Query 047041
Match_columns 91
No_of_seqs 127 out of 716
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jon_A Beta-1,3-glucanase; oli 100.0 1.1E-41 3.7E-46 221.8 9.9 90 1-91 11-100 (101)
2 2w61_A GAS2P, glycolipid-ancho 99.9 1.1E-28 3.6E-33 197.0 5.1 85 2-89 397-493 (555)
3 2v33_A E1 envelope glycoprotei 54.0 4 0.00014 25.4 0.8 22 68-89 20-41 (91)
4 2gsv_A Hypothetical protein YV 39.6 12 0.00042 22.2 1.3 10 51-60 28-37 (80)
5 3j0f_E E1 envelope glycoprotei 27.6 32 0.0011 26.7 2.2 22 68-89 311-332 (439)
6 3j0c_A E1 envelope glycoprotei 24.8 32 0.0011 26.7 1.7 22 68-89 311-332 (442)
7 1i9w_A Fusion protein E1; enve 22.0 47 0.0016 25.3 2.1 22 68-89 311-332 (390)
8 2wfu_B Probable insulin-like p 20.3 66 0.0022 15.2 1.8 14 12-25 7-20 (26)
9 3n40_F E1 envelope glycoprotei 19.8 45 0.0015 25.5 1.6 22 68-89 313-334 (393)
10 3muu_A Structural polyprotein; 19.5 50 0.0017 27.4 1.9 22 68-89 671-692 (750)
No 1
>2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea}
Probab=100.00 E-value=1.1e-41 Score=221.78 Aligned_cols=90 Identities=33% Similarity=0.740 Sum_probs=86.8
Q ss_pred CeeeeeCCCCCHHHHHHHHHHHhccCcccccccccCcCcCCCCChhhhHhHHHHHHHHHhcCCCccccCCcceEEeecCC
Q 047041 1 MEWCIADGQTPDDELQMALDWACGKGGADCNKLQAKQPCYFPNTLRDHASYAFNDYYQKFKHQGATCYFHAAAMITDLDP 80 (91)
Q Consensus 1 ~~wCV~~~~~~~~~l~~~l~~aCg~~~~dC~~I~~~g~c~~p~t~~~~~Sya~N~YYq~~~~~~~aCdF~G~a~i~~~~p 80 (91)
++|||+|+++++++||++||||||++ +||++|++||+||+|+++++|||||||+|||++++..++|||+|+|+|+++||
T Consensus 11 ~~wCVak~~~~~~~l~~~ldyACg~g-aDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~dP 89 (101)
T 2jon_A 11 GSWCVPKPGVSDDQLTGNINYACSQG-IDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNTNP 89 (101)
T ss_dssp SCEEEECTTSCHHHHHHHHHHHTTTS-SSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESSCC
T ss_pred CcEEEECCCCCHHHHHHHHHHHcCCC-CCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeecCC
Confidence 47999999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCC
Q 047041 81 SHRSCKFEYRP 91 (91)
Q Consensus 81 s~~~C~~~~~~ 91 (91)
|.++|+|+++.
T Consensus 90 S~g~C~f~~~~ 100 (101)
T 2jon_A 90 SYGACNFPSGS 100 (101)
T ss_dssp CCSSSCCCCSC
T ss_pred CCCceecCCCC
Confidence 99999999753
No 2
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A*
Probab=99.95 E-value=1.1e-28 Score=197.01 Aligned_cols=85 Identities=15% Similarity=0.271 Sum_probs=81.4
Q ss_pred eeeeeCCC-CCHHHHHHHHHHHhccCcccccccccCcC-----cCCCCChhhhHhHHHHHHHHHhcCCCccccCCcc---
Q 047041 2 EWCIADGQ-TPDDELQMALDWACGKGGADCNKLQAKQP-----CYFPNTLRDHASYAFNDYYQKFKHQGATCYFHAA--- 72 (91)
Q Consensus 2 ~wCV~~~~-~~~~~l~~~l~~aCg~~~~dC~~I~~~g~-----c~~p~t~~~~~Sya~N~YYq~~~~~~~aCdF~G~--- 72 (91)
+|||++++ +++++||++|+||||+ +||++|++||+ ||+||++++|||||||+|||++++..++|||+|+
T Consensus 397 ~~Cv~~~~~~~~~~l~~~~~yaC~~--~dC~~I~~~g~~g~yG~~~~~~~~~~~Sya~n~yyq~~~~~~~~C~F~g~~~~ 474 (555)
T 2w61_A 397 LPCEIVPFGAESGKYEEYFSYLCSK--VDCSDILANGKTGEYGEFSDCSVEQKLSLQLSKLYCKIGANDRHCPLNDKNVY 474 (555)
T ss_dssp CSEEECCTTCCGGGHHHHHHHHTTT--SCGGGGCEETTTTEECTTTTSCHHHHHHHHHHHHHHHHCCCSSCCSCCCTTEE
T ss_pred CeeecCCCCCCHHHHHHHHHHHhCc--CCCccccCCCcCCCccccCCCCHHHHHHHHHHHHHHHcCCCCCCCCCCCCccc
Confidence 59999999 9999999999999998 89999999999 5999999999999999999999999999999999
Q ss_pred ---eEEeecCCCCCceeeec
Q 047041 73 ---AMITDLDPSHRSCKFEY 89 (91)
Q Consensus 73 ---a~i~~~~ps~~~C~~~~ 89 (91)
|+|+ ++||.++|+|++
T Consensus 475 ~~~a~~~-~~~s~~~C~~~~ 493 (555)
T 2w61_A 475 FNLESLQ-PLTSESICKNVF 493 (555)
