BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047041
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 2  EWCIADGQTPDDELQMALDWACGKGGADCNKLQAKQPCYFPNTLRDHASYAFNDYYQKFK 61
           WC+      DD+L   +++AC +G  DC  +Q    C+ PNT++ HA+Y  N YYQ   
Sbjct: 12 SWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAG 70

Query: 62 HQGATCYFHAAAMITDLDPSHRSCKF 87
               C F   A +T+ +PS+ +C F
Sbjct: 71 RNSWNCDFSQTATLTNTNPSYGACNF 96


>pdb|2IVF|B Chain B, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
          Length = 352

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 37  QPCYFPNTLRDHASYAFNDYYQKFKHQGATCYFHAAAMITDLDPS 81
           QP   P  +     + FN     ++ +G T +FH  +  T  DP+
Sbjct: 81  QPGVLPTLIDSGDDFQFNHKEVFYEGKGQTVHFHPTSKSTGKDPA 125


>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
           Study At 2.1 Angstroms Resolution Of Two Enzymes From
           Aspergillus
          Length = 484

 Score = 25.0 bits (53), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 31  NKLQAKQPCYFPNTLRDHASYAFNDY---YQKFKHQGATCYFHAAAMITDLD 79
           + L A+      + + DH  YA N     Y  F    ++ YFH   +ITD D
Sbjct: 105 DALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWD 156


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.473 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,225,756
Number of Sequences: 62578
Number of extensions: 115930
Number of successful extensions: 225
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 4
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)