Query 047037
Match_columns 85
No_of_seqs 113 out of 654
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.4 4.3E-13 1.5E-17 88.2 5.2 43 21-63 20-62 (148)
2 2i1a_A DNA damage-inducible pr 99.1 3.8E-11 1.3E-15 77.5 4.9 44 21-64 22-65 (148)
3 3slz_A GAG-Pro-POL polyprotein 97.8 1.2E-05 4.2E-10 51.9 3.0 55 18-78 15-69 (132)
4 1fmb_A EIAV protease; hydrolas 97.8 4.7E-05 1.6E-09 47.3 5.1 38 26-63 9-46 (104)
5 3ec0_A Protease; HIV-2, inhibi 96.7 0.0022 7.5E-08 39.5 4.4 25 27-51 10-34 (99)
6 2hs1_A HIV-1 protease; ultra-h 96.6 0.0029 9.8E-08 38.9 4.1 26 27-52 10-35 (99)
7 2hah_A Protease, retropepsin; 96.1 0.0065 2.2E-07 38.2 3.8 28 24-53 14-41 (116)
8 3ka2_A [L-Ala51;Gly51']HIV-1 p 95.9 0.01 3.4E-07 40.7 4.4 26 26-51 9-34 (203)
9 3sqf_A Protease; folded monome 95.4 0.019 6.3E-07 36.1 4.0 26 27-52 11-36 (114)
10 2rsp_A RSV protease; hydrolase 94.7 0.019 6.6E-07 36.5 2.6 21 32-52 27-47 (124)
11 1lya_A Cathepsin D; lysosomal 93.9 0.14 4.9E-06 30.4 5.2 32 22-53 11-44 (97)
12 3ka2_A [L-Ala51;Gly51']HIV-1 p 93.8 0.081 2.8E-06 36.2 4.4 26 26-51 113-138 (203)
13 3liy_A Protease; hydrolase, hy 91.5 0.16 5.5E-06 32.0 3.0 26 27-52 12-42 (116)
14 1bxo_A Protein (penicillopepsi 89.8 0.5 1.7E-05 33.0 4.8 32 22-53 13-44 (323)
15 1izd_A Aspartic proteinase; su 89.8 0.53 1.8E-05 33.0 4.9 32 22-53 13-44 (323)
16 2apr_A Rhizopuspepsin; hydrola 89.4 0.73 2.5E-05 32.2 5.3 33 21-53 12-46 (325)
17 1b5f_A Protein (cardosin A); h 89.2 0.74 2.5E-05 30.9 5.1 30 23-52 12-43 (239)
18 1ibq_A Aspergillopepsin; aspar 89.2 0.66 2.3E-05 32.4 5.0 32 22-53 12-43 (325)
19 3c9x_A Trichoderma reesei aspa 89.1 1.1 3.8E-05 31.3 6.1 32 22-53 13-46 (329)
20 1oew_A Endothiapepsin; hydrola 88.6 1.2 4.3E-05 31.0 6.1 32 22-53 13-46 (329)
21 1mpp_A Pepsin; hydrolase(acid 87.4 1 3.6E-05 31.7 5.1 32 22-53 16-49 (361)
22 1yg9_A Aspartic protease BLA G 87.3 0.61 2.1E-05 32.7 3.9 30 24-53 17-46 (330)
23 1wkr_A Polyporopepsin; hydrola 87.3 0.9 3.1E-05 31.8 4.7 29 24-52 12-42 (340)
24 1dpj_A Proteinase A; proteinas 87.2 1.1 3.6E-05 31.3 5.0 30 23-52 12-43 (329)
25 2qzx_A Candidapepsin-5; aspart 86.9 1.1 3.7E-05 31.4 4.9 30 23-52 11-42 (342)
26 2qp8_A Beta-secretase 1; BACE1 86.8 1.2 4E-05 31.9 5.1 31 23-53 20-52 (395)
27 3aup_A SBG7S, BG, basic 7S glo 86.6 1.2 4.1E-05 32.0 5.2 32 22-53 19-52 (403)
28 3fv3_A SAPP1P-secreted asparti 86.4 1.1 3.6E-05 31.3 4.7 30 23-52 11-42 (339)
29 1j71_A Candidapepsin, aspartic 86.4 1.1 3.6E-05 31.4 4.7 30 23-52 11-42 (334)
30 2ewy_A Beta-secretase 2; BACE2 86.0 1.4 4.9E-05 31.2 5.2 29 24-52 13-43 (383)
31 1am5_A Pepsin, acid proteinase 85.9 1.6 5.4E-05 30.3 5.3 32 22-53 10-43 (324)
32 3cms_A Chymosin B; hydrolase, 85.9 1.5 5.2E-05 30.5 5.2 30 23-52 13-44 (323)
33 3vf3_A Beta-secretase 1; struc 85.5 1.5 5.2E-05 31.3 5.2 30 23-52 27-58 (402)
34 3pvk_A Candidapepsin-2; hydrol 85.4 1.3 4.4E-05 30.8 4.7 30 23-52 11-42 (342)
35 1htr_B Gastricsin; aspartyl pr 84.8 1.6 5.5E-05 30.4 5.0 32 22-53 10-43 (329)
36 3k1w_A Renin; protease, altern 84.2 1.9 6.5E-05 29.9 5.1 31 23-53 17-49 (341)
37 4aa9_A Chymosin; hydrolase, as 84.0 1.3 4.3E-05 30.7 4.1 30 23-52 10-41 (320)
38 1b5f_A Protein (cardosin A); h 83.9 1.1 3.8E-05 30.0 3.6 29 30-58 197-232 (239)
39 2bju_A Plasmepsin II; aspartic 83.5 2 6.9E-05 31.9 5.2 31 23-53 137-169 (453)
40 2x0b_A Renin; hydrolase-hormon 82.5 2.1 7.1E-05 30.9 4.9 31 23-53 60-92 (383)
41 3lpj_A Beta-secretase 1; alzhe 82.3 2.1 7.2E-05 31.3 4.9 29 24-52 74-104 (455)
42 3qvc_A Histo-aspartic protease 81.2 2.1 7.3E-05 31.7 4.6 31 23-53 136-168 (451)
43 3cms_A Chymosin B; hydrolase, 81.2 2 6.7E-05 29.9 4.2 29 30-58 198-232 (323)
44 1tzs_A Cathepsin E; hydrolase, 80.8 1.7 5.7E-05 30.6 3.8 31 23-53 22-54 (351)
45 1qdm_A Prophytepsin; aspartic 80.1 2.5 8.5E-05 31.5 4.6 30 23-52 51-82 (478)
46 3aup_A SBG7S, BG, basic 7S glo 80.0 1.7 5.8E-05 31.2 3.6 20 39-58 262-281 (403)
47 1wkr_A Polyporopepsin; hydrola 79.4 2.2 7.4E-05 29.8 3.9 29 30-58 195-228 (340)
48 1izd_A Aspartic proteinase; su 79.3 1.1 3.6E-05 31.4 2.3 25 34-58 206-230 (323)
49 1bxo_A Protein (penicillopepsi 78.8 1.1 3.8E-05 31.2 2.3 24 35-58 206-229 (323)
50 3psg_A Pepsinogen; hydrolase(a 78.6 2.8 9.7E-05 29.9 4.4 31 23-53 55-87 (370)
51 3pvk_A Candidapepsin-2; hydrol 78.4 2.8 9.4E-05 29.1 4.2 28 31-58 202-234 (342)
52 3vla_A EDGP; extracellular, in 78.2 5.6 0.00019 28.9 6.0 37 16-52 12-50 (413)
53 2qzx_A Candidapepsin-5; aspart 78.1 2.8 9.6E-05 29.2 4.2 28 31-58 203-234 (342)
54 1dpj_A Proteinase A; proteinas 77.9 2.9 0.0001 29.0 4.2 28 31-58 202-234 (329)
55 4aa9_A Chymosin; hydrolase, as 77.3 2.6 9E-05 29.0 3.9 22 37-58 208-229 (320)
56 3fv3_A SAPP1P-secreted asparti 77.3 2.2 7.6E-05 29.6 3.5 22 37-58 215-236 (339)
57 1t6e_X Xylanase inhibitor; two 76.9 1.9 6.5E-05 30.8 3.1 27 30-56 213-249 (381)
58 1vd2_A Protein kinase C, IOTA 76.9 7 0.00024 23.1 5.1 51 22-74 3-53 (89)
59 1yg9_A Aspartic protease BLA G 76.8 2.7 9.4E-05 29.3 3.9 29 30-58 202-235 (330)
60 1mpp_A Pepsin; hydrolase(acid 76.7 2.8 9.7E-05 29.4 3.9 29 30-58 218-253 (361)
61 2ewy_A Beta-secretase 2; BACE2 76.5 1.7 5.8E-05 30.8 2.7 29 30-58 204-242 (383)
62 1tzs_A Cathepsin E; hydrolase, 76.3 3.4 0.00011 29.1 4.2 29 30-58 210-244 (351)
63 1lya_B Cathepsin D; lysosomal 76.3 1.9 6.5E-05 28.6 2.8 22 37-58 121-142 (241)
64 1j71_A Candidapepsin, aspartic 76.3 3.4 0.00012 28.8 4.2 28 31-58 203-234 (334)
65 2jys_A Protease/reverse transc 76.2 4.1 0.00014 24.9 3.9 46 28-77 10-55 (107)
66 3k1w_A Renin; protease, altern 75.3 3.8 0.00013 28.4 4.2 22 37-58 221-242 (341)
67 1miq_A Plasmepsin; aspartic pr 74.9 1.4 4.9E-05 31.5 2.0 31 23-53 61-93 (375)
68 1am5_A Pepsin, acid proteinase 73.8 3 0.0001 28.9 3.4 28 31-58 198-230 (324)
69 2qp8_A Beta-secretase 1; BACE1 73.6 2.2 7.4E-05 30.5 2.7 29 30-58 215-253 (395)
70 1htr_B Gastricsin; aspartyl pr 73.5 1.9 6.6E-05 29.9 2.3 22 37-58 212-233 (329)
71 2apr_A Rhizopuspepsin; hydrola 72.7 1.5 5.1E-05 30.6 1.6 25 36-60 212-240 (325)
72 3vf3_A Beta-secretase 1; struc 72.6 2.4 8.1E-05 30.3 2.7 28 31-58 223-260 (402)
73 1oew_A Endothiapepsin; hydrola 71.0 3.9 0.00013 28.4 3.5 23 36-58 212-234 (329)
74 1ibq_A Aspergillopepsin; aspar 70.6 2.7 9.2E-05 29.2 2.5 23 36-58 208-230 (325)
75 3lpj_A Beta-secretase 1; alzhe 70.6 2.7 9.3E-05 30.7 2.6 28 31-58 269-306 (455)
76 1miq_A Plasmepsin; aspartic pr 69.2 10 0.00035 27.0 5.4 29 30-58 247-278 (375)
77 3c9x_A Trichoderma reesei aspa 68.8 3.1 0.00011 29.0 2.5 24 35-58 212-235 (329)
78 3vla_A EDGP; extracellular, in 66.2 4.9 0.00017 29.2 3.2 18 39-56 268-285 (413)
79 1wh3_A 59 kDa 2'-5'-oligoadeny 64.8 15 0.00051 20.2 4.6 43 21-63 3-46 (87)
80 4b0m_A F1 capsule-anchoring pr 62.7 18 0.00062 22.4 5.1 48 19-66 25-81 (136)
81 3qvc_A Histo-aspartic protease 62.4 6.3 0.00022 29.2 3.2 25 35-59 330-354 (451)
82 3v6c_B Ubiquitin; structural g 60.1 9.5 0.00033 21.5 3.2 46 19-64 11-57 (91)
83 1wgg_A Ubiquitin carboxyl-term 59.8 23 0.00077 20.4 5.4 43 22-64 4-47 (96)
84 1t6e_X Xylanase inhibitor; two 59.3 11 0.00037 26.7 3.9 29 20-51 10-38 (381)
85 3sk3_A Acetate kinase, acetoki 58.8 3.1 0.0001 31.1 1.0 37 44-80 198-234 (415)
86 2iir_A Acetate kinase; transfe 58.7 2.5 8.5E-05 31.5 0.5 37 44-80 180-216 (403)
87 3psg_A Pepsinogen; hydrolase(a 58.5 5.2 0.00018 28.5 2.2 22 37-58 254-275 (370)
88 2bju_A Plasmepsin II; aspartic 57.7 9.4 0.00032 28.3 3.5 24 36-59 332-355 (453)
89 2dzi_A Ubiquitin-like protein 57.1 14 0.00048 19.9 3.4 43 22-64 4-47 (81)
90 3o27_A Putative uncharacterize 56.5 19 0.00067 20.3 3.9 36 49-84 28-63 (68)
91 1g99_A Acetate kinase; alpha/b 56.4 2.6 9E-05 31.4 0.3 37 44-80 181-217 (408)
92 2x0b_A Renin; hydrolase-hormon 56.3 7 0.00024 28.1 2.6 22 37-58 264-285 (383)
93 1v86_A DNA segment, CHR 7, way 56.1 26 0.0009 20.0 4.8 42 23-64 15-56 (95)
94 2e1z_A Propionate kinase; TDCD 55.7 3.2 0.00011 31.0 0.7 37 44-80 189-225 (415)
95 4dwf_A HLA-B-associated transc 55.3 24 0.00081 19.6 4.3 42 23-64 3-45 (90)
96 1v5t_A 8430435I17RIK protein; 54.3 8.6 0.0003 21.9 2.3 42 23-64 5-47 (90)
97 2kd0_A LRR repeats and ubiquit 53.6 26 0.00091 19.5 4.3 43 22-64 9-51 (85)
98 4eew_A Large proline-rich prot 53.5 23 0.00079 19.5 4.1 44 21-64 13-57 (88)
99 1qdm_A Prophytepsin; aspartic 53.4 8.1 0.00028 28.7 2.5 22 37-58 254-275 (478)
100 4h0p_A Acetate kinase; askha ( 52.8 4.4 0.00015 30.6 1.0 37 44-80 193-229 (438)
101 3r9p_A ACKA; ssgcid, seattle s 51.7 3.8 0.00013 30.4 0.5 37 44-80 174-210 (391)
102 3dbh_I NEDD8; cell cycle, acti 50.4 19 0.00065 19.7 3.3 43 22-64 9-52 (88)
103 4ijn_A Acetate kinase, acetoki 48.4 4.6 0.00016 30.1 0.5 37 44-80 183-219 (398)
104 2nly_A BH1492 protein, diverge 48.0 8.6 0.00029 26.5 1.8 28 38-65 129-156 (245)
105 2pma_A Uncharacterized protein 46.3 7.1 0.00024 25.1 1.1 25 34-58 17-41 (146)
106 2qv5_A AGR_C_5032P, uncharacte 46.2 8.7 0.0003 26.8 1.6 28 38-65 156-183 (261)
107 3l7o_A Ribose-5-phosphate isom 45.7 6.7 0.00023 26.8 1.0 21 38-58 21-41 (225)
108 3bwu_D FIMD, outer membrane us 44.7 49 0.0017 19.8 5.1 45 20-64 27-78 (125)
109 1wx8_A Riken cDNA 4931431F19; 42.7 43 0.0015 18.8 4.1 43 22-64 14-56 (96)
110 1wyw_B Ubiquitin-like protein 42.0 33 0.0011 19.5 3.6 43 21-63 17-60 (97)
111 1wxv_A BAG-family molecular ch 40.7 37 0.0013 18.9 3.6 42 22-63 4-50 (92)
112 3lrt_A Ribose-phosphate pyroph 39.9 12 0.00041 26.3 1.5 36 41-78 3-38 (286)
113 2ki8_A Tungsten formylmethanof 39.6 28 0.00094 21.7 3.1 30 46-77 53-82 (146)
114 1o8b_A Ribose 5-phosphate isom 38.9 11 0.00036 25.6 1.1 26 37-62 22-48 (219)
115 2pjm_A Ribose-5-phosphate isom 37.6 5.8 0.0002 27.1 -0.4 21 38-58 23-43 (226)
116 3phx_B Ubiquitin-like protein 36.7 37 0.0013 18.1 3.1 40 25-64 4-44 (79)
117 2bwf_A Ubiquitin-like protein 36.2 49 0.0017 17.3 4.0 38 26-63 5-42 (77)
118 4hcn_B Polyubiquitin, ubiquiti 35.1 20 0.0007 20.4 1.8 43 22-64 19-62 (98)
119 2dzm_A FAS-associated factor 1 35.0 67 0.0023 18.8 4.2 41 24-64 8-48 (100)
120 1u9y_A RPPK;, ribose-phosphate 34.6 18 0.00062 25.1 1.8 35 42-78 4-38 (284)
