccCCCCccccccccccccC
Q 047036 347 TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR----S-GIVQNMVKGDSPVLHWTQGHQFSRG 421 (634)
Q Consensus 347 ~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~----~-~~Vq~l~gh~s~V~~~~~g~~y~~~ 421 (634)
+.+.+|.+-|+ .+.|+.+ ++.|++|++|..+++|.+... . ++|+.. +| .+.
T Consensus 50 KD~~~H~GCiN--AlqFS~N--------~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~-------------~H~ 105 (609)
T KOG4227|consen 50 KDVREHTGCIN--ALQFSHN--------DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EH-------------PHR 105 (609)
T ss_pred hhhhhhccccc--eeeeccC--------CeEEeecCCcceeeeechHHHHhhcCCCCceec-cC-------------ccc
Confidence 34668998764 5589887 689999999999999998631 1 223322 11 133
Q ss_pred cceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCC---CeEEEEECCCCCEEEE-EcCCcEEEEEcccccC
Q 047036 422 TNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS---PITHVDVTYDGKWILG-TTDTYLILICTLFSDK 496 (634)
Q Consensus 422 ~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d---~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~ 496 (634)
.++.|++|.-.. .|.+|..+++|-+-|+.+. +.+..+ .|.+ .|++++.+|--..+++ |.++.|.+||.+-.
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~-qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~-- 181 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETK-QSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR-- 181 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccc-eeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCC--
Confidence 467899997665 7999999999999998874 333333 3555 8999999999888888 89999999997621
Q ss_pred CCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhcccccc
Q 047036 497 DGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHEC 575 (634)
Q Consensus 497 ~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~~ 575 (634)
|.|..+-+ .+..+.+|..+-|++.+ ..+|++ +.-+.+-+||..+-. ..+..
T Consensus 182 ----------------~~~~~~~~------~AN~~~~F~t~~F~P~~-----P~Li~~~~~~~G~~~~D~R~~~-~~~~~ 233 (609)
T KOG4227|consen 182 ----------------QNPISLVL------PANSGKNFYTAEFHPET-----PALILVNSETGGPNVFDRRMQA-RPVYQ 233 (609)
T ss_pred ----------------CCCCceee------ecCCCccceeeeecCCC-----ceeEEeccccCCCCceeecccc-chHHh
Confidence 11111111 11235688888898754 255554 555667899986433 22334
Q ss_pred cccccCCcc
Q 047036 576 YRNQQGLKS 584 (634)
Q Consensus 576 y~~~~~~~~ 584 (634)
|.+-.||.+
T Consensus 234 ~~~~~~L~~ 242 (609)
T KOG4227|consen 234 RSMFKGLPQ 242 (609)
T ss_pred hhccccCcc
Confidence 445555554
No 221
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=9.2e-08 Score=106.49 Aligned_cols=146 Identities=13% Similarity=0.208 Sum_probs=113.5
Q ss_pred EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
++.+-...++.+.. +.||++|+..+.+|.++......| +..+++|. |..|+.|+.|+.++.+|
T Consensus 573 ~FHPs~p~lfVaTq-------~~vRiYdL~kqelvKkL~tg~kwi--S~msihp~--------GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQ-------RSVRIYDLSKQELVKKLLTGSKWI--SSMSIHPN--------GDNLILGSYDKKMCWFD 635 (733)
T ss_pred EecCCCceEEEEec-------cceEEEehhHHHHHHHHhcCCeee--eeeeecCC--------CCeEEEecCCCeeEEEE
Confidence 34444445555544 469999999999999988777765 56699997 78999999999999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc----ccc----ccccccCC
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS----MRQ----AKTAFPGL 462 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t----~r~----akt~L~GH 462 (634)
+....++.++|.-|... +++|++.+.- .+||||.||++.+|-..- +++ ....|+||
T Consensus 636 ldlsskPyk~lr~H~~a---------------vr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKA---------------VRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred cccCcchhHHhhhhhhh---------------hhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 98877777887655443 4667777765 799999999999886321 011 23467899
Q ss_pred CCC----eEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 463 GSP----ITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 463 ~d~----ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
.-. |..+.|+|---||.| +.|++||||
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 877 999999999999999 999999998
No 222
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.58 E-value=3.1e-06 Score=96.27 Aligned_cols=167 Identities=15% Similarity=0.100 Sum_probs=106.4
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcE--EEEE----eccCCCcceeEEEEecCCCCCCCCC
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI--VTEW----KFEKDGTDITMRDITNDTKSSQLDP 374 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~--V~~l----kgH~~~V~I~vvsfsPd~K~~q~~~ 374 (634)
....|+|... ++|+.|..+ |+|-+||+..+.. ...+ -.|...| ..+.+..+. .
T Consensus 246 ~~~~f~p~~p-------~ll~gG~y~------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v--~~vvW~~~~-----~- 304 (555)
T KOG1587|consen 246 TCLKFCPFDP-------NLLAGGCYN------GQVVLWDLRKGSDTPPSGLSALEVSHSEPV--TAVVWLQNE-----H- 304 (555)
T ss_pred eEEEeccCCc-------ceEEeeccC------ceEEEEEccCCCCCCCcccccccccCCcCe--EEEEEeccC-----C-
Confidence 4555665543 344555443 7999999998776 3222 3466654 344555531 1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM 452 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~ 452 (634)
+.-++|+|.||.|+.|+++.-..++..+.. .... ..+.+.......+++.|.+.- .+++|+..|.|.-=++.+.
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~--~~~~--~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLL--ESKK--HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhccc--cccc--ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 245999999999999999864433222210 0000 001122334566888887654 7999999999987555544
Q ss_pred cccc-------ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 453 RQAK-------TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 453 r~ak-------t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+.+. ..+..|.++|++|.++|=+.-+.. ++|-+++||...
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 3222 244568899999999999977665 889999999853
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.48 E-value=2e-06 Score=90.44 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=122.1
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD 383 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~ 383 (634)
..|...+..+.|+.+|..++.+ |+=.||-|+-.+ -+..++|+-|...| +.++++|. .+.|++|+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~----~evhiy~~~~~~~w~~~htls~Hd~~v--tgvdWap~--------snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNN----HEVHIYSMLGADLWEPAHTLSEHDKIV--TGVDWAPK--------SNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCCceEEeccCC----ceEEEEEecCCCCceeceehhhhCcce--eEEeecCC--------CCceeEccC
Confidence 3577778888999999999875 233344444444 46889999999987 45799997 578999999
Q ss_pred CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc---ccccc
Q 047036 384 DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ---AKTAF 459 (634)
Q Consensus 384 D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~---akt~L 459 (634)
|+..++|-.+.++.-..+|. + ...+-..+||-.+|.+ .+|+||.-..|-+|-...-+. .|..-
T Consensus 76 drnayVw~~~~~~~Wkptlv------L-------lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLV------L-------LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred CCCccccccCCCCeecccee------E-------EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence 99999999976653222221 0 0122235788889988 799999999999998765211 22233
Q ss_pred cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccccc
Q 047036 460 PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSD 495 (634)
Q Consensus 460 ~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~ 495 (634)
..+...|++|++.|++-.|++ |||...|++.+.+++
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence 357889999999999999999 999999999987654
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.46 E-value=1.1e-05 Score=87.65 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=89.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
++|.+.|.+|.+++.++.++.. +. ..+.|+|| |+++++++.|+.|.+||+.+.+ ++.++.
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~-~h-~~~~~s~D--------gr~~yv~~rdg~vsviD~~~~~-~v~~i~--------- 75 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGA-PH-AGLKFSPD--------GRYLYVANRDGTVSVIDLATGK-VVATIK--------- 75 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STT-EE-EEEE-TT---------SSEEEEEETTSEEEEEETTSSS-EEEEEE---------
T ss_pred CEEEEEECCCCeEEEEEcCCCC-ce-eEEEecCC--------CCEEEEEcCCCeEEEEECCccc-EEEEEe---------
Confidence 6899999999999999987654 22 33589999 6789999999999999999865 566653
Q ss_pred ccccccccCcceEEEEECCCC-eEEEE-ECCCcEEEEeccccccccccccC-------CCCCeEEEEECCCCC-EEEEEc
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVG-SLDGKIRLYSKTSMRQAKTAFPG-------LGSPITHVDVTYDGK-WILGTT 482 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASG-S~DGtIRLWD~~t~r~akt~L~G-------H~d~ItsVdfSpDGk-~LlSS~ 482 (634)
.+..-.++++|+|| +|+++ -..+++.++|..+++ ....++. -...+.+|-.+|.+. ||++-.
T Consensus 76 -------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 76 -------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp --------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred -------cCCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 12234678999999 66665 479999999998874 5555543 234678999999999 566656
Q ss_pred C-CcEEEEEcc
Q 047036 483 D-TYLILICTL 492 (634)
Q Consensus 483 D-~tIrLWD~~ 492 (634)
| +.|.+.|..
T Consensus 148 d~~~I~vVdy~ 158 (369)
T PF02239_consen 148 DTGEIWVVDYS 158 (369)
T ss_dssp TTTEEEEEETT
T ss_pred cCCeEEEEEec
Confidence 5 556666743
No 225
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=2.9e-06 Score=98.06 Aligned_cols=130 Identities=21% Similarity=0.299 Sum_probs=100.4
Q ss_pred CcEEEEeCCCCcEEEEEe------ccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC-CC-c-eEEecc
Q 047036 333 PGVQQLDIETGKIVTEWK------FEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD-RS-G-IVQNMV 403 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lk------gH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~-~~-~-~Vq~l~ 403 (634)
..+++|+++++. +... -|.-. +.+++++|. ++.+|+|-.||.|.+|---. .. . -.+.
T Consensus 181 ~~~~~~~v~~~~--~~~~~~~~~~~Htf~--~t~~~~spn--------~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~-- 246 (792)
T KOG1963|consen 181 CKIHIYFVPKHT--KHTSSRDITVHHTFN--ITCVALSPN--------ERYLAAGDSDGRILVWRDFGSSDDSETCTL-- 246 (792)
T ss_pred eeEEEEEecccc--eeeccchhhhhhccc--ceeEEeccc--------cceEEEeccCCcEEEEeccccccccccceE--
Confidence 469999998865 2222 24332 467899998 68999999999999995322 11 1 0122
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-E
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-T 481 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S 481 (634)
++| +...+.+++|+.+| +|.||+..|.+-+|-+.+++ ++-||-++.||.++.+||||.+.+. .
T Consensus 247 ------lHW-------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~ 311 (792)
T KOG1963|consen 247 ------LHW-------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVL 311 (792)
T ss_pred ------EEe-------cccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEe
Confidence 223 23457889999998 99999999999999998863 7889999999999999999998877 8
Q ss_pred cCCcEEEEEc
Q 047036 482 TDTYLILICT 491 (634)
Q Consensus 482 ~D~tIrLWD~ 491 (634)
.|+.|.|...
T Consensus 312 ~DNqI~li~~ 321 (792)
T KOG1963|consen 312 EDNQIHLIKA 321 (792)
T ss_pred cCceEEEEec
Confidence 8999999975
No 226
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.43 E-value=7.5e-06 Score=88.12 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=83.9
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCC--CeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDD--NRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D--~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
.+|++||+.+|+.... ..+...+ ...+|+|| +..| ++.+.+ ..|++||+.++. .+.+..+..
T Consensus 214 ~~i~v~d~~~g~~~~~-~~~~~~~--~~~~~spD--------g~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~-- 278 (417)
T TIGR02800 214 PEIYVQDLATGQREKV-ASFPGMN--GAPAFSPD--------GSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPG-- 278 (417)
T ss_pred cEEEEEECCCCCEEEe-ecCCCCc--cceEECCC--------CCEEEEEECCCCCccEEEEECCCCC--EEECCCCCC--
Confidence 5799999999976443 3333332 23589999 4444 455544 469999998653 234432211
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECC-C--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-G--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-G--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
...+.+++++| +|+.++.. + .|.+||+.+++ ...+..++..+..++|||||++|+. +.+.
T Consensus 279 -------------~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 279 -------------IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred -------------CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 11234678888 67766653 3 57778876642 3345556677889999999999998 6655
Q ss_pred ---cEEEEEcc
Q 047036 485 ---YLILICTL 492 (634)
Q Consensus 485 ---tIrLWD~~ 492 (634)
.|.+||+.
T Consensus 344 ~~~~i~~~d~~ 354 (417)
T TIGR02800 344 GGFNIAVMDLD 354 (417)
T ss_pred CceEEEEEeCC
Confidence 67788854
No 227
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=2.8e-05 Score=94.82 Aligned_cols=166 Identities=11% Similarity=0.132 Sum_probs=100.8
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCC---------C-----cceeEEEEecCCCCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKD---------G-----TDITMRDITNDTKSSQ 371 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~---------~-----V~I~vvsfsPd~K~~q 371 (634)
.|..+.+...++.++++...+ ++|++||+.+|.+ ..+.|... . -+ .-++|+|+
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P-~GIavspd----- 750 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVT-RVFSGDGYERNLNGSSGTSTSFAQP-SGISLSPD----- 750 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeE-EEEecCCccccCCCCccccccccCc-cEEEEeCC-----
Confidence 465544433355666776554 5899999998865 34433210 0 00 12478888
Q ss_pred CCCCC-EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc---cc----cccc-cccCcceEEEEECCCC-eEEEEECC
Q 047036 372 LDPSE-STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH---WT----QGHQ-FSRGTNFQCFASTGDG-SIVVGSLD 441 (634)
Q Consensus 372 ~~~g~-~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~---~~----~g~~-y~~~~~fssva~s~dG-~IASGS~D 441 (634)
+. +.++-+.+++|++||+.+++. ..+.+ ..++.. .. .+.- -..-..-..++++++| .+++-+.+
T Consensus 751 ---G~~LYVADs~n~~Irv~D~~tg~~--~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 751 ---LKELYIADSESSSIRALDLKTGGS--RLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred ---CCEEEEEECCCCeEEEEECCCCcE--EEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 44 566777789999999987542 11211 111000 00 0000 0000112477889998 45667889
Q ss_pred CcEEEEeccccccccccccCC--------------CCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 442 GKIRLYSKTSMRQAKTAFPGL--------------GSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 442 GtIRLWD~~t~r~akt~L~GH--------------~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+.|++||..++. . .++.|. -....+|++++||+.+++ +.+++|++||+.
T Consensus 825 ~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 825 HKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 999999987642 2 223222 235689999999998888 899999999986
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.41 E-value=9e-07 Score=97.90 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=69.7
Q ss_pred EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE
Q 047036 361 RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS 439 (634)
Q Consensus 361 vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS 439 (634)
-+|+|| |..||+-|.|+.+||+|..+.. ++-. .|.|-- -+.|+|+|||| +||+|+
T Consensus 296 f~FS~D--------G~~LA~VSqDGfLRvF~fdt~e-Llg~-------------mkSYFG--GLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 296 FAFSPD--------GKYLATVSQDGFLRIFDFDTQE-LLGV-------------MKSYFG--GLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred eeEcCC--------CceEEEEecCceEEEeeccHHH-HHHH-------------HHhhcc--ceEEEEEcCCccEEEecC
Confidence 489999 6799999999999999987532 1111 233321 36899999999 899999
Q ss_pred CCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036 440 LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT 472 (634)
Q Consensus 440 ~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS 472 (634)
.|--|-+|.....| ....=.||..+|..|+|-
T Consensus 352 EDDLVtVwSf~erR-VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 352 EDDLVTVWSFEERR-VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred CcceEEEEEeccce-EEEeccccccceeeEeec
Confidence 99999999987743 666677999999999998
No 229
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.37 E-value=1.4e-05 Score=88.74 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=96.4
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
|.......++++-++.+-. +.|++=-+.-.-.+-.|+.|.+.| -.++++|. +++|+||+.|..
T Consensus 147 ~v~c~~W~p~S~~vl~c~g-------~h~~IKpL~~n~k~i~WkAHDGii--L~~~W~~~--------s~lI~sgGED~k 209 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG-------GHISIKPLAANSKIIRWRAHDGLV--LSLSWSTQ--------SNIIASGGEDFR 209 (737)
T ss_pred eeEEEEECCCCCceEEecC-------CeEEEeecccccceeEEeccCcEE--EEeecCcc--------ccceeecCCcee
Confidence 4444455555665555544 357776666555677899999876 34599987 689999999999
Q ss_pred EEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCe
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPI 466 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~I 466 (634)
.++||.... .+ -+ + + .+.++++++++.|+-..|+||. ++.||=. + -.+.|
T Consensus 210 fKvWD~~G~-~L-f~-----S------~----~~ey~ITSva~npd~~~~v~S~-nt~R~~~---p---------~~GSi 259 (737)
T KOG1524|consen 210 FKIWDAQGA-NL-FT-----S------A----AEEYAITSVAFNPEKDYLLWSY-NTARFSS---P---------RVGSI 259 (737)
T ss_pred EEeecccCc-cc-cc-----C------C----hhccceeeeeeccccceeeeee-eeeeecC---C---------Cccce
Confidence 999998642 11 11 1 1 2445789999999977888887 5777311 2 24579
Q ss_pred EEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 467 THVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 467 tsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
..|++||||..+++ +.-+.|.+-.+
T Consensus 260 fnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 260 FNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred EEEEEcCCCceeeccccCceEEEeee
Confidence 99999999999999 55666555443
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=2.5e-05 Score=90.48 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=125.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCC------
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGD------ 406 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~------ 406 (634)
.+|.++-+.||.+++.|.+|...+. + +.+.|..-- -..+++++.||+|++||-+.+. +++++.-+.
T Consensus 37 ~~V~VyS~~Tg~~i~~l~~~~a~l~-s-~~~~~~~~~-----~~~~~~~sl~G~I~vwd~~~~~-Llkt~~~~~~v~~~~ 108 (792)
T KOG1963|consen 37 NFVKVYSTATGECITSLEDHTAPLT-S-VIVLPSSEN-----ANYLIVCSLDGTIRVWDWSDGE-LLKTFDNNLPVHALV 108 (792)
T ss_pred CEEEEEecchHhhhhhcccccCccc-e-eeecCCCcc-----ceEEEEEecCccEEEecCCCcE-EEEEEecCCceeEEE
Confidence 4799999999999999999999873 4 477775210 1467899999999999988642 222221110
Q ss_pred ------C-Cccc--cc---------------cccccc------cCcc-------eEEEEECCCCeEEEEECCCcEEEEec
Q 047036 407 ------S-PVLH--WT---------------QGHQFS------RGTN-------FQCFASTGDGSIVVGSLDGKIRLYSK 449 (634)
Q Consensus 407 ------s-~V~~--~~---------------~g~~y~------~~~~-------fssva~s~dG~IASGS~DGtIRLWD~ 449 (634)
. ++.. +. ++..+. ...+ =.++..++.|.++.--.+..|.+|..
T Consensus 109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v 188 (792)
T KOG1963|consen 109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV 188 (792)
T ss_pred echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe
Confidence 0 0000 00 000000 0001 14567777887777777788899997
Q ss_pred cccccccccc-----cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCC
Q 047036 450 TSMRQAKTAF-----PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPL 523 (634)
Q Consensus 450 ~t~r~akt~L-----~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe 523 (634)
.... +.+. .-|.-+|+++++||+|++||+ -.|+.|++|.-. |. .+.+-.+++|...-.
T Consensus 189 ~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~-----~~---------~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 189 PKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF-----GS---------SDDSETCTLLHWHHD 252 (792)
T ss_pred cccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc-----cc---------ccccccceEEEeccc
Confidence 6521 2211 248888999999999999999 789999999732 10 122334556654422
Q ss_pred CccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036 524 DSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 524 ~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~ 569 (634)
- ...++|++. | ...+.++..+-+++|.++.-+
T Consensus 253 ~----V~~L~fS~~--------G--~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 253 E----VNSLSFSSD--------G--AYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred c----cceeEEecC--------C--ceEeecccceEEEEEeecCCC
Confidence 1 234677655 3 344555778889999998644
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.36 E-value=3.5e-05 Score=82.96 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=83.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|++||.. |...+.+..|...+ ...+|+|| |+.|+.++.. ..|++||+.++.. ..+..+..
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~--~~p~~Spd--------g~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~-- 234 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPI--LSPAWSPD--------GQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPG-- 234 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCce--ecccCCCC--------CCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCC--
Confidence 579999986 55556666666543 23489999 5667766544 5899999987642 22221111
Q ss_pred cccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
...+++++|+| .|+ +.+.++ .|.+||+.++ ....+..|...+.+.+|+|||++|+. +. .
T Consensus 235 -------------~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~ 299 (417)
T TIGR02800 235 -------------MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG 299 (417)
T ss_pred -------------CccceEECCCCCEEEEEECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCC
Confidence 12346789998 565 445544 5889998764 23445556666678899999999987 43 3
Q ss_pred C--cEEEEEc
Q 047036 484 T--YLILICT 491 (634)
Q Consensus 484 ~--tIrLWD~ 491 (634)
+ .|.+||+
T Consensus 300 g~~~iy~~d~ 309 (417)
T TIGR02800 300 GSPQIYMMDA 309 (417)
T ss_pred CCceEEEEEC
Confidence 3 3555564
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.36 E-value=2.1e-05 Score=88.90 Aligned_cols=206 Identities=17% Similarity=0.247 Sum_probs=127.8
Q ss_pred EEEeee-CCCe--EEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 258 SLTLGA-LDNS--FLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 258 ~LavG~-~D~s--fvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
.--++| ||++ +++.|+++-||...+++ ...++.+|+. -+..+.++.|+.+..+++.| +.
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~-----llqtLKgHKD-------tVycVAys~dGkrFASG~aD------K~ 76 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGT-----LLQPLKGHKD-------TVYCVAYAKDGKRFASGSAD------KS 76 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCcc-----cccccccccc-------eEEEEEEccCCceeccCCCc------ee
Confidence 455788 8886 45578999999977665 2335566632 12233444555556666665 57
Q ss_pred EEEEeCCCCcEEEEEeccCCC-------------------------------------cceeEEEEecCCCCCCCCCCCE
Q 047036 335 VQQLDIETGKIVTEWKFEKDG-------------------------------------TDITMRDITNDTKSSQLDPSES 377 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~-------------------------------------V~I~vvsfsPd~K~~q~~~g~~ 377 (634)
|.+|...-.-+++ + .|.+. ++++..+++.| |++
T Consensus 77 VI~W~~klEG~Lk-Y-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--------Gqy 146 (1081)
T KOG1538|consen 77 VIIWTSKLEGILK-Y-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--------GQY 146 (1081)
T ss_pred EEEecccccceee-e-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--------CcE
Confidence 7788743211111 1 23332 22333455555 789
Q ss_pred EEEEeCCCeEEEEEcCCCCc-eEEecccCCCC-------------------ccccccccccc----------cCcce--E
Q 047036 378 TFLGLDDNRLCQWDMRDRSG-IVQNMVKGDSP-------------------VLHWTQGHQFS----------RGTNF--Q 425 (634)
Q Consensus 378 laSGS~D~tIklWD~R~~~~-~Vq~l~gh~s~-------------------V~~~~~g~~y~----------~~~~f--s 425 (634)
++.|..++||-+=+.....+ .++.-.|.+++ |.+|++.-.|- ....| .
T Consensus 147 lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~ 226 (1081)
T KOG1538|consen 147 LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPC 226 (1081)
T ss_pred EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCch
Confidence 99999999998865432211 12222222222 44565432211 12223 4
Q ss_pred EEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036 426 CFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 426 sva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
|+..-++| ++..|+.|+.+++|.+.+.+ .-++.....+|++|.+.|+|++++- ..|+||--+++.+
T Consensus 227 CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 227 CISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred hheeccCCcEEEEccCCCceEEEeecCeE--EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 55556788 99999999999999988764 3445556679999999999999998 6699998887653
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=5.1e-05 Score=81.24 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=94.5
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD 384 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D 384 (634)
.|..-|-.+.|+..++.++-++ ..|++||+.+|..+.- +++-.+ ++++.|||| +..++.+.-|
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gs-----ssi~iWdpdtg~~~pL~~~glgg---~slLkwSPd--------gd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGS-----SSIMIWDPDTGQKIPLIPKGLGG---FSLLKWSPD--------GDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCc-----ceEEEEcCCCCCcccccccCCCc---eeeEEEcCC--------CCEEEEeccc
Confidence 5777777777777777777654 7899999999987764 355443 468899999 7899999999
Q ss_pred CeEEEEEc-CCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccc--------
Q 047036 385 NRLCQWDM-RDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMR-------- 453 (634)
Q Consensus 385 ~tIklWD~-R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r-------- 453 (634)
.+.++|.. ++-.+.-..+ +. . .++..+.+|.| +| .+.+ |.=+||.+.-..
T Consensus 260 avfrlw~e~q~wt~erw~l------------gs----g-rvqtacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 260 AVFRLWQENQSWTKERWIL------------GS----G-RVQTACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred ceeeeehhcccceecceec------------cC----C-ceeeeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCc
Confidence 99999953 3322211111 11 1 35667778887 33 3333 333455543100
Q ss_pred ------------cccccccC---CCCCeEEEEECCCCCEEEEEcCCc
Q 047036 454 ------------QAKTAFPG---LGSPITHVDVTYDGKWILGTTDTY 485 (634)
Q Consensus 454 ------------~akt~L~G---H~d~ItsVdfSpDGk~LlSS~D~t 485 (634)
+..+...| .++++.+|++-|-|.|||.+..+.
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 01111122 357899999999999999866544
No 234
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.26 E-value=0.00013 Score=87.39 Aligned_cols=264 Identities=18% Similarity=0.186 Sum_probs=152.4
Q ss_pred CcEEEeeeCCCeEEEecC---eeeEEEccCCceecce--eEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 256 VQSLTLGALDNSFLVSDL---GLQVYRNYNRGIHNKG--VSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 256 ~~~LavG~~D~sfvv~G~---~igV~k~~~~gl~~~~--~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+.+|+-.++.+|.+.|+ .|+||+... +.+++ +.-.+.-+ + .| ++...+-+-+.++.++.++.|
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~rS~ltys-~-~~---sr~~~vt~~~~~~~~Av~t~D---- 1119 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSARSELTYS-P-EG---SRVEKVTMCGNGDQFAVSTKD---- 1119 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceeeeeEEEe-c-cC---CceEEEEeccCCCeEEEEcCC----
Confidence 347777777889999886 555665422 22221 11111100 0 11 122233333445556666544
Q ss_pred CCCcEEEEeCCC-------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc
Q 047036 331 QAPGVQQLDIET-------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV 403 (634)
Q Consensus 331 ~~~TIrlWDleT-------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~ 403 (634)
|.|++.++.. +.+++...-+..++-+.+.+|....+ ...++-+..-+.|-.||+|+... +..+.
T Consensus 1120 --G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~------S~~lvy~T~~~~iv~~D~r~~~~-~w~lk 1190 (1431)
T KOG1240|consen 1120 --GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ------SHVLVYATDLSRIVSWDTRMRHD-AWRLK 1190 (1431)
T ss_pred --CeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc------ceeEEEEEeccceEEecchhhhh-HHhhh
Confidence 7899999876 34556666666665445555555422 23788888999999999998642 22221
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc--ccccCCCCCeEEEEECCC---CCE
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK--TAFPGLGSPITHVDVTYD---GKW 477 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak--t~L~GH~d~ItsVdfSpD---Gk~ 477 (634)
++..++ -++++|++|.+ .+++|+.-|.+-|||++- +... -..| |.-+|+.|...|- ..+
T Consensus 1191 ------------~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~ 1255 (1431)
T KOG1240|consen 1191 ------------NQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEHP-ARAPIRHVWLCPTYPQESV 1255 (1431)
T ss_pred ------------cCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccCc-ccCCcceEEeeccCCCCce
Confidence 122222 37889999988 799999999999999763 2222 2344 4478998887754 357
Q ss_pred EEE-E--cCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE
Q 047036 478 ILG-T--TDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA 554 (634)
Q Consensus 478 LlS-S--~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt 554 (634)
+++ + .-+-|-+|+.. +|.+.+.|-..- ++|-+--..|-........+.-..+.+. -+ +...+.+
T Consensus 1256 ~vs~~~~~~nevs~wn~~----~g~~~~vl~~s~----~~p~ls~~~Ps~~~~kp~~~~~~~~~~~--~~---~~~~ltg 1322 (1431)
T KOG1240|consen 1256 SVSAGSSSNNEVSTWNME----TGLRQTVLWASD----GAPILSYALPSNDARKPDSLAGISCGVC--EK---NGFLLTG 1322 (1431)
T ss_pred EEEecccCCCceeeeecc----cCcceEEEEcCC----CCcchhhhcccccCCCCCcccceeeecc--cC---Cceeeec
Confidence 776 3 57889999986 677777776441 1222211222221110011111222232 11 2245666
Q ss_pred EcCCeEEEEeChh
Q 047036 555 TVGKFSVIWDFQQ 567 (634)
Q Consensus 555 Stg~~viiWdl~~ 567 (634)
++|..|.-||...
T Consensus 1323 gsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTR 1335 (1431)
T ss_pred CCccceeeccCCC
Confidence 8899999999864
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00017 Score=80.24 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=74.7
Q ss_pred CcEEEEeCCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCe--EEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNR--LCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~t--IklWD~R~~~~~Vq~l~gh~s 407 (634)
..|++||+.+|+.. ..+.++.. ...|+|| |+.| ++.+.++. |++||+.++. ++.+..+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~-----~~~wSPD--------G~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~ 306 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING-----APRFSPD--------GKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRA 306 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC-----CeeECCC--------CCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCC
Confidence 47999999998753 33444332 2489999 4545 45566664 8888987653 234432111
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
.....+++||| +|+..+. +| .|.++|+.+++ .. .+.-.+....+.+|||||++|+. +.
T Consensus 307 ---------------~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 307 ---------------IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VS-RLTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ---------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EE-EEecCCCCCcCeeECCCCCEEEEEEe
Confidence 12345788998 6765553 44 46666776653 22 22222333456899999999987 44
Q ss_pred -CCcEEEE
Q 047036 483 -DTYLILI 489 (634)
Q Consensus 483 -D~tIrLW 489 (634)
.+...||
T Consensus 370 ~~g~~~I~ 377 (448)
T PRK04792 370 TNGKFNIA 377 (448)
T ss_pred cCCceEEE
Confidence 3444444
No 236
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.25 E-value=1.5e-06 Score=63.06 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=34.0
Q ss_pred ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 455 AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 455 akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
++.+|.+|..+|++|+|+|++++|++ +.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56789999999999999999999999 9999999997
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.00015 Score=79.13 Aligned_cols=129 Identities=14% Similarity=0.059 Sum_probs=83.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|.++|.. |...+.+..|...+ ...+|+|| |+.|+..+.+ ..|.+||+.++.. +.+....
T Consensus 179 ~~l~~~d~~-g~~~~~l~~~~~~~--~~p~wSpD--------G~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~--- 242 (430)
T PRK00178 179 YTLQRSDYD-GARAVTLLQSREPI--LSPRWSPD--------GKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFE--- 242 (430)
T ss_pred eEEEEECCC-CCCceEEecCCCce--eeeeECCC--------CCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCC---
Confidence 469999998 44456666666543 34589999 5667665543 3699999987642 2332100
Q ss_pred cccccccccccCcceEEEEECCCC-eEE-EEECCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIV-VGSLDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IA-SGS~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
+ ...+.+++|+| +|| +.+.+| .|.+||+.+++ .+.|..+...+.+..|||||++|+. +. +
T Consensus 243 -----g-------~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 243 -----G-------LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred -----C-------CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCC
Confidence 1 12346789999 676 455555 68888988752 3446666666778999999999987 43 2
Q ss_pred C--cEEEEEc
Q 047036 484 T--YLILICT 491 (634)
Q Consensus 484 ~--tIrLWD~ 491 (634)
+ .|.++|+
T Consensus 309 g~~~iy~~d~ 318 (430)
T PRK00178 309 GKPQIYKVNV 318 (430)
T ss_pred CCceEEEEEC
Confidence 3 3555554
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00021 Score=78.13 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=77.4
Q ss_pred CcEEEEeCCCCcEEE--EEeccCCCcceeEEEEecCCCCCCCCCCCEEE-EEeCCC--eEEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGKIVT--EWKFEKDGTDITMRDITNDTKSSQLDPSESTF-LGLDDN--RLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V~--~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la-SGS~D~--tIklWD~R~~~~~Vq~l~gh~s 407 (634)
..|++||+.+|+..+ .+.++. ...+|+|| |+.|+ +.+.++ .|++||+.++. ++.+..+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-----~~~~~SpD--------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~ 287 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-----GAPAWSPD--------GSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPA 287 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-----CCeEECCC--------CCEEEEEEccCCCceEEEEECCCCC--eEEcccCCC
Confidence 479999999997543 233332 23489999 45554 555554 68899998754 234432111
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
......++|+| +|+..+. +| .|.+||+.+++ ... +...+......+|||||++|+- +.
T Consensus 288 ---------------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~-lt~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 288 ---------------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AER-VTFVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ---------------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEE-eecCCCCccceEECCCCCEEEEEEc
Confidence 12334678998 6766654 33 57777876653 222 2212233456789999999987 44
Q ss_pred C-C--cEEEEEcc
Q 047036 483 D-T--YLILICTL 492 (634)
Q Consensus 483 D-~--tIrLWD~~ 492 (634)
+ + .|.+||+.
T Consensus 351 ~~~~~~l~~~dl~ 363 (430)
T PRK00178 351 QDGNFHVAAQDLQ 363 (430)
T ss_pred cCCceEEEEEECC
Confidence 3 2 47777753
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.21 E-value=7.4e-06 Score=90.82 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=63.3
Q ss_pred eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCee
Q 047036 424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTK 501 (634)
Q Consensus 424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~ 501 (634)
+..+||++|| +||+-|.||.+||||-.++. ....++..-....+|++||||+|||+ +.|.-|-+|... .++.+
T Consensus 293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~----erRVV 367 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE----ERRVV 367 (636)
T ss_pred ccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec----cceEE
Confidence 4566899999 89999999999999987753 55555555567899999999999999 999999999875 44444
Q ss_pred eeecCCC
Q 047036 502 TGFSGRM 508 (634)
Q Consensus 502 ~gF~gh~ 508 (634)
..=.||-
T Consensus 368 ARGqGHk 374 (636)
T KOG2394|consen 368 ARGQGHK 374 (636)
T ss_pred Eeccccc
Confidence 4444443
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.19 E-value=3.7e-05 Score=80.45 Aligned_cols=134 Identities=16% Similarity=0.223 Sum_probs=87.3
Q ss_pred CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceE-EecccCCCCc
Q 047036 333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIV-QNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~V-q~l~gh~s~V 409 (634)
+.+..-+...+.+ +++|++|.-. +.+..|+.. . .+++++|++|+.+..||+|..+..+ +...-|
T Consensus 143 G~~~~v~~t~~~le~vq~wk~He~E--~Wta~f~~~------~-pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH---- 209 (339)
T KOG0280|consen 143 GSISGVYETEMVLEKVQTWKVHEFE--AWTAKFSDK------E-PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH---- 209 (339)
T ss_pred CcEEEEecceeeeeeccccccccee--eeeeecccC------C-CceEEecCCCceEEEEEecCCcceeeecceee----
Confidence 4566555444443 4489999875 356567643 2 3799999999999999999654322 111112
Q ss_pred cccccccccccCcceEEEEECC-CC-eEEEEECCCcEEEEecccccccccccc-CCCCCeEEEEECCCC--CEEEEEcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTG-DG-SIVVGSLDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDG--KWILGTTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~-dG-~IASGS~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDG--k~LlSS~D~ 484 (634)
..-+.|+-.+| .+ +||+||.|-.||+||.+.+.+ ..++ ..++.|+.|.-+|-= +.|++.|=+
T Consensus 210 -----------~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--Pl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 210 -----------TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--PLFKAKVGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred -----------ecceEEEecCCCCCceEEEeccccceeeeehhcccC--ccccCccccceEEEEecchhhhHHHHHHHhc
Confidence 22345555554 56 899999999999999876532 2333 245779999888753 334456666
Q ss_pred cEEEEEcc
Q 047036 485 YLILICTL 492 (634)
Q Consensus 485 tIrLWD~~ 492 (634)
-.+|-+..
T Consensus 277 G~ki~~~~ 284 (339)
T KOG0280|consen 277 GAKILDSS 284 (339)
T ss_pred CceEEEec
Confidence 66776653
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=2.3e-05 Score=83.86 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=96.9
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc---eEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG---IVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~---~Vq~l~gh~s~V 409 (634)
.+||++|-.. ++...++..... +|..++|-|-+ +..++.|+.- .|++|-...... .+.....|...|
T Consensus 120 dvVriy~kss-t~pt~Lks~sQr-nvtclawRPls-------aselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qv 189 (445)
T KOG2139|consen 120 DVVRIYDKSS-TCPTKLKSVSQR-NVTCLAWRPLS-------ASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQV 189 (445)
T ss_pred cEEEEeccCC-CCCceecchhhc-ceeEEEeccCC-------cceeeeeecc-eeEEEEcCcccccccccccccccchhh
Confidence 4899999876 777777754443 36778999974 3467777754 689996542211 111112222222
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEecccccccccccc-CCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTSMRQAKTAFP-GLGSPITHVDVTYDGKWILG-TTDTY 485 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t~r~akt~L~-GH~d~ItsVdfSpDGk~LlS-S~D~t 485 (634)
+ ++...++++++...+|| .++++| .|..|+|||+.++ .+..|+ --...+.=|-|||||.||.+ ++|..
T Consensus 190 l------~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 190 L------QDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred e------eCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCC--CcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 2 23344678999999999 788888 4678999999885 344444 22345788999999999998 99999
Q ss_pred EEEEE
Q 047036 486 LILIC 490 (634)
Q Consensus 486 IrLWD 490 (634)
.+||.
T Consensus 262 frlw~ 266 (445)
T KOG2139|consen 262 FRLWQ 266 (445)
T ss_pred eeeeh
Confidence 99993
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=3.3e-05 Score=85.00 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=99.4
Q ss_pred ceEEecCCCCCCCCCCcEEEEe-CCCCcEE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLD-IETGKIV--TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWD-leTGK~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
..|++++.| +.||+=- +++|.+. ..+--|.+.|. .+++-|++ ...+.|++.|+.++-.|+|.
T Consensus 200 ~ti~~~s~d------gqvr~s~i~~t~~~e~t~rl~~h~g~vh--klav~p~s-------p~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 200 RTIVTSSRD------GQVRVSEILETGYVENTKRLAPHEGPVH--KLAVEPDS-------PKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred cCceecccc------CceeeeeeccccceecceecccccCccc--eeeecCCC-------CCcccccccccceeeeeecc
Confidence 345566554 6788766 3667665 34666888764 55777873 25799999999999999997
Q ss_pred CCceEEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccccccc------cccccCC---C
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQA------KTAFPGL---G 463 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~a------kt~L~GH---~ 463 (634)
... ...+. +..+.-...+...+++.+|-. .+|+|+.|--+|+||.+..+.. +.-+|-| .
T Consensus 265 ~~p-a~~~~---------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d 334 (559)
T KOG1334|consen 265 DVP-AEKFV---------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVED 334 (559)
T ss_pred CCc-cceee---------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccccc
Confidence 642 11111 011111123456788888864 6999999999999997653211 2222222 1
Q ss_pred --CCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 464 --SPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 464 --d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
--|+++.+|.+|.-|++ =.|--|.|+.-.
T Consensus 335 ~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 335 DPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred CcccceeEEecCCccceeeeecccceEEeccc
Confidence 24899999999988887 578889888533
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.15 E-value=0.00034 Score=76.23 Aligned_cols=154 Identities=16% Similarity=0.229 Sum_probs=93.8
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEE
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWD 391 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD 391 (634)
++.|++.++..+.| +.|.++|+.+++++++.+..... .. +++||| |++++++ ...++|.++|
T Consensus 44 ~s~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~~G~~~--~~-i~~s~D--------G~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 44 FSPDGRYLYVANRD------GTVSVIDLATGKVVATIKVGGNP--RG-IAVSPD--------GKYVYVANYEPGTVSVID 106 (369)
T ss_dssp -TT-SSEEEEEETT------SEEEEEETTSSSEEEEEE-SSEE--EE-EEE--T--------TTEEEEEEEETTEEEEEE
T ss_pred ecCCCCEEEEEcCC------CeEEEEECCcccEEEEEecCCCc--ce-EEEcCC--------CCEEEEEecCCCceeEec
Confidence 34445555555443 68999999999999999887663 24 499999 5566655 5799999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECC-CcEEEEeccccccccccccCCCCCeEEE
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD-GKIRLYSKTSMRQAKTAFPGLGSPITHV 469 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D-GtIRLWD~~t~r~akt~L~GH~d~ItsV 469 (634)
.++.+ +++.+.....+. . ....++.++..++.. .+++.-.| +.|-+-|....+..+.+....+......
T Consensus 107 ~~tle-~v~~I~~~~~~~-----~---~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 107 AETLE-PVKTIPTGGMPV-----D---GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp TTT---EEEEEE--EE-T-----T---TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred ccccc-ceeecccccccc-----c---ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 98854 456653211000 0 023356777777776 45555444 7777778655433344444456677889
Q ss_pred EECCCCCEEEE--EcCCcEEEEEcc
Q 047036 470 DVTYDGKWILG--TTDTYLILICTL 492 (634)
Q Consensus 470 dfSpDGk~LlS--S~D~tIrLWD~~ 492 (634)
.|+|||+|++. -..+.|-++|+.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccCcccceeeecccccceeEEEeec
Confidence 99999999765 457789999975
No 244
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.15 E-value=0.00077 Score=82.59 Aligned_cols=168 Identities=9% Similarity=0.041 Sum_probs=99.1
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccC--C--------------CcceeEEEEecCCC
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEK--D--------------GTDITMRDITNDTK 368 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~--~--------------~V~I~vvsfsPd~K 368 (634)
..|.++.+...+..++++...+ ..|+++|+.+|+ |.++.+-. . .-+ .-++|+|+.
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n------~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P-~gVa~dp~~- 694 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTEN------HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSP-WDVCFEPVN- 694 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCC------ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCC-eEEEEecCC-
Confidence 3577765543333456666543 579999998765 55553310 0 001 124888851
Q ss_pred CCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccccc--ccCcceEEEEECCCC-eE-EEEECCCcE
Q 047036 369 SSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQF--SRGTNFQCFASTGDG-SI-VVGSLDGKI 444 (634)
Q Consensus 369 ~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y--~~~~~fssva~s~dG-~I-ASGS~DGtI 444 (634)
+.+.++.+.+++|++||+..+. +..+.+...... . .++.. ..-..-..++++++| +| ++-+.++.|
T Consensus 695 ------g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~~~-~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 695 ------EKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYERN-L-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred ------CeEEEEECCCCeEEEEECCCCe--EEEEecCCcccc-C-CCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 4577788889999999997653 334432211000 0 00000 000123467889987 45 455778999
Q ss_pred EEEeccccccccc-------------ccc---C-----CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 445 RLYSKTSMRQAKT-------------AFP---G-----LGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 445 RLWD~~t~r~akt-------------~L~---G-----H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
|+||+.++. ... .+. | +...-.+|+|++||+..++ +.+++|++||..
T Consensus 765 rv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 765 RALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred EEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 999987532 110 000 0 0012369999999998888 889999999964
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.00024 Score=78.66 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=78.6
Q ss_pred CcEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-----CCeEEEEEcCCC--CceEEecc
Q 047036 333 PGVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-----DNRLCQWDMRDR--SGIVQNMV 403 (634)
Q Consensus 333 ~TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----D~tIklWD~R~~--~~~Vq~l~ 403 (634)
..|++.|+.+|+. |..+.++.. .-+|+|| |..|+..++ |-.+.+||+..+ +...+...
