Query 047046
Match_columns 589
No_of_seqs 313 out of 1031
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.9E-88 4.1E-93 686.4 22.6 258 178-443 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 6.2E-24 1.4E-28 238.4 18.4 218 3-298 32-260 (571)
3 PHA02713 hypothetical protein; 99.9 2.2E-23 4.7E-28 233.7 15.6 216 3-296 21-246 (557)
4 PHA03098 kelch-like protein; P 99.9 4.8E-21 1E-25 212.6 18.2 212 4-298 6-236 (534)
5 PHA02790 Kelch-like protein; P 99.9 6.6E-22 1.4E-26 218.0 11.3 163 4-220 19-195 (480)
6 PF00651 BTB: BTB/POZ domain; 99.6 1E-14 2.2E-19 128.0 8.9 88 4-94 7-97 (111)
7 smart00225 BTB Broad-Complex, 99.5 5.2E-14 1.1E-18 116.4 8.3 83 9-94 1-83 (90)
8 KOG4350 Uncharacterized conser 99.1 3.1E-10 6.7E-15 120.0 12.6 95 2-99 39-143 (620)
9 KOG2075 Topoisomerase TOP1-int 99.1 1E-09 2.2E-14 118.4 13.3 169 4-219 111-294 (521)
10 KOG4591 Uncharacterized conser 98.5 2.9E-07 6.3E-12 90.2 6.9 117 3-126 62-183 (280)
11 KOG4682 Uncharacterized conser 98.2 4.3E-06 9.3E-11 89.2 8.1 166 4-218 66-245 (488)
12 KOG0783 Uncharacterized conser 98.1 4.3E-06 9.3E-11 95.3 7.8 67 5-73 556-633 (1267)
13 KOG0783 Uncharacterized conser 98.0 1.4E-05 3.1E-10 91.2 7.6 123 7-138 712-847 (1267)
14 smart00512 Skp1 Found in Skp1 97.2 0.001 2.2E-08 59.0 6.8 81 10-93 4-104 (104)
15 PF11822 DUF3342: Domain of un 97.0 0.00062 1.4E-08 71.7 4.5 80 10-94 1-90 (317)
16 PF02214 BTB_2: BTB/POZ domain 96.3 0.011 2.5E-07 51.0 6.4 82 10-94 1-87 (94)
17 KOG2716 Polymerase delta-inter 95.3 0.081 1.7E-06 53.9 8.9 82 10-94 7-91 (230)
18 KOG3473 RNA polymerase II tran 95.0 0.12 2.6E-06 45.9 7.7 75 15-92 25-111 (112)
19 PF03931 Skp1_POZ: Skp1 family 94.9 0.15 3.2E-06 41.2 7.6 55 10-70 3-58 (62)
20 KOG2838 Uncharacterized conser 92.4 0.061 1.3E-06 55.7 1.5 87 6-94 129-219 (401)
21 KOG2838 Uncharacterized conser 91.4 0.33 7.1E-06 50.5 5.5 58 18-78 262-330 (401)
22 PF07707 BACK: BTB And C-termi 90.1 0.16 3.4E-06 43.8 1.6 67 183-277 35-101 (103)
23 KOG1724 SCF ubiquitin ligase, 88.6 1.1 2.5E-05 43.3 6.4 76 15-94 13-113 (162)
24 KOG0511 Ankyrin repeat protein 81.1 2.6 5.6E-05 45.9 5.4 75 17-94 301-378 (516)
25 KOG2714 SETA binding protein S 79.3 6.7 0.00015 43.4 7.9 87 10-99 13-103 (465)
26 smart00875 BACK BTB And C-term 76.4 3.5 7.5E-05 34.8 3.9 39 183-221 35-73 (101)
27 PF04508 Pox_A_type_inc: Viral 69.4 6.1 0.00013 26.3 2.8 19 512-530 2-20 (23)
28 KOG0511 Ankyrin repeat protein 69.3 0.99 2.1E-05 49.0 -1.4 82 7-94 149-232 (516)
29 KOG3840 Uncharaterized conserv 66.2 18 0.00039 38.6 7.0 91 2-94 90-185 (438)
30 KOG1665 AFH1-interacting prote 58.5 35 0.00076 35.1 7.2 84 8-94 9-97 (302)
31 PF14363 AAA_assoc: Domain ass 55.8 7.1 0.00015 34.5 1.7 42 396-438 30-71 (98)
32 PF08581 Tup_N: Tup N-terminal 55.7 21 0.00045 30.7 4.5 27 510-536 38-64 (79)
33 TIGR01834 PHA_synth_III_E poly 49.9 22 0.00047 38.2 4.5 29 511-539 289-317 (320)
34 PF14077 WD40_alt: Alternative 46.3 11 0.00025 29.1 1.2 20 513-532 13-32 (48)
35 KOG2715 Uncharacterized conser 37.1 54 0.0012 32.3 4.6 83 9-94 22-108 (210)
36 COG3510 CmcI Cephalosporin hyd 36.0 19 0.0004 36.4 1.3 35 394-428 184-220 (237)
37 KOG1987 Speckle-type POZ prote 34.3 35 0.00075 35.3 3.1 76 16-94 109-187 (297)
38 PF01466 Skp1: Skp1 family, di 31.3 64 0.0014 27.2 3.7 20 75-94 10-29 (78)
39 PF13764 E3_UbLigase_R4: E3 ub 31.3 26 0.00056 42.1 1.7 76 311-421 252-335 (802)
40 PF01166 TSC22: TSC-22/dip/bun 30.2 70 0.0015 26.1 3.4 32 494-533 12-43 (59)
41 COG2433 Uncharacterized conser 28.6 3.2E+02 0.0069 32.1 9.5 65 361-427 301-367 (652)
42 PF10929 DUF2811: Protein of u 28.4 41 0.00089 27.3 1.9 19 405-423 8-26 (57)
43 PF08172 CASP_C: CASP C termin 25.8 75 0.0016 33.0 3.8 25 513-537 88-112 (248)
44 PRK13182 racA polar chromosome 23.7 73 0.0016 31.4 3.0 23 509-531 123-145 (175)
45 PF11123 DNA_Packaging_2: DNA 22.1 57 0.0012 28.0 1.7 16 405-420 31-46 (82)
46 KOG2245 Poly(A) polymerase and 20.7 29 0.00062 39.4 -0.5 99 27-139 119-230 (562)
47 PF12029 DUF3516: Domain of un 20.4 53 0.0012 36.8 1.5 28 398-425 211-238 (461)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.9e-88 Score=686.38 Aligned_cols=258 Identities=52% Similarity=0.823 Sum_probs=226.6
