Query 047042
Match_columns 283
No_of_seqs 227 out of 571
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 07:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.7 9.8E-18 2.1E-22 123.4 5.8 53 118-170 1-57 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.5 1.4E-14 3.1E-19 100.7 4.9 46 121-167 2-48 (48)
3 cd00167 SANT 'SWI3, ADA2, N-Co 99.2 1.9E-11 4.2E-16 79.8 5.2 45 122-167 1-45 (45)
4 smart00717 SANT SANT SWI3, AD 99.2 2.7E-11 5.8E-16 80.0 5.7 46 121-167 2-47 (49)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.0 4.7E-10 1E-14 80.3 4.4 43 123-167 1-43 (60)
6 KOG0457 Histone acetyltransfer 98.9 6.9E-10 1.5E-14 109.0 5.0 53 119-172 71-123 (438)
7 PLN03212 Transcription repress 98.9 1.8E-09 4E-14 99.9 5.2 49 118-167 23-72 (249)
8 PLN03091 hypothetical protein; 98.8 6.5E-09 1.4E-13 102.8 5.0 50 117-167 11-61 (459)
9 KOG0048 Transcription factor, 98.6 4.5E-08 9.8E-13 88.2 4.1 47 120-167 9-56 (238)
10 COG5114 Histone acetyltransfer 98.4 3.1E-07 6.7E-12 88.8 5.3 48 120-168 63-110 (432)
11 PLN03212 Transcription repress 98.3 8.6E-07 1.9E-11 82.4 6.2 51 119-171 77-127 (249)
12 COG5259 RSC8 RSC chromatin rem 98.3 7E-07 1.5E-11 89.2 4.3 44 119-164 278-321 (531)
13 PLN03091 hypothetical protein; 98.2 3.7E-06 8.1E-11 83.6 8.3 51 119-171 66-116 (459)
14 KOG0724 Zuotin and related mol 98.1 1.2E-06 2.6E-11 81.5 2.7 79 113-192 157-240 (335)
15 KOG1279 Chromatin remodeling f 98.0 8.4E-06 1.8E-10 82.2 5.3 46 117-164 250-295 (506)
16 KOG0049 Transcription factor, 97.8 2.4E-05 5.2E-10 81.3 5.9 49 119-168 359-407 (939)
17 KOG0048 Transcription factor, 97.6 0.00012 2.7E-09 66.2 6.3 52 119-172 61-112 (238)
18 KOG0049 Transcription factor, 97.1 0.00049 1.1E-08 71.9 4.0 47 117-164 409-455 (939)
19 KOG4329 DNA-binding protein [G 96.8 0.0022 4.7E-08 63.5 5.4 51 118-172 275-325 (445)
20 KOG0724 Zuotin and related mol 96.7 0.0005 1.1E-08 64.2 0.7 79 121-204 54-132 (335)
21 PLN03162 golden-2 like transcr 96.5 0.0057 1.2E-07 60.9 6.6 58 114-172 231-292 (526)
22 KOG0050 mRNA splicing protein 96.2 0.0036 7.7E-08 64.1 3.4 53 118-171 5-57 (617)
23 COG5147 REB1 Myb superfamily p 95.3 0.0085 1.8E-07 61.1 1.9 57 115-172 15-71 (512)
24 PF13837 Myb_DNA-bind_4: Myb/S 95.1 0.039 8.5E-07 41.5 4.6 46 121-167 2-64 (90)
25 KOG3841 TEF-1 and related tran 94.8 0.06 1.3E-06 53.8 6.1 57 115-172 71-147 (455)
26 KOG4468 Polycomb-group transcr 94.8 0.04 8.7E-07 57.6 5.1 52 120-172 88-148 (782)
27 PF00098 zf-CCHC: Zinc knuckle 94.6 0.026 5.6E-07 33.2 1.9 18 3-20 1-18 (18)
28 KOG0051 RNA polymerase I termi 94.4 0.045 9.8E-07 56.9 4.3 48 119-169 383-430 (607)
29 KOG0051 RNA polymerase I termi 94.3 0.051 1.1E-06 56.5 4.6 53 118-171 434-511 (607)
30 COG5118 BDP1 Transcription ini 94.3 0.065 1.4E-06 53.7 5.1 45 115-161 360-404 (507)
31 PF09111 SLIDE: SLIDE; InterP 94.1 0.095 2.1E-06 44.0 5.0 52 118-170 47-112 (118)
32 PF14392 zf-CCHC_4: Zinc knuck 93.5 0.029 6.3E-07 39.8 0.7 19 1-19 30-48 (49)
33 KOG3554 Histone deacetylase co 93.4 0.063 1.4E-06 55.0 3.2 47 116-163 281-327 (693)
34 KOG4167 Predicted DNA-binding 93.0 0.14 3.1E-06 54.7 5.0 42 120-163 619-660 (907)
35 PLN03142 Probable chromatin-re 92.7 0.16 3.4E-06 55.8 5.2 47 122-169 826-872 (1033)
36 PF15288 zf-CCHC_6: Zinc knuck 92.7 0.058 1.3E-06 38.1 1.2 21 3-23 2-24 (40)
37 smart00426 TEA TEA domain. 91.8 0.17 3.6E-06 39.5 2.9 44 120-164 3-66 (68)
38 PF13873 Myb_DNA-bind_5: Myb/S 91.6 0.79 1.7E-05 34.2 6.3 52 120-171 2-73 (78)
39 PF08914 Myb_DNA-bind_2: Rap1 91.2 0.38 8.1E-06 36.6 4.3 51 120-170 2-60 (65)
40 COG5147 REB1 Myb superfamily p 90.8 0.42 9.1E-06 49.1 5.5 53 118-172 70-122 (512)
41 KOG0050 mRNA splicing protein 88.3 0.46 1E-05 49.2 3.6 47 119-168 58-104 (617)
42 PF01285 TEA: TEA/ATTS domain 88.0 0.54 1.2E-05 47.2 3.8 49 117-166 46-112 (431)
43 PF12776 Myb_DNA-bind_3: Myb/S 86.8 1.5 3.3E-05 33.3 4.9 50 122-172 1-66 (96)
44 KOG4282 Transcription factor G 86.0 1.7 3.8E-05 41.0 5.8 53 120-172 54-118 (345)
45 PLN03142 Probable chromatin-re 85.0 2 4.3E-05 47.5 6.4 54 119-172 925-989 (1033)
46 smart00343 ZnF_C2HC zinc finge 83.5 0.61 1.3E-05 28.8 1.1 17 4-20 1-17 (26)