121 3vdz_A Ubiquitin-40S ribosomal 34.0 17 0.00059 21.4 1.4 40 24-63 34-74 (111)
122 1xtz_A Ribose-5-phosphate isom 33.7 15 0.00052 25.6 1.2 21 38-58 41-61 (264)
123 2f8m_A Ribose 5-phosphate isom 33.5 15 0.00051 25.3 1.2 20 38-57 30-49 (244)
124 2klc_A Ubiquilin-1; ubiquitin- 33.1 48 0.0017 19.0 3.3 42 22-63 22-63 (101)
125 3ddv_A Transcriptional regulat 33.0 38 0.0013 20.1 2.9 31 50-80 18-50 (145)
126 3a9j_A Ubiquitin; protein comp 31.7 40 0.0014 17.5 2.6 31 33-63 9-39 (76)
127 3khy_A Propionate kinase; csgi 31.6 15 0.00051 27.2 0.9 35 44-80 175-209 (384)
128 2ji4_A Phosphoribosyl pyrophos 29.9 38 0.0013 24.6 2.9 37 40-78 31-70 (379)
129 3mtn_B UBA80, ubcep1, ubiquiti 29.8 54 0.0018 17.5 3.0 40 25-64 3-43 (85)
130 3s5j_B Ribose-phosphate pyroph 29.6 44 0.0015 23.9 3.1 36 41-78 6-41 (326)
131 2f9i_B Acetyl-coenzyme A carbo 29.6 58 0.002 22.7 3.7 49 21-69 107-160 (285)
132 3u30_A Ubiquitin, linear DI-ub 29.5 54 0.0019 20.4 3.3 44 21-64 16-60 (172)
133 4dbg_A Ranbp-type and C3HC4-ty 29.3 57 0.0019 19.5 3.2 54 12-65 9-67 (105)
134 4fbj_B NEDD8; effector-HOST ta 29.0 31 0.0011 19.2 1.9 33 32-64 8-40 (88)
135 3hhe_A Ribose-5-phosphate isom 28.6 9.5 0.00032 26.7 -0.5 22 37-58 43-64 (255)
136 1uj6_A Ribose 5-phosphate isom 28.4 11 0.00038 25.5 -0.2 20 38-57 25-44 (227)
137 1lk5_A D-ribose-5-phosphate is 28.4 11 0.00038 25.6 -0.2 20 38-57 23-42 (229)
138 1yx5_B Ubiquitin; proteasome, 28.3 50 0.0017 18.6 2.8 37 27-63 2-39 (98)
139 3lhe_A GNTR family transcripti 28.2 41 0.0014 20.0 2.4 31 50-80 21-53 (143)
140 1wy8_A NP95-like ring finger p 27.8 79 0.0027 17.2 4.4 42 22-63 4-48 (89)
141 1uh6_A Ubiquitin-like 5; beta- 27.8 37 0.0013 20.2 2.1 48 17-64 20-68 (100)
142 1zyi_A Methylosome subunit pic 27.5 31 0.001 22.6 1.8 14 9-22 67-80 (171)
143 1m0s_A Ribose-5-phosphate isom 27.5 9.3 0.00032 25.9 -0.7 20 38-57 23-42 (219)
144 3jr7_A Uncharacterized EGV fam 26.8 57 0.0019 22.7 3.3 32 36-73 21-52 (298)
145 1mvf_D MAZE protein, PEMI-like 26.7 71 0.0024 17.6 3.2 29 48-78 15-43 (82)
146 1ndd_A NEDD8, protein (ubiquit 26.6 44 0.0015 17.3 2.1 31 33-63 9-39 (76)
147 3hfi_A Putative regulator; str 26.4 61 0.0021 19.8 3.1 31 50-80 36-68 (170)
148 1g2o_A Purine nucleoside phosp 26.0 1.1E+02 0.0037 21.0 4.6 37 11-49 51-92 (268)
149 4avr_A PA4485; unknown functio 25.8 1.1E+02 0.0037 18.1 5.7 52 21-72 37-93 (95)
150 2ikk_A Hypothetical transcript 25.8 62 0.0021 19.8 3.1 31 50-80 42-74 (173)
151 3cnv_A Putative GNTR-family tr 25.7 64 0.0022 19.2 3.1 32 50-81 31-64 (162)
152 2g7z_A Conserved hypothetical 25.7 62 0.0021 22.3 3.3 33 36-74 6-38 (282)
153 2uyz_B Small ubiquitin-related 25.3 84 0.0029 16.6 3.4 39 25-63 3-42 (79)
154 1ttn_A DC-UBP, dendritic cell- 25.3 98 0.0034 17.7 3.7 42 23-64 21-63 (106)
155 2ooi_A SA0254 protein; staphyl 25.3 69 0.0024 19.2 3.2 31 50-80 33-65 (162)
156 1ef1_A Moesin; membrane, FERM 25.0 1.4E+02 0.0047 20.0 4.9 44 34-77 10-53 (294)
157 1v5o_A 1700011N24RIK protein; 24.3 1.1E+02 0.0036 17.5 4.3 42 23-64 5-51 (102)
158 3shq_A UBLCP1; phosphatase, hy 24.3 1.1E+02 0.0036 21.7 4.3 41 24-64 4-44 (320)
159 1yfb_A Transition state regula 24.2 85 0.0029 16.7 3.0 30 47-78 23-52 (59)
160 1dku_A Protein (phosphoribosyl 24.0 52 0.0018 23.1 2.7 36 41-78 12-47 (317)
161 2ogg_A Trehalose operon transc 23.7 70 0.0024 18.9 2.9 31 50-80 21-53 (152)
162 1j8c_A Ubiquitin-like protein 23.6 1E+02 0.0035 18.5 3.7 41 23-63 30-70 (125)
163 3n3k_B Ubiquitin; hydrolase, p 23.4 34 0.0012 18.4 1.3 39 26-64 4-43 (85)
164 1t3q_A Quinoline 2-oxidoreduct 23.2 1.3E+02 0.0043 19.1 4.2 24 24-47 8-31 (168)
165 2hj8_A Interferon-induced 17 k 23.1 1E+02 0.0035 16.9 4.4 39 25-63 4-43 (88)
166 1yqb_A Ubiquilin 3; structural 22.5 1.2E+02 0.004 17.3 3.9 45 19-63 16-60 (100)
167 2l7r_A Ubiquitin-like protein 22.1 45 0.0015 18.8 1.7 45 19-64 13-57 (93)
168 3dah_A Ribose-phosphate pyroph 21.9 61 0.0021 23.0 2.7 36 41-78 10-45 (319)
169 3nyi_A FAT acid-binding protei 21.7 44 0.0015 23.2 1.9 35 35-75 3-37 (297)
170 2p19_A Transcriptional regulat 21.7 64 0.0022 19.0 2.4 31 50-80 20-52 (149)
171 3qij_A Protein 4.1; cytoskelet 21.7 63 0.0021 22.2 2.6 54 22-75 14-68 (296)
172 2fa1_A Probable transcriptiona 21.6 65 0.0022 19.2 2.5 31 50-80 32-64 (160)
173 2io1_B Small ubiquitin-related 21.2 1.1E+02 0.0038 17.5 3.3 53 22-78 4-57 (94)
174 3kwm_A Ribose-5-phosphate isom 21.2 15 0.00051 25.0 -0.6 21 37-57 28-48 (224)
175 2kk8_A Uncharacterized protein 21.0 87 0.003 17.3 2.8 41 23-63 8-49 (84)
176 2l32_A Small archaeal modifier 20.7 67 0.0023 17.7 2.2 45 26-78 1-46 (74)
177 2fi9_A Outer membrane protein; 20.5 73 0.0025 19.4 2.5 23 36-58 69-91 (128)
178 2k4v_A Uncharacterized protein 20.5 87 0.003 19.6 2.8 42 24-65 41-86 (125)
179 2gm2_A Conserved hypothetical 20.3 74 0.0025 19.6 2.5 28 36-63 65-95 (132)
180 2fvt_A Conserved hypothetical 20.3 74 0.0025 19.7 2.5 25 34-58 66-90 (135)
181 3rfz_B Outer membrane usher pr 20.0 2.1E+02 0.0071 23.0 5.6 53 12-64 19-78 (843)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.38 E-value=4.3e-13 Score=88.21 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=39.2
Q ss_pred CcCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 21 QVLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 21 ~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
....++++.+.|||+++.+||||||+++||++++|+|+||+..
T Consensus 20 ~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~ 62 (148)
T 3s8i_A 20 GQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL 62 (148)
T ss_dssp --CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGG
T ss_pred cccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccc
Confidence 4568999999999999999999999999999999999999864
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.8e-11 Score=77.53 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=40.2
Q ss_pred CcCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 21 QVLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 21 ~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
...+++++.+.|||+++.+||||||++++|++++|+++|++...
T Consensus 22 ~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~ 65 (148)
T 2i1a_A 22 TQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMI 65 (148)
T ss_dssp -CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGC
T ss_pred cccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccC
Confidence 45789999999999999999999999999999999999997654
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=97.80 E-value=1.2e-05 Score=51.92 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=41.9
Q ss_pred cccCcCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 18 ARDQVLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 18 ~g~~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
.|..+.+--.+..+|||+++.+|+||||+.+.|+...+. . ..++..|..+||...
T Consensus 15 ~~~d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-----~-~~~p~~I~GiGG~i~ 69 (132)
T 3slz_A 15 QGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-----L-SDKSAWVQGATGGKR 69 (132)
T ss_dssp ---CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-----E-EEEEEEEECSSCEEE
T ss_pred cCCCccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-----C-CCCceEEEccCCEEE
Confidence 344556667788999999999999999999999986544 1 135788999999755
No 4
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=97.76 E-value=4.7e-05 Score=47.26 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=34.9
Q ss_pred EEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 26 MRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 26 ~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+..+|+|+.+.+|+||||-.+.|+.+...++++|-.
T Consensus 9 P~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~ 46 (104)
T 1fmb_A 9 PTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGR 46 (104)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCC
T ss_pred CEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCc
Confidence 45778999999999999999999999999999998876
No 5
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=96.73 E-value=0.0022 Score=39.45 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=23.2
Q ss_pred EEEEEECCEEEEEEEeCCCCceeeC
Q 047037 27 RIQGSIKGKSVVILIDSGSTHNSIN 51 (85)
Q Consensus 27 ~~~g~i~g~~v~~LiDSGat~~Fi~ 51 (85)
.++-+|+|+.+.+|+||||.++.|+
T Consensus 10 ~vti~I~Gq~~e~LLDTGAD~TVl~ 34 (99)
T 3ec0_A 10 VVTAYIEGQPVEVLLDTGADDSIVA 34 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEES
T ss_pred eEEEEECCEEEEEEEecCCCceEEc
Confidence 5678999999999999999999996
No 6
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=96.57 E-value=0.0029 Score=38.88 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.9
Q ss_pred EEEEEECCEEEEEEEeCCCCceeeCH
Q 047037 27 RIQGSIKGKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 27 ~~~g~i~g~~v~~LiDSGat~~Fi~~ 52 (85)
.++.+|+|+.+.+|+||||-+++|+.
T Consensus 10 ~vtvkI~Gq~~eaLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 10 LVTIKIGGQLKEALLDTGADDTIIEE 35 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSEEESC
T ss_pred EEEEEECCEEEEEEeccCCCcEEEec
Confidence 46789999999999999999999995
No 7
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=96.08 E-value=0.0065 Score=38.23 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=24.5
Q ss_pred CeEEEEEEECCEEEEEEEeCCCCceeeCHH
Q 047037 24 ETMRIQGSIKGKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~ 53 (85)
+.+. .+|+|+.+.+|+||||-++.|+..
T Consensus 14 rP~v--ikI~Gq~~eaLLDTGAD~TVi~~~ 41 (116)
T 2hah_A 14 PEIL--IFVNGYPIKFLLDTGADITVLNRR 41 (116)
T ss_dssp CEEE--EEETTEEEEEEECTTCSSCEEEGG
T ss_pred CCEE--EEECCEEEEEEecCCCCcEEEccc
Confidence 4444 999999999999999999999964
No 8
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=95.89 E-value=0.01 Score=40.73 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=24.0
Q ss_pred EEEEEEECCEEEEEEEeCCCCceeeC
Q 047037 26 MRIQGSIKGKSVVILIDSGSTHNSIN 51 (85)
Q Consensus 26 ~~~~g~i~g~~v~~LiDSGat~~Fi~ 51 (85)
-.++.+|+|+.+.+|+||||.++.|.
