Query 047042
Match_columns 283
No_of_seqs 227 out of 571
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 12:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.5E-16 5.1E-21 118.5 7.3 64 119-185 8-71 (72)
2 2elk_A SPCC24B10.08C protein; 99.6 1.2E-15 4.2E-20 109.8 5.3 48 120-168 9-57 (58)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.7E-15 6E-20 112.9 4.4 53 119-172 7-64 (75)
4 1x41_A Transcriptional adaptor 99.6 3E-15 1E-19 108.1 5.4 49 119-168 7-55 (60)
5 2yus_A SWI/SNF-related matrix- 99.5 2.3E-15 8E-20 115.4 3.4 49 117-167 15-63 (79)
6 1guu_A C-MYB, MYB proto-oncoge 99.5 2.1E-14 7.2E-19 100.1 6.6 48 119-167 2-49 (52)
7 1gvd_A MYB proto-oncogene prot 99.5 3.6E-14 1.2E-18 99.1 5.7 48 119-167 2-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.4 1E-13 3.6E-18 99.3 5.2 49 118-167 6-54 (60)
9 1ity_A TRF1; helix-turn-helix, 99.4 2.9E-13 9.9E-18 99.8 7.1 54 115-169 5-60 (69)
10 1w0t_A Telomeric repeat bindin 99.4 3E-13 1E-17 95.1 6.6 47 120-167 2-50 (53)
11 3sjm_A Telomeric repeat-bindin 99.4 5.3E-13 1.8E-17 98.4 6.8 49 118-167 9-59 (64)
12 2dim_A Cell division cycle 5-l 99.4 3.8E-13 1.3E-17 99.2 5.4 49 118-167 7-55 (70)
13 2eqr_A N-COR1, N-COR, nuclear 99.4 9.4E-13 3.2E-17 95.7 7.1 48 114-163 6-53 (61)
14 2din_A Cell division cycle 5-l 99.3 5.9E-12 2E-16 91.8 6.5 51 119-172 8-58 (66)
15 1gv2_A C-MYB, MYB proto-oncoge 99.2 7.4E-12 2.5E-16 97.6 5.6 48 119-167 3-50 (105)
16 2ltp_A Nuclear receptor corepr 98.9 9.2E-13 3.2E-17 102.3 0.0 52 119-172 15-66 (89)
17 2cqr_A RSGI RUH-043, DNAJ homo 99.2 1E-11 3.6E-16 94.2 5.6 50 117-167 15-67 (73)
18 2iw5_B Protein corest, REST co 99.2 5.5E-12 1.9E-16 114.3 4.5 54 116-171 129-182 (235)
19 2k9n_A MYB24; R2R3 domain, DNA 99.2 1.2E-11 4.2E-16 97.4 5.8 46 121-167 2-47 (107)
20 3zqc_A MYB3; transcription-DNA 99.2 2E-11 7E-16 99.2 6.1 47 120-167 2-48 (131)
21 2ckx_A NGTRF1, telomere bindin 99.2 5.9E-11 2E-15 92.0 7.8 51 121-171 1-54 (83)
22 3osg_A MYB21; transcription-DN 99.2 3.8E-11 1.3E-15 97.2 6.4 50 116-167 7-56 (126)
23 2yqk_A Arginine-glutamic acid 99.2 7.1E-11 2.4E-15 86.7 7.2 46 117-163 6-51 (63)
24 2xag_B REST corepressor 1; ami 99.1 1.7E-11 5.8E-16 120.4 4.3 54 117-172 377-430 (482)
25 1h8a_C AMV V-MYB, MYB transfor 99.1 4.3E-11 1.5E-15 96.6 5.5 48 119-167 26-73 (128)
26 2aje_A Telomere repeat-binding 99.1 1E-10 3.4E-15 94.6 6.7 57 114-170 7-66 (105)
27 2roh_A RTBP1, telomere binding 99.1 2.3E-10 7.7E-15 94.8 7.9 57 115-171 26-85 (122)
28 1irz_A ARR10-B; helix-turn-hel 99.1 2.2E-10 7.6E-15 85.8 6.9 55 116-172 3-62 (64)
29 2cjj_A Radialis; plant develop 99.1 1.7E-10 5.9E-15 91.2 6.5 52 120-172 8-62 (93)
30 2k9n_A MYB24; R2R3 domain, DNA 99.1 2E-10 6.7E-15 90.5 6.6 52 119-172 52-103 (107)
31 3osg_A MYB21; transcription-DN 99.0 3.1E-10 1.1E-14 91.8 6.8 52 119-172 61-112 (126)
32 1gv2_A C-MYB, MYB proto-oncoge 99.0 2.2E-10 7.4E-15 89.3 5.4 47 119-167 55-101 (105)
33 2juh_A Telomere binding protei 99.0 3.9E-10 1.3E-14 93.2 6.5 56 115-170 12-70 (121)
34 2crg_A Metastasis associated p 99.0 6.3E-10 2.2E-14 83.3 7.0 47 116-163 4-50 (70)
35 2llk_A Cyclin-D-binding MYB-li 99.0 5.5E-10 1.9E-14 84.8 5.4 43 119-164 22-64 (73)
36 1h89_C C-MYB, MYB proto-oncoge 99.0 6.3E-10 2.2E-14 92.5 5.6 48 119-167 57-104 (159)
37 3zqc_A MYB3; transcription-DNA 98.9 7.1E-10 2.4E-14 90.1 5.0 50 119-170 53-102 (131)
38 1wgx_A KIAA1903 protein; MYB D 98.9 4.8E-10 1.6E-14 85.7 3.6 46 120-166 8-56 (73)
39 1h8a_C AMV V-MYB, MYB transfor 98.9 7.9E-10 2.7E-14 89.2 4.3 46 119-166 78-123 (128)
40 1h89_C C-MYB, MYB proto-oncoge 98.9 1.4E-10 4.8E-15 96.5 -0.6 48 119-167 5-52 (159)
41 2cqq_A RSGI RUH-037, DNAJ homo 98.9 3E-09 1E-13 80.4 6.0 46 119-166 7-55 (72)
42 4a69_C Nuclear receptor corepr 98.7 8.3E-09 2.8E-13 81.2 4.7 48 114-163 37-84 (94)
43 1x58_A Hypothetical protein 49 98.6 4.2E-08 1.4E-12 73.2 6.1 45 119-164 7-53 (62)
44 4eef_G F-HB80.4, designed hema 98.6 7.1E-09 2.4E-13 79.8 0.9 47 117-164 17-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.4 1.1E-07 3.8E-12 86.9 3.9 51 119-170 7-62 (246)
46 1fex_A TRF2-interacting telome 97.8 2.1E-05 7.2E-10 57.2 4.3 48 120-167 2-57 (59)
47 1ofc_X ISWI protein; nuclear p 97.4 0.00016 5.6E-09 67.5 5.5 54 119-172 211-278 (304)
48 2xag_B REST corepressor 1; ami 97.3 3.2E-05 1.1E-09 76.2 0.0 42 120-163 189-230 (482)
49 1ofc_X ISWI protein; nuclear p 97.3 0.00033 1.1E-08 65.5 6.7 49 121-170 111-159 (304)
50 4b4c_A Chromodomain-helicase-D 96.9 0.0017 5.7E-08 55.5 6.4 52 120-172 134-198 (211)
51 3hm5_A DNA methyltransferase 1 96.6 0.0048 1.6E-07 49.0 6.9 51 121-172 31-85 (93)
52 1ug2_A 2610100B20RIK gene prod 96.4 0.0078 2.7E-07 48.2 6.9 49 118-167 31-81 (95)
53 4b4c_A Chromodomain-helicase-D 96.4 0.0043 1.5E-07 52.9 5.7 56 117-172 4-62 (211)
54 2ebi_A DNA binding protein GT- 96.2 0.0041 1.4E-07 46.9 4.1 51 118-169 2-65 (86)
55 2xb0_X Chromo domain-containin 95.9 0.0044 1.5E-07 57.0 3.5 29 120-148 168-196 (270)
56 2lr8_A CAsp8-associated protei 94.1 0.0036 1.2E-07 47.7 0.0 46 119-166 13-60 (70)
57 2y9y_A Imitation switch protei 95.0 0.031 1.1E-06 53.7 6.1 49 121-170 124-173 (374)
58 4iej_A DNA methyltransferase 1 94.1 0.13 4.5E-06 40.9 6.7 51 121-172 31-85 (93)
59 1dsq_A Nucleic acid binding pr 93.9 0.029 9.9E-07 34.4 2.1 21 2-22 2-22 (26)
60 2y9y_A Imitation switch protei 93.8 0.085 2.9E-06 50.7 6.2 55 119-173 227-295 (374)
61 2hzd_A Transcriptional enhance 90.5 0.34 1.2E-05 37.8 4.7 48 118-166 4-71 (82)
62 1ign_A Protein (RAP1); RAP1,ye 88.3 0.68 2.3E-05 42.4 5.7 28 142-170 173-200 (246)
63 1nc8_A Nucleocapsid protein; H 88.3 0.18 6.2E-06 31.4 1.4 19 3-21 7-25 (29)
64 1a6b_B Momulv, zinc finger pro 87.3 0.28 9.7E-06 33.3 2.0 20 3-22 11-30 (40)
