BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047046
(589 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 1 LCSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAK 60
L S + +DV+I V F HK L++ SG+ ++ F+ + ++ + D +
Sbjct: 23 LRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSI---FTDQLKRNLSVINLDPEINPE 79
Query: 61 AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLN 98
F ++ F Y +++L N++++ A YL+M++ ++
Sbjct: 80 GFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 3 SSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPG--GAK 60
S + +DV+I V F HK L++ SG+ ++ + + KC L ++ +
Sbjct: 28 SRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD-----QLKCNLSVINLDPEINPE 82
Query: 61 AFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLN 98
F ++ F Y +++L N++++ A YL+M++ ++
Sbjct: 83 GFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|3QS7|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS7|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 423
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 455 RVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALT-RNDGHAQARNSQDSIVAV 513
R ++++LF + + G++ S +S++PS + +T G A NS +
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCS----SSKHPSQSALVTIVEKGFINATNSSEDY--- 336
Query: 514 DNMRERVSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKES 573
+ E+ C S++ + + + +W K FP K +G + K CN K
Sbjct: 337 -----EIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ 389
Query: 574 P 574
P
Sbjct: 390 P 390
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 455 RVIVQVLFFEQLRLRTSIAGWFFVSDNLDNSQNPSGNLALT-RNDGHAQARNSQDSIVAV 513
R ++++LF + + G++ S +S++PS + +T G A NS +
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCS----SSKHPSQSALVTIVEKGFINATNSSEDY--- 336
Query: 514 DNMRERVSDLEKECMSMKQEIEKLVKAKGSWNIFSKKFPFRLKSKSSGLKVPKTCNPKES 573
+ E+ C S++ + + + +W K FP K +G + K CN K
Sbjct: 337 -----EIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ 389
Query: 574 P 574
P
Sbjct: 390 P 390
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 4 SGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFL 63
+G D I +GE+ F H+ L S S E A + +E L + A F
Sbjct: 19 AGFLCDCTIVIGEFQFKAHRNVLASFS---EYFGAIYRSTSENNVFLDQSQVK--ADGFQ 73
Query: 64 LVAKFCYGVKIDLTAANVVSLRCAAEYLRMKNFLNE 99
+ +F Y ++L + NV + AA+YL+++ + +
Sbjct: 74 KLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 335 FMLINHDTIDSNCITDEGQLIGGS---HSLTPMTMVANLVDGYLSEVAPDVNLKL-PKFQ 390
F+L D ID +T +IGG SL ++ + ++ G +N+K K
Sbjct: 65 FVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD 124
Query: 391 SLASAIPDYARPLDDGIYRAIDIFLKAHP 419
L+ + D A+ G+++AI+ ++ AHP
Sbjct: 125 VLSETVRDQAKFKGLGLFKAIEGYVLAHP 153
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 484 NSQNPSGNLALTRNDGHAQARNSQDSIVAVDNMRERVSDLEKECMSMKQEI 534
N NP G L + ++ G+A RNS+D + A+ RVS +C+S E+
Sbjct: 257 NCLNPGGTL-VVKSYGYAD-RNSEDVVTALARKFVRVSAARPDCVSSNTEM 305
>pdb|1OHF|A Chain A, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|B Chain B, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|C Chain C, The Refined Structure Of Nudaurelia Capensis Omega Virus
pdb|1OHF|D Chain D, The Refined Structure Of Nudaurelia Capensis Omega Virus
Length = 644
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 328 VQRILDHFMLINHDTIDSN--CITDEGQLIGGSHSLTPMTMVANLVDG 373
++ + D+ + T ++N + D+G IGG ++LTP+ N V+G
Sbjct: 232 LRTVSDYRLTYKSITCEANMPTLVDQGFWIGGHYALTPIATTQNAVEG 279
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 28.5 bits (62), Expect = 9.8, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 22 HKFPLLSRSGVLENLIAEFSGE-AEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAAN 80
HK+ L S V A F G+ AE K + D+ AFL++ K+ Y +IDL A
Sbjct: 27 HKYVLAVGSSVF---YAXFYGDLAEVKSEIHIPDVE--PAAFLILLKYXYSDEIDLEADT 81
Query: 81 VV-SLRCAAEYL 91
V+ +L A +Y+
Sbjct: 82 VLATLYAAKKYI 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,485,700
Number of Sequences: 62578
Number of extensions: 649941
Number of successful extensions: 1353
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 9
length of query: 589
length of database: 14,973,337
effective HSP length: 104
effective length of query: 485
effective length of database: 8,465,225
effective search space: 4105634125
effective search space used: 4105634125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)