T Consensus 9 P~vtv~I~Gq~~e~LLDTGAD~TVl~ 34 (203)
T 3ka2_A 9 PLVTIRIGGQLKEALLDTGADDTVIE 34 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred CeEEEEECCEEEEEEEecCCCceEEe
Confidence 36778999999999999999999998
No 9
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=95.43 E-value=0.019 Score=36.13 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred EEEEEECCEEEEEEEeCCCCceeeCH
Q 047037 27 RIQGSIKGKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 27 ~~~g~i~g~~v~~LiDSGat~~Fi~~ 52 (85)
.++.+|+|+.+.+|+||||-.+.|..
T Consensus 11 ~vti~I~Gq~~eaLLDTGADdTVi~~ 36 (114)
T 3sqf_A 11 SLTLWLDDKMFTGLINTGADVTIIKL 36 (114)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEEEG
T ss_pred eEEEEECCEEEEEEEccCCCceEEec
Confidence 45689999999999999999999974
No 10
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=94.74 E-value=0.019 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.9
Q ss_pred ECCEEEEEEEeCCCCceeeCH
Q 047037 32 IKGKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 32 i~g~~v~~LiDSGat~~Fi~~ 52 (85)
|+|+.+.+|+||||.+++|..
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~ 47 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE 47 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET
T ss_pred CCCEEEEEEecCCCCcEEEec
Confidence 899999999999999999985
No 11
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=93.95 E-value=0.14 Score=30.44 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=27.7
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 11 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 11 MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSI 44 (97)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEc
Confidence 346788899999 99999999999999998753
No 12
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=93.82 E-value=0.081 Score=36.17 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.5
Q ss_pred EEEEEEECCEEEEEEEeCCCCceeeC
Q 047037 26 MRIQGSIKGKSVVILIDSGSTHNSIN 51 (85)
Q Consensus 26 ~~~~g~i~g~~v~~LiDSGat~~Fi~ 51 (85)
-.+..+|+|+.+.+|+||||.++.|.
T Consensus 113 P~~~iki~Gq~~e~LlDTGAD~TVl~ 138 (203)
T 3ka2_A 113 PLVTIRIGGQLKEALLDTGADDTVIE 138 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred CcEEEEECCEEEeeeecccCCceeee
Confidence 35678999999999999999999995
No 13
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=91.48 E-value=0.16 Score=31.95 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.7
Q ss_pred EEEEEEC-----CEEEEEEEeCCCCceeeCH
Q 047037 27 RIQGSIK-----GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 27 ~~~g~i~-----g~~v~~LiDSGat~~Fi~~ 52 (85)
.+..+|+ |+.+.+|+||||..+.|..
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~ 42 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPI 42 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEG
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEec
Confidence 4567888 9999999999999999974
No 14
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=89.83 E-value=0.5 Score=32.99 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=28.2
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+.+++.+++||||+..++...
T Consensus 13 ~~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 44 (323)
T 1bxo_A 13 NDEEYITPVTIGGTTLNLNFDTGSADLWVFST 44 (323)
T ss_dssp GGSCEEEEEEETTEEEEEEEETTCCCEEECBT
T ss_pred CCCEEEEEEEECCEEEEEEEeCCCcceEEecC
Confidence 45678889999999999999999999999754
No 15
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=89.79 E-value=0.53 Score=32.95 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=28.3
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+.+++.+++||||+..++...
T Consensus 13 ~~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~ 44 (323)
T 1izd_A 13 NDEEYITQVTVGDDTLGLDFDTGSADLWVFSS 44 (323)
T ss_dssp GGCCEEEEEEETTEEEEEEEETTCCCEEECBT
T ss_pred CCCEEEEEEEECCEEEEEEEcCCCcceEEecC
Confidence 45678899999999999999999999999764
No 16
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=89.38 E-value=0.73 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=28.9
Q ss_pred CcCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 21 QVLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 21 ~~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
.....|.+.-.|+ .+++.+++||||+..++...
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~ 46 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIAST 46 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccC
Confidence 4467889999999 99999999999999999754
No 17
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=89.24 E-value=0.74 Score=30.91 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=26.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 12 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 43 (239)
T 1b5f_A 12 DTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPS 43 (239)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEEc
Confidence 46788999999 8999999999999999964
No 18
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=89.19 E-value=0.66 Score=32.41 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=28.0
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+.+++.+++||||+..++...
T Consensus 12 ~~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 43 (325)
T 1ibq_A 12 NDEEYLTPVTVGKSTLHLDFDTGSADLWVFSD 43 (325)
T ss_dssp TTSCEEEEEEEBTEEEEEEEETTCCCEEEECT
T ss_pred CCCEEEEEEEECCEEEEEEEeCCCccceEeeC
Confidence 45678888899999999999999999999754
No 19
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=89.09 E-value=1.1 Score=31.31 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=28.1
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 3c9x_A 13 ADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSS 46 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecC
Confidence 456788899999 99999999999999999754
No 20
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=88.61 E-value=1.2 Score=31.03 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=28.2
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 46 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSS 46 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecC
Confidence 456788899999 99999999999999999764
No 21
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=87.38 E-value=1 Score=31.72 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=28.3
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 16 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 49 (361)
T 1mpp_A 16 DLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHK 49 (361)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBT
T ss_pred CCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCC
Confidence 357889999999 99999999999999999754
No 22
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=87.33 E-value=0.61 Score=32.70 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=26.3
Q ss_pred CeEEEEEEECCEEEEEEEeCCCCceeeCHH
Q 047037 24 ETMRIQGSIKGKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~ 53 (85)
..|.+.-.|+.+++.+++||||+..++...
T Consensus 17 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~ 46 (330)
T 1yg9_A 17 TQYAGITKIGNQNFLTVFDSTSCNVVVASQ 46 (330)
T ss_dssp TTSEEEEEETTEEEEEEEETTCCCEEEECT
T ss_pred CEEEEEEEECCEEEEEEEeCCCcceEEecC
Confidence 567788888899999999999999999754
No 23
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=87.26 E-value=0.9 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=26.5
Q ss_pred CeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 24 ETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 24 ~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
..|.+.-.|+ .+++.+++||||+..++..
T Consensus 12 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 12 VDYVVNVGVGSPATTYSLLVDTGSSNTWLGA 42 (340)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCCEECS
T ss_pred cEEEEEEEECCCCcEEEEEEeCCChhheecC
Confidence 5788999999 9999999999999999974
No 24
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=87.22 E-value=1.1 Score=31.30 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=26.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 12 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 43 (329)
T 1dpj_A 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPS 43 (329)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCcCeEEec
Confidence 36788999999 8999999999999999964
No 25
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=86.91 E-value=1.1 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (342)
T 2qzx_A 11 AITYTADITVGSDNQKLNVIVDTGSSDLWIPD 42 (342)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred CeEEEEEEEECCCCcEEEEEEeCCCCCeEEec
Confidence 46788999999 9999999999999999963
No 26
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=86.79 E-value=1.2 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=27.1
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (395)
T 2qp8_A 20 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAA 52 (395)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECS
T ss_pred CceEEEEEEecCCCceEEEEEecCCCceEEECC
Confidence 35688899999 99999999999999999643
No 27
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=86.59 E-value=1.2 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++.-.
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 19 STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE 52 (403)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS
T ss_pred CCceEEEEEECCCCCceeEEEEECCCCceeECCC
Confidence 457899999999 89999999999999999743
No 28
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=86.41 E-value=1.1 Score=31.29 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 11 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 42 (339)
T 3fv3_A 11 GPSYASKVSVGSNKQQQTVIIDTGSSDFWVVD 42 (339)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCCCceEEec
Confidence 35789999999 8999999999999999974
No 29
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=86.39 E-value=1.1 Score=31.39 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=26.9
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (334)
T 1j71_A 11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVD 42 (334)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEec
Confidence 46788999999 9999999999999999963
No 30
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=85.99 E-value=1.4 Score=31.23 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=26.0
Q ss_pred CeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 24 ETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 24 ~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
..|.+.-.|+ .+++.+++||||+..++..
T Consensus 13 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 43 (383)
T 2ewy_A 13 RGYYLEMLIGTPPQKLQILVDTGSSNFAVAG 43 (383)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred CcEEEEEEecCCCceEEEEEecCCCceEEec
Confidence 5688899999 8999999999999999964
No 31
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=85.88 E-value=1.6 Score=30.31 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=27.6
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 43 (324)
T 1am5_A 10 ADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSS 43 (324)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEECBT
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecC
Confidence 346788899998 69999999999999999754
No 32
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=85.85 E-value=1.5 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=26.9
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 13 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 44 (323)
T 3cms_A 13 DSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPS 44 (323)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCccceEEcC
Confidence 46788999999 7999999999999999974
No 33
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=85.50 E-value=1.5 Score=31.32 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 58 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGA 58 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence 35799999999 8999999999999999964
No 34
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=85.38 E-value=1.3 Score=30.85 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (342)
T 3pvk_A 11 QVTYAADITVGSNNQKLNVIVDTGSSDLWVPD 42 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred CcEEEEEEEEcCCCcEEEEEEECCCcceEEEc
Confidence 46788999999 8999999999999999953
No 35
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=84.84 E-value=1.6 Score=30.35 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.3
Q ss_pred cCCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 22 VLETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 22 ~~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
....|.+.-.|+ .+++.+++||||+..++...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~ 43 (329)
T 1htr_B 10 MDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSV 43 (329)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred cCCEEEEEEEECCCCcEEEEEEcCCCccEEEecC
Confidence 346788888998 79999999999999999753
No 36
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=84.22 E-value=1.9 Score=29.94 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 17 d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 49 (341)
T 3k1w_A 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS 49 (341)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCCcceEEccC
Confidence 46788999999 69999999999999999743
No 37
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=84.04 E-value=1.3 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=26.1
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 10 d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 41 (320)
T 4aa9_A 10 DSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPS 41 (320)
T ss_dssp CCCCEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEcC
Confidence 35688888898 7999999999999999975
No 38
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=83.88 E-value=1.1 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=23.5
Q ss_pred EEECCEE-------EEEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKS-------VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~-------v~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++. ..++||||.+..+++..+++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 3566665 3689999999999999988765
No 39
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=83.45 E-value=2 Score=31.93 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 137 ~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~ 169 (453)
T 2bju_A 137 NIMFYGDAEVGDNQQPFTFILDTGSANLWVPSV 169 (453)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEECCCCeEEEEEEECCCcceEEecc
Confidence 46789999999 99999999999999999754
No 40
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=82.50 E-value=2.1 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=27.3
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 60 ~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~ 92 (383)
T 2x0b_A 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSS 92 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCCCeEEecc
Confidence 46788899998 79999999999999999754
No 41
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=82.32 E-value=2.1 Score=31.31 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=26.1
Q ss_pred CeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 24 ETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 24 ~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
..|.+.-.|+ .+++.+++||||+..++..
T Consensus 74 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~ 104 (455)
T 3lpj_A 74 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGA 104 (455)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 4688899999 8999999999999999964
No 42
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=81.25 E-value=2.1 Score=31.72 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=27.3
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 136 d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~ 168 (451)
T 3qvc_A 136 NVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSI 168 (451)
T ss_dssp CEEEEEEEEETTTTEEEEEEEESSBCSEEEEBT
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCccEEEecC
Confidence 34688899999 89999999999999999764
No 43
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=81.24 E-value=2 Score=29.88 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.0
Q ss_pred EEECCEEE------EEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKSV------VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~v------~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++.+ .++||||.+..++++.+++++
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 232 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNI 232 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHH
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHH
Confidence 35666654 689999999999999887654
No 44
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=80.82 E-value=1.7 Score=30.63 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=26.9
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 22 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~ 54 (351)
T 1tzs_A 22 DMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSV 54 (351)
T ss_dssp SSCCCEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEecC
Confidence 46788888998 79999999999999999653
No 45
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=80.08 E-value=2.5 Score=31.52 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINA 52 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~ 52 (85)
...|.+.-.|+ .+++.+++||||+..++..