65 2ihx_A Nucleocapsid (NC) prote 85.1 0.41 1.4E-05 34.1 2.0 19 4-22 32-50 (61)
66 2bl6_A Nucleocapsid protein P1 82.6 0.53 1.8E-05 30.3 1.6 17 4-20 2-18 (37)
67 2a51_A Nucleocapsid protein; s 82.0 0.77 2.6E-05 29.9 2.2 16 4-19 2-17 (39)
68 1u6p_A GAG polyprotein; MLV, A 81.9 0.55 1.9E-05 33.9 1.6 21 3-23 24-44 (56)
69 2bl6_A Nucleocapsid protein P1 80.1 0.94 3.2E-05 29.2 2.1 17 4-20 21-37 (37)
70 2ihx_A Nucleocapsid (NC) prote 78.7 0.95 3.3E-05 32.2 1.9 22 1-22 3-24 (61)
71 1a1t_A Nucleocapsid protein; s 77.5 0.98 3.3E-05 31.2 1.7 16 4-19 14-29 (55)
72 2a51_A Nucleocapsid protein; s 76.9 1.1 3.8E-05 29.1 1.7 16 5-20 24-39 (39)
73 2ec7_A GAG polyprotein (PR55GA 76.7 1.2 4.2E-05 30.3 2.0 19 3-21 7-25 (49)
74 2ec7_A GAG polyprotein (PR55GA 76.0 1.4 4.9E-05 30.0 2.2 19 3-21 28-46 (49)
75 2xb0_X Chromo domain-containin 74.8 7.5 0.00026 35.6 7.2 47 120-166 3-52 (270)
76 1a1t_A Nucleocapsid protein; s 73.3 1.5 5E-05 30.3 1.7 19 3-21 34-52 (55)
77 1cl4_A Protein (GAG polyprotei 71.9 0.79 2.7E-05 32.2 0.0 21 2-22 1-21 (60)
78 1cl4_A Protein (GAG polyprotei 69.6 2.5 8.6E-05 29.6 2.2 20 3-22 31-50 (60)
79 2li8_A Protein LIN-28 homolog 63.8 4.3 0.00015 30.2 2.6 18 3-20 25-42 (74)
80 2cqf_A RNA-binding protein LIN 63.5 3.8 0.00013 29.3 2.2 18 3-20 8-25 (63)
81 2cqf_A RNA-binding protein LIN 63.0 3.4 0.00012 29.6 1.8 20 3-22 30-49 (63)
82 3nyb_B Protein AIR2; polya RNA 59.6 4.3 0.00015 31.0 2.0 20 3-22 47-66 (83)
83 2li8_A Protein LIN-28 homolog 58.6 4.9 0.00017 30.0 2.1 20 3-22 47-66 (74)
84 3ts2_A Protein LIN-28 homolog 58.3 4.3 0.00015 33.7 1.9 19 3-21 98-116 (148)
85 2lli_A Protein AIR2; RNA surve 55.7 5.6 0.00019 31.3 2.1 19 3-21 65-83 (124)
86 3nyb_B Protein AIR2; polya RNA 51.9 4.9 0.00017 30.7 1.1 19 3-21 6-24 (83)
87 2li6_A SWI/SNF chromatin-remod 49.3 16 0.00056 28.7 3.9 31 141-172 71-101 (116)
88 2ysa_A Retinoblastoma-binding 48.9 7.4 0.00025 27.8 1.6 20 2-21 7-26 (55)
89 2lli_A Protein AIR2; RNA surve 47.0 9.1 0.00031 30.1 2.1 19 3-21 5-23 (124)
90 2jrz_A Histone demethylase jar 39.8 30 0.001 27.3 4.0 31 141-172 62-96 (117)
91 2eqy_A RBP2 like, jumonji, at 35.1 1.1E+02 0.0038 24.2 6.7 31 141-172 64-98 (122)
92 2lm1_A Lysine-specific demethy 34.9 55 0.0019 25.0 4.8 31 141-172 66-100 (107)
93 1kkx_A Transcription regulator 33.3 27 0.00092 28.1 2.8 31 141-172 70-100 (123)
94 2cxy_A BAF250B subunit, HBAF25 32.9 47 0.0016 26.4 4.2 31 141-172 73-107 (125)
95 2lc3_A E3 ubiquitin-protein li 31.1 1.1E+02 0.0036 24.1 5.8 52 115-170 8-80 (88)
96 2rq5_A Protein jumonji; develo 30.6 44 0.0015 26.9 3.7 31 141-172 64-99 (121)
97 1ig6_A MRF-2, modulator recogn 30.1 26 0.00089 27.0 2.2 31 141-172 55-90 (107)
98 2kk0_A AT-rich interactive dom 29.0 46 0.0016 27.3 3.6 31 141-172 86-121 (145)
99 1c20_A DEAD ringer protein; DN 28.9 63 0.0022 25.7 4.3 31 141-172 74-109 (128)
100 3o2i_A Uncharacterized protein 22.2 52 0.0018 26.9 2.6 27 119-145 47-74 (125)
101 2jxj_A Histone demethylase jar 21.5 50 0.0017 24.8 2.3 31 141-172 58-92 (96)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.5e-16 Score=118.47 Aligned_cols=64 Identities=34% Similarity=0.530 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhhhhccccCCCCccc
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLASDLNKKKRRSSLFD 185 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~~~~k~krR~Sl~D 185 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||++||.+..+ ....+.+.+||+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~-~~~~Rt~~q~k~r~~~~l~~~~~-~g~~~~~~si~s 71 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYFKNKVK-CGLDKETPNQKT 71 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHSC-SCTTCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHHHh-cCCCCCcccccc
Confidence 5679999999999999999999 9999995 99999999999999999999887 366677888876
No 2
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=1.2e-15 Score=109.85 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC-CCCHHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS-TRTPTQVASHAQKYFL 168 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF~ 168 (283)
..+||+|||++|+++|++||.++|..||+ +|+ +||+.||+.||++||+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD-YVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHcc
Confidence 45899999999999999999889999995 999 9999999999999985
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=112.88 Aligned_cols=53 Identities=38% Similarity=0.562 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGK-----GDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGk-----GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+..+||+|||++|+++|++||. ++|..||+ +|++||..||+.||++||.++.+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~-~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD-ELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH-HHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH-HhCCCCHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999996 69999995 99999999999999999976544
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3e-15 Score=108.13 Aligned_cols=49 Identities=27% Similarity=0.551 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFL 168 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~ 168 (283)
...+||+|||++|+++|++||.++|..||+ +|++||+.||+.||++||.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVAN-QMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHH-HHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHH-HhCCCCHHHHHHHHHHHcc
Confidence 456999999999999999999889999995 9999999999999999975