T ss_dssp ECGGGGS-CCCTTCTTHHHH
T ss_pred ccceEEE-eCCCCCchHhHH
Confidence 9999 788999999865
No 3
>2v33_A E1 envelope glycoprotein; transmembrane, viral protein; 1.55A {Semliki forest virus} SCOP: b.1.18.4
Probab=53.97 E-value=4 Score=25.38 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=17.5
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+......|.|..++
T Consensus 20 DFGGvatl~Y~a~k~GkCaVHs 41 (91)
T 2v33_A 20 DFGGVLTLTYKTNKNGDCSVHS 41 (91)
T ss_dssp EEEEEEEEEEEESSCEEEEEEC
T ss_pred CCCCeEEEEEecCCCccceeec
Confidence 8999999987655558887765
No 4
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=39.58 E-value=12 Score=22.24 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q 047041 51 YAFNDYYQKF 60 (91)
Q Consensus 51 ya~N~YYq~~ 60 (91)
-|||+||..-
T Consensus 28 hAmNaYYrsV 37 (80)
T 2gsv_A 28 HAMNSYYRSV 37 (80)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4899999863
No 5
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=27.57 E-value=32 Score=26.68 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=18.2
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (439)
T 3j0f_E 311 DFGGMATLQYVSDREGQCPVHS 332 (439)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999997766668898765
No 6
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=24.85 E-value=32 Score=26.69 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=18.1
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvatl~Y~~~k~GkCaVHs 332 (442)
T 3j0c_A 311 DFGGIATVKYSASKSGKCAVHV 332 (442)
T ss_dssp SCCEEEEEEEEESSCEEEEEEC
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999987666668898775
No 7
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=21.98 E-value=47 Score=25.35 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=17.6
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+......|.|..++
T Consensus 311 DfGGvat~~Y~~~k~GkCaVHs 332 (390)
T 1i9w_A 311 DFGGVLTLTYKTNKNGDCSVHS 332 (390)
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 7999999997666668887764
No 8
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=20.35 E-value=66 Score=15.24 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcc
Q 047041 12 DDELQMALDWACGK 25 (91)
Q Consensus 12 ~~~l~~~l~~aCg~ 25 (91)
..+|-++|..+|+.
T Consensus 7 G~~L~eaL~~vC~~ 20 (26)
T 2wfu_B 7 GPALMDMLRVACPN 20 (26)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHhc
Confidence 46788999999975
No 9
>3n40_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 2xfb_A
Probab=19.79 E-value=45 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.6
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+......|.|..++
T Consensus 313 DfGGvat~~Y~~~k~GkCaVHs 334 (393)
T 3n40_F 313 DFGGVAIIKYAASKKGKCAVHS 334 (393)
T ss_dssp SCCEEEEEEEEESSCEEEEEEE
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999987655558887765
No 10
>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein; HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A 3muw_U 1z8y_A 1z8y_B
Probab=19.46 E-value=50 Score=27.36 Aligned_cols=22 Identities=14% Similarity=0.227 Sum_probs=17.2
Q ss_pred cCCcceEEeecCCCCCceeeec
Q 047041 68 YFHAAAMITDLDPSHRSCKFEY 89 (91)
Q Consensus 68 dF~G~a~i~~~~ps~~~C~~~~ 89 (91)
||+|.|+|+....-.|.|..++
T Consensus 671 DfGG~atl~y~~~k~GkCavHs 692 (750)
T 3muu_A 671 DFGGMATLQYVSDREGQCPVHS 692 (750)
T ss_dssp SSCEEEEEEEEESSCCCEECEE
T ss_pred CcCceEEEEEecCCCcccceec
Confidence 8999999986655558887765
Done!