T Consensus 51 ~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~ 82 (478)
T 1qdm_A 51 NAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPS 82 (478)
T ss_dssp GCCEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 46788999999 8999999999999999964
No 46
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=80.01 E-value=1.7 Score=31.24 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.4
Q ss_pred EEEeCCCCceeeCHHHHHhc
Q 047037 39 ILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 39 ~LiDSGat~~Fi~~~~a~~l 58 (85)
++||||.|..++++.+.+.+
T Consensus 262 aiiDSGTt~~~lp~~~~~~l 281 (403)
T 3aup_A 262 TMISTSTPHMVLQQSVYQAF 281 (403)
T ss_dssp EEECSSCSSEEECHHHHHHH
T ss_pred EEEECCCccEEeCHHHHHHH
Confidence 89999999999999877644
No 47
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=79.40 E-value=2.2 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.1
Q ss_pred EEECC-EEE----EEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKG-KSV----VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g-~~v----~~LiDSGat~~Fi~~~~a~~l 58 (85)
..+++ +.+ .++||||.|..+++..+++++
T Consensus 195 i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l 228 (340)
T 1wkr_A 195 IRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY 228 (340)
T ss_dssp EEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred EEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence 35666 554 799999999999999888765
No 48
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=79.32 E-value=1.1 Score=31.38 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.2
Q ss_pred CEEEEEEEeCCCCceeeCHHHHHhc
Q 047037 34 GKSVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 34 g~~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
.....++||||.|..++++.+++++
T Consensus 206 ~~~~~aiiDSGTs~~~lp~~~~~~i 230 (323)
T 1izd_A 206 SDSITGIADTGTTLLLLDDSIVDAY 230 (323)
T ss_dssp CCCEEEEECTTCCSEEECHHHHHHH
T ss_pred CCCceEEEeCCCcceeCCHHHHHHH
Confidence 3456799999999999999988766
No 49
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=78.81 E-value=1.1 Score=31.22 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEEEeCCCCceeeCHHHHHhc
Q 047037 35 KSVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 35 ~~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
....++||||.|..++++.+++++
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l 229 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQY 229 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHH
T ss_pred CCceEEEeCCCCceeCCHHHHHHH
Confidence 456899999999999999998765
No 50
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=78.58 E-value=2.8 Score=29.91 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=27.0
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 55 d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~ 87 (370)
T 3psg_A 55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSV 87 (370)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEEcCCCCEEEEEEeCCCCccEEECC
Confidence 45688999999 59999999999999999753
No 51
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=78.38 E-value=2.8 Score=29.13 Aligned_cols=28 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred EECCEE-----EEEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKS-----VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~-----v~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++++. ..++||||.+..+++..+++++
T Consensus 202 ~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i 234 (342)
T 3pvk_A 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQI 234 (342)
T ss_dssp EETTEEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EECCEEecCCCceEEEeCCCCCeecCHHHHHHH
Confidence 355554 5799999999999999887654
No 52
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=78.25 E-value=5.6 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=30.8
Q ss_pred eccccCcCCeEEEEEEECC--EEEEEEEeCCCCceeeCH
Q 047037 16 DVARDQVLETMRIQGSIKG--KSVVILIDSGSTHNSINA 52 (85)
Q Consensus 16 A~~g~~~~~~~~~~g~i~g--~~v~~LiDSGat~~Fi~~ 52 (85)
.+.+......|.+.-.|+- +++.+++||||+..++.-
T Consensus 12 pv~~d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c 50 (413)
T 3vla_A 12 PVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDC 50 (413)
T ss_dssp EEEECTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEEC
T ss_pred EeeecCCCCeEEEEEEcCCCCcceEEEEeCCChhhhccc
Confidence 4445556788999999997 999999999999999963
No 53
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=78.12 E-value=2.8 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.614 Sum_probs=21.9
Q ss_pred EECCEEE----EEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKSV----VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~v----~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++|+.+ .++||||.|..++++.+++++
T Consensus 203 ~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (342)
T 2qzx_A 203 NVRGRNVDANTNVLLDSGTTISYFTRSIVRNI 234 (342)
T ss_dssp EETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EECCEecCCCcCEEEeCCCCCEEcCHHHHHHH
Confidence 4556543 589999999999999887654
No 54
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=77.89 E-value=2.9 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.4
Q ss_pred EECCEEE-----EEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKSV-----VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~v-----~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++++.+ .++||||.+..++++.+++.+
T Consensus 202 ~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (329)
T 1dpj_A 202 GLGDEYAELESHGAAIDTGTSLITLPSGLAEMI 234 (329)
T ss_dssp EETTEEEECSSCEEEECTTCSCEEECHHHHHHH
T ss_pred EECCeEecCCCccEEeeCCCCcEECCHHHHHHH
Confidence 4566554 589999999999999988765
No 55
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=77.34 E-value=2.6 Score=29.00 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=18.9
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..+++..+++++
T Consensus 208 ~~~iiDsGtt~~~lP~~~~~~i 229 (320)
T 4aa9_A 208 CQAILDTGTSVLFGPSSDILKI 229 (320)
T ss_dssp EEEEECTTCSSEEEEHHHHHHH
T ss_pred cEEEEECCCCcEECCHHHHHHH
Confidence 4689999999999998887654
No 56
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=77.29 E-value=2.2 Score=29.63 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..+++..+++++
T Consensus 215 ~~~iiDSGtt~~~lP~~~~~~i 236 (339)
T 3fv3_A 215 DGALLDSGTTLTYFPSDFAAQL 236 (339)
T ss_dssp EEEEECTTBSSEEECHHHHHHH
T ss_pred ccEEEeCCCCCEecCHHHHHHH
Confidence 3589999999999999887654
No 57
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=76.86 E-value=1.9 Score=30.77 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=21.8
Q ss_pred EEECCEEEE----------EEEeCCCCceeeCHHHHH
Q 047037 30 GSIKGKSVV----------ILIDSGSTHNSINAEVAQ 56 (85)
Q Consensus 30 g~i~g~~v~----------~LiDSGat~~Fi~~~~a~ 56 (85)
-.++++.+. ++||||.|..++++.+.+
T Consensus 213 i~vg~~~~~~~~~~~~~~~~iiDTGTtl~~lp~~~~~ 249 (381)
T 1t6e_X 213 IVVGDTRVPVPEGALATGGVMLSTRLPYVLLRPDVYR 249 (381)
T ss_dssp EEETTEECCCCTTCSCTTCEEECSSCSSEEECHHHHH
T ss_pred EEEcCEEecCCHHHccCCCEEEECCCccEEeCHHHHH
Confidence 357777663 899999999999988765
No 58
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=76.85 E-value=7 Score=23.09 Aligned_cols=51 Identities=8% Similarity=0.167 Sum_probs=43.3
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCC
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAF 74 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~an 74 (85)
..+.++++...+|.-+.+-++...+.--+-.++.+++++.. ..++.++--|
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~--~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDN--EQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCS--SCCEEEEECC
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCC--CCeEEEEEEC
Confidence 45789999999999999999998888889999999998663 3678887666
No 59
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=76.83 E-value=2.7 Score=29.31 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=23.3
Q ss_pred EEECCEE-----EEEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKS-----VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~-----v~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++. ..++||||.|..++++.+++++
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 235 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPI 235 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHH
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHH
Confidence 4566665 3689999999999999888765
No 60
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=76.66 E-value=2.8 Score=29.44 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred EEECCEEE------EEE-EeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKSV------VIL-IDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~v------~~L-iDSGat~~Fi~~~~a~~l 58 (85)
-.++++.+ .++ ||||.+..++++.+.+++
T Consensus 218 i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l 253 (361)
T 1mpp_A 218 VKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKV 253 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHH
T ss_pred EEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHH
Confidence 34666554 578 999999999999887654
No 61
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=76.46 E-value=1.7 Score=30.84 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=22.4
Q ss_pred EEECCEEE----------EEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKSV----------VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~v----------~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++.+ .++||||.|..++++.+.+.+
T Consensus 204 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 242 (383)
T 2ewy_A 204 LEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAV 242 (383)
T ss_dssp EEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHH
T ss_pred EEECCEEccccccccCCccEEEEcCCccccCCHHHHHHH
Confidence 35666654 589999999999999876644
No 62
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=76.35 E-value=3.4 Score=29.06 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=23.1
Q ss_pred EEECCEE------EEEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKS------VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~------v~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++. ..++||||.+..+++..+++.+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 244 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQL 244 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHH
Confidence 3566665 3699999999999999888654
No 63
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=76.34 E-value=1.9 Score=28.57 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.|..++++..++++
T Consensus 121 ~~aiiDSGTt~~~lP~~~~~~l 142 (241)
T 1lya_B 121 CEAIVDTGTSLMVGPVDEVREL 142 (241)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred CEEEEECCCccccCCHHHHHHH
Confidence 4789999999999999888765
No 64
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=76.28 E-value=3.4 Score=28.76 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=21.7
Q ss_pred EECCEE----EEEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKS----VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~----v~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++|+. ..++||||.|..++++.+++++
T Consensus 203 ~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l 234 (334)
T 1j71_A 203 NFDGTSVSTNADVVLDSGTTITYFSQSTADKF 234 (334)
T ss_dssp EETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EECCEeccCCccEEEeCCCCcEecCHHHHHHH
Confidence 455554 3589999999999999887654
No 65
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=76.19 E-value=4.1 Score=24.88 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=34.1
Q ss_pred EEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCE
Q 047037 28 IQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEK 77 (85)
Q Consensus 28 ~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~ 77 (85)
+...|.|..+..--||||+.+.|++.+-+.= ++.....+++-.|+.
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E----~PI~~~~I~TIHG~k 55 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDE----RPIQTMLIKTIHGEK 55 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTTC----CCSEEEEEECSSCEE
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhccc----ccccceEEEEecCce
Confidence 7789999999999999999999998875432 223445566655544
No 66
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=75.32 E-value=3.8 Score=28.41 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..+++..+++++
T Consensus 221 ~~~iiDsGtt~~~lP~~~~~~i 242 (341)
T 3k1w_A 221 CLALVDTGASYISGSTSSIEKL 242 (341)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred CEEEEECCCChhcCCHHHHHHH
Confidence 5799999999999999887765
No 67
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=74.92 E-value=1.4 Score=31.54 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.7
Q ss_pred CCeEEEEEEEC--CEEEEEEEeCCCCceeeCHH
Q 047037 23 LETMRIQGSIK--GKSVVILIDSGSTHNSINAE 53 (85)
Q Consensus 23 ~~~~~~~g~i~--g~~v~~LiDSGat~~Fi~~~ 53 (85)
...|.+.-.|+ .+++.+++||||+..++...
T Consensus 61 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 93 (375)
T 1miq_A 61 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK 93 (375)
T ss_dssp CEEEECCCEETTTTEECCEEEETTCCCEEEEBT
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEccC
Confidence 35688888898 89999999999999999754
No 68
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=73.82 E-value=3 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.381 Sum_probs=22.1
Q ss_pred EECCEE-----EEEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKS-----VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~-----v~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++++. ..++||||.+..++++.+++.+
T Consensus 198 ~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l 230 (324)
T 1am5_A 198 TVNGQTAACEGCQAIVDTGTSKIVAPVSALANI 230 (324)
T ss_dssp EETTEECCCCCEEEEECTTCSSEEECTTTHHHH
T ss_pred EECCceeeccCceEEEecCCccEECCHHHHHHH
Confidence 455554 5799999999999998877654
No 69
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=73.58 E-value=2.2 Score=30.49 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.4
Q ss_pred EEECCEEE----------EEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGKSV----------VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~~v----------~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++++.+ .++||||.|..+++..+++.+
T Consensus 215 i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 253 (395)
T 2qp8_A 215 VEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA 253 (395)
T ss_dssp EEETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHH
T ss_pred EEECCEEcccCccccCCceEEEEcCCCcEecCHHHHHHH
Confidence 35677664 489999999999998876543
No 70
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=73.46 E-value=1.9 Score=29.94 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=19.1
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..++++.+.+++
T Consensus 212 ~~aiiDSGTt~~~lp~~~~~~l 233 (329)
T 1htr_B 212 CQAIVDTGTSLLTVPQQYMSAL 233 (329)
T ss_dssp EEEEECTTCCSEEEEGGGHHHH
T ss_pred ceEEEecCCccEECCHHHHHHH
Confidence 4699999999999999888755
No 71
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=72.74 E-value=1.5 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCceeeCHH----HHHhcCC
Q 047037 36 SVVILIDSGSTHNSINAE----VAQRVNL 60 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~----~a~~l~l 60 (85)
...++||||.+..++++. +++.+.-
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~ 240 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGA 240 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTC
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhc
Confidence 457899999999999999 7777653
No 72
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=72.59 E-value=2.4 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=22.2
Q ss_pred EECCEEE----------EEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKSV----------VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~v----------~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++++.+ .++||||.|..+++..+++.+
T Consensus 223 ~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i 260 (402)
T 3vf3_A 223 EINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA 260 (402)
T ss_dssp EETTEECCCCGGGGGSSCEEECTTCCSEEEEHHHHHHH
T ss_pred EECCEEecccccccCCCeEEEECCCCcccCCHHHHHHH
Confidence 5677765 489999999999998776553
No 73
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=71.04 E-value=3.9 Score=28.42 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCceeeCHHHHHhc
Q 047037 36 SVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
...++||||.|..++++.+++++
T Consensus 212 ~~~aiiDSGTt~~~lP~~~~~~l 234 (329)
T 1oew_A 212 SIDGIADTGTTLLYLPATVVSAY 234 (329)
T ss_dssp EEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEeCCCCCEECCHHHHHHH
Confidence 46799999999999999998765
No 74
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=70.56 E-value=2.7 Score=29.23 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCceeeCHHHHHhc
Q 047037 36 SVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
...++||||.|..++++.+++++
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i 230 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAY 230 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHH
T ss_pred CceEEEeCCCCcEeCCHHHHHHH
Confidence 46799999999999999988765
No 75
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=70.55 E-value=2.7 Score=30.70 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=22.4
Q ss_pred EECCEEE----------EEEEeCCCCceeeCHHHHHhc
Q 047037 31 SIKGKSV----------VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 31 ~i~g~~v----------~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++++.+ .++||||.|..+++..+++.+
T Consensus 269 ~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i 306 (455)
T 3lpj_A 269 EINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAA 306 (455)
T ss_dssp EETTEECCCCGGGGGSSCEEECTTSSSEEEEHHHHHHH
T ss_pred EECCEEccccccccCCCeEEEECCCcceeCCHHHHHHH
Confidence 5677765 489999999999998876553
No 76
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=69.18 E-value=10 Score=27.02 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=23.3
Q ss_pred EEECCE---EEEEEEeCCCCceeeCHHHHHhc
Q 047037 30 GSIKGK---SVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 30 g~i~g~---~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
-.++|+ ...++||||.+..+++..+++.+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l 278 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKF 278 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHH
Confidence 556674 46799999999999999887654
No 77
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=68.78 E-value=3.1 Score=28.97 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.6
Q ss_pred EEEEEEEeCCCCceeeCHHHHHhc
Q 047037 35 KSVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 35 ~~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
....++||||.|..++++.+++++
T Consensus 212 ~~~~aiiDSGTt~~~lp~~~~~~i 235 (329)
T 3c9x_A 212 NSIDGIADTGTTLLLLDDNVVDAY 235 (329)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHH
T ss_pred CCceEEEECCCCcEeCCHHHHHHH
Confidence 346799999999999999988765
No 78
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=66.20 E-value=4.9 Score=29.22 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=15.5
Q ss_pred EEEeCCCCceeeCHHHHH
Q 047037 39 ILIDSGSTHNSINAEVAQ 56 (85)
Q Consensus 39 ~LiDSGat~~Fi~~~~a~ 56 (85)
++||||.|..+++..+.+
T Consensus 268 aIiDSGTslt~lp~~~y~ 285 (413)
T 3vla_A 268 TKISTINPYTVLETSIYK 285 (413)
T ss_dssp EEECSSSSSEEEEHHHHH
T ss_pred EEEECCCCcEEcCHHHHH
Confidence 799999999999977643
No 79
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.76 E-value=15 Score=20.21 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=35.7
Q ss_pred CcCCeEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 21 QVLETMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 21 ~~~~~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+..|++..+. +|+.+.+=|+.-.|..-+-.+++++.++|..