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-15 Score=115.36 Aligned_cols=49 Identities=31% Similarity=0.479 Sum_probs=44.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+....+||+|||++||+||++|| ++|..||+ +|+|||+.||+.||++|+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~-~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK-DDWNKVSE-HVGSRTQDECILHFLRLP 63 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH-HHSSCCHHHHHHHHTTSC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH-HcCCCCHHHHHHHHHHhc
Confidence 34578999999999999999999 79999995 999999999999998774
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.51 E-value=2.1e-14 Score=100.14 Aligned_cols=48 Identities=31% Similarity=0.517 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|++++++||.++|..||+ +|++||+.||+.||++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH-TSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 357999999999999999999999999995 999999999999999986
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.48 E-value=3.6e-14 Score=99.15 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|++++++||.++|..||+ +|++||..||+.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH-HcCCCCHHHHHHHHHHHc
Confidence 357999999999999999999989999995 999999999999999885
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1e-13 Score=99.30 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=45.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
.+.++||+|||++|++++++||.++|..||+ +|++||..||+.||++|+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH-HCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HccCCCHHHHHHHHHHHc
Confidence 3567999999999999999999889999995 899999999999998875
No 9
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.42 E-value=2.9e-13 Score=99.76 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=48.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC--CCCHHHHHHHHHHHHHH
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS--TRTPTQVASHAQKYFLR 169 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF~r 169 (283)
..+++.++||+||+++|+++|++||.++|..||+ +++ +||..||+.+|.+|+..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHH-HSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHH-HcCcCCCCHHHHHHHHHHHcCC
Confidence 4566788999999999999999999889999995 889 99999999999988754
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.41 E-value=3e-13 Score=95.07 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC--CCCHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS--TRTPTQVASHAQKYF 167 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF 167 (283)
.++||+|||++|++++++||.++|..||+ +++ +||..||+.+|.+|.
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILL-HYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HcCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999889999995 899 999999999998875
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.39 E-value=5.3e-13 Score=98.42 Aligned_cols=49 Identities=29% Similarity=0.482 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccC--CCCHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS--TRTPTQVASHAQKYF 167 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~--TRTp~QVrSHAQKYF 167 (283)
.+..+||+|||++|+++|++||.++|..||+ +++ +||+.||+.+|.++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHh
Confidence 3457999999999999999999999999996 655 899999999998764
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.8e-13 Score=99.18 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
.+.++||+|||++|+++|++||.++|..||+ +|++||..||+.||++|+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIAS-LLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHH-HSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH-HhcCCCHHHHHHHHHHHc
Confidence 3567999999999999999999889999995 999999999999998875
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=9.4e-13 Score=95.72 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=44.4
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 114 HQERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 114 ~~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
.++|+...+||+|||++|+++|.+||+ +|..|| .+|++||..||+.||
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLYY 53 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 577888999999999999999999997 999999 599999999998754
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.9e-12 Score=91.84 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.++||+|||++|+++++.||. +|..||+ ++ .||..||+.||++|+....+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhc
Confidence 4569999999999999999998 9999996 66 49999999999999877655
No 15
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.24 E-value=7.4e-12 Score=97.60 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHT-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhh-hhcCCCHHHHHHHHHhcc
Confidence 357999999999999999999989999995 999999999999998874
No 16
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.87 E-value=9.2e-13 Score=102.26 Aligned_cols=52 Identities=31% Similarity=0.438 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||+.|+.++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~-~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR-MVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 4679999999999999999999 8999995 99999999999999988766543
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=1e-11 Score=94.24 Aligned_cols=50 Identities=16% Similarity=0.416 Sum_probs=44.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGK---GDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGk---GdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+....+||.||+.+|+++|++||. .+|..||+ +|++||..||+.||+.+.