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~-----~p~wSPD--------G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~ 277 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQL-----MPTFSPR--------KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN 277 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCcc-----ceEECCC--------CCEEEEEECCCCCcceeEEEeecccCCCCcceEeec
Confidence 4799999998864 344555432 2489999 455554442 334555777643 12212211
Q ss_pred cCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEec--cccccccccccCCCCCeEEEEECCCCCEEE
Q 047036 404 KGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSK--TSMRQAKTAFPGLGSPITHVDVTYDGKWIL 479 (634)
Q Consensus 404 gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~--~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll 479 (634)
++ + ......+++||| +||..+ .+|..+||.. .........|..+...+...+|||||++|+
T Consensus 278 ~~------------~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La 342 (428)
T PRK01029 278 EA------------F---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA 342 (428)
T ss_pred CC------------C---CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence 10 0 011345789999 677666 5777677753 211012344555566788999999999998
Q ss_pred E-EcC---CcEEEEEcc
Q 047036 480 G-TTD---TYLILICTL 492 (634)
Q Consensus 480 S-S~D---~tIrLWD~~ 492 (634)
. +.+ ..|.+||+.
T Consensus 343 f~~~~~g~~~I~v~dl~ 359 (428)
T PRK01029 343 FCSVIKGVRQICVYDLA 359 (428)
T ss_pred EEEcCCCCcEEEEEECC
Confidence 7 443 468888864
No 246
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.13 E-value=7e-06 Score=59.51 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=35.3
Q ss_pred CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
|+++++|++|...| ..++|+|+ +.++++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i--~~i~~~~~--------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSI--NSIAWSPD--------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSE--EEEEEETT--------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcE--EEEEEecc--------cccceeeCCCCEEEEEC
Confidence 68999999999986 46699998 68999999999999998
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00042 Score=77.56 Aligned_cols=130 Identities=13% Similarity=0.166 Sum_probs=91.7
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
..+|++++++.-.++-.+.... . |..+.|+|+++ .=-++-|-.--++-+.|+|. .+|..+.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~G-P--Vhdv~W~~s~~------EF~VvyGfMPAkvtifnlr~--~~v~df~-------- 310 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEG-P--VHDVTWSPSGR------EFAVVYGFMPAKVTIFNLRG--KPVFDFP-------- 310 (566)
T ss_pred cceEEEEEecCceEEEecCCCC-C--ceEEEECCCCC------EEEEEEecccceEEEEcCCC--CEeEeCC--------
Confidence 3589999999556666665433 2 46679999843 01355566788999999973 4555553
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEEC---CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec----
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT---- 482 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~---- 482 (634)
+| +-.++-|+|.| +|+.|+. -|.|-+||+.+. .++..+.... -+-++++|||+|+++ |+
T Consensus 311 --eg-------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRl 378 (566)
T KOG2315|consen 311 --EG-------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRL 378 (566)
T ss_pred --CC-------CccceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccE
Confidence 11 12466789999 5666664 579999999884 4666666433 356899999999998 55
Q ss_pred --CCcEEEEEcc
Q 047036 483 --DTYLILICTL 492 (634)
Q Consensus 483 --D~tIrLWD~~ 492 (634)
|+-++||+..
T Consensus 379 rvdNg~Kiwhyt 390 (566)
T KOG2315|consen 379 RVDNGIKIWHYT 390 (566)
T ss_pred EecCCeEEEEec
Confidence 8999999963
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=7.3e-05 Score=82.39 Aligned_cols=253 Identities=10% Similarity=0.070 Sum_probs=155.1
Q ss_pred ceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 308 KKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 308 ~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
...+.+++.+..|+++++| .+|.+||-.+++.+-.| .||...|- --.|-|.+ +.+.|++++.|+.
T Consensus 145 VntV~FN~~Gd~l~SgSDD------~~vv~WdW~~~~~~l~f~SGH~~Nvf--QaKFiP~s------~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 145 VNTVHFNQRGDVLASGSDD------LQVVVWDWVSGSPKLSFESGHCNNVF--QAKFIPFS------GDRTIVTSSRDGQ 210 (559)
T ss_pred cceeeecccCceeeccCcc------ceEEeehhhccCcccccccccccchh--hhhccCCC------CCcCceeccccCc
Confidence 4567788888888888876 69999999999988777 57887652 22566652 2468999999999
Q ss_pred EEEEEcCCCCce--EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccccccccccc--
Q 047036 387 LCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFP-- 460 (634)
Q Consensus 387 IklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~-- 460 (634)
|++=-+-..+++ +..+..|..+ +.-+|.-|+. .+.+++.|+.+.=.|++..+ +...+.
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~---------------vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-pa~~~~cr 274 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGP---------------VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-PAEKFVCR 274 (559)
T ss_pred eeeeeeccccceecceecccccCc---------------cceeeecCCCCCcccccccccceeeeeeccCC-ccceeeee
Confidence 998654432221 2233334333 3344556665 58999999999999987653 333222
Q ss_pred -CCCC---CeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccc
Q 047036 461 -GLGS---PITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKI 534 (634)
Q Consensus 461 -GH~d---~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~F 534 (634)
.+.. ...+|++.|-..+..+ ++|.++|++|.+-.+ .+..++-. -+..|.|... -..+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~--~e~~n~~~------------~~f~p~hl~~-d~~v~I 339 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRID--KEENNGVL------------DKFCPHHLVE-DDPVNI 339 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchh--hccccchh------------hhcCCccccc-cCcccc
Confidence 2333 4578999999886655 899999999976322 11111111 1223444323 245677
Q ss_pred ccccccccccCCCCceEEEEEcCCeEEEEeChhhhcc-cccccccccCCcceeeEEEeccCCCeeeecccc--CccccCC
Q 047036 535 HGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNS-AHECYRNQQGLKSCYCYKIVLKDESIVESRFMH--DKFAVTD 611 (634)
Q Consensus 535 t~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~-~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~--d~f~~~~ 611 (634)
+.+.|+.. + ...+++-.|-+|++++ +....| .+++--..+-+-.| -|+=-+....|..++|-- .+|+++.
T Consensus 340 Tgl~Ysh~---~--sElLaSYnDe~IYLF~-~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNFfGPrsEyVvSG 412 (559)
T KOG1334|consen 340 TGLVYSHD---G--SELLASYNDEDIYLFN-KSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNFFGPRSEYVVSG 412 (559)
T ss_pred eeEEecCC---c--cceeeeecccceEEec-cccccCCCCCCCcchhhccch-hhcccccccccceeeeccCccceEEec
Confidence 78888852 1 2477887899999984 333333 11100000011111 155556667788888855 4566654
Q ss_pred C
Q 047036 612 S 612 (634)
Q Consensus 612 ~ 612 (634)
+
T Consensus 413 S 413 (559)
T KOG1334|consen 413 S 413 (559)
T ss_pred C
Confidence 3
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.98 E-value=0.0025 Score=68.27 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCcEEEeee-CCCeEEEe----cCeeeEEEccCCceecce-eEEEecCCCCCc--ccccCcceeeEEeCCcceEEecCCC
Q 047036 255 GVQSLTLGA-LDNSFLVS----DLGLQVYRNYNRGIHNKG-VSVRFDGGSSKI--GSNSTPKKALLMRGETNMMLMSPLK 326 (634)
Q Consensus 255 ~~~~LavG~-~D~sfvv~----G~~igV~k~~~~gl~~~~-~~~~~~~~~~~~--g~~fsP~~~mL~~~D~~mllsss~d 326 (634)
+....-++. +|+.|++- +..|.||....+|..... ....+.+..+.. ...-.| +.+.++++++.++.....
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~-H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP-HQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE-EEEEE-TTSSEEEEEETT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc-eeEEECCCCCEEEEEecC
Confidence 334334444 56665542 578999998777632221 122222211100 111112 234445565655543221
Q ss_pred CCCCCCCcEEEEeCCCCc--EE--EEEeccCCCcceeEEEEecCCCCCCCCCCCEE-EEEeCCCeEEEEEcCCCC-c--e
Q 047036 327 DGKPQAPGVQQLDIETGK--IV--TEWKFEKDGTDITMRDITNDTKSSQLDPSEST-FLGLDDNRLCQWDMRDRS-G--I 398 (634)
Q Consensus 327 ~~~~~~~TIrlWDleTGK--~V--~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~l-aSGS~D~tIklWD~R~~~-~--~ 398 (634)
. ..|+++++..+. +. ..+....+.-+ .-+.|+|++ ..+ ++.-.+++|.++++.... . .
T Consensus 165 ~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~GP-Rh~~f~pdg--------~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 165 A-----DRVYVYDIDDDTGKLTPVDSIKVPPGSGP-RHLAFSPDG--------KYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp T-----TEEEEEEE-TTS-TEEEEEEEECSTTSSE-EEEEE-TTS--------SEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred C-----CEEEEEEEeCCCceEEEeeccccccCCCC-cEEEEcCCc--------CEEEEecCCCCcEEEEeecccCCceeE
Confidence 1 379999886654 53 34443333323 345999984 444 455668999999988322 1 2
Q ss_pred EEecccCCCCccccccccccccCcceEEEEECCCC-eEEE-EECCCcEEEEecc--ccc-cccccccCCCCCeEEEEECC
Q 047036 399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGKIRLYSKT--SMR-QAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGtIRLWD~~--t~r-~akt~L~GH~d~ItsVdfSp 473 (634)
++.+.-. ...+.....-..++++||| +|.+ --..++|-+|++. +++ .....++..+...+++.|+|
T Consensus 231 ~~~~~~~---------~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 231 IQTISTL---------PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp EEEEESC---------ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T
T ss_pred EEEeeec---------cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC
Confidence 2222100 0011112235678999999 5544 4577899999983 221 12234444466689999999
Q ss_pred CCCEEEEE--cCCcEEEEEcc
Q 047036 474 DGKWILGT--TDTYLILICTL 492 (634)
Q Consensus 474 DGk~LlSS--~D~tIrLWD~~ 492 (634)
||+||+.+ .++.|.+|++.
T Consensus 302 ~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 302 DGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEEecCCCeEEEEEEe
Confidence 99999984 46789999763
No 250
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.94 E-value=5.1e-05 Score=78.52 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=54.6
Q ss_pred EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEE
Q 047036 360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVG 438 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASG 438 (634)
=+.+-|| +..+||++.|++||++.-|+.+. +..|..|+.. +.|+||+|+ +.+|+|
T Consensus 256 gvrIRpD--------~KIlATAGWD~RiRVyswrtl~p-LAVLkyHsag---------------vn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 256 GVRIRPD--------GKILATAGWDHRIRVYSWRTLNP-LAVLKYHSAG---------------VNAVAFSPDCELMAAA 311 (323)
T ss_pred ceEEccC--------CcEEeecccCCcEEEEEeccCCc-hhhhhhhhcc---------------eeEEEeCCCCchhhhc
Confidence 3488899 45899999999999999998653 4566655543 579999999 689999
Q ss_pred ECCCcEEEEec
Q 047036 439 SLDGKIRLYSK 449 (634)
Q Consensus 439 S~DGtIRLWD~ 449 (634)
|.|+.|-||++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999985
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.00077 Score=74.96 Aligned_cols=129 Identities=12% Similarity=-0.019 Sum_probs=80.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---CeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---NRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|+++|... ...+.+..+...+ ....|+|| |+.|+..+.+ ..|++||+.++.. +.+...
T Consensus 198 ~~l~i~d~dG-~~~~~l~~~~~~~--~~p~wSPD--------G~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~---- 260 (448)
T PRK04792 198 YQLMIADYDG-YNEQMLLRSPEPL--MSPAWSPD--------GRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSF---- 260 (448)
T ss_pred eEEEEEeCCC-CCceEeecCCCcc--cCceECCC--------CCEEEEEEecCCCcEEEEEECCCCCe--EEecCC----
Confidence 4788999764 4345555555443 34599999 5666665543 2699999987542 222100
Q ss_pred cccccccccccCcceEEEEECCCC-eEEE-EECCCc--EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLDGK--IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~DGt--IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
.+ ...+.+++||| +||. .+.+|. |.+||+.+++ ...+..+...+...+|||||++|+. +. +
T Consensus 261 ----~g-------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 261 ----PG-------INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred ----CC-------CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCC
Confidence 00 01245789999 5764 566775 7777887652 3455556666788999999999987 32 3
Q ss_pred Cc--EEEEEc
Q 047036 484 TY--LILICT 491 (634)
Q Consensus 484 ~t--IrLWD~ 491 (634)
+. |.++|+
T Consensus 328 g~~~Iy~~dl 337 (448)
T PRK04792 328 GKPQIYRVNL 337 (448)
T ss_pred CCceEEEEEC
Confidence 33 444454
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.91 E-value=0.00029 Score=75.26 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=74.6
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce--EEecccCCCCccccccccccccCcceEEEEECCCC--eEEEEECCCcEEEEeccc
Q 047036 376 ESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t 451 (634)
..++...+|=.|-+|.+....+. |-.+.-|+= .+ ....+++.-|+|.. .++-.|..|+|||-|++.
T Consensus 176 ~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nm--------Ee--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 176 KETFLSADDLRINLWNLEIIDQSFNIVDIKPANM--------EE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred cceEeeccceeeeeccccccCCceeEEEccccCH--------HH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 46778889999999999864321 111211110 00 11235666777754 678888999999999653
Q ss_pred ccc---cccccc------------CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036 452 MRQ---AKTAFP------------GLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 452 ~r~---akt~L~------------GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
.-. ...++. +--..|..|-||++|+||+|-.=.+|+|||+.+ ..+.+.++.-|-
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nm---e~~pv~t~~vh~ 314 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNM---EAKPVETYPVHE 314 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccc---cCCcceEEeehH
Confidence 100 011121 222467789999999999985557999999863 455555555443
No 253
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.86 E-value=0.00042 Score=73.40 Aligned_cols=194 Identities=11% Similarity=0.118 Sum_probs=126.2
Q ss_pred Eeee-CCCeEEEec---CeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCc
Q 047036 260 TLGA-LDNSFLVSD---LGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPG 334 (634)
Q Consensus 260 avG~-~D~sfvv~G---~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~T 334 (634)
.-++ .||+-++-+ .-+.||+....++- + ....|+.| ..++|+.+.| .++.|++++-| +.
T Consensus 15 chAwn~drt~iAv~~~~~evhiy~~~~~~~w-~-~~htls~Hd~~vtgvdWap--------~snrIvtcs~d------rn 78 (361)
T KOG1523|consen 15 CHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-E-PAHTLSEHDKIVTGVDWAP--------KSNRIVTCSHD------RN 78 (361)
T ss_pred eeeecCCCceEEeccCCceEEEEEecCCCCc-e-eceehhhhCcceeEEeecC--------CCCceeEccCC------CC
Confidence 3445 577766643 47888886554421 1 12234444 2234555554 45778999876 46
Q ss_pred EEEEeC-CCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce-EEecccCCCCcc
Q 047036 335 VQQLDI-ETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVL 410 (634)
Q Consensus 335 IrlWDl-eTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~ 410 (634)
-|+|-. ..|+-..+ +.-|...+ ..|.++|. .+.+|+||.-+.|.+|=....+.- |.... ..|
T Consensus 79 ayVw~~~~~~~WkptlvLlRiNrAA--t~V~WsP~--------enkFAVgSgar~isVcy~E~ENdWWVsKhi--kkP-- 144 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRINRAA--TCVKWSPK--------ENKFAVGSGARLISVCYYEQENDWWVSKHI--KKP-- 144 (361)
T ss_pred ccccccCCCCeeccceeEEEeccce--eeEeecCc--------CceEEeccCccEEEEEEEecccceehhhhh--CCc--
Confidence 899998 54543332 34455544 45699997 689999999999999988754320 00000 001
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc--c--c-------------cccccccCCCCCeEEEEEC
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS--M--R-------------QAKTAFPGLGSPITHVDVT 472 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t--~--r-------------~akt~L~GH~d~ItsVdfS 472 (634)
....+.|+...|++ .||.||-|+..|+|..-- . + +....+..-++.|.+|.||
T Consensus 145 ---------irStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 145 ---------IRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred ---------cccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 12236788889998 899999999999998521 0 0 1112232457899999999
Q ss_pred CCCCEEEE-EcCCcEEEEEcc
Q 047036 473 YDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 473 pDGk~LlS-S~D~tIrLWD~~ 492 (634)
|+|..|+= +.|.++-+-|..
T Consensus 216 ~sG~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred CCCCEeeEecCCCceEEeecC
Confidence 99999997 999999999964
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0011 Score=73.47 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=75.2
Q ss_pred cEEEEeCCC---CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEE--EcCCCCceEEecccCCC
Q 047036 334 GVQQLDIET---GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQW--DMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 334 TIrlWDleT---GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklW--D~R~~~~~Vq~l~gh~s 407 (634)
.+.+||+.+ |+..+-..++.... .-.+|+|| |..|+..+ .++...+| ++...+...+.+..+.
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~--~~p~wSPD--------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~- 326 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQ--GNPSFSPD--------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY- 326 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCc--CCeEECCC--------CCEEEEEECCCCCceEEEEECcccccceEEeccCC-
Confidence 344578876 34433333332221 23489999 55555554 46655555 4432221122232110
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
....+.+++||| +||..+.+ ..|.+||+.+++ . +.|......+.+..|||||++|+- +.
T Consensus 327 --------------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 327 --------------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred --------------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCCCccceEECCCCCEEEEEEC
Confidence 122456789999 67766543 479999998763 3 334433345788999999999985 33
Q ss_pred ---CCcEEEEEcc
Q 047036 483 ---DTYLILICTL 492 (634)
Q Consensus 483 ---D~tIrLWD~~ 492 (634)
...|.+||+.
T Consensus 391 ~~g~~~L~~vdl~ 403 (428)
T PRK01029 391 NSNESELYLISLI 403 (428)
T ss_pred CCCCceEEEEECC
Confidence 3457777753
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00027 Score=79.30 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=102.5
Q ss_pred EEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCCCCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEE
Q 047036 258 SLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQ 337 (634)
Q Consensus 258 ~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrl 337 (634)
.|+.|-+.++|++ |....++|.. +++ .++...|+..++..++...|-+++.| ..+-+
T Consensus 72 ~lvlgt~~g~v~~-------ys~~~g~it~-----~~s-----t~~h~~~v~~~~~~~~~~ciyS~~ad------~~v~~ 128 (541)
T KOG4547|consen 72 MLVLGTPQGSVLL-------YSVAGGEITA-----KLS-----TDKHYGNVNEILDAQRLGCIYSVGAD------LKVVY 128 (541)
T ss_pred EEEeecCCccEEE-------EEecCCeEEE-----EEe-----cCCCCCcceeeecccccCceEecCCc------eeEEE
Confidence 6677777777665 4444433322 222 35556777788877777778888776 68999
Q ss_pred EeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036 338 LDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ 417 (634)
Q Consensus 338 WDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~ 417 (634)
|+...+++++.|++....| ...+++|| +.++++|| +.|++||+.+++ +|+++.||.++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~--~sl~is~D--------~~~l~~as--~~ik~~~~~~ke-vv~~ftgh~s~v-------- 187 (541)
T KOG4547|consen 129 ILEKEKVIIRIWKEQKPLV--SSLCISPD--------GKILLTAS--RQIKVLDIETKE-VVITFTGHGSPV-------- 187 (541)
T ss_pred EecccceeeeeeccCCCcc--ceEEEcCC--------CCEEEecc--ceEEEEEccCce-EEEEecCCCcce--------
Confidence 9999999999999998876 34599999 45777776 589999999864 689999998875
Q ss_pred cccCcceEEEEECCC-----C-e-EEEEECCCcEEEEeccc
Q 047036 418 FSRGTNFQCFASTGD-----G-S-IVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 418 y~~~~~fssva~s~d-----G-~-IASGS~DGtIRLWD~~t 451 (634)
+|++|... | + |.++.....|-+|=+..
T Consensus 188 -------~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 -------RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -------EEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 34444332 5 4 66677777788886543
No 256
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=4.5e-05 Score=81.28 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=94.0
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCC----CceEEecccCCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDR----SGIVQNMVKGDSP 408 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~----~~~Vq~l~gh~s~ 408 (634)
..|-|-|++|| .-+.|... ..| |+ -+|+++ +.+++.|+..+.|+..|+|.+ +.+++.| .|.+.
T Consensus 234 qqv~L~nvetg-~~qsf~sk-sDV------fA--lQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ss 300 (425)
T KOG2695|consen 234 QQVLLTNVETG-HQQSFQSK-SDV------FA--LQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSS 300 (425)
T ss_pred ceeEEEEeecc-cccccccc-hhH------HH--HHhccc--CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcc
Confidence 46889999986 34556533 333 22 245555 469999999999999999986 2233443 24333
Q ss_pred ccccccccccccCcceEEEEECC--CCeEEEEECCCcEEEEeccccccc---cccccCCCCCeEE--EEECCCCCEEEE-
Q 047036 409 VLHWTQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSKTSMRQA---KTAFPGLGSPITH--VDVTYDGKWILG- 480 (634)
Q Consensus 409 V~~~~~g~~y~~~~~fssva~s~--dG~IASGS~DGtIRLWD~~t~r~a---kt~L~GH~d~Its--VdfSpDGk~LlS- 480 (634)
++|+-+-. +.+|.+.+.+|+|+|||.+-.+ + .++..||-..-.- +-+.+....|+|
T Consensus 301 ---------------vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 301 ---------------VTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred ---------------hhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEc
Confidence 33433322 3478899999999999987543 4 5678888754333 445577778888
Q ss_pred EcCCcEEEEEcccccCCCCeeeee
Q 047036 481 TTDTYLILICTLFSDKDGKTKTGF 504 (634)
Q Consensus 481 S~D~tIrLWD~~~~~~~G~~~~gF 504 (634)
+.|.|.|||.+. .|.++.+.
T Consensus 365 GdDcytRiWsl~----~ghLl~ti 384 (425)
T KOG2695|consen 365 GDDCYTRIWSLD----SGHLLCTI 384 (425)
T ss_pred cCeeEEEEEecc----cCceeecc
Confidence 999999999975 57665543
No 257
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.79 E-value=0.00028 Score=76.34 Aligned_cols=107 Identities=16% Similarity=0.057 Sum_probs=77.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccc
Q 047036 377 STFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQA 455 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~a 455 (634)
..-..++...+.+|.+..+.+ ..+.||-+. ++.|+++||+ +|.++-.|..||+=......-.
T Consensus 124 v~dkagD~~~~di~s~~~~~~--~~~lGhvSm---------------l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRC--EPILGHVSM---------------LLDVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred EEeecCCceeeeeecccccCc--chhhhhhhh---------------hheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 333456667788887664322 344566554 3567899998 7999999999998554322112
Q ss_pred cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeec
Q 047036 456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~ 505 (634)
..-+-||...|..+++.++ +.|+| |-|++|++||.+ +|+++.+|.
T Consensus 187 esfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~----sgk~L~t~d 232 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT----SGKLLDTCD 232 (390)
T ss_pred hhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecc----cCCcccccc
Confidence 2334499999999999987 44788 999999999987 788886665
No 258
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00078 Score=75.78 Aligned_cols=155 Identities=11% Similarity=0.203 Sum_probs=94.3
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecC-----------------------
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITND----------------------- 366 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd----------------------- 366 (634)
.|-.+.|+..|++.+..+ -.|+++|+.. +--.|.-|.+.= +|.|-|=
T Consensus 56 ~ik~s~DGqY~lAtG~YK-----P~ikvydlan--LSLKFERhlDae---~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYK-----PQIKVYDLAN--LSLKFERHLDAE---VVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred eeEecCCCcEEEEecccC-----CceEEEEccc--ceeeeeeccccc---ceeEEEeccchhhheEeecCceeeehhhcC
Confidence 344567778888888775 5799999873 444566665532 2233221
Q ss_pred -------------CCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-C
Q 047036 367 -------------TKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D 432 (634)
Q Consensus 367 -------------~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d 432 (634)
-++.- ++--|++|+.-..|++.++..++ -++.+.- ....+.++..++ .
T Consensus 126 ~hy~~RIP~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGr-fL~P~~~---------------~~~~lN~v~in~~h 187 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGR-FLNPFET---------------DSGELNVVSINEEH 187 (703)
T ss_pred eeeeeecCcCCccccccC--CCccEEEeecCcceEEEEccccc-ccccccc---------------ccccceeeeecCcc
Confidence 00000 00124444445555555655432 1222210 112345556655 5
Q ss_pred CeEEEEECCCcEEEEecccccccc-----ccccCCCC-----CeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 433 GSIVVGSLDGKIRLYSKTSMRQAK-----TAFPGLGS-----PITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 433 G~IASGS~DGtIRLWD~~t~r~ak-----t~L~GH~d-----~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
|.||+|+.+|.|-.||.+....+. ..++.|.. .|++|.|+-||-.++. |..+.+.|+|++
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 689999999999999987632111 12223333 3999999999999999 999999999987
No 259
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.78 E-value=0.00011 Score=81.89 Aligned_cols=173 Identities=11% Similarity=0.097 Sum_probs=109.2
Q ss_pred cEEEeeeCCCeEEEecCeeeEEEccCCceecceeEEEecCC-CCCcccccCcceeeEEeCCcceEEecCCCCCCCCCCcE
Q 047036 257 QSLTLGALDNSFLVSDLGLQVYRNYNRGIHNKGVSVRFDGG-SSKIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGV 335 (634)
Q Consensus 257 ~~LavG~~D~sfvv~G~~igV~k~~~~gl~~~~~~~~~~~~-~~~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TI 335 (634)
.++++.++|+.|++=...-+|=+. ++.| ....+-.++|+++ -|++++.| +.|
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~s-------------v~AH~~A~~~gRW~~dGt--------gLlt~GED------G~i 128 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERS-------------ISAHAAAISSGRWSPDGA--------GLLTAGED------GVI 128 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhh-------------hhhhhhhhhhcccCCCCc--------eeeeecCC------ceE
Confidence 389999999999875443333221 1111 0012333666664 35666654 799
Q ss_pred EEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccc
Q 047036 336 QQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 336 rlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g 415 (634)
++|. .+|-+-.++--....| .++++.|++ ...+++.+....|+=--+.. ++ -....|.+-
T Consensus 129 KiWS-rsGMLRStl~Q~~~~v--~c~~W~p~S-------~~vl~c~g~h~~IKpL~~n~--k~-i~WkAHDGi------- 188 (737)
T KOG1524|consen 129 KIWS-RSGMLRSTVVQNEESI--RCARWAPNS-------NSIVFCQGGHISIKPLAANS--KI-IRWRAHDGL------- 188 (737)
T ss_pred EEEe-ccchHHHHHhhcCcee--EEEEECCCC-------CceEEecCCeEEEeeccccc--ce-eEEeccCcE-------
Confidence 9998 4576655555445544 567999984 46778877766666544432 22 223344432
Q ss_pred cccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEE
Q 047036 416 HQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLI 487 (634)
Q Consensus 416 ~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIr 487 (634)
+.|+..++.. .||+|+.|-.-++||..+ + ...+-..|..||++|+|.||--|++-| =+++|
T Consensus 189 --------iL~~~W~~~s~lI~sgGED~kfKvWD~~G-~-~Lf~S~~~ey~ITSva~npd~~~~v~S-~nt~R 250 (737)
T KOG1524|consen 189 --------VLSLSWSTQSNIIASGGEDFRFKIWDAQG-A-NLFTSAAEEYAITSVAFNPEKDYLLWS-YNTAR 250 (737)
T ss_pred --------EEEeecCccccceeecCCceeEEeecccC-c-ccccCChhccceeeeeeccccceeeee-eeeee
Confidence 3456666655 899999999999999876 3 445555799999999999995554433 33444
No 260
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=5.9e-05 Score=80.40 Aligned_cols=146 Identities=12% Similarity=0.137 Sum_probs=97.7
Q ss_pred EEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEecccccc---
Q 047036 379 FLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQ--- 454 (634)
Q Consensus 379 aSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~--- 454 (634)
|+.+-+..|-+-|+.++-. |.+. ++.++.+.-|.. +..|..|...|.|-.+|++...+
T Consensus 228 fs~G~sqqv~L~nvetg~~--qsf~----------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ--QSFQ----------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeecccc--cccc----------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 5566677777888877532 3432 222333444444 34788899999999999876311
Q ss_pred -ccccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCC
Q 047036 455 -AKTAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTD 531 (634)
Q Consensus 455 -akt~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~ 531 (634)
+.+.| -|...|++|-.=. ++++|++ +++++|+|||.+... -++.++.|+||.....+
T Consensus 290 ~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~------------------ 349 (425)
T KOG2695|consen 290 WCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAY------------------ 349 (425)
T ss_pred cceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccc------------------
Confidence 22233 3889999988776 8899988 999999999998642 46678999999964311
Q ss_pred cccccccccccccCCCCceEEEE-EcCCeEEEEeChhhhccccc
Q 047036 532 NKIHGGHFSWVTENGKQERHLVA-TVGKFSVIWDFQQVKNSAHE 574 (634)
Q Consensus 532 i~Ft~a~Fs~~t~~g~~E~~Ivt-Stg~~viiWdl~~v~~~~~~ 574 (634)
.|+..+ ..|..|++ +-|-|..||.++ .|++-
T Consensus 350 ---l~~~v~------~eeg~I~s~GdDcytRiWsl~---~ghLl 381 (425)
T KOG2695|consen 350 ---LPAHVK------EEEGSIFSVGDDCYTRIWSLD---SGHLL 381 (425)
T ss_pred ---cccccc------cccceEEEccCeeEEEEEecc---cCcee
Confidence 222222 12457766 557788899987 45554
No 261
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.76 E-value=0.0037 Score=69.25 Aligned_cols=141 Identities=17% Similarity=0.152 Sum_probs=104.3
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-eEEEEEcC
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-RLCQWDMR 393 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-tIklWD~R 393 (634)
.+++||..-+. +.+.+++.--|-.|+- +|..+|. -..+.-+ ++-++.|..|+ .|-+.|.+
T Consensus 330 ~~Gd~ia~VSR-------GkaFi~~~~~~~~iqv--~~~~~Vr--Y~r~~~~--------~e~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 330 VNGDYIALVSR-------GKAFIMRPWDGYSIQV--GKKGGVR--YRRIQVD--------PEGDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred CCCcEEEEEec-------CcEEEECCCCCeeEEc--CCCCceE--EEEEccC--------CcceEEeccCCceEEEEecC
Confidence 45667776665 5799999887877764 6777774 3366665 46799999998 99999998
Q ss_pred CCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEEC
Q 047036 394 DRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVT 472 (634)
Q Consensus 394 ~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfS 472 (634)
++. ++.+... --++.+++.+++| ++|+|.....|-+.|+.+++ .+..=..--+-|+.+++|
T Consensus 391 ~~e--~kr~e~~---------------lg~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~ 452 (668)
T COG4946 391 GGE--VKRIEKD---------------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWH 452 (668)
T ss_pred Cce--EEEeeCC---------------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEc
Confidence 764 2333210 1246788999999 69999999999999999874 444334555779999999
Q ss_pred CCCCEEEEEc-----CCcEEEEEcc
Q 047036 473 YDGKWILGTT-----DTYLILICTL 492 (634)
Q Consensus 473 pDGk~LlSS~-----D~tIrLWD~~ 492 (634)
|+++|||=+. -..|+|+|+.
T Consensus 453 ~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 453 PNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred CCceeEEEecCcceeeeeEEEEecC
Confidence 9999999532 3568899964
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.75 E-value=0.012 Score=64.00 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=53.6
Q ss_pred EEEEECCCC-eEEEEEC----------CCcEEEEeccccccccccccCCCCCeEEEEECCCCC-EEEEE--cCCcEEEEE
Q 047036 425 QCFASTGDG-SIVVGSL----------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGK-WILGT--TDTYLILIC 490 (634)
Q Consensus 425 ssva~s~dG-~IASGS~----------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk-~LlSS--~D~tIrLWD 490 (634)
..++++++| +|.++.. .+.|-++|..+.+ ....++ .+..+.+|+|||||+ +|.++ .+++|.++|
T Consensus 251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 448899887 6666431 2579999998864 445554 356899999999999 77763 478999999
Q ss_pred cccccCCCCeeeee
Q 047036 491 TLFSDKDGKTKTGF 504 (634)
Q Consensus 491 ~~~~~~~G~~~~gF 504 (634)
+. +++.+...
T Consensus 329 ~~----t~k~i~~i 338 (352)
T TIGR02658 329 AE----TGKELSSV 338 (352)
T ss_pred Cc----CCeEEeee
Confidence 85 56655443
No 263
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.68 E-value=0.00076 Score=77.15 Aligned_cols=123 Identities=9% Similarity=0.009 Sum_probs=85.3
Q ss_pred EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcce
Q 047036 345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNF 424 (634)
Q Consensus 345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~f 424 (634)
.+..+..|.+.| .++.++|- +..+++.+.|.+|+||.-.....++..+. .... .+
T Consensus 390 ~~~~~~~h~g~v--~~v~~nPF--------~~k~fls~gDW~vriWs~~~~~~Pl~~~~----------~~~~-----~v 444 (555)
T KOG1587|consen 390 GHSTFITHIGPV--YAVSRNPF--------YPKNFLSVGDWTVRIWSEDVIASPLLSLD----------SSPD-----YV 444 (555)
T ss_pred ccccccccCcce--EeeecCCC--------ccceeeeeccceeEeccccCCCCcchhhh----------hccc-----ee
Confidence 345677787765 46688885 45555555599999998753222221111 1111 26
Q ss_pred EEEEECCCC--eEEEEECCCcEEEEeccccc-cccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 425 QCFASTGDG--SIVVGSLDGKIRLYSKTSMR-QAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 425 ssva~s~dG--~IASGS~DGtIRLWD~~t~r-~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
++++.||-. .+|++..||.|-|||+..-. .+..+.+-+....+.+.++++|+.|+. ...|++.++++.
T Consensus 445 ~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 445 TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 888999876 68999999999999986421 133344444666788899999999999 778999999974
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.56 E-value=0.00084 Score=78.72 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=101.4
Q ss_pred eeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC------
Q 047036 310 ALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD------ 383 (634)
Q Consensus 310 ~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~------ 383 (634)
+.++...++.++.+... ++|.+-|+.+-+.+.+|..|++.+ .+|.-. |++|++++.
T Consensus 180 v~imR~Nnr~lf~G~t~------G~V~LrD~~s~~~iht~~aHs~si----SDfDv~--------GNlLitCG~S~R~~~ 241 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTR------GTVFLRDPNSFETIHTFDAHSGSI----SDFDVQ--------GNLLITCGYSMRRYN 241 (1118)
T ss_pred eEEEEecCcEEEeeccc------ceEEeecCCcCceeeeeeccccce----eeeecc--------CCeEEEeeccccccc
Confidence 55666666666666543 799999999999999999999854 477765 788888874
Q ss_pred ---CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC--CeEEEEECCCcEEEEeccc---cccc
Q 047036 384 ---DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSKTS---MRQA 455 (634)
Q Consensus 384 ---D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d--G~IASGS~DGtIRLWD~~t---~r~a 455 (634)
|.=|++||+|+-+.+ ..+.=+- +.+ |- -|.|. .++|++|.-|...+-|..+ ....
T Consensus 242 l~~D~FvkVYDLRmmral-~PI~~~~--------~P~------fl--rf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 242 LAMDPFVKVYDLRMMRAL-SPIQFPY--------GPQ------FL--RFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred ccccchhhhhhhhhhhcc-CCccccc--------Cch------hh--hhcccccceEEEEecccceeeccccccCCCccc
Confidence 555799999975432 1111111 111 11 22333 3789999999999999433 2112
Q ss_pred cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
+..+...+..|.+++||++|.-||- -.++.|.+|-
T Consensus 305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2333445667999999999999998 6799999996
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.55 E-value=0.00073 Score=73.14 Aligned_cols=121 Identities=16% Similarity=0.205 Sum_probs=80.0
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCe
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNR 386 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~t 386 (634)
|........+...++.....+ ...+.+|.+..|++ +..-||-..| .-|+|+|| ++.|+++-.|..
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD----~~~~di~s~~~~~~-~~~lGhvSml--~dVavS~D--------~~~IitaDRDEk 174 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGD----VYSFDILSADSGRC-EPILGHVSML--LDVAVSPD--------DQFIITADRDEK 174 (390)
T ss_pred cceeeeeeccceEEEEeecCC----ceeeeeecccccCc-chhhhhhhhh--heeeecCC--------CCEEEEecCCce
Confidence 333444455666666655533 25577777776554 4456898865 45699999 679999999999
Q ss_pred EEEEEcCCCCceEEecccCCCCcccccccc-ccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc
Q 047036 387 LCQWDMRDRSGIVQNMVKGDSPVLHWTQGH-QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF 459 (634)
Q Consensus 387 IklWD~R~~~~~Vq~l~gh~s~V~~~~~g~-~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L 459 (634)
||+--.-.- -.+.. |..|| .| ++.++..++-.|+|||.|++||+||..+++ +..++
T Consensus 175 IRvs~ypa~-f~Ies----------fclGH~eF-----VS~isl~~~~~LlS~sGD~tlr~Wd~~sgk-~L~t~ 231 (390)
T KOG3914|consen 175 IRVSRYPAT-FVIES----------FCLGHKEF-----VSTISLTDNYLLLSGSGDKTLRLWDITSGK-LLDTC 231 (390)
T ss_pred EEEEecCcc-cchhh----------hccccHhh-----eeeeeeccCceeeecCCCCcEEEEecccCC-ccccc
Confidence 998654321 12222 22333 34 356677777789999999999999999886 33443
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00047 Score=77.00 Aligned_cols=145 Identities=15% Similarity=0.195 Sum_probs=92.9
Q ss_pred CcEEEEeCCC-------CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036 333 PGVQQLDIET-------GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG 405 (634)
Q Consensus 333 ~TIrlWDleT-------GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh 405 (634)
+||++|.+.. .-|--++..|+..|+ -..|-.+ .+. .+|-|+.|.+||+-.++.+.|.+...
T Consensus 757 KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~--~igfL~~--------lr~--i~ScD~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 757 KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIH--DIGFLAD--------LRS--IASCDGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred ceEEEEEeccccCccccceeeeEhhhccCccc--ceeeeec--------cce--eeeccCcceeecccccchhHhhhcCc
Confidence 7999999753 236667889998764 3355544 233 45569999999997655332222110
Q ss_pred CCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---cc-cccccCCCCCeEEEEECCCCCEEEE
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---QA-KTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---~a-kt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
-| ....++-|+-.-... .||-++...||||+|.+... .. ...-+|-...+++|++-|.|.|+++
T Consensus 825 ---------k~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa 893 (1034)
T KOG4190|consen 825 ---------KE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA 893 (1034)
T ss_pred ---------cc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence 00 012234443221222 35666899999999987532 01 1223455667999999999999999
Q ss_pred -EcCCcEEEEEcccccCCCCeeeee
Q 047036 481 -TTDTYLILICTLFSDKDGKTKTGF 504 (634)
Q Consensus 481 -S~D~tIrLWD~~~~~~~G~~~~gF 504 (634)
-..++|.+.|++ +|+.++..
T Consensus 894 ~LSnGci~~LDaR----~G~vINsw 914 (1034)
T KOG4190|consen 894 ALSNGCIAILDAR----NGKVINSW 914 (1034)
T ss_pred HhcCCcEEEEecC----CCceeccC
Confidence 678999999987 67655533
No 267
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.32 E-value=0.1 Score=52.65 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=86.1
Q ss_pred eeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe-cCCCCCCCCCCCEEEEEeCCCeE
Q 047036 309 KALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT-NDTKSSQLDPSESTFLGLDDNRL 387 (634)
Q Consensus 309 ~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs-Pd~K~~q~~~g~~laSGS~D~tI 387 (634)
+..+...++.+++++-.. +.|+.||..+++.. .+.... +..+ .+. ++ ..++.+... .+
T Consensus 4 gp~~d~~~g~l~~~D~~~------~~i~~~~~~~~~~~-~~~~~~---~~G~-~~~~~~---------g~l~v~~~~-~~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG------GRIYRVDPDTGEVE-VIDLPG---PNGM-AFDRPD---------GRLYVADSG-GI 62 (246)
T ss_dssp EEEEETTTTEEEEEETTT------TEEEEEETTTTEEE-EEESSS---EEEE-EEECTT---------SEEEEEETT-CE
T ss_pred ceEEECCCCEEEEEEcCC------CEEEEEECCCCeEE-EEecCC---CceE-EEEccC---------CEEEEEEcC-ce
Confidence 344443466666666543 68999999987653 344333 2233 666 44 355665554 44
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECC---------CcEEEEecccccccccc
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD---------GKIRLYSKTSMRQAKTA 458 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D---------GtIRLWD~~t~r~akt~ 458 (634)
.++|+.++. ++.+..... +. ........+++.++|.|..+... |.|..++.. + +....
T Consensus 63 ~~~d~~~g~--~~~~~~~~~-------~~--~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~ 129 (246)
T PF08450_consen 63 AVVDPDTGK--VTVLADLPD-------GG--VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVV 129 (246)
T ss_dssp EEEETTTTE--EEEEEEEET-------TC--SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEE
T ss_pred EEEecCCCc--EEEEeeccC-------CC--cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEE
Confidence 555988753 334321100 00 02234567899999976655432 456667765 2 23333
Q ss_pred ccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEcc
Q 047036 459 FPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICTL 492 (634)
Q Consensus 459 L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~~ 492 (634)
+.+ -...++|+|||||+.|. + +..+.|..++..
T Consensus 130 ~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 130 ADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred ecC-cccccceEECCcchheeecccccceeEEEecc
Confidence 333 34468999999999875 5 778888888864
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.30 E-value=0.053 Score=60.19 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC--CeEEEEEcCCCCceEEecccCCCCcc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD--NRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D--~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
..|+++|+.+|+..+-.. ..+.+ ...+|+||++ .++++.+.+ ..|.++|+.++. .+.|..+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~-~~g~~--~~~~~SPDG~-------~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~--- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS-SQGML--VVSDVSKDGS-------KLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPG--- 277 (419)
T ss_pred CEEEEEECCCCcEEEEec-CCCcE--EeeEECCCCC-------EEEEEEccCCCcEEEEEECCCCc--EEEcccCCC---
Confidence 479999999997644333 22221 3458999942 344444433 568888987653 233421110
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEEC-CC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
. .....++||| +||-.|. .| .|.+.|+.+++ ... +.-.+.. ..++||||++|+- +.
T Consensus 278 -----------~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~r-lt~~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 278 -----------I-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQ-VVFHGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred -----------c-cCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEe-CccCCCc--CceECCCCCEEEEEEc
Confidence 0 1123579999 6766553 23 67788887763 322 2211222 2489999999987 44
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.29 E-value=0.094 Score=56.22 Aligned_cols=163 Identities=13% Similarity=0.254 Sum_probs=92.1
Q ss_pred CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCC-CcEEEE---Ee--cc------CCCcceeEEEEecCCCCCCCC
Q 047036 306 TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIET-GKIVTE---WK--FE------KDGTDITMRDITNDTKSSQLD 373 (634)
Q Consensus 306 sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleT-GK~V~~---lk--gH------~~~V~I~vvsfsPd~K~~q~~ 373 (634)
.|.... .+.++++|+.+... +++|.++++.. |++... +. |+ ...-....+.|+|+++
T Consensus 88 ~p~~i~-~~~~g~~l~vany~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~----- 156 (345)
T PF10282_consen 88 SPCHIA-VDPDGRFLYVANYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR----- 156 (345)
T ss_dssp CEEEEE-ECTTSSEEEEEETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-----
T ss_pred CcEEEE-EecCCCEEEEEEcc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-----
Confidence 455433 35666766666543 37999999976 665443 21 11 0011123458999943
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEecc-
Q 047036 374 PSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKT- 450 (634)
Q Consensus 374 ~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~- 450 (634)
..+++......|+++++......+..... + ......--..++|+|+| ++ ++.-.+++|.+|+..