47 KOG1194 Predicted DNA-binding 83.2 2 4.3E-05 44.2 5.1 42 120-163 187-228 (534)
48 PF06461 DUF1086: Domain of Un 75.4 7.6 0.00016 34.3 5.6 50 122-172 40-91 (145)
49 PRK13923 putative spore coat p 73.2 3.7 8E-05 36.9 3.3 50 120-171 5-60 (170)
50 KOG0384 Chromodomain-helicase 72.2 2.2 4.7E-05 48.2 1.9 53 119-172 1132-1195(1373)
51 TIGR02894 DNA_bind_RsfA transc 71.6 4.4 9.6E-05 36.3 3.4 51 120-172 4-60 (161)
52 PF04504 DUF573: Protein of un 67.2 12 0.00026 30.3 4.7 43 121-164 5-59 (98)
53 PF11035 SnAPC_2_like: Small n 63.5 23 0.0005 35.1 6.7 57 117-174 18-77 (344)
54 COG5082 AIR1 Arginine methyltr 62.0 4.2 9.2E-05 37.2 1.4 18 2-19 97-114 (190)
55 KOG2009 Transcription initiati 56.3 13 0.00028 39.1 3.9 51 116-171 405-455 (584)
56 PF13325 MCRS_N: N-terminal re 55.7 14 0.0003 34.0 3.6 48 118-165 71-124 (199)
57 PF08074 CHDCT2: CHDCT2 (NUC03 55.6 6.5 0.00014 35.6 1.4 29 120-148 3-31 (173)
58 KOG0385 Chromatin remodeling c 54.4 18 0.00039 39.8 4.7 51 120-172 795-845 (971)
59 PF13248 zf-ribbon_3: zinc-rib 52.9 8.8 0.00019 24.0 1.3 20 1-20 1-21 (26)
60 PF14952 zf-tcix: Putative tre 51.4 9.2 0.0002 27.8 1.4 20 3-22 12-32 (44)
61 PF09420 Nop16: Ribosome bioge 46.9 52 0.0011 28.5 5.6 48 118-166 112-162 (164)
62 PHA00442 host recBCD nuclease 45.3 20 0.00043 27.4 2.4 24 125-148 25-48 (59)
63 PF10571 UPF0547: Uncharacteri 44.0 12 0.00025 24.0 0.8 9 2-10 14-22 (26)
64 PF11626 Rap1_C: TRF2-interact 42.0 10 0.00023 29.6 0.5 16 119-134 46-61 (87)
65 PF13404 HTH_AsnC-type: AsnC-t 40.5 73 0.0016 22.0 4.5 38 126-165 3-40 (42)
66 COG5082 AIR1 Arginine methyltr 35.9 19 0.00041 33.1 1.2 18 2-19 60-77 (190)
67 PF01388 ARID: ARID/BRIGHT DNA 34.2 70 0.0015 24.4 4.0 28 141-169 58-90 (92)
68 smart00501 BRIGHT BRIGHT, ARID 33.6 1.2E+02 0.0025 23.5 5.2 31 141-172 54-89 (93)
69 PRK11179 DNA-binding transcrip 32.9 69 0.0015 26.9 4.1 40 125-166 8-47 (153)
70 KOG1194 Predicted DNA-binding 31.7 71 0.0015 33.3 4.6 49 120-170 369-417 (534)
71 PTZ00368 universal minicircle 30.7 32 0.00068 28.8 1.7 20 3-22 78-97 (148)
72 PRK11169 leucine-responsive tr 30.0 84 0.0018 26.8 4.2 40 125-166 13-52 (164)
73 PF08792 A2L_zn_ribbon: A2L zi 29.7 25 0.00053 23.6 0.7 10 3-12 4-13 (33)
74 PTZ00368 universal minicircle 28.2 37 0.0008 28.4 1.7 19 3-21 53-71 (148)
75 PF05634 APO_RNA-bind: APO RNA 28.1 34 0.00073 31.9 1.5 21 3-23 99-124 (204)
76 PF08281 Sigma70_r4_2: Sigma-7 28.1 1.8E+02 0.0039 19.8 4.9 39 126-167 13-51 (54)
77 PF00191 Annexin: Annexin; In 26.8 40 0.00087 23.9 1.4 44 129-174 4-47 (66)
78 PF06397 Desulfoferrod_N: Desu 23.7 30 0.00065 24.0 0.3 8 4-11 8-15 (36)
79 KOG0119 Splicing factor 1/bran 23.7 42 0.0009 35.2 1.4 19 3-21 286-304 (554)
80 PF08437 Glyco_transf_8C: Glyc 23.2 1.3E+02 0.0029 22.2 3.7 34 130-168 6-39 (57)
81 PF13917 zf-CCHC_3: Zinc knuck 23.2 50 0.0011 23.5 1.3 19 2-20 4-22 (42)
82 PF13696 zf-CCHC_2: Zinc knuck 22.7 43 0.00094 22.7 0.9 19 3-21 9-27 (32)
83 smart00344 HTH_ASNC helix_turn 21.6 1.6E+02 0.0035 22.6 4.1 40 125-166 2-41 (108)
84 PF06170 DUF983: Protein of un 21.4 41 0.00088 26.9 0.7 11 1-11 7-17 (86)
85 PLN00111 accumulation of photo 21.0 53 0.0011 33.3 1.5 21 3-23 121-146 (399)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.71 E-value=9.8e-18 Score=123.41 Aligned_cols=53 Identities=47% Similarity=0.725 Sum_probs=47.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCh---hhhhhhccCCC-CHHHHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDW---RGISRKFVSTR-TPTQVASHAQKYFLRL 170 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdW---k~IA~~~V~TR-Tp~QVrSHAQKYF~rl 170 (283)
|.+..||+|||.+||+||+.||.|+| +.|++.++.++ |+.||++|+||||+++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 35679999999999999999999999 99997556688 9999999999999763
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.52 E-value=1.4e-14 Score=100.70 Aligned_cols=46 Identities=37% Similarity=0.641 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccC-CCCHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS-TRTPTQVASHAQKYF 167 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF 167 (283)
++||+||+++|++||++||.++|+.||+ +|+ +||..||++||++|.