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~-~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR-CVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG-GCSSSCHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 345679999999999999999995 38999995 999999999999998664
No 18
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.21 E-value=5.5e-12 Score=114.32 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=48.5
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHh
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
..+...+||+||+++|++||.+||+ +|..||+ +|+|||..||+.||++|+.|+.
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk-~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHhh
Confidence 4456889999999999999999998 9999995 9999999999999998876644
No 19
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.21 E-value=1.2e-11 Score=97.39 Aligned_cols=46 Identities=35% Similarity=0.534 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
++||+|||++|+++|++||.++|..||. +|++||+.||+.||.+|+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHH-HTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhh-hcCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999995 999999999999998875
No 20
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.19 E-value=2e-11 Score=99.18 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
.++||+|||++|+++|++||.++|..||. +|++||+.||+.||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS-FLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT-SCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH-HHCCCCHHHHHHHHhhcc
Confidence 36899999999999999999889999995 999999999999999886
No 21
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.17 E-value=5.9e-11 Score=92.05 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh---ccCCCCHHHHHHHHHHHHHHHh
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRK---FVSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~---~V~TRTp~QVrSHAQKYF~rl~ 171 (283)
.+||+||++.|++|+++||.|+|+.|++. ++..||..||+.+|.+++.+-.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 37999999999999999999999999964 3789999999999999876544
No 22
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.16 E-value=3.8e-11 Score=97.15 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=45.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
...+.++||+|||++|++++++||. +|..||+ +|++||+.||+.||++|+
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~-~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA-TFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH-TCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHhhhc
Confidence 4456789999999999999999998 9999995 999999999999998886
No 23
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=7.1e-11 Score=86.65 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=40.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
+.....||+||+++|++||.+||+ +|..|++++|++||..||..++
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITFY 51 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHHH
Confidence 445679999999999999999999 9999996589999999998643
No 24
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.14 E-value=1.7e-11 Score=120.40 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=47.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
.+...+||+||+++|++||.+||+ ||..||+ +|+|||..||+.||++|+.++.-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~-~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD-VIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH-HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HhCCCCHHHHHHHHHHHHHHhCh
Confidence 356789999999999999999998 9999995 99999999999999988665443
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.13 E-value=4.3e-11 Score=96.57 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|++++++||.++|..||. +|++||..||+.||++|+
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAK-HLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHH-HSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HhcCCcHHHHHHHHHHhc
Confidence 467999999999999999999989999995 999999999999998775
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.11 E-value=1e-10 Score=94.58 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=48.0
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc---cCCCCHHHHHHHHHHHHHHH
Q 047042 114 HQERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF---VSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 114 ~~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~rl 170 (283)
...+++..+||+||++.|++||++||.|+|+.|++.+ +..||..||+.+|.+++..-
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3456778899999999999999999999999999643 27899999999998876443
No 27
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.08 E-value=2.3e-10 Score=94.78 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=49.5
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc---cCCCCHHHHHHHHHHHHHHHh
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF---VSTRTPTQVASHAQKYFLRLA 171 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~rl~ 171 (283)
..|++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++..-.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 456778899999999999999999999999999743 378999999999998875543
No 28
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.08 E-value=2.2e-10 Score=85.77 Aligned_cols=55 Identities=36% Similarity=0.545 Sum_probs=47.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCC---hhhhhhhccC--CCCHHHHHHHHHHHHHHHhh
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGD---WRGISRKFVS--TRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGd---Wk~IA~~~V~--TRTp~QVrSHAQKYF~rl~~ 172 (283)
.++....||+|+|++|++||+++| ++ |+.|-+ +|+ ..|..||+||.|||+.++.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~-~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILD-LMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHH-HHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 356788999999999999999999 45 789984 655 67999999999999998875
No 29
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.07 E-value=1.7e-10 Score=91.18 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGK---GDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGk---GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
...||.||+.+|+++|.+||. .+|..||+ +|++||..||+.||++++..+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~-~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR-AVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999985 36999995 99999999999999988766543
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.07 E-value=2e-10 Score=90.47 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||..+..+..+
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISK-FLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH-HHSSSCHHHHHHHHHHHHHHHHS
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHH-HCCCCCHHHHHHHHHHHHhhHHH
Confidence 4679999999999999999998 9999995 99999999999999887766554
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.04 E-value=3.1e-10 Score=91.83 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||..+..++.-
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAK-FFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT-TSTTCCHHHHHHHHHHHHHHTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHhcCC
Confidence 4679999999999999999996 9999995 99999999999999877766543
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.03 E-value=2.2e-10 Score=89.28 Aligned_cols=47 Identities=30% Similarity=0.598 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||..+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 4679999999999999999997 9999995 999999999999987654
No 33
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.01 E-value=3.9e-10 Score=93.22 Aligned_cols=56 Identities=18% Similarity=0.347 Sum_probs=49.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc---cCCCCHHHHHHHHHHHHHHH
Q 047042 115 QERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKF---VSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 115 ~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~---V~TRTp~QVrSHAQKYF~rl 170 (283)
..+++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++...
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456678899999999999999999999999999743 37899999999999887553
No 34
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.01 E-value=6.3e-10 Score=83.32 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=42.2
Q ss_pred cccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 116 ERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 116 ~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
.|+....||+||+++|++||.+||+ ||..|++++|+|||..||..++
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 3466789999999999999999999 9999995489999999999865
No 35
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.97 E-value=5.5e-10 Score=84.83 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQ 164 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQ 164 (283)
+.++||+|||+++++++++||. +|..||+ ++ +||..||+.+|.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 5679999999999999999998 6999996 77 999999999884
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.95 E-value=6.3e-10 Score=92.54 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.++||+|||++|++++++||.++|..||. ++++||..||+.||++|+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH-TSTTCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 467999999999999999999889999995 999999999999998775
No 37
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.93 E-value=7.1e-10 Score=90.10 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||..++.+.
