BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047044
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 5/222 (2%)
Query: 56 FETFFYNQTIDHFNYRPESFTTFRQRYLIYSKHWGGGQAPILAFMGAEEPIDDDLKAIGF 115
+ ++ Q +DHF + + TF QRYL+ K+W IL + G E I GF
Sbjct: 3 YSVLYFQQKVDHFGFN--TVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGF 60
Query: 116 LTENSERLKALVVFMEHRYYGQSVPFGSRSEALNNTNNRGYFNSAQALADYAEILLHIKK 175
+ + +E LKA++VF EHRYYG+S+PFG S ++ + + S QALAD+AE++ H+K+
Sbjct: 61 MWDVAEELKAMLVFAEHRYYGESLPFGDNS--FKDSRHLNFLTSEQALADFAELIKHLKR 118
Query: 176 T-HDATYSPAIVVGGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVT 234
T A P I +GGSYGG LA WFR+KYPH+ +GALA+SAP+ +ED+ P + IVT
Sbjct: 119 TIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVT 178
Query: 235 KNYRDTSETCYQTILKSWAEIQRVGELPDGASILSKQFKTCT 276
++R + C ++I +SW I R+ G L+ C+
Sbjct: 179 TDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCS 220
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 4/221 (1%)
Query: 55 GFETFFYNQTIDHFNYRPESFTTFRQRYLIYSKHWGGGQAPILAFMGAEEPIDDDLKAIG 114
GF+ F+ Q +DHFN+ TF QR+L+ + W G+ PI + G E +
Sbjct: 7 GFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSA 66
Query: 115 FLTENSERLKALVVFMEHRYYGQSVPFGSRSEALNNTNNRGYFNSAQALADYAEILLHIK 174
F+ E + AL+VF EHRYYG+S+PFG++S +T QALAD+AE+L ++
Sbjct: 67 FVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTE---LLTVEQALADFAELLRALR 123
Query: 175 KTHDATYSPAIVVGGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVT 234
+ A +PAI GGSYGG L+ + R+KYPH+ GALA+SAPVL + N ++ VT
Sbjct: 124 RDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVT 183
Query: 235 KNYRDTSETCYQTILKSWAEIQRVGELPDGASILSKQFKTC 275
++ S C Q + +++ +I+ + L + +F TC
Sbjct: 184 ADFEGQSPKCTQGVREAFRQIKDL-FLQGAYDTVRWEFGTC 223
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Query: 53 PD-GFETFFYNQTIDHFNYRPESFTTFRQRYLIYSKHWGGGQAPILAFMGAEEPIDDDLK 111
PD GF+ F+ Q +DHFN+ TF QR+L+ + W G+ PI + G E +
Sbjct: 1 PDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFAN 60
Query: 112 AIGFLTENSERLKALVVFMEHRYYGQSVPFGSRSEALNNTNNRGYFNSAQALADYAEILL 171
F+ E + AL+VF EHRYYG+S+PFG++S +T QALAD+AE+L
Sbjct: 61 NSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTE---LLTVEQALADFAELLR 117
Query: 172 HIKKTHDATYSPAIVVGGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYS 231
+++ A +PAI GGSYGG L+ + R KYPH+ GALA+SAPVL + N ++
Sbjct: 118 ALRRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFR 177
Query: 232 IVTKNYRDTSETCYQTILKSWAEIQRVGELPDGASILSKQFKTC 275
VT ++ S C Q + +++ +I+ + L + +F TC
Sbjct: 178 DVTADFEGQSPKCTQGVREAFRQIKDL-FLQGAYDTVRWEFGTC 220
>pdb|3NED|A Chain A, Mrouge
Length = 231
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYRD 239
GG Y E+ T ++ K P GA ++ + DIT HN Y+IV + R+
Sbjct: 170 GGHYDAEVKTTYKAKKPVQLPGAYNTNTKL----DITSHNEDYTIVEQYERN 217
>pdb|3NEZ|A Chain A, Mrojoa
pdb|3NEZ|D Chain D, Mrojoa
Length = 217
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA ++ Y DIT HN Y+IV + R
Sbjct: 165 GGHYDAEVKTTYKAKKPVQLPGAYNAN----YKLDITSHNEDYTIVEQYER 211
>pdb|3NEZ|B Chain B, Mrojoa
pdb|3NEZ|C Chain C, Mrojoa
Length = 216
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA ++ Y DIT HN Y+IV + R
Sbjct: 164 GGHYDAEVKTTYKAKKPVQLPGAYNAN----YKLDITSHNEDYTIVEQYER 210
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 153 NRGYFNSAQALADYAEILLHIKKTHDATYSPAIVVG 188
+RG F SA +E+ + +++TH A + P I+VG
Sbjct: 89 DRGSFESA------SELRIQLRRTHQADHVPIILVG 118
>pdb|3NF0|A Chain A, Mplum-Ttn
Length = 232
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYRD 239
GG Y E+ T + K P GA + + DIT HN Y+IV + R+
Sbjct: 177 GGHYDAEVKTTYMAKKPVQLPGAYKTDTKL----DITSHNEDYTIVEQYERN 224
>pdb|4H3N|A Chain A, Mplumayc
Length = 232
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + Y DIT HN Y+IV + R
Sbjct: 177 GGHYDAEVKTTYMAKKPVQLPGAYKAD----YKLDITSHNEDYTIVEQYER 223
>pdb|4H3M|A Chain A, Mplumayc-e16a
pdb|4H3M|B Chain B, Mplumayc-e16a