T Consensus 157 --~v~v~dlG~D~v~~~~~~~~~~~l~~~~~----~-------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 157 --FVYVPDLGADRVYVYDIDDDTGKLTPVDS----I-------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp --EEEEEETTTTEEEEEEE-TTS-TEEEEEE----E-------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --EEEEEecCCCEEEEEEEeCCCceEEEeec----c-------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 24445556678999998765421111100 0 00111223567899998 44 566788999999987
Q ss_pred -ccc----cccccccC-C-C-CCeEEEEECCCCCEEEE--EcCCcEEEEEcc
Q 047036 451 -SMR----QAKTAFPG-L-G-SPITHVDVTYDGKWILG--TTDTYLILICTL 492 (634)
Q Consensus 451 -t~r----~akt~L~G-H-~-d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~ 492 (634)
.++ +...+++. . + ..-..|.+||||++|.. ...++|-++++.
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 221 11123321 1 1 25789999999999987 347899999974
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.28 E-value=0.0026 Score=68.12 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=83.0
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.|+.+|+++|+++-+...... . ....+ +..++.++.|+.|..+|+.++.. +-.....
T Consensus 251 g~l~a~d~~tG~~~W~~~~~~~----~--~p~~~--------~~~vyv~~~~G~l~~~d~~tG~~-~W~~~~~------- 308 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRDASSY----Q--GPAVD--------DNRLYVTDADGVVVALDRRSGSE-LWKNDEL------- 308 (377)
T ss_pred CEEEEEECCCCcEEEeeccCCc----c--CceEe--------CCEEEEECCCCeEEEEECCCCcE-EEccccc-------
Confidence 6899999999998866652211 0 11112 46899999999999999987642 2221000
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILI 489 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLW 489 (634)
+ ...+++.+. .+++|++++.+|.|+++|..+++ .+..++-++.++.+--+..+++.++.+.|++|..+
T Consensus 309 --~-----~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~-~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 309 --K-----YRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGS-FVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred --c-----CCccccCEE-ECCEEEEEeCCCEEEEEECCCCC-EEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 0 001111122 25689999999999999998874 66667666666666555667776667999988654
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.24 E-value=0.0013 Score=69.71 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=104.2
Q ss_pred eEEEec--CeeeEEEccCCceecceeEEEecC--CCCCcccccCcceeeEEeC-CcceEEecCCCCCCCCCCcEEEEeCC
Q 047036 267 SFLVSD--LGLQVYRNYNRGIHNKGVSVRFDG--GSSKIGSNSTPKKALLMRG-ETNMMLMSPLKDGKPQAPGVQQLDIE 341 (634)
Q Consensus 267 sfvv~G--~~igV~k~~~~gl~~~~~~~~~~~--~~~~~g~~fsP~~~mL~~~-D~~mllsss~d~~~~~~~TIrlWDle 341 (634)
-|++.+ .+|.+||....++... +..+++. |.++.|...+|...+|-.- +-.+|++.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~v-a~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa------------------ 161 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVV-AENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA------------------ 161 (460)
T ss_pred eEEEecCCceeeeeeeecccchhh-hccccccccccccCCCcCCHHHhhcccccccceEEEe------------------
Confidence 467654 6899999877654432 1223332 2344555555554333221 11122222
Q ss_pred CCcEEEEE-eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce--EEecccCCCCcccccccccc
Q 047036 342 TGKIVTEW-KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI--VQNMVKGDSPVLHWTQGHQF 418 (634)
Q Consensus 342 TGK~V~~l-kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~--Vq~l~gh~s~V~~~~~g~~y 418 (634)
+.-|.+ ..|.--+ ...+|..| ..++..++|=.|-+|.+...... +-.+.-|+ +
T Consensus 162 --~p~rvyaNaH~yhi--NSiS~NsD---------~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~n-----------m 217 (460)
T COG5170 162 --KPCRVYANAHPYHI--NSISFNSD---------KETLLSADDLRINLWNLEIIDGSFNIVDIKPHN-----------M 217 (460)
T ss_pred --ccceeccccceeEe--eeeeecCc---------hheeeeccceeeeeccccccCCceEEEeccCcc-----------H
Confidence 111122 4565432 34466665 46777889999999999754321 11222221 1
Q ss_pred c-cCcceEEEEECCCC--eEEEEECCCcEEEEeccccc---ccccc------------ccCCCCCeEEEEECCCCCEEEE
Q 047036 419 S-RGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSMR---QAKTA------------FPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 419 ~-~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~r---~akt~------------L~GH~d~ItsVdfSpDGk~LlS 480 (634)
. ....+++.-|+|.. .+.-.|..|+|+|-|++... +.+.+ |.+....|..+-||++|+||||
T Consensus 218 eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 218 EELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 1 11224566677754 46667788999999976310 01111 1233467888999999999999
Q ss_pred EcCCcEEEEEccc
Q 047036 481 TTDTYLILICTLF 493 (634)
Q Consensus 481 S~D~tIrLWD~~~ 493 (634)
-.=.+|+|||+.+
T Consensus 298 RdyltvkiwDvnm 310 (460)
T COG5170 298 RDYLTVKIWDVNM 310 (460)
T ss_pred eccceEEEEeccc
Confidence 6667999999874
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.21 E-value=0.0015 Score=81.10 Aligned_cols=119 Identities=15% Similarity=0.273 Sum_probs=84.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE---eCCCeEEEEEcCCCC--ceEEecccCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG---LDDNRLCQWDMRDRS--GIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG---S~D~tIklWD~R~~~--~~Vq~l~gh~s 407 (634)
+.|-+|.+. -|.+..|+.|..... +|--- +..++++ ++++.+++||.-... .+|. ..|.+
T Consensus 2273 g~l~l~q~~-pk~~~s~qchnk~~~----Df~Fi--------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2273 GDLSLWQAS-PKPYTSWQCHNKALS----DFRFI--------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred CceeecccC-CcceeccccCCcccc----ceeee--------ehhhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence 679999987 788999999987542 33221 2345544 467999999976532 2333 23332
Q ss_pred CccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCc
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTY 485 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~t 485 (634)
-.+|+++-|.. .|.|||.+|.|+|||++. |+.+.+++. ++ --.++++ +..++
T Consensus 2338 ---------------gaT~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~-------~~---~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 ---------------GATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA-------LD---TREYFVTGSSEGN 2391 (2439)
T ss_pred ---------------CceEEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh-------hh---hhheeeccCcccc
Confidence 24788998887 689999999999999876 345566654 22 3457787 99999
Q ss_pred EEEEEcc
Q 047036 486 LILICTL 492 (634)
Q Consensus 486 IrLWD~~ 492 (634)
|+||++.
T Consensus 2392 ikIw~~s 2398 (2439)
T KOG1064|consen 2392 IKIWRLS 2398 (2439)
T ss_pred eEEEEcc
Confidence 9999975
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.20 E-value=0.0069 Score=65.03 Aligned_cols=169 Identities=13% Similarity=0.221 Sum_probs=93.8
Q ss_pred CcEEEeeeCCCeEEEec-CeeeEEEccCCceecceeEEEecCCC------CCcccccCcceeeEEeCCcceEEecCCCCC
Q 047036 256 VQSLTLGALDNSFLVSD-LGLQVYRNYNRGIHNKGVSVRFDGGS------SKIGSNSTPKKALLMRGETNMMLMSPLKDG 328 (634)
Q Consensus 256 ~~~LavG~~D~sfvv~G-~~igV~k~~~~gl~~~~~~~~~~~~~------~~~g~~fsP~~~mL~~~D~~mllsss~d~~ 328 (634)
+|++.+-+.--.|+-.+ -+|.+|+..--...| .||.++.+. -+++..|.|...+ +++-+++.
T Consensus 167 iNSIS~NsD~Et~lSADdLRINLWnlei~d~sF--nIVDIKP~nmEeLteVITsaEFhp~~cn-------~f~YSSSK-- 235 (433)
T KOG1354|consen 167 INSISVNSDKETFLSADDLRINLWNLEIIDQSF--NIVDIKPANMEELTEVITSAEFHPHHCN-------VFVYSSSK-- 235 (433)
T ss_pred eeeeeecCccceEeeccceeeeeccccccCCce--eEEEccccCHHHHHHHHhhhccCHhHcc-------EEEEecCC--
Confidence 45666655333455444 599999974333222 355554431 1277889988754 45555553
Q ss_pred CCCCCcEEEEeCCCCcEE----EEEeccCCCcc----------eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 329 KPQAPGVQQLDIETGKIV----TEWKFEKDGTD----------ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 329 ~~~~~TIrlWDleTGK~V----~~lkgH~~~V~----------I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
++|||-|+...-+- ..|.-..+.++ |+-+.|+++ |+++++ -+=.||++||+..
T Consensus 236 ----GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~s--------Gryils-RDyltvk~wD~nm 302 (433)
T KOG1354|consen 236 ----GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHS--------GRYILS-RDYLTVKLWDLNM 302 (433)
T ss_pred ----CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccC--------CcEEEE-eccceeEEEeccc
Confidence 79999998733211 11222222211 223355554 566665 3338999999966
Q ss_pred CCceEEecccCCCCccccccccccccCc---ceEEEEECCCC-eEEEEECCCcEEEEeccc
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGT---NFQCFASTGDG-SIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~---~fssva~s~dG-~IASGS~DGtIRLWD~~t 451 (634)
..+++.++.-|..-- -..-.-|.... .|.| ++++++ ++++||..+-.|+|++..
T Consensus 303 e~~pv~t~~vh~~lr--~kLc~lYEnD~IfdKFec-~~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 303 EAKPVETYPVHEYLR--SKLCSLYENDAIFDKFEC-SWSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cCCcceEEeehHhHH--HHHHHHhhccchhheeEE-EEcCCcceEecccccceEEEecCCC
Confidence 555666665443100 00000122221 3555 456665 899999999999999543
No 274
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.17 E-value=0.0071 Score=59.63 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=88.5
Q ss_pred CcEEEEeCCCCcEEEEEec---cCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKF---EKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkg---H~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
++|+.||+.+|+.+-+..- .... +....++ +..+++++.++.|..||+.+++ .+-.... ..++
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~--------~~~v~~~~~~~~l~~~d~~tG~-~~W~~~~-~~~~ 68 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGP----VATAVPD--------GGRVYVASGDGNLYALDAKTGK-VLWRFDL-PGPI 68 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSE----EETEEEE--------TTEEEEEETTSEEEEEETTTSE-EEEEEEC-SSCG
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCc----cceEEEe--------CCEEEEEcCCCEEEEEECCCCC-EEEEeec-cccc
Confidence 7999999999999988754 2221 1112323 4689999999999999998864 3333221 1110
Q ss_pred cccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccc-cCCCC---CeEEEEECCCCCEEEE-EcCC
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF-PGLGS---PITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L-~GH~d---~ItsVdfSpDGk~LlS-S~D~ 484 (634)
... ....++.|++++.++.|+.+|..+++ .+-.+ ..... ......+..+|..++. +.++
T Consensus 69 ----------~~~-----~~~~~~~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 132 (238)
T PF13360_consen 69 ----------SGA-----PVVDGGRVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG 132 (238)
T ss_dssp ----------GSG-----EEEETTEEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred ----------cce-----eeecccccccccceeeeEecccCCcc-eeeeeccccccccccccccCceEecCEEEEEeccC
Confidence 000 12346688888899999999988775 33332 21111 2233344444777777 6699
Q ss_pred cEEEEEcccccCCCCeeeeecCC
Q 047036 485 YLILICTLFSDKDGKTKTGFSGR 507 (634)
Q Consensus 485 tIrLWD~~~~~~~G~~~~gF~gh 507 (634)
.|..+|+. +|+.+-.+..+
T Consensus 133 ~l~~~d~~----tG~~~w~~~~~ 151 (238)
T PF13360_consen 133 KLVALDPK----TGKLLWKYPVG 151 (238)
T ss_dssp EEEEEETT----TTEEEEEEESS
T ss_pred cEEEEecC----CCcEEEEeecC
Confidence 99999975 68776656543
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.15 E-value=0.021 Score=61.25 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=81.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCCC--cce-eEEEE--ecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDG--TDI-TMRDI--TNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~--V~I-~vvsf--sPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
+.|+.+|+++|+.+.+....... -.+ .+..+ +|- . .+..++.++.++.++.||++++.. +-...
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~-----~-~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~---- 268 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV-----V-DGGQVYAVSYQGRVAALDLRSGRV-LWKRD---- 268 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE-----E-ECCEEEEEEcCCEEEEEECCCCcE-EEeec----
Confidence 68999999999987654321100 000 00011 111 0 035888999999999999987642 22211
Q ss_pred CccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCC-CeEEEEECCCCCEEEE-EcCCc
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGS-PITHVDVTYDGKWILG-TTDTY 485 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d-~ItsVdfSpDGk~LlS-S~D~t 485 (634)
. . ...+.+. .+++|++++.||.|..+|..+++ .+-..+.... .+.+..+ .|..|+. +.+++
T Consensus 269 --------~---~--~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~ 331 (377)
T TIGR03300 269 --------A---S--SYQGPAV-DDNRLYVTDADGVVVALDRRSGS-ELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY 331 (377)
T ss_pred --------c---C--CccCceE-eCCEEEEECCCCeEEEEECCCCc-EEEccccccCCccccCEE--ECCEEEEEeCCCE
Confidence 0 0 0111111 25689999999999999998764 3333322111 1222222 3556666 88999
Q ss_pred EEEEEcccccCCCCeeeeec
Q 047036 486 LILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 486 IrLWD~~~~~~~G~~~~gF~ 505 (634)
|.++|.. +|+.+..+.
T Consensus 332 l~~~d~~----tG~~~~~~~ 347 (377)
T TIGR03300 332 LHWLSRE----DGSFVARLK 347 (377)
T ss_pred EEEEECC----CCCEEEEEE
Confidence 9999975 677654443
No 276
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.13 E-value=0.022 Score=65.90 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=119.2
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe------------------------------
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL------------------------------ 382 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS------------------------------ 382 (634)
+.+...|.++-+++.+....... ..++++|++ .++++.+
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnp---d~v~~spdG--------k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea 283 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNL---DNVDTDYDG--------KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEE 283 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCc---ccceECCCC--------CEEEEeccCcccCcceeeeccccCceEEEEchHHHHH
Confidence 57888899988888887665432 245888884 4454443
Q ss_pred ----------CCCeEEEEEcCC----CCceEEecccCCCCccccccccccccCcceEEEEECCCC-e-EEEEECCCcEEE
Q 047036 383 ----------DDNRLCQWDMRD----RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRL 446 (634)
Q Consensus 383 ----------~D~tIklWD~R~----~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRL 446 (634)
.+++|.++|.++ +..++..+. ....-..++++||| + +++|..+++|-+
T Consensus 284 ~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----------------VGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 284 AVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----------------VPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred hhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----------------CCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 235567777665 222222221 11112456889999 5 566778999999
Q ss_pred Eecccccc----------ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc
Q 047036 447 YSKTSMRQ----------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP 515 (634)
Q Consensus 447 WD~~t~r~----------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p 515 (634)
.|+...+. ++..-+..+..-.+.+|.++|.-..| -.|+.|..|++. +.+..|.|--. .|.-
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~------~a~~~~~g~~~--~~v~ 419 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE------AAIRAYKGEKV--DPIV 419 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH------HHHHHhccccC--Ccce
Confidence 99876431 01111123334478899999986666 779999999964 12223333221 1211
Q ss_pred ee--EeecCCCcccc--------CC----Ccccccccccccc-cCCCCceEEEEEcCCeEEEEeCh
Q 047036 516 RL--LKLTPLDSHLA--------GT----DNKIHGGHFSWVT-ENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 516 r~--L~L~Pe~~~~~--------g~----~i~Ft~a~Fs~~t-~~g~~E~~IvtStg~~viiWdl~ 566 (634)
.+ ++-.|.|.+.. |+ -.+|++++|-++- .--.++++|=-|.+++..|-|.-
T Consensus 420 ~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p 485 (635)
T PRK02888 420 QKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGP 485 (635)
T ss_pred ecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCC
Confidence 11 23346665331 11 2579999998751 11245677777888888888873
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.10 E-value=0.24 Score=54.08 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCC-----CcceeEEEEecCCCCCCCCCCCEEEEEe-C-CCeEEEEEcCCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKD-----GTDITMRDITNDTKSSQLDPSESTFLGL-D-DNRLCQWDMRDRS 396 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~-----~V~I~vvsfsPd~K~~q~~~g~~laSGS-~-D~tIklWD~R~~~ 396 (634)
..|.+||++|++.++++.-..+ ...-...+++|| |..++... + +++|-++|+.+++
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--------gk~l~V~n~~p~~~V~VvD~~~~k 139 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD--------NKTLLFYQFSPSPAVGVVDLEGKA 139 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCC--------CCEEEEecCCCCCEEEEEECCCCc
Confidence 5899999999999999874222 000124589999 45666554 4 8999999999763
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.0017 Score=74.77 Aligned_cols=156 Identities=9% Similarity=0.110 Sum_probs=95.4
Q ss_pred EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC--ceEEecccCCCCccccccccccccCcceEEEEECCCC--eEE
Q 047036 361 RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS--GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--SIV 436 (634)
Q Consensus 361 vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~--~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--~IA 436 (634)
+.++|..+. ...+++-+..++| +|.+.... .+--.+.||+..++ -+.+.+.. .+|
T Consensus 73 ~qws~h~a~-----~~wiVsts~qkai-iwnlA~ss~~aIef~lhghsrait---------------d~n~~~q~pdVla 131 (1081)
T KOG0309|consen 73 VQWSPHPAK-----PYWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAIT---------------DINFNPQHPDVLA 131 (1081)
T ss_pred eecccCCCC-----ceeEEecCcchhh-hhhhhcCCccceEEEEecCcccee---------------ccccCCCCCccee
Confidence 466666443 2356666665554 88887542 22123456665542 22334443 589
Q ss_pred EEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCc
Q 047036 437 VGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAP 515 (634)
Q Consensus 437 SGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~p 515 (634)
++|.|-.+.+||.++.+........-...-..|.++. |+..||++.-+-|++||++. .+..+...++|...
T Consensus 132 tcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~---gs~pl~s~K~~vs~----- 203 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK---GSTPLCSLKGHVSS----- 203 (1081)
T ss_pred eccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccC---CCcceEEeccccee-----
Confidence 9999999999998765433333333233446788884 66666679999999999872 34445555555431
Q ss_pred eeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChh
Q 047036 516 RLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQ 567 (634)
Q Consensus 516 r~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~ 567 (634)
...+.|.+.+.+ .....+.|+.|..||..+
T Consensus 204 -------------vn~~~fnr~~~s---------~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 204 -------------VNSIDFNRFKYS---------EIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred -------------eehHHHhhhhhh---------hhcccCCCCceeeecccc
Confidence 134566666543 233447799999999874
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0021 Score=72.04 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=74.5
Q ss_pred EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce------EEecccCCCCcccccccccc
Q 047036 345 IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI------VQNMVKGDSPVLHWTQGHQF 418 (634)
Q Consensus 345 ~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~------Vq~l~gh~s~V~~~~~g~~y 418 (634)
.+..|.||+..|+ .+.++++. +.++++|.|+||++|.+|..+.- .-++..|
T Consensus 727 rL~nf~GH~~~iR-ai~AidNE---------NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH------------- 783 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIR-AIAAIDNE---------NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH------------- 783 (1034)
T ss_pred eeecccCcHHHhH-HHHhcccc---------cceeeccCCceEEEEEeccccCccccceeeeEhhhc-------------
Confidence 4567999999876 55466653 67999999999999999865321 1222233
Q ss_pred ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccc---c--CCCCCeEEEEECCCCCEEEE--EcCCcEEEEE
Q 047036 419 SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAF---P--GLGSPITHVDVTYDGKWILG--TTDTYLILIC 490 (634)
Q Consensus 419 ~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L---~--GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD 490 (634)
+.++..+.|-.+- +|| |-||-|.|||.-.+| ..... + |-+.-|.+|- +-|...|.+ |...||+++|
T Consensus 784 --kk~i~~igfL~~lr~i~--ScD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 784 --KKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred --cCcccceeeeeccceee--eccCcceeecccccc-hhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeee
Confidence 3344555555554 555 459999999986554 33221 2 2233344332 123334444 6689999999
Q ss_pred ccc
Q 047036 491 TLF 493 (634)
Q Consensus 491 ~~~ 493 (634)
.+.
T Consensus 858 aRs 860 (1034)
T KOG4190|consen 858 ARS 860 (1034)
T ss_pred ccc
Confidence 874
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.99 E-value=0.074 Score=55.89 Aligned_cols=253 Identities=9% Similarity=-0.025 Sum_probs=144.4
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
.|..|.|-..++- +-.|..++.- +...+|...|.+... .-..|.+.|. ++.=--+.| -.+.
T Consensus 71 ~g~~F~p~s~~~k---c~~la~gG~~------g~fd~~~~~tn~~h~~~cd~snn~v~--~~~r~cd~~-------~~~~ 132 (344)
T KOG4532|consen 71 TGMTFTPGSFINK---CVTLADGGAS------GQFDLFACNTNDGHLYQCDVSNNDVT--LVKRYCDLK-------FPLN 132 (344)
T ss_pred ecccccchHhhcc---ccEEEecccc------ceeeeecccCcccceeeecccccchh--hhhhhcccc-------ccee
Confidence 5777888765432 2234444442 689999998765433 3345555543 222112322 3588
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc--cccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM--RQAK 456 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~--r~ak 456 (634)
.++.|.|+++.++..+-.. ..-|. ......+++.++++ .+++-+.-..|-+|-+..- .-.+
T Consensus 133 i~sndht~k~~~~~~~s~~---~~~h~-------------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~ 196 (344)
T KOG4532|consen 133 IASNDHTGKTMVVSGDSNK---FAVHN-------------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN 196 (344)
T ss_pred eccCCcceeEEEEecCccc---ceeec-------------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee
Confidence 8899999999988754210 11011 11224567889998 6888889999999986531 1112
Q ss_pred ccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccc
Q 047036 457 TAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIH 535 (634)
Q Consensus 457 t~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft 535 (634)
+.+..-++.=-+.+||......|. +.|+++.|||++. .+.... +.. .-+|.| .-.|.
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~---~~tpm~-~~s------------strp~h------nGa~R 254 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN---MATPMA-EIS------------STRPHH------NGAFR 254 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc---cccchh-hhc------------ccCCCC------CCceE
Confidence 234344555578899988888887 9999999999983 232211 111 111222 13455
Q ss_pred cccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeecccc---Ccc--ccC
Q 047036 536 GGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMH---DKF--AVT 610 (634)
Q Consensus 536 ~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~---d~f--~~~ 610 (634)
-++|+.. |...-++++--=.++.+=|+...++ |+ .|+..+ .+ .|+| +.| .|.
T Consensus 255 ~c~Fsl~---g~lDLLf~sEhfs~~hv~D~R~~~~--------------~q--~I~i~~-d~---~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 255 VCRFSLY---GLLDLLFISEHFSRVHVVDTRNYVN--------------HQ--VIVIPD-DV---ERKHNTQHIFGTNFN 311 (344)
T ss_pred EEEecCC---CcceEEEEecCcceEEEEEcccCce--------------ee--EEecCc-cc---ccccccccccccccc
Confidence 6667641 3223334444457788888874433 22 233222 22 1221 122 223
Q ss_pred CCCCCCEEEEcCCceeeeeccCC
Q 047036 611 DSPEAPLVVATPMKVSSISLSGR 633 (634)
Q Consensus 611 ~~~~~~iivA~~~~v~~~~~~~~ 633 (634)
.. ...+.|++...+.-.+|-.|
T Consensus 312 ~~-n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 312 NE-NESNDVKNELQGAEYNILSR 333 (344)
T ss_pred CC-Ccccccccchhhheeecccc
Confidence 32 45789999999988888554
No 281
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.97 E-value=0.016 Score=62.07 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=92.4
Q ss_pred EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
....|+-.|+..-..+ ..|.+|+++.-+--.+......++ ...++|||++ +++.+...|-.|.+|.
T Consensus 55 eW~ads~~ilC~~yk~-----~~vqvwsl~Qpew~ckIdeg~agl--s~~~WSPdgr-------hiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKD-----PKVQVWSLVQPEWYCKIDEGQAGL--SSISWSPDGR-------HILLTSEFDLRITVWS 120 (447)
T ss_pred eeeccceeeeeeeecc-----ceEEEEEeecceeEEEeccCCCcc--eeeeECCCcc-------eEeeeecceeEEEEEE
Confidence 3445666677666543 689999999877666666555553 4559999942 6777888899999999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC------------------------------
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL------------------------------ 440 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~------------------------------ 440 (634)
+.+..+. -+. | -+.++..++|+++| +.|.++.
T Consensus 121 L~t~~~~--~~~-~--------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 121 LNTQKGY--LLP-H--------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred eccceeE--Eec-c--------------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 9876432 111 1 11122344555655 3333332
Q ss_pred ------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 441 ------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 441 ------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
++-|-+||.-- ..+...-.-+-.|..+.+||-|++|+. +.|+.+|+.+
T Consensus 184 ieWsPdg~~laVwd~~L--eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 184 IEWSPDGNWLAVWDNVL--EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ceECCCCcEEEEecchh--hheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 33455676321 122112223456899999999999998 8999998865
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.5 Score=51.25 Aligned_cols=222 Identities=15% Similarity=0.192 Sum_probs=121.2
Q ss_pred CCCeEEEec----CeeeEEEccCCceecce-eEEEecCCCC--------CcccccCcceeeEEeCCcceEEecCCCCCCC
Q 047036 264 LDNSFLVSD----LGLQVYRNYNRGIHNKG-VSVRFDGGSS--------KIGSNSTPKKALLMRGETNMMLMSPLKDGKP 330 (634)
Q Consensus 264 ~D~sfvv~G----~~igV~k~~~~gl~~~~-~~~~~~~~~~--------~~g~~fsP~~~mL~~~D~~mllsss~d~~~~ 330 (634)
.+++||+.. ..|.|+....+|..... ..+.-.+..+ .+...|+|++ +.|++..-.-
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--------~~l~v~DLG~--- 166 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--------RYLVVPDLGT--- 166 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC--------CEEEEeecCC---
Confidence 577777753 58888888777733322 1111111100 1344455555 4444332211
Q ss_pred CCCcEEEEeCCCCcEEEE----EeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCCCCceEEecccC
Q 047036 331 QAPGVQQLDIETGKIVTE----WKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRDRSGIVQNMVKG 405 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~----lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~~~~~Vq~l~gh 405 (634)
..|++++++.|++... ++--. +-+ .+ .|+|++|+ .++- =-+++|-+|........+..|+.+
T Consensus 167 --Dri~~y~~~dg~L~~~~~~~v~~G~-GPR-Hi-~FHpn~k~--------aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 167 --DRIFLYDLDDGKLTPADPAEVKPGA-GPR-HI-VFHPNGKY--------AYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred --ceEEEEEcccCccccccccccCCCC-Ccc-eE-EEcCCCcE--------EEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 2699999998886432 22222 222 34 99999665 3333 347899999877532223344322
Q ss_pred CCCccccccccccccCcceEEEEECCCCeEEEEEC--CCcEEEEeccc--cc-cccccccCCCCCeEEEEECCCCCEEEE
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL--DGKIRLYSKTS--MR-QAKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~--DGtIRLWD~~t--~r-~akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
... -.+|.-.+...++..+++|++.-+|. ...|-+|-+.- ++ ......+-++..-+...|+|.|++|++
T Consensus 234 ~tl------P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 234 DTL------PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred ccC------ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 221 12344455567888999995444443 33677776542 21 011223456666799999999999998
Q ss_pred -Ec-CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEee
Q 047036 481 -TT-DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKL 520 (634)
Q Consensus 481 -S~-D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L 520 (634)
.. ...|.++-... .+|++.....-.. .|.|-++++
T Consensus 308 a~q~sd~i~vf~~d~--~TG~L~~~~~~~~---~p~Pvcv~f 344 (346)
T COG2706 308 ANQKSDNITVFERDK--ETGRLTLLGRYAV---VPEPVCVKF 344 (346)
T ss_pred EccCCCcEEEEEEcC--CCceEEecccccC---CCCcEEEEE
Confidence 43 35588886532 3565443333222 255555543
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0069 Score=63.88 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=73.5
Q ss_pred EEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCccccccccccccCcceEEEEECCC-C-eEEEE
Q 047036 362 DITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-G-SIVVG 438 (634)
Q Consensus 362 sfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G-~IASG 438 (634)
.|++. +..++++.+++.+-..+..... +.||+... |+|. ...+.|+.. . .+.+|
T Consensus 128 D~~~~--------~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-----------He~E----~Wta~f~~~~pnlvytG 184 (339)
T KOG0280|consen 128 DISTS--------GTKIFVSDSRGSISGVYETEMVLEKVQTWKV-----------HEFE----AWTAKFSDKEPNLVYTG 184 (339)
T ss_pred Eeecc--------CceEEEEcCCCcEEEEecceeeeeecccccc-----------ccee----eeeeecccCCCceEEec
Confidence 66765 5679999999999866543221 12344433 3332 223344433 2 68999
Q ss_pred ECCCcEEEEecccccccc-ccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcc
Q 047036 439 SLDGKIRLYSKTSMRQAK-TAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 439 S~DGtIRLWD~~t~r~ak-t~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~ 492 (634)
|.||.++-||.+..+... +...-|...|.+|--|| ++.+|++ +.|.+|++||++
T Consensus 185 gDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 185 GDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred CCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 999999999976321111 22345888999998884 6889999 999999999998
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.88 E-value=0.065 Score=59.50 Aligned_cols=115 Identities=18% Similarity=0.139 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-CC--eEEEEEcCCCCceEEecccCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-DN--RLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-D~--tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
..|+++|+.+|+. +.+..+... .+. -.|+|| |+.|+-.++ .+ .|+++|+.++.. +.+..
T Consensus 257 ~~Iy~~dl~~g~~-~~LT~~~~~-d~~-p~~SPD--------G~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~----- 318 (419)
T PRK04043 257 PDIYLYDTNTKTL-TQITNYPGI-DVN-GNFVED--------DKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVF----- 318 (419)
T ss_pred cEEEEEECCCCcE-EEcccCCCc-cCc-cEECCC--------CCEEEEEECCCCCceEEEEECCCCCe--EeCcc-----
Confidence 5799999998874 445444321 112 379999 455554443 22 688888876542 22310
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEECC---------CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLD---------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL 479 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS~D---------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll 479 (634)
.+. .. .+++|+| +||..+.. ..|.+.|+.++. . +.|...+ ...+..|||||++|+
T Consensus 319 ----~g~-----~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~-~~LT~~~-~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 319 ----HGK-----NN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-I-RRLTANG-VNQFPRFSSDGGSIM 383 (419)
T ss_pred ----CCC-----cC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-e-EECCCCC-CcCCeEECCCCCEEE
Confidence 011 11 2578998 66655543 368888987753 3 3344332 334689999999987
Q ss_pred E
Q 047036 480 G 480 (634)
Q Consensus 480 S 480 (634)
-
T Consensus 384 f 384 (419)
T PRK04043 384 F 384 (419)
T ss_pred E
Confidence 5
No 285
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.85 E-value=0.39 Score=47.28 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=81.5
Q ss_pred CcEEEEeCCCCcEEEEE-eccCCCcc-eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 333 PGVQQLDIETGKIVTEW-KFEKDGTD-ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~l-kgH~~~V~-I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
+.|+.+|+++|+++.+. ........ .....+... +..++.+..++.|..+|+++++ ++-....+.....
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--------GDRLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGS 156 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--------TTEEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS
T ss_pred eeeEecccCCcceeeeeccccccccccccccCceEe--------cCEEEEEeccCcEEEEecCCCc-EEEEeecCCCCCC
Confidence 58999999999998884 44321110 011122222 4688999999999999999875 3444332221100
Q ss_pred ccccccccccCcceEEEEECCCCeEEEEECCCc-EEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEE
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGK-IRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLIL 488 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~DGt-IRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrL 488 (634)
..+..-....+-....++.|.+++.+|. +.+ |..+++ .+-..+ .+. +..+ +.++|..|+. +.++.|..
T Consensus 157 -----~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~-~~w~~~-~~~-~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 157 -----SPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE-KLWSKP-ISG-IYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp -------EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE-EEEEEC-SS--ECEC-EECCCTEEEEEETTTEEEE
T ss_pred -----cceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC-EEEEec-CCC-ccCC-ceeeCCEEEEEeCCCEEEE
Confidence 0000001122323334558888888885 666 988874 223333 122 3332 4577777777 77999999
Q ss_pred EEcc
Q 047036 489 ICTL 492 (634)
Q Consensus 489 WD~~ 492 (634)
||+.
T Consensus 227 ~d~~ 230 (238)
T PF13360_consen 227 LDLK 230 (238)
T ss_dssp EETT
T ss_pred EECC
Confidence 9986
No 286
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.84 E-value=0.0058 Score=65.58 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=67.7
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
++-....+.-..+.++++|.+.| ...++.|- ...++||+.|..|-+||+-.+......+.+|+..|
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~--~~l~Wd~~--------~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV---- 243 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEV--TCLKWDPG--------QRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV---- 243 (404)
T ss_pred EEEEEeecCCceEEEEcCcccce--EEEEEcCC--------CcEEEeccccCceEEEeccCCcceeeeeccchhhh----
Confidence 34445556678899999999976 46688875 47999999999999999976655556677776543
Q ss_pred cccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccc
Q 047036 414 QGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t 451 (634)
++++--+ --.+.|++.||.|-+||...
T Consensus 244 -----------~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 244 -----------QALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -----------hhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 1111111 12689999999999999654
No 287
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0023 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=31.0
Q ss_pred cccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 456 KTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 456 kt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
...+.+|..+|++++++|++.++++ +.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4456688999999999999999998 8999999996
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.68 E-value=0.32 Score=52.12 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=90.6
Q ss_pred ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCC-CCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe
Q 047036 304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIE-TGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL 382 (634)
Q Consensus 304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDle-TGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS 382 (634)
.|+|++..|+..+... ....+.|-+||+. +-+.+.+|..|.-+-. - +.+.|| ++.|+.+-
T Consensus 57 ~fs~dG~~LytTEnd~---------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-e-l~l~pD--------G~tLvVAN 117 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDY---------ETGRGVIGVYDAARGYRRIGEFPSHGIGPH-E-LLLMPD--------GETLVVAN 117 (305)
T ss_pred EEcCCCCEEEEecccc---------CCCcEEEEEEECcCCcEEEeEecCCCcChh-h-EEEcCC--------CCEEEEEc
Confidence 4788887776655532 2234789999999 6689999988765532 2 367888 44444442
Q ss_pred ------------------CCCeEEEEEcCCCCceEEe--cccCCCCccccccccccccCcceEEEEECCCCeEEEEECC-
Q 047036 383 ------------------DDNRLCQWDMRDRSGIVQN--MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD- 441 (634)
Q Consensus 383 ------------------~D~tIklWD~R~~~~~Vq~--l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~D- 441 (634)
.+-+|-+.|.+++. ++.. |. ... +...+.-++..++|.++.|...
T Consensus 118 GGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp---------~~~----~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 118 GGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELP---------PDL----HQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred CCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecC---------ccc----cccceeeEEecCCCcEEEEEecC
Confidence 22233334444332 1111 10 001 2234667788888877766532
Q ss_pred C-------cEEEEecccccccccc-------ccCCCCCeEEEEECCCCCEEEEEc--CCcEEEEEcc
Q 047036 442 G-------KIRLYSKTSMRQAKTA-------FPGLGSPITHVDVTYDGKWILGTT--DTYLILICTL 492 (634)
Q Consensus 442 G-------tIRLWD~~t~r~akt~-------L~GH~d~ItsVdfSpDGk~LlSS~--D~tIrLWD~~ 492 (634)
| -|-+++... .... .......|=||+|+++|.+|++|+ -+.+.+||..
T Consensus 184 g~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 184 GDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred CCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 2 133333221 1111 224567899999999999998855 6899999975
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.63 E-value=0.057 Score=56.69 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=89.9
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC-ceEEecccCCCCcc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS-GIVQNMVKGDSPVL 410 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~-~~Vq~l~gh~s~V~ 410 (634)
|.|+++++++-+- . .+..|-..|++...+++|| +...++-++-+.|+++-+.... .++.+....+
T Consensus 137 dht~k~~~~~~~s-~-~~~~h~~~~~~ns~~~snd--------~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t---- 202 (344)
T KOG4532|consen 137 DHTGKTMVVSGDS-N-KFAVHNQNLTQNSLHYSND--------PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT---- 202 (344)
T ss_pred CcceeEEEEecCc-c-cceeeccccceeeeEEcCC--------CceEEEecCCCcceEEEeCCccceeeeeEeccc----
Confidence 3789988887432 2 2334444333445688998 5688899999999999876443 2333111000
Q ss_pred ccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccccc----ccccCCCCCeEEEEECCCCCE--EEEE-c
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAK----TAFPGLGSPITHVDVTYDGKW--ILGT-T 482 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ak----t~L~GH~d~ItsVdfSpDGk~--LlSS-~ 482 (634)
+..-| |..++... .+|+|+.||++-+||++.++... .+-|.|.+.|+.+.|||-|.. |+-| -
T Consensus 203 ---------~D~gF-~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 203 ---------SDHGF-YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred ---------CCCce-eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 11112 44566655 89999999999999998754221 234579999999999987753 2224 4
Q ss_pred CCcEEEEEcc
Q 047036 483 DTYLILICTL 492 (634)
Q Consensus 483 D~tIrLWD~~ 492 (634)
-+++.+.|++
T Consensus 273 fs~~hv~D~R 282 (344)
T KOG4532|consen 273 FSRVHVVDTR 282 (344)
T ss_pred cceEEEEEcc
Confidence 6889999986
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.57 E-value=0.0023 Score=73.80 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=91.0
Q ss_pred EEEEeCCC--CcEE-EEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 335 VQQLDIET--GKIV-TEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 335 IrlWDleT--GK~V-~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
-.+|.+.. -+.| --+-||+..| +-..|.|.. ...+++++-|-.+..||+|+....+....
T Consensus 93 aiiwnlA~ss~~aIef~lhghsrai--td~n~~~q~-------pdVlatcsvdt~vh~wd~rSp~~p~ys~~-------- 155 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAI--TDINFNPQH-------PDVLATCSVDTYVHAWDMRSPHRPFYSTS-------- 155 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccce--eccccCCCC-------CcceeeccccccceeeeccCCCcceeeee--------
Confidence 45666542 2223 3467888775 233777752 36999999999999999998765543321
Q ss_pred cccccccccCcceEEEEEC-CCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC-CEEEE-EcCCcEEE
Q 047036 412 WTQGHQFSRGTNFQCFAST-GDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG-KWILG-TTDTYLIL 488 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s-~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG-k~LlS-S~D~tIrL 488 (634)
.+...-+.|+.+ .++.+.+.|..+.|++||.+-+-.....+++|...|++++|..-- ..|.+ ++|++|+.
T Consensus 156 -------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 156 -------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred -------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 111112334444 356777778889999999876545667899999999999997432 23455 89999999
Q ss_pred EEc
Q 047036 489 ICT 491 (634)
Q Consensus 489 WD~ 491 (634)
||.
T Consensus 229 w~y 231 (1081)
T KOG0309|consen 229 WDY 231 (1081)
T ss_pred ecc
Confidence 985
No 291
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.51 E-value=0.17 Score=60.35 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=109.5
Q ss_pred EEeCCCeEEEEEcCCCCceEEecccCCCC-ccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccc-ccccc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMVKGDSP-VLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM-RQAKT 457 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~gh~s~-V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~-r~akt 457 (634)
.....+.|+..|+..+ ++|+...-|... |. +|.....|.. .++ .....|=.++.|-.||.+-. +.+..
T Consensus 499 ~~~~~~~ly~mDLe~G-KVV~eW~~~~~~~v~------~~~p~~K~aq--lt~-e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERG-KVVEEWKVHDDIPVV------DIAPDSKFAQ--LTN-EQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred cCCCCCceEEEecCCC-cEEEEeecCCCccee------Eecccccccc--cCC-CceEEEECCCceEEeccCCCCCceee
Confidence 3346789999999875 577776543321 21 1111111211 112 25677888889999997631 11110
Q ss_pred -ccc--CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcccccCCCC-eeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 458 -AFP--GLGSPITHVDVTYDGKWILGTTDTYLILICTLFSDKDGK-TKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 458 -~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~-~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
.+. ..+....|++-+.+|...++|.+|-|||+|-. |+ .++.|- .+| .+|.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-----g~~AKT~lp-~lG--------------------~pI~ 622 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-----GKRAKTALP-GLG--------------------DPII 622 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-----chhhhhcCC-CCC--------------------CCee
Confidence 111 24456889999999998888999999999932 21 111111 111 1111
Q ss_pred cccccccccccCCCCceEEEEEcCCeEEEEeChhhhccc---ccccccc-cCCcceeeEEEeccCCCe--------eeec
Q 047036 534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSA---HECYRNQ-QGLKSCYCYKIVLKDESI--------VESR 601 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~---~~~y~~~-~~~~~~~~Y~i~~~~~~i--------~~~~ 601 (634)
-.-. |-+| +||++.+..|+++.+.. +..|+ ..-|... .+-+.+.|+.|...++.+ ..+.
T Consensus 623 ~iDv-----t~DG---kwilaTc~tyLlLi~t~-~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~ 693 (794)
T PF08553_consen 623 GIDV-----TADG---KWILATCKTYLLLIDTL-IKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPIS 693 (794)
T ss_pred EEEe-----cCCC---cEEEEeecceEEEEEEe-eecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCce
Confidence 1111 2225 89999999999999974 22221 0001000 113567888998877654 3345
Q ss_pred cccCccccCCCCCCCEEEEcC
Q 047036 602 FMHDKFAVTDSPEAPLVVATP 622 (634)
Q Consensus 602 f~~d~f~~~~~~~~~iivA~~ 622 (634)
|-.-.|..|.+..-.-|||+-
T Consensus 694 Ft~a~Fnt~~~~~E~~Ivtst 714 (794)
T PF08553_consen 694 FTPAKFNTGIGKQETSIVTST 714 (794)
T ss_pred eeceEEecCCCCccceEEEec
Confidence 555555444333345555543
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.49 E-value=0.52 Score=49.82 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=28.3
Q ss_pred CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 462 LGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
-.+.|..|.+||||+.||+ ..++.|.||++-
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 3578999999999999999 999999999964
No 293
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.48 E-value=0.0088 Score=39.40 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=32.6
Q ss_pred CcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 343 GKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 343 GK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
++++..+..|...| ..++|.|. ++.+++|+.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i--~~~~~~~~--------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPV--TSVAFSPD--------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCce--eEEEECCC--------CCEEEEecCCCeEEEcC
Confidence 57788899998875 45588886 57899999999999996
No 294
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=96.46 E-value=0.1 Score=56.41 Aligned_cols=177 Identities=16% Similarity=0.145 Sum_probs=106.4
Q ss_pred CCeEEEe-cCeeeEEEccCCceecceeEEEecCCCCCccccc--CcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeC-
Q 047036 265 DNSFLVS-DLGLQVYRNYNRGIHNKGVSVRFDGGSSKIGSNS--TPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDI- 340 (634)
Q Consensus 265 D~sfvv~-G~~igV~k~~~~gl~~~~~~~~~~~~~~~~g~~f--sP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDl- 340 (634)
++-|-+. +..++||+..+.|-.+. .=..+ +|..+|-+..+...|+.+=.+ +++.-.-+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wp------------sI~~~mP~~~~~~~y~~e~~~L~vg~~n------gtvtefs~s 98 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWP------------SIYHYMPSPCSAMEYVSESRRLYVGQDN------GTVTEFALS 98 (404)
T ss_pred CCeEEccccceeeeEEeccccccCc------------hhhhhCCCCceEeeeeccceEEEEEEec------ceEEEEEhh
Confidence 4445554 46889999876652221 11112 344566666777666666544 57776643
Q ss_pred ---CCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccc
Q 047036 341 ---ETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQ 417 (634)
Q Consensus 341 ---eTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~ 417 (634)
+.--.++.+..|...| ..+-|+-. .+++++.+.|+.+---=.+.+.. |.