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAK-LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTT-TSTTCCHHHHHHHHHHTTGGG
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 4569999999999999999996 9999995 999999999999988776443
No 38
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=4.8e-10 Score=85.70 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGK---GDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGk---GdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
...||+||+.+|++||..|++ ++|..||+ +|++||..||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~-~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA-AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH-HTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 457999999999999999997 57999995 99999999999988644
No 39
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.90 E-value=7.9e-10 Score=89.16 Aligned_cols=46 Identities=33% Similarity=0.602 Sum_probs=42.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
+.++||+|||++|++++++||. +|..||+ +|++||..||+.||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~-~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK-LLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG-GSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH-HCCCCCHHHHHHHHHHH
Confidence 4679999999999999999997 9999995 99999999999988654
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.89 E-value=1.4e-10 Score=96.50 Aligned_cols=48 Identities=31% Similarity=0.517 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
+.+.||+|||++|+++|++||.++|..||+ +|++||+.||+.||++|+
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~-~l~~Rt~~qcr~Rw~~~l 52 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN-YLPNRTDVQCQHRWQKVL 52 (159)
T ss_dssp ---------------------------------------CHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HcCCCCHHHHHHHHHHcc
Confidence 356899999999999999999999999995 999999999999998875
No 41
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=3e-09 Score=80.44 Aligned_cols=46 Identities=26% Similarity=0.494 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKG---DWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkG---dWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
+...||.||+.+|..+|.+|+.| +|..||+ ++ .||..||+.||+++
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~-~l-gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH-EL-GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH-HH-TSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-Hh-CCCHHHHHHHHHHH
Confidence 35689999999999999999964 6999995 78 69999999998765
No 42
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.73 E-value=8.3e-09 Score=81.24 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=43.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 114 HQERKKGVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 114 ~~~rkk~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
...|+....||+||+++|.+++.+||+ +|..|+ .+|++||..||..|+
T Consensus 37 ~~~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 37 YKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 345677889999999999999999998 999999 599999999999865
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.65 E-value=4.2e-08 Score=73.21 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhh--ccCCCCHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGDWRGISRK--FVSTRTPTQVASHAQ 164 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGdWk~IA~~--~V~TRTp~QVrSHAQ 164 (283)
+..+||+||++.|++|+++||. .|+.|+.. |+..||...+...|.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r 53 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYH 53 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHH
Confidence 5679999999999999999999 99999942 778999999999664
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.60 E-value=7.1e-09 Score=79.82 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=39.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhccCCCCHHHHHHHHH
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLGKG---DWRGISRKFVSTRTPTQVASHAQ 164 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyGkG---dWk~IA~~~V~TRTp~QVrSHAQ 164 (283)
+.....||.||+++|..||.+|+++ +|..||+ +|++||..||+.|||
T Consensus 17 ~~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~-~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 17 RGSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQ-YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG-GSCSSCHHHHHGGGC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH-HcCCCCHHHHHHHHH
Confidence 3446789999999999999999986 8999995 999999999999986
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.42 E-value=1.1e-07 Score=86.85 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGKGD-----WRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGkGd-----Wk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
+..+||+|||+++|+.+++||..+ |..||+ ++++||..||+.||..|+.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk-~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH-YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT-TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH-HcCCCCHHHHHHHHHHHHhhh
Confidence 456999999999999999998753 999995 999999999999999987553
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.78 E-value=2.1e-05 Score=57.19 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKL--------GKGDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLeky--------GkGdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
..+||+|||+.+++.|.+| |..-|+.|++..++.+|-.++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999 66689999964789999999999998875
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.38 E-value=0.00016 Score=67.55 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hccCCCCHHHHHHHHHHHHHHHhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGK---GDWRGISR-----------KFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGk---GdWk~IA~-----------~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
++..||+|||+.||-+|.+||. |+|..|.. .|+.+||+.++..|++--..-+.+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iek 278 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER 278 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999 99999952 389999999999999755544444
No 48
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.32 E-value=3.2e-05 Score=76.23 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHA 163 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHA 163 (283)
...||+||+.+|.+||.+||+ +|..|+ .+|++||..+|..||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 348999999999999999998 999999 599999999998865
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.32 E-value=0.00033 Score=65.52 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
..||..|-..|+.|+++||+.+|..||. .|+++|+.+|+.|++-|+.+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~-ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAK-DVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTT-SSTTCCHHHHHHHHHHHHHHG
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHhH
Confidence 3699999999999999999999999995 899999999999998776655
No 50
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.87 E-value=0.0017 Score=55.48 Aligned_cols=52 Identities=25% Similarity=0.572 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhh-------------ccCCCCHHHHHHHHHHHHHHHhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISRK-------------FVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~~-------------~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
...||++||..||.||.+||.|+|..|-.. +..+++..++..++ .|++++..
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~-~~Ll~~l~ 198 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRA-DYLIKLLS 198 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHH-HHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHH-HHHHHHHH
Confidence 457999999999999999999999999531 12356667888888 46666543
No 51
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.64 E-value=0.0048 Score=48.98 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----CCCCHHHHHHHHHHHHHHHhh
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFV----STRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V----~TRTp~QVrSHAQKYF~rl~~ 172 (283)
..||.||...|++.+++||- .|-.|+..|- +.||..+++.++-..-.++..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998 9999996442 579999999987554444443
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.43 E-value=0.0078 Score=48.21 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhccCCCCHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGK--GDWRGISRKFVSTRTPTQVASHAQKYF 167 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGk--GdWk~IA~~~V~TRTp~QVrSHAQKYF 167 (283)
...+.||.|||+-.|...++-|. ..|..||+ .++.|++.||..++|...
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~-~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQ-QLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH-HHSSCCHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHHH-HHccCCHHHHHHHHHHHH
Confidence 35679999999999999999985 48999995 899999999999988654
No 53
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.41 E-value=0.0043 Score=52.93 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=43.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC--CCChhhhhhhc-cCCCCHHHHHHHHHHHHHHHhh
Q 047042 117 RKKGVAWTEEEHRKFLMGLEKLG--KGDWRGISRKF-VSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 117 rkk~~~WTeEEh~lFLeGLekyG--kGdWk~IA~~~-V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.....||+.|-+.|+.|+.+|| .++|..|++.. +..||...|+.+++.+..+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999 68999998521 4589999999988877665444
No 54
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.22 E-value=0.0041 Score=46.87 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=38.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC----C-----CChhhhhhhccC----CCCHHHHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLG----K-----GDWRGISRKFVS----TRTPTQVASHAQKYFLR 169 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyG----k-----GdWk~IA~~~V~----TRTp~QVrSHAQKYF~r 169 (283)
+....||.+|-.+||++....- . ..|+.||. .+. .||+.||+..+.+-...