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~-~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAK-RMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHH-HHSSSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHH-HcCCCCCHHHHHHHHHhhC
Confidence 5899999999999999999977999995 888 999999999999883
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.22 E-value=1.9e-11 Score=79.82 Aligned_cols=45 Identities=33% Similarity=0.642 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 122 AWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 122 ~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
.||+||+.+|+.++++||.++|..||+ ++++||..||+.||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~-~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK-ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh-HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999779999995 899999999999987763
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.22 E-value=2.7e-11 Score=79.97 Aligned_cols=46 Identities=28% Similarity=0.498 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
..||+||+.+|+.++++||.++|..||+ ++++||+.||+.+|.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~-~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAK-ELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 5899999999999999999669999995 899999999999987764
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.99 E-value=4.7e-10 Score=80.27 Aligned_cols=43 Identities=33% Similarity=0.641 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 123 WTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 123 WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
||+||+++|++++++||. +|..||+ ++++||+.||+.||.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~-~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE-HLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH-HSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH-HHCcCCHHHHHHHHHHHC
Confidence 999999999999999996 9999995 888899999999887744
No 6
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.94 E-value=6.9e-10 Score=109.02 Aligned_cols=53 Identities=26% Similarity=0.487 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
-...||.+|+.+||+|++.||-|||..|| ++|+|||..+|+.|+.|+|++..-
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s~~ 123 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNSPI 123 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcCcc
Confidence 35689999999999999999999999999 599999999999999999987543
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.88 E-value=1.8e-09 Score=99.92 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc-CCCCHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFV-STRTPTQVASHAQKYF 167 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V-~TRTp~QVrSHAQKYF 167 (283)
-+.++||+||+++++++|++||..+|+.||+ .+ .+||++|||.||.+|+
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhh
Confidence 3467999999999999999999999999996 66 5899999999999987
No 8
>PLN03091 hypothetical protein; Provisional
Probab=98.77 E-value=6.5e-09 Score=102.78 Aligned_cols=50 Identities=22% Similarity=0.454 Sum_probs=44.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC-CCCHHHHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS-TRTPTQVASHAQKYF 167 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF 167 (283)
+.+.++||.|||++|+++|++||.++|+.||+ .++ +||++|||.||.+|+
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhcc
Confidence 44567899999999999999999999999996 665 899999999998875
No 9
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.57 E-value=4.5e-08 Score=88.24 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC-CCCHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS-TRTPTQVASHAQKYF 167 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF 167 (283)
.++||.|||+++++.|++||.|+|..|++ ..+ .|+.+|||.+|-+|+
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyL 56 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYL 56 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhccc
Confidence 58999999999999999999999999996 788 899999999999985
No 10
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.40 E-value=3.1e-07 Score=88.78 Aligned_cols=48 Identities=25% Similarity=0.599 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFL 168 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 168 (283)
...|+.+|+.+|+++++..|-|+|..|| .|||.|+...|++|+.||++
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHh
Confidence 5689999999999999999999999999 59999999999999999987
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.33 E-value=8.6e-07 Score=82.43 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
+.++||+||++++|+.++.||. .|..||+ +++.||..||+.||..++.+..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk-~LpGRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAG-RIPGRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHh-hcCCCCHHHHHHHHHHHHhHHH
Confidence 4679999999999999999997 8999995 9999999999999987665543
No 12
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=98.26 E-value=7e-07 Score=89.25 Aligned_cols=44 Identities=32% Similarity=0.589 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQ 164 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQ 164 (283)
....||.+|..+||+||++||. +|.+||+ +|+|||+.||-.|+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL 321 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL 321 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence 3459999999999999999999 9999996 999999999998653
No 13
>PLN03091 hypothetical protein; Provisional
Probab=98.22 E-value=3.7e-06 Score=83.60 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
+.++||+||++++|+.+++||. .|..||+ +++.||..||+.||...+.|..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk-~LPGRTDnqIKNRWnslLKKkl 116 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAA-QLPGRTDNEIKNLWNSCLKKKL 116 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence 4679999999999999999998 8999995 9999999999999987665543
No 14
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-06 Score=81.52 Aligned_cols=79 Identities=43% Similarity=0.563 Sum_probs=72.3
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHH-----HHHHHHhhhhccccCCCCccccc
Q 047042 113 QHQERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQ-----KYFLRLASDLNKKKRRSSLFDMI 187 (283)
Q Consensus 113 ~~~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQ-----KYF~rl~~~~~k~krR~Sl~Di~ 187 (283)
...+++++..|++.+|.+|+.++.+||+++|..|.++++.+|++.|+.+|+| +|+.+... ....++|.+++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ 235 (335)
T KOG0724|consen 157 AEELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKS-GEEEKRRKSIEDIT 235 (335)
T ss_pred hhhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhh-hccccccchhhhhh
Confidence 3567788999999999999999999999999999999999999999999999 99999988 78889999999998
Q ss_pred CCCCC
Q 047042 188 GIRSS 192 (283)
Q Consensus 188 ~~~~~ 192 (283)
.....
T Consensus 236 ~~~~~ 240 (335)
T KOG0724|consen 236 TASEA 240 (335)
T ss_pred ccchh
Confidence 76543
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.98 E-value=8.4e-06 Score=82.16 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=41.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQ 164 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQ 164 (283)
-..+..||++|.-++|+||++||. +|.+|| .+|+|||..||-.|..
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kFL 295 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKFL 295 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHHH
Confidence 345679999999999999999999 999999 5999999999999643
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.84 E-value=2.4e-05 Score=81.35 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFL 168 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 168 (283)
+.++||.+||.+++.||.+||..+|-.|- ..|++|+..|||.+|.+.+.
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL~ 407 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVLN 407 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHHH
Confidence 57899999999999999999999999998 59999999999996655443
No 17
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.61 E-value=0.00012 Score=66.16 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+++.||+||+++.+++-.+||- .|..||+ +++.||.-.|+.||.-.+.|...
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999998 7999995 99999999999999666544443
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.07 E-value=0.00049 Score=71.94 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=41.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQ 164 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQ 164 (283)
+-|.+.||-.||+++|.+|++||+|+|.+||. |++.||.+|.+.+-.
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~-~Lp~~t~~q~~rrR~ 455 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAM-LLPKKTSRQLRRRRL 455 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHH-HccccchhHHHHHHH
Confidence 35688999999999999999999999999994 999999977766543
No 19
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=96.75 E-value=0.0022 Score=63.49 Aligned_cols=51 Identities=37% Similarity=0.535 Sum_probs=43.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
---..|+++|-+.|-+||+.||| |+-.|-++-|+||+...|-.+ ||++.+.
T Consensus 275 d~l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVey---YYlWKkS 325 (445)
T KOG4329|consen 275 DDLSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVEY---YYLWKKS 325 (445)
T ss_pred cccccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHHH---HHHhhcC
Confidence 34568999999999999999999 999999899999999999874 5555544
No 20
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0005 Score=64.18 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhhhhccccCCCCcccccCCCCCCccccCCC
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLASDLNKKKRRSSLFDMIGIRSSMAAVHHRQ 200 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~~~~k~krR~Sl~Di~~~~~~~~~~~~~p 200 (283)
..||++||..|.++|..| .-.|..|- .|++.++..|.+.|+|+||..+... . .-..-+.-+.++.++.++.|+||
T Consensus 54 ~~~t~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~v~~~~~~~~~~p~~~~~-~--~~~~~~~~~~~~~~~~k~~~~y~ 128 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLE-KRLEDKIE-EYIGLVFDVNIRESGQKPFPKYGKS-D--TSLAEVEEFYNFWPKFKSWRQYP 128 (335)
T ss_pred cccchhhhhHHHhcCccc-cccchhHH-hhhhhHHHHhhhhccCCCccccCcc-c--cccccccccCCccccccccccCC
Confidence 359999999999999999 45999998 5999999999999999999888761 1 11112223677889999999999
Q ss_pred CCCC
Q 047042 201 VNSS 204 (283)
Q Consensus 201 ~~~~ 204 (283)
.+..