Length = 232
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + Y DIT HN Y+IV + R
Sbjct: 177 GGHYDAEVKTTYMAKKPVQLPGAYKAD----YKLDITSHNEDYTIVEQYER 223
>pdb|2H5Q|A Chain A, Crystal Structure Of Mcherry
Length = 234
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA + + DIT HN Y+IV + R
Sbjct: 173 GGHYDAEVKTTYKAKKPVQLPGAYNVNIKL----DITSHNEDYTIVEQYER 219
>pdb|3KCS|A Chain A, Crystal Structure Of Pamcherry1 In The Dark State
pdb|3KCT|A Chain A, Crystal Structure Of Pamcherry1 In The Photoactivated
State
Length = 234
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA + + DIT HN Y+IV + R
Sbjct: 173 GGHYDAEVKTTYKAKKPVQLPGAYNVNRKL----DITSHNEDYTIVEQYER 219
>pdb|3LF4|B Chain B, Crystal Structure Of Fluorescent Timer Precursor Blue102
Length = 164
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA + + DIT HN Y+IV + R
Sbjct: 103 GGHYDAEVKTTYKAKKPVQLPGAYNVNIKL----DITSHNEDYTIVEQYER 149
>pdb|2QLH|A Chain A, Mplum I65l Mutant
pdb|2QLH|B Chain B, Mplum I65l Mutant
Length = 224
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + + DIT HN Y+IV + R
Sbjct: 169 GGHYDAEVKTTYMAKKPVQLPGAYKTDIKL----DITSHNEDYTIVEQYER 215
>pdb|2QLI|A Chain A, Mplum E16q Mutant
pdb|2QLI|B Chain B, Mplum E16q Mutant
Length = 224
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + + DIT HN Y+IV + R
Sbjct: 169 GGHYDAEVKTTYMAKKPVQLPGAYKTDIKL----DITSHNEDYTIVEQYER 215
>pdb|2QLG|A Chain A, Mplum
pdb|2QLG|B Chain B, Mplum
Length = 224
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + + DIT HN Y+IV + R
Sbjct: 169 GGHYDAEVKTTYMAKKPVQLPGAYKTDIKL----DITSHNEDYTIVEQYER 215
>pdb|1P4X|A Chain A, Crystal Structure Of Sars Protein From Staphylococcus
Aureus
Length = 250
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 123 LKALVVFMEHRYYGQSVPFGSRSEALNNTNNRGYFNSAQALADYAEILLHI 173
LK L+ + H+Y P R ALNN +GY ++ D +IL+H+
Sbjct: 177 LKDLIETIHHKY-----PQTVR--ALNNLKKQGYLIKERSTEDERKILIHM 220
>pdb|3G17|A Chain A, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|B Chain B, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|C Chain C, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|D Chain D, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|E Chain E, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|F Chain F, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|G Chain G, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
pdb|3G17|H Chain H, Structure Of Putative 2-Dehydropantoate 2-Reductase From
Staphylococcus Aureus
Length = 294
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 182 SPAIVVGGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYRDTS 241
S AI+ G+ G +A + PH L + A + Y + PH IV K Y D +
Sbjct: 4 SVAIIGPGAVGTTIAYELQQSLPHTTL--IGRHAKTITYYTV-PHAPAQDIVVKGYEDVT 60
Query: 242 ET 243
T
Sbjct: 61 NT 62
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 18 SSALYNVNGFWF-KLPRTSLSRGLREHYPRILEQNIPDGFETFFYNQTIDHFNYRPESFT 76
S+ +Y+VNG+ F LP S+ R + N D FF+ Q + + NYR ++
Sbjct: 237 SNRMYSVNGYTFGSLPGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTNKNYRIDTIN 296
Query: 77 TF 78
F
Sbjct: 297 LF 298
>pdb|3LF3|A Chain A, Crystal Structure Of Fast Fluorescent Timer Fast-Ft
Length = 220
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T ++ K P GA + + DIT HN Y+IV + R
Sbjct: 166 GGHYDAEVKTTYKAKKPVQLPGAYNVNIKL----DITSHNEDYTIVEQYER 212
>pdb|4H3L|A Chain A, Mplum-e16p
pdb|4H3L|B Chain B, Mplum-e16p
Length = 232
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 188 GGSYGGELATWFRLKYPHIALGALASSAPVLYYEDITPHNAYYSIVTKNYR 238
GG Y E+ T + K P GA + + DIT HN Y+IV + R
Sbjct: 177 GGHYDAEVKTTYMAKKPVQLPGAYKTDIKL----DITSHNEDYTIVEQYER 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,709,321
Number of Sequences: 62578
Number of extensions: 367756
Number of successful extensions: 894
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 24
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)