Q ss_pred CCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccCCcCCCCCCCCccccCCCCCHHHHHHHHHH
Q 047046 178 EDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEE 257 (589)
Q Consensus 178 ~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~qr~LLEt 257 (589)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||+||+|++++..... ............+||.+||+
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~-----~~~~~~~~~~~~~~r~llEt 75 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGS-----SSSAESSTSSENEQRELLET 75 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccc-----cccccccchhHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999985542111 11123345677899999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhhhccccccccccCCCCCCCccchHHHHHHHHHHHHh
Q 047046 258 LVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRIGSQLDQAALEDLLIPNMGYSVETLYDIDCVQRILDHFML 337 (589)
Q Consensus 258 Iv~LLP~~k~~vs~~fLf~LLR~a~~l~as~~Cr~~LE~rIg~qLd~AtldDLLIPs~~~~~~tlyDvd~V~ril~~Fl~ 337 (589)
||+|||.+|+++||+|||+|||+|+++++|..||.+||+|||+|||||||||||||+.+...+|+||||+|+|||++||.
T Consensus 76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~ 155 (258)
T PF03000_consen 76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLS 155 (258)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999933344599999999999999999
Q ss_pred ccCCCCCCCCccccccccCCCCCChhHHHHHHhHhhhhhhhcCCCCCChhHHHHHHHhCCCCCCCCcchhhHHHHHHHHh
Q 047046 338 INHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLDDGIYRAIDIFLKA 417 (589)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~DgLYrAIDiYLka 417 (589)
+++..+........ .....+.+++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+
T Consensus 156 ~~~~~~~~~~~~~~---~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~ 232 (258)
T PF03000_consen 156 QEEEAGEEEESESE---SGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKA 232 (258)
T ss_pred cccccccccccccc---cccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHH
Confidence 86543210000000 011224789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhhhccccccCCCCHHHh
Q 047046 418 HPWLTDSEREQICRLMDCQKLSLEAS 443 (589)
Q Consensus 418 Hp~ls~~Er~~lC~~~dc~KLS~eac 443 (589)
||+||++||++||++|||||||+|||
T Consensus 233 Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 233 HPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cccCCHHHHHHHHhhCCcccCCcccC
Confidence 99999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.91 E-value=6.2e-24 Score=238.43 Aligned_cols=218 Identities=21% Similarity=0.324 Sum_probs=179.1
Q ss_pred CCCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhHH
Q 047046 3 SSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVV 82 (589)
Q Consensus 3 ~~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~ 82 (589)
.++.+|||+|.|++++|++||.||||+|+|||+||++.+.| +.+.+|+|.++ .+++++.+++|+||+++.|+.+||+
T Consensus 32 ~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e-~~~~~i~l~~v--~~~~l~~ll~y~Yt~~i~i~~~nVq 108 (571)
T KOG4441|consen 32 EEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE-SKQKEINLEGV--DPETLELLLDYAYTGKLEISEDNVQ 108 (571)
T ss_pred HhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccc-ccceEEEEecC--CHHHHHHHHHHhhcceEEechHhHH
Confidence 36899999999999999999999999999999999998888 67889999998 4799999999999999999999999
Q ss_pred HHHHHHhhhcHH-------HHHHH-hhcchhh---HHHHHhhhhhHHHHHHhhchhhHHHHHHHHHHcCCCCCCcCCCCC
Q 047046 83 SLRCAAEYLRMK-------NFLNE-VFGNWTD---SIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSG 151 (589)
Q Consensus 83 ~L~~AA~~LqM~-------~FL~~-v~~sw~~---si~~L~sC~~L~~~Ae~~~iv~rcidsLa~kac~d~~~~~~~~~~ 151 (589)
.|+.||.+|||+ +||.+ +.++.+. .++.+++|.+|...|+.+ +..++..+
T Consensus 109 ~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~-------------i~~~F~~v------ 169 (571)
T KOG4441|consen 109 ELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEY-------------ILQHFAEV------ 169 (571)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHH-------------HHHHHHHH------
Confidence 999999999999 89999 8763333 345556666666655542 11221111