T Consensus 99 edfnkm~~~r~~~~h~~~v--~~~if~~~--------~e~V~s~~~dk~~~~hc~e~~~~----lg-------------- 150 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARV--SAIVFSLT--------HEWVLSTGKDKQFAWHCTESGNR----LG-------------- 150 (404)
T ss_pred hhhhhcchhhhhhhhhcce--eeEEecCC--------ceeEEEeccccceEEEeeccCCc----cc--------------
Confidence 4445678888998875 33345432 47999999887663322333221 21
Q ss_pred cccCcceEEEEECCCC---eEEEEECCCcE---EEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEE
Q 047036 418 FSRGTNFQCFASTGDG---SIVVGSLDGKI---RLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILIC 490 (634)
Q Consensus 418 y~~~~~fssva~s~dG---~IASGS~DGtI---RLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD 490 (634)
.+.+.|.++..+- +..+|-.-|.| |+.. ... ...+++.||.++|+++++.|--+.|.| .+|..+.+||
T Consensus 151 ---~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~-~~~-~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 151 ---GYNFETPASALQFDALYAFVGDHSGQITMLKLEQ-NGC-QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred ---ceEeeccCCCCceeeEEEEecccccceEEEEEee-cCC-ceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 1122222222110 33344444444 3333 222 366789999999999999999999999 8999999999
Q ss_pred cc
Q 047036 491 TL 492 (634)
Q Consensus 491 ~~ 492 (634)
+-
T Consensus 226 ig 227 (404)
T KOG1409|consen 226 IG 227 (404)
T ss_pred cc
Confidence 74
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.27 Score=53.21 Aligned_cols=163 Identities=16% Similarity=0.222 Sum_probs=95.4
Q ss_pred CCcEEEEeCC--CCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC---C--eEEEEEcCCCCceEEec
Q 047036 332 APGVQQLDIE--TGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD---N--RLCQWDMRDRSGIVQNM 402 (634)
Q Consensus 332 ~~TIrlWDle--TGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D---~--tIklWD~R~~~~~Vq~l 402 (634)
++-|+.|++. +|++ ++.. .+...+ +=++|+|+ ++.|+++-.+ + ..+.||.+.+. +.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v-~~~~np--tyl~~~~~--------~~~LY~v~~~~~~ggvaay~iD~~~G~--Lt~l 81 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLV-AELGNP--TYLAVNPD--------QRHLYVVNEPGEEGGVAAYRIDPDDGR--LTFL 81 (346)
T ss_pred CCceEEEEEeCcccccchhhhc-cccCCC--ceEEECCC--------CCEEEEEEecCCcCcEEEEEEcCCCCe--EEEe
Confidence 4679999886 4543 2222 233332 33599998 4578888665 3 34677777553 1222
Q ss_pred ccCCCCccccccccccccCcceEEEEECCCC-eEEEEE-CCCcEEEEeccc-cc-cccccccCCCCC----------eEE
Q 047036 403 VKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDGKIRLYSKTS-MR-QAKTAFPGLGSP----------ITH 468 (634)
Q Consensus 403 ~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DGtIRLWD~~t-~r-~akt~L~GH~d~----------Its 468 (634)
. + +.....+-+-++++++| +|++++ .-|.|+++=++. +. .....+..|..+ +-.
T Consensus 82 n-~-----------~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 82 N-R-----------QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred e-c-----------cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 1 1 11112222567889999 677776 448899988743 21 011122345555 889
Q ss_pred EEECCCCCEEEEEc--CCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCC
Q 047036 469 VDVTYDGKWILGTT--DTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLD 524 (634)
Q Consensus 469 VdfSpDGk~LlSS~--D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~ 524 (634)
..|+|||++|++.. -..|.++++. +|++...-...+ ....-||-+.+.|..
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~----dg~L~~~~~~~v-~~G~GPRHi~FHpn~ 202 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLD----DGKLTPADPAEV-KPGAGPRHIVFHPNG 202 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcc----cCcccccccccc-CCCCCcceEEEcCCC
Confidence 99999999998832 2368888875 454322111112 223448999988876
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.40 E-value=0.52 Score=47.53 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=94.0
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEec--cC-CCcceeEEEEecCCCCCCCCCCCEEEEEeC
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKF--EK-DGTDITMRDITNDTKSSQLDPSESTFLGLD 383 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkg--H~-~~V~I~vvsfsPd~K~~q~~~g~~laSGS~ 383 (634)
|.++.+...+..++++... .++++|+.+|++..-... .. ......-+++.|+ |.+.++.+.
T Consensus 42 ~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--------G~ly~t~~~ 105 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--------GNLYVTDSG 105 (246)
T ss_dssp EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--------S-EEEEEEC
T ss_pred CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--------CCEEEEecC
Confidence 6666666466666666643 477779999976554443 11 1111233467776 666666554
Q ss_pred C--------CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eE-EEEECCCcEEEEeccccc
Q 047036 384 D--------NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI-VVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 384 D--------~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I-ASGS~DGtIRLWD~~t~r 453 (634)
. +.|.++++. +. +..+.. + -..-..++++++| .| ++-+..+.|.-||.....
T Consensus 106 ~~~~~~~~~g~v~~~~~~-~~--~~~~~~----------~-----~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 106 GGGASGIDPGSVYRIDPD-GK--VTVVAD----------G-----LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp CBCTTCGGSEEEEEEETT-SE--EEEEEE----------E-----ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CCccccccccceEEECCC-Ce--EEEEec----------C-----cccccceEECCcchheeecccccceeEEEeccccc
Confidence 4 568889987 32 222210 0 0112578999999 45 567889999999985311
Q ss_pred c------ccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036 454 Q------AKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 454 ~------akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
. ....+++.....-++++.++|+..++ -..+.|.++|. +|+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p-----~G~~~~ 218 (246)
T PF08450_consen 168 GELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP-----DGKLLR 218 (246)
T ss_dssp CCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET-----TSCEEE
T ss_pred cceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC-----CccEEE
Confidence 1 11123333234789999999998888 67889999984 466543
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.27 E-value=0.011 Score=67.14 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=56.9
Q ss_pred cCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 420 RGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 420 ~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
...++.|+|.+|+. .++.|+.||.|+|||... ..+++.-+.-..+.|+++|+|..++. +..+-|.+||+.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~---~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTR---GVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCC---CeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34567888999987 899999999999999754 23444445556789999999999998 778999999975
No 298
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.13 E-value=0.029 Score=70.39 Aligned_cols=139 Identities=10% Similarity=0.092 Sum_probs=97.5
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI 398 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~ 398 (634)
..++++.| +.|++|--..|+.|-.|+.-... .++-..|+.+ |+....+-.||-|.+|.+.. ++
T Consensus 2222 ~Yltgs~d------gsv~~~~w~~~~~v~~~rt~g~s-~vtr~~f~~q--------Gnk~~i~d~dg~l~l~q~~p--k~ 2284 (2439)
T KOG1064|consen 2222 YYLTGSQD------GSVRMFEWGHGQQVVCFRTAGNS-RVTRSRFNHQ--------GNKFGIVDGDGDLSLWQASP--KP 2284 (2439)
T ss_pred eEEecCCC------ceEEEEeccCCCeEEEeeccCcc-hhhhhhhccc--------CCceeeeccCCceeecccCC--cc
Confidence 46677665 79999999999999888754432 2233356654 67788888999999999862 34
Q ss_pred EEecccCCCCccccccccccccCcceEEEEECCCCeEEEE---ECCCcEEEEeccc--cccccccccCCCCCeEEEEECC
Q 047036 399 VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVG---SLDGKIRLYSKTS--MRQAKTAFPGLGSPITHVDVTY 473 (634)
Q Consensus 399 Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASG---S~DGtIRLWD~~t--~r~akt~L~GH~d~ItsVdfSp 473 (634)
+...+.|+... +.+.|- + ..+|++ +.++.+.|||..- ++.... ..|-..++.+++-|
T Consensus 2285 ~~s~qchnk~~----------~Df~Fi--~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2285 YTSWQCHNKAL----------SDFRFI--G----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred eeccccCCccc----------cceeee--e----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 45555555432 222232 1 234544 4788999999542 221112 57889999999999
Q ss_pred CCCEEEE-EcCCcEEEEEcc
Q 047036 474 DGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 474 DGk~LlS-S~D~tIrLWD~~ 492 (634)
.-+.|+| +.++-|+|||++
T Consensus 2347 ~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred cceEEEecCCcCcEEEeehH
Confidence 9999999 999999999987
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.05 E-value=1.8 Score=53.07 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=50.5
Q ss_pred EEEEECCCC-eEEEEEC---CCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036 425 QCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILGTTDTYLILICT 491 (634)
Q Consensus 425 ssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~ 491 (634)
.+++.-|.| .||+.-. .-.|-+|...+.|.-...|+ .....|..|.+++|+..||.-....|.||-+
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~ 332 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTR 332 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEe
Confidence 356788998 5777654 57899999887653334454 4567899999999999999855556999975
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.01 E-value=0.095 Score=62.31 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=98.0
Q ss_pred eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036 311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW 390 (634)
Q Consensus 311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW 390 (634)
+++.+ ...+++++-. +.|-..|+.+++..+.......+| .+..-+ ++.+++|..-|+|.+=
T Consensus 142 ~~~~~-~~~~i~Gg~Q------~~li~~Dl~~~~e~r~~~v~a~~v--~imR~N----------nr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 142 SLHMG-PSTLIMGGLQ------EKLIHIDLNTEKETRTTNVSASGV--TIMRYN----------NRNLFCGDTRGTVFLR 202 (1118)
T ss_pred HhccC-Ccceeecchh------hheeeeecccceeeeeeeccCCce--EEEEec----------CcEEEeecccceEEee
Confidence 45553 3445555543 368889999999999988877665 343433 4789999999999999
Q ss_pred EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEE---------CCCcEEEEecccccccccccc
Q 047036 391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGS---------LDGKIRLYSKTSMRQAKTAFP 460 (634)
Q Consensus 391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS---------~DGtIRLWD~~t~r~akt~L~ 460 (634)
|+++- ..++++..|++.+.++ +=.| .|++++ .|.-|++||++.+| +...++
T Consensus 203 D~~s~-~~iht~~aHs~siSDf-----------------Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~ 263 (1118)
T KOG1275|consen 203 DPNSF-ETIHTFDAHSGSISDF-----------------DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQ 263 (1118)
T ss_pred cCCcC-ceeeeeeccccceeee-----------------eccCCeEEEeecccccccccccchhhhhhhhhhh-ccCCcc
Confidence 99975 4578888887765322 1122 444444 47789999999886 666665
Q ss_pred CCCCCeEEEEECCCC--CEEEEEcCCcEEEEEcc
Q 047036 461 GLGSPITHVDVTYDG--KWILGTTDTYLILICTL 492 (634)
Q Consensus 461 GH~d~ItsVdfSpDG--k~LlSS~D~tIrLWD~~ 492 (634)
=|-+| .-|.|.|-= +.+++|+-++..+.|+.
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 55555 456666643 33444888888888854
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.99 E-value=0.0074 Score=62.88 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=57.9
Q ss_pred eEEEEECCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEE-EcCCcEEEEEcc
Q 047036 424 FQCFASTGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 424 fssva~s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlS-S~D~tIrLWD~~ 492 (634)
++++|..|.. .+++|+.||.|-|||.+.......+|..|..+|+-|-|.| ++..|.+ +.|+.|.-||..
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 6778887765 5789999999999998765445567889999999999997 5677777 999999999964
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.008 Score=70.70 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=65.6
Q ss_pred CcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-CC-cEEEEEcccccC
Q 047036 421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-DT-YLILICTLFSDK 496 (634)
Q Consensus 421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D~-tIrLWD~~~~~~ 496 (634)
..-|+|++|+.+. +|++|+..|.|++|++.++ +......+|+.+|+.|-=|-||..+++ +. .. -.-||++. .
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~---s 1176 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS---S 1176 (1516)
T ss_pred ccceeeEEeecCCceEEeeeccceEEEEEccCc-cccccccccccccccccccCCcceeeeeccccCchHHHhccc---c
Confidence 3568999999876 8999999999999999988 466778899999999999999999987 33 22 46799975 2
Q ss_pred CCCeeeeecC
Q 047036 497 DGKTKTGFSG 506 (634)
Q Consensus 497 ~G~~~~gF~g 506 (634)
.|..+..|.+
T Consensus 1177 ~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1177 TGGPRHSFDE 1186 (1516)
T ss_pred ccCccccccc
Confidence 4555555543
No 303
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.72 E-value=0.94 Score=48.67 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=72.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-----eCCCeEEEEEcCCCCceEEecccCC-
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-----LDDNRLCQWDMRDRSGIVQNMVKGD- 406 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-----S~D~tIklWD~R~~~~~Vq~l~gh~- 406 (634)
..+.+||..+|+.++.+....+.--.-=-.|||| |+.|++. ...+.|-+||++.+-..+..+..|.
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d--------G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI 99 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD--------GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI 99 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC--------CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc
Confidence 5788999999998866533222110001279999 6777775 5578999999983323344544322
Q ss_pred CCccccccccccccCcceEEEEECCCC-eEEEE--E----------------CCCcEEEEecccccccc--cccc--CCC
Q 047036 407 SPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG--S----------------LDGKIRLYSKTSMRQAK--TAFP--GLG 463 (634)
Q Consensus 407 s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG--S----------------~DGtIRLWD~~t~r~ak--t~L~--GH~ 463 (634)
.| |+ +...||| .|++| + .+-.+-+-|..+++ .. ..|+ -|.
T Consensus 100 GP-------He---------l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 100 GP-------HE---------LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELPPDLHQ 162 (305)
T ss_pred Ch-------hh---------EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecCccccc
Confidence 11 11 2345666 44443 2 33344444555543 22 2464 377
Q ss_pred CCeEEEEECCCCCEEEE
Q 047036 464 SPITHVDVTYDGKWILG 480 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlS 480 (634)
..|++|++.+||..+.+
T Consensus 163 lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFA 179 (305)
T ss_pred cceeeEEecCCCcEEEE
Confidence 89999999999987665
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.67 E-value=0.6 Score=50.78 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=78.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCC--cce---eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDG--TDI---TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDS 407 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~--V~I---~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s 407 (634)
+.|+..|+++|+.+.++...... -.+ ..+.-+|- +. +..++.++.++.+..+|+++++. +-..
T Consensus 215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~-----v~-~~~vy~~~~~g~l~ald~~tG~~-~W~~----- 282 (394)
T PRK11138 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV-----VV-GGVVYALAYNGNLVALDLRSGQI-VWKR----- 282 (394)
T ss_pred CEEEEEEccCChhhheeccccCCCccchhcccccCCCcE-----EE-CCEEEEEEcCCeEEEEECCCCCE-EEee-----
Confidence 57999999999987665422110 000 00011221 01 35788888999999999998653 2111
Q ss_pred CccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEEEcCCcE
Q 047036 408 PVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILGTTDTYL 486 (634)
Q Consensus 408 ~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlSS~D~tI 486 (634)
. +.. ...++ -.+++|++++.+|.|..+|..+++ .+-..+..... ..+..+ .+|+.++.+.|++|
T Consensus 283 -------~--~~~---~~~~~-~~~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~l 347 (394)
T PRK11138 283 -------E--YGS---VNDFA-VDGGRIYLVDQNDRVYALDTRGGV-ELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGYL 347 (394)
T ss_pred -------c--CCC---ccCcE-EECCEEEEEcCCCeEEEEECCCCc-EEEcccccCCCcccCCEE-ECCEEEEEeCCCEE
Confidence 0 000 01111 135688889999999999988764 22111111111 112222 25655555899999
Q ss_pred EEEEcccccCCCCeee
Q 047036 487 ILICTLFSDKDGKTKT 502 (634)
Q Consensus 487 rLWD~~~~~~~G~~~~ 502 (634)
..+|+. +|+.+-
T Consensus 348 ~~ld~~----tG~~~~ 359 (394)
T PRK11138 348 HWINRE----DGRFVA 359 (394)
T ss_pred EEEECC----CCCEEE
Confidence 999975 576543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.60 E-value=0.27 Score=57.97 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=85.6
Q ss_pred CCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCc
Q 047036 330 PQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 330 ~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V 409 (634)
+|.+.|++.+.. |.. ++-..|+. + +.+ |+.++|||.||+|-+--+-+....
T Consensus 56 tH~g~v~~~~~~-~~~-~~~~~~s~-----~-----~~~------Gey~asCS~DGkv~I~sl~~~~~~----------- 106 (846)
T KOG2066|consen 56 THRGAVYLTTCQ-GNP-KTNFDHSS-----S-----ILE------GEYVASCSDDGKVVIGSLFTDDEI----------- 106 (846)
T ss_pred cccceEEEEecC-Ccc-cccccccc-----c-----ccC------CceEEEecCCCcEEEeeccCCccc-----------
Confidence 355889999876 555 44444542 1 211 799999999999998776654321
Q ss_pred cccccccccccCcceEEEEECCC------CeEEEEECCCcEEEEeccccccccc-cccCCCCCeEEEEECCCCCEEEEEc
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGD------GSIVVGSLDGKIRLYSKTSMRQAKT-AFPGLGSPITHVDVTYDGKWILGTT 482 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~d------G~IASGS~DGtIRLWD~~t~r~akt-~L~GH~d~ItsVdfSpDGk~LlSS~ 482 (634)
|++.-+.++-+++++|+ +++++|+.-| +-|+...=..+.+. .+..-.++|.+|.+. |.+||=+.
T Consensus 107 ------~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 107 ------TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred ------eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 12223456778899887 4799999999 88998643322222 244445789998875 66666589
Q ss_pred CCcEEEEEcc
Q 047036 483 DTYLILICTL 492 (634)
Q Consensus 483 D~tIrLWD~~ 492 (634)
|.-|+++|+.
T Consensus 178 d~Gv~vyd~~ 187 (846)
T KOG2066|consen 178 DDGVKVYDTP 187 (846)
T ss_pred CCCcEEEecc
Confidence 9999999974
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.59 E-value=0.23 Score=53.99 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=76.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.++.+|+.+|+.+-+... .... .+ .+ . +..++.++.++.|..+|+.++.. +-..
T Consensus 266 g~l~ald~~tG~~~W~~~~--~~~~-~~-~~--~--------~~~vy~~~~~g~l~ald~~tG~~-~W~~---------- 320 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY--GSVN-DF-AV--D--------GGRIYLVDQNDRVYALDTRGGVE-LWSQ---------- 320 (394)
T ss_pred CeEEEEECCCCCEEEeecC--CCcc-Cc-EE--E--------CCEEEEEcCCCeEEEEECCCCcE-EEcc----------
Confidence 6899999999998754332 2110 11 11 1 46899999999999999987642 2111
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
.. . ....+++.+. -+|+|++++.||.|.+.|..+++ .+...+-++..+.+=-+-.+|+.++.+.|++|..+.
T Consensus 321 --~~-~-~~~~~~sp~v-~~g~l~v~~~~G~l~~ld~~tG~-~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 321 --SD-L-LHRLLTAPVL-YNGYLVVGDSEGYLHWINREDGR-FVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred --cc-c-CCCcccCCEE-ECCEEEEEeCCCEEEEEECCCCC-EEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 00 0 0001111111 26799999999999999998875 443332122233321112466666669999988775
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.48 E-value=0.072 Score=60.67 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=50.5
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV 437 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS 437 (634)
.+++++|+ .+.++.|+.|++|.+||.+.+ +..+.. ....-+.++..|+| .|++
T Consensus 263 ~~ca~sp~--------E~kLvlGC~DgSiiLyD~~~~---~t~~~k---------------a~~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 263 ICCARSPS--------EDKLVLGCEDGSIILYDTTRG---VTLLAK---------------AEFIPTLIAWHPDGAIFVV 316 (545)
T ss_pred eEEecCcc--------cceEEEEecCCeEEEEEcCCC---eeeeee---------------ecccceEEEEcCCCcEEEE
Confidence 45699998 579999999999999998754 222210 11223667889999 7899
Q ss_pred EECCCcEEEEecc
Q 047036 438 GSLDGKIRLYSKT 450 (634)
Q Consensus 438 GS~DGtIRLWD~~ 450 (634)
||.-|.|.+||..
T Consensus 317 ~s~qGelQ~FD~A 329 (545)
T PF11768_consen 317 GSEQGELQCFDMA 329 (545)
T ss_pred EcCCceEEEEEee
Confidence 9999999999964
No 308
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.41 E-value=0.15 Score=57.38 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=87.5
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
.+|+|.+++ ++-++-..+-.+.| .-.+|.|.++ +=-+++|-.+-++-+.|+|. +++..+..
T Consensus 255 snLyl~~~~-e~~i~V~~~~~~pV--hdf~W~p~S~------~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe-------- 315 (561)
T COG5354 255 SNLYLLRIT-ERSIPVEKDLKDPV--HDFTWEPLSS------RFAVISGYMPASVSVFDLRG--NLRFYFPE-------- 315 (561)
T ss_pred ceEEEEeec-ccccceeccccccc--eeeeecccCC------ceeEEecccccceeeccccc--ceEEecCC--------
Confidence 468999987 56555554445555 3448888854 22477778999999999985 34433321
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECC---CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-----
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLD---GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT----- 482 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~D---GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~----- 482 (634)
+ ..+ .+.|+|.+ +|+.++.| |.|-+||..+.-....++.|.+ -.-++|||||+++.+ +.
T Consensus 316 --~---~rN----T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 316 --Q---KRN----TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred --c---ccc----cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccc
Confidence 1 111 23568887 78887766 6799999887322334666544 355789999999987 32
Q ss_pred -CCcEEEEEcc
Q 047036 483 -DTYLILICTL 492 (634)
Q Consensus 483 -D~tIrLWD~~ 492 (634)
|+.|.|||+.
T Consensus 385 ~Dn~i~l~~v~ 395 (561)
T COG5354 385 VDNSIKLWDVY 395 (561)
T ss_pred cCcceEEEEec
Confidence 8999999974
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.28 E-value=0.023 Score=59.26 Aligned_cols=94 Identities=16% Similarity=0.103 Sum_probs=62.1
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
..+.|++.--+.+..-+--.+.| +.++-.|. | .+++++|+.|+.|-+||+|....++..|..|..+
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v--~~l~~hp~----q---q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~----- 225 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAV--TALCSHPA----Q---QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE----- 225 (319)
T ss_pred ceeeecccccccccccccccccc--hhhhCCcc----c---ccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----
Confidence 47788875433222111112224 34566664 3 5799999999999999999765555555555443
Q ss_pred cccccccCcceEEEEECCC-C-eEEEEECCCcEEEEeccc
Q 047036 414 QGHQFSRGTNFQCFASTGD-G-SIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~d-G-~IASGS~DGtIRLWD~~t 451 (634)
+.-+.|.|. + +|.++|.||.+--||..+
T Consensus 226 ----------i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 226 ----------IWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 445667664 4 899999999999999653
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.37 Score=56.84 Aligned_cols=178 Identities=19% Similarity=0.177 Sum_probs=107.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r 453 (634)
+..++.|..+|.|++.+... .+ .+...|++ ..-+| ++||||.||+|-+-.+-+.+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~---------------------~~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSS---------------------SILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred cceeeeccccceEEEEecCC--cc-cccccccc---------------------cccCCceEEEecCCCcEEEeeccCCc
Confidence 46899999999999998753 11 22212211 13356 99999999999998876654
Q ss_pred cccccccCCCCCeEEEEECCC-----CCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccc
Q 047036 454 QAKTAFPGLGSPITHVDVTYD-----GKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHL 527 (634)
Q Consensus 454 ~akt~L~GH~d~ItsVdfSpD-----Gk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~ 527 (634)
..+++. ..-||.+|+++|| .+..++ ++.+ |.|..-. =++++++. .| . .
T Consensus 105 -~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~--------------wlgnk~~v--~l--~-----~ 158 (846)
T KOG2066|consen 105 -EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN--------------WLGNKDSV--VL--S-----E 158 (846)
T ss_pred -cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh--------------hhcCccce--ee--e-----c
Confidence 444443 5679999999999 344555 7777 7776522 12332221 11 1 1
Q ss_pred cCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCeeeeccccCcc
Q 047036 528 AGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKF 607 (634)
Q Consensus 528 ~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f 607 (634)
. .-.-...+|. | ..|+=+.|-.|.|+|...-.+ + =.|+.-...+....| .+.-
T Consensus 159 ~--eG~I~~i~W~-----g---~lIAWand~Gv~vyd~~~~~~--l--------------~~i~~p~~~~R~e~f-pphl 211 (846)
T KOG2066|consen 159 G--EGPIHSIKWR-----G---NLIAWANDDGVKVYDTPTRQR--L--------------TNIPPPSQSVRPELF-PPHL 211 (846)
T ss_pred C--ccceEEEEec-----C---cEEEEecCCCcEEEeccccce--e--------------eccCCCCCCCCcccC-CCce
Confidence 0 1111234443 3 466668888899999763221 1 135555555554555 3333
Q ss_pred ccCCCCCCCEEEEcCCceeeeecc
Q 047036 608 AVTDSPEAPLVVATPMKVSSISLS 631 (634)
Q Consensus 608 ~~~~~~~~~iivA~~~~v~~~~~~ 631 (634)
.+.+ +..+|+.=-+.|.-++|+
T Consensus 212 ~W~~--~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 212 HWQD--EDRLVIGWGDSVKICSIK 233 (846)
T ss_pred EecC--CCeEEEecCCeEEEEEEe
Confidence 4444 368888888888888776
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=0.27 Score=58.25 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=94.9
Q ss_pred eEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEE-EcCC-----cEEEEEcccccC
Q 047036 424 FQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILG-TTDT-----YLILICTLFSDK 496 (634)
Q Consensus 424 fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlS-S~D~-----tIrLWD~~~~~~ 496 (634)
++|+ .+..|.||.|+.||.|-+.+..- +..+-+.+|... |..|-...+-.+|+| +.|. +|++|+....+
T Consensus 28 isc~-~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~- 103 (933)
T KOG2114|consen 28 ISCC-SSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD- 103 (933)
T ss_pred eeEE-cCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC-
Confidence 4443 35556999999999999998532 244667777766 666766666678888 7653 69999976322
Q ss_pred CCCeeeeecCCCCCCCCCceeE---eecCCCccccCCCcccccccccccccCCCCceEEEEE-cCCeEEEEeChhhhccc
Q 047036 497 DGKTKTGFSGRMGNKIPAPRLL---KLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVAT-VGKFSVIWDFQQVKNSA 572 (634)
Q Consensus 497 ~G~~~~gF~gh~~~~~p~pr~L---~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtS-tg~~viiWdl~~v~~~~ 572 (634)
++. | |-++ ++.|.- .+.+-+|+.+=.+- .+-.+||.+ +++.|+.. =-.+++.+
T Consensus 104 ------------~n~-s-P~c~~~~ri~~~~-----np~~~~p~s~l~Vs---~~l~~Iv~Gf~nG~V~~~-~GDi~RDr 160 (933)
T KOG2114|consen 104 ------------KNN-S-PQCLYEHRIFTIK-----NPTNPSPASSLAVS---EDLKTIVCGFTNGLVICY-KGDILRDR 160 (933)
T ss_pred ------------CCC-C-cceeeeeeeeccC-----CCCCCCcceEEEEE---ccccEEEEEecCcEEEEE-cCcchhcc
Confidence 111 1 3333 544421 12223344332111 123566665 45554443 23333321
Q ss_pred ccccccccCCcceeeEEEeccCCCeeeeccccCccccCCCCCCCEEEEcCCceeeeeccCC
Q 047036 573 HECYRNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVTDSPEAPLVVATPMKVSSISLSGR 633 (634)
Q Consensus 573 ~~~y~~~~~~~~~~~Y~i~~~~~~i~~~~f~~d~f~~~~~~~~~iivA~~~~v~~~~~~~~ 633 (634)
|. -+.|..+. .+.|....| ..++-..+.|||+..|.+.+++||
T Consensus 161 --------gs--r~~~~~~~-~~pITgL~~-------~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 161 --------GS--RQDYSHRG-KEPITGLAL-------RSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred --------cc--ceeeeccC-CCCceeeEE-------ecCCceeEEEEecceeEEEEecCC
Confidence 11 23455444 578886665 222223489999999999999986
No 312
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=95.16 E-value=0.07 Score=57.34 Aligned_cols=119 Identities=12% Similarity=0.154 Sum_probs=77.9
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
.+-+=|.+|=++++-|.-=...+ .+ -++-|+ ..+|...+-|..|.+|++....= --.+..
T Consensus 30 rlviRd~~tlq~~qlf~cldki~--yi-eW~ads-------~~ilC~~yk~~~vqvwsl~Qpew-~ckIde--------- 89 (447)
T KOG4497|consen 30 RLVIRDSETLQLHQLFLCLDKIV--YI-EWKADS-------CHILCVAYKDPKVQVWSLVQPEW-YCKIDE--------- 89 (447)
T ss_pred EEEEeccchhhHHHHHHHHHHhh--he-eeeccc-------eeeeeeeeccceEEEEEeeccee-EEEecc---------
Confidence 46677777777666554433322 23 555552 23555667788999999875431 011211
Q ss_pred cccccccCcceEEEEECCCC-e-EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036 414 QGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG-~-IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
....+++++.||+| + |.+.+.|-.|.+|.+.+. ....++--...+.+++|+|||++.+-
T Consensus 90 ------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~~pK~~~kg~~f~~dg~f~ai 150 (447)
T KOG4497|consen 90 ------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLPHPKTNVKGYAFHPDGQFCAI 150 (447)
T ss_pred ------CCCcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEecccccCceeEEECCCCceeee
Confidence 12246788999999 4 667889999999998772 44556544445799999999998764
No 313
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.84 E-value=1.6 Score=49.17 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=94.5
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEecc-----CCCcceeEEEEecCCCCC---CCCCCCEEEEEeCC
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFE-----KDGTDITMRDITNDTKSS---QLDPSESTFLGLDD 384 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH-----~~~V~I~vvsfsPd~K~~---q~~~g~~laSGS~D 384 (634)
++.|++.|+.+.. +.|+++|.+|-++ .++.-. +...+ .|..-.||. .|.+|+.+++-|.
T Consensus 274 ~nsDGkrIvFq~~-------GdIylydP~td~l-ekldI~lpl~rk~k~~----k~~~pskyledfa~~~Gd~ia~VSR- 340 (668)
T COG4946 274 ANSDGKRIVFQNA-------GDIYLYDPETDSL-EKLDIGLPLDRKKKQP----KFVNPSKYLEDFAVVNGDYIALVSR- 340 (668)
T ss_pred cCCCCcEEEEecC-------CcEEEeCCCcCcc-eeeecCCccccccccc----cccCHHHhhhhhccCCCcEEEEEec-
Confidence 4667777665543 4599999998654 333321 11101 111112321 1234788888765
Q ss_pred CeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCC-cEEEEeccccccccccccCCC
Q 047036 385 NRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDG-KIRLYSKTSMRQAKTAFPGLG 463 (634)
Q Consensus 385 ~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DG-tIRLWD~~t~r~akt~L~GH~ 463 (634)
+.+++.++-.+ ..+|. +|... +...-+...+. .+|.|..|| .|-+||..++. ++...++++
T Consensus 341 GkaFi~~~~~~-~~iqv--~~~~~-------------VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg 402 (668)
T COG4946 341 GKAFIMRPWDG-YSIQV--GKKGG-------------VRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG 402 (668)
T ss_pred CcEEEECCCCC-eeEEc--CCCCc-------------eEEEEEccCCc-ceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence 56677776543 22322 22222 22232222333 689999999 89999999873 666555554
Q ss_pred CCeEEEEECCCCCEEEEEcC-CcEEEEEccccc------CCCCeeeeecCCC
Q 047036 464 SPITHVDVTYDGKWILGTTD-TYLILICTLFSD------KDGKTKTGFSGRM 508 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlSS~D-~tIrLWD~~~~~------~~G~~~~gF~gh~ 508 (634)
-|-+|.+||||+++|.+.| --|.++|+..++ ..-.++..|.=|-
T Consensus 403 -~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 403 -NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred -ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 6999999999999988665 346666654221 1233455666553
No 314
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.71 E-value=0.17 Score=46.76 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=45.1
Q ss_pred CCCC--eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 430 TGDG--SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 430 s~dG--~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
+.+| .|++||.|..||+|+-. .....++ -.+.|++|+-...+++..+...+||-+++
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEe
Confidence 4566 69999999999999953 3445554 35689999999988887778888888887
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.52 E-value=0.26 Score=57.36 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=80.7
Q ss_pred CcEEEEeCCC----C-cEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc----------
Q 047036 333 PGVQQLDIET----G-KIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG---------- 397 (634)
Q Consensus 333 ~TIrlWDleT----G-K~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~---------- 397 (634)
++|.+.|..+ | +++..+...... .-++++||+| ..+++|.-+++|-+.|++....
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGk-------ylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGK-------YFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCC-------EEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 5799999998 4 677776555442 2358999955 2566777899999999986332
Q ss_pred -eEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEecccc---------ccccccc-----cC
Q 047036 398 -IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSKTSM---------RQAKTAF-----PG 461 (634)
Q Consensus 398 -~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~~t~---------r~akt~L-----~G 461 (634)
++....- | .-+ ...+|+++|. ..|--.|..|--||+... ...+..+ +|
T Consensus 366 ~vvaevev----------G-----lGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 366 AVVAEPEL----------G-----LGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred eEEEeecc----------C-----CCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 1211110 0 111 2346788884 566789999999997641 0112223 24
Q ss_pred CCCCeEEEEECCCCCEEEE----EcCCcE
Q 047036 462 LGSPITHVDVTYDGKWILG----TTDTYL 486 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS----S~D~tI 486 (634)
|...-.+=.-.|||+||++ |.|.+|
T Consensus 430 h~~~~~g~t~~~dgk~l~~~nk~skdrfl 458 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLNKFSKDRFL 458 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcccccccccc
Confidence 4444344455899999998 446555
No 316
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.48 E-value=0.43 Score=53.40 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=71.1
Q ss_pred cEEEEeCCCCcE--EEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE--EEEEcCCCCceEEecccCCCCc
Q 047036 334 GVQQLDIETGKI--VTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL--CQWDMRDRSGIVQNMVKGDSPV 409 (634)
Q Consensus 334 TIrlWDleTGK~--V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI--klWD~R~~~~~Vq~l~gh~s~V 409 (634)
.|+++|+++|+. +-++.+|... -+|+||++ .++++...|+.. .+.|++.+.. ..|. +..
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~~-----P~fspDG~-------~l~f~~~rdg~~~iy~~dl~~~~~--~~Lt-~~~-- 281 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNGA-----PAFSPDGS-------KLAFSSSRDGSPDIYLMDLDGKNL--PRLT-NGF-- 281 (425)
T ss_pred eEEEEeccCCccceeeccCCccCC-----ccCCCCCC-------EEEEEECCCCCccEEEEcCCCCcc--eecc-cCC--
Confidence 599999999864 4456777642 38999954 467777777665 5557776542 2232 111
Q ss_pred cccccccccccCcceEEEEECCCC-eEEEEE-CCC--cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-C
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDG-SIVVGS-LDG--KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-D 483 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG-~IASGS-~DG--tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D 483 (634)
+.+ +.-.++||| +||-.| ..| .|-++|+.+......++.+-... .-.+||||++|+- +. +
T Consensus 282 -----gi~-------~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 282 -----GIN-------TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSG 347 (425)
T ss_pred -----ccc-------cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccC
Confidence 110 122458899 565444 334 56677776642112223322222 7789999999997 53 4
Q ss_pred Cc
Q 047036 484 TY 485 (634)
Q Consensus 484 ~t 485 (634)
+.
T Consensus 348 g~ 349 (425)
T COG0823 348 GQ 349 (425)
T ss_pred Cc
Confidence 44
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=2.9 Score=50.06 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=91.2
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCc-EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-----e
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGK-IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-----R 386 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-----t 386 (634)
.+..+-.|+.+..+ .++|=+.++. .++.|+.|..++ +..+-.... .+.|++-+.|. .
T Consensus 31 ~~s~~~~vvigt~~--------G~V~~Ln~s~~~~~~fqa~~~si-v~~L~~~~~--------~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 31 CSSSTGSVVIGTAD--------GRVVILNSSFQLIRGFQAYEQSI-VQFLYILNK--------QNFLFSVGEDEQGNPVL 93 (933)
T ss_pred EcCCCceEEEeecc--------ccEEEecccceeeehheecchhh-hhHhhcccC--------ceEEEEEeecCCCCceE
Confidence 34444556666654 3445455554 459999998762 122122221 25677666554 5
Q ss_pred EEEEEcCCC--CceEEecccCCCCcccccccccc-ccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc----ccccc
Q 047036 387 LCQWDMRDR--SGIVQNMVKGDSPVLHWTQGHQF-SRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR----QAKTA 458 (634)
Q Consensus 387 IklWD~R~~--~~~Vq~l~gh~s~V~~~~~g~~y-~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r----~akt~ 458 (634)
|++||+... +..-+.+..|. + ..+.+ ....+.++++.+.+- .||+|=.+|.|-++-..-.| +....
T Consensus 94 lkiw~lek~~~n~sP~c~~~~r--i----~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 94 LKIWDLEKVDKNNSPQCLYEHR--I----FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred EEEecccccCCCCCcceeeeee--e----eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee
Confidence 999998743 11001111110 0 01111 134567888998876 79999999999999643221 12222
Q ss_pred ccCCCCCeEEEEECCCCCEEE-EEcCCcEEEEEcc
Q 047036 459 FPGLGSPITHVDVTYDGKWIL-GTTDTYLILICTL 492 (634)
Q Consensus 459 L~GH~d~ItsVdfSpDGk~Ll-SS~D~tIrLWD~~ 492 (634)
.+ -.+|||+|+|-.||+-++ +.+-+.|+++.+.
T Consensus 168 ~~-~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 168 HR-GKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred cc-CCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 33 468999999999999843 3556678888864
No 318
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.17 E-value=1.7 Score=40.21 Aligned_cols=56 Identities=18% Similarity=0.383 Sum_probs=43.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecc
Q 047036 376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~ 450 (634)
..|+.||.|..||+++-. .++..+.. ...+++++....+++|-|-..|||-+|+..
T Consensus 16 ~eLlvGs~D~~IRvf~~~---e~~~Ei~e----------------~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---EIVAEITE----------------TDKVTSLCSLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred ceEEEecCCcEEEEEeCC---cEEEEEec----------------ccceEEEEEcCCCEEEEEecCCEEEEEeCc
Confidence 589999999999999853 34444431 223567777777899999999999999954
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.54 Score=51.84 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=61.6
Q ss_pred CcccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEE
Q 047036 300 KIGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTF 379 (634)
Q Consensus 300 ~~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~la 379 (634)
+++.+|+|... -+|...+-+ ++|+++|++|--++..+..|.- ++..+|.-+. .+.|+
T Consensus 196 IrdlafSp~~~-------GLl~~asl~------nkiki~dlet~~~vssy~a~~~---~wSC~wDlde-------~h~IY 252 (463)
T KOG1645|consen 196 IRDLAFSPFNE-------GLLGLASLG------NKIKIMDLETSCVVSSYIAYNQ---IWSCCWDLDE-------RHVIY 252 (463)
T ss_pred hhhhccCcccc-------ceeeeeccC------ceEEEEecccceeeeheeccCC---ceeeeeccCC-------cceeE
Confidence 47788888753 134455543 6899999999999999999953 4667888773 36899
Q ss_pred EEeCCCeEEEEEcCCCCceEEecc
Q 047036 380 LGLDDNRLCQWDMRDRSGIVQNMV 403 (634)
Q Consensus 380 SGS~D~tIklWD~R~~~~~Vq~l~ 403 (634)
.|...|.|.++|+|.....+..+.
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~ 276 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELV 276 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhh
Confidence 999999999999997655555554
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=93.98 E-value=0.26 Score=52.77 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=59.1
Q ss_pred ceEEEEECCCC-eEEEEECCCcEEEEeccccccc----cccccCCC------------CCeEEEEECCCC---CEEEEEc
Q 047036 423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQA----KTAFPGLG------------SPITHVDVTYDG---KWILGTT 482 (634)
Q Consensus 423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~a----kt~L~GH~------------d~ItsVdfSpDG---k~LlSS~ 482 (634)
.+++|-|..-| |||+|-.-|.|-||.....+-+ .+.|.+|. ..|..|.+-.++ .+|+++.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 47888898888 8999998999999997543211 23456665 345666655554 4789999
Q ss_pred CCcEEEEEcccccC----CCCeeeeecCCCC
Q 047036 483 DTYLILICTLFSDK----DGKTKTGFSGRMG 509 (634)
Q Consensus 483 D~tIrLWD~~~~~~----~G~~~~gF~gh~~ 509 (634)
|++|+||-+.-++. .+.+.-+|...++
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~ 138 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMG 138 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccC
Confidence 99999999875432 2333445555554
No 321
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.86 E-value=0.17 Score=57.39 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=59.3
Q ss_pred cceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----
Q 047036 307 PKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL---- 382 (634)
Q Consensus 307 P~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS---- 382 (634)
|.+.+++++.+++|+.++-.. .+ +.+-+||+.+-|+|.+++.-.. ++..|+|| |+.++|+.
T Consensus 313 pRN~~~fnp~g~ii~lAGFGN-L~--G~mEvwDv~n~K~i~~~~a~~t----t~~eW~Pd--------Ge~flTATTaPR 377 (566)
T KOG2315|consen 313 PRNTAFFNPHGNIILLAGFGN-LP--GDMEVWDVPNRKLIAKFKAANT----TVFEWSPD--------GEYFLTATTAPR 377 (566)
T ss_pred CccceEECCCCCEEEEeecCC-CC--CceEEEeccchhhccccccCCc----eEEEEcCC--------CcEEEEEecccc
Confidence 667889999999988887753 33 6799999999999999998764 46699999 67777665
Q ss_pred --CCCeEEEEEcCC
Q 047036 383 --DDNRLCQWDMRD 394 (634)
Q Consensus 383 --~D~tIklWD~R~ 394 (634)
-||.++||+.-.
T Consensus 378 lrvdNg~KiwhytG 391 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG 391 (566)
T ss_pred EEecCCeEEEEecC
Confidence 489999999863
No 322
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.62 E-value=0.16 Score=52.28 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=68.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEE-EEECCCC-eEEEEECCCcEEEEecccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQC-FASTGDG-SIVVGSLDGKIRLYSKTSM 452 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fss-va~s~dG-~IASGS~DGtIRLWD~~t~ 452 (634)
+..++.|+.+++|.+|.+...+. |...+- .....+.| +....++ +.-+|+.||.||.|+..-.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~-------~~d~~~--------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA-------HSDRVC--------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCccch-------HHHhhh--------cccccceeccccccccceeEEeccCCceeeeccccC
Confidence 46799999999999999864322 111110 01112233 3334455 5678999999999997653
Q ss_pred ccccccccCCC-CCeEEEEECCCCCEEEE---EcCCcEEEEEcc
Q 047036 453 RQAKTAFPGLG-SPITHVDVTYDGKWILG---TTDTYLILICTL 492 (634)
Q Consensus 453 r~akt~L~GH~-d~ItsVdfSpDGk~LlS---S~D~tIrLWD~~ 492 (634)
+ ..-..-+|+ .++..+.++.-++.|+. |+|..++.|++.