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 46 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKK 46 (87)
T ss_dssp CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTT
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChH
Confidence 346778888776 6888888999999999999999999998765
No 80
>4b0m_A F1 capsule-anchoring protein; protein transport, chaperone-usher pathway, PILI assembly; 1.80A {Yersinia pestis} PDB: 4b0e_A
Probab=62.72 E-value=18 Score=22.43 Aligned_cols=48 Identities=8% Similarity=0.095 Sum_probs=35.0
Q ss_pred ccCcCCeEEEEEEECCEEE-----EEEE--eCCCCc--eeeCHHHHHhcCCcccCCC
Q 047037 19 RDQVLETMRIQGSIKGKSV-----VILI--DSGSTH--NSINAEVAQRVNLSPNANN 66 (85)
Q Consensus 19 g~~~~~~~~~~g~i~g~~v-----~~Li--DSGat~--~Fi~~~~a~~l~l~~~~~~ 66 (85)
|...||+|++.-.+||+.+ .|.. +.|... --+++++.+++|+.+...+
T Consensus 25 g~~~PG~Y~vdI~vN~~~~~~~~i~F~~~~~~~~~~l~pClt~~~L~~~Gv~~~~~~ 81 (136)
T 4b0m_A 25 GLQLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYP 81 (136)
T ss_dssp TCCCCEEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEECCCHHHHHHTTBCGGGCG
T ss_pred CCCCCcEEEEEEEECCccccceEEEEEEecCCCCceEEEecCHHHHHHcCCChHHcc
Confidence 5566999999999999865 3332 334322 2689999999999887643
No 81
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=62.37 E-value=6.3 Score=29.15 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.7
Q ss_pred EEEEEEEeCCCCceeeCHHHHHhcC
Q 047037 35 KSVVILIDSGSTHNSINAEVAQRVN 59 (85)
Q Consensus 35 ~~v~~LiDSGat~~Fi~~~~a~~l~ 59 (85)
....++||||.|..++++.+++.+-
T Consensus 330 ~~~~aiiDSGTt~i~lP~~~~~~i~ 354 (451)
T 3qvc_A 330 KKANVILDSATSVITVPTEFFNQFV 354 (451)
T ss_dssp EEEEEEECTTBSSEEECHHHHHHHH
T ss_pred CCceEEEeCCCccccCCHHHHHHHH
Confidence 4678999999999999999987763
No 82
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=60.10 E-value=9.5 Score=21.50 Aligned_cols=46 Identities=13% Similarity=0.306 Sum_probs=38.9
Q ss_pred ccCcCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 19 RDQVLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 19 g~~~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
+...+..|++..+ .+|+.+.+-|+...|..-+-..++++.|++...
T Consensus 11 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQ 57 (91)
T ss_dssp CCCCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhh
Confidence 4455678888887 688999999999999999999999999988774
No 83
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.81 E-value=23 Score=20.42 Aligned_cols=43 Identities=5% Similarity=0.020 Sum_probs=37.2
Q ss_pred cCCeEEEEEEECCEEE-EEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGSIKGKSV-VILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v-~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
....|++..+.+|+.. .+=|+..+|..-+-.+++++.|++.+.
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~ 47 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPAR 47 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTT
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 4567888888899998 588999999999999999999998775
No 84
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=59.27 E-value=11 Score=26.75 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=23.0
Q ss_pred cCcCCeEEEEEEECCEEEEEEEeCCCCceeeC
Q 047037 20 DQVLETMRIQGSIKGKSVVILIDSGSTHNSIN 51 (85)
Q Consensus 20 ~~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~ 51 (85)
......|.+.-.|+. + +++||||+..++.
T Consensus 10 ~~~~~~Y~~~i~iGt-P--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 10 DPATSLYTIPFHDGA-S--LVLDVAGPLVWST 38 (381)
T ss_dssp CTTTCCEEEEEETTE-E--EEEETTCCCEEEC
T ss_pred cCCCcEEEEEEeCCC-E--EEEECCCCceEEe
Confidence 344567888888864 5 8999999999997
No 85
>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A
Probab=58.78 E-value=3.1 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=32.7
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|-+++..+-+...++||-++..
T Consensus 198 GlS~~yVa~r~a~~lgk~~~~~~lIv~HLGnGaSi~A 234 (415)
T 3sk3_A 198 GTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVSA 234 (415)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCEEEEECSSSCEEEE
T ss_pred cchHHHHHHHHHHHhCCChHHCcEEEEEeCCCceEEE
Confidence 4478899999999999999999999999999988864
No 86
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=58.72 E-value=2.5 Score=31.51 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||-++..
T Consensus 180 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~A 216 (403)
T 2iir_A 180 GTSHRYVSKRAAEILGKKLEELKIITCHIGNGASVAA 216 (403)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEEE
T ss_pred hhhHHHHHHHHHHHhCCChHHCCEEEEEeCCCeeeee
Confidence 4478899999999999999888999999999987764
No 87
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=58.49 E-value=5.2 Score=28.49 Aligned_cols=22 Identities=9% Similarity=0.212 Sum_probs=19.1
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..+++..+++.+
T Consensus 254 ~~aiiDTGTs~~~lP~~~~~~i 275 (370)
T 3psg_A 254 CQAIVDTGTSLLTGPTSAIANI 275 (370)
T ss_dssp EEEEECTTCCSEEEEHHHHHHH
T ss_pred ceEEEcCCCCcEECCHHHHHHH
Confidence 4689999999999999887665
No 88
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=57.72 E-value=9.4 Score=28.30 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCceeeCHHHHHhcC
Q 047037 36 SVVILIDSGSTHNSINAEVAQRVN 59 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l~ 59 (85)
...++||||.|..++++.+++.+.
T Consensus 332 ~~~aIiDSGTsl~~lP~~~~~~l~ 355 (453)
T 2bju_A 332 KANCIVDSGTSAITVPTDFLNKML 355 (453)
T ss_dssp EEEEEECTTCCSEEECHHHHHHHT
T ss_pred cccEEEcCCCCeEecCHHHHHHHH
Confidence 457899999999999999998774
No 89
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.10 E-value=14 Score=19.88 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=34.1
Q ss_pred cCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.+..|++..+ .+|+.+.+-|+.-+|..-+-..++++.|++...
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~ 47 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQ 47 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTT
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 3466777666 357778888999999999999999999987663
No 90
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=56.54 E-value=19 Score=20.29 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=27.1
Q ss_pred eeCHHHHHhcCCcccCCCcEEEEeCCCCEEEEeeEe
Q 047037 49 SINAEVAQRVNLSPNANNRLEIMVAFGEKLMSSGKC 84 (85)
Q Consensus 49 Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~~g~c 84 (85)
-|+.++|+.||+...-..-+.|..-||+.+-|-.+.
T Consensus 28 nIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 28 LIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp EECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred eCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 579999999998887555555555589888776553
No 91
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=56.43 E-value=2.6 Score=31.42 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=32.2
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||-++..
T Consensus 181 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~A 217 (408)
T 1g99_A 181 GTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITA 217 (408)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGCEEEEEEESSSEEEEE
T ss_pred hhhHHHHHHHHHHHhCCChhhCCEEEEEeCCccchhh
Confidence 4478899999999999999888999999999987764
No 92
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=56.33 E-value=7 Score=28.11 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.+..+++..+++.+
T Consensus 264 ~~aiiDTGTs~~~lP~~~~~~i 285 (383)
T 2x0b_A 264 CLALVDTGASYISGSTSSIEKL 285 (383)
T ss_dssp EEEEECTTCSSEEECHHHHHHH
T ss_pred cEEEEcCCCceEEcCHHHHHHH
Confidence 5799999999999998887655
No 93
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=56.10 E-value=26 Score=20.01 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=36.7
Q ss_pred CCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 23 LETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 23 ~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
...|++..+.+++...+=|+..+|..-+-.+++++.|+|...
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~ 56 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAM 56 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTT
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 456888888899999999999999999999999999988765
No 94
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=55.71 E-value=3.2 Score=31.02 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=32.3
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||-++..
T Consensus 189 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSi~A 225 (415)
T 2e1z_A 189 GTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICA 225 (415)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCEEEEEEESSSEEEEE
T ss_pred hhhHHHHHHHHHHHhCCChhhcCEEEEEeCCchhhhh
Confidence 4578899999999999999888999999999987764
No 95
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=55.33 E-value=24 Score=19.56 Aligned_cols=42 Identities=5% Similarity=0.205 Sum_probs=35.2
Q ss_pred CCeEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 23 LETMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 23 ~~~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
+.+|++..+. +|+.+.+-|+.-.|..-+-.+++++.|++...
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 45 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK 45 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGG
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 4677777776 68888889999999999999999999988763
No 96
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=54.29 E-value=8.6 Score=21.86 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCeEEEEEEECCEEEEE-EEeCCCCceeeCHHHHHhcCCcccC
Q 047037 23 LETMRIQGSIKGKSVVI-LIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 23 ~~~~~~~g~i~g~~v~~-LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
...|++..+.+|+...+ =|+..+|..-+-.+++++.|+|.+.
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~ 47 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPER 47 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTT
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHH
Confidence 45577777778888877 7899999999999999999988764
No 97
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=53.57 E-value=26 Score=19.51 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=37.9
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
..+++.+.-..+|+.+.+=|+..+|..-+-.+++++.|+|...
T Consensus 9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 51 (85)
T 2kd0_A 9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRG 51 (85)
T ss_dssp SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTT
T ss_pred cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 4578889999999999999999999999999999999988653
No 98
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=53.53 E-value=23 Score=19.52 Aligned_cols=44 Identities=5% Similarity=0.194 Sum_probs=36.6
Q ss_pred CcCCeEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 21 QVLETMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 21 ~~~~~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
..+..|++..+. +|+...+-|+.-.|..-+-.+++++.|+|...
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 57 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEK 57 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGG
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 346788888887 68888899999999999999999999988763
No 99
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=53.37 E-value=8.1 Score=28.70 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=19.1
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..++||||.|..+++..+++.+
T Consensus 254 ~~aiiDTGTs~~~lP~~~~~~i 275 (478)
T 1qdm_A 254 CAAIADSGTSLLAGPTAIITEI 275 (478)
T ss_dssp EEEEECSSCCSEEECHHHHHHH
T ss_pred ceEEEcCCCCceeCCHHHHHHH
Confidence 4689999999999999887754
No 100
>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}
Probab=52.83 E-value=4.4 Score=30.58 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||.++..
T Consensus 193 GlS~~yva~~~a~~lgk~~~~~~lIv~HLGnGaSv~A 229 (438)
T 4h0p_A 193 GLSYASIVQSLAEHLKKPSDQINVVVAHLGSGSSSCC 229 (438)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCEEEEECSSSCEEEE
T ss_pred HHhHHHHHHHHHHHhCCChhhccEEEEEeCCCcEEEE
Confidence 4578999999999999999988999999999988764
No 101
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=51.73 E-value=3.8 Score=30.44 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||-.+..
T Consensus 174 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv~A 210 (391)
T 3r9p_A 174 GTSHRYVSEQAAAFLDRPLRGLKQIVLHLGNGCSASA 210 (391)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEEE
T ss_pred HHhHHHHHHHHHHHhCCChHHcCEEEEEeCCCcEeEE
Confidence 3478899999999999999988999999999977654
No 102
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=50.36 E-value=19 Score=19.69 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=35.9
Q ss_pred cCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
....|.+... .+|+.+.+-|+.-.|..-+-..++++.|+|...
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 52 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 52 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHH
Confidence 3466777777 478888899999999999999999999988764
No 103
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=48.42 E-value=4.6 Score=30.05 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|.+.+..+-+...++||-.+..
T Consensus 183 GlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv~A 219 (398)
T 4ijn_A 183 GTSHEYVSQQAAIFLDRPLESLNQIVLHLGNGASASA 219 (398)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEEEE
T ss_pred HHhHHHHHHHHHHHhCCChHHccEEEEEECCCcEEEE
Confidence 3478899999999999999888999999999977654
No 104
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=48.03 E-value=8.6 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=24.7
Q ss_pred EEEEeCCCCceeeCHHHHHhcCCcccCC
Q 047037 38 VILIDSGSTHNSINAEVAQRVNLSPNAN 65 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~l~l~~~~~ 65 (85)
++.||||.+-.-+-.++|+++|+|.-..
T Consensus 129 L~fvDS~Ts~~S~a~~~A~~~gvp~~~r 156 (245)
T 2nly_A 129 AFIIDSGTSPHSLIPQLAEELEVPYATR 156 (245)
T ss_dssp CEEEECCCCSSCSHHHHHHHTTCCEEEC
T ss_pred CEEEcCCCCcccHHHHHHHHcCCCeEEe
Confidence 6788999999999999999999987643
No 105
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=46.32 E-value=7.1 Score=25.08 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=20.3
Q ss_pred CEEEEEEEeCCCCceeeCHHHHHhc
Q 047037 34 GKSVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 34 g~~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
|..+.+=|||||..+-|+..-.+.+
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~F 41 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEI 41 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEE
T ss_pred CCEEEEEecCCcCcceecceeEEEe
Confidence 5567778899999999998877654
No 106
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=46.24 E-value=8.7 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=24.5
Q ss_pred EEEEeCCCCceeeCHHHHHhcCCcccCC
Q 047037 38 VILIDSGSTHNSINAEVAQRVNLSPNAN 65 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~l~l~~~~~ 65 (85)
++.+|||.|-.-+-.++|+++|+|.-..
T Consensus 156 L~FlDS~Ts~~S~a~~~A~~~gvp~~~r 183 (261)
T 2qv5_A 156 LLFLDDGSSAQSLSGGIAKAISAPQGFA 183 (261)
T ss_dssp CEEEECSCCTTCCHHHHHHHHTCCEEEC
T ss_pred CEEEcCCCCcccHHHHHHHHcCCCeEEe
Confidence 5678999999999999999999987653
No 107
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=45.70 E-value=6.7 Score=26.81 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=17.7
Q ss_pred EEEEeCCCCceeeCHHHHHhc
Q 047037 38 VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~l 58 (85)
.+-+|||||..++-+.+++++
T Consensus 21 vIgLGsGST~~~~i~~L~~~~ 41 (225)
T 3l7o_A 21 IVGLGTGSTAYYFVEEVGRRV 41 (225)
T ss_dssp EEEECCSTTHHHHHHHHHHHH
T ss_pred EEEECCcHHHHHHHHHHHHhh
Confidence 467899999999999888863
No 108
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=44.68 E-value=49 Score=19.77 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=33.6
Q ss_pred cCcCCeEEEEEEECCEEEE-----EEE-e-CCCCceeeCHHHHHhcCCcccC
Q 047037 20 DQVLETMRIQGSIKGKSVV-----ILI-D-SGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 20 ~~~~~~~~~~g~i~g~~v~-----~Li-D-SGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.-.||+|++.-.|||+.+- |-- + .+...-.++.++.+++|++...