Q ss_pred CCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccCCcC
Q 047046 152 RTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSF 231 (589)
Q Consensus 152 ~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~~~~ 231 (589)
|=.||+..|+.+.+..+|.+.....-+|+.++++++.|+++..+.
T Consensus 170 ----------------------------~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~------- 214 (571)
T KOG4441|consen 170 ----------------------------SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE------- 214 (571)
T ss_pred ----------------------------hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh-------
Confidence 114799999999999999999999999999999999999764332
Q ss_pred CCCCCCCccccCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhhhccCCHHHHHHHHHHH
Q 047046 232 QNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEKRI 298 (589)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~qr~LLEtIv~LLP~~k~~vs~~fLf~LLR~a~~l~as~~Cr~~LE~rI 298 (589)
.+.+-..|+++|.. +.++..||...+.....++.+..|+..|..=.
T Consensus 215 ---------------R~~~~~~ll~~vr~------~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 215 ---------------REEHLPALLEAVRL------PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ---------------HHHHHHHHHHhcCc------cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 12345577777774 45789999999999999999999998887644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=233.67 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=163.1
Q ss_pred CCCCCeeEEEEEc-CEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhH
Q 047046 3 SSGLPSDVIIEVG-EWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANV 81 (589)
Q Consensus 3 ~~g~~cDV~i~V~-~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV 81 (589)
..+.+|||+|.|+ |++|++||.||||+|+|||+||++++.|...+.+|+|+++ .+++|+.+++|+||++ |+.+||
T Consensus 21 ~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv 96 (557)
T PHA02713 21 DDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNV 96 (557)
T ss_pred hCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHH
Confidence 4689999999997 8999999999999999999999998876223678999999 5799999999999997 799999
Q ss_pred HHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhchhhHHHHHHHHHHcCCCCCCcCCCCCCC
Q 047046 82 VSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKACADPSLFSWPMSGRT 153 (589)
Q Consensus 82 ~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~iv~rcidsLa~kac~d~~~~~~~~~~~~ 153 (589)
+.|+.||++|||+ +||.+ +.+ .||..+...+..++... ..+....-++.++..+
T Consensus 97 ~~ll~aA~~lqi~~l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~~~~-L~~~a~~~i~~~f~~v-------- 158 (557)
T PHA02713 97 IDVLKCADYLLIDDLVTDCESYIKDYTNH---------DTCIYMYHRLYEMSHIP-IVKYIKRMLMSNIPTL-------- 158 (557)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHhhCCc---------cchHHHHHHHHhccchH-HHHHHHHHHHHHHHHH--------
Confidence 9999999999999 88888 744 46666665555554321 2222222223332211
Q ss_pred CCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhc-ccCCChhhHHHHHHHHHHhhcCccccCCcCC
Q 047046 154 DGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVG-MSSIKQESIAGSIIHYAKRHLPLLGRQSSFQ 232 (589)
Q Consensus 154 ~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~-~~g~~~e~I~~aL~~Yakk~l~~~~r~~~~~ 232 (589)
. . .|||..|+.+.+..+|+... ....+|+.|+++++.|.++.... |
T Consensus 159 --------------~---------~---~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~--r----- 205 (557)
T PHA02713 159 --------------I---------T---TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYIT--E----- 205 (557)
T ss_pred --------------h---------C---ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHH--H-----
Confidence 0 0 37899999999999999977 46778999999999999764221 1
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHhhhccCCHHHHHHHHH
Q 047046 233 NGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLRTSLKLQASQSCREILEK 296 (589)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~qr~LLEtIv~LLP~~k~~vs~~fLf~LLR~a~~l~as~~Cr~~LE~ 296 (589)
.....||+.|.. ..++.++++ .+.....+..++.|+..|+.