T Consensus 135 k-~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 K-VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred c-eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2 333445677 78888888888888875 689999999875
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.43 E-value=9 Score=47.62 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=85.2
Q ss_pred EEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE
Q 047036 312 LMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD 391 (634)
Q Consensus 312 L~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD 391 (634)
-+-.+.+-|+..... +.|.+-|++++...--=.. .++ |.+.++||| .+.++....+.+|-+.+
T Consensus 75 ~fl~d~~~i~v~~~~------G~iilvd~et~~~eivg~v-d~G--I~aaswS~D--------ee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 75 QFLADTNSICVITAL------GDIILVDPETLELEIVGNV-DNG--ISAASWSPD--------EELLALITGRQTLLFMT 137 (1265)
T ss_pred EEecccceEEEEecC------CcEEEEcccccceeeeeec-cCc--eEEEeecCC--------CcEEEEEeCCcEEEEEe
Confidence 344555554444332 4688889998764322222 233 456699999 67888888888887755
Q ss_pred c----CCCCceEEecccCCCCcc-cccc-ccccc----------------------cCcceEEEEECCCC-eEEE-----
Q 047036 392 M----RDRSGIVQNMVKGDSPVL-HWTQ-GHQFS----------------------RGTNFQCFASTGDG-SIVV----- 437 (634)
Q Consensus 392 ~----R~~~~~Vq~l~gh~s~V~-~~~~-g~~y~----------------------~~~~fssva~s~dG-~IAS----- 437 (634)
- -..+.+-+...+-+..|. .|-. ..|+. ....=+++.+-.|| ++|+
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 3 211111000000000000 0100 00110 01111347788899 7777
Q ss_pred EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE----EcCCcEEEEE
Q 047036 438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG----TTDTYLILIC 490 (634)
Q Consensus 438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS----S~D~tIrLWD 490 (634)
...-..||+||..+ .-..+.-| -...=.++++-|.|.+|++ +.|+.|.++.
T Consensus 218 ~~~~RkirV~drEg-~Lns~se~-~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 218 ETGTRKIRVYDREG-ALNSTSEP-VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred cCCceeEEEecccc-hhhcccCc-ccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 33448999999763 11111111 1111247899999999998 3467788886
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.42 E-value=0.053 Score=62.33 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=85.9
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCC--cEEEEEeccC---CCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEE
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETG--KIVTEWKFEK---DGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQW 390 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTG--K~V~~lkgH~---~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklW 390 (634)
|.+.|++| -|+ --++..+.+||+.++ -...++.... .++ .++++. ++ ..++.+|...+.|.+.
T Consensus 114 Dtn~LAag-ldk-hrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gq----ns~cwl-rd-----~klvlaGm~sr~~~if 181 (783)
T KOG1008|consen 114 DTNHLAAG-LDK-HRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQ----NSVCWL-RD-----TKLVLAGMTSRSVHIF 181 (783)
T ss_pred cHHHHHhh-hhh-hcccCCccceecccccCCCccccccccccccCc----cccccc-cC-----cchhhcccccchhhhh
Confidence 44555554 332 245678999999998 3333333222 222 233444 22 3588899999999999
Q ss_pred EcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-C-CeEEEEECCCcEEEEec-cccccccccccCCCC---
Q 047036 391 DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-D-GSIVVGSLDGKIRLYSK-TSMRQAKTAFPGLGS--- 464 (634)
Q Consensus 391 D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-d-G~IASGS~DGtIRLWD~-~t~r~akt~L~GH~d--- 464 (634)
|+|....-++.+. .+|+ +-+...| . +|+++-+ ||.|-+||. ....+....+..-..
T Consensus 182 dlRqs~~~~~svn------------Tk~v-----qG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~ 243 (783)
T KOG1008|consen 182 DLRQSLDSVSSVN------------TKYV-----QGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKP 243 (783)
T ss_pred hhhhhhhhhhhhh------------hhhc-----ccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcc
Confidence 9994321111110 1121 2233455 3 3777766 999999993 222222222322222
Q ss_pred -CeEEEEECCCCCEEEE--Ec-CCcEEEEEccc
Q 047036 465 -PITHVDVTYDGKWILG--TT-DTYLILICTLF 493 (634)
Q Consensus 465 -~ItsVdfSpDGk~LlS--S~-D~tIrLWD~~~ 493 (634)
.+..+++.|--.-+++ +. .+||+++|+..
T Consensus 244 ~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 244 KQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3899999998766665 44 48999999864
No 325
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.39 E-value=1.9 Score=46.32 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=74.2
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.|..||.++|+. +.|..+.... ++..+.. +.+|+++ +..++++|+..+.. +..+..-.
T Consensus 47 ~~i~r~~~~~g~~-~~~~~p~~~~--~~~~~d~---------~g~Lv~~--~~g~~~~~~~~~~~-~t~~~~~~------ 105 (307)
T COG3386 47 GRIHRLDPETGKK-RVFPSPGGFS--SGALIDA---------GGRLIAC--EHGVRLLDPDTGGK-ITLLAEPE------ 105 (307)
T ss_pred CeEEEecCCcCce-EEEECCCCcc--cceeecC---------CCeEEEE--ccccEEEeccCCce-eEEecccc------
Confidence 6899999988753 4444443321 2333333 2345543 34567778754432 22221100
Q ss_pred ccccccccCcceEEEEECCCCeEEEEECC------------CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-
Q 047036 413 TQGHQFSRGTNFQCFASTGDGSIVVGSLD------------GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL- 479 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG~IASGS~D------------GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll- 479 (634)
.++.. +.+.-+...++|.|..|... |.|..+|.. + .....+.+|-..-++|+|||||+.|.
T Consensus 106 -~~~~~---~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g-~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 106 -DGLPL---NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G-GVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred -CCCCc---CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C-CEEEeecCcEEecCceEECCCCCEEEE
Confidence 12211 23334455788887777665 334445542 3 24555666544458999999997765
Q ss_pred E-EcCCcEEEEEcc
Q 047036 480 G-TTDTYLILICTL 492 (634)
Q Consensus 480 S-S~D~tIrLWD~~ 492 (634)
+ |..+.|.-++.-
T Consensus 180 aDT~~~~i~r~~~d 193 (307)
T COG3386 180 ADTPANRIHRYDLD 193 (307)
T ss_pred EeCCCCeEEEEecC
Confidence 5 777888888753
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.13 E-value=1.5 Score=49.25 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=74.4
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
..-+|+|++..| +++...|. .-.|+++|+.++.. ..|. |..+++ +--+|+||++ .++|+
T Consensus 241 ~~P~fspDG~~l-------~f~~~rdg----~~~iy~~dl~~~~~-~~Lt-~~~gi~-~~Ps~spdG~-------~ivf~ 299 (425)
T COG0823 241 GAPAFSPDGSKL-------AFSSSRDG----SPDIYLMDLDGKNL-PRLT-NGFGIN-TSPSWSPDGS-------KIVFT 299 (425)
T ss_pred CCccCCCCCCEE-------EEEECCCC----CccEEEEcCCCCcc-eecc-cCCccc-cCccCCCCCC-------EEEEE
Confidence 455677776433 23333332 24699999997764 3343 333332 2347899943 24555
Q ss_pred EeCCCeEEE--EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC-CCc--EEEEecccccc
Q 047036 381 GLDDNRLCQ--WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL-DGK--IRLYSKTSMRQ 454 (634)
Q Consensus 381 GS~D~tIkl--WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~-DGt--IRLWD~~t~r~ 454 (634)
.+..+.-.+ .|+..+. ++.+.- . +-.+ ++-..+|+| +||..+. +|. |-+.|+.++.
T Consensus 300 Sdr~G~p~I~~~~~~g~~--~~riT~--------~-~~~~------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~- 361 (425)
T COG0823 300 SDRGGRPQIYLYDLEGSQ--VTRLTF--------S-GGGN------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG- 361 (425)
T ss_pred eCCCCCcceEEECCCCCc--eeEeec--------c-CCCC------cCccCCCCCCEEEEEeccCCceeeEEeccCCCC-
Confidence 444555444 4554332 222210 0 0001 133458999 6776654 455 6666665432
Q ss_pred ccccccCCCCCeEEEEECCCCCEEEE
Q 047036 455 AKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 455 akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
..+.| .++.-+.+-+++|||++|..
T Consensus 362 ~~~~l-t~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 362 KIRIL-TSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred cEEEc-cccccCCCCCcCCCCceEEE
Confidence 12222 24444567789999999986
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.93 E-value=0.53 Score=54.86 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=94.3
Q ss_pred eEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEE-EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEE
Q 047036 311 LLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT-EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQ 389 (634)
Q Consensus 311 mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~-~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIkl 389 (634)
.+.+.....|.++++- +.||++.-.+|+... +..| ..++ +++.+++++ ..++|.|+..+.|.+
T Consensus 39 Tc~dst~~~l~~GsS~------G~lyl~~R~~~~~~~~~~~~-~~~~-~~~~~vs~~--------e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSA------GSVYLYNRHTGEMRKLKNEG-ATGI-TCVRSVSSV--------EYLVAAGTASGRVSV 102 (726)
T ss_pred EEeecCCceEEEeccc------ceEEEEecCchhhhcccccC-ccce-EEEEEecch--------hHhhhhhcCCceEEe
Confidence 3444555566666664 789999988776543 2333 2232 467788887 468888999999988
Q ss_pred EEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc---cccccccccCCCCC
Q 047036 390 WDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS---MRQAKTAFPGLGSP 465 (634)
Q Consensus 390 WD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t---~r~akt~L~GH~d~ 465 (634)
.-+..+...-+.+..|. +-.++..++|++++++| ++.+|-.-|+|.+=-+.+ .......+-....+
T Consensus 103 ~ql~~~~p~~~~~~t~~----------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~ 172 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPC----------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE 172 (726)
T ss_pred ehhhccCCCcceeeccc----------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence 87765432212221111 11257789999999999 899999999998877655 11122233344578
Q ss_pred eEEEEECCCCCEEEEEcCCc
Q 047036 466 ITHVDVTYDGKWILGTTDTY 485 (634)
Q Consensus 466 ItsVdfSpDGk~LlSS~D~t 485 (634)
|.-|+... +..|+|++-..
T Consensus 173 IVQlD~~q-~~LLVStl~r~ 191 (726)
T KOG3621|consen 173 IVQLDYLQ-SYLLVSTLTRC 191 (726)
T ss_pred eEEeeccc-ceehHhhhhhh
Confidence 88888863 44455544433
No 328
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.53 E-value=0.27 Score=55.95 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=54.5
Q ss_pred EEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-Ec-----C------CcEEEEEcc
Q 047036 426 CFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TT-----D------TYLILICTL 492 (634)
Q Consensus 426 sva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-----D------~tIrLWD~~ 492 (634)
-+-+||-| ||++=..-| |-||-..... ....|. |. .|.-|+|||+.+||++ |. + ..|+|||++
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~-r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFD-RIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHH-HHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 35679999 788877755 5699876543 234454 54 3899999999999998 64 1 679999997
Q ss_pred cccCCCCeeeeecC
Q 047036 493 FSDKDGKTKTGFSG 506 (634)
Q Consensus 493 ~~~~~G~~~~gF~g 506 (634)
+|..+.+|.-
T Consensus 291 ----tG~lkrsF~~ 300 (698)
T KOG2314|consen 291 ----TGLLKRSFPV 300 (698)
T ss_pred ----ccchhcceec
Confidence 6888877764
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.22 E-value=0.3 Score=58.14 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=87.7
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCC-eEEEEE
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDN-RLCQWD 391 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~-tIklWD 391 (634)
+.++.+.|+.+.-. +.|+++++.+|.......+|...| + .+-|...+ +-+|.+.+... -.-+|+
T Consensus 1109 fs~~~~hL~vG~~~------Geik~~nv~sG~~e~s~ncH~Sav--T--~vePs~dg-----s~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1109 FSGGTNHLAVGSHA------GEIKIFNVSSGSMEESVNCHQSAV--T--LVEPSVDG-----STQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred eecCCceEEeeecc------ceEEEEEccCcccccccccccccc--c--cccccCCc-----ceeeeeccccCchHHHhc
Confidence 34555556666543 789999999999999999999865 2 44453221 12344444433 678999
Q ss_pred cCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC---CCCCeE
Q 047036 392 MRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG---LGSPIT 467 (634)
Q Consensus 392 ~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G---H~d~It 467 (634)
+..-...++++.+ -.|+-|+..- .-|.|..-....|||+++...+.+.|.+ ..-.=+
T Consensus 1174 ~~s~~~~~Hsf~e-------------------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE-------------------DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred cccccCccccccc-------------------cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 8753333333321 1345555443 2345555567889999987544444442 223336
Q ss_pred EEEECCCCCEEEEEcCCcEEEEEccc
Q 047036 468 HVDVTYDGKWILGTTDTYLILICTLF 493 (634)
Q Consensus 468 sVdfSpDGk~LlSS~D~tIrLWD~~~ 493 (634)
...|||+-+.|+- |+ .|||+++
T Consensus 1235 ~a~FsP~D~LIln--dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1235 LAHFSPCDTLILN--DG--VLWDVRI 1256 (1516)
T ss_pred ccccCCCcceEee--Cc--eeeeecc
Confidence 7889999888775 22 4799874
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.11 E-value=17 Score=40.45 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=34.6
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR 393 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R 393 (634)
.|++++.. |+.+.++.=..+.+ |.+ .|+.+ +.|+.-..|+++++.|+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~i-v~~-~wt~~---------e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRI-VGM-GWTDD---------EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCE-EEE-EECCC---------CeEEEEEcCCEEEEEeCC
Confidence 59999976 99988743222332 243 77764 678888899999999985
No 331
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=90.47 E-value=29 Score=42.93 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=27.7
Q ss_pred CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 462 LGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
...+|..|+|++++..+++ ++|++|.+|...
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 5579999999999998888 999999999854
No 332
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.20 E-value=0.68 Score=55.09 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=56.4
Q ss_pred ceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 423 NFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 423 ~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
..+++|+.|.. .||+|=.-|.|.+|...+.. ..+.-..|..+|..|+|||||..|++ -.-+.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 34668888888 68999999999999977632 33444469999999999999999999 677999999653
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.10 E-value=3.9 Score=46.16 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=65.9
Q ss_pred cceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 317 TNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 317 ~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
+.+|+..+. +.|.++|.++|++|++..... | .-+-|+++ +++++..+.+ ++.+.+-...
T Consensus 117 G~LL~~~~~-------~~i~~yDw~~~~~i~~i~v~~--v--k~V~Ws~~--------g~~val~t~~-~i~il~~~~~- 175 (443)
T PF04053_consen 117 GNLLGVKSS-------DFICFYDWETGKLIRRIDVSA--V--KYVIWSDD--------GELVALVTKD-SIYILKYNLE- 175 (443)
T ss_dssp SSSEEEEET-------TEEEEE-TTT--EEEEESS-E-----EEEEE-TT--------SSEEEEE-S--SEEEEEE-HH-
T ss_pred CcEEEEECC-------CCEEEEEhhHcceeeEEecCC--C--cEEEEECC--------CCEEEEEeCC-eEEEEEecch-
Confidence 666776655 369999999999999998664 2 23488988 6788887744 7777774321
Q ss_pred ceEEecccCCCCccccccccccccCcceEEEEECC-CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCC
Q 047036 397 GIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDG 475 (634)
Q Consensus 397 ~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDG 475 (634)
.+.... . .|- ...|..+ +. ...|-||-.++.+-||...+ + .+..+.|....|.++ +.-
T Consensus 176 -~~~~~~--~-------~g~----e~~f~~~--~E~~~~IkSg~W~~d~fiYtT~~-~-lkYl~~Ge~~~i~~l---d~~ 234 (443)
T PF04053_consen 176 -AVAAIP--E-------EGV----EDAFELI--HEISERIKSGCWVEDCFIYTTSN-H-LKYLVNGETGIIAHL---DKP 234 (443)
T ss_dssp -HHHHBT--T-------TB-----GGGEEEE--EEE-S--SEEEEETTEEEEE-TT-E-EEEEETTEEEEEEE----SS-
T ss_pred -hccccc--c-------cCc----hhceEEE--EEecceeEEEEEEcCEEEEEcCC-e-EEEEEcCCcceEEEc---CCc
Confidence 000000 0 010 0112211 22 34678888888899998665 4 666333433333333 333
Q ss_pred CEEEEEc--CCcEEEEE
Q 047036 476 KWILGTT--DTYLILIC 490 (634)
Q Consensus 476 k~LlSS~--D~tIrLWD 490 (634)
-||+.-. ++.|.+.|
T Consensus 235 ~yllgy~~~~~~ly~~D 251 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLID 251 (443)
T ss_dssp -EEEEEETTTTEEEEE-
T ss_pred eEEEEEEccCCEEEEEE
Confidence 5555522 35555555
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=0.99 Score=49.87 Aligned_cols=92 Identities=15% Similarity=0.030 Sum_probs=63.3
Q ss_pred EEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccc
Q 047036 335 VQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQ 414 (634)
Q Consensus 335 IrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~ 414 (634)
++..+..+-+.++-+-+|...+ .-++|+|.. ..++..++-+++|++.|+++. ++|+....|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~I--rdlafSp~~-------~GLl~~asl~nkiki~dlet~-~~vssy~a~--------- 235 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFI--RDLAFSPFN-------EGLLGLASLGNKIKIMDLETS-CVVSSYIAY--------- 235 (463)
T ss_pred eEEeccCCcchhhcccccchhh--hhhccCccc-------cceeeeeccCceEEEEecccc-eeeeheecc---------
Confidence 5566655555566666676654 345999972 238999999999999999985 445554322
Q ss_pred ccccccCcceEEEEECCCC--eEEEEECCCcEEEEecccc
Q 047036 415 GHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSKTSM 452 (634)
Q Consensus 415 g~~y~~~~~fssva~s~dG--~IASGS~DGtIRLWD~~t~ 452 (634)
..+.++|+.-+. +|..|-..|.|.+||++..
T Consensus 236 -------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 236 -------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred -------CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 223344554443 7999999999999997653
No 335
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.03 E-value=4 Score=44.43 Aligned_cols=108 Identities=12% Similarity=0.181 Sum_probs=62.0
Q ss_pred EEEEecCCCCCCCCCCCEEEEE-----eCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-
Q 047036 360 MRDITNDTKSSQLDPSESTFLG-----LDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG- 433 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSG-----S~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG- 433 (634)
..+++|+ ++.+|-+ +.-.+|++.|++++.-+...+. ...+..+++.++|
T Consensus 128 ~~~~Spd--------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----------------~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 128 GFSVSPD--------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----------------NPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEETTT--------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----------------EEESEEEEECTTSS
T ss_pred eeeECCC--------CCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----------------ccccceEEEeCCCC
Confidence 3478898 4555544 2335699999998743222221 1223447888887
Q ss_pred eEEEEECCC-----------cEEEEeccccc-cccccccCCCCC--eEEEEECCCCCEEEE--Ec--C-CcEEEEEcc
Q 047036 434 SIVVGSLDG-----------KIRLYSKTSMR-QAKTAFPGLGSP--ITHVDVTYDGKWILG--TT--D-TYLILICTL 492 (634)
Q Consensus 434 ~IASGS~DG-----------tIRLWD~~t~r-~akt~L~GH~d~--ItsVdfSpDGk~LlS--S~--D-~tIrLWD~~ 492 (634)
.|+-...+. .|++|.+-+.. .....+.+...+ ..++..|+||+||+. +. + +.|.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 344333332 48888876642 112344443333 679999999999875 33 3 446777764
No 336
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.81 E-value=13 Score=39.62 Aligned_cols=127 Identities=18% Similarity=0.147 Sum_probs=76.8
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVL 410 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~ 410 (634)
|++.+.--|..+|+++-+-. - +++|...++-- |++++.|...+.+.+.+..++.+ ++.+..
T Consensus 31 Hs~~~~avd~~sG~~~We~i--l-g~RiE~sa~vv---------gdfVV~GCy~g~lYfl~~~tGs~-~w~f~~------ 91 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAI--L-GVRIECSAIVV---------GDFVVLGCYSGGLYFLCVKTGSQ-IWNFVI------ 91 (354)
T ss_pred CCceEEEecCCCCcEEeehh--h-CceeeeeeEEE---------CCEEEEEEccCcEEEEEecchhh-eeeeee------
Confidence 56789999999999875421 1 11222222221 57899999999999999998754 233320
Q ss_pred ccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEEEcCCc
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILGTTDTY 485 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlSS~D~t 485 (634)
-..+..++.+-...|.|..||.|+....-|..+. .+...++--+..-.+=++.| +|..-+++.-+.
T Consensus 92 --------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 92 --------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred --------hhhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceeccceecCCCceEEEEeccce
Confidence 0123345555555669999999999999998773 35554442222222334444 555444443333
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.80 E-value=13 Score=44.56 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=48.7
Q ss_pred CcceEEEEECCCC-eEEEEECCCcEEEEecc-----c----cc---cccc------cc-cCCCCCeEEEEECCCC---CE
Q 047036 421 GTNFQCFASTGDG-SIVVGSLDGKIRLYSKT-----S----MR---QAKT------AF-PGLGSPITHVDVTYDG---KW 477 (634)
Q Consensus 421 ~~~fssva~s~dG-~IASGS~DGtIRLWD~~-----t----~r---~akt------~L-~GH~d~ItsVdfSpDG---k~ 477 (634)
.+.+..+..++.| +||..|..|.+-|.=.+ + ++ .|++ .+ ..++..|..+.|.|.+ ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3456778889999 68888776655432211 0 11 1111 11 2456789999999984 88
Q ss_pred EEE-EcCCcEEEEEcc
Q 047036 478 ILG-TTDTYLILICTL 492 (634)
Q Consensus 478 LlS-S~D~tIrLWD~~ 492 (634)
|+. +.|++||++|+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 988 999999999985
No 338
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=89.75 E-value=2.8 Score=49.74 Aligned_cols=157 Identities=14% Similarity=0.064 Sum_probs=99.9
Q ss_pred EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc--cccccccccCcceEEEEECCC---Ce
Q 047036 360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH--WTQGHQFSRGTNFQCFASTGD---GS 434 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~--~~~g~~y~~~~~fssva~s~d---G~ 434 (634)
.++++|. .+||-|| ...|.+.|.|+-+ .+|.+.-|.+.|+. |+.. ..++. -++|. -.
T Consensus 20 A~Dw~~~---------GLiAygs-hslV~VVDs~s~q-~iqsie~h~s~V~~VrWap~-----~~p~~--llS~~~~~ll 81 (1062)
T KOG1912|consen 20 AADWSPS---------GLIAYGS-HSLVSVVDSRSLQ-LIQSIELHQSAVTSVRWAPA-----PSPRD--LLSPSSSQLL 81 (1062)
T ss_pred ccccCcc---------ceEEEec-CceEEEEehhhhh-hhhccccCccceeEEEeccC-----CCchh--ccCcccccee
Confidence 3477774 4777776 5689999999864 46787766654421 2211 11111 12322 26
Q ss_pred EEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC---CCCE-EEE-EcCCcEEEEEcccccCCCCeeeeecCCCC
Q 047036 435 IVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY---DGKW-ILG-TTDTYLILICTLFSDKDGKTKTGFSGRMG 509 (634)
Q Consensus 435 IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp---DGk~-LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~~ 509 (634)
||+|-..|.|-|||.... ....-|..|.++|..|++=| |.+. |++ ..-++|.||++. +|+.. =.|..
T Consensus 82 iAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~---Wk~~y 153 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKF---WKYDY 153 (1062)
T ss_pred EEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCcee---ecccc
Confidence 899999999999998775 46677888999999988764 4534 556 889999999975 45532 22221
Q ss_pred CCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036 510 NKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 510 ~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
.|... -.|+.+-|+. ...++.+.+++|.+=++-
T Consensus 154 -------------s~~iL----s~f~~DPfd~-------rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 154 -------------SHEIL----SCFRVDPFDS-------RHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred -------------CCcce----eeeeeCCCCc-------ceEEEEccCceEEEEecc
Confidence 11111 1366666653 245666778888877764
No 339
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=88.36 E-value=11 Score=43.56 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=67.5
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV 437 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS 437 (634)
+.+.|||- |.+|+| -.-..|-+|--..-.. ++.+ .|. + +.-+.|||.. ||++
T Consensus 214 tyv~wSP~--------GTYL~t-~Hk~GI~lWGG~~f~r-~~RF------------~Hp---~--Vq~idfSP~EkYLVT 266 (698)
T KOG2314|consen 214 TYVRWSPK--------GTYLVT-FHKQGIALWGGESFDR-IQRF------------YHP---G--VQFIDFSPNEKYLVT 266 (698)
T ss_pred eeEEecCC--------ceEEEE-EeccceeeecCccHHH-HHhc------------cCC---C--ceeeecCCccceEEE
Confidence 35688886 556665 4455677886432111 1222 122 2 2334678877 8888
Q ss_pred EEC-----------CCcEEEEeccccccccccccC--CCCCeEE-EEECCCCCEEEEEcCCcEEEEEcc
Q 047036 438 GSL-----------DGKIRLYSKTSMRQAKTAFPG--LGSPITH-VDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 438 GS~-----------DGtIRLWD~~t~r~akt~L~G--H~d~Its-VdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
=|- -..|++||+.+|. .+..|+. -+.+++. +.+|.|++|+|.-.-++|.|+++.
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtp 334 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETP 334 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccc-hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecC
Confidence 662 2578999999985 7777775 3334443 689999999999333688888864
No 340
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=41 Score=36.87 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=94.5
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe--
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-- 382 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-- 382 (634)
+.|.+..+.....++.+...++ ++|.+.|+.+-+++....--... .-++++|++ ..++.+.
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~------~~v~vid~~~~~~~~~~~vG~~P---~~~~~~~~~--------~~vYV~n~~ 136 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDS------NTVSVIDTATNTVLGSIPVGLGP---VGLAVDPDG--------KYVYVANAG 136 (381)
T ss_pred ccccceeeCCCCCeEEEecCCC------CeEEEEcCcccceeeEeeeccCC---ceEEECCCC--------CEEEEEecc
Confidence 4556655544444455555443 58999999988888875433332 234899984 3444443
Q ss_pred -CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEE-ECCCcEEEEeccccccccc-c
Q 047036 383 -DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVG-SLDGKIRLYSKTSMRQAKT-A 458 (634)
Q Consensus 383 -~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASG-S~DGtIRLWD~~t~r~akt-~ 458 (634)
.++++-+.|..+.. +++++. ....+ .-++++|+| .++++ +.++.|-+.|..+.. ... .
T Consensus 137 ~~~~~vsvid~~t~~-~~~~~~---------------vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~ 198 (381)
T COG3391 137 NGNNTVSVIDAATNK-VTATIP---------------VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGS 198 (381)
T ss_pred cCCceEEEEeCCCCe-EEEEEe---------------cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccc
Confidence 37999999988754 333321 11123 457889998 45544 589999999976532 221 0
Q ss_pred ---ccCCCCCeEEEEECCCCCEEEEE--cC--CcEEEEEcc
Q 047036 459 ---FPGLGSPITHVDVTYDGKWILGT--TD--TYLILICTL 492 (634)
Q Consensus 459 ---L~GH~d~ItsVdfSpDGk~LlSS--~D--~tIrLWD~~ 492 (634)
.-+-+..-..+.++|||.++... .. +.+...|+.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 11223344789999999976553 33 578888865
No 341
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.29 E-value=45 Score=36.71 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=84.1
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc----cCCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV----KGDSP 408 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~----gh~s~ 408 (634)
.+|-+-|++.+|++.+..... |. -+-|.+ .+.+.+-+.||++....+...++..+... .-.++
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG-----C~-~iyP~~-------~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp 184 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG-----CW-LIYPSG-------NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP 184 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS-----EE-EEEEEE-------TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-
T ss_pred CeEEEEECCCCceeeeecCCC-----EE-EEEecC-------CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc
Confidence 589999999999999998765 33 334542 24688889999999888875554332211 00111
Q ss_pred ccccc-----ccccc--ccCcceE---------------------------------EEEECC-CCeEEEEE---CCC--
Q 047036 409 VLHWT-----QGHQF--SRGTNFQ---------------------------------CFASTG-DGSIVVGS---LDG-- 442 (634)
Q Consensus 409 V~~~~-----~g~~y--~~~~~fs---------------------------------sva~s~-dG~IASGS---~DG-- 442 (634)
+.... .++-| ...-++. .+|+.+ .++|.+-- .+|
T Consensus 185 ~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 185 LFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 11100 01000 0000111 122322 22322211 111
Q ss_pred -----cEEEEeccccccccccccCCCCCeEEEEECCCCCE-EEE-Ec-CCcEEEEEcccccCCCCeeeeec
Q 047036 443 -----KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKW-ILG-TT-DTYLILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 443 -----tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~-LlS-S~-D~tIrLWD~~~~~~~G~~~~gF~ 505 (634)
.|=+||+.+.+ .+..++ +..+|.+|.+|.|.+= |.+ +. +++|.++|+. +|+.+....
T Consensus 265 KdpgteVWv~D~~t~k-rv~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~----tGk~~~~~~ 329 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHK-RVARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA----TGKLVRSIE 329 (342)
T ss_dssp TS-EEEEEEEETTTTE-EEEEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETT----T--EEEEE-
T ss_pred cCCceEEEEEECCCCe-EEEEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc----CCcEEeehh
Confidence 45566777753 555565 3457899999999984 445 44 7899999986 677665444
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.99 E-value=32 Score=36.78 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=79.2
Q ss_pred EEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccccccc
Q 047036 337 QLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGH 416 (634)
Q Consensus 337 lWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~ 416 (634)
+|-+..+|+|.- . ++ -+.||.| .+++.||..+.+...|+.+++-.=..+
T Consensus 2 rW~vd~~kCVDa-----s----pL-VV~~dsk-------T~v~igSHs~~~~avd~~sG~~~We~i-------------- 50 (354)
T KOG4649|consen 2 RWAVDLRKCVDA-----S----PL-VVCNDSK-------TLVVIGSHSGIVIAVDPQSGNLIWEAI-------------- 50 (354)
T ss_pred ceeccchhhccC-----C----cE-EEecCCc-------eEEEEecCCceEEEecCCCCcEEeehh--------------
Confidence 577777787752 1 12 3456644 689999999999999999875211111
Q ss_pred ccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeE-EEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 417 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT-HVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 417 ~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It-sVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
...+|.|-|.--+.+++.|...|.+.+-+..++. ....+...+ .|. .-..-+||..|-. |.|+++...|.+
T Consensus 51 ---lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs-~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 51 ---LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGS-QIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ---hCceeeeeeEEECCEEEEEEccCcEEEEEecchh-heeeeeehh-hhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 1233433333234479999999999999988874 233333222 232 3455688999988 899999999876
No 343
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.90 E-value=1.7 Score=44.97 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=40.4
Q ss_pred CCeEEEEECCCcEEEEeccccccccccccCCCCC-eEEEEECCCCCEEEE-EcCCcEEEEEccc
Q 047036 432 DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSP-ITHVDVTYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 432 dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~-ItsVdfSpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
+-.+++|+.+|.|.+|.....-+.-.....--.+ ...|....++.+..+ +.|+.||.|.+.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 3379999999999999976311111122222223 345566666667766 7899999999863
No 344
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=4.9 Score=45.22 Aligned_cols=151 Identities=16% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCcccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHW 412 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~ 412 (634)
+.+|+.|++.-..+.-.+--.- +=.+..+.. |+... ..+.++.-.++.|.+.|.+...|.+.-..+
T Consensus 76 hs~KvfDvEn~DminmiKL~~l--Pg~a~wv~s--kGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-------- 141 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIKLVDL--PGFAEWVTS--KGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-------- 141 (558)
T ss_pred cceeEEEeeccchhhhcccccC--CCceEEecC--CCCee--eeEEeecccCCCcEEECCcCCcCccceecc--------
Confidence 6799999887655533322111 001111211 11110 124445556799999999987653211110
Q ss_pred ccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccc-cccccc-------------cccCCCCCeEEEEECCCCCE
Q 047036 413 TQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTS-MRQAKT-------------AFPGLGSPITHVDVTYDGKW 477 (634)
Q Consensus 413 ~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t-~r~akt-------------~L~GH~d~ItsVdfSpDGk~ 477 (634)
.+-.++.++-..+-| .++|.-..|.|.-|.... .+...+ -++-.....+++.|||+|..
T Consensus 142 ------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 142 ------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred ------cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 122345666667777 577777889999999763 111111 12234466789999999999
Q ss_pred EEE-EcCCcEEEEEcccccCCCCeeeeecCC
Q 047036 478 ILG-TTDTYLILICTLFSDKDGKTKTGFSGR 507 (634)
Q Consensus 478 LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh 507 (634)
|.+ +.|..||+.+.+ .|+.++.+.-.
T Consensus 216 istl~~DrkVR~F~~K----tGklvqeiDE~ 242 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFK----TGKLVQEIDEV 242 (558)
T ss_pred ccccCcccEEEEEEec----cchhhhhhhcc
Confidence 999 999999999986 67777766543
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.61 E-value=6.9 Score=44.32 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=69.3
Q ss_pred eEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe----------------
Q 047036 319 MMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL---------------- 382 (634)
Q Consensus 319 mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS---------------- 382 (634)
+++.+..+ +.|+..|+++|+++-+....... + +.+| ..++.++
T Consensus 303 ~V~~g~~~------G~l~ald~~tG~~~W~~~~~~~~----~-~~~~----------~~vyv~~~~~~~~~~~~~~~~~~ 361 (488)
T cd00216 303 AIVHAPKN------GFFYVLDRTTGKLISARPEVEQP----M-AYDP----------GLVYLGAFHIPLGLPPQKKKRCK 361 (488)
T ss_pred EEEEECCC------ceEEEEECCCCcEeeEeEeeccc----c-ccCC----------ceEEEccccccccCcccccCCCC
Confidence 45555443 68999999999998776432111 1 2233 2333332
Q ss_pred --CCCeEEEEEcCCCCceEEecc--cCCCCccccccccccccCcce-EEEEECCCCeEEEEECCCcEEEEeccccccccc
Q 047036 383 --DDNRLCQWDMRDRSGIVQNMV--KGDSPVLHWTQGHQFSRGTNF-QCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 383 --~D~tIklWD~R~~~~~Vq~l~--gh~s~V~~~~~g~~y~~~~~f-ssva~s~dG~IASGS~DGtIRLWD~~t~r~akt 457 (634)
.++.|.-.|+++++. +-... .+... |..+ ...+ ..++ ..++.|++|+.||.|+.+|..+++ .+-
T Consensus 362 ~~~~G~l~AlD~~tG~~-~W~~~~~~~~~~---~~~g-----~~~~~~~~~-~~g~~v~~g~~dG~l~ald~~tG~-~lW 430 (488)
T cd00216 362 KPGKGGLAALDPKTGKV-VWEKREGTIRDS---WNIG-----FPHWGGSLA-TAGNLVFAGAADGYFRAFDATTGK-ELW 430 (488)
T ss_pred CCCceEEEEEeCCCCcE-eeEeeCCccccc---cccC-----CcccCcceE-ecCCeEEEECCCCeEEEEECCCCc-eee
Confidence 356788888887642 21111 00000 0000 0001 1222 234689999999999999998885 333
Q ss_pred cccCCCCCeEE--EEECCCCCEEEEEcC
Q 047036 458 AFPGLGSPITH--VDVTYDGKWILGTTD 483 (634)
Q Consensus 458 ~L~GH~d~Its--VdfSpDGk~LlSS~D 483 (634)
.++ .+.+|.+ +.+..+|+..+.+.+
T Consensus 431 ~~~-~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 431 KFR-TPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred EEE-CCCCceEcCEEEEeCCEEEEEEEe
Confidence 332 2233332 334456765554443
No 346
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=87.56 E-value=42 Score=35.90 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=63.2
Q ss_pred EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECC-----C-C
Q 047036 360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTG-----D-G 433 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~-----d-G 433 (634)
-++|||| +.+||.+.+-++|++.|+-... +-.+....+... + ....+..++|.+ . .
T Consensus 48 kl~WSpD--------~tlLa~a~S~G~i~vfdl~g~~--lf~I~p~~~~~~------d--~~~Aiagl~Fl~~~~s~~ws 109 (282)
T PF15492_consen 48 KLAWSPD--------CTLLAYAESTGTIRVFDLMGSE--LFVIPPAMSFPG------D--LSDAIAGLIFLEYKKSAQWS 109 (282)
T ss_pred EEEECCC--------CcEEEEEcCCCeEEEEecccce--eEEcCcccccCC------c--cccceeeeEeeccccccccc
Confidence 3599999 6899999999999999987422 233432111110 1 112233333322 1 2
Q ss_pred -eEEEEECCCcEEEEeccccc----ccccc--cc-CCCCCeEEEEECCCCCEEEE-Ec
Q 047036 434 -SIVVGSLDGKIRLYSKTSMR----QAKTA--FP-GLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 434 -~IASGS~DGtIRLWD~~t~r----~akt~--L~-GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
.|.+=..+|.+|=|=+..++ +.... |. .+...|.++.+.|.=+.|+. +|
T Consensus 110 ~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~ 167 (282)
T PF15492_consen 110 YELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGC 167 (282)
T ss_pred eeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEecc
Confidence 36777788888888763221 11122 22 34668999999999887765 54
No 347
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=1.6 Score=50.58 Aligned_cols=70 Identities=17% Similarity=0.058 Sum_probs=54.5
Q ss_pred EECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeE-EEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeee
Q 047036 428 ASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPIT-HVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTG 503 (634)
Q Consensus 428 a~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~It-sVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~g 503 (634)
-.+|.- .||.+..+|.|-|.-..- +..-++|-|+.+++ ++++-|||+.||. =.|++|+|.|+. +|..+..
T Consensus 27 ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve----~~~~l~~ 99 (665)
T KOG4640|consen 27 EWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE----KGGRLVS 99 (665)
T ss_pred EEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc----CCCceec
Confidence 445554 788888899888877653 24566777888888 9999999999998 679999999986 5655555
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.13 E-value=8 Score=48.06 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=86.8
Q ss_pred eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEccc-------c
Q 047036 424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLF-------S 494 (634)
Q Consensus 424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~-------~ 494 (634)
+.++-|-.++ .|.++...|+|-|=|+.++ ......--.+.|.+.++|||+++++- |.+.+|.+..-.+ -
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 3445555555 7888889999999997764 22222234567999999999999987 8888888875311 0
Q ss_pred c------------CCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEE----EcC-
Q 047036 495 D------------KDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVA----TVG- 557 (634)
Q Consensus 495 ~------------~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~Ivt----Stg- 557 (634)
+ +-|+.-+.|.|.-|..++.......+... +....=.+-..+| .|+| +...|+ -+|
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~----~~~~~~~~~~IsW-RgDg--~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALE----QIEQDDHKTSISW-RGDG--EYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhccccccccccccc----chhhccCCceEEE-ccCC--cEEEEEEEeccCCc
Confidence 0 11333334555444221211111111000 0001111222344 3333 555443 357
Q ss_pred CeEEEEeChhhhcccccccccccCCcceeeEE
Q 047036 558 KFSVIWDFQQVKNSAHECYRNQQGLKSCYCYK 589 (634)
Q Consensus 558 ~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~ 589 (634)
+.+.|||-+..|+..-.+ ++|+..|...+
T Consensus 222 RkirV~drEg~Lns~se~---~~~l~~~LsWk 250 (1265)
T KOG1920|consen 222 RKIRVYDREGALNSTSEP---VEGLQHSLSWK 250 (1265)
T ss_pred eeEEEecccchhhcccCc---ccccccceeec
Confidence 889999999888755543 57777776554
No 349
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=87.10 E-value=0.83 Score=51.67 Aligned_cols=78 Identities=10% Similarity=0.172 Sum_probs=54.2
Q ss_pred ceEEEEECCCCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE-EcCC---------------cE
Q 047036 423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDT---------------YL 486 (634)
Q Consensus 423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~---------------tI 486 (634)
+...+++||.|..+....-.-|.+|+....- ....++ |. -|.-++|||.|+||++ +... .+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAGVECWGGPSKA-KLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred chhheeecCcchheehhhccceEEccccchh-heeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 4566788999954444445678999976542 223343 43 5899999999999998 6533 48
Q ss_pred EEEEcccccCCCCeeeeecCC
Q 047036 487 ILICTLFSDKDGKTKTGFSGR 507 (634)
Q Consensus 487 rLWD~~~~~~~G~~~~gF~gh 507 (634)
.+||+. .|..+.+|.+.
T Consensus 111 ~vwd~~----sg~iv~sf~~~ 127 (561)
T COG5354 111 FVWDIA----SGMIVFSFNGI 127 (561)
T ss_pred eEEecc----CceeEeecccc
Confidence 999986 57777777654
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.72 E-value=11 Score=42.47 Aligned_cols=138 Identities=12% Similarity=0.041 Sum_probs=68.5
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD 384 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D 384 (634)
+-|.. |-|++.+++++.+++ +.-.+......+.... |... .. .|.+. ...|+--..
T Consensus 33 ~~p~~-ls~npngr~v~V~g~-------geY~iyt~~~~r~k~~--G~g~----~~-vw~~~---------n~yAv~~~~ 88 (443)
T PF04053_consen 33 IYPQS-LSHNPNGRFVLVCGD-------GEYEIYTALAWRNKAF--GSGL----SF-VWSSR---------NRYAVLESS 88 (443)
T ss_dssp S--SE-EEE-TTSSEEEEEET-------TEEEEEETTTTEEEEE--EE-S----EE-EE-TS---------SEEEEE-TT
T ss_pred cCCee-EEECCCCCEEEEEcC-------CEEEEEEccCCccccc--Ccee----EE-EEecC---------ccEEEEECC
Confidence 34554 557778888777655 3455555333333332 3332 22 56664 234554557
Q ss_pred CeEEEE-EcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCC
Q 047036 385 NRLCQW-DMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGL 462 (634)
Q Consensus 385 ~tIklW-D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH 462 (634)
++|++. +..... +..+ .....+..+. + | .|++.+.+ .|.+||+.+++ ....+.-
T Consensus 89 ~~I~I~kn~~~~~--~k~i----------------~~~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v- 144 (443)
T PF04053_consen 89 STIKIYKNFKNEV--VKSI----------------KLPFSVEKIF--G-GNLLGVKSSD-FICFYDWETGK-LIRRIDV- 144 (443)
T ss_dssp S-EEEEETTEE-T--T---------------------SS-EEEEE----SSSEEEEETT-EEEEE-TTT---EEEEESS-
T ss_pred CeEEEEEcCcccc--ceEE----------------cCCcccceEE--c-CcEEEEECCC-CEEEEEhhHcc-eeeEEec-
Confidence 777775 332111 0111 0111122222 2 6 45555544 89999999864 6666652
Q ss_pred CCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036 463 GSPITHVDVTYDGKWILGTTDTYLILICT 491 (634)
Q Consensus 463 ~d~ItsVdfSpDGk~LlSS~D~tIrLWD~ 491 (634)
.+|..|-+|++|.+++-.++.++.|++-
T Consensus 145 -~~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 145 -SAVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp --E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred -CCCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 2499999999999999877888888874
No 351
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=0.73 Score=51.52 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=57.2
Q ss_pred cccCcceEEEEECCCCeEEEEECCCcEEEEecccc--ccccccccCCCCCeEEEEECCCCCEEEE-Ec-CCcEEEEEcc
Q 047036 418 FSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSM--RQAKTAFPGLGSPITHVDVTYDGKWILG-TT-DTYLILICTL 492 (634)
Q Consensus 418 y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~--r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~-D~tIrLWD~~ 492 (634)
|.+.-.++.++.+...++.+||.||-+|.|-.... -.....+..|-..|.+|++|.||....| +. |..++++|+.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 33444455555566678999999999999985431 1233456689999999999999988888 66 8999999976
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.46 E-value=50 Score=36.25 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT 413 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~ 413 (634)
++..-+............-. ..+ .-+++++++ ....+....+++|.+.|..+... ++.+. +
T Consensus 54 ~~~~~~~~~n~~~~~~~~g~-~~p-~~i~v~~~~-------~~vyv~~~~~~~v~vid~~~~~~-~~~~~-----v---- 114 (381)
T COG3391 54 DVSVIDATSNTVTQSLSVGG-VYP-AGVAVNPAG-------NKVYVTTGDSNTVSVIDTATNTV-LGSIP-----V---- 114 (381)
T ss_pred eeeecccccceeeeeccCCC-ccc-cceeeCCCC-------CeEEEecCCCCeEEEEcCcccce-eeEee-----e----
Confidence 46666666333333222221 111 123667762 23566666789999999776543 23321 0
Q ss_pred cccccccCcceEEEEECCCC-eEEEEEC---CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE--EcCCcEE
Q 047036 414 QGHQFSRGTNFQCFASTGDG-SIVVGSL---DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG--TTDTYLI 487 (634)
Q Consensus 414 ~g~~y~~~~~fssva~s~dG-~IASGS~---DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS--S~D~tIr 487 (634)
|. .-..+++++++ .+.++.. +++|-+.|..+.+ ....++-=..| ..++|+|+|..+.. +.+++|.