T Consensus 27 ~~~PG~Y~vdI~vN~~~~~~~~i~f~~~~~~~~~~pClt~~~L~~~Gv~~~~ 78 (125)
T 3bwu_D 27 ELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTAS 78 (125)
T ss_dssp SSCSEEEEEEEEETTEEEEEEEEEEEECSSTTSEEECCCHHHHHHTTBCGGG
T ss_pred CcCCcEEEEEEEECCeEccceEEEEEecCCCCcccccCCHHHHHHcCCCccc
Confidence 3468999999999998753 321 2 2345679999999999998764
No 109
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.65 E-value=43 Score=18.76 Aligned_cols=43 Identities=5% Similarity=0.132 Sum_probs=36.6
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.+..|++..+..|+.+.+=|+...|..-+-.+++++.+++...
T Consensus 14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~ 56 (96)
T 1wx8_A 14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADR 56 (96)
T ss_dssp CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTT
T ss_pred CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHH
Confidence 4577888877778888889999999999999999999988764
No 110
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=41.96 E-value=33 Score=19.53 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=35.2
Q ss_pred CcCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 21 QVLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 21 ~~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+..|.+..+ .+|+.+.+=|+.-.|..-|-..++++.|++..
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~ 60 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 45577888877 47888888899999999999999999998876
No 111
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.69 E-value=37 Score=18.93 Aligned_cols=42 Identities=5% Similarity=0.058 Sum_probs=33.1
Q ss_pred cCCeEEEEEEECCEEEEEEEeCC-----CCceeeCHHHHHhcCCccc
Q 047037 22 VLETMRIQGSIKGKSVVILIDSG-----STHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSG-----at~~Fi~~~~a~~l~l~~~ 63 (85)
....|++..+-.++...+=|+.. .|..-+-.+++++.|+|..
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~ 50 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS 50 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH
Confidence 34567777777777777778875 8888899999999998865
No 112
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=39.86 E-value=12 Score=26.29 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=27.8
Q ss_pred EeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 41 IDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 41 iDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
|=+|++|--+.+++|++||+++. +.-.-+-+||+.-
T Consensus 3 i~~g~~~~~la~~ia~~lg~~l~--~~~~~~F~dGE~~ 38 (286)
T 3lrt_A 3 IIALRSSLKLAARIAEELKTEPV--MPDERRFPDGELY 38 (286)
T ss_dssp EEECGGGHHHHHHHHHHTTSCEE--CCEEEECTTSCEE
T ss_pred EEECCCCHHHHHHHHHHhCCCee--eeEEEECCCCCEE
Confidence 34899999999999999999887 3444566777653
No 113
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=39.62 E-value=28 Score=21.71 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=23.8
Q ss_pred CceeeCHHHHHhcCCcccCCCcEEEEeCCCCE
Q 047037 46 THNSINAEVAQRVNLSPNANNRLEIMVAFGEK 77 (85)
Q Consensus 46 t~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~ 77 (85)
...+|+++.|+++||.-- ..++|....|..
T Consensus 53 ~~v~inp~dA~~lGI~dG--d~V~V~s~~G~v 82 (146)
T 2ki8_A 53 NYAEINEEDWNALGLQEG--DRVKVKTEFGEV 82 (146)
T ss_dssp SEEEECHHHHHHHTCCTT--CEEEEECSSCEE
T ss_pred CEEEECHHHHHHcCCCCC--CEEEEEeCCcEE
Confidence 457899999999996554 778888888853
No 114
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=38.89 E-value=11 Score=25.56 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=8.5
Q ss_pred EEEEEeCCCCceeeCHHHHHhc-CCcc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV-NLSP 62 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l-~l~~ 62 (85)
..+.+|||+|..++-+.++++- ++.+
T Consensus 22 ~~I~LdsGST~~~la~~L~~~~~~itv 48 (219)
T 1o8b_A 22 TIVGVGTGSTAAHFIDALGTMKGQIEG 48 (219)
T ss_dssp -CEEECCSCC---------------CC
T ss_pred CEEEEcChHHHHHHHHHHhccCCCEEE
Confidence 3567899999999999998653 3444
No 115
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=37.60 E-value=5.8 Score=27.14 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=17.8
Q ss_pred EEEEeCCCCceeeCHHHHHhc
Q 047037 38 VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~l 58 (85)
.+.+|||+|..++-+.++++.
T Consensus 23 ~IglgsGST~~~~~~~L~~~~ 43 (226)
T 2pjm_A 23 VIGLGTGSTAALFIRELGNRI 43 (226)
T ss_dssp EEEECCSHHHHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHhhh
Confidence 467899999999999998764
No 116
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=36.75 E-value=37 Score=18.14 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.1
Q ss_pred eEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 25 TMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 25 ~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.|.+..+. +|+.+.+=|+.-.|..-+-.+++++.|+|...
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~ 44 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 44 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGG
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHH
Confidence 45555554 67788888999999999999999999988763
No 117
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=36.15 E-value=49 Score=17.34 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=31.2
Q ss_pred EEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 26 MRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 26 ~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
|++..+.+|+...+=|+...|..-+-..++++.|+|..
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 42 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVA 42 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHH
Confidence 45555448888888999999999999999999998865
No 118
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=35.06 E-value=20 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.406 Sum_probs=34.4
Q ss_pred cCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 22 VLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 22 ~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
....|++..+ .+|+.+.+-|+.-.|..-+-.+++++.++|...
T Consensus 19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 62 (98)
T 4hcn_B 19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQ 62 (98)
T ss_dssp ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhH
Confidence 4466777777 578888899999999999999999999988764
No 119
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.03 E-value=67 Score=18.83 Aligned_cols=41 Identities=7% Similarity=0.230 Sum_probs=36.6
Q ss_pred CeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 24 ETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
..+.+.-+.+|+.+.+=||..+|..=+-.++.++-|+|...
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~ 48 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSK 48 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhH
Confidence 46778888899999999999999999999999999998874
No 120
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=34.64 E-value=18 Score=25.06 Aligned_cols=35 Identities=20% Similarity=0.045 Sum_probs=27.3
Q ss_pred eCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 42 DSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 42 DSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
=+|+++--+.+++|++||+++.+ .-.-+-+||+.-
T Consensus 4 ~~~~~~~~la~~ia~~l~~~l~~--~~~~~F~dGE~~ 38 (284)
T 1u9y_A 4 VSGSQSQNLAFKVAKLLNTKLTR--VEYKRFPDNEIY 38 (284)
T ss_dssp EECTTCHHHHHHHHHHTTCCEEC--EEEEECTTCCEE
T ss_pred EECCCCHHHHHHHHHHhCCeeee--eEEEECCCCCEE
Confidence 38999999999999999988873 444467788753
No 121
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=33.98 E-value=17 Score=21.45 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=34.9
Q ss_pred CeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 24 ETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 24 ~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..|++..+ .+|+.+.+-|+.-.|..-+-.+++++.++|..
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 74 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChH
Confidence 46888877 57889999999999999999999999998876
No 122
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=33.65 E-value=15 Score=25.62 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.1
Q ss_pred EEEEeCCCCceeeCHHHHHhc
Q 047037 38 VILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~l 58 (85)
.+.+|||+|..++-+.++++.
T Consensus 41 ~IgLgsGST~~~~a~~L~~~~ 61 (264)
T 1xtz_A 41 IIGIGSGSTVVYVAERIGQYL 61 (264)
T ss_dssp EEEECCCSSTHHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhHhh
Confidence 456899999999999999763
No 123
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=33.53 E-value=15 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.5
Q ss_pred EEEEeCCCCceeeCHHHHHh
Q 047037 38 VILIDSGSTHNSINAEVAQR 57 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~ 57 (85)
.+.+|||+|..++-+.++++
T Consensus 30 ~IgLgsGST~~~~~~~L~~~ 49 (244)
T 2f8m_A 30 TIGLGTGSTVFYVLERIDNL 49 (244)
T ss_dssp EEEECCSTTTHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhh
Confidence 45689999999999999876
No 124
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=33.11 E-value=48 Score=19.04 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=35.0
Q ss_pred cCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 22 VLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 22 ~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
.+..|++..+..|+.+.+=|+...|..-+-.+++++.|++..
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 63 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTD 63 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGG
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChh
Confidence 356788877777888888899999999999999999998865
No 125
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=33.04 E-value=38 Score=20.14 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=23.7
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 18 a~~~ia~~L~l~~g~~v~~i~Rlr~~d~~P~~~ 50 (145)
T 3ddv_A 18 PSSSEMEKLQLGPEDSILRMERIRFADDIPICF 50 (145)
T ss_dssp CCHHHHHHHTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHhCCcCCCCEEEEEEEEEeeCCCcEEE
Confidence 4688999999987652 556889999987654
No 126
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=31.74 E-value=40 Score=17.53 Aligned_cols=31 Identities=16% Similarity=0.530 Sum_probs=26.1
Q ss_pred CCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 33 KGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 33 ~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
+|+.+.+=++.-+|..-+-..++++.++|..
T Consensus 9 ~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~ 39 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 5677777888888999999999999998765
No 127
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=31.58 E-value=15 Score=27.22 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEEEE
Q 047037 44 GSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKLMS 80 (85)
Q Consensus 44 Gat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~~~ 80 (85)
|-+|-|+.+++|+.+|-+ ..+-+...++||.++..
T Consensus 175 GlS~~yva~~~a~~lgk~--~~~~Iv~HLGnGaSv~A 209 (384)
T 3khy_A 175 GTSHKYVSEQAAKILTQQ--KANVIVAHLGNGCSITA 209 (384)
T ss_dssp HHHHHHHHHHHHHHSCSS--CCCEEEEEESSSEEEEE
T ss_pred HHhHHHHHHHHHHHcCCC--ccCEEEEEeCCCcEeEE
Confidence 347889999999999976 56888999999977654
No 128
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=29.87 E-value=38 Score=24.58 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=29.0
Q ss_pred EEeCCCCceeeCHH---HHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 40 LIDSGSTHNSINAE---VAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 40 LiDSGat~~Fi~~~---~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
+|=+|++|--+.++ +|++||+++. +.-.-+-+||+.-
T Consensus 31 ~if~g~~~~~la~~~~~ia~~lg~~l~--~~~~~~F~dGE~~ 70 (379)
T 2ji4_A 31 VLFSANSNSSCMELSKKIAERLGVEMG--KVQVYQEPNRETR 70 (379)
T ss_dssp EEEECCCSGGGGHHHHHHHHHHTCCCC--CEEEEECTTSCEE
T ss_pred EEEECCCCHHHHHhHHHHHHHhCCceE--eeEEEECCCCCEE
Confidence 45599999999999 9999998877 3444567888754
No 129
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=29.82 E-value=54 Score=17.47 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=31.4
Q ss_pred eEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 25 TMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 25 ~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
+|.+..+. +|+.+.+-|+.-+|..-+-..++++.++|...
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~ 43 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 43 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHH
Confidence 35555543 56778888999999999999999999988764
No 130
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=29.63 E-value=44 Score=23.91 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=28.0
Q ss_pred EeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 41 IDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 41 iDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
|=+|+++--+.+++|++||+++. +.-.-+-+||+.-
T Consensus 6 if~g~~~~~La~~ia~~lg~~l~--~~~~~~F~dGE~~ 41 (326)
T 3s5j_B 6 IFSGSSHQDLSQKIADRLGLELG--KVVTKKFSNQETC 41 (326)
T ss_dssp EEECSSCCHHHHHHHHHTTCCCC--CEEEEECTTSCEE
T ss_pred EEECCCCHHHHHHHHHHhCCcee--eeEEeECCCCCEE
Confidence 44899999999999999998876 3444567777754
No 131
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=29.62 E-value=58 Score=22.71 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=35.0
Q ss_pred CcCCeEEEEEEECCEEEEEEEeC-----CCCceeeCHHHHHhcCCcccCCCcEE
Q 047037 21 QVLETMRIQGSIKGKSVVILIDS-----GSTHNSINAEVAQRVNLSPNANNRLE 69 (85)
Q Consensus 21 ~~~~~~~~~g~i~g~~v~~LiDS-----Gat~~Fi~~~~a~~l~l~~~~~~~~~ 69 (85)
...+.+...|+|+|++|.+...- ||-.....++.++-..+-....-|+.
T Consensus 107 ~~~avVtG~g~I~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~lPlI 160 (285)
T 2f9i_B 107 LKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFI 160 (285)
T ss_dssp CSSSEEEEEEEETTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEEEEECCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 46788999999999999888776 77777666766655554444444443
No 132
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=29.50 E-value=54 Score=20.41 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=36.0
Q ss_pred CcCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 21 QVLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 21 ~~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
..+..|.+..+ .+|+.+.+=|+...|..-+-.++.++.|+|...
T Consensus 16 ~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~ 60 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 60 (172)
T ss_dssp ---CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHH
Confidence 34577888887 788999999999999999999999999988763
No 133
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=29.28 E-value=57 Score=19.53 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=35.7
Q ss_pred eEEEeccccCcCCeEEEEEEECC-----EEEEEEEeCCCCceeeCHHHHHhcCCcccCC
Q 047037 12 ISLHDVARDQVLETMRIQGSIKG-----KSVVILIDSGSTHNSINAEVAQRVNLSPNAN 65 (85)
Q Consensus 12 iSl~A~~g~~~~~~~~~~g~i~g-----~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~ 65 (85)
+|++--......+.+++..++.. ..+.+-|+.-.|.--+-.++.++.|+|....
T Consensus 9 l~v~~~~~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 9 LSVQLKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp -----------CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred eEEEecCCcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 33333333445567777766654 6788889999999999999999999998853
No 134
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=28.99 E-value=31 Score=19.19 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.1
Q ss_pred ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 32 IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 32 i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.+|+.+.+-|+.-.|..-+-..++++.|+|.+.
T Consensus 8 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 40 (88)
T 4fbj_B 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQ 40 (88)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhH
Confidence 467788888899999999999999999988764
No 135
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=28.58 E-value=9.5 Score=26.66 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=18.1
Q ss_pred EEEEEeCCCCceeeCHHHHHhc
Q 047037 37 VVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~l 58 (85)
..+-+|||||..++-+.++++.