T Consensus 129 ~~~~ 132 (335)
T KOG0724|consen 129 QKDE 132 (335)
T ss_pred CCCC
Confidence 9764
No 21
>PLN03162 golden-2 like transcription factor; Provisional
Probab=96.52 E-value=0.0057 Score=60.90 Aligned_cols=58 Identities=34% Similarity=0.440 Sum_probs=45.2
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhc--cCCCCHHHHHHHHHHHHHHHhh
Q 047042 114 HQERKKGVAWTEEEHRKFLMGLEKLGK--GDWRGISRKF--VSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 114 ~~~rkk~~~WTeEEh~lFLeGLekyGk--GdWk~IA~~~--V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
...+|.+..||.|=|++|++||++.|. --=|.|-+ + |..=|..+|++|-|||...+..
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILe-lMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILE-LMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHH-HcCCCCcCHHHHHHHHHHHHHhccc
Confidence 345677899999999999999999993 12234432 3 4567899999999999888764
No 22
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.0036 Score=64.11 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=47.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
.+++-|+.-||+.+-.++.+||+..|..|++ .+.-+|++||..+|.+|..-..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~s-ll~~kt~rqC~~rw~e~ldp~i 57 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIAS-LLNRKTARQCKARWEEWLDPAI 57 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHH-HHhhcchhHHHHHHHHHhCHHH
Confidence 4688999999999999999999999999995 8888999999999988865443
No 23
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.33 E-value=0.0085 Score=61.06 Aligned_cols=57 Identities=19% Similarity=0.360 Sum_probs=48.2
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+...+.+.|+..||+.++.++++||..+|..||..| ..||+.||+.||..|...+.+
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~-~~~~~kq~~~rw~~~lnp~lk 71 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLL-ISSTGKQSSNRWNNHLNPQLK 71 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHh-cccccccccchhhhhhchhcc
Confidence 445567799999999999999999999999999755 459999999999777665544
No 24
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.13 E-value=0.039 Score=41.54 Aligned_cols=46 Identities=22% Similarity=0.449 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHH------hC-----CC--ChhhhhhhccC----CCCHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEK------LG-----KG--DWRGISRKFVS----TRTPTQVASHAQKYF 167 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLek------yG-----kG--dWk~IA~~~V~----TRTp~QVrSHAQKYF 167 (283)
..||++|-..||+.+.. ++ ++ -|+.||. .+. .||+.||+..+..-.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHH
Confidence 47999999999999887 32 11 5999996 433 699999999885533
No 25
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=94.83 E-value=0.06 Score=53.75 Aligned_cols=57 Identities=28% Similarity=0.355 Sum_probs=44.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhC---------------CCChhhhhhhccC-----CCCHHHHHHHHHHHHHHHhh
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLG---------------KGDWRGISRKFVS-----TRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyG---------------kGdWk~IA~~~V~-----TRTp~QVrSHAQKYF~rl~~ 172 (283)
..|-..+.|+++=|+.|+|||..|- .|+=..||+ ||+ |||.+||-+|-|=.=.+..+
T Consensus 71 ~~~daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~r 147 (455)
T KOG3841|consen 71 NQRDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLR 147 (455)
T ss_pred cccccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3345688999999999999999653 245688996 876 89999999999865444444
No 26
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=94.83 E-value=0.04 Score=57.62 Aligned_cols=52 Identities=27% Similarity=0.475 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhh---------hhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGI---------SRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~I---------A~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
...||-.|++-|..||+.+|+ |+..| +..-+..||..|||.||-+-..+..+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k 148 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNK 148 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHh
Confidence 679999999999999999998 99999 11236678999999987665555444
No 27
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=94.59 E-value=0.026 Score=33.23 Aligned_cols=18 Identities=50% Similarity=1.138 Sum_probs=16.6
Q ss_pred cccCCCCCCCCCCccCCC
Q 047042 3 RKCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~ 20 (283)
|+|-.||..||-++-|+.
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 689999999999999984
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.40 E-value=0.045 Score=56.90 Aligned_cols=48 Identities=25% Similarity=0.462 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLR 169 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r 169 (283)
+.+.||+||++.+...+.+.|. +|..|++ .+ .|.|.-||.+|..|..-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-~l-gr~P~~crd~wr~~~~~ 430 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-AL-GRMPMDCRDRWRQYVKC 430 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-HH-ccCcHHHHHHHHHhhcc
Confidence 6789999999999999999996 9999995 66 59999999999888543
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.34 E-value=0.051 Score=56.53 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=43.0
Q ss_pred cCCCCCCHHHHHHHHHHHH-------Hh-------CC-----------CChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 118 KKGVAWTEEEHRKFLMGLE-------KL-------GK-----------GDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLe-------ky-------Gk-----------GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
.+.++||.||++++|..|+ .| |. =+|-.|++ .++||+..|||.+|++-..+-.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse-~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE-MLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH-hhcCCCcchHHHHHHHHHhhHH
Confidence 4678999999999999996 34 11 17999995 9999999999998887655443
No 30
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=94.33 E-value=0.065 Score=53.69 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=41.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHH
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVAS 161 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrS 161 (283)
..++...+||.+|-++|-.||.++|- ++..|+ ++.++|..+||..
