BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047037
         (85 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P29938|YCBV_PSEDE Uncharacterized protein in cobV 5'region OS=Pseudomonas
           denitrificans PE=4 SV=1
          Length = 233

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 31  SIKGKSVVILIDSGSTHNSINAEVAQRVNLSP-NANNRLEIMVAFG 75
           ++ GK + +L+D+G+++ ++  E A+++ L P N N  + +M A G
Sbjct: 129 TVDGKDISMLVDTGASNIALTYEDAEKIGLDPANLNFIVTVMTANG 174


>sp|A6VQD4|PURA_ACTSZ Adenylosuccinate synthetase OS=Actinobacillus succinogenes
          (strain ATCC 55618 / 130Z) GN=purA PE=3 SV=1
          Length = 432

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 16 DVARDQVLETMRIQGS--------IKG-KSVVILIDSGSTHNSINAEVAQRVNLSPNA 64
          D+  D+V   +R QG         I G K+V+ LI SG  HN++   +   V LSP+A
Sbjct: 22 DLLTDRVKYVVRYQGGHNAGHTLIINGEKTVLRLIPSGILHNNVTCLIGNGVVLSPSA 79


>sp|Q99MZ6|MYO7B_MOUSE Unconventional myosin-VIIb OS=Mus musculus GN=Myo7b PE=1 SV=3
          Length = 2113

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 34   GKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMV 72
            G+S+ I +DS ST   I   VAQ+  L  N    L++ V
Sbjct: 1203 GRSLTISVDSASTSREICQHVAQKQGLRDNLGFSLQVAV 1241


>sp|Q7TSY8|SGOL2_MOUSE Shugoshin-like 2 OS=Mus musculus GN=Sgol2 PE=1 SV=1
          Length = 1164

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 17/20 (85%)

Query: 42  DSGSTHNSINAEVAQRVNLS 61
           D GSTH+S+N ++ Q+VN+S
Sbjct: 806 DRGSTHDSLNKKLCQKVNIS 825


>sp|A2BM26|OTC_HYPBU Ornithine carbamoyltransferase OS=Hyperthermus butylicus (strain
          DSM 5456 / JCM 9403) GN=argF PE=3 SV=1
          Length = 314

 Score = 29.3 bits (64), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 27 RIQGSIKGKSVVILIDSGSTHNSINAEVAQ-RVNLSPNANNRLEIMVAFGEKLMSSGK 83
          RI   +KGK++ ++ +  ST   ++ EVA  ++  +P    R E+ +A GE +  + +
Sbjct: 40 RIIPMLKGKTIALIFEKPSTRTRVSMEVAALQLGATPLTFRRDELQLARGEPIKDTAR 97


>sp|Q06736|MET2_SACPS Homoserine O-acetyltransferase OS=Saccharomyces pastorianus GN=MET2
           PE=3 SV=1
          Length = 486

 Score = 28.9 bits (63), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 9   TPKISLHDVARDQVLETMRIQGSIKGKSVVILIDS 43
           T K+  HD+ARD+V +  ++  +I+  S++I I S
Sbjct: 366 TRKLDTHDLARDRVEDITKVLSAIEQPSLIIGIQS 400


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.128    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,217,857
Number of Sequences: 539616
Number of extensions: 794606
Number of successful extensions: 2048
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2043
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)