T Consensus 43 ~vIgLGsGST~~~~i~~L~~~~ 64 (255)
T 3hhe_A 43 MRLGIGSGSTVNEFIPLLGERV 64 (255)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred CEEEECCcHHHHHHHHHHHHhh
Confidence 3567899999999998888764
No 136
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=28.40 E-value=11 Score=25.54 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.4
Q ss_pred EEEEeCCCCceeeCHHHHHh
Q 047037 38 VILIDSGSTHNSINAEVAQR 57 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~ 57 (85)
.+.+|||+|..++-+.++++
T Consensus 25 ~I~LgsGST~~~~~~~L~~~ 44 (227)
T 1uj6_A 25 VVGLGTGSTARYAVLELARR 44 (227)
T ss_dssp EEEECCSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHhhh
Confidence 45689999999999999876
No 137
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=28.39 E-value=11 Score=25.60 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.5
Q ss_pred EEEEeCCCCceeeCHHHHHh
Q 047037 38 VILIDSGSTHNSINAEVAQR 57 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~ 57 (85)
.+.+|||+|..++-+.++++
T Consensus 23 ~I~LdsGST~~~~a~~L~~~ 42 (229)
T 1lk5_A 23 VIGLGTGSTTAYFIKLLGEK 42 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH
T ss_pred EEEEcChHHHHHHHHHHhhh
Confidence 45689999999999999876
No 138
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=28.35 E-value=50 Score=18.55 Aligned_cols=37 Identities=16% Similarity=0.436 Sum_probs=28.0
Q ss_pred EEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 27 RIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 27 ~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
++..+. +|+.+.+=|+.-.|..-+-..++++.|++..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~ 39 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGG
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChh
Confidence 343433 5677777788888888899999999998765
No 139
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=28.17 E-value=41 Score=19.98 Aligned_cols=31 Identities=6% Similarity=0.140 Sum_probs=23.7
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 21 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~ 53 (143)
T 3lhe_A 21 ADEIIAEKLGISVGDFVYKIIRLRIIHSIPTIM 53 (143)
T ss_dssp CCHHHHHHHTSCTTCEEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHhcCCCCCCEEEEEEEEEEECCcEEEE
Confidence 4688999999987652 455889999987654
No 140
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.85 E-value=79 Score=17.16 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.8
Q ss_pred cCCeEEEEEEE-CC-EEEEEE-EeCCCCceeeCHHHHHhcCCccc
Q 047037 22 VLETMRIQGSI-KG-KSVVIL-IDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 22 ~~~~~~~~g~i-~g-~~v~~L-iDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+.|.+..+. +| +.+.+- |+.-.|..-+-.+++++.++|..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~ 48 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPE 48 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTT
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChh
Confidence 34667777765 46 567774 89999999999999999998766
No 141
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.79 E-value=37 Score=20.16 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=37.6
Q ss_pred ccccCcCCeEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 17 VARDQVLETMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 17 ~~g~~~~~~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
.........|.+..+- .|+.+.+=|+..+|.--|-..++++-|+|.+.
T Consensus 20 ~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~q 68 (100)
T 1uh6_A 20 RGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNK 68 (100)
T ss_dssp CCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred ccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHH
Confidence 3333455667777764 47888888999999999999999999988764
No 142
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=27.52 E-value=31 Score=22.63 Aligned_cols=14 Identities=57% Similarity=0.757 Sum_probs=11.5
Q ss_pred CceeEEEeccccCc
Q 047037 9 TPKISLHDVARDQV 22 (85)
Q Consensus 9 ~~~iSl~A~~g~~~ 22 (85)
-|.|||||++....
T Consensus 67 YpsIsLHAIsrd~~ 80 (171)
T 1zyi_A 67 YPTISLHAVSRDLN 80 (171)
T ss_dssp SCCCSEEECCSSCS
T ss_pred cCeEEEEEEecCCC
Confidence 48999999988754
No 143
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=27.48 E-value=9.3 Score=25.86 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.0
Q ss_pred EEEEeCCCCceeeCHHHHHh
Q 047037 38 VILIDSGSTHNSINAEVAQR 57 (85)
Q Consensus 38 ~~LiDSGat~~Fi~~~~a~~ 57 (85)
.+.+|||+|..++-+.++++
T Consensus 23 ~I~LdsGST~~~la~~L~~~ 42 (219)
T 1m0s_A 23 IVGVGSGSTVNCFIEALGTI 42 (219)
T ss_dssp EEEECCSHHHHHHHHHHHTT
T ss_pred EEEEcChHHHHHHHHHHhcc
Confidence 45689999999999999865
No 144
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=26.81 E-value=57 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=26.2
Q ss_pred EEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeC
Q 047037 36 SVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVA 73 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~a 73 (85)
++.++.||.+ -|++++++++++.+. |+.|...
T Consensus 21 ki~IvtDSt~---dL~~e~~~~~~I~vv---PL~v~~~ 52 (298)
T 3jr7_A 21 SYKVIVDSCG---EFTPEMKADGGFEHV---ALGIQIE 52 (298)
T ss_dssp CEEEEEETTS---CCCHHHHHHSSEEEE---CCEEEET
T ss_pred CEEEEEECCC---CCCHHHHHhCCeEEE---EEEEEEC
Confidence 3788999986 478999999999988 6777763
No 145
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=26.69 E-value=71 Score=17.60 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=21.8
Q ss_pred eeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 48 NSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 48 ~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
.-|+..++++||+..- ..+.+.+.+|..+
T Consensus 15 v~iPk~~~~~lgl~~g--d~v~i~~~~~~ii 43 (82)
T 1mvf_D 15 VRIPATLMQALNLNID--DEVKIDLVDGKLI 43 (82)
T ss_dssp EECCHHHHHHTTCCTT--CBEEEEEETTEEE
T ss_pred EEECHHHHHHcCCCCC--CEEEEEEECCEEE
Confidence 3579999999997654 6788877777544
No 146
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.58 E-value=44 Score=17.35 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=25.8
Q ss_pred CCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 33 KGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 33 ~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
+|+.+.+=++.-+|..-+-..++++.|+|..
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~ 39 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 5667777788888888899999999998765
No 147
>3hfi_A Putative regulator; structural geonomics, PSI, MCSG, structural genom protein structure initiative, midwest center for structural genomics; 2.20A {Escherichia coli O6}
Probab=26.45 E-value=61 Score=19.78 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=24.0
Q ss_pred eCHHHHHhcCCcccC--CCcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNA--NNRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~--~~~~~V~~anG~~~~~ 80 (85)
-++.+|++|+++... ..-.+++.+||+.+.-
T Consensus 36 a~~~ia~~L~l~~g~~v~~i~Rlr~~d~~P~~~ 68 (170)
T 3hfi_A 36 ANRYVAEKLRITPGQDILYLERLRSIGDEKAML 68 (170)
T ss_dssp CCHHHHHHHTSCTTCEEEEEEEEEESSSSEEEE
T ss_pred CCHHHHHhcCcCCCCEEEEEEEEEEECCceEEE
Confidence 478999999998754 2556889999987653
No 148
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=26.05 E-value=1.1e+02 Score=21.01 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=23.7
Q ss_pred eeEEEeccccCc-----CCeEEEEEEECCEEEEEEEeCCCCcee
Q 047037 11 KISLHDVARDQV-----LETMRIQGSIKGKSVVILIDSGSTHNS 49 (85)
Q Consensus 11 ~iSl~A~~g~~~-----~~~~~~~g~i~g~~v~~LiDSGat~~F 49 (85)
.+....+.+++. +.--.+.|+++|++|.+| .|--|.+
T Consensus 51 ~~py~~~p~fp~~tv~gh~~~~~~G~l~G~~V~~~--~G~gh~~ 92 (268)
T 1g2o_A 51 VLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVL--AGRIHAY 92 (268)
T ss_dssp EEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEE--ECCCCGG
T ss_pred EeecccCCCCCCCcccCCCCeEEEEEECCEEEEEE--ECCCcCC
Confidence 444444444443 233456799999999999 4887743
No 149
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=25.85 E-value=1.1e+02 Score=18.10 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=38.3
Q ss_pred CcCCeEEEEEEECCEEEEEEE-eCCCC----ceeeCHHHHHhcCCcccCCCcEEEEe
Q 047037 21 QVLETMRIQGSIKGKSVVILI-DSGST----HNSINAEVAQRVNLSPNANNRLEIMV 72 (85)
Q Consensus 21 ~~~~~~~~~g~i~g~~v~~Li-DSGat----~~Fi~~~~a~~l~l~~~~~~~~~V~~ 72 (85)
+-+...+++-.-||+.+.+-| |-|-. ..=||+..|++||+.-.-..++++.+
T Consensus 37 P~gt~vrVtNl~nGksVvVrVnDRGP~~~griIDLS~aAa~~Lg~~~~G~~~V~ve~ 93 (95)
T 4avr_A 37 PFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAPVRIES 93 (95)
T ss_dssp CTTCEEEEEETTTCCEEEEEEEECCCCSTTEEEEECHHHHHHHTCTTTSCEEEEEEE
T ss_pred CCCcEEEEEECCCCcEEEEEEccCCCCCCCCEEEeCHHHHHHhCCcCCCEEEEEEEE
Confidence 445667777778999987776 66654 35688999999998666567777765
No 150
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=25.81 E-value=62 Score=19.79 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=23.6
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 42 a~~~ia~~L~l~~g~~v~~i~Rlr~~dg~P~~~ 74 (173)
T 2ikk_A 42 ASKPIAEKLQIQPESPVVELKRILYNDDQPLTF 74 (173)
T ss_dssp CCHHHHHHHTCCTTCEEEEEEEEEESSSSEEEE
T ss_pred CCHHHHHhcCCCCCCEEEEEEEEEeeCCccEEE
Confidence 4789999999876542 445888899988754
No 151
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=25.74 E-value=64 Score=19.20 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=23.9
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEEe
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMSS 81 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~~ 81 (85)
-+..+|++|+++.... .-.+++.+||+.+.-.
T Consensus 31 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~~ 64 (162)
T 3cnv_A 31 APAEIARALELRAGETVVTIRRQLSMNHMPTVID 64 (162)
T ss_dssp CCHHHHHHHTCCTTCEEEEEEEEEESSSSEEEEE
T ss_pred CCHHHHHHcCCCCCCEEEEEEEEEEeCCceEEEE
Confidence 4688999999886542 4468889999887543
No 152
>2g7z_A Conserved hypothetical protein SPY1493; long-fatty acid binding protein, lipid binding protein, PSI, structural genomics; HET: MSE HXA; 2.05A {Streptococcus pyogenes}
Probab=25.65 E-value=62 Score=22.28 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=26.6
Q ss_pred EEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCC
Q 047037 36 SVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAF 74 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~an 74 (85)
.+.++.||.+ -|++++++++++.+. |+.|...+
T Consensus 6 ki~IvtDSt~---dl~~e~~~~~~I~vv---Pl~v~~~~ 38 (282)
T 2g7z_A 6 TIKIVTDSSI---TIEPELIKALDITVV---PLSVMIDS 38 (282)
T ss_dssp CEEEEEETTB---CCCHHHHHHHTCEEE---CCEEEETT
T ss_pred CeEEEEecCC---CCCHHHHHhCCeEEE---EEEEEECC
Confidence 3678899986 478999999999988 77777744
No 153
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=25.28 E-value=84 Score=16.61 Aligned_cols=39 Identities=8% Similarity=0.141 Sum_probs=30.1
Q ss_pred eEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 25 TMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 25 ~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
+|.+..+ .+|+.+.+=|+.-.|..-+-..++++.|+|..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~ 42 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 42 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGG
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcc
Confidence 3445444 35677778889888888899999999998876
No 154
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.27 E-value=98 Score=17.74 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCeEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 23 LETMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 23 ~~~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
...|++..+. +|+.+.+=|+.-.|..-+-.+++++.|++...
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 63 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGS 63 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTT
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCccc
Confidence 4668888875 78898899999999989999999999987663
No 155
>2ooi_A SA0254 protein; staphylocococcus aureus, structural genomics, PSI-2, MCSG, P structure initiative; 2.60A {Staphylococcus aureus subsp} SCOP: d.190.1.2
Probab=25.25 E-value=69 Score=19.19 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=23.2
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||..+.-
T Consensus 33 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~ 65 (162)
T 2ooi_A 33 PPKSVQDELQLNADDTVYYLERLRFVDDDVLCI 65 (162)
T ss_dssp CCHHHHHHTTCCSSSCEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHhcCcCCCCEEEEEEEEEeECCcEEEE
Confidence 3789999999876642 445888899987653
No 156
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=24.99 E-value=1.4e+02 Score=19.99 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=33.4
Q ss_pred CEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCE
Q 047037 34 GKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEK 77 (85)
Q Consensus 34 g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~ 77 (85)
+-.+.+-||+-+|.-=+=..+++++||.-..-..+.+...+|..
T Consensus 10 d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~ 53 (294)
T 1ef1_A 10 DAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFS 53 (294)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCE
T ss_pred CceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCce
Confidence 33678999999999999999999999876544556655556653
No 157
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.33 E-value=1.1e+02 Score=17.45 Aligned_cols=42 Identities=5% Similarity=0.024 Sum_probs=32.4
Q ss_pred CCeEEEEEEE--CC---EEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 23 LETMRIQGSI--KG---KSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 23 ~~~~~~~g~i--~g---~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
...|++..+. ++ +.+.+=|+.-.|..-+-..++++.|++.+.
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~ 51 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEE 51 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGG
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHH
Confidence 3457776666 33 677777899999999999999999988764
No 158
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=24.26 E-value=1.1e+02 Score=21.65 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=36.6
Q ss_pred CeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 24 ETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
..|.+..+-+|+...+=|+..+|..=+-.+++++.|+|.+.