T Consensus 115 -G~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~ 185 (381)
T COG3391 115 -GL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS 185 (381)
T ss_pred -cc------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence 11 12356778887 6655544 7999999988764 33334422245 99999999997765 5699999
Q ss_pred EEEcccccCCCCeeee-ecCCCCCCCCCceeEeecCCCc
Q 047036 488 LICTLFSDKDGKTKTG-FSGRMGNKIPAPRLLKLTPLDS 525 (634)
Q Consensus 488 LWD~~~~~~~G~~~~g-F~gh~~~~~p~pr~L~L~Pe~~ 525 (634)
++|+. +..+.. ..+..-...+.|+.+.+.|...
T Consensus 186 vi~~~-----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~ 219 (381)
T COG3391 186 VIDTS-----GNSVVRGSVGSLVGVGTGPAGIAVDPDGN 219 (381)
T ss_pred EEeCC-----CcceeccccccccccCCCCceEEECCCCC
Confidence 99954 222221 1110112234566677766654
No 353
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.84 E-value=14 Score=42.46 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=20.2
Q ss_pred CCCCeEEEEECCCcEEEEeccccc
Q 047036 430 TGDGSIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 430 s~dG~IASGS~DGtIRLWD~~t~r 453 (634)
+.++.+++|+.||.++.+|..+++
T Consensus 470 t~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 470 TAGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred ECCcEEEEECCCCeEEEEECCCCC
Confidence 455677789999999999999985
No 354
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=1.3 Score=54.12 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=66.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r 453 (634)
+-.++.|++.+-|-.-|.+.- + .-+ | |.. ....+++|+||+.+| .++.|=.+|-|.+||....+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--L-~~~--~------~ne----~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k 163 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--L-GPL--H------QNE----RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK 163 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--c-chh--h------cCC----ccCCcceeeEecCCCceeccccCCCcEEEEEccCCc
Confidence 346889999999988888642 1 101 1 111 134578999999999 67888999999999987643
Q ss_pred cccccccCCCCCeEE---EEECCCCCEEEEEcCCcEEEEEccc
Q 047036 454 QAKTAFPGLGSPITH---VDVTYDGKWILGTTDTYLILICTLF 493 (634)
Q Consensus 454 ~akt~L~GH~d~Its---VdfSpDGk~LlSS~D~tIrLWD~~~ 493 (634)
..+.|.-|+.|.++ +..+.++..+++ .|+-=.+|...+
T Consensus 164 -~l~~i~e~~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 164 -ILKVITEHGAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKLVF 204 (1206)
T ss_pred -ceeeeeecCCccceEEEEEEeCCCcEEEE-ccCCCceEEEEe
Confidence 55666667766555 455566664444 333333676543
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.72 E-value=29 Score=35.28 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=43.2
Q ss_pred CCeEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 432 DGSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 432 dG~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
+.+|++|..+| |.+|+....... +.+. +..+|..|.+-|+=+.|+.=+|++|.++++.
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~-~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~ 64 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKP-TRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLD 64 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccc-eeEe-ecceEEEEEEecccCEEEEEcCCccEEEEch
Confidence 34899999999 899998322212 2222 2334999999999999999667999999975
No 356
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.66 E-value=11 Score=38.67 Aligned_cols=61 Identities=10% Similarity=0.237 Sum_probs=41.8
Q ss_pred EECCCCeEEEEECCCcEEEEecccc-ccccccccCCCCCeEEEEECCCCCEEEE--E--cCC---cEEEE
Q 047036 428 ASTGDGSIVVGSLDGKIRLYSKTSM-RQAKTAFPGLGSPITHVDVTYDGKWILG--T--TDT---YLILI 489 (634)
Q Consensus 428 a~s~dG~IASGS~DGtIRLWD~~t~-r~akt~L~GH~d~ItsVdfSpDGk~LlS--S--~D~---tIrLW 489 (634)
+..+.+.|.++..-+.|.+|++.+. -+...+|+-. +.|..+..+.-|.|||+ . ... ++|++
T Consensus 24 c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 24 CCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred eccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 3444344444455678999998731 1244567654 78999999999999998 2 234 77886
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.33 E-value=27 Score=39.54 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=37.0
Q ss_pred CCCcEEEEeCCCCcEEEEEec-cCCCc--ce-eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 331 QAPGVQQLDIETGKIVTEWKF-EKDGT--DI-TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkg-H~~~V--~I-~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
++++|+-.|++||+++-+++. +.+.. .. ....+.+-...... +...++.|+.++.|...|+++++
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~-~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK-PVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC-eeEEEEEECCCceEEEEECCCCc
Confidence 345899999999999877642 21100 00 00011110000000 01268889999999999999875
No 358
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.72 E-value=4.6 Score=47.68 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=86.1
Q ss_pred EeCCcceEEecCCCCCCCCCCcEEEEeCCCCc---------------EEEEEeccCCCcceeEEEEecCCCCCCCCCCCE
Q 047036 313 MRGETNMMLMSPLKDGKPQAPGVQQLDIETGK---------------IVTEWKFEKDGTDITMRDITNDTKSSQLDPSES 377 (634)
Q Consensus 313 ~~~D~~mllsss~d~~~~~~~TIrlWDleTGK---------------~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~ 377 (634)
++.++..|..++.| +.+++.-+.|-. +-+++.||...| -++.++-. .+.
T Consensus 22 WNke~gyIAcgG~d------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV--~vvTWNe~--------~QK 85 (1189)
T KOG2041|consen 22 WNKESGYIACGGAD------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASV--MVVTWNEN--------NQK 85 (1189)
T ss_pred EcccCCeEEecccc------ceeEEEEccccCCcccccccccccccchhhhhccCcceE--EEEEeccc--------ccc
Confidence 45677778888776 678877665431 235789999987 47788765 355
Q ss_pred EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEEC----------CCCeEEEEECCCcEEEE
Q 047036 378 TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFAST----------GDGSIVVGSLDGKIRLY 447 (634)
Q Consensus 378 laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s----------~dG~IASGS~DGtIRLW 447 (634)
|-|.-.+|-|.+|=+-.+.= ...+... ..+..+.+++.+ .||-|++||.||. |+|
T Consensus 86 LTtSDt~GlIiVWmlykgsW-~EEMiNn-------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIw 150 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSW-CEEMINN-------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIW 150 (1189)
T ss_pred ccccCCCceEEEEeeecccH-HHHHhhC-------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eec
Confidence 66667789999998754310 0001000 001112223333 4566677777776 777
Q ss_pred eccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 448 SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 448 D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
.. ..+-++ ..+|-+|+|-+.++. -..+-+.|+|.+
T Consensus 151 gK----eLkg~~------l~hv~ws~D~~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 151 GK----ELKGQL------LAHVLWSEDLEQALFKKANGETHLYDNQ 186 (1189)
T ss_pred ch----hcchhe------ccceeecccHHHHHhhhcCCcEEEeccc
Confidence 62 222222 247899999999888 667888899853
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.70 E-value=2.1 Score=52.27 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=52.5
Q ss_pred eEEEEECCCcEEEEeccccccccccc--cCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeeeeecCCC
Q 047036 434 SIVVGSLDGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKTGFSGRM 508 (634)
Q Consensus 434 ~IASGS~DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF~gh~ 508 (634)
.||.|+.-|.|-+.|..+ + ..... ..-+.||++|+|+.||+.+++ =.+|-|.+||+. .++.++.|.-|.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~-n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTG-N-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eEEEEcCchhhhhhhhhc-c-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 689999999999999765 1 22211 124579999999999999999 579999999975 566666666443
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=83.01 E-value=14 Score=43.23 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 462 LGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
+...|.++.+||||+.||-..++.|.+--
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~~g~v~Va~ 474 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMIIGGKVYLAV 474 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEECCEEEEEE
Confidence 45579999999999999985567666643
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=82.41 E-value=63 Score=34.13 Aligned_cols=132 Identities=13% Similarity=0.190 Sum_probs=72.9
Q ss_pred CcEEEEeCCCCc-EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 333 PGVQQLDIETGK-IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK-~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++|+++++...+ ++..-.-+... .++++... ++.++.|-.-+.|.++-.+.....+..+.
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~---~i~sl~~~--------~~~I~vgD~~~sv~~~~~~~~~~~l~~va-------- 167 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPF---YITSLSVF--------KNYILVGDAMKSVSLLRYDEENNKLILVA-------- 167 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSS---SEEEEEEE--------TTEEEEEESSSSEEEEEEETTTE-EEEEE--------
T ss_pred CEEEEEEccCcccchhhheecceE---EEEEEecc--------ccEEEEEEcccCEEEEEEEccCCEEEEEE--------
Confidence 479999999888 65543333322 34455554 46899998888888774333222122222
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc------c--ccc--ccccCCCCCeEEE---EECC--CC
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM------R--QAK--TAFPGLGSPITHV---DVTY--DG 475 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~------r--~ak--t~L~GH~d~ItsV---dfSp--DG 475 (634)
.++. ...++++++-.++ .++++..+|.|.++..... + ... ..+ -+++.|+++ ++.| .+
T Consensus 168 ----~d~~-~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~~~~~ 241 (321)
T PF03178_consen 168 ----RDYQ-PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIPRSGS 241 (321)
T ss_dssp ----EESS--BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS--SSS
T ss_pred ----ecCC-CccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeeecCCC
Confidence 1111 2234566665344 8999999999999986520 0 011 111 367889998 7777 23
Q ss_pred C------EEE-EEcCCcEEEE
Q 047036 476 K------WIL-GTTDTYLILI 489 (634)
Q Consensus 476 k------~Ll-SS~D~tIrLW 489 (634)
. .|+ +|.+|.|-..
T Consensus 242 ~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 242 SESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S-TTEEEEEEEEETTS-EEEE
T ss_pred CcccccceEEEEecCCEEEEE
Confidence 3 244 4889998744
No 362
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=82.22 E-value=12 Score=33.85 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=60.2
Q ss_pred eeEEEEecCCCCCceEEee-ccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecc---e--eeeeeccccCc
Q 047036 74 VKLYLHIGGNTPKAKWVIS-DKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGS---K--VRAKVSTEMQL 147 (634)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~---~--~~~~v~~~~~~ 147 (634)
+.||.+ .....+|+.+ .-.....|++- . ..-.|||....- + +.+.|.++|.+
T Consensus 9 a~v~~~---~~~~~~W~~~~~~~g~v~~~~d-----------------~--~~~~y~i~~~~~~~~~vv~~~~l~~~~~y 66 (104)
T cd00837 9 AQVYTA---DPSTGKWVPASGGTGAVSLVKD-----------------S--TRNTYRIRGVDIQDQKVIWNQEIYKGLKY 66 (104)
T ss_pred EEEEEE---CCCCCceEECCCCeEEEEEEEE-----------------C--CCCEEEEEEEecCCCeEEEEEEecCCcEE
Confidence 667766 2226799998 56677888882 1 122478777432 2 78889887766
Q ss_pred ccccccceEEEE-e---CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036 148 KMFGDQRRIDFV-D---KGVWALKFFSDSEYRKFVTEFQDRL 185 (634)
Q Consensus 148 ~~~~~~~~~~f~-~---~~~w~lkF~~~~~~~~F~~~~~~~l 185 (634)
. +.+-.|. | ++.+-|.|.+.++-.+|..+.++|+
T Consensus 67 ~----~~~~~Fh~w~~~~~~~GL~F~se~eA~~F~~~v~~~~ 104 (104)
T cd00837 67 T----QATPFFHQWEDDNCVYGLNFASEEEAAQFRKKVLEAI 104 (104)
T ss_pred e----ecCCeEEEEEcCCcEEEEeeCCHHHHHHHHHHHHhcC
Confidence 4 3333333 3 3599999999999999999998874
No 363
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.85 E-value=3.9 Score=48.27 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=56.7
Q ss_pred CcceEEEEECCC-CeEEEEECCCcEEEEecccc----c----------cccccccCCCCCeEEEEECCCCCEEEE-EcCC
Q 047036 421 GTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSM----R----------QAKTAFPGLGSPITHVDVTYDGKWILG-TTDT 484 (634)
Q Consensus 421 ~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~----r----------~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~ 484 (634)
+++..|++.+.. |+||.|+.||.+++--+.+- + ..-++|.||...|.-|.++-+.+-|-+ -+++
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456788888764 69999999999999865431 0 012478899999999999999888877 5789
Q ss_pred cEEEEEcc
Q 047036 485 YLILICTL 492 (634)
Q Consensus 485 tIrLWD~~ 492 (634)
-|++|=+.
T Consensus 94 lIiVWmly 101 (1189)
T KOG2041|consen 94 LIIVWMLY 101 (1189)
T ss_pred eEEEEeee
Confidence 99999753
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.67 E-value=9.3 Score=45.07 Aligned_cols=109 Identities=7% Similarity=0.144 Sum_probs=70.5
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEE
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV 437 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS 437 (634)
...+++-. +..|+.|++-|.|+++.--.+.- +.+. .+ + .. -..++.+.+++. ++|.
T Consensus 37 ~lTc~dst--------~~~l~~GsS~G~lyl~~R~~~~~--~~~~--~~-------~---~~-~~~~~~~vs~~e~lvAa 93 (726)
T KOG3621|consen 37 KLTCVDAT--------EEYLAMGSSAGSVYLYNRHTGEM--RKLK--NE-------G---AT-GITCVRSVSSVEYLVAA 93 (726)
T ss_pred EEEEeecC--------CceEEEecccceEEEEecCchhh--hccc--cc-------C---cc-ceEEEEEecchhHhhhh
Confidence 44466554 57899999999999998544321 1221 00 0 01 112344557766 6788
Q ss_pred EECCCcEEEEeccccccccc-----ccc-CCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 438 GSLDGKIRLYSKTSMRQAKT-----AFP-GLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 438 GS~DGtIRLWD~~t~r~akt-----~L~-GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
|+..|.|-++-+... ++.. .+. .|+..|+++++|+||..+.+ -..+.|.+.-+
T Consensus 94 gt~~g~V~v~ql~~~-~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKE-LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred hcCCceEEeehhhcc-CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 999999999887652 2111 111 47889999999999999998 45577766643
No 365
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=79.62 E-value=4.8 Score=47.96 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=75.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccc
Q 047036 376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQA 455 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~a 455 (634)
.++|.|...|||-+.|+-+.. +...+.-|.+.| .|-.|.....+-+++.+.- .=++|+.-+.+-|=|+++|. .
T Consensus 438 pLvAvGT~sGTV~vvdvst~~-v~~~fsvht~~V----kgleW~g~sslvSfsys~~-n~~sg~vrN~l~vtdLrtGl-s 510 (1062)
T KOG1912|consen 438 PLVAVGTNSGTVDVVDVSTNA-VAASFSVHTSLV----KGLEWLGNSSLVSFSYSHV-NSASGGVRNDLVVTDLRTGL-S 510 (1062)
T ss_pred eeEEeecCCceEEEEEecchh-hhhhhcccccce----eeeeeccceeEEEeeeccc-cccccceeeeEEEEEccccc-c
Confidence 589999999999999998742 334444455433 1333333344444443321 23577777889999998874 3
Q ss_pred cccccC----CCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 456 KTAFPG----LGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 456 kt~L~G----H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
+ .|.| -..||+.|.+|.-|+||+. =.|.-+-|||++
T Consensus 511 k-~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 511 K-RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred c-ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 3 2333 3479999999999999998 789999999984
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.24 E-value=68 Score=34.91 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=50.5
Q ss_pred CcEEEEeCCCCcEEEE-EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-C----------CCeEEEEEcCCCCce-E
Q 047036 333 PGVQQLDIETGKIVTE-WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-D----------DNRLCQWDMRDRSGI-V 399 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~-lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~----------D~tIklWD~R~~~~~-V 399 (634)
.+|+++|+++|+.+.. +..-.. .-+.|+++ +..++-.. . ...|++|.+-+...- +
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~----~~~~W~~d--------~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~ 217 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKF----SSVSWSDD--------GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE 217 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEES----EEEEECTT--------SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E
T ss_pred EEEEEEECCCCcCcCCccccccc----ceEEEeCC--------CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCe
Confidence 6899999999998864 343332 21589998 34444443 3 234788887654321 1
Q ss_pred EecccCCCCccccccccccccCcceEEEEECCCC-eEEE-EECC---CcEEEEeccc
Q 047036 400 QNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVV-GSLD---GKIRLYSKTS 451 (634)
Q Consensus 400 q~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IAS-GS~D---GtIRLWD~~t 451 (634)
-.+.+.. ....+..+..+++| +|++ .+.. ..|.+-|+..
T Consensus 218 lvfe~~~-------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 218 LVFEEPD-------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEC-TT-------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred eEEeecC-------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 1121111 01114456778888 5443 3322 3477777654
No 367
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.55 E-value=44 Score=34.58 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=40.6
Q ss_pred eEEEEECCCCe-EEEEECCCcEEEEe-cccccc--ccccccCCCCCeEEEEECCCCCEEEE-Ec---CCcEEEEEc
Q 047036 424 FQCFASTGDGS-IVVGSLDGKIRLYS-KTSMRQ--AKTAFPGLGSPITHVDVTYDGKWILG-TT---DTYLILICT 491 (634)
Q Consensus 424 fssva~s~dG~-IASGS~DGtIRLWD-~~t~r~--akt~L~GH~d~ItsVdfSpDGk~LlS-S~---D~tIrLWD~ 491 (634)
++.-.++++|. .++...+...+++- ...++. .....++....|++|.+||||..||- .. ++.|.+--+
T Consensus 68 l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 68 LTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred cccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 44556677884 45556677777773 222211 11222333338999999999999987 42 455655544
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.64 E-value=8.5 Score=41.45 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC
Q 047036 383 DDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG 461 (634)
Q Consensus 383 ~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G 461 (634)
..+.+.++|+.++. +..+... ......+.++|+| .||-. .++.|.|++..++....-+..|
T Consensus 21 ~~~~y~i~d~~~~~--~~~l~~~---------------~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 21 FKGDYYIYDIETGE--ITPLTPP---------------PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEEEETTTTE--EEESS-E---------------ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--
T ss_pred cceeEEEEecCCCc--eEECcCC---------------ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEecccc
Confidence 34678999998753 2344210 1123456789999 55555 4689999997664211112223
Q ss_pred -------CC---------CCeEEEEECCCCCEEEE-E-cCCcEEEEEc
Q 047036 462 -------LG---------SPITHVDVTYDGKWILG-T-TDTYLILICT 491 (634)
Q Consensus 462 -------H~---------d~ItsVdfSpDGk~LlS-S-~D~tIrLWD~ 491 (634)
.. +.=.++-+||||++||- . .++.|+.+.+
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 11 11256789999999997 4 4566666654
No 369
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.73 E-value=35 Score=36.96 Aligned_cols=112 Identities=17% Similarity=0.182 Sum_probs=73.7
Q ss_pred CCCcEEEEE----eccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeE-EEEEcCCCCceEEecccCCCCccccccc
Q 047036 341 ETGKIVTEW----KFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRL-CQWDMRDRSGIVQNMVKGDSPVLHWTQG 415 (634)
Q Consensus 341 eTGK~V~~l----kgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tI-klWD~R~~~~~Vq~l~gh~s~V~~~~~g 415 (634)
+.||++... ++|. + .|+|..+ .-++-+-.-+|- .++|+..++.+ +++.... +-
T Consensus 56 eaGk~v~~~~lpaR~Hg------i-~~~p~~~-------ravafARrPGtf~~vfD~~~~~~p-v~~~s~~-------~R 113 (366)
T COG3490 56 EAGKIVFATALPARGHG------I-AFHPALP-------RAVAFARRPGTFAMVFDPNGAQEP-VTLVSQE-------GR 113 (366)
T ss_pred cCCceeeeeecccccCC------e-ecCCCCc-------ceEEEEecCCceEEEECCCCCcCc-EEEeccc-------Cc
Confidence 458888765 5664 3 7888743 567777777765 46798877654 4443211 12
Q ss_pred cccccCcceEEEEECCCCeEEEEE------CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036 416 HQFSRGTNFQCFASTGDGSIVVGS------LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 416 ~~y~~~~~fssva~s~dG~IASGS------~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
|-|- .-+|++||.+.-++ .-|.|=|||...+-+..-.+++|+---..|.+.+||+.|+.
T Consensus 114 HfyG------HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 114 HFYG------HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred eeec------ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence 3332 23579999544443 23689999986532334578889887889999999999875
No 370
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.84 E-value=14 Score=37.68 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=44.0
Q ss_pred CCeEEEEECCCcEEEEeccccccccc------ccc-------CCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 432 DGSIVVGSLDGKIRLYSKTSMRQAKT------AFP-------GLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 432 dG~IASGS~DGtIRLWD~~t~r~akt------~L~-------GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
+.+|.+-..+|.+++||+.+++.... .|. .....|+++.++.+|.=|++-.++....|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 44788889999999999987542111 122 35678999999999999998334566677643
No 371
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.50 E-value=53 Score=41.63 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=54.5
Q ss_pred CcceEEEEECCCCeEEEEECCCcEEEEecc----c---cccc----------------ccccc-CCCCCeEEEEECCCCC
Q 047036 421 GTNFQCFASTGDGSIVVGSLDGKIRLYSKT----S---MRQA----------------KTAFP-GLGSPITHVDVTYDGK 476 (634)
Q Consensus 421 ~~~fssva~s~dG~IASGS~DGtIRLWD~~----t---~r~a----------------kt~L~-GH~d~ItsVdfSpDGk 476 (634)
+..++|++.+.+|+|.-|+.|| .||.+. . ++++ .-.++ ++.+||..|.+-..-.
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 5678999989999999999999 667652 0 1101 11244 6789999999999888
Q ss_pred EEEE-EcCCcEEEEEcc
Q 047036 477 WILG-TTDTYLILICTL 492 (634)
Q Consensus 477 ~LlS-S~D~tIrLWD~~ 492 (634)
.|.+ +..++|..||+.
T Consensus 256 IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred eeeeeccCceEEEEEcc
Confidence 8889 999999999986
No 372
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=74.39 E-value=1.1e+02 Score=32.16 Aligned_cols=131 Identities=12% Similarity=0.139 Sum_probs=72.7
Q ss_pred CcEEEEeCCCC-----c--EEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccC
Q 047036 333 PGVQQLDIETG-----K--IVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKG 405 (634)
Q Consensus 333 ~TIrlWDleTG-----K--~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh 405 (634)
+.|++.++... + .+.+... .+. |.++.+- +..++.|. .++|+++++.....++ ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~----V~ai~~~--------~~~lv~~~-g~~l~v~~l~~~~~l~-~~~~- 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEV-KGP----VTAICSF--------NGRLVVAV-GNKLYVYDLDNSKTLL-KKAF- 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEE-SS-----EEEEEEE--------TTEEEEEE-TTEEEEEEEETTSSEE-EEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEee-cCc----ceEhhhh--------CCEEEEee-cCEEEEEEccCcccch-hhhe-
Confidence 67888888874 2 2233332 333 3344443 23455444 5899999998765222 2111
Q ss_pred CCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc--CCCCCeEEEEECCCCCEEEE-Ec
Q 047036 406 DSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSPITHVDVTYDGKWILG-TT 482 (634)
Q Consensus 406 ~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~ItsVdfSpDGk~LlS-S~ 482 (634)
+.....++++..- +.+|++|..-..|.++-.....+....+- ...-+|++++|=+|++.+++ ..
T Consensus 126 ------------~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 126 ------------YDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp ------------E-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred ------------ecceEEEEEEecc-ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 1112234454443 33999999989998884322101111111 12345899999878866665 78
Q ss_pred CCcEEEEEcc
Q 047036 483 DTYLILICTL 492 (634)
Q Consensus 483 D~tIrLWD~~ 492 (634)
++.|.++...
T Consensus 193 ~gnl~~l~~~ 202 (321)
T PF03178_consen 193 DGNLFVLRYN 202 (321)
T ss_dssp TSEEEEEEE-
T ss_pred CCeEEEEEEC
Confidence 8999998754
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=74.34 E-value=20 Score=39.86 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=71.6
Q ss_pred cceEEEEECCCCeEEEEECCCcEEEEeccccccccc--c-----cc-CCCCCeEEEEEC-----CCC---CEEEE-EcCC
Q 047036 422 TNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKT--A-----FP-GLGSPITHVDVT-----YDG---KWILG-TTDT 484 (634)
Q Consensus 422 ~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt--~-----L~-GH~d~ItsVdfS-----pDG---k~LlS-S~D~ 484 (634)
-++++++.|.=|++|+|..+|.+-|.|+++.. ... . +. .....|++|.|+ -|+ -.|+. |..+
T Consensus 87 g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 87 GPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp -SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 46899999988999999999999999998742 211 1 11 234578999888 333 34555 7789
Q ss_pred cEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCccccccccccc-ccCCCCceEEEEEcCCeEEEE
Q 047036 485 YLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWV-TENGKQERHLVATVGKFSVIW 563 (634)
Q Consensus 485 tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~-t~~g~~E~~IvtStg~~viiW 563 (634)
.+.++.+.+. ..|.....|.+... .-..+.++|.|-+... |....=++..+... .| -.-..++|+++..-+.|.
T Consensus 166 ~v~~fkIlp~-~~g~f~v~~~~~~~--~~~~~i~~I~~i~~~~-G~~a~At~~~~~~l~~g-~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 166 NVLTFKILPS-SNGRFSVQFAGATT--NHDSPILSIIPINADT-GESALATISAMQGLSKG-ISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EEEEEEEEE--GGG-EEEEEEEEE----SS----EEEEEETTT---B-B-BHHHHHGGGGT-----EEEEEE-SSEEEEE
T ss_pred CEEEEEEecC-CCCceEEEEeeccc--cCCCceEEEEEEECCC-CCcccCchhHhhccccC-CCcCcEEEEEcccceEEE
Confidence 9999987642 23444455555541 1123455555543211 11111111111100 11 112346777778888888
Q ss_pred eChhhhc
Q 047036 564 DFQQVKN 570 (634)
Q Consensus 564 dl~~v~~ 570 (634)
.+-+.+.
T Consensus 241 ~~~~~k~ 247 (395)
T PF08596_consen 241 KPPKSKG 247 (395)
T ss_dssp -TT---E
T ss_pred eCCCCcc
Confidence 7765443
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=73.99 E-value=9.5 Score=29.90 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=25.6
Q ss_pred cceEEEEECCCC-eEEEEECCCcEEEEecc
Q 047036 422 TNFQCFASTGDG-SIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 422 ~~fssva~s~dG-~IASGS~DGtIRLWD~~ 450 (634)
..+++++++|.. .||.|+.||.|.||.+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 457899999988 89999999999999974
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=73.48 E-value=1.4e+02 Score=35.21 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=70.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-CeEEEEEcCCCCceEEecccCCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-NRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
..|++++.. |....-..|... .-=.|+|| |..|++.++. ..+++.+......+ ..+.-.....
T Consensus 379 s~Lwv~~~g-g~~~~lt~g~~~----t~PsWspD--------G~~lw~v~dg~~~~~v~~~~~~gql-~~~~vd~ge~-- 442 (591)
T PRK13616 379 SSLWVGPLG-GVAVQVLEGHSL----TRPSWSLD--------ADAVWVVVDGNTVVRVIRDPATGQL-ARTPVDASAV-- 442 (591)
T ss_pred eEEEEEeCC-CcceeeecCCCC----CCceECCC--------CCceEEEecCcceEEEeccCCCceE-EEEeccCchh--
Confidence 467777863 433232344432 22389998 4566666544 33444332222221 1110000000
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEECCCcEEEE---ecccccc----ccccccCCCCCeEEEEECCCCCEEEEEcC
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLY---SKTSMRQ----AKTAFPGLGSPITHVDVTYDGKWILGTTD 483 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLW---D~~t~r~----akt~L~GH~d~ItsVdfSpDGk~LlSS~D 483 (634)
.+ .....++.+.+|+|| +||.-. +|.|.+= ....+.. .....++.++.+.++++..+++.++.+.+
T Consensus 443 ----~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~ 516 (591)
T PRK13616 443 ----AS-RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD 516 (591)
T ss_pred ----hh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecC
Confidence 00 112347888999999 676655 4666652 2222211 11123467777899999999996655544
Q ss_pred CcEEEEEcc
Q 047036 484 TYLILICTL 492 (634)
Q Consensus 484 ~tIrLWD~~ 492 (634)
..-.+|-+.
T Consensus 517 ~~~~v~~v~ 525 (591)
T PRK13616 517 PEHPVWYVN 525 (591)
T ss_pred CCCceEEEe
Confidence 444456544
No 376
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.13 E-value=46 Score=39.49 Aligned_cols=58 Identities=24% Similarity=0.275 Sum_probs=42.1
Q ss_pred CCeEEEE-ECCCcEEEEecccccccc--ccccCCCCCeEEEEEC--CCCCEEEE-EcCCcEEEEEc
Q 047036 432 DGSIVVG-SLDGKIRLYSKTSMRQAK--TAFPGLGSPITHVDVT--YDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 432 dG~IASG-S~DGtIRLWD~~t~r~ak--t~L~GH~d~ItsVdfS--pDGk~LlS-S~D~tIrLWD~ 491 (634)
-+.+|+- +.-.++.|||..++. .. ..| ...++|..++++ |||+.|++ +..+.|.|+--
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 4455443 344578999987653 22 233 357899999876 99999999 99999999963
No 377
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=72.71 E-value=5.1 Score=43.18 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=39.0
Q ss_pred CCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 440 LDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 440 ~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
..+.+.|||+.+++ + +.|......+....+||||++||-..++-|.+++..
T Consensus 21 ~~~~y~i~d~~~~~-~-~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~ 71 (353)
T PF00930_consen 21 FKGDYYIYDIETGE-I-TPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLA 71 (353)
T ss_dssp EEEEEEEEETTTTE-E-EESS-EETTBSEEEE-SSSTEEEEEETTEEEEESST
T ss_pred cceeEEEEecCCCc-e-EECcCCccccccceeecCCCeeEEEecCceEEEECC
Confidence 45789999998852 3 444433678999999999999999999999999853
No 378
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.57 E-value=88 Score=34.04 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=32.5
Q ss_pred EEEEECCCCeE--EEEEC------------------CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036 425 QCFASTGDGSI--VVGSL------------------DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 425 ssva~s~dG~I--ASGS~------------------DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
..+++.+||.| +.|+. -|.|.-+|..+.+ ....-.|+.. ..+|+|+|+|+.+++
T Consensus 127 ~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 127 NSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred cCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCC-CccceECCCCCEEEE
Confidence 45677889854 44532 1445556655432 2222234443 379999999999888
No 379
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.87 E-value=24 Score=40.32 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=42.1
Q ss_pred CeEEEEECCCcEEEEeccc----cc-------cc---cccccCC-----------CCCeEEEEECC----CCCEEEE-Ec
Q 047036 433 GSIVVGSLDGKIRLYSKTS----MR-------QA---KTAFPGL-----------GSPITHVDVTY----DGKWILG-TT 482 (634)
Q Consensus 433 G~IASGS~DGtIRLWD~~t----~r-------~a---kt~L~GH-----------~d~ItsVdfSp----DGk~LlS-S~ 482 (634)
..|+++..||.|-...+.. +. .. ...|.|. ...+.++++++ +-.+|++ +.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 3788888888887777543 00 00 0111111 24577888888 7788889 99
Q ss_pred CCcEEEEEcccccCCCCeeeeec
Q 047036 483 DTYLILICTLFSDKDGKTKTGFS 505 (634)
Q Consensus 483 D~tIrLWD~~~~~~~G~~~~gF~ 505 (634)
|++||+||+. +++++..+.
T Consensus 239 D~~LRiW~l~----t~~~~~~~~ 257 (547)
T PF11715_consen 239 DHTLRIWSLE----TGQCLATID 257 (547)
T ss_dssp TSEEEEEETT----TTCEEEEEE
T ss_pred CCeEEEEECC----CCeEEEEec
Confidence 9999999986 677765553
No 380
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=70.00 E-value=35 Score=39.38 Aligned_cols=107 Identities=19% Similarity=0.235 Sum_probs=56.6
Q ss_pred CcEEEEeCCCCcEEEEEeccCC-CcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKD-GTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~-~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
+.|+-.|+.||+++-++..... .+. ...+.....+..-+. +..++.++.|+.|...|.++++. +-...-.
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~-~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~-~W~~~~~------ 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVI-PVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKV-VWSKKNG------ 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccc-cccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCE-Eeecccc------
Confidence 4799999999999888754221 010 000000000000011 35788899999999999998753 2221100
Q ss_pred cccccccccCcceEEEEECCCCeEEEEEC------CCcEEEEeccccc
Q 047036 412 WTQGHQFSRGTNFQCFASTGDGSIVVGSL------DGKIRLYSKTSMR 453 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG~IASGS~------DGtIRLWD~~t~r 453 (634)
.......+++.-.--++.|++|+. +|.|+.+|..+++
T Consensus 150 -----~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 150 -----DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred -----cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 000001111100011566666653 7889999988874
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=69.15 E-value=1.7e+02 Score=31.57 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEe-ccccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYS-KTSMR 453 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD-~~t~r 453 (634)
|.+++.++.-+-+.-||+-... .. -|...+..+++++.|++++.|-.....|.|++=+ .....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~-----w~-----------~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTT-----WQ-----------PHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGE 219 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS------E-----------EEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEE
T ss_pred CcEEEEECcccEEEEecCCCcc-----ce-----------EEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcc
Confidence 6778888777777888874211 10 1112234578999999999776677999999876 11111
Q ss_pred ---cccccccCCCCCeEEEEECCCCCEEEEEcCCcEE
Q 047036 454 ---QAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLI 487 (634)
Q Consensus 454 ---~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIr 487 (634)
.....+..-+--|..|++.+++...|++-.++|.
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 1112222234458999999999888887777653
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=67.09 E-value=15 Score=28.76 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=26.7
Q ss_pred CCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 462 LGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
...+|..+++||....||. +.|+.|.|+.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 4467999999999999998 89999999985
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=66.79 E-value=1.1e+02 Score=36.36 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=59.6
Q ss_pred EEEEEeCCCeEEEEEcCCCCce-EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccc--
Q 047036 377 STFLGLDDNRLCQWDMRDRSGI-VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSM-- 452 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~~~-Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~-- 452 (634)
..+.-++-.++.|||.+.+.-. -+.+. ..+. ....++ .++|+| .|.+-+..+.|.||--.-.
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~-~~~~----------I~dLDW---tst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFS-EDDP----------IRDLDW---TSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeec-CCCc----------eeecee---eecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 4444566788999999865310 01110 0111 122223 347888 6777788999999974210
Q ss_pred --c----c-c-cccccCCC-CCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 453 --R----Q-A-KTAFPGLG-SPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 453 --r----~-a-kt~L~GH~-d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
. . . +..+..|+ .||.+..+-+||..+++ +.+.+.|.|-.
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDKW 156 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECCC
Confidence 0 0 0 01234566 78999999999986654 46677777743
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=65.95 E-value=1.6e+02 Score=29.94 Aligned_cols=98 Identities=14% Similarity=0.243 Sum_probs=55.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCC-CeEEEEECCCcEEEEeccccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGD-GSIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~d-G~IASGS~DGtIRLWD~~t~r 453 (634)
++.|+.|..+| |.+++........+.+ ....+..+..-+. +.|++= .|+.++++++....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~-----------------~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL-----------------KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLE 67 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe-----------------ecceEEEEEEecccCEEEEE-cCCccEEEEchhhc
Confidence 57999999988 9999983222222221 1122455555554 433332 35999999987653
Q ss_pred cccc--------------cccCCCCCeEEEE--ECCCCCE-EEEEcCCcEEEEEcc
Q 047036 454 QAKT--------------AFPGLGSPITHVD--VTYDGKW-ILGTTDTYLILICTL 492 (634)
Q Consensus 454 ~akt--------------~L~GH~d~ItsVd--fSpDGk~-LlSS~D~tIrLWD~~ 492 (634)
.... .++ ....+...+ -.+.|.. |+....+.|+||...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~ 122 (275)
T PF00780_consen 68 PVSTSAPLAFPKSRSLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN 122 (275)
T ss_pred ccccccccccccccccccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEE
Confidence 2211 122 122344444 2344444 444888899999865
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=65.11 E-value=9.3 Score=46.39 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=46.4
Q ss_pred CeEEEEECCCcEEEEeccccccccccccCCCCCeEEE-----------EECCCCCEEEE-EcCCcEEEEEccc
Q 047036 433 GSIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHV-----------DVTYDGKWILG-TTDTYLILICTLF 493 (634)
Q Consensus 433 G~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsV-----------dfSpDGk~LlS-S~D~tIrLWD~~~ 493 (634)
-+|-.|-.+++|||-.... .....+.+|+..++.+ .+||||+.+|. +.|++++.|-+.+
T Consensus 196 ~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 3677788899999876543 2345677899777665 37999999998 8999999999875
No 386
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=64.03 E-value=17 Score=26.21 Aligned_cols=19 Identities=21% Similarity=0.038 Sum_probs=14.6
Q ss_pred CCCCeEEEEECCCCCEEEE
Q 047036 462 LGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 462 H~d~ItsVdfSpDGk~LlS 480 (634)
.........|||||++|+=
T Consensus 7 ~~~~~~~p~~SpDGk~i~f 25 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYF 25 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEE
T ss_pred CCccccCEEEecCCCEEEE
Confidence 3446789999999999985
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.67 E-value=29 Score=40.79 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=38.6
Q ss_pred cEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 047036 334 GVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGI 398 (634)
Q Consensus 334 TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~ 398 (634)
.|-+--+. -+.+.++..|...|. ...+|.|| |..||.|-.||+|++.|+..+..+
T Consensus 43 elli~R~n-~qRlwtip~p~~~v~-~sL~W~~D--------GkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 43 ELLIHRLN-WQRLWTIPIPGENVT-ASLCWRPD--------GKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cEEEEEec-cceeEeccCCCCccc-eeeeecCC--------CCEEEEEecCCeEEEEEccCCCce
Confidence 34444444 445555555555542 35699999 679999999999999999987643
No 388
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=63.56 E-value=76 Score=38.35 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=67.0
Q ss_pred CEEEEEeCCC----eEEEEEcCCCCceEEecccCC----------CCccccccccccccCcceEEEEECCCC-eEEEEEC
Q 047036 376 ESTFLGLDDN----RLCQWDMRDRSGIVQNMVKGD----------SPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL 440 (634)
Q Consensus 376 ~~laSGS~D~----tIklWD~R~~~~~Vq~l~gh~----------s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~ 440 (634)
..+++.+..+ .|.+|-++.....+..+.... .....|..--+......+.+++...-+ .|+.+-.
T Consensus 200 ~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~ 279 (753)
T PF11635_consen 200 EILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFS 279 (753)
T ss_pred eEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEc
Confidence 4565555444 799999997543333321100 011111111122234556777777666 7999999
Q ss_pred CCcEEEEeccccccccc-------------------cccCCCCCeEEEEECCCCCEEEE-EcCCcEE
Q 047036 441 DGKIRLYSKTSMRQAKT-------------------AFPGLGSPITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 441 DGtIRLWD~~t~r~akt-------------------~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
||+|.++|+.+++..-. .|| +-.++..|+|||.+--+|. ..++.+.
T Consensus 280 DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 280 DGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CCeEEEEecCcchhhcccccccCCccccccccccccccc-cCCCCceEEECcccceEEEEecCCCce
Confidence 99999999988631111 122 2235667999999999988 7776654
No 389
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=63.40 E-value=25 Score=34.23 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.5
Q ss_pred CeEEEEECCCC-----CEEEE--EcCCcEEEEEcc
Q 047036 465 PITHVDVTYDG-----KWILG--TTDTYLILICTL 492 (634)
Q Consensus 465 ~ItsVdfSpDG-----k~LlS--S~D~tIrLWD~~ 492 (634)
.|.++++||-| +.||+ |.++.|.||-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68999999955 56665 899999999743
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=62.29 E-value=72 Score=38.74 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=67.0
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcc----eeE--EEEe--cCCCC-------CCCCCCCEEEE
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTD----ITM--RDIT--NDTKS-------SQLDPSESTFL 380 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~----I~v--vsfs--Pd~K~-------~q~~~g~~laS 380 (634)
+..|.++++. +.|+-.|..|||.+-++.-+...-. .++ +++- |.... .... +..|+.
T Consensus 194 gg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~-~~rV~~ 265 (764)
T TIGR03074 194 GDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC-ARRIIL 265 (764)
T ss_pred CCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc-CCEEEE
Confidence 3445555543 4799999999999988765432100 000 1111 11000 0011 358999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCcccccccc-ccc-cCcceEEEEECCCCeEEEEEC----------CCcEEEEe
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGH-QFS-RGTNFQCFASTGDGSIVVGSL----------DGKIRLYS 448 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~-~y~-~~~~fssva~s~dG~IASGS~----------DGtIRLWD 448 (634)
++.|+.|.-.|.++++. +..+. .+..| +|..+. ... ..+.+++.-.--++.|++|+. +|.||-+|
T Consensus 266 ~T~Dg~LiALDA~TGk~-~W~fg-~~G~v-dl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 266 PTSDARLIALDADTGKL-CEDFG-NNGTV-DLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred ecCCCeEEEEECCCCCE-EEEec-CCCce-eeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 99999999999999763 34432 11111 111110 000 000011100111567777753 68899999
Q ss_pred ccccc
Q 047036 449 KTSMR 453 (634)
Q Consensus 449 ~~t~r 453 (634)
+.+++
T Consensus 343 a~TGk 347 (764)
T TIGR03074 343 VNTGA 347 (764)
T ss_pred CCCCc
Confidence 99885
No 391
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.25 E-value=83 Score=38.60 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=91.7
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
.+.++.|...+|+.+ ..- +.+.+|...+-+.-..-..|... |.++.|||+ |..+.|
T Consensus 63 tSLCWHpe~~vLa~g---------we~-----g~~~v~~~~~~e~htv~~th~a~--i~~l~wS~~--------G~~l~t 118 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQG---------WEM-----GVSDVQKTNTTETHTVVETHPAP--IQGLDWSHD--------GTVLMT 118 (1416)
T ss_pred hhhccChHHHHHhhc---------ccc-----ceeEEEecCCceeeeeccCCCCC--ceeEEecCC--------CCeEEE
Confidence 456777877665543 211 57889988765544445567765 578899999 789999
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-------eEEEEECCCcEE-EEecccc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-------SIVVGSLDGKIR-LYSKTSM 452 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-------~IASGS~DGtIR-LWD~~t~ 452 (634)
+-.-+.|.+|-....+. +|... ++ .|+|....-..|.-.++++ .+|+.+.++-+- +++.+.