T Consensus 206 ----------------~~~~~ll~~VR~------~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 206 ----------------EQLLCILSCIDI------QNLDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred ----------------HHHhhhHhhhhH------hhcchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 123478888884 224556666 55566777889999988766
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.86 E-value=4.8e-21 Score=212.57 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=166.0
Q ss_pred CCCCeeEEEEE--cCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhH
Q 047046 4 SGLPSDVIIEV--GEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANV 81 (589)
Q Consensus 4 ~g~~cDV~i~V--~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV 81 (589)
+|.+|||+|.| +|++|++||.+|+++|+||++||++++. +.+|+|++ .+++|+.+++|+|+|++.|+.+||
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~----~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~ 78 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK----ENEINLNI---DYDSFNEVIKYIYTGKINITSNNV 78 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC----CceEEecC---CHHHHHHHHHHhcCCceEEcHHHH
Confidence 68999999998 9999999999999999999999998775 35788887 479999999999999999999999
Q ss_pred HHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhch---hhHHHHHHHHHHcCCCCCCcCCCC
Q 047046 82 VSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHI---VSRCINSLAMKACADPSLFSWPMS 150 (589)
Q Consensus 82 ~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~i---v~rcidsLa~kac~d~~~~~~~~~ 150 (589)
..|+.||++|||+ +||.+ + ...||..++.+|+.+++ .+.|.+-|+... ..+
T Consensus 79 ~~ll~~A~~l~~~~l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf----~~v----- 140 (534)
T PHA03098 79 KDILSIANYLIIDFLINLCINYIIKII---------DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNI----ELI----- 140 (534)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----HHH-----
Confidence 9999999999999 66666 5 35688888888888874 223334433331 111
Q ss_pred CCCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccCCc
Q 047046 151 GRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSS 230 (589)
Q Consensus 151 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~~~ 230 (589)
. . .+|+..|+.+.++.+|++......+|+.|.++++.|+++....
T Consensus 141 -----------------~---------~---~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~------ 185 (534)
T PHA03098 141 -----------------Y---------N---DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNN------ 185 (534)
T ss_pred -----------------h---------c---CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhh------
Confidence 0 0 3689999999999999999988889999999999999653211
Q ss_pred CCCCCCCCccccCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH------HhhhccCCHHHHHHHHHHH
Q 047046 231 FQNGSRVEPVSIISAPSEEFQRTLLEELVELIPDKKGVAPTKFLLRLLR------TSLKLQASQSCREILEKRI 298 (589)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~LLP~~k~~vs~~fLf~LLR------~a~~l~as~~Cr~~LE~rI 298 (589)
...+-..|+++|+. +.++..+|..+.+ ....+ .+..|+..++...
T Consensus 186 ----------------r~~~~~~ll~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 186 ----------------KYKDICLILKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred ----------------hHhHHHHHHhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 12334578888885 4578888888775 23334 6778887766544
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=6.6e-22 Score=217.98 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=129.6
Q ss_pred CCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEec--CCCCCHHHHHHHHHHHhCCccccChhhH
Q 047046 4 SGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFH--DIPGGAKAFLLVAKFCYGVKIDLTAANV 81 (589)
Q Consensus 4 ~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~--~~pgga~~felvl~FcY~~~i~it~~NV 81 (589)
+|.+|||++ +.|.+|+|||.||||+|+|||+||++++.| +. .+|.+. ++ .+++|+.+++|+|||+|.||.+||
T Consensus 19 ~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~E-s~-~~v~~~~~~v--~~~~l~~lldy~YTg~l~it~~nV 93 (480)
T PHA02790 19 TKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTK-NK-DPVTRVCLDL--DIHSLTSIVIYSYTGKVYIDSHNV 93 (480)
T ss_pred hhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccc-cc-cceEEEecCc--CHHHHHHHHHhheeeeEEEecccH
Confidence 689999877 456699999999999999999999999887 33 356653 77 579999999999999999999999
Q ss_pred HHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhchhhHHHHHHHHHH----cCCCCCCcCCC
Q 047046 82 VSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKA----CADPSLFSWPM 149 (589)
Q Consensus 82 ~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~iv~rcidsLa~ka----c~d~~~~~~~~ 149 (589)
+.|+.||.+|||+ +||.+ +.+ .||.++..+|+.+++ ..|..+| +.++..+.