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~ 44 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPER 44 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGG
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHH
Confidence 45777888899999999999999999999999999988875
No 159
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=24.15 E-value=85 Score=16.70 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.7
Q ss_pred ceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 47 HNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 47 ~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
..-|+.++.++||+..- ..+.+.+.+|..+
T Consensus 23 qItIPkeiR~~Lgi~~G--d~l~i~~~~~~Ii 52 (59)
T 1yfb_A 23 RVVIPIELRRTLGIAEK--DALEIYVDDEKII 52 (59)
T ss_dssp EEECCHHHHHHTTCCTT--CEEEEEEETTEEE
T ss_pred EEEeCHHHHHHcCCCCC--CEEEEEEECCEEE
Confidence 34789999999996544 7888888777543
No 160
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=23.97 E-value=52 Score=23.12 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=28.3
Q ss_pred EeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 41 IDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 41 iDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
|=+|+++--+.+++|++||+++.+ .-.-+-+||+.-
T Consensus 12 i~~~~~~~~la~~ia~~lg~~l~~--~~~~~F~dGE~~ 47 (317)
T 1dku_A 12 IFSLNSNPELAKEIADIVGVQLGK--CSVTRFSDGEVQ 47 (317)
T ss_dssp EEECSSCHHHHHHHHHHHTCCCCC--EEEEECTTSCEE
T ss_pred EEECCCCHHHHHHHHHHhCCeeEe--eEEEECCCCCEE
Confidence 449999999999999999988873 444567788654
No 161
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=23.70 E-value=70 Score=18.90 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=23.1
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 21 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~ 53 (152)
T 2ogg_A 21 PSELIQKQLRANLDDDIWEVIRSRKIDGEHVIL 53 (152)
T ss_dssp CCHHHHHHHTCCTTCCEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHhcCCCCCCeEEEEEEEEeECCcEEEE
Confidence 3689999999876642 445788899987654
No 162
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.62 E-value=1e+02 Score=18.47 Aligned_cols=41 Identities=5% Similarity=0.144 Sum_probs=34.6
Q ss_pred CCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 23 LETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 23 ~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+|++..+..|+.+.+=|+...|..-|-.++.++.|++..
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 70 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTD 70 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSS
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcc
Confidence 46788877766888888999999999999999999998765
No 163
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.43 E-value=34 Score=18.40 Aligned_cols=39 Identities=18% Similarity=0.524 Sum_probs=29.8
Q ss_pred EEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 26 MRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 26 ~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
|.+..+ .+|+.+.+-|+.-+|..-+-..++++.++|...
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~ 43 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQ 43 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGG
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHH
Confidence 444444 356677778899899999999999999988763
No 164
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=23.15 E-value=1.3e+02 Score=19.07 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.1
Q ss_pred CeEEEEEEECCEEEEEEEeCCCCc
Q 047037 24 ETMRIQGSIKGKSVVILIDSGSTH 47 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~~LiDSGat~ 47 (85)
..|.+..+|||+.+.+-++.|.|.
T Consensus 8 ~~m~i~~~ing~~~~~~v~~~~tl 31 (168)
T 1t3q_A 8 QLMRISATINGKPRVFYVEPRMHL 31 (168)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBH
T ss_pred CcceEEEEECCEEEEEecCCCCcH
Confidence 567899999999999888888664
No 165
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=23.14 E-value=1e+02 Score=16.87 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred eEEEEEEE-CCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 25 TMRIQGSI-KGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 25 ~~~~~g~i-~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
.|++..+. +|+.+.+=|+.-.|..-+-.+++++.|+|..
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 43 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTT
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 46665554 4677778889999999999999999998866
No 166
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.48 E-value=1.2e+02 Score=17.30 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=34.8
Q ss_pred ccCcCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 19 RDQVLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 19 g~~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
+...+..|++..+..+....+=|+.-.|..-+-.+++++.|++..
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~ 60 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPD 60 (100)
T ss_dssp CSCCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred CCCCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChh
Confidence 344567888877765444677888889999999999999998865
No 167
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=22.13 E-value=45 Score=18.79 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=31.5
Q ss_pred ccCcCCeEEEEEEECCEEEEEEEeCCCCceeeCHHHHHhcCCcccC
Q 047037 19 RDQVLETMRIQGSIKGKSVVILIDSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 19 g~~~~~~~~~~g~i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
|..-+..|++..+. |+.+.+=|+.-.|..-+-.+++++.|+|...
T Consensus 13 ~~~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~ 57 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPED 57 (93)
T ss_dssp -------CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGG
T ss_pred CCCCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhH
Confidence 33344567776666 7788888999999999999999999988663
No 168
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=21.91 E-value=61 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=27.6
Q ss_pred EeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 41 IDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 41 iDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
|=+|+++--+.+++|++||+++. +.-.-+-+||+.-
T Consensus 10 i~~g~~~~~La~~ia~~lg~~l~--~~~~~~F~dGE~~ 45 (319)
T 3dah_A 10 VFTGNANPALAQEVVKILGIPLG--KAMVSRFSDGEIQ 45 (319)
T ss_dssp EEECSSCHHHHHHHHHHHTSCCC--CEEEEECTTSCEE
T ss_pred EEECCCCHHHHHHHHHHhCCcee--eeEEEECCCCCEE
Confidence 34899999999999999998776 3444556777653
No 169
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=21.69 E-value=44 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCC
Q 047037 35 KSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFG 75 (85)
Q Consensus 35 ~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG 75 (85)
..+.++.||.+ -|++++++++++.+. |+.|...+.
T Consensus 3 ~ki~IvtDSt~---dl~~e~~~~~~I~vv---Pl~v~~~~~ 37 (297)
T 3nyi_A 3 AMYKIVSDSAC---DLSKEYLEKHDVTIV---PLSVSFDGE 37 (297)
T ss_dssp -CCEEEEEGGG---CCCHHHHHHHTEEEE---CCEEESSSS
T ss_pred CCEEEEEecCC---CCCHHHHHhCCeEEE---EEEEEECCE
Confidence 45678999975 588999999999888 777877443
No 170
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=21.65 E-value=64 Score=19.00 Aligned_cols=31 Identities=6% Similarity=0.035 Sum_probs=23.1
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 20 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~ 52 (149)
T 2p19_A 20 ASSAIAEKLGVSAGDEVLLIRRLRSTGDIPVAI 52 (149)
T ss_dssp CCHHHHHHHTSCTTCEEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHHcCcCCCCEEEEEEEEEeECCeeEEE
Confidence 3789999999876542 445888899987653
No 171
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=21.65 E-value=63 Score=22.16 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=39.7
Q ss_pred cCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCC
Q 047037 22 VLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFG 75 (85)
Q Consensus 22 ~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG 75 (85)
..+.+.++.. .+|....+-||+-+|..-+=..+++++||.-..-..+.+.-.+|
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~ 68 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNAT 68 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETT
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCC
Confidence 4456666665 48899999999999999999999999998854345555554444
No 172
>2fa1_A Probable transcriptional regulator PHNF; PNHF, APC5558, effector binding DO PSI, protein structure initiative, MCSG; HET: BDF; 1.70A {Escherichia coli} SCOP: d.190.1.2
Probab=21.55 E-value=65 Score=19.19 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=23.2
Q ss_pred eCHHHHHhcCCcccCC--CcEEEEeCCCCEEEE
Q 047037 50 INAEVAQRVNLSPNAN--NRLEIMVAFGEKLMS 80 (85)
Q Consensus 50 i~~~~a~~l~l~~~~~--~~~~V~~anG~~~~~ 80 (85)
-+..+|++|+++.... .-.+++.+||+.+.-
T Consensus 32 a~~~ia~~L~l~~~~~v~~i~Rlr~~d~~P~~~ 64 (160)
T 2fa1_A 32 ASGHVADALGITEGENVIHLRTLRRVNGVALCL 64 (160)
T ss_dssp CCHHHHHHHTSCTTSEEEEEEEEEEETTEEEEE
T ss_pred CCHHHHHhcCcCCCCeEEEEEEEEeeCCeEEEE
Confidence 4789999999876542 445888899987653
No 173
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.24 E-value=1.1e+02 Score=17.46 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=37.8
Q ss_pred cCCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 22 VLETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 22 ~~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
.+.+|.+... .+|+++.+-|..-.+..=|=..++++.|++.. .++..- +|+.+
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~---~~rf~F-dG~~l 57 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMR---QIRFRF-DGQPI 57 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGG---GEEEEE-TTEEC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcc---cEEEEE-CCEEc
Confidence 3466777776 37788999999999988899999999998765 444443 34433
No 174
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=21.23 E-value=15 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=17.5
Q ss_pred EEEEEeCCCCceeeCHHHHHh
Q 047037 37 VVILIDSGSTHNSINAEVAQR 57 (85)
Q Consensus 37 v~~LiDSGat~~Fi~~~~a~~ 57 (85)
..+-+|||||..++-+.++++
T Consensus 28 ~~IglgsGST~~~~i~~L~~~ 48 (224)
T 3kwm_A 28 ITLGVGTGSTVGFLIEELVNY 48 (224)
T ss_dssp EEEEECCSHHHHHHHHHGGGC
T ss_pred CEEEECCcHHHHHHHHHHHhh
Confidence 356789999999998888876
No 175
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=21.03 E-value=87 Score=17.28 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=34.4
Q ss_pred CCeEEEEEE-ECCEEEEEEEeCCCCceeeCHHHHHhcCCccc
Q 047037 23 LETMRIQGS-IKGKSVVILIDSGSTHNSINAEVAQRVNLSPN 63 (85)
Q Consensus 23 ~~~~~~~g~-i~g~~v~~LiDSGat~~Fi~~~~a~~l~l~~~ 63 (85)
..+|++..+ ++|+.+.+=|+...|..-+-.+++++.|+|..
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 49 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVS 49 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 456777765 57888888899999999999999999998766
No 176
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=20.73 E-value=67 Score=17.71 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=27.5
Q ss_pred EEEEEEECCEEE-EEEEeCCCCceeeCHHHHHhcCCcccCCCcEEEEeCCCCEE
Q 047037 26 MRIQGSIKGKSV-VILIDSGSTHNSINAEVAQRVNLSPNANNRLEIMVAFGEKL 78 (85)
Q Consensus 26 ~~~~g~i~g~~v-~~LiDSGat~~Fi~~~~a~~l~l~~~~~~~~~V~~anG~~~ 78 (85)
|+++.+++|..- ..=+..|+|. .++.++|+++.+.. +-.-||+.+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv----~dLL~~Lgl~~~~V----vV~vNG~~v 46 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTY----ADLVRAVDLSPHEV----TVLVDGRPV 46 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSH----HHHHHTTCCCSSCC----CEECCCCCC
T ss_pred CEEEEEEeCccceeEEcCCCCcH----HHHHHHcCCCcceE----EEEECCEEC
Confidence 455566666541 2346667664 57889999888743 344477654
No 177
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=20.53 E-value=73 Score=19.42 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEEEEEeCCCCceeeCHHHHHhc
Q 047037 36 SVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
+=+++|=||...-|+++++.+.|
T Consensus 69 pevliiGtG~~~~~l~p~~~~~l 91 (128)
T 2fi9_A 69 IEVLLIGTGVELLRLPEELRVLL 91 (128)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHH
T ss_pred CCEEEECCCCCCCCCCHHHHHHH
Confidence 45678899999999999987554
No 178
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=20.48 E-value=87 Score=19.59 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=31.1
Q ss_pred CeEEEEEEECCEEEE--EEEeCCCCceeeC--HHHHHhcCCcccCC
Q 047037 24 ETMRIQGSIKGKSVV--ILIDSGSTHNSIN--AEVAQRVNLSPNAN 65 (85)
Q Consensus 24 ~~~~~~g~i~g~~v~--~LiDSGat~~Fi~--~~~a~~l~l~~~~~ 65 (85)
=+|++.|.|+|+++. |-+-=--..||.+ .++|++.||+....
T Consensus 41 ~~f~m~Gei~gk~f~E~F~L~rD~AfnFa~~~tR~a~~hGlp~~~~ 86 (125)
T 2k4v_A 41 VHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKFG 86 (125)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTGGGHHHHHHHHHHHTTCCGGGC
T ss_pred EEEEEEEEECCEeccceeeccHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 478999999999964 4444445558876 47888999988753
No 179
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=20.29 E-value=74 Score=19.59 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEEeCCCCceeeCHHHHHhc---CCccc
Q 047037 36 SVVILIDSGSTHNSINAEVAQRV---NLSPN 63 (85)
Q Consensus 36 ~v~~LiDSGat~~Fi~~~~a~~l---~l~~~ 63 (85)
+=+++|-||...-|+++++.+.| |+.++
T Consensus 65 pevliiGTG~~~~~l~p~~~~~l~~~GI~vE 95 (132)
T 2gm2_A 65 PAVILLGTGERQQFPSTDVLAACLTRGIGLE 95 (132)
T ss_dssp CSEEEEECTTSCCCCCHHHHHHHHHHTCEEE
T ss_pred CCEEEECCCCCCCcCCHHHHHHHHHcCCEEE
Confidence 44678899999999999987544 54444
No 180
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=20.27 E-value=74 Score=19.74 Aligned_cols=25 Identities=4% Similarity=0.128 Sum_probs=20.5
Q ss_pred CEEEEEEEeCCCCceeeCHHHHHhc
Q 047037 34 GKSVVILIDSGSTHNSINAEVAQRV 58 (85)
Q Consensus 34 g~~v~~LiDSGat~~Fi~~~~a~~l 58 (85)
.++=+++|-||...-|+++++.+.|
T Consensus 66 p~pevliiGTG~~~~~l~p~l~~~l 90 (135)
T 2fvt_A 66 NAIDTLIVGTGADVWIAPRQLREAL 90 (135)
T ss_dssp TSCSEEEEECTTSCCCCCHHHHHHH
T ss_pred CCCCEEEEcCCCCCCcCCHHHHHHH
Confidence 3455788999999999999998655
No 181
>3rfz_B Outer membrane usher protein, type 1 fimbrial SYN; beta-barrel, pilus assembly, outer-membrane, cell adhesion-T protein-chaperone complex; 2.80A {Escherichia coli} PDB: 3ohn_A 1zdv_A
Probab=20.01 E-value=2.1e+02 Score=22.95 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=33.9
Q ss_pred eEEEeccccCcCCeEEEEEEECCEEEE---EEE----eCCCCceeeCHHHHHhcCCcccC
Q 047037 12 ISLHDVARDQVLETMRIQGSIKGKSVV---ILI----DSGSTHNSINAEVAQRVNLSPNA 64 (85)
Q Consensus 12 iSl~A~~g~~~~~~~~~~g~i~g~~v~---~Li----DSGat~~Fi~~~~a~~l~l~~~~ 64 (85)
+|..+-.+.-.|+++.+.-.||++.+- +-+ |.+...-.|++++-+++|++...
T Consensus 19 ls~f~~~~~~~pG~Y~vdi~vN~~~~~~~~v~f~~~~~~~~~~~Clt~~~L~~~Gv~~~~ 78 (843)
T 3rfz_B 19 LSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTAS 78 (843)
T ss_dssp -------CCCCCEEEEEEEEETTEEEEEEEEEEEECSSTTSEEECCCHHHHHHTTBCGGG
T ss_pred HHHHhcCCCCCCeEEEEEEEECCeEccceEEEEEecCCCCceeEEECHHHHHHcCCCccc
Confidence 333333333468999999999998752 333 12233568999999999998764
Done!