T Consensus 360 g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKa 404 (507)
T COG5118 360 GKKKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKA 404 (507)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHH
Confidence 35677889999999999999999998 999999 5999999999987
No 31
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.14 E-value=0.095 Score=43.98 Aligned_cols=52 Identities=33% Similarity=0.593 Sum_probs=40.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hccCCCCHHHHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGK---GDWRGISR-----------KFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGk---GdWk~IA~-----------~~V~TRTp~QVrSHAQKYF~rl 170 (283)
.++..||+|||+-+|-.+.+||. |.|..|-. -|+.+||+..+.-|+. +++++
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~-tLi~~ 112 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN-TLIKL 112 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH-HHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH-HHHHH
Confidence 35779999999999999999999 99999954 3577999999999885 44443
No 32
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=93.47 E-value=0.029 Score=39.79 Aligned_cols=19 Identities=47% Similarity=1.190 Sum_probs=17.0
Q ss_pred CCcccCCCCCCCCCCccCC
Q 047042 1 MGRKCSHCGNIGHNSRTCT 19 (283)
Q Consensus 1 m~RkCShCgn~GHNSRTC~ 19 (283)
+.+.|.+||..||..+.|+
T Consensus 30 lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 30 LPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred cChhhcCCCCcCcCHhHcC
Confidence 3578999999999999997
No 33
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=93.42 E-value=0.063 Score=55.04 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=41.3
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
=|-.-.-|+.-|-.+|-++|++||+ |+..|-.+|++=++.+-+-.++
T Consensus 281 CRDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 281 CRDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYY 327 (693)
T ss_pred ehhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHH
Confidence 3556789999999999999999998 9999998999999888777644
No 34
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=92.97 E-value=0.14 Score=54.67 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
...||..|..+|-.||-.|-+ |+..|++ .|++||..||-.+|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~k-m~~~KtVaqCVeyY 660 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQK-MVKSKTVAQCVEYY 660 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHHH-HhccccHHHHHHHH
Confidence 568999999999999999998 9999995 99999999998854
No 35
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.73 E-value=0.16 Score=55.79 Aligned_cols=47 Identities=23% Similarity=0.504 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHH
Q 047042 122 AWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLR 169 (283)
Q Consensus 122 ~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~r 169 (283)
.||..+=..|+.|.++||+.+...||. .|.+||+.+|+.+++-|+.|
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~-~~~~k~~~ev~~y~~~f~~~ 872 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIAS-EMEGKTEEEVERYAKVFWER 872 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHH-HhcCCCHHHHHHHHHHHHHh
Confidence 599999999999999999999999995 89999999999988776644
No 36
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=92.68 E-value=0.058 Score=38.13 Aligned_cols=21 Identities=33% Similarity=0.748 Sum_probs=18.3
Q ss_pred cccCCCCCCCCCC--ccCCCCCC
Q 047042 3 RKCSHCGNIGHNS--RTCTSHKA 23 (283)
Q Consensus 3 RkCShCgn~GHNS--RTC~~~~~ 23 (283)
+||..||.+||.. ++||-...
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~~ 24 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYCW 24 (40)
T ss_pred ccccccccccccccCccCCCCCC
Confidence 7999999999976 89998754
No 37
>smart00426 TEA TEA domain.
Probab=91.79 E-value=0.17 Score=39.46 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCh---------------hhhhhhccC-----CCCHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDW---------------RGISRKFVS-----TRTPTQVASHAQ 164 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdW---------------k~IA~~~V~-----TRTp~QVrSHAQ 164 (283)
...|.++=|..|++||+.|-.-.+ +-|+ +|+- .||.+||-||-|
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs-~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHH-HHHHHHhCCccchhhhcchhe
Confidence 457999999999999998764222 2344 2432 589999999876
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=91.59 E-value=0.79 Score=34.20 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHh-----CC-----------CChhhhhhhc----cCCCCHHHHHHHHHHHHHHHh
Q 047042 120 GVAWTEEEHRKFLMGLEKL-----GK-----------GDWRGISRKF----VSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLeky-----Gk-----------GdWk~IA~~~----V~TRTp~QVrSHAQKYF~rl~ 171 (283)
...||.+|.+.|++.|++| |+ .-|..|+..| .+.||..|++..|.++-....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3579999999999999986 31 3799998643 236999999998877655444
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=91.24 E-value=0.38 Score=36.61 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--------CChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGK--------GDWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGk--------GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
..++|+|||+.++.-|..+.. .-|+.+++.++...|-.--|.||.|.+...
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 358999999999999965532 269999987665788888888777665443
No 40
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.79 E-value=0.42 Score=49.08 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=45.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
.+...|++||++.++..-..+|. .|..|| .+|+.||..||..+|.+-+.....
T Consensus 70 lk~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 70 LKKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhhhhhc
Confidence 35679999999999999999998 799999 599999999999877766655554
No 41
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.34 E-value=0.46 Score=49.24 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFL 168 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 168 (283)
+..-|+.||++++|.+.+.+-. .|.-|+. .| .||..||-.|+++-+-
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-i~-gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-IM-GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-Hh-hhhHHHHHHHHHHHHH
Confidence 4678999999999999999998 9999994 55 5999999999877543
No 42
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=87.96 E-value=0.54 Score=47.16 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=32.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCC-------------CChhhhhhhccC-----CCCHHHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGK-------------GDWRGISRKFVS-----TRTPTQVASHAQKY 166 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGk-------------GdWk~IA~~~V~-----TRTp~QVrSHAQKY 166 (283)
......|+++=|..|++||+.|-. |+=+-|++ ||. +||.+||.+|.|-.
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~-yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISD-YIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHH-HHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHH-HHHHHhCcccchhHHHHHHHHH
Confidence 456789999999999999997653 33456674 654 69999999999966
No 43
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=86.82 E-value=1.5 Score=33.34 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHh-------CCC-----Chhhhhhhcc----CCCCHHHHHHHHHHHHHHHhh
Q 047042 122 AWTEEEHRKFLMGLEKL-------GKG-----DWRGISRKFV----STRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 122 ~WTeEEh~lFLeGLeky-------GkG-----dWk~IA~~~V----~TRTp~QVrSHAQKYF~rl~~ 172 (283)
.||+++++.||+.+... +.+ .|..|++.|- ...|..||..|+. .+.+.-.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~-~lk~~y~ 66 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK-TLKKDYR 66 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH-HHHHHHH
Confidence 59999999999998643 222 5888876442 2468899999974 4444444
No 44
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=85.97 E-value=1.7 Score=41.05 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHH----hCCC-----Chhhhhhhcc---CCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEK----LGKG-----DWRGISRKFV---STRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLek----yGkG-----dWk~IA~~~V---~TRTp~QVrSHAQKYF~rl~~ 172 (283)
...|+.+|=..||++... |..+ .|..||+.+- --||+.||+..+-+...+..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~ 118 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK 118 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999998874 3344 5999997332 259999999998776555555
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=84.97 E-value=2 Score=47.53 Aligned_cols=54 Identities=31% Similarity=0.540 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhh-----------hccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISR-----------KFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~-----------~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
++..||+|||+.+|-.+.+||.|+|..|-. -|+.+||+..+.-++.--+.-+.+
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~~ 989 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIEK 989 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999932 357799999999988654444433
No 46
>smart00343 ZnF_C2HC zinc finger.
Probab=83.53 E-value=0.61 Score=28.80 Aligned_cols=17 Identities=47% Similarity=1.126 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCccCCC
Q 047042 4 KCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 4 kCShCgn~GHNSRTC~~ 20 (283)
+|..||..||.++.|+.