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999987422 1 27999996 443 79999999988654433
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.90 E-value=0.0044 Score=56.96 Aligned_cols=29 Identities=41% Similarity=0.833 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 047042 120 GVAWTEEEHRKFLMGLEKLGKGDWRGISR 148 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyGkGdWk~IA~ 148 (283)
...|+.+||..||.||-+||.|+|..|..
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 35799999999999999999999999964
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.12 E-value=0.0036 Score=47.75 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhccCCCCHHHHHHHHHHH
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGK--GDWRGISRKFVSTRTPTQVASHAQKY 166 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGk--GdWk~IA~~~V~TRTp~QVrSHAQKY 166 (283)
.-..||.|||+..|...++-|. ..|..||+ .+ .||+.||..++|..
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 3568999999999999999985 48999996 66 89999999988764
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.02 E-value=0.031 Score=53.74 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhccC-CCCHHHHHHHHHHHHHHH
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFVS-TRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V~-TRTp~QVrSHAQKYF~rl 170 (283)
..||.-|=..|+.|+++||+.+...||. .|. ++|+.+|+.+++-|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~-ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIAR-ELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHS-SCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHH-HHccCCCHHHHHHHHHHHHHhh
Confidence 3699999999999999999999999995 787 999999999887665443
No 58
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.07 E-value=0.13 Score=40.87 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----CCCCHHHHHHHHHHHHHHHhh
Q 047042 121 VAWTEEEHRKFLMGLEKLGKGDWRGISRKFV----STRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 121 ~~WTeEEh~lFLeGLekyGkGdWk~IA~~~V----~TRTp~QVrSHAQKYF~rl~~ 172 (283)
..||.||-..|++.+++|+- .|--|+..|- ..||..++..|+-..-.++..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999997 9999997664 379999999988666656554
No 59
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=93.94 E-value=0.029 Score=34.38 Aligned_cols=21 Identities=38% Similarity=0.903 Sum_probs=18.2
Q ss_pred CcccCCCCCCCCCCccCCCCC
Q 047042 2 GRKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~~~~ 22 (283)
.++|-.||..||-+|-|+...
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 468999999999999999853
No 60
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.85 E-value=0.085 Score=50.72 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hccCCCCHHHHHHHHHHHHHHHhhh
Q 047042 119 KGVAWTEEEHRKFLMGLEKLGK---GDWRGISR-----------KFVSTRTPTQVASHAQKYFLRLASD 173 (283)
Q Consensus 119 k~~~WTeEEh~lFLeGLekyGk---GdWk~IA~-----------~~V~TRTp~QVrSHAQKYF~rl~~~ 173 (283)
++..||+|||+.+|-+|-+||. |.|..|-. -|+.+||+..+.-|+.--..-+.++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999932 3488999999999996444444443
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=90.50 E-value=0.34 Score=37.76 Aligned_cols=48 Identities=29% Similarity=0.421 Sum_probs=35.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CCh--------------hhhhhhcc-----CCCCHHHHHHHHHHH
Q 047042 118 KKGVAWTEEEHRKFLMGLEKLGK-GDW--------------RGISRKFV-----STRTPTQVASHAQKY 166 (283)
Q Consensus 118 kk~~~WTeEEh~lFLeGLekyGk-GdW--------------k~IA~~~V-----~TRTp~QVrSHAQKY 166 (283)
+....|.++=|..|++||+.|-. |.| .-|+. || ..||.+||-+|-|-.
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~-yI~~~tGk~RtrKQVSShiQvl 71 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVL 71 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHH-HHHHHHSCCCCSHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHH-HHHHHHcccCCccchhHHHHHH
Confidence 35678999999999999998763 122 22332 33 479999999999854
No 62
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=88.34 E-value=0.68 Score=42.44 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=25.0
Q ss_pred ChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 142 DWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 142 dWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
-|+.||+ +.++||...+|.++.|+..+.
T Consensus 173 ~fk~ia~-~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAE-EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHH-HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHH-HCCCCChhhHHHHHHHHHhhc
Confidence 6999995 899999999999999887655
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=88.33 E-value=0.18 Score=31.35 Aligned_cols=19 Identities=37% Similarity=0.990 Sum_probs=17.0
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
.+|-.||..||-+|.|+.-
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4699999999999999874
No 64
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=87.29 E-value=0.28 Score=33.26 Aligned_cols=20 Identities=25% Similarity=0.755 Sum_probs=17.9
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
-+|-.||..||-+|.|+...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 37999999999999999854
No 65
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=85.11 E-value=0.41 Score=34.10 Aligned_cols=19 Identities=32% Similarity=1.052 Sum_probs=11.3
Q ss_pred ccCCCCCCCCCCccCCCCC
Q 047042 4 KCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 4 kCShCgn~GHNSRTC~~~~ 22 (283)
+|-.||..||-+|.|+...
T Consensus 32 ~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp BCTTTCCBSSCGGGCCCCC
T ss_pred eeCCCCCCCCCcCCCcCCC
Confidence 4666666666666666544
No 66
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=82.63 E-value=0.53 Score=30.34 Aligned_cols=17 Identities=41% Similarity=1.003 Sum_probs=11.6
Q ss_pred ccCCCCCCCCCCccCCC
Q 047042 4 KCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 4 kCShCgn~GHNSRTC~~ 20 (283)
+|--||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 46667777777777764
No 67
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=82.00 E-value=0.77 Score=29.90 Aligned_cols=16 Identities=44% Similarity=1.163 Sum_probs=9.9
Q ss_pred ccCCCCCCCCCCccCC
Q 047042 4 KCSHCGNIGHNSRTCT 19 (283)
Q Consensus 4 kCShCgn~GHNSRTC~ 19 (283)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4556666666666665
No 68
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=81.90 E-value=0.55 Score=33.89 Aligned_cols=21 Identities=24% Similarity=0.710 Sum_probs=18.3
Q ss_pred cccCCCCCCCCCCccCCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHKA 23 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~~ 23 (283)
-+|-.||..||-+|.|+....