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~---------~NCl~i~~~A~~y~~-----~~L~~~a~~fi~~nF~~v~--- 156 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDFRK---------EYCVECYMMGIEYGL-----SNLLCHTKDFIAKHFLELE--- 156 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCCc---------chHHHHHHHHHHhCH-----HHHHHHHHHHHHHhHHHHh---
Confidence 9999999999998 89999 744 577777778877775 3333333 33332210
Q ss_pred CCCCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHh
Q 047046 150 SGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKR 220 (589)
Q Consensus 150 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk 220 (589)
. .=+|||..|++ ..+|++.....-+|+.|+++++.|+++
T Consensus 157 ----------------------------~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 157 ----------------------------D-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ----------------------------c-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 0 00368888886 678999998889999999999999974
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.56 E-value=1e-14 Score=127.96 Aligned_cols=88 Identities=30% Similarity=0.333 Sum_probs=77.1
Q ss_pred CCCCeeEEEEEc-CEEEEeehhhhccccHHHHHHhhcc-cccccccceEEecCCCCCHHHHHHHHHHHhCCccccC-hhh
Q 047046 4 SGLPSDVIIEVG-EWSFHLHKFPLLSRSGVLENLIAEF-SGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLT-AAN 80 (589)
Q Consensus 4 ~g~~cDV~i~V~-~~~F~lHK~vLas~S~yfr~lf~~~-~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it-~~N 80 (589)
++.+||++|.|+ +.+|++||.+|+++|+||++||.+. ..+ ....+|.+++++ +++|+.+++|+|++.+.++ .+|
T Consensus 7 ~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~-~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~ 83 (111)
T PF00651_consen 7 SNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE-STVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDEN 83 (111)
T ss_dssp HTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT-SSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTT
T ss_pred CCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccc-cccccccccccc--ccccccccccccCCcccCCHHHH
Confidence 478999999999 8999999999999999999999987 343 334578899995 7999999999999999998 999
Q ss_pred HHHHHHHHhhhcHH
Q 047046 81 VVSLRCAAEYLRMK 94 (589)
Q Consensus 81 V~~L~~AA~~LqM~ 94 (589)
+..++.+|++|+|+
T Consensus 84 ~~~ll~lA~~~~~~ 97 (111)
T PF00651_consen 84 VEELLELADKLQIP 97 (111)
T ss_dssp HHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHhCcH
Confidence 99999999999999
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.51 E-value=5.2e-14 Score=116.38 Aligned_cols=83 Identities=31% Similarity=0.405 Sum_probs=75.9
Q ss_pred eEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhHHHHHHHH
Q 047046 9 DVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAA 88 (589)
Q Consensus 9 DV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~~L~~AA 88 (589)
||++.|||..|++||.+|+++|+||++||.+...+ .....+.+.++ .+++|+.+++|+|++++.++..|+..++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHH
Confidence 78999999999999999999999999999986654 24578888887 5799999999999999999999999999999
Q ss_pred hhhcHH
Q 047046 89 EYLRMK 94 (589)
Q Consensus 89 ~~LqM~ 94 (589)
++++|+
T Consensus 78 ~~~~~~ 83 (90)
T smart00225 78 DYLQIP 83 (90)
T ss_pred HHHCcH
Confidence 999997
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.14 E-value=3.1e-10 Score=119.95 Aligned_cols=95 Identities=23% Similarity=0.317 Sum_probs=78.1
Q ss_pred CCCCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhh-
Q 047046 2 CSSGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAAN- 80 (589)
Q Consensus 2 ~~~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~N- 80 (589)
|+.....||++.|++..|++||.+||++|.|||+|+-+++.| +.+..|.|++- .+++|..+++|+|+|++.++..-
T Consensus 39 ~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~E-s~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~e 115 (620)
T KOG4350|consen 39 FTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQE-SHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVEE 115 (620)
T ss_pred hhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhh-hhhcccccccc--cHHHHHHHHHHHhhcceecccchH