T Consensus 1 ~C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 1 KCYNCGKEGHIARDCPK 17 (26)
T ss_pred CCccCCCCCcchhhCCc
Confidence 59999999999999984
No 47
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=83.16 E-value=2 Score=44.16 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
.-.||.||--+|-.+++.||+ ++.+|- ..++-|+..-++-+|
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK-~F~kIr-q~LP~rsLaSlvqyY 228 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGK-DFHKIR-QALPHRSLASLVQYY 228 (534)
T ss_pred cccchHHHHHHHHHHHHHhcc-cHHHHH-HHccCccHHHHHHHH
Confidence 457999999999999999999 999998 489999987777654
No 48
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=75.38 E-value=7.6 Score=34.28 Aligned_cols=50 Identities=14% Similarity=0.414 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCCC--ChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 122 AWTEEEHRKFLMGLEKLGKG--DWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 122 ~WTeEEh~lFLeGLekyGkG--dWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
-++..+...||.+|.+||-| +|+++-. -+..+|..+++.++-=|+.++.-
T Consensus 40 GFn~rQR~~Fln~vMR~G~~~f~~~w~~~-~Lr~Ks~~ei~aY~~LFm~HL~E 91 (145)
T PF06461_consen 40 GFNPRQRKAFLNAVMRYGMGAFDWKWFVP-RLRGKSEKEIRAYGSLFMRHLCE 91 (145)
T ss_pred ccCHHHHHHHHHHHHHHCcCcccchHHhh-hhccccHHHHHHHHHHHHHHhcC
Confidence 56788899999999999988 8999885 78889999999999766666654
No 49
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=73.20 E-value=3.7 Score=36.92 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC------ChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKG------DWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkG------dWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
...||+||+.++-+.|-.|++- .+..++. . -.||..+|..+|..|..++.
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~afe~~g~-~-L~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGD-A-LKRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHH-H-HhhhHHHHHhHHHHHHHHHH
Confidence 4589999999998888888864 3334442 2 26999999999976665443
No 50
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=72.17 E-value=2.2 Score=48.23 Aligned_cols=53 Identities=25% Similarity=0.489 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhh-------hccC----CCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISR-------KFVS----TRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~-------~~V~----TRTp~QVrSHAQKYF~rl~~ 172 (283)
...-|..||+..||.||-+||.|+|..|-- .-|. --...|.+.++ .|+..+..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~-~yLls~~~ 1195 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRA-DYLLSLLR 1195 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHH-HHHHHHHh
Confidence 577899999999999999999999999931 0011 13346666666 68877776
No 51
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.62 E-value=4.4 Score=36.25 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-C-----ChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGK-G-----DWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGk-G-----dWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
.-.||+|||.++-+.|-+|=+ | .+..|++ -+ +||+.-|..+|..|..+...
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~-~L-~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR-AL-NRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HH-cccHHHhcchHHHHHHHHHH
Confidence 458999999999999887643 2 5677775 33 79999999999999887765
No 52
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=67.15 E-value=12 Score=30.28 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHh----CCC---ChhhhhhhccCCC-----CHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKL----GKG---DWRGISRKFVSTR-----TPTQVASHAQ 164 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLeky----GkG---dWk~IA~~~V~TR-----Tp~QVrSHAQ 164 (283)
..||+|+|..+|+||-.| |.. +|..+- ++|... |..|+..-..
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~Kir 59 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYDKIR 59 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHHHHH
Confidence 469999999999999988 643 666665 355432 5677766443
No 53
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=63.48 E-value=23 Score=35.10 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhccCCCCHHHHHHHHHHHHHHHhhhh
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKG---DWRGISRKFVSTRTPTQVASHAQKYFLRLASDL 174 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkG---dWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~~~ 174 (283)
......||..|.+.+|.+|+--... |-..|++ .+.+|+..||+..-|+.-.|..+++
T Consensus 18 ~~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~-~l~~Rs~aEI~~fl~~LK~rvarea 77 (344)
T PF11035_consen 18 VTGPAAWSAREKRQLLRLLQARRGQPEPDAAELAK-ELPGRSEAEIRDFLQQLKGRVAREA 77 (344)
T ss_pred CCCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHh-hccCcCHHHHHHHHHHHHHHHHHHH
Confidence 3446799999999999999965322 4456674 7899999999987776655555543
No 54
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=62.01 E-value=4.2 Score=37.19 Aligned_cols=18 Identities=50% Similarity=1.147 Sum_probs=16.0
Q ss_pred CcccCCCCCCCCCCccCC
Q 047042 2 GRKCSHCGNIGHNSRTCT 19 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~ 19 (283)
.-+|.+||-+||=+|-|+
T Consensus 97 ~~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 97 PKKCYNCGETGHLSRDCN 114 (190)
T ss_pred ccccccccccCccccccC
Confidence 358999999999999994
No 55
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=56.32 E-value=13 Score=39.13 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=43.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
.+.....||.+|=++|-.++..+|- +..-|+ +..+.|+..||+. ||-++-.
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs-~~slis-~l~p~R~rk~iK~---K~~~eE~ 455 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGS-DFSLIS-NLFPLRDRKQIKA---KFKKEEK 455 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhcc-cccccc-cccccccHHHHHH---HHhhhhh
Confidence 3456789999999999999999998 999999 5899999999987 6654433
No 56
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=55.66 E-value=14 Score=33.97 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=36.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC--CCChhhhh----hhccCCCCHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLG--KGDWRGIS----RKFVSTRTPTQVASHAQK 165 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyG--kGdWk~IA----~~~V~TRTp~QVrSHAQK 165 (283)
....+||.+|+++|........ -..|..|= ..|-.+||+++...||+-
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~l 124 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRL 124 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHH
Confidence 3567999999999998765543 23566662 146779999999999983
No 57
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.59 E-value=6.5 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.561 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISR 148 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~ 148 (283)
...|-.+-|-.||.||-++|.|.|..|..
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~n 31 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQN 31 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhc
Confidence 45799999999999999999999999963
No 58
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=54.42 E-value=18 Score=39.83 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
-..||+.+=..|+.|.++||+++-..||+ -|-. |+..|..++.-||-++..
T Consensus 795 ft~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~e 845 (971)
T KOG0385|consen 795 FTNWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLEE 845 (971)
T ss_pred ccchhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999996 5554 999999999877777654
No 59
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=52.91 E-value=8.8 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.700 Sum_probs=14.8
Q ss_pred CCcccCCCCCC-CCCCccCCC
Q 047042 1 MGRKCSHCGNI-GHNSRTCTS 20 (283)
Q Consensus 1 m~RkCShCgn~-GHNSRTC~~ 20 (283)
|.+.|.+||.. --..+-|+.