T Consensus 119 ~d~~g~v~lwr~d~~g~-~q~~~-----~~----~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~- 187 (1416)
T KOG3617|consen 119 LDNPGSVHLWRYDVIGE-IQTSN-----IM----QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKE- 187 (1416)
T ss_pred cCCCceeEEEEeeeccc-cccch-----hh----hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCcc-
Confidence 99999999996543332 33321 11 2333222234455557763 356666666665 666542
Q ss_pred ccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036 453 RQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 453 r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
+.+...+. |.. +|+|...+. +.+++|.-.| ..|++..
T Consensus 188 ~~a~rs~~-ksg-------v~~g~~F~~~~~~GtVyyvd-----q~g~~~~ 225 (1416)
T KOG3617|consen 188 SLAERSDE-KSG-------VPKGTEFLFAGKSGTVYYVD-----QNGRQRT 225 (1416)
T ss_pred chhhcccc-ccC-------CCCCcEEEEEcCCceEEEEc-----CCCcEEE
Confidence 11222222 221 367765554 8888888777 3455544
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=62.19 E-value=2e+02 Score=34.78 Aligned_cols=108 Identities=11% Similarity=0.169 Sum_probs=63.0
Q ss_pred eEEEEECCCcEEEEeccccc----cc---------------cccccCCCCCeEEEEEC--CCCCEEEE-EcCCcEEEEEc
Q 047036 434 SIVVGSLDGKIRLYSKTSMR----QA---------------KTAFPGLGSPITHVDVT--YDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 434 ~IASGS~DGtIRLWD~~t~r----~a---------------kt~L~GH~d~ItsVdfS--pDGk~LlS-S~D~tIrLWD~ 491 (634)
.|+.|..||.|-+|-....- +. ...+ -.+...++||+. ...+.||. +.-..|-|+=.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 68999999999999764310 01 0111 245678999998 77788877 55566666642
Q ss_pred ccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccC-CCcccccccccccccCCCCceEEEEEcCCeEEEEeCh
Q 047036 492 LFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAG-TDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQ 566 (634)
Q Consensus 492 ~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g-~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~ 566 (634)
... +. .+. ..|++.+... -.++|.++.-+. .|. +..++++..+-+.+|+++
T Consensus 195 ~l~--~~--------r~~----------~~~s~~~~hNIP~VSFl~~~~d~---~G~-v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 195 ALV--DE--------RFY----------HVPSHQHSHNIPNVSFLDDDLDP---NGH-VKVVATDISGEVWTFKIK 246 (717)
T ss_pred ecc--cc--------ccc----------cccccccccCCCeeEeecCCCCC---ccc-eEEEEEeccCcEEEEEEE
Confidence 210 00 010 1112111111 358999885442 132 344556889999999985
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=62.13 E-value=86 Score=35.78 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=60.8
Q ss_pred CcEEEEeCCCCcEEEEEeccCCC-cceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEc-CCCC---ceEEecccCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDG-TDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDM-RDRS---GIVQNMVKGD 406 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~-V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~-R~~~---~~Vq~l~gh~ 406 (634)
.+|.+||+.+.++++++.--..+ +++.| .|..+-.- ..=|+| --..+|.+|=- ..+. +.|..+..
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEv-RflH~P~~------~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~-- 292 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEV-RFLHDPDA------NYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA-- 292 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEE-EE-SSTT--------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE----
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEE-EecCCCCc------cceEEEEeccceEEEEEEcCCCCeeeeEEEECCC--
Confidence 68999999999999999765433 33344 66555221 222322 23445555543 3221 12222221
Q ss_pred CCcccccc---ccccc-cCcceEEEEECCCC-eEE-EEECCCcEEEEecccccccccc----ccC--------------C
Q 047036 407 SPVLHWTQ---GHQFS-RGTNFQCFASTGDG-SIV-VGSLDGKIRLYSKTSMRQAKTA----FPG--------------L 462 (634)
Q Consensus 407 s~V~~~~~---g~~y~-~~~~fssva~s~dG-~IA-SGS~DGtIRLWD~~t~r~akt~----L~G--------------H 462 (634)
..|-.|.. .+.+. .-.-++-+..|-|. +|. ++=.+|.||.||+....+.|.+ |-| .
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 01100100 00000 01113455667666 664 5558999999999763322211 111 0
Q ss_pred CCCeEEEEECCCCCEEEE
Q 047036 463 GSPITHVDVTYDGKWILG 480 (634)
Q Consensus 463 ~d~ItsVdfSpDGk~LlS 480 (634)
.....=|.+|.||+.|--
T Consensus 373 ~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -S----EEE-TTSSEEEE
T ss_pred CCCCCeEEEccCCeEEEE
Confidence 112256899999999865
No 394
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=61.96 E-value=20 Score=33.12 Aligned_cols=57 Identities=18% Similarity=0.370 Sum_probs=41.9
Q ss_pred eEEEEec--c-e--eeeeeccccCcccccc-cceEEEEe---C---c---EEEEEcCChHHHHHHHHHHHHh
Q 047036 128 FWVLKVG--S-K--VRAKVSTEMQLKMFGD-QRRIDFVD---K---G---VWALKFFSDSEYRKFVTEFQDR 184 (634)
Q Consensus 128 ~w~~~~g--~-~--~~~~v~~~~~~~~~~~-~~~~~f~~---~---~---~w~lkF~~~~~~~~F~~~~~~~ 184 (634)
|-|++.- . + |.+.|.+.|.+..... ...+.|.+ . + +|+|||++.+...+|.+.+..|
T Consensus 49 ~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~ 120 (122)
T cd00835 49 YRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEA 120 (122)
T ss_pred EEEEEEeCCccEEEEeeEecCCcEEeecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHh
Confidence 4566632 2 2 8999999999873321 45666653 1 2 8999999999999999999876
No 395
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=60.78 E-value=2.2e+02 Score=29.85 Aligned_cols=158 Identities=15% Similarity=0.181 Sum_probs=78.1
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEe-CCCeEEEEEc
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGL-DDNRLCQWDM 392 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS-~D~tIklWD~ 392 (634)
+++++.|++-.+.+ ..|...|++ |++++++...... +.--+++..+ ..++..+ .+++|.+.++
T Consensus 30 ~pd~~tLfaV~d~~-----~~i~els~~-G~vlr~i~l~g~~-D~EgI~y~g~---------~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 30 NPDTGTLFAVQDEP-----GEIYELSLD-GKVLRRIPLDGFG-DYEGITYLGN---------GRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp ETTTTEEEEEETTT-----TEEEEEETT---EEEEEE-SS-S-SEEEEEE-ST---------TEEEEEETTTTEEEEEEE
T ss_pred cCCCCeEEEEECCC-----CEEEEEcCC-CCEEEEEeCCCCC-CceeEEEECC---------CEEEEEEcCCCcEEEEEE
Confidence 44444444444433 789999975 9999986443211 1123355443 3455444 5899999988
Q ss_pred CCCCce-----EEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccc---cc----ccc-
Q 047036 393 RDRSGI-----VQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMR---QA----KTA- 458 (634)
Q Consensus 393 R~~~~~-----Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r---~a----kt~- 458 (634)
...... ++.+. .+-.-..+..|-.+|.++.+ .|.++-...-.+||.+.... .. ...
T Consensus 94 ~~~~~~~~~~~~~~~~----------l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 94 DDDTTSLDRADVQKIS----------LGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp ----TT--EEEEEEEE-------------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred eccccccchhhceEEe----------cccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence 432211 11111 01111234458899998875 77778888888888875410 00 001
Q ss_pred --ccCCCCCeEEEEECCCCCEEEE--EcCCcEEEEEcccccCCCCeee
Q 047036 459 --FPGLGSPITHVDVTYDGKWILG--TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 459 --L~GH~d~ItsVdfSpDGk~LlS--S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
...+..-+.+|+|.|.-..|+. .....|..+|. +|+.+.
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~ 206 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVS 206 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEE
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEE
Confidence 1123345789999988655544 45677777783 566443
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.75 E-value=3.9e+02 Score=32.41 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=24.8
Q ss_pred CcceEEEEECCC----CeEEEEECCCcEEEEeccc
Q 047036 421 GTNFQCFASTGD----GSIVVGSLDGKIRLYSKTS 451 (634)
Q Consensus 421 ~~~fssva~s~d----G~IASGS~DGtIRLWD~~t 451 (634)
...+..+.+.|. .+|++=..|++||+||+..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 345677788775 3799999999999999864
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=59.70 E-value=20 Score=37.74 Aligned_cols=51 Identities=25% Similarity=0.219 Sum_probs=40.9
Q ss_pred cCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEe
Q 047036 305 STPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDIT 364 (634)
Q Consensus 305 fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs 364 (634)
..|+++.+ +.++++.++.=+- ++|...|+.|||++.+++-.+..| +.++|.
T Consensus 212 ~~PDGm~I-D~eG~L~Va~~ng------~~V~~~dp~tGK~L~eiklPt~qi--tsccFg 262 (310)
T KOG4499|consen 212 LEPDGMTI-DTEGNLYVATFNG------GTVQKVDPTTGKILLEIKLPTPQI--TSCCFG 262 (310)
T ss_pred CCCCcceE-ccCCcEEEEEecC------cEEEEECCCCCcEEEEEEcCCCce--EEEEec
Confidence 45888766 7789988876442 799999999999999999988764 566775
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=59.08 E-value=1.6e+02 Score=31.44 Aligned_cols=150 Identities=11% Similarity=0.158 Sum_probs=77.0
Q ss_pred CCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 315 GETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 315 ~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
.++.++-+.+... ...|+.+|++||+++++..-.....-=.+ ++..+ .+...-=..++++++|+.+
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGi-t~~~d---------~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGI-TILGD---------KLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEE-EEETT---------EEEEEESSSSEEEEEETTT
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeE-EEECC---------EEEEEEecCCeEEEEcccc
Confidence 4455666666653 25899999999999887554432110011 22222 3444555689999999986
Q ss_pred CCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEecccccccccccc--CCCCC---eEEE
Q 047036 395 RSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAFP--GLGSP---ITHV 469 (634)
Q Consensus 395 ~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L~--GH~d~---ItsV 469 (634)
-+ .+.++.-.. .=.-+| +.+..|+.......|+.+|..+.+ .+..+. ..+.| ++-|
T Consensus 120 l~-~~~~~~y~~----------------EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNEL 180 (264)
T PF05096_consen 120 LK-KIGTFPYPG----------------EGWGLT-SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNEL 180 (264)
T ss_dssp TE-EEEEEE-SS----------------S--EEE-ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEE
T ss_pred ce-EEEEEecCC----------------cceEEE-cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeE
Confidence 43 344442100 012233 223367776667899999987753 222222 22333 3334
Q ss_pred EECCCCCEEEE-EcCCcEEEEEcccccCCCCeee
Q 047036 470 DVTYDGKWILG-TTDTYLILICTLFSDKDGKTKT 502 (634)
Q Consensus 470 dfSpDGk~LlS-S~D~tIrLWD~~~~~~~G~~~~ 502 (634)
-+- +|...|= =....|..+|.. +|+...
T Consensus 181 E~i-~G~IyANVW~td~I~~Idp~----tG~V~~ 209 (264)
T PF05096_consen 181 EYI-NGKIYANVWQTDRIVRIDPE----TGKVVG 209 (264)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETT----T-BEEE
T ss_pred EEE-cCEEEEEeCCCCeEEEEeCC----CCeEEE
Confidence 443 5543332 235567777754 555443
No 399
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.58 E-value=2.8e+02 Score=30.27 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=83.9
Q ss_pred cccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEE
Q 047036 301 IGSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFL 380 (634)
Q Consensus 301 ~g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laS 380 (634)
.-++-.|++.++++++.. +.|-..|..||++.+-=-|....- .-+.+.|| +..-++
T Consensus 65 ~dvapapdG~VWft~qg~--------------gaiGhLdP~tGev~~ypLg~Ga~P--hgiv~gpd--------g~~Wit 120 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGT--------------GAIGHLDPATGEVETYPLGSGASP--HGIVVGPD--------GSAWIT 120 (353)
T ss_pred cccccCCCCceEEecCcc--------------ccceecCCCCCceEEEecCCCCCC--ceEEECCC--------CCeeEe
Confidence 445667899888876542 568888999998876543322221 12366787 344444
Q ss_pred EeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeE-EEEEC---------CCcEEEEecc
Q 047036 381 GLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSI-VVGSL---------DGKIRLYSKT 450 (634)
Q Consensus 381 GS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~I-ASGS~---------DGtIRLWD~~ 450 (634)
-+.. .|.+.|+++.. +..+.=- ..| -.-++....|.+.|.| .+|.. -+.|++|+.-
T Consensus 121 d~~~-aI~R~dpkt~e--vt~f~lp--------~~~---a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 121 DTGL-AIGRLDPKTLE--VTRFPLP--------LEH---ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP 186 (353)
T ss_pred cCcc-eeEEecCcccc--eEEeecc--------ccc---CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC
Confidence 3333 88888986543 3333200 001 1123445567777743 44442 2234444421
Q ss_pred ccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEc
Q 047036 451 SMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICT 491 (634)
Q Consensus 451 t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~ 491 (634)
.+..-++||.+|||..-.+ -.+++|-.+|.
T Consensus 187 -----------qG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 187 -----------QGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred -----------CCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 3445689999999997666 57899999985
No 400
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=58.09 E-value=91 Score=28.30 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=59.0
Q ss_pred eeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEec---ce--eeeeeccccCcc
Q 047036 74 VKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVG---SK--VRAKVSTEMQLK 148 (634)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g---~~--~~~~v~~~~~~~ 148 (634)
+.||.+= +.++..|+.+.-....+|++- . .+-.|+|.... ++ +...|-++|++.
T Consensus 16 A~v~~~~--p~~~~~W~~~~~~g~v~~v~d-----------------~--~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~ 74 (111)
T PF00568_consen 16 AQVYQAD--PDTKRQWSPVKGTGVVCFVKD-----------------N--SRRSYFIRLYDLQDGKVVWEQELYPGFVYT 74 (111)
T ss_dssp EEEEEEE--TTTSESEEESSSEEEEEEEEE-----------------T--TTTEEEEEEEETTTTEEEEEEEESTT-EEE
T ss_pred EEEEEEE--cCCCCcEeeCCeEEEEEEEEE-----------------C--CCCEEEEEEEEccccEEEEEeEecCCCEEE
Confidence 5666553 344556999855666889981 1 12357877643 23 888999998875
Q ss_pred cccccceEEEE-e---CcEEEEEcCChHHHHHHHHHHHHh
Q 047036 149 MFGDQRRIDFV-D---KGVWALKFFSDSEYRKFVTEFQDR 184 (634)
Q Consensus 149 ~~~~~~~~~f~-~---~~~w~lkF~~~~~~~~F~~~~~~~ 184 (634)
..+-.|. | .+.|-|-|.+.++-..|..+++++
T Consensus 75 ----~~~~~Fh~f~~~~~~~GLnF~se~eA~~F~~~v~~~ 110 (111)
T PF00568_consen 75 ----KARPFFHQFEDDDCVYGLNFASEEEADQFYKKVQEA 110 (111)
T ss_dssp ----EESSSEEEEEETTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred ----eCCCcEEEEEeCCeEEEEecCCHHHHHHHHHHHhcc
Confidence 2233444 2 359999999999999999998875
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=57.81 E-value=22 Score=27.69 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=21.9
Q ss_pred CeEEEEECCCCC--EEEE-EcC-CcEEEEEcc
Q 047036 465 PITHVDVTYDGK--WILG-TTD-TYLILICTL 492 (634)
Q Consensus 465 ~ItsVdfSpDGk--~LlS-S~D-~tIrLWD~~ 492 (634)
.|+++.|||+.- -|++ +.+ +.|.|+|++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 689999998655 4555 764 889999987
No 402
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=57.65 E-value=31 Score=37.86 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=40.7
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEE-eCCCeEEEEEcCCCCceEEecc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLG-LDDNRLCQWDMRDRSGIVQNMV 403 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSG-S~D~tIklWD~R~~~~~Vq~l~ 403 (634)
..|-.+|+.|+|+|+++..... +..++++.+.| .+|+.. ..+++|.++|+++++ .+.++.
T Consensus 269 teVWv~D~~t~krv~Ri~l~~~---~~Si~Vsqd~~-------P~L~~~~~~~~~l~v~D~~tGk-~~~~~~ 329 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVARIPLEHP---IDSIAVSQDDK-------PLLYALSAGDGTLDVYDAATGK-LVRSIE 329 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEEEE---ESEEEEESSSS--------EEEEEETTTTEEEEEETTT---EEEEE-
T ss_pred eEEEEEECCCCeEEEEEeCCCc---cceEEEccCCC-------cEEEEEcCCCCeEEEEeCcCCc-EEeehh
Confidence 5688899999999999985322 23458887743 255544 457999999999874 455553
No 403
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.32 E-value=9.5 Score=33.90 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=28.5
Q ss_pred EECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE
Q 047036 438 GSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 438 GS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS 480 (634)
+..+|.+--||..++ +....+.++.- -++|++||||.+|+-
T Consensus 33 ~~~~GRll~ydp~t~-~~~vl~~~L~f-pNGVals~d~~~vlv 73 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTK-ETTVLLDGLYF-PNGVALSPDESFVLV 73 (89)
T ss_dssp T---EEEEEEETTTT-EEEEEEEEESS-EEEEEE-TTSSEEEE
T ss_pred CCCCcCEEEEECCCC-eEEEehhCCCc-cCeEEEcCCCCEEEE
Confidence 334566778999885 46667777764 499999999998765
No 404
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=56.79 E-value=41 Score=31.29 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=37.5
Q ss_pred eeeeeccccCcccccccceEEEEe------CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036 137 VRAKVSTEMQLKMFGDQRRIDFVD------KGVWALKFFSDSEYRKFVTEFQDRL 185 (634)
Q Consensus 137 ~~~~v~~~~~~~~~~~~~~~~f~~------~~~w~lkF~~~~~~~~F~~~~~~~l 185 (634)
|.-.|.++|-+. +-+-.|.- +.+|-|-|.+.++...|.++|..+|
T Consensus 57 INc~i~~~~~y~----kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~F~~~f~~~~ 107 (111)
T cd01206 57 INSTITPNMTFT----KTSQKFGQWADSRANTVYGLGFSSEQQLTKFAEKFQEVK 107 (111)
T ss_pred EeccccCCccee----ecccccccccccccceeeecccCCHHHHHHHHHHHHHHH
Confidence 889999999876 55556652 3599999999999999999998876
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=56.56 E-value=97 Score=35.01 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=67.7
Q ss_pred eEEEEECCCcEEEEecccccccc---cccc-CCCCCeEEEEECC----CCCEEEE-EcCCcEEEEEcccccCCCCeeeee
Q 047036 434 SIVVGSLDGKIRLYSKTSMRQAK---TAFP-GLGSPITHVDVTY----DGKWILG-TTDTYLILICTLFSDKDGKTKTGF 504 (634)
Q Consensus 434 ~IASGS~DGtIRLWD~~t~r~ak---t~L~-GH~d~ItsVdfSp----DGk~LlS-S~D~tIrLWD~~~~~~~G~~~~gF 504 (634)
.|++||..|.+|+|+..... .. ..|+ -.+.||..|..=+ .....++ =.-+.|.++.+...+ |.
T Consensus 39 ~IivGS~~G~LrIy~P~~~~-~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~--g~----- 110 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNE-FQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD--GT----- 110 (418)
T ss_pred EEEEeccccEEEEEccCCCC-CCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC--CC-----
Confidence 79999999999999986432 11 1222 4678999987642 2333444 778888888875322 21
Q ss_pred cCCCCCCCCCceeEeecCCCccccCCCcccccccccccccCCCCceEEEEEcCCeEEEEeChhhh
Q 047036 505 SGRMGNKIPAPRLLKLTPLDSHLAGTDNKIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVK 569 (634)
Q Consensus 505 ~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~ 569 (634)
..| ++ -..|.+.-+|... ....||+-+.|-...+ .+...|-|-|+.+.+++-+.+.
T Consensus 111 ~~~-g~----~~~L~~~yeh~l~-~~a~nm~~G~Fgg~~~---~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 111 VEH-GN----QYQLELIYEHSLQ-RTAYNMCCGPFGGVKG---RDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred ccc-Cc----EEEEEEEEEEecc-cceeEEEEEECCCCCC---ceEEEEEecCceEEEEeCCcEE
Confidence 000 10 0233333344321 1245666666642111 2344455888888888765444
No 406
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=56.25 E-value=28 Score=31.80 Aligned_cols=90 Identities=16% Similarity=0.335 Sum_probs=53.1
Q ss_pred ceeEEEEecCCCCCceEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEe--cc-e--eeeeeccccCc
Q 047036 73 PVKLYLHIGGNTPKAKWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKV--GS-K--VRAKVSTEMQL 147 (634)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~--g~-~--~~~~v~~~~~~ 147 (634)
.+|||.+-..+ ..|.--- .-..++.+. . ++ + .+-|++. +. + |.+.|.+.|.+
T Consensus 16 r~Kl~~~~~~~---~~W~erG-~G~l~i~~~-----------k-~~-----~--~~RlvmR~d~~~kv~lN~~i~~~m~~ 72 (122)
T PF00638_consen 16 RAKLYRFDKED---KEWKERG-VGTLKILKH-----------K-ET-----G--KYRLVMRRDGTGKVLLNHPIFKGMKL 72 (122)
T ss_dssp EEEEEEEETTT---TEEEEEE-EEEEEEEEE-----------T-TS-----C--EEEEEEEETTTTEEEEEEE--TTC-E
T ss_pred EEEEEEEeCCC---CCccccc-eeEEEEEEc-----------c-CC-----c--ceEEEEEEcccCceeEEEEecCCcee
Confidence 37999886543 6884322 223344442 0 00 1 2456663 22 3 89999999998
Q ss_pred cccccc-ceEEEEe------Cc---EEEEEcCChHHHHHHHHHHHHhH
Q 047036 148 KMFGDQ-RRIDFVD------KG---VWALKFFSDSEYRKFVTEFQDRL 185 (634)
Q Consensus 148 ~~~~~~-~~~~f~~------~~---~w~lkF~~~~~~~~F~~~~~~~l 185 (634)
+-.... ....|+. ++ .|+|||.+.+.-.+|...|..|-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~ 120 (122)
T PF00638_consen 73 KPMKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDADEFKKKIEEAK 120 (122)
T ss_dssp EESTTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred cccccCCcEEEEEeccccCCCCceEEEEEEECCHHHHHHHHHHHHHHh
Confidence 643322 3445532 12 99999999999999999998773
No 407
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=56.00 E-value=1.2e+02 Score=33.40 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=37.2
Q ss_pred EEEECCCCeEEEEECCCcEEEEeccc----cccc----------cccccC-CC-CC-eEEEEECCCCCEEEE-EcCCcEE
Q 047036 426 CFASTGDGSIVVGSLDGKIRLYSKTS----MRQA----------KTAFPG-LG-SP-ITHVDVTYDGKWILG-TTDTYLI 487 (634)
Q Consensus 426 sva~s~dG~IASGS~DGtIRLWD~~t----~r~a----------kt~L~G-H~-d~-ItsVdfSpDGk~LlS-S~D~tIr 487 (634)
++..+..|+|+-++.++..-+|.+.- .+.. ...+++ +. ++ |.+|.+-+.-++|.+ +.++.|.
T Consensus 135 ~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq 214 (422)
T PF08801_consen 135 FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQ 214 (422)
T ss_dssp EEEEETT--EEEEEE-TTS-EEEEE-TT-----------------------------EEEEEEETTTTEEEEEESSE-EE
T ss_pred EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEE
Confidence 56667788877766666445555431 1000 011232 22 45 999999999999999 9999999
Q ss_pred EEEcc
Q 047036 488 LICTL 492 (634)
Q Consensus 488 LWD~~ 492 (634)
+|++.
T Consensus 215 ~w~l~ 219 (422)
T PF08801_consen 215 VWDLG 219 (422)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 99985
No 408
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=55.87 E-value=45 Score=37.15 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=43.6
Q ss_pred EECCC-CeEEEEECC----------C-cEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEc
Q 047036 428 ASTGD-GSIVVGSLD----------G-KIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICT 491 (634)
Q Consensus 428 a~s~d-G~IASGS~D----------G-tIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~ 491 (634)
|..+. |-||+...+ . .|++|+..+. ....++=-.+.|.++.|+.+.+.|+-..|++++++|.
T Consensus 35 a~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 35 AVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK--LLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDL 108 (410)
T ss_pred EEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC--EeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeC
Confidence 34443 366666544 2 5999998763 3444432227999999999877666699999999997
No 409
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=55.84 E-value=3e+02 Score=29.78 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC-CCceEEecccCCCCc
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD-RSGIVQNMVKGDSPV 409 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~-~~~~Vq~l~gh~s~V 409 (634)
.-+.||..|. .|..++-+.+|-..-| -++||||+| .+.++=+..+.|..++... ...+ . ....
T Consensus 141 ~~G~lyr~~p-~g~~~~l~~~~~~~~N--Gla~SpDg~-------tly~aDT~~~~i~r~~~d~~~g~~-~-----~~~~ 204 (307)
T COG3386 141 PTGSLYRVDP-DGGVVRLLDDDLTIPN--GLAFSPDGK-------TLYVADTPANRIHRYDLDPATGPI-G-----GRRG 204 (307)
T ss_pred CcceEEEEcC-CCCEEEeecCcEEecC--ceEECCCCC-------EEEEEeCCCCeEEEEecCcccCcc-C-----Ccce
Confidence 3457888887 4788777776533222 349999943 2444545669999997752 1100 0 0000
Q ss_pred cccccccccccCcceEEEEECCCCeEEEEECC-C-cEEEEeccccccccccccCCCCCeEEEEEC-CCCCEEEE
Q 047036 410 LHWTQGHQFSRGTNFQCFASTGDGSIVVGSLD-G-KIRLYSKTSMRQAKTAFPGLGSPITHVDVT-YDGKWILG 480 (634)
Q Consensus 410 ~~~~~g~~y~~~~~fssva~s~dG~IASGS~D-G-tIRLWD~~t~r~akt~L~GH~d~ItsVdfS-pDGk~LlS 480 (634)
.... ...... --.++...+|.|-++... | .|..|+..+ + ....+.-....+++++|= |+++.|..
T Consensus 205 ~~~~---~~~~G~-PDG~~vDadG~lw~~a~~~g~~v~~~~pdG-~-l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 205 FVDF---DEEPGL-PDGMAVDADGNLWVAAVWGGGRVVRFNPDG-K-LLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred EEEc---cCCCCC-CCceEEeCCCCEEEecccCCceEEEECCCC-c-EEEEEECCCCCCccceEeCCCcCEEEE
Confidence 0000 000000 123456778866644444 3 999999884 3 333222222567788875 77787765
No 410
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=52.67 E-value=3.4e+02 Score=30.42 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=37.3
Q ss_pred EEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEE---EcCCcEEEE
Q 047036 436 VVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG---TTDTYLILI 489 (634)
Q Consensus 436 ASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS---S~D~tIrLW 489 (634)
..|..+|.+--||..+. ..+..+.++.-+ ++|++||||.+++. ++-...|.|
T Consensus 193 l~g~~~GRl~~YD~~tK-~~~VLld~L~F~-NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTK-VTKVLLDGLYFP-NGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred ecCCCccceEEecCccc-chhhhhhccccc-ccccCCCCCCEEEEEeeccceeeeeE
Confidence 44556677778998873 466677776654 99999999999885 344555666
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.61 E-value=3.6e+02 Score=29.54 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=63.0
Q ss_pred EEEEeCCCCcEEE--------EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeC-----CCeEEEEEcCCCCceEEe
Q 047036 335 VQQLDIETGKIVT--------EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLD-----DNRLCQWDMRDRSGIVQN 401 (634)
Q Consensus 335 IrlWDleTGK~V~--------~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~-----D~tIklWD~R~~~~~Vq~ 401 (634)
.++.|..+++.+. -|-||. .|||| |.+|+..=. -+.|-++|.|.+-..|-.
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG--------vfs~d--------G~~LYATEndfd~~rGViGvYd~r~~fqrvgE 156 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG--------VFSPD--------GRLLYATENDFDPNRGVIGVYDAREGFQRVGE 156 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc--------ccCCC--------CcEEEeecCCCCCCCceEEEEecccccceecc
Confidence 4455555555444 355664 68998 667776533 478899999854233333
Q ss_pred cccCCCCccccccccccccCcceEEEEECCCC-eEEEEEC------------------CCcEEEEeccccc-ccccccc-
Q 047036 402 MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSL------------------DGKIRLYSKTSMR-QAKTAFP- 460 (634)
Q Consensus 402 l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~------------------DGtIRLWD~~t~r-~akt~L~- 460 (634)
+..|.= --.-+...+|| .||++.. .-.+-|-|..+++ ..|.+||
T Consensus 157 ~~t~Gi---------------GpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~ 221 (366)
T COG3490 157 FSTHGI---------------GPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA 221 (366)
T ss_pred cccCCc---------------CcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch
Confidence 333321 00123446777 4444421 1233455544432 1234566
Q ss_pred -CCCCCeEEEEECCCCCEEE
Q 047036 461 -GLGSPITHVDVTYDGKWIL 479 (634)
Q Consensus 461 -GH~d~ItsVdfSpDGk~Ll 479 (634)
-+.-.|++|+.-+||+.+.
T Consensus 222 ~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred hhhhcceeeeeeCCCCcEEE
Confidence 5667799999999988543
No 412
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=51.31 E-value=38 Score=29.92 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=33.6
Q ss_pred CCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEE-E-EcCCcEEEEEc
Q 047036 441 DGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWIL-G-TTDTYLILICT 491 (634)
Q Consensus 441 DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~Ll-S-S~D~tIrLWD~ 491 (634)
-|.|-.||.. ..+....|...| ++|.+|||+++|. | +....|.++..
T Consensus 35 ~~~Vvyyd~~---~~~~va~g~~~a-NGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 35 WGNVVYYDGK---EVKVVASGFSFA-NGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CceEEEEeCC---EeEEeeccCCCC-ceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 3555667743 245555565544 8999999999985 4 78999999874
No 413
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=51.10 E-value=28 Score=24.52 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.0
Q ss_pred CCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 464 SPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
..|.+|+.++. |++. |.-++|||+
T Consensus 2 E~i~aia~g~~--~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDS--WVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCC--EEEEEeCCCeEEec
Confidence 46888988876 8887 888999997
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=50.85 E-value=83 Score=32.13 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccc--cccccccCcceEEEEECCCCeEEEEECCCcEEEEecc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWT--QGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~--~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~ 450 (634)
++.++.-..+|.+++||+..++.++.... -.+++.-. .+. .....+..+..+.+|..++.=.+|....|+..
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~S--i~pll~~~~~~~~--~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVS--IAPLLNSSPVSDK--SSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCcc--HHHHhcccccccC--CCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 56788889999999999998654322200 01222100 000 23455677777888864444446888999853
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=49.73 E-value=4.2e+02 Score=29.73 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=48.3
Q ss_pred ceEEEEECCCCeEEEEECCCcEEEEeccccccccc--cccCCCCCeEEEEECCCCCEEEEEcCCcEEEE
Q 047036 423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKT--AFPGLGSPITHVDVTYDGKWILGTTDTYLILI 489 (634)
Q Consensus 423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt--~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLW 489 (634)
.+..+.+.+++.++.++..|.|....-. ++.=.. .-.+...+++.|.|.++++..+++.++.|+-|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~D~-G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRSTDG-GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeCCC-CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 4678888889988888899988877633 221011 11344567899999999999999999988765
No 416
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=48.65 E-value=1.1e+02 Score=35.21 Aligned_cols=157 Identities=12% Similarity=0.132 Sum_probs=89.0
Q ss_pred ccccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcE-EEEEeccCCCcceeEEEEecCCCCC------C-CC
Q 047036 302 GSNSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKI-VTEWKFEKDGTDITMRDITNDTKSS------Q-LD 373 (634)
Q Consensus 302 g~~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~-V~~lkgH~~~V~I~vvsfsPd~K~~------q-~~ 373 (634)
++-|+|.+.++..+|++.+..-.. .++.+.++..... ++++- +-+|..-.. + +.
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-------~~~~v~~L~~r~l~~rkl~-----------~dspg~~~~~Vte~l~lL~ 278 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-------SELVVALLDKRSLQIRKLV-----------DDSPGDSRHQVTEQLYLLS 278 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-------CeEEEEeecccccchhhhh-----------hcCCCchHHHHHHHHHHHh
Confidence 566888888888888886554332 2566776653221 12221 112210000 0 12
Q ss_pred CCCEEEEEeCCCeEEEE-EcCCCCceEEecccCCCCccccccccccc-cCcceEEEEECCCC---eEEEEECCCcEEEEe
Q 047036 374 PSESTFLGLDDNRLCQW-DMRDRSGIVQNMVKGDSPVLHWTQGHQFS-RGTNFQCFASTGDG---SIVVGSLDGKIRLYS 448 (634)
Q Consensus 374 ~g~~laSGS~D~tIklW-D~R~~~~~Vq~l~gh~s~V~~~~~g~~y~-~~~~fssva~s~dG---~IASGS~DGtIRLWD 448 (634)
+|-.+..++.|+-|-.| |+|..... .+. | +- .++ ....+..+ .|+. -+++=+..|++.++-
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p--~l~-h---~R------~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~ 344 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQP--HLN-H---IR------NFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFY 344 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCC--cce-e---ee------ccccCcccceee--ccccccceEEEEcCCCceeeee
Confidence 24578889999999999 88754331 110 0 00 000 00111211 2322 267788899999988
Q ss_pred ccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 449 KTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 449 ~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
...-+ .-.+...-+.+..+++||.+.+|++-..+.|+++.+.
T Consensus 345 st~~~--~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~ 386 (733)
T COG4590 345 STSEK--LLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLE 386 (733)
T ss_pred cccCc--ceehhhhhcCcceeeeCcccchheeecCCceEEEEec
Confidence 54321 1223334456788999999999999777888888653
No 417
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=48.12 E-value=2.4e+02 Score=30.22 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=36.9
Q ss_pred ceEEEEECCCCeEEEEE-CC------CcEEEEecccccccccc--ccC-------------CCCCeEEEEECCCCCEEEE
Q 047036 423 NFQCFASTGDGSIVVGS-LD------GKIRLYSKTSMRQAKTA--FPG-------------LGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 423 ~fssva~s~dG~IASGS-~D------GtIRLWD~~t~r~akt~--L~G-------------H~d~ItsVdfSpDGk~LlS 480 (634)
+.-++++.++|.+.+++ .+ ..|+-+|..+ + .... +|. ....+-+|+++|||+.|.+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G-~-~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG-R-VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC-c-ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 45577777777555554 44 5899999763 3 2222 232 2245779999999996665
Q ss_pred Ec
Q 047036 481 TT 482 (634)
Q Consensus 481 S~ 482 (634)
.+
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 33
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=48.04 E-value=2.5e+02 Score=32.27 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=18.8
Q ss_pred CCeEEEEECCCCCEEEEE--cCCcEEEEEcc
Q 047036 464 SPITHVDVTYDGKWILGT--TDTYLILICTL 492 (634)
Q Consensus 464 d~ItsVdfSpDGk~LlSS--~D~tIrLWD~~ 492 (634)
.-|+.|.+|.|.|||-.| ..+.||.+|+.
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 458999999999999875 49999999975
No 419
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=47.55 E-value=42 Score=40.42 Aligned_cols=64 Identities=25% Similarity=0.248 Sum_probs=41.5
Q ss_pred eEEEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 424 FQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 424 fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
.+++.+.|+| .+++|+.||.|+||+....|+.+ +-...-|-..+.|+.-|-+.+ |.|..++-|-
T Consensus 17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk--i~~~~~p~~nlv~tnhgl~~~-tsdrr~la~~ 81 (1636)
T KOG3616|consen 17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK--ICEEAKPKENLVFTNHGLVTA-TSDRRALAWK 81 (1636)
T ss_pred eeeeeecCCCceEEEEecCCcEEEEeecccchhh--hhhhcCCccceeeeccceEEE-eccchhheee
Confidence 4566777888 79999999999999987643221 212334555666776664322 5566666664
No 420
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=47.45 E-value=1.4e+02 Score=38.30 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=21.2
Q ss_pred CCCCCeEEEEECCCCCEEEE-EcCCcEEEE
Q 047036 461 GLGSPITHVDVTYDGKWILG-TTDTYLILI 489 (634)
Q Consensus 461 GH~d~ItsVdfSpDGk~LlS-S~D~tIrLW 489 (634)
+|-..+.+||+||||..+++ +..-.||-.
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rIr~V 688 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRIRKV 688 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhhhhh
Confidence 45667889999999998888 655555444
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=46.21 E-value=1.3e+02 Score=33.97 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEe----cCCC-----CCCCCCC----CEEEEEeCCCeEEEEEcCCCCc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDIT----NDTK-----SSQLDPS----ESTFLGLDDNRLCQWDMRDRSG 397 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfs----Pd~K-----~~q~~~g----~~laSGS~D~tIklWD~R~~~~ 397 (634)
+-|.|+|+.+|.+|+-|||-.+.- +.|- +..+ ....... -+++-+-.-+.|-+|.+|.+.+
T Consensus 329 GRV~LiD~~~~~vvrmWKGYRdAq----c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 329 GRVLLIDVARGIVVRMWKGYRDAQ----CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred CcEEEEECCCChhhhhhccCccce----EEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEEEecCCCCE
Confidence 789999999999999999988742 2332 1110 0000000 1344556789999999988654
No 422
>PRK10115 protease 2; Provisional
Probab=46.19 E-value=2.2e+02 Score=34.05 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=59.7
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeC-----CCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLD-----DNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG 433 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~-----D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG 433 (634)
....++|| +++|+.+.+ ..+|++-|+.++.-+...+. ...+ .+++++||
T Consensus 130 ~~~~~Spd--------g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-----------------~~~~-~~~w~~D~ 183 (686)
T PRK10115 130 GGMAITPD--------NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-----------------NVEP-SFVWANDS 183 (686)
T ss_pred eEEEECCC--------CCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-----------------Ccce-EEEEeeCC
Confidence 34477888 456665433 35677888876531111111 1122 36777776
Q ss_pred -eEEEEECC------CcEEEEeccccc-cccccccCCCCCe-EEEEECCCCCEEEE-E---cCCcEEEEEc
Q 047036 434 -SIVVGSLD------GKIRLYSKTSMR-QAKTAFPGLGSPI-THVDVTYDGKWILG-T---TDTYLILICT 491 (634)
Q Consensus 434 -~IASGS~D------GtIRLWD~~t~r-~akt~L~GH~d~I-tsVdfSpDGk~LlS-S---~D~tIrLWD~ 491 (634)
.|+....+ ..|+++++.+.. .....+.+-.... .++..+.||+||+. + .++.+.|+++
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 45544432 368888887652 1223343322223 36677779999875 3 3567888885
No 423
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=45.57 E-value=7.3e+02 Score=31.34 Aligned_cols=133 Identities=11% Similarity=0.142 Sum_probs=81.7
Q ss_pred CCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccc
Q 047036 332 APGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 332 ~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~ 411 (634)
++.||++|-. -.+.+|....+. ++...+.+ ..+++.++.+..++.-++...+ ++... |
T Consensus 469 s~~iRl~ss~--~~~~~W~~p~~~---ti~~~~~n--------~sqVvvA~~~~~l~y~~i~~~~--l~e~~-~------ 526 (1096)
T KOG1897|consen 469 SNSIRLVSSA--GLRSEWRPPGKI---TIGVVSAN--------ASQVVVAGGGLALFYLEIEDGG--LREVS-H------ 526 (1096)
T ss_pred cccEEEEcch--hhhhcccCCCce---EEEEEeec--------ceEEEEecCccEEEEEEeeccc--eeeee-e------
Confidence 3579999965 357889887763 33333333 3589999999999998887544 12211 1
Q ss_pred cccccccccCcceEEEEECCC----C---eEEEEECCCcEEEEecc--ccccccccccC--CCCCeEEEEECCCCCEEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGD----G---SIVVGSLDGKIRLYSKT--SMRQAKTAFPG--LGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~d----G---~IASGS~DGtIRLWD~~--t~r~akt~L~G--H~d~ItsVdfSpDGk~LlS 480 (634)
+. ..+.+.|+-++|- . .+|+|.++.++++--.. ..-.++..+++ .--.|.-..|=-|+.||++
T Consensus 527 ----~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv 600 (1096)
T KOG1897|consen 527 ----KE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLV 600 (1096)
T ss_pred ----he--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEE
Confidence 11 2345678777742 2 58999888877654321 10012222322 2234666777788999998
Q ss_pred -EcCCcEEEEEcc
Q 047036 481 -TTDTYLILICTL 492 (634)
Q Consensus 481 -S~D~tIrLWD~~ 492 (634)
.-|+.+.-+-..
T Consensus 601 algdG~l~~fv~d 613 (1096)
T KOG1897|consen 601 ALGDGALLYFVLD 613 (1096)
T ss_pred EcCCceEEEEEEE
Confidence 789998877544
No 424
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=44.94 E-value=1.3e+02 Score=32.73 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=35.0
Q ss_pred EEEEECCCCeEEEEECCCcEEEEecccc-----c--cccccccC----CCCCeEEEEECCCCCEEEE
Q 047036 425 QCFASTGDGSIVVGSLDGKIRLYSKTSM-----R--QAKTAFPG----LGSPITHVDVTYDGKWILG 480 (634)
Q Consensus 425 ssva~s~dG~IASGS~DGtIRLWD~~t~-----r--~akt~L~G----H~d~ItsVdfSpDGk~LlS 480 (634)
..+++.++| |.+++....+|+.|..+. + .....++. +...+.+|.|.|||+..++
T Consensus 75 ~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 75 TGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred cceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence 567778888 666777766666665321 0 11122432 2345789999999988777
No 425
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=44.67 E-value=99 Score=28.02 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=51.3
Q ss_pred eEEeeccccceeeeeeccCCCCCCCCCchhhhccCccccceEEEEecc----e--eeeeeccccCcccccccceEEEE-e
Q 047036 88 KWVISDKLTSYSFVRTNKINGGNDSDDDEEESEKGVLGDGFWVLKVGS----K--VRAKVSTEMQLKMFGDQRRIDFV-D 160 (634)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~----~--~~~~v~~~~~~~~~~~~~~~~f~-~ 160 (634)
+|+.+.....-.|++-+ +. -.||+-|++- + +...|-++|.+. +.+-.|. |
T Consensus 22 ~W~~~~~gg~~~~~~~~---------------~~----~~~~~ri~~~~~~~~vv~e~ely~~~~y~----~~~~~Fh~f 78 (106)
T smart00461 22 KWVPTGEGGAANLVIDK---------------NQ----RSYFFRIVGIKGQDKVIWNQELYKNFKYN----QATPTFHQW 78 (106)
T ss_pred CeEECCCCCEEEEEEEe---------------cC----CeEEEEEEEecCCCeEEEEEeccCCCEEe----ecCCceEEE
Confidence 49998876567777721 01 1467777543 2 566777766654 3444444 2
Q ss_pred ---CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036 161 ---KGVWALKFFSDSEYRKFVTEFQDRL 185 (634)
Q Consensus 161 ---~~~w~lkF~~~~~~~~F~~~~~~~l 185 (634)
++.|-|-|.+.++-.+|..+.++|+
T Consensus 79 ~~~~~~~GLnF~se~EA~~F~~~v~~~~ 106 (106)
T smart00461 79 ADDKCVYGLNFASEEEAKKFRKKVLKAL 106 (106)
T ss_pred EeCCeEEEeecCCHHHHHHHHHHHHhcC
Confidence 3599999999999999999998875
No 426
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=44.03 E-value=5.1e+02 Score=29.07 Aligned_cols=68 Identities=15% Similarity=0.030 Sum_probs=45.8
Q ss_pred cceEEEEECCCCeEEEEECCCcEEEEecccccc----cccccc--CCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 422 TNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQ----AKTAFP--GLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 422 ~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~----akt~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
..++++++.++|.|+.++..|.|. |....++. ....++ .-+..|++|.|.+|+..++++..+.|+...