T Consensus 24 ~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCCC
T ss_pred CcceeCCCCCcccccCcCCcc
Confidence 369999999999999998643
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=80.07 E-value=0.94 Score=29.17 Aligned_cols=17 Identities=41% Similarity=0.862 Sum_probs=15.1
Q ss_pred ccCCCCCCCCCCccCCC
Q 047042 4 KCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 4 kCShCgn~GHNSRTC~~ 20 (283)
+|-.||..||-+|.|++
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999985
No 70
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=78.71 E-value=0.95 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.708 Sum_probs=19.2
Q ss_pred CCcccCCCCCCCCCCccCCCCC
Q 047042 1 MGRKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 1 m~RkCShCgn~GHNSRTC~~~~ 22 (283)
|..+|-.||..||-+|.|+...
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTT
T ss_pred CCCcccccCCCCeehhhCcCCc
Confidence 4578999999999999999853
No 71
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=77.48 E-value=0.98 Score=31.21 Aligned_cols=16 Identities=44% Similarity=1.138 Sum_probs=8.0
Q ss_pred ccCCCCCCCCCCccCC
Q 047042 4 KCSHCGNIGHNSRTCT 19 (283)
Q Consensus 4 kCShCgn~GHNSRTC~ 19 (283)
+|-.||..||-++.|+
T Consensus 14 ~C~~Cg~~GH~a~~C~ 29 (55)
T 1a1t_A 14 KCFNCGKEGHIAKNCR 29 (55)
T ss_dssp BCTTTCCBSSCGGGCS
T ss_pred ceeeeCCCCcChhhcC
Confidence 4555555555555553
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=76.92 E-value=1.1 Score=29.13 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=14.2
Q ss_pred cCCCCCCCCCCccCCC
Q 047042 5 CSHCGNIGHNSRTCTS 20 (283)
Q Consensus 5 CShCgn~GHNSRTC~~ 20 (283)
|-.||..||-+|.|+.
T Consensus 24 C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 24 CWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCSSSCTTTSCC
T ss_pred cccCCCCCCccCcCcC
Confidence 6689999999999984
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.74 E-value=1.2 Score=30.33 Aligned_cols=19 Identities=37% Similarity=0.990 Sum_probs=16.2
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
.+|-.||..||-++.|+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 5788999999999999874
No 74
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=76.03 E-value=1.4 Score=30.00 Aligned_cols=19 Identities=32% Similarity=0.849 Sum_probs=16.9
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|-.||..||-+|.|+..
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSS
T ss_pred CeeCcCCCcCCccCCCcCC
Confidence 3688999999999999975
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=74.79 E-value=7.5 Score=35.58 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCChhhhhhhc-cCCCCHHHHHHHHHHH
Q 047042 120 GVAWTEEEHRKFLMGLEKLG--KGDWRGISRKF-VSTRTPTQVASHAQKY 166 (283)
Q Consensus 120 ~~~WTeEEh~lFLeGLekyG--kGdWk~IA~~~-V~TRTp~QVrSHAQKY 166 (283)
.+.||+.|=+.|+.+|.+|| .+.|..|++.. +..|+...++.-++-.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 45799999999999999999 47899996432 5578887776655443
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=73.32 E-value=1.5 Score=30.31 Aligned_cols=19 Identities=37% Similarity=0.982 Sum_probs=17.0
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|-.||..||-+|.|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4689999999999999974
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=71.86 E-value=0.79 Score=32.22 Aligned_cols=21 Identities=38% Similarity=0.993 Sum_probs=0.0
Q ss_pred CcccCCCCCCCCCCccCCCCC
Q 047042 2 GRKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~~~~ 22 (283)
+++|-.||..||-+|.|+...
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp ---------------------
T ss_pred CCccccCCCCCcCHhhCcCCC
Confidence 468999999999999998853
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=69.56 E-value=2.5 Score=29.59 Aligned_cols=20 Identities=25% Similarity=0.546 Sum_probs=18.0
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
..|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999999854
No 79
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=63.77 E-value=4.3 Score=30.24 Aligned_cols=18 Identities=28% Similarity=1.018 Sum_probs=13.1
Q ss_pred cccCCCCCCCCCCccCCC
Q 047042 3 RKCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~ 20 (283)
.+|-.||..||-++.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 357777777777777774
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.46 E-value=3.8 Score=29.28 Aligned_cols=18 Identities=28% Similarity=1.018 Sum_probs=14.7
Q ss_pred cccCCCCCCCCCCccCCC
Q 047042 3 RKCSHCGNIGHNSRTCTS 20 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~ 20 (283)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 468888888888888876
No 81
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.97 E-value=3.4 Score=29.57 Aligned_cols=20 Identities=30% Similarity=0.772 Sum_probs=17.6
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
.+|-.||..||-+|.|+...
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGGG
T ss_pred CccCCcCCcCCccCcCCCcc
Confidence 57889999999999999853
No 82
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=59.59 E-value=4.3 Score=31.00 Aligned_cols=20 Identities=30% Similarity=0.790 Sum_probs=18.0
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
..|-.||..||=+|.|+..+
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 57999999999999999864
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=58.57 E-value=4.9 Score=29.96 Aligned_cols=20 Identities=30% Similarity=0.772 Sum_probs=17.4
Q ss_pred cccCCCCCCCCCCccCCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSHK 22 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~~ 22 (283)
..|-.||..||-+|.|+...
T Consensus 47 ~~C~~Cg~~GH~ar~Cp~~~ 66 (74)
T 2li8_A 47 KKCHFCQSISHMVASCPLKA 66 (74)
T ss_dssp CCCTTTCCTTSCGGGCTTGG
T ss_pred CccCCcCCcCCccCcCcCCc
Confidence 46889999999999999854
No 84
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=58.26 E-value=4.3 Score=33.66 Aligned_cols=19 Identities=26% Similarity=0.945 Sum_probs=17.0
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
.+|-.||..||-+|.|+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSC
T ss_pred CcccEeCCccchhhhCCCC
Confidence 3699999999999999973
No 85
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=55.68 E-value=5.6 Score=31.28 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=15.6
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|-.||..||.+|.|+..
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCS
T ss_pred ccCCCCCcCCcchhhCCCc
Confidence 4688888888888888874
No 86
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=51.87 E-value=4.9 Score=30.68 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.7
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|-.||..||-+|.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4699999999999999974
No 87
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=49.35 E-value=16 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=24.2
Q ss_pred CChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++-....+++.||++|+.....