T Consensus 1 m~~~Cp~Cg~~~~~~~~fC~~ 21 (26)
T PF13248_consen 1 MEMFCPNCGAEIDPDAKFCPN 21 (26)
T ss_pred CcCCCcccCCcCCcccccChh
Confidence 88999999984 344566665
No 60
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=51.41 E-value=9.2 Score=27.78 Aligned_cols=20 Identities=35% Similarity=0.896 Sum_probs=15.8
Q ss_pred cccCCCC-CCCCCCccCCCCC
Q 047042 3 RKCSHCG-NIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCg-n~GHNSRTC~~~~ 22 (283)
|||.+|| .||+-+--|.+..
T Consensus 12 rkCp~CGt~NG~R~~~CKN~~ 32 (44)
T PF14952_consen 12 RKCPKCGTYNGTRGLSCKNKS 32 (44)
T ss_pred ccCCcCcCccCcccccccCCc
Confidence 8999999 4788777787753
No 61
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=46.92 E-value=52 Score=28.48 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=37.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc-C--CCCHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFV-S--TRTPTQVASHAQKY 166 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V-~--TRTp~QVrSHAQKY 166 (283)
+...+=|+.|..-....|++||. |++.++++-= . =.|+.|++-...+|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 56677888888888889999997 9999997321 1 27999999877666
No 62
>PHA00442 host recBCD nuclease inhibitor
Probab=45.31 E-value=20 Score=27.37 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhh
Q 047042 125 EEEHRKFLMGLEKLGKGDWRGISR 148 (283)
Q Consensus 125 eEEh~lFLeGLekyGkGdWk~IA~ 148 (283)
-|-+..||++|+-.|.-+|..+..
T Consensus 25 Lek~~~~L~~Lea~GVDNW~Gy~e 48 (59)
T PHA00442 25 LEKDNEFLKALRACGVDNWDGYMD 48 (59)
T ss_pred HHHhhHHHHHHHHcCCcchhhHHH
Confidence 366778999999999999999973
No 63
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.97 E-value=12 Score=24.04 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.6
Q ss_pred CcccCCCCC
Q 047042 2 GRKCSHCGN 10 (283)
Q Consensus 2 ~RkCShCgn 10 (283)
++.|.|||+
T Consensus 14 ~~~Cp~CG~ 22 (26)
T PF10571_consen 14 AKFCPHCGY 22 (26)
T ss_pred cCcCCCCCC
Confidence 578999986
No 64
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=41.96 E-value=10 Score=29.61 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMG 134 (283)
Q Consensus 119 k~~~WTeEEh~lFLeG 134 (283)
..+.||+|+|+.++.+
T Consensus 46 ~~GiWT~eDD~~L~~~ 61 (87)
T PF11626_consen 46 MPGIWTPEDDEMLRSG 61 (87)
T ss_dssp -TT---HHHHHHHTS-
T ss_pred CCCCcCHHHHHHHHcC
Confidence 4678999999998543
No 65
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=40.48 E-value=73 Score=22.00 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHH
Q 047042 126 EEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQK 165 (283)
Q Consensus 126 EEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQK 165 (283)
+=+.++|..|+.-|+-.|..||+ .++ =++..|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~-~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAE-ELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHH-HHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHH-HHC-cCHHHHHHHHHH
Confidence 55789999999999999999996 565 577777776654
No 66
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=35.93 E-value=19 Score=33.09 Aligned_cols=18 Identities=39% Similarity=0.914 Sum_probs=16.6
Q ss_pred CcccCCCCCCCCCCccCC
Q 047042 2 GRKCSHCGNIGHNSRTCT 19 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~ 19 (283)
.++|--||++||=.|-||
T Consensus 60 ~~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 60 NPVCFNCGQNGHLRRDCP 77 (190)
T ss_pred ccccchhcccCcccccCC
Confidence 368999999999999999
No 67
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=34.23 E-value=70 Score=24.40 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=20.2
Q ss_pred CChhhhhhhccCC---CC--HHHHHHHHHHHHHH
Q 047042 141 GDWRGISRKFVST---RT--PTQVASHAQKYFLR 169 (283)
Q Consensus 141 GdWk~IA~~~V~T---RT--p~QVrSHAQKYF~r 169 (283)
+.|..|++ .++- .+ ..+++.++.+|+..
T Consensus 58 ~~W~~va~-~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVAR-KLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHH-HTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHH-HhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 58999997 4442 22 37899999998754
No 68
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=33.55 E-value=1.2e+02 Score=23.52 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=22.4
Q ss_pred CChhhhhhhccCC-----CCHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVST-----RTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~T-----RTp~QVrSHAQKYF~rl~~ 172 (283)
..|..|++ .++- ....+++.++++|+.....
T Consensus 54 ~~W~~Va~-~lg~~~~~~~~~~~lk~~Y~k~L~~yE~ 89 (93)
T smart00501 54 KKWKEIAR-ELGIPDTSTSAASSLRKHYERYLLPFER 89 (93)
T ss_pred CCHHHHHH-HhCCCcccchHHHHHHHHHHHHhHHHHH
Confidence 58999997 4442 3468889999998766544
No 69
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=32.86 E-value=69 Score=26.93 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 125 EEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 125 eEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
++-|.++|..|++-|+-.|..||+ -++ -++..|+.+.++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~-~lg-lS~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAK-QFG-VSPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH-HHC-cCHHHHHHHHHHH
Confidence 467999999999999999999996 554 6778888766553
No 70
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=31.66 E-value=71 Score=33.32 Aligned_cols=49 Identities=4% Similarity=-0.094 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
...||.+|..+.+.+|++||+ +...|+ ..|+.++-.|+..-...|-.|+
T Consensus 369 n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~ 417 (534)
T KOG1194|consen 369 NRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQ 417 (534)
T ss_pred ccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHH
Confidence 479999999999999999999 788888 4789899999987666664444
No 71
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=30.73 E-value=32 Score=28.82 Aligned_cols=20 Identities=45% Similarity=1.051 Sum_probs=15.4
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
+.|..||..||.++.|+...
T Consensus 78 ~~C~~Cg~~GH~~~~C~~~~ 97 (148)
T PTZ00368 78 RSCYNCGQTGHISRECPNRA 97 (148)
T ss_pred cccCcCCCCCcccccCCCcc
Confidence 46888888888888888743
No 72
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=29.96 E-value=84 Score=26.79 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 125 EEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 125 eEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
++-|.+.|..|++-|+-.|..||+ -++ =++.-|+.+.++-
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~-~lg-lS~~tv~~Ri~rL 52 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSK-RVG-LSPTPCLERVRRL 52 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHH-HHC-cCHHHHHHHHHHH
Confidence 677999999999999999999996 554 6677777766543
No 73
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=29.71 E-value=25 Score=23.62 Aligned_cols=10 Identities=60% Similarity=1.414 Sum_probs=8.2
Q ss_pred cccCCCCCCC
Q 047042 3 RKCSHCGNIG 12 (283)
Q Consensus 3 RkCShCgn~G 12 (283)
++|+.||++|
T Consensus 4 ~~C~~C~~~~ 13 (33)
T PF08792_consen 4 KKCSKCGGNG 13 (33)
T ss_pred eEcCCCCCCe
Confidence 6899998776
No 74
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=28.24 E-value=37 Score=28.43 Aligned_cols=19 Identities=47% Similarity=1.074 Sum_probs=13.7
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
+.|..|+..||-++.||..