Confidence 567788999999999999999999999999999999999988 56777888764 58999999999999999987643
Q ss_pred --HHHHHHHHhhhcHH-------HHHHH
Q 047046 81 --VVSLRCAAEYLRMK-------NFLNE 99 (589)
Q Consensus 81 --V~~L~~AA~~LqM~-------~FL~~ 99 (589)
....+..|...++. +||.+
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~ 143 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKE 143 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444555444433 77777
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.08 E-value=1e-09 Score=118.41 Aligned_cols=169 Identities=20% Similarity=0.292 Sum_probs=132.9
Q ss_pred CCCCeeEEEEEcC-----EEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccCh
Q 047046 4 SGLPSDVIIEVGE-----WSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTA 78 (589)
Q Consensus 4 ~g~~cDV~i~V~~-----~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~ 78 (589)
+...+|+++.|++ +.||+||++|+..|.-|.+||.+++.+ ....+|.++|+ .+.+|...++|+|+-.+.+.+
T Consensus 111 n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~-~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~ 187 (521)
T KOG2075|consen 111 NELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAE-DASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAA 187 (521)
T ss_pred CcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccc-ccCceeecCCc--ChhHhHHHHHHHhcchhhhhH
Confidence 4678999999973 789999999999999999999998876 24679999999 579999999999999999999
Q ss_pred hhHHHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhchhhHHHHHHHHHH--cCCCCCCcCC
Q 047046 79 ANVVSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHIVSRCINSLAMKA--CADPSLFSWP 148 (589)
Q Consensus 79 ~NV~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~iv~rcidsLa~ka--c~d~~~~~~~ 148 (589)
+||..++.||.-.-++ +||.. ++. .+.+.-|-+|..+ .++-.++++|++.|...+ |.++
T Consensus 188 dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~--~naf~~L~q~A~l---f~ep~Li~~c~e~id~~~~~al~~------ 256 (521)
T KOG2075|consen 188 DTVITTLYAAKKYLVPALERQCVKFLRKNLMA--DNAFLELFQRAKL---FDEPSLISICLEVIDKSFEDALTP------ 256 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHh---hcCHHHHHHHHHHhhhHHHhhhCc------
Confidence 9999999999765555 88888 654 4455566666444 455578899999887653 1111
Q ss_pred CCCCCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHH
Q 047046 149 MSGRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAK 219 (589)
Q Consensus 149 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yak 219 (589)
=||-|+-.+ .++|..|+.... ..+++-.+++++..|+.
T Consensus 257 -------------------------------EGf~did~~-~dt~~evl~r~~-l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 257 -------------------------------EGFCDIDST-RDTYEEVLRRDT-LEAREFRLFEAALKWAE 294 (521)
T ss_pred -------------------------------cceeehhhH-HHHHHHHHhhcc-cchhHHHHHHHHHhhcc
Confidence 135555555 899998887754 34678889999999985
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.47 E-value=2.9e-07 Score=90.16 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=84.7
Q ss_pred CCCCCeeEEEEEc---CEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChh
Q 047046 3 SSGLPSDVIIEVG---EWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAA 79 (589)
Q Consensus 3 ~~g~~cDV~i~V~---~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~ 79 (589)
....++|+++.++ ++.+++||+|||++|++.+ |.++.+| ...+..+.|. .+++|..+++++||..|++-.+
T Consensus 62 Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de--kse~~~~dDa--d~Ea~~t~iRWIYTDEidfk~d 135 (280)
T KOG4591|consen 62 EKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE--KSEELDLDDA--DFEAFHTAIRWIYTDEIDFKED 135 (280)
T ss_pred hcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc--chhhhccccc--CHHHHHHhheeeeccccccccc
Confidence 3567899999998 6789999999999999874 4444443 2345667777 5799999999999999999877
Q ss_pred hHH--HHHHHHhhhcHHHHHHHhhcchhhHHHHHhhhhhHHHHHHhhch
Q 047046 80 NVV--SLRCAAEYLRMKNFLNEVFGNWTDSIRALETCEEVLPHAEELHI 126 (589)
Q Consensus 80 NV~--~L~~AA~~LqM~~FL~~v~~sw~~si~~L~sC~~L~~~Ae~~~i 126 (589)
.+. .|+..|.-+|+. .|..++..=..++-...||..+...||+++.
