BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047042
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167
V WT EE F GL K G+ W IS K + +RT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYF 54
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 32.0 bits (71), Expect = 0.41, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF-----VSTRTPTQVASHAQKYFLRL 170
++K V WT E H KFL ++ LG R + +K V T VASH QK+ + L
Sbjct: 3 QKKPRVLWTHELHNKFLAAVDHLGVE--RAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 31.6 bits (70), Expect = 0.53, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 123 WTEEEHRKFLMGL-----EKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRL 170
WT EE +K L E++ W+ I+ + + RT QVAS QKYF++L
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADE-LGNRTAKQVASQVQKYFIKL 62
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 30.8 bits (68), Expect = 0.92, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 122 AWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167
+WT +E L + G G+W+ ++ + + T+T + H KYF
Sbjct: 10 SWTAQEEMALLEAVMDCGFGNWQDVANQ-MCTKTKEECEKHYMKYF 54
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 123 WTEEEHRKFLMGLEKLGKGDWRGI 146
WT+EE K L+G+ K G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 123 WTEEEHRKFLMGLEKLGKGDWRGI 146
WT+EE K L+G+ K G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 111 NHQHQERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF 150
+H K WT EE G++K G+G+W IS+ +
Sbjct: 2 SHMTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 29.6 bits (65), Expect = 1.9, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF 150
K WT EE G++K G+G+W IS+ +
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 32
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 29.3 bits (64), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF 150
K WT EE G++K G+G+W IS+ +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 29.3 bits (64), Expect = 2.3, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF 150
K WT EE G++K G+G+W IS+ +
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 40
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF 150
K WT EE G++K G+G+W IS+ +
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 44
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 122 AWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRT-PTQVASHAQKYFLRLASDLNK 176
+W E+ + FL + + +WR ++ T P Q S ++YF RLA D ++
Sbjct: 21 SWIEQLYEDFLTDPDSV-DANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASR 75
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 122 AWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRT-PTQVASHAQKYFLRLASDLNK 176
+W E+ + FL + + +WR ++ T P Q S ++YF RLA D ++
Sbjct: 21 SWIEQLYEDFLTDPDSV-DANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASR 75
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172
V WT EE + + + G+ DW KF+++ P + Q +LR+ S
Sbjct: 9 VKWTHEEDEQLRALVRQFGQQDW-----KFLASHFPNRTDQQCQYRWLRVLS 55
>pdb|2Y9Z|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase) In Dna
Complex
Length = 374
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 123 WTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167
W + E RKF+ K G+ + I+R+ +T +V ++A+ ++
Sbjct: 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170
>pdb|2Y9Y|A Chain A, Chromatin Remodeling Factor Isw1a(Del_atpase)
Length = 374
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 123 WTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167
W + E RKF+ K G+ + I+R+ +T +V ++A+ ++
Sbjct: 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170
>pdb|2YQK|A Chain A, Solution Structure Of The Sant Domain In Arginine-Glutamic
Acid Dipeptide (Re) Repeats
Length = 63
Score = 27.3 bits (59), Expect = 9.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 123 WTEEEHRKFLMGLEKLGKGDWR 144
WTE+E ++F+ GL + GK +R
Sbjct: 12 WTEDEVKRFVKGLRQYGKNFFR 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,114,143
Number of Sequences: 62578
Number of extensions: 186296
Number of successful extensions: 463
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 31
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)