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~ 71 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEA 71 (148)
T ss_pred cccCCCCCcCcCcccCCCc
Confidence 4577777777777777764
No 75
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=28.14 E-value=34 Score=31.85 Aligned_cols=21 Identities=43% Similarity=1.018 Sum_probs=17.2
Q ss_pred cccCCC-----CCCCCCCccCCCCCC
Q 047042 3 RKCSHC-----GNIGHNSRTCTSHKA 23 (283)
Q Consensus 3 RkCShC-----gn~GHNSRTC~~~~~ 23 (283)
..|.+| |.-||.-|||...+.
T Consensus 99 ~~C~~C~EVHVG~~GH~irtC~g~k~ 124 (204)
T PF05634_consen 99 KACGYCPEVHVGPVGHKIRTCGGFKH 124 (204)
T ss_pred eecCCCCCeEECCCcccccccCCCCc
Confidence 469988 678999999988653
No 76
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=28.13 E-value=1.8e+02 Score=19.81 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 126 EEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 126 EEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
++++..+...-..|. .|+.||+ .+ ..|+..|+.+.++=.
T Consensus 13 ~~~r~i~~l~~~~g~-s~~eIa~-~l-~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 13 ERQREIFLLRYFQGM-SYAEIAE-IL-GISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHH-HC-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CHHHHHH-HH-CcCHHHHHHHHHHHH
Confidence 344444444555666 9999996 54 488888887665433
No 77
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=26.76 E-value=40 Score=23.93 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhhhh
Q 047042 129 RKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLASDL 174 (283)
Q Consensus 129 ~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~~~ 174 (283)
+++-.|++..|...+.-|. .+.+|++.|.+.=.+.|...-..++
T Consensus 4 ~~l~~a~~~~g~de~~li~--Il~~rs~~ql~~i~~~Y~~~~g~~L 47 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIE--ILCTRSPAQLRAIKQAYKKKYGKDL 47 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHH--HHHHSTHHHHHHHHHHHHHHHSS-H
T ss_pred HHHHHHccCCCCChhHhhh--HHhhhcccccceeehhhhhhhHHHH
Confidence 3777888888875666664 6779999999998888876655543
No 78
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=23.74 E-value=30 Score=23.96 Aligned_cols=8 Identities=88% Similarity=1.946 Sum_probs=3.9
Q ss_pred ccCCCCCC
Q 047042 4 KCSHCGNI 11 (283)
Q Consensus 4 kCShCgn~ 11 (283)
||.+|||.
T Consensus 8 kC~~CGni 15 (36)
T PF06397_consen 8 KCEHCGNI 15 (36)
T ss_dssp E-TTT--E
T ss_pred EccCCCCE
Confidence 79999863
No 79
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=23.71 E-value=42 Score=35.21 Aligned_cols=19 Identities=37% Similarity=0.866 Sum_probs=17.0
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
+.|-+||-.||+++-|...
T Consensus 286 n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 286 NVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccccccCCcccccccCCCc
Confidence 4899999999999999886
No 80
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=23.24 E-value=1.3e+02 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.433 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHH
Q 047042 130 KFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFL 168 (283)
Q Consensus 130 lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 168 (283)
-|+++.+. ..|+.++ ++.-+|..|.+..|...|.
T Consensus 6 ~F~~a~~~---SPWk~~p--l~~a~~~~e~r~~~Kh~~~ 39 (57)
T PF08437_consen 6 YFRKAYKN---SPWKDIP--LLKAKNSKELRYKAKHLFK 39 (57)
T ss_pred HHHHHHHc---CCCCCCC--CcCCCChHHHHHHHHHHHH
Confidence 46666665 7899998 6888999999999976654
No 81
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=23.16 E-value=50 Score=23.48 Aligned_cols=19 Identities=32% Similarity=0.873 Sum_probs=17.1
Q ss_pred CcccCCCCCCCCCCccCCC
Q 047042 2 GRKCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~~ 20 (283)
...|-.|+..||=..-|++
T Consensus 4 ~~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CCcCcccCCCCcchhhCCC
Confidence 3689999999999999995
No 82
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=22.67 E-value=43 Score=22.73 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=17.0
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|--|+.-||--+.||..
T Consensus 9 Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 9 YVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CEeecCCCCCccHhHCCCC
Confidence 4699999999999999984
No 83
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=21.58 E-value=1.6e+02 Score=22.63 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 125 EEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 125 eEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
++.|.++|..|+..|.-.|..||+ .+ .-++..|+.+.++.
T Consensus 2 d~~D~~il~~L~~~~~~~~~~la~-~l-~~s~~tv~~~l~~L 41 (108)
T smart00344 2 DEIDRKILEELQKDARISLAELAK-KV-GLSPSTVHNRVKRL 41 (108)
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHH-HH-CcCHHHHHHHHHHH
Confidence 367899999999999889999996 55 46777777766543
No 84
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=21.41 E-value=41 Score=26.90 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=8.3
Q ss_pred CCcccCCCCCC
Q 047042 1 MGRKCSHCGNI 11 (283)
Q Consensus 1 m~RkCShCgn~ 11 (283)
|.-+|+|||..
T Consensus 7 ~~~~C~~CG~d 17 (86)
T PF06170_consen 7 VAPRCPHCGLD 17 (86)
T ss_pred CCCcccccCCc
Confidence 46789999853
No 85
>PLN00111 accumulation of photosystem one; Provisional
Probab=21.03 E-value=53 Score=33.34 Aligned_cols=21 Identities=38% Similarity=0.941 Sum_probs=17.2
Q ss_pred cccCCC-----CCCCCCCccCCCCCC
Q 047042 3 RKCSHC-----GNIGHNSRTCTSHKA 23 (283)
Q Consensus 3 RkCShC-----gn~GHNSRTC~~~~~ 23 (283)
+.|.+| |+-||.-|||...+.
T Consensus 121 ~~C~~C~EVHVG~~GH~irtC~g~k~ 146 (399)
T PLN00111 121 HACKFCSEVHVGKVGHLIRTCRGPGS 146 (399)
T ss_pred eecCcCCceeECCCCccccccCCccc
Confidence 568888 678999999988654
Done!