T Consensus 136 D~~L~el~e~An~FqLe-~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 136 DEFLLELCELANRFQLE-LLKERCEKGLGALLHVDNCIKFYEFAEELNA 183 (280)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhhHhhHHHHHHHHHHhhH
Confidence 654 467777776665 1111111001234456799999999999864
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.17 E-value=4.3e-06 Score=89.20 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=115.8
Q ss_pred CCCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccce--EEecCCCCCHHHHHHHHHHHhCCccccChhhH
Q 047046 4 SGLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCV--LQFHDIPGGAKAFLLVAKFCYGVKIDLTAANV 81 (589)
Q Consensus 4 ~g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~--i~L~~~pgga~~felvl~FcY~~~i~it~~NV 81 (589)
+|.-+||+|.+-|.+-++||.-| .-|+||..||.+...| +.... ++|.|=.-...+|..++.=.|...|+|..+-|
T Consensus 66 q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~e-s~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 66 QGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKE-SSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred cCCCcceehhhccceeeeeeeee-eccHHHHHHhccccCh-hhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHH
Confidence 68889999999999999999755 5699999999998877 44444 45554333689999999999999999999999
Q ss_pred HHHHHHHhhhcHH-------HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhchh---hHHHHHHHHHHcCCCCCCcCCCC
Q 047046 82 VSLRCAAEYLRMK-------NFLNE-VFGNWTDSIRALETCEEVLPHAEELHIV---SRCINSLAMKACADPSLFSWPMS 150 (589)
Q Consensus 82 ~~L~~AA~~LqM~-------~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~iv---~rcidsLa~kac~d~~~~~~~~~ 150 (589)
..+++||.+||+. +-+.+ +- .++-......+..||+. .+|.+-+-... ||+
T Consensus 144 ~gvlAaA~~lqldgl~qrC~evMie~ls---------pkta~~yYea~ckYgle~vk~kc~ewl~~nl--------~~i- 205 (488)
T KOG4682|consen 144 VGVLAAACLLQLDGLIQRCGEVMIETLS---------PKTACGYYEAACKYGLESVKKKCLEWLLNNL--------MTI- 205 (488)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh--------Hhh-
Confidence 9999999999998 22222 21 12333445556666552 13333332221 000
Q ss_pred CCCCCCCCCCCccccCCccCCCCCCCCCCccccccccCChHHHHHHHHHhcccCCC-hhhHHHHHHHHH
Q 047046 151 GRTDGQSPGGTTLWNGIGVSSKPQPVTEDWWYEDVSFLRLPLYKRLILAVGMSSIK-QESIAGSIIHYA 218 (589)
Q Consensus 151 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~dWW~EDl~~L~idlf~rvI~am~~~g~~-~e~I~~aL~~Ya 218 (589)
.+ ..-|-.++++++..++.+-..-.|. +=.+...+..|.
T Consensus 206 ----------------~~-------------~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 206 ----------------QN-------------VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred ----------------hh-------------HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 00 1246778999999999888777776 336777776664
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.15 E-value=4.3e-06 Score=95.28 Aligned_cols=67 Identities=28% Similarity=0.427 Sum_probs=55.6
Q ss_pred CCCeeEEEEEcCEEEEeehhhhccccHHHHHHhhccccc-----------ccccceEEecCCCCCHHHHHHHHHHHhCCc
Q 047046 5 GLPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGE-----------AEKKCVLQFHDIPGGAKAFLLVAKFCYGVK 73 (589)
Q Consensus 5 g~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e-----------~~~~~~i~L~~~pgga~~felvl~FcY~~~ 73 (589)
+-+.|||+.||+.-|++||++|+++|++||+||....+. ....++|.+.++|| .+||.++.|+|+..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc
Confidence 346799999999999999999999999999999764321 12345677889984 99999999999865
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.97 E-value=1.4e-05 Score=91.16 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=84.3
Q ss_pred CeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHh-CCcccc-----Chhh
Q 047046 7 PSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCY-GVKIDL-----TAAN 80 (589)
Q Consensus 7 ~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY-~~~i~i-----t~~N 80 (589)
.|||++. +|+.|+|||.+|.+++.||..||...+.|. ..|.....|-.++.++.+++|.| +-+.++ ..+=
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~---sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMES---SSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhh---ccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 3455554 899999999999999999999999876652 34666666667899999999999 455443 2222
Q ss_pred HHHHHHHHhhhcHH---HHHHH-hhcchhhHHHHHhhhhhHHHHHHhhc---hhhHHHHHHHHHH
Q 047046 81 VVSLRCAAEYLRMK---NFLNE-VFGNWTDSIRALETCEEVLPHAEELH---IVSRCINSLAMKA 138 (589)
Q Consensus 81 V~~L~~AA~~LqM~---~FL~~-v~~sw~~si~~L~sC~~L~~~Ae~~~---iv~rcidsLa~ka 138 (589)