T Consensus 71 ~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 71 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 101 (116)
T ss_dssp TCHHHHHH-HHTSCCTTHHHHHHHHHHSHHHH
T ss_pred CcHHHHHH-HhCCChHHHHHHHHHHHHHHHHH
Confidence 58999996 56655589999999999765544
No 88
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.90 E-value=7.4 Score=27.83 Aligned_cols=20 Identities=35% Similarity=0.956 Sum_probs=17.5
Q ss_pred CcccCCCCCCCCCCccCCCC
Q 047042 2 GRKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 2 ~RkCShCgn~GHNSRTC~~~ 21 (283)
...|=-||.-||-.+-|++.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35799999999999999964
No 89
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=47.02 E-value=9.1 Score=30.06 Aligned_cols=19 Identities=32% Similarity=0.837 Sum_probs=13.7
Q ss_pred cccCCCCCCCCCCccCCCC
Q 047042 3 RKCSHCGNIGHNSRTCTSH 21 (283)
Q Consensus 3 RkCShCgn~GHNSRTC~~~ 21 (283)
..|-.|+..||.+|.|+..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 4577777777777777763
No 90
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=39.78 E-value=30 Score=27.33 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=22.7
Q ss_pred CChhhhhhhccCCCC----HHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVSTRT----PTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~TRT----p~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++-.. ..+++.||++|+.....
T Consensus 62 ~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 62 RRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp TTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 58999996 554322 57899999998766554
No 91
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.12 E-value=1.1e+02 Score=24.22 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=23.1
Q ss_pred CChhhhhhhccCCC-C---HHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVSTR-T---PTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~TR-T---p~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++-. + ..+++.|++||+.....
T Consensus 64 k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 64 RKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp TTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 58999996 45432 2 46899999999877766
No 92
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=34.95 E-value=55 Score=24.99 Aligned_cols=31 Identities=6% Similarity=0.256 Sum_probs=22.9
Q ss_pred CChhhhhhhccCC-CC---HHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVST-RT---PTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~T-RT---p~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++- .+ ..+++.|++||+.....
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 48999997 4543 22 47899999999776655
No 93
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=33.29 E-value=27 Score=28.08 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=25.2
Q ss_pred CChhhhhhhccCCCCHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVSTRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ -++--...+++.+|.||+.-...
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 48999996 55555599999999999877766
No 94
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=32.92 E-value=47 Score=26.39 Aligned_cols=31 Identities=13% Similarity=0.407 Sum_probs=23.3
Q ss_pred CChhhhhhhccCCCC----HHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVSTRT----PTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~TRT----p~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++--+ ..+++.||+||+.....
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 48999996 454332 47899999999877766
No 95
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=31.08 E-value=1.1e+02 Score=24.13 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=35.5
Q ss_pred ccccCCCCCCHHH-----------HHHHHHHHHHhCC----------CChhhhhhhccCCCCHHHHHHHHHHHHHHH
Q 047042 115 QERKKGVAWTEEE-----------HRKFLMGLEKLGK----------GDWRGISRKFVSTRTPTQVASHAQKYFLRL 170 (283)
Q Consensus 115 ~~rkk~~~WTeEE-----------h~lFLeGLekyGk----------GdWk~IA~~~V~TRTp~QVrSHAQKYF~rl 170 (283)
.+.-+++.||.|+ ..-++.-|+..|. |+=+.|++ |+.-.|...-|.++|..-
T Consensus 8 ~~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaK----tanK~qLiaAY~~lfE~~ 80 (88)
T 2lc3_A 8 KENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRK----NRNCSQLIAAYKDFCEHG 80 (88)
T ss_dssp HCSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHH----HSCHHHHHHHHHHHHHHT
T ss_pred cccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHh----cCcHHHHHHHHHHHHhcc
Confidence 4455789999999 3345556666553 34555554 899999999887777543
No 96
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=30.56 E-value=44 Score=26.93 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=22.9
Q ss_pred CChhhhhhhccC-CC----CHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVS-TR----TPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~-TR----Tp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|+. -++ .. ...+++.||.||+.....
T Consensus 64 k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 64 KKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 59999996 443 12 357899999999877654
No 97
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=30.10 E-value=26 Score=27.00 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=22.3
Q ss_pred CChhhhhhhccC-----CCCHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVS-----TRTPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~-----TRTp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++ |-...+++.||++|+.....
T Consensus 55 ~~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~ 90 (107)
T 1ig6_A 55 RQWKHIYD-ELGGNPGSTSAATCTRRHYERLILPYER 90 (107)
T ss_dssp TTHHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTTTHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 58999997 444 22357899999999665544
No 98
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.97 E-value=46 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=22.7
Q ss_pred CChhhhhhhccCC-C----CHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVST-R----TPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~T-R----Tp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ -++- . ...+++.+|++|+.....
T Consensus 86 ~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 86 KLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp TCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 58999997 4442 2 257899999999766655
No 99
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.92 E-value=63 Score=25.67 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=23.3
Q ss_pred CChhhhhhhccCC-C----CHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVST-R----TPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~T-R----Tp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++- . ...+++.||.+|+.....
T Consensus 74 k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 74 KLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp TTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 48999997 4442 2 258999999999877665
No 100
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=22.21 E-value=52 Score=26.88 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=21.9
Q ss_pred CCCCCCHHHH-HHHHHHHHHhCCCChhh
Q 047042 119 KGVAWTEEEH-RKFLMGLEKLGKGDWRG 145 (283)
Q Consensus 119 k~~~WTeEEh-~lFLeGLekyGkGdWk~ 145 (283)
....||+||= +++|+|++.--..+|+.
T Consensus 47 H~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 47 HSEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp ESSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred ccccccHHHHHHHHHHHHHhccCCcHHH
Confidence 4568999985 68889998888888874
No 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=21.52 E-value=50 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=21.7
Q ss_pred CChhhhhhhccCC-C---CHHHHHHHHHHHHHHHhh
Q 047042 141 GDWRGISRKFVST-R---TPTQVASHAQKYFLRLAS 172 (283)
Q Consensus 141 GdWk~IA~~~V~T-R---Tp~QVrSHAQKYF~rl~~ 172 (283)
+.|+.|++ .++- . ...+++.|+++|+.....
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~yE~ 92 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPYEL 92 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 58999996 4442 2 257899999998765543
Done!