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~ 354 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST 354 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC
Confidence 346788888999888888888874 43322210 011111 122459999999999999999999877764
No 427
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=41.42 E-value=5.6e+02 Score=28.85 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=69.3
Q ss_pred ceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 047036 318 NMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSG 397 (634)
Q Consensus 318 ~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~ 397 (634)
+||+.+..+. ...++++||++|++++-=.+..... .-..++|+ +..++--.+.++|+..|+++.+.
T Consensus 49 kllF~s~~dg----~~nly~lDL~t~~i~QLTdg~g~~~--~g~~~s~~--------~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 49 KLLFASDFDG----NRNLYLLDLATGEITQLTDGPGDNT--FGGFLSPD--------DRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp EEEEEE-TTS----S-EEEEEETTT-EEEE---SS-B-T--TT-EE-TT--------SSEEEEEETTTEEEEEETTT--E
T ss_pred EEEEEeccCC----CcceEEEEcccCEEEECccCCCCCc--cceEEecC--------CCeEEEEECCCeEEEEECCcCcE
Confidence 4555554442 3789999999998776444321211 11255676 45665555678999999998753
Q ss_pred -eEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEEC-----------------------CCcEEEEeccccc
Q 047036 398 -IVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSL-----------------------DGKIRLYSKTSMR 453 (634)
Q Consensus 398 -~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~-----------------------DGtIRLWD~~t~r 453 (634)
+|..+. . .|+. .-....+.++..++|.. .+.|.-=|+.++
T Consensus 115 ~~vy~~p--~----------~~~g---~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG- 178 (386)
T PF14583_consen 115 RVVYEVP--D----------DWKG---YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG- 178 (386)
T ss_dssp EEEEE----T----------TEEE---EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred EEEEECC--c----------cccc---ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-
Confidence 233322 1 1110 01111234554444331 112333344454
Q ss_pred cccccccCCCCCeEEEEECCCCCEEEE-Ec----CCc-EEEEEcc
Q 047036 454 QAKTAFPGLGSPITHVDVTYDGKWILG-TT----DTY-LILICTL 492 (634)
Q Consensus 454 ~akt~L~GH~d~ItsVdfSpDGk~LlS-S~----D~t-IrLWD~~ 492 (634)
+.+..+. -..++.++-|||.--.+++ +. +.. -|||=+.
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 2444443 4568889999998888887 54 332 3667544
No 428
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=40.27 E-value=36 Score=23.47 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=18.5
Q ss_pred eEEEEECCCCCEEEE-EcCCcEEE
Q 047036 466 ITHVDVTYDGKWILG-TTDTYLIL 488 (634)
Q Consensus 466 ItsVdfSpDGk~LlS-S~D~tIrL 488 (634)
..+|+++++|+.+++ +....|++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEE
Confidence 478999999999998 77777665
No 429
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=39.79 E-value=7.1 Score=44.57 Aligned_cols=137 Identities=19% Similarity=0.258 Sum_probs=88.8
Q ss_pred eCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcC
Q 047036 314 RGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMR 393 (634)
Q Consensus 314 ~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R 393 (634)
-.+.+|++++.. ..|..+|-. |+.+-+..-....+ ++.-|..+ ...++.+-.-+.+.+||+.
T Consensus 44 ~e~~nlavaca~-------tiv~~YD~a-gq~~le~n~tg~al-----dm~wDkeg-----dvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 44 PEGHNLAVACAN-------TIVIYYDKA-GQVILELNPTGKAL-----DMAWDKEG-----DVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cCCCceehhhhh-------hHHHhhhhh-cceecccCCchhHh-----hhhhcccc-----chhhhhhhcCCCeeechhh
Confidence 345556666654 578888855 77776655444332 44444322 2356677778999999998
Q ss_pred CCCceEEecc--c-CCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEeccccccccccccC-CCCCeEE
Q 047036 394 DRSGIVQNMV--K-GDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPG-LGSPITH 468 (634)
Q Consensus 394 ~~~~~Vq~l~--g-h~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~G-H~d~Its 468 (634)
+.. .+.|. + |+... .+.++.+ .++.|-..|-|+||.-.+-|. ..--| |.-.++.
T Consensus 106 ~ey--tqqLE~gg~~s~sl-----------------l~wsKg~~el~ig~~~gn~viynhgtsR~--iiv~Gkh~RRgtq 164 (615)
T KOG2247|consen 106 SEY--TQQLESGGTSSKSL-----------------LAWSKGTPELVIGNNAGNIVIYNHGTSRR--IIVMGKHQRRGTQ 164 (615)
T ss_pred hhh--HHHHhccCcchHHH-----------------HhhccCCccccccccccceEEEeccchhh--hhhhcccccceeE
Confidence 643 13332 1 11111 2345555 678888999999999665431 12236 9999999
Q ss_pred EEECCCCCEEEEEcCCcEEEE
Q 047036 469 VDVTYDGKWILGTTDTYLILI 489 (634)
Q Consensus 469 VdfSpDGk~LlSS~D~tIrLW 489 (634)
+++.+.++-++.+||.+|-.-
T Consensus 165 ~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 165 IAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred EEecccceeeecCcHHHHHHh
Confidence 999999998888999887554
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=39.56 E-value=5.2e+02 Score=27.89 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=42.0
Q ss_pred cceEEEEECCCCeEEEEECCCcEEEEecccccccc-cccc--CCCCCeEEEEECCCCCEEEEEcCCcEEE
Q 047036 422 TNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAK-TAFP--GLGSPITHVDVTYDGKWILGTTDTYLIL 488 (634)
Q Consensus 422 ~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~ak-t~L~--GH~d~ItsVdfSpDGk~LlSS~D~tIrL 488 (634)
..+.++++.+++.++..+..|.+++=....+..-. ...+ .-...+.+|.|.|+|+.++++.++.|..
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 35678888888876666677888642222222111 1122 1123588999999999888888887653
No 431
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=36.64 E-value=1.3e+02 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.9
Q ss_pred CcEEEEeCCCCcEEEEEeccC
Q 047036 333 PGVQQLDIETGKIVTEWKFEK 353 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~ 353 (634)
++|.++|+.+++++.++....
T Consensus 14 ~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 14 NTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CEEEEEECCCCeEEEEEECCC
Confidence 689999999999999887643
No 432
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=36.53 E-value=2.2e+02 Score=30.70 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=40.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccc
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r 453 (634)
+..++.++.++.|+-.|+.+... + |+..... ....+++-.+-.+|.|++|+.+|.+..+|..++.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~-~------------W~~~~~~-~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~ 132 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLV-K------------WSYPLLG-AVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT 132 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcE-E------------ecccCcC-cceeccCceEEeCCeEEEecccceEEEEECCCCc
Confidence 35788889999999999987642 1 1110000 0011222222338899999999988888885553
No 433
>PHA03098 kelch-like protein; Provisional
Probab=36.15 E-value=5.5e+02 Score=29.10 Aligned_cols=68 Identities=9% Similarity=0.133 Sum_probs=35.4
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCCcEEEE--EeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-----CeEE
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTE--WKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-----NRLC 388 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~--lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIk 388 (634)
+..+++.|+.+........+..+|+.+++...- +...... ..++.+ + +.+.+.|+.+ +++.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~--~~~~~~--~--------~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN--PGVTVF--N--------NRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc--ceEEEE--C--------CEEEEEeCCCCCEecceEE
Confidence 446777777643221223689999988765321 1101111 012121 2 3566677755 4577
Q ss_pred EEEcCCC
Q 047036 389 QWDMRDR 395 (634)
Q Consensus 389 lWD~R~~ 395 (634)
+||+++.
T Consensus 362 ~yd~~~~ 368 (534)
T PHA03098 362 SWKPGES 368 (534)
T ss_pred EEcCCCC
Confidence 8888764
No 434
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=36.05 E-value=2.8e+02 Score=29.68 Aligned_cols=102 Identities=20% Similarity=0.331 Sum_probs=59.4
Q ss_pred CCCcEEEEeCCCCcEEEEEeccCC--Ccc---------------------eeEEEEecCCCCCCCCCCCEEEEEeCCCeE
Q 047036 331 QAPGVQQLDIETGKIVTEWKFEKD--GTD---------------------ITMRDITNDTKSSQLDPSESTFLGLDDNRL 387 (634)
Q Consensus 331 ~~~TIrlWDleTGK~V~~lkgH~~--~V~---------------------I~vvsfsPd~K~~q~~~g~~laSGS~D~tI 387 (634)
.|..+.-.|++||++|-+|..-.- .-. +-++++..+ ..|.+|+|.-.=.+|
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~------~~G~yLiS~R~~~~i 167 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKD------DDGDYLISSRNTSTI 167 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeec------CCccEEEEecccCEE
Confidence 446788999999999999975321 000 112222221 126799999999999
Q ss_pred EEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCe-EEEEECCCcEEEEec
Q 047036 388 CQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSK 449 (634)
Q Consensus 388 klWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~-IASGS~DGtIRLWD~ 449 (634)
.+.|.+++ .++-.|.|.... +|.. .-..++.--+-+ +-.+..+++|.|+|-
T Consensus 168 ~~I~~~tG-~I~W~lgG~~~~--------df~~--~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 168 YKIDPSTG-KIIWRLGGKRNS--------DFTL--PATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EEEECCCC-cEEEEeCCCCCC--------cccc--cCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 99999885 456666543110 1110 000011112222 345578899999994
No 435
>PRK13684 Ycf48-like protein; Provisional
Probab=35.97 E-value=5.9e+02 Score=27.47 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=45.4
Q ss_pred ceEEEEECCCCeEEEEECCCcEEEEeccccccccccc---cCCCCCeEEEEECCCCCEEEEEcCCcEEEEE
Q 047036 423 NFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKTAF---PGLGSPITHVDVTYDGKWILGTTDTYLILIC 490 (634)
Q Consensus 423 ~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt~L---~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD 490 (634)
.+.++++.+++.+.+++.+|.|.. ....++ .-..+ .+.....+.+.|-.+++.++.+..+.|.-++
T Consensus 261 ~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 261 GYLDLAYRTPGEIWAGGGNGTLLV-SKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred ceeeEEEcCCCCEEEEcCCCeEEE-eCCCCC-CCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 467788888887777778887754 333332 11122 2333468899999888988889999988876
No 436
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=35.84 E-value=64 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=40.4
Q ss_pred eEEEEecc---e--eeeeeccccCcccccc-cceEEEEe----Cc-----EEEEEcCChHHHHHHHHHHHHh
Q 047036 128 FWVLKVGS---K--VRAKVSTEMQLKMFGD-QRRIDFVD----KG-----VWALKFFSDSEYRKFVTEFQDR 184 (634)
Q Consensus 128 ~w~~~~g~---~--~~~~v~~~~~~~~~~~-~~~~~f~~----~~-----~w~lkF~~~~~~~~F~~~~~~~ 184 (634)
|-|++... + |.+.|.+.|.+.-... .....|.. ++ .|++||.+.+.-.+|...|.+|
T Consensus 59 ~RivmR~~~~~kv~lN~~i~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 59 VRIVMRRDGVLKVCANHPIFKSMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred EEEEEEECCCceEEeccEecCCcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 56676422 2 8999999999873221 13334432 11 8999999999999999998876
No 437
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=35.52 E-value=2.2e+02 Score=33.32 Aligned_cols=201 Identities=20% Similarity=0.206 Sum_probs=102.4
Q ss_pred EEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCCeEEEEECCCcEEEEeccccccccc
Q 047036 378 TFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSKTSMRQAKT 457 (634)
Q Consensus 378 laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIRLWD~~t~r~akt 457 (634)
+..|...+.+.-.|+.-+ ++|....-|..-|. +|.-...|. -.++.+.|+--|..+..|+ |.+- +-.+.
T Consensus 483 ~~dg~~~~kLykmDIErG-kvveeW~~~ddvvV------qy~p~~kf~--qmt~eqtlvGlS~~svFrI-DPR~-~gNKi 551 (776)
T COG5167 483 YLDGGERDKLYKMDIERG-KVVEEWDLKDDVVV------QYNPYFKFQ--QMTDEQTLVGLSDYSVFRI-DPRA-RGNKI 551 (776)
T ss_pred EecCCCcccceeeecccc-eeeeEeecCCccee------ecCCchhHH--hcCccceEEeecccceEEe-cccc-cCCce
Confidence 345667778888888753 45655543433222 121112222 1245556665566665554 5432 11111
Q ss_pred cccCCCCCe-----EEEEECCCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCc
Q 047036 458 AFPGLGSPI-----THVDVTYDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDN 532 (634)
Q Consensus 458 ~L~GH~d~I-----tsVdfSpDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i 532 (634)
......+.+ .|..-+-.|-..++|..+-|||+|-. |..-.+. .| ..|..+
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-----g~rAKta-------lP-------------~lG~aI 606 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-----GKRAKTA-------LP-------------GLGDAI 606 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhh-----cchhhhc-------Cc-------------ccccce
Confidence 111222233 33444455544444999999999932 2110000 11 113345
Q ss_pred ccccccccccccCCCCceEEEEEcCCeEEEEeChhhhccccc----ccccccCCcceeeEEEeccCCCeee--------e
Q 047036 533 KIHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHE----CYRNQQGLKSCYCYKIVLKDESIVE--------S 600 (634)
Q Consensus 533 ~Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~----~y~~~~~~~~~~~Y~i~~~~~~i~~--------~ 600 (634)
.|.-. |..| .+|.+.+..|+.+=|+. ++-|+.. --++--.-+.+-||.+...++.+.. .
T Consensus 607 k~idv-----ta~G---k~ilaTCk~yllL~d~~-ik~g~~aGr~GF~ksF~~~ekpkpkrLql~PeH~A~i~~~~K~~i 677 (776)
T COG5167 607 KHIDV-----TANG---KHILATCKNYLLLTDVP-IKYGQPAGRDGFLKSFPASEKPKPKRLQLKPEHLAHINTYTKEEI 677 (776)
T ss_pred eeeEe-----ecCC---cEEEEeecceEEEEecc-cccCCccccchhhhcCccccCCCcceeecCHHHHHHHHHhhccCc
Confidence 55533 3335 78988889999999975 3433211 0111112235678888887766543 3
Q ss_pred ccccCccccC-CCCCCCEEEEcCC
Q 047036 601 RFMHDKFAVT-DSPEAPLVVATPM 623 (634)
Q Consensus 601 ~f~~d~f~~~-~~~~~~iivA~~~ 623 (634)
.|-.-+|..| +.++..||-.|--
T Consensus 678 ~FTpAkFnTGIda~E~tIVtStGp 701 (776)
T COG5167 678 DFTPAKFNTGIDASENTIVTSTGP 701 (776)
T ss_pred ccchhhcccccCcccceEEeccCc
Confidence 4767777665 3445566555443
No 438
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=34.24 E-value=5.4e+02 Score=26.56 Aligned_cols=130 Identities=14% Similarity=0.095 Sum_probs=70.6
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEE-cCCCCceEEecccCCCCccc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWD-MRDRSGIVQNMVKGDSPVLH 411 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD-~R~~~~~Vq~l~gh~s~V~~ 411 (634)
..|+.+... |.....+.++. +.--+|+|+ +...+....+...+++- ...+......+.
T Consensus 48 ~~L~~~~~~-~~~~~~~~g~~----l~~PS~d~~--------g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~-------- 106 (253)
T PF10647_consen 48 RSLYVGPAG-GPVRPVLTGGS----LTRPSWDPD--------GWVWTVDDGSGGVRVVRDSASGTGEPVEVD-------- 106 (253)
T ss_pred CEEEEEcCC-CcceeeccCCc----cccccccCC--------CCEEEEEcCCCceEEEEecCCCcceeEEec--------
Confidence 567777654 22223234443 123377776 45666666667777773 333221111111
Q ss_pred cccccccccCcceEEEEECCCC-eEEEEE---CCCcEEEEeccc---c--c---cccccccCCCCCeEEEEECCCCCEEE
Q 047036 412 WTQGHQFSRGTNFQCFASTGDG-SIVVGS---LDGKIRLYSKTS---M--R---QAKTAFPGLGSPITHVDVTYDGKWIL 479 (634)
Q Consensus 412 ~~~g~~y~~~~~fssva~s~dG-~IASGS---~DGtIRLWD~~t---~--r---~akt~L~GH~d~ItsVdfSpDGk~Ll 479 (634)
|... .. .++++..|+|| +||.-. .++.|.+=-+.. + + ......+.....|++|++.++++.++
T Consensus 107 ~~~~----~~-~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 107 WPGL----RG-RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred cccc----CC-ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 0000 11 68999999999 666544 346666654321 1 0 11122335567899999999999887
Q ss_pred E--EcCCcEEE
Q 047036 480 G--TTDTYLIL 488 (634)
Q Consensus 480 S--S~D~tIrL 488 (634)
. +.+..+..
T Consensus 182 ~~~~~~~~~~~ 192 (253)
T PF10647_consen 182 LGRSAGGPVVR 192 (253)
T ss_pred EeCCCCCceeE
Confidence 6 44554443
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=33.67 E-value=36 Score=38.88 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.0
Q ss_pred CCCeEEEEECCCcEEEEeccccc
Q 047036 431 GDGSIVVGSLDGKIRLYSKTSMR 453 (634)
Q Consensus 431 ~dG~IASGS~DGtIRLWD~~t~r 453 (634)
.+.+|++-+.|+++|+||+.+++
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCe
Confidence 45589999999999999999864
No 440
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=33.53 E-value=1.3e+02 Score=33.75 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=33.8
Q ss_pred EECCCC-e-EEEEECCCcEEEE--eccccccccccccCCCCCeEEEEECCCCCEEEE-EcCCcEEEEEcc
Q 047036 428 ASTGDG-S-IVVGSLDGKIRLY--SKTSMRQAKTAFPGLGSPITHVDVTYDGKWILG-TTDTYLILICTL 492 (634)
Q Consensus 428 a~s~dG-~-IASGS~DGtIRLW--D~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlS-S~D~tIrLWD~~ 492 (634)
||+++| + |.++..||.=.|| |+.+++ +.++-.|-++...+..+||+.+.|.= -....|+-.|+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence 568888 4 5566667765555 666652 43333333344557888899998865 555677777765
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=33.25 E-value=99 Score=24.14 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=24.3
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD 394 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~ 394 (634)
.++.|||..-. .++|+-.=.-+.|.++|+|+
T Consensus 4 R~~kFsP~~~~-----~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 4 RCCKFSPEPGG-----NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred EEEEeCCCCCc-----ccEEEEEccCCeEEEEEccc
Confidence 35699987321 26899988999999999995
No 442
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=31.92 E-value=24 Score=41.60 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=46.7
Q ss_pred EEEECCCC-eEEEEECCCcEEEEeccccccccccccCCCCCeEEEEECC-CCCEEEEEcCCcEEEEEcc
Q 047036 426 CFASTGDG-SIVVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTY-DGKWILGTTDTYLILICTL 492 (634)
Q Consensus 426 sva~s~dG-~IASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSp-DGk~LlSS~D~tIrLWD~~ 492 (634)
++|.-.+. .|.+|..-..|+++|++. ++.+.-.--+..|.++.++| .+.|+++..|+-|-+||+.
T Consensus 159 s~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~ 225 (783)
T KOG1008|consen 159 SVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTY 225 (783)
T ss_pred ccccccCcchhhcccccchhhhhhhhh--hhhhhhhhhhhhcccceecCCCCCceeccccCceeeccch
Confidence 45555555 577888888999999753 12221111234678899999 9999999779999999953
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=30.97 E-value=7e+02 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=13.8
Q ss_pred CCCCCeEEEEECCC-CCEEEE--EcCCc
Q 047036 461 GLGSPITHVDVTYD-GKWILG--TTDTY 485 (634)
Q Consensus 461 GH~d~ItsVdfSpD-Gk~LlS--S~D~t 485 (634)
||..+ .+++|.|. |+..++ +.|..
T Consensus 179 GlRN~-~~~~~d~~tg~l~~~d~G~~~~ 205 (331)
T PF07995_consen 179 GLRNP-FGLAFDPNTGRLWAADNGPDGW 205 (331)
T ss_dssp --SEE-EEEEEETTTTEEEEEEE-SSSS
T ss_pred CCCcc-ccEEEECCCCcEEEEccCCCCC
Confidence 34443 47888888 777766 55544
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=30.68 E-value=2.2e+02 Score=32.22 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=53.0
Q ss_pred EEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccC--cceEEEEECCC-C-eE
Q 047036 360 MRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRG--TNFQCFASTGD-G-SI 435 (634)
Q Consensus 360 vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~--~~fssva~s~d-G-~I 435 (634)
.++.+|. +.+.|+.-+=++|.++|+..+ .+|+...|-.+.-..|-+-...... .+.......+. . +|
T Consensus 312 ~i~~sP~--------~~laA~tDslGRV~LiD~~~~-~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 312 SICLSPS--------GRLAAVTDSLGRVLLIDVARG-IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred EEEECCC--------CCEEEEEcCCCcEEEEECCCC-hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4488897 456666555599999999875 3455555443321122211111000 00000001111 1 34
Q ss_pred -EEEECCCcEEEEeccccccccccccCCCCCeEEEEECCCCCEE
Q 047036 436 -VVGSLDGKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWI 478 (634)
Q Consensus 436 -ASGS~DGtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~L 478 (634)
+=+-.-|.|-+|.+++ +..|.++.+.++++.|
T Consensus 383 vIyaprRg~lEvW~~~~-----------g~Rv~a~~v~k~~rLl 415 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQ-----------GPRVAAFNVGKGCRLL 415 (415)
T ss_pred EEEeccCCeEEEEecCC-----------CCEEEEEEeCCCcEEC
Confidence 4478899999999543 4457777777776643
No 445
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=30.40 E-value=1.1e+02 Score=22.21 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.5
Q ss_pred CcEEEEeCCCCcEEEEEecc
Q 047036 333 PGVQQLDIETGKIVTEWKFE 352 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH 352 (634)
+.|+-.|+.||+++-+++.-
T Consensus 10 g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 10 GYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp SEEEEEETTTTSEEEEEESS
T ss_pred CEEEEEECCCCCEEEeeeCC
Confidence 79999999999999887654
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.99 E-value=2.6e+02 Score=35.64 Aligned_cols=143 Identities=11% Similarity=0.073 Sum_probs=81.7
Q ss_pred cceeeEEeCC--cceEEecCCCCCCCCCCcEEEEeCCCCcEE-----EEEeccCCC----cceeEEEEecCCCCCCCCCC
Q 047036 307 PKKALLMRGE--TNMMLMSPLKDGKPQAPGVQQLDIETGKIV-----TEWKFEKDG----TDITMRDITNDTKSSQLDPS 375 (634)
Q Consensus 307 P~~~mL~~~D--~~mllsss~d~~~~~~~TIrlWDleTGK~V-----~~lkgH~~~----V~I~vvsfsPd~K~~q~~~g 375 (634)
|...|....| -.|+++++++ -.|+.+|+++=..- +-|+.|.-. |-...+.+.|.- .
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng------~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-------p 168 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNG------EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-------P 168 (1405)
T ss_pred cceEEEeccCCceEEEEEecCC------ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-------c
Confidence 4443333334 3355555542 58999998753211 123333221 111122445531 1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceEEecccCCCCccccccccccccCcceEEEEECCCC-eEEEEECCCcEEEEecccccc
Q 047036 376 ESTFLGLDDNRLCQWDMRDRSGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSKTSMRQ 454 (634)
Q Consensus 376 ~~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~IASGS~DGtIRLWD~~t~r~ 454 (634)
...+..+.|..|++--+......++.+ -..+..+|++++|.| ++++|-..|+|.=|-... +
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~----------------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l--e 230 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSF----------------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL--E 230 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhccc----------------CcccceeeEEeccccceeeEecCCCeEEEeeccc--c
Confidence 356667777777765543221112221 123456899999999 899999999999998654 2
Q ss_pred ccccccC---C-CCCeEEEEECCCCCEEEE
Q 047036 455 AKTAFPG---L-GSPITHVDVTYDGKWILG 480 (634)
Q Consensus 455 akt~L~G---H-~d~ItsVdfSpDGk~LlS 480 (634)
.+..+++ . ...|.+|++=..-.||+.
T Consensus 231 ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 231 IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 4444442 2 256888888877788875
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=5.1e+02 Score=30.63 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=63.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceEEecccCCC--Cccccccccccc----cCcceEEEEECCCC-eEEEEECCCcEEEEe-
Q 047036 377 STFLGLDDNRLCQWDMRDRSGIVQNMVKGDS--PVLHWTQGHQFS----RGTNFQCFASTGDG-SIVVGSLDGKIRLYS- 448 (634)
Q Consensus 377 ~laSGS~D~tIklWD~R~~~~~Vq~l~gh~s--~V~~~~~g~~y~----~~~~fssva~s~dG-~IASGS~DGtIRLWD- 448 (634)
.++-|-.| .++.||.|...-.+..+.+-.+ .+..-.+.+... ....+.-+..++.| .+|-++.+|.+-++=
T Consensus 54 N~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 54 NVVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred chhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCeeEEEEch
Confidence 45555556 9999999865334455543221 111111111110 12234556778888 788889999876543
Q ss_pred ----ccc----cc---cccc------ccc-CCCCCeEEEEECCCC---CEEEE-EcCCcEEEEEcc
Q 047036 449 ----KTS----MR---QAKT------AFP-GLGSPITHVDVTYDG---KWILG-TTDTYLILICTL 492 (634)
Q Consensus 449 ----~~t----~r---~akt------~L~-GH~d~ItsVdfSpDG---k~LlS-S~D~tIrLWD~~ 492 (634)
..+ ++ .|++ .|. .-.-.+..+++.|+. ..|+- +.|++|||+|..
T Consensus 133 ~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 133 KRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred hhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcEEEEEecC
Confidence 211 10 1111 011 111245677888886 45666 999999999964
No 448
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=27.69 E-value=1.3e+02 Score=27.92 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=35.9
Q ss_pred eeeeeccccCcccccccceEEEE---e-CcEEEEEcCChHHHHHHHHHHHHhH
Q 047036 137 VRAKVSTEMQLKMFGDQRRIDFV---D-KGVWALKFFSDSEYRKFVTEFQDRL 185 (634)
Q Consensus 137 ~~~~v~~~~~~~~~~~~~~~~f~---~-~~~w~lkF~~~~~~~~F~~~~~~~l 185 (634)
+...|.++|.+. +-+-.|. . ..++-|-|.+.++-.+|...+.+||
T Consensus 59 ~e~~l~~~l~y~----k~~p~Fh~w~~~~~v~GLnF~Se~eA~~F~~~v~~Al 107 (111)
T cd01207 59 INCAIVKGLKYN----QATPTFHQWRDARQVYGLNFGSKEDATMFASAMLSAL 107 (111)
T ss_pred EEEEecCCceee----ecCCcceeeecCCeEEeeccCCHHHHHHHHHHHHHHH
Confidence 788888888775 3334444 2 2499999999999999999999997
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.44 E-value=7e+02 Score=30.57 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=38.1
Q ss_pred CcEEEEeccccccccccccCCCCCeEEEEECCCCCEEEEEcCCcEEEEEcc
Q 047036 442 GKIRLYSKTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICTL 492 (634)
Q Consensus 442 GtIRLWD~~t~r~akt~L~GH~d~ItsVdfSpDGk~LlSS~D~tIrLWD~~ 492 (634)
-.|++|+..+ +...+.+=-|+ ++.++.||.|...|+-+.++++++++..
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecc
Confidence 4599999876 43444444566 8899999999887777999999999964
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=25.64 E-value=6.9e+02 Score=30.45 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceEEeccc------C-CCC--ccccccccccccCc--ceEEEEEC--CCC-eEEEEEC
Q 047036 375 SESTFLGLDDNRLCQWDMRDRSGIVQNMVK------G-DSP--VLHWTQGHQFSRGT--NFQCFAST--GDG-SIVVGSL 440 (634)
Q Consensus 375 g~~laSGS~D~tIklWD~R~~~~~Vq~l~g------h-~s~--V~~~~~g~~y~~~~--~fssva~s--~dG-~IASGS~ 440 (634)
.+.|+.|.+||.|.+|-+.. ++..+.. + .+. +.. .+...+ ....+++. ... .||+++.
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~---I~~~i~~~~~~~~~~~~r~~i~P-----~f~~~v~~SaWGLdIh~~~~~rlIAVSsN 185 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTET---IIEAIERFSEDNDSGFSRLKIKP-----FFHLRVGASAWGLDIHDYKKSRLIAVSSN 185 (717)
T ss_pred eeEEEEEecCCeEEEEEHHH---HHHHHHhhccccccccccccCCC-----CeEeecCCceeEEEEEecCcceEEEEecC
Confidence 47999999999999998742 0000000 0 000 000 111111 22345554 444 6899999
Q ss_pred CCcEEEEeccccccccccc--cCCCCCeEEEEECCCC-----C-EEEE-EcCCcEEEEEcc
Q 047036 441 DGKIRLYSKTSMRQAKTAF--PGLGSPITHVDVTYDG-----K-WILG-TTDTYLILICTL 492 (634)
Q Consensus 441 DGtIRLWD~~t~r~akt~L--~GH~d~ItsVdfSpDG-----k-~LlS-S~D~tIrLWD~~ 492 (634)
-..|-||=..........- ..|..-|.+|+|-++. . +|++ +-.+.+.+|++.
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9999998643211011111 1366678888887655 2 7777 789999999874
No 451
>PF15349 DCA16: DDB1- and CUL4-associated factor 16
Probab=24.86 E-value=91 Score=30.48 Aligned_cols=69 Identities=30% Similarity=0.414 Sum_probs=35.7
Q ss_pred CCCcccccccccCCccccccCCCCCccccccccC--CCCcCCCCCCC--CChHHHHHhhccceecccCCCCCCCCCc
Q 047036 1 MGTSQSREDYISDSDYEESESGESSQYDDAQETS--SSSSQSGTKTL--NSLDEVDAKLKSLKLKYSTPQSPNVKNP 73 (634)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (634)
||-..---|.|+.|++|+| +.-.|-....++ ++|....|.-| +-|+-+.=..|-| |||..+-.|...|.
T Consensus 1 mgpr~pspd~lseseseee---~~~nylnes~geewd~se~edpvvpn~t~leslawqvkcl-lkysttwkpl~pns 73 (216)
T PF15349_consen 1 MGPRNPSPDPLSESESEEE---ENANYLNESSGEEWDSSEEEDPVVPNLTPLESLAWQVKCL-LKYSTTWKPLNPNS 73 (216)
T ss_pred CCCCCCCCCcCccchhhhh---hhhhhhhhccccccccccccCCcCCCCchHHHHHHHHHHH-hhcccccccCCcch
Confidence 6766666677887777755 222332111111 12222333333 2355555555554 89988866666564
No 452
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=24.66 E-value=2.3e+02 Score=30.45 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=36.6
Q ss_pred EEEEECCCCeEEEEECCCcEEEEeccccc-cccccc----cCCCCCeEEEEECCC----CCEEEE-Ec
Q 047036 425 QCFASTGDGSIVVGSLDGKIRLYSKTSMR-QAKTAF----PGLGSPITHVDVTYD----GKWILG-TT 482 (634)
Q Consensus 425 ssva~s~dG~IASGS~DGtIRLWD~~t~r-~akt~L----~GH~d~ItsVdfSpD----Gk~LlS-S~ 482 (634)
.++++.|+|.|.++-..|.|++++..+.. .....+ .....-..+|+|+|+ |..-++ +.
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred eEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 46789999988888999999999943321 011112 223345789999995 554455 54
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=24.43 E-value=1.1e+03 Score=27.04 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=34.4
Q ss_pred EEEEECCCCeEEEEEC-CCcEEEEeccccc-cccccccC-----CCCCeEEEEECCCC
Q 047036 425 QCFASTGDGSIVVGSL-DGKIRLYSKTSMR-QAKTAFPG-----LGSPITHVDVTYDG 475 (634)
Q Consensus 425 ssva~s~dG~IASGS~-DGtIRLWD~~t~r-~akt~L~G-----H~d~ItsVdfSpDG 475 (634)
..+++.|+|.|.+... .|.|++++..++. .....++. -..-..+|+|+||=
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4678899998878877 5999999865432 11222331 13457899999984
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=23.46 E-value=1.4e+03 Score=27.79 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCCCCeEEEEEC-------CCCCEEEEEcCCcEEEEEcccccCCCCeeeeecCCCCCCCCCceeEeecCCCccccCCCcc
Q 047036 461 GLGSPITHVDVT-------YDGKWILGTTDTYLILICTLFSDKDGKTKTGFSGRMGNKIPAPRLLKLTPLDSHLAGTDNK 533 (634)
Q Consensus 461 GH~d~ItsVdfS-------pDGk~LlSS~D~tIrLWD~~~~~~~G~~~~gF~gh~~~~~p~pr~L~L~Pe~~~~~g~~i~ 533 (634)
..+.||..|.|+ +..+||+.=..+.+.|....+. +.+ ....+....+-...++.|...+ . +...
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~----~~~-~~~~~~~s~i~~~~l~~i~~~~---t-gg~~ 147 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYH----RVI-SSIRSRPSRIDPNPLLTISSSD---T-GGFP 147 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccc----ccc-ccccCCccccccceeEEechhh---c-CCCc
Confidence 567899999999 2336888855556666654321 100 0000000000111222332211 1 1223
Q ss_pred cccccccccccCCCCceEEEEEcCCeEEEEeChhhhcccccccccccCCcceeeEEEeccCCCe-eeeccccCcc---cc
Q 047036 534 IHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESI-VESRFMHDKF---AV 609 (634)
Q Consensus 534 Ft~a~Fs~~t~~g~~E~~IvtStg~~viiWdl~~v~~~~~~~y~~~~~~~~~~~Y~i~~~~~~i-~~~~f~~d~f---~~ 609 (634)
|.-..||+ ....+..|.-..|+--||++..-.+.+...++ -.....+.| .|..= ++++ .+
T Consensus 148 ~aDv~FnP----~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-----------~~~~~~gsi~~d~~e-~s~w~rI~W 211 (765)
T PF10214_consen 148 HADVAFNP----WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-----------LSRNISGSIIFDPEE-LSNWKRILW 211 (765)
T ss_pred cceEEecc----CccceEEEEeccCcEEEEEeccccccCCccee-----------eccCCCccccCCCcc-cCcceeeEe
Confidence 33444554 12235666677788899999432222222111 111112333 11110 1333 12
Q ss_pred CCCCCCCEEEEcCCceeeeeccC
Q 047036 610 TDSPEAPLVVATPMKVSSISLSG 632 (634)
Q Consensus 610 ~~~~~~~iivA~~~~v~~~~~~~ 632 (634)
..+ ...|||+....+..+.+.+
T Consensus 212 ~~~-~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 212 VSD-SNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cCC-CCEEEEEcCCceEEEECCC
Confidence 222 3689999999998888754
No 455
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=23.46 E-value=67 Score=39.56 Aligned_cols=55 Identities=7% Similarity=0.159 Sum_probs=37.5
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcc---------eeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTD---------ITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRS 396 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~---------I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~ 396 (634)
++|++....+-.+ .-|++|..+|. +-+-.+||| |..++.++.||.++.|.+-.-+
T Consensus 205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpD--------Gtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPD--------GTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCC--------CcEEEEeecCCccceeeeeeec
Confidence 5777766654322 34566876542 223467888 6789999999999999876543
No 456
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=23.33 E-value=5.3e+02 Score=28.85 Aligned_cols=101 Identities=19% Similarity=0.285 Sum_probs=52.4
Q ss_pred eEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEe--cccCCCCccccccccccccCcceEEEEECCCC---
Q 047036 359 TMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQN--MVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG--- 433 (634)
Q Consensus 359 ~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~--l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG--- 433 (634)
++++.|.- ..+|.|..+++|-+.|+|... ++.. +..|... .....|.+...|.-+..-.|+
T Consensus 90 tal~~S~i---------GFvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~----~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 90 TALKNSDI---------GFVAIGYESGSLVVIDLRGPA-VIYNENIRESFLS----KSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEE-BT---------SEEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-----SS----EEEEEEEEEE-TTSSSEE
T ss_pred eEEecCCC---------cEEEEEecCCcEEEEECCCCe-EEeeccccccccc----cccccCeeEEEEEEEecCCCcccc
Confidence 55676643 489999999999999998643 3322 1111000 012233344455554555666
Q ss_pred -eEEEEECCCcEEEEeccc---cc---cccccccCCCCCeEEEE-ECC
Q 047036 434 -SIVVGSLDGKIRLYSKTS---MR---QAKTAFPGLGSPITHVD-VTY 473 (634)
Q Consensus 434 -~IASGS~DGtIRLWD~~t---~r---~akt~L~GH~d~ItsVd-fSp 473 (634)
.+.+|...|.+.+|.+.- ++ +.......|.++|..|. |+.
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~ 203 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINA 203 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEET
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEEC
Confidence 478999999999998651 11 01111124667887776 533
No 457
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=22.86 E-value=1.5e+02 Score=20.21 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.5
Q ss_pred CcEEEEeCCCCcEEEEE
Q 047036 333 PGVQQLDIETGKIVTEW 349 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~l 349 (634)
+.|+..|.++|+++-++
T Consensus 16 g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEEcccCcEEEEc
Confidence 68999999999987654
No 458
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=21.90 E-value=1e+02 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.4
Q ss_pred CCCeEEEEECCCcEEEEecc
Q 047036 431 GDGSIVVGSLDGKIRLYSKT 450 (634)
Q Consensus 431 ~dG~IASGS~DGtIRLWD~~ 450 (634)
.+|+|++++.||.|..+|..
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 36799999999999999964
No 459
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.43 E-value=4.2e+02 Score=27.13 Aligned_cols=61 Identities=7% Similarity=0.188 Sum_probs=43.0
Q ss_pred ccCcceeeEEeCCcceEEecCCCCCCCCCCcEEEEeCCCCcEEEEEeccCCCcceeEEEEecC
Q 047036 304 NSTPKKALLMRGETNMMLMSPLKDGKPQAPGVQQLDIETGKIVTEWKFEKDGTDITMRDITND 366 (634)
Q Consensus 304 ~fsP~~~mL~~~D~~mllsss~d~~~~~~~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd 366 (634)
.++|+.+.+.+.+.=|++.+..-..-+.-+.|++.++.||+.-.-+..+... ..|+++-..
T Consensus 111 k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkk--qQVis~e~~ 171 (200)
T PF15525_consen 111 KYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKK--QQVISAEKN 171 (200)
T ss_pred ccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccc--eeEEEEEEe
Confidence 6899999999887777777765544455688999999999877666554332 234455544
No 460
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=20.71 E-value=1.6e+03 Score=27.36 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=67.0
Q ss_pred EEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCC--C--CceEEecccCCCCccccccccccccCcceEEEEECCCC-eE
Q 047036 361 RDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRD--R--SGIVQNMVKGDSPVLHWTQGHQFSRGTNFQCFASTGDG-SI 435 (634)
Q Consensus 361 vsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~--~--~~~Vq~l~gh~s~V~~~~~g~~y~~~~~fssva~s~dG-~I 435 (634)
|+|+|.. ..++|.--..|...+||+.. + ...++....+.+.+....+ ....+..+++.++- .|
T Consensus 151 v~FnP~~-------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~-----e~s~w~rI~W~~~~~~l 218 (765)
T PF10214_consen 151 VAFNPWD-------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPE-----ELSNWKRILWVSDSNRL 218 (765)
T ss_pred EEeccCc-------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCc-----ccCcceeeEecCCCCEE
Confidence 5899973 35899999999999999921 1 1112222222222201001 11234455666554 67
Q ss_pred EEEECCCcEEEEecccccccc-ccccCCCCCeEEEEECCC--CCEEEEEcCCcEEEEEcc
Q 047036 436 VVGSLDGKIRLYSKTSMRQAK-TAFPGLGSPITHVDVTYD--GKWILGTTDTYLILICTL 492 (634)
Q Consensus 436 ASGS~DGtIRLWD~~t~r~ak-t~L~GH~d~ItsVdfSpD--Gk~LlSS~D~tIrLWD~~ 492 (634)
++++. ..+.++|+.+..... -......+.|..|.-+|+ +..++-|+ +.|...++.
T Consensus 219 Lv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~ 276 (765)
T PF10214_consen 219 LVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVK 276 (765)
T ss_pred EEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEcc
Confidence 77766 567788987643211 112235578999999998 33333333 567777865
No 461
>PHA02713 hypothetical protein; Provisional
Probab=20.40 E-value=1.3e+03 Score=26.86 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=35.6
Q ss_pred CcceEEecCCCCCCCCCCcEEEEeCCCCcEEE--EEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCC-----CeEE
Q 047036 316 ETNMMLMSPLKDGKPQAPGVQQLDIETGKIVT--EWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDD-----NRLC 388 (634)
Q Consensus 316 D~~mllsss~d~~~~~~~TIrlWDleTGK~V~--~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D-----~tIk 388 (634)
++.+++.||.+.+...-+++..+|+.+.+-.. .+...... ..+ + .-+ +.+-+.|+.+ +++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~--~~~-~-~~~--------g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR--FSL-A-VID--------DTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc--eeE-E-EEC--------CEEEEECCcCCCCCCceEE
Confidence 45677777753211123578999998764211 11111111 011 1 112 3566777765 4588
Q ss_pred EEEcCCC
Q 047036 389 QWDMRDR 395 (634)
Q Consensus 389 lWD~R~~ 395 (634)
++|+++.
T Consensus 371 ~Ydp~~~ 377 (557)
T PHA02713 371 CYTMGDD 377 (557)
T ss_pred EEECCCC
Confidence 8999864
No 462
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=20.06 E-value=1.1e+03 Score=25.26 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=64.5
Q ss_pred CcEEEEeCCCCcEEEEEeccCCCcceeEEEEecCCCCCCCCCCCEEEEEeCCCeEEEEEcCCCCceEEecc--cCCCCcc
Q 047036 333 PGVQQLDIETGKIVTEWKFEKDGTDITMRDITNDTKSSQLDPSESTFLGLDDNRLCQWDMRDRSGIVQNMV--KGDSPVL 410 (634)
Q Consensus 333 ~TIrlWDleTGK~V~~lkgH~~~V~I~vvsfsPd~K~~q~~~g~~laSGS~D~tIklWD~R~~~~~Vq~l~--gh~s~V~ 410 (634)
+++.++|..|-+.+.+|.-...+ . -++.| ++.|+......+|+++||.+-.. +..+. ....+|.
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~~EG---W--GLt~d--------g~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYPGEG---W--GLTSD--------GKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVS 175 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-SSS-------EEEEC--------SSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE--
T ss_pred CeEEEEccccceEEEEEecCCcc---e--EEEcC--------CCEEEEECCccceEEECCcccce-EEEEEEEECCEECC
Confidence 79999999999999998765544 2 22345 34566656677999999986432 23332 1112221
Q ss_pred ccccccccccCcceEEEEECCCCeEEEEECCCcEE-EEecccccccccccc---CCCCCeEEEEECCCCCEEEEEcCC
Q 047036 411 HWTQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIR-LYSKTSMRQAKTAFP---GLGSPITHVDVTYDGKWILGTTDT 484 (634)
Q Consensus 411 ~~~~g~~y~~~~~fssva~s~dG~IASGS~DGtIR-LWD~~t~r~akt~L~---GH~d~ItsVdfSpDGk~LlSS~D~ 484 (634)
.-+ .-+|..+ .+.|-.+..+-.+..=-..|.|. .+|+...+.....-. .-.+-.++|++.|.+..|.-|-..
T Consensus 176 ~LN-ELE~i~G-~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 176 NLN-ELEYING-KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp -EE-EEEEETT-EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CcE-eEEEEcC-EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 100 0112111 12222222222223333444433 456554321110001 114668999999988877764443
Done!