+..++..|+.|=++ .-.++ ++. ...|++|..|+.+|..|+ +-.+|+|-|...+
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~-----kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLR-----KLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-----HhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 44555556555444 11111 111 125789999999888874 4568998876654
No 14
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.18 E-value=0.001 Score=59.03 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=61.7
Q ss_pred EEEEE-cCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCc---------------
Q 047046 10 VIIEV-GEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVK--------------- 73 (589)
Q Consensus 10 V~i~V-~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~--------------- 73 (589)
|++.- +|+.|.+.+.+. ..|+-++.|+.+....+.....|.|++++| .+++.+++||+-.+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55654 899999999955 689999999986432211224789999964 99999999998321
Q ss_pred ----cccChhhHHHHHHHHhhhcH
Q 047046 74 ----IDLTAANVVSLRCAAEYLRM 93 (589)
Q Consensus 74 ----i~it~~NV~~L~~AA~~LqM 93 (589)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11677789999999999985
No 15
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.02 E-value=0.00062 Score=71.71 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=64.7
Q ss_pred EEEEEc------CEEEEeehhhhccccHHHHHHhhc---ccccccccceEEec-CCCCCHHHHHHHHHHHhCCccccChh
Q 047046 10 VIIEVG------EWSFHLHKFPLLSRSGVLENLIAE---FSGEAEKKCVLQFH-DIPGGAKAFLLVAKFCYGVKIDLTAA 79 (589)
Q Consensus 10 V~i~V~------~~~F~lHK~vLas~S~yfr~lf~~---~~~e~~~~~~i~L~-~~pgga~~felvl~FcY~~~i~it~~ 79 (589)
|+|+|- .+.|.|.+.+|.+.=+||+..+.. ...+ .....|.++ |+ .+|+-+++|+++....||+.
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~-~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~ 75 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQR-WEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPS 75 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCc-CCCcceEEecCh----hHHHHHHHHhhcCCCcCCcC
Confidence 466662 357999999999999999999964 2221 122344444 66 69999999999999999999
Q ss_pred hHHHHHHHHhhhcHH
Q 047046 80 NVVSLRCAAEYLRMK 94 (589)
Q Consensus 80 NV~~L~~AA~~LqM~ 94 (589)
||++++-.|+||||+
T Consensus 76 NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 76 NVVSILISSEFLQME 90 (317)
T ss_pred cEEEeEehhhhhccH
Confidence 999999999999999
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.27 E-value=0.011 Score=50.96 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEEEEcCEEEEeehhhhc-cccHHHHHHhhcc--cccccccceEEecCCCCCHHHHHHHHHHHhC-CccccC-hhhHHHH
Q 047046 10 VIIEVGEWSFHLHKFPLL-SRSGVLENLIAEF--SGEAEKKCVLQFHDIPGGAKAFLLVAKFCYG-VKIDLT-AANVVSL 84 (589)
Q Consensus 10 V~i~V~~~~F~lHK~vLa-s~S~yfr~lf~~~--~~e~~~~~~i~L~~~pgga~~felvl~FcY~-~~i~it-~~NV~~L 84 (589)
|+|.|||+.|.+-+..|. ....+|.+|+... .........+-|.- .|+.|+.|++|.-+ +++... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDR---dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDR---DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS----HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEecc---ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999999 5578999999864 11112345666542 57999999999998 777764 6788889
Q ss_pred HHHHhhhcHH
Q 047046 85 RCAAEYLRMK 94 (589)
Q Consensus 85 ~~AA~~LqM~ 94 (589)
+.-|+|.++.
T Consensus 78 ~~Ea~fy~l~ 87 (94)
T PF02214_consen 78 LEEAEFYGLD 87 (94)
T ss_dssp HHHHHHHT-H
T ss_pred HHHHHHcCCC
Confidence 9999999886
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.081 Score=53.88 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=64.9
Q ss_pred EEEEEcCEEEEeehhhhccccHHHHHHhhcccc-cccccceEEecCCCCCHHHHHHHHHHHhCCcccc--ChhhHHHHHH
Q 047046 10 VIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSG-EAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDL--TAANVVSLRC 86 (589)
Q Consensus 10 V~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~-e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~i--t~~NV~~L~~ 86 (589)
|.+.|||..|..+|.-|.-..|||+.|+..... +......|-|+- +|.=|++|++|+=.|.+.| +..++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDR---SpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDR---SPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecC---ChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 567899999999999999999999999987642 101123355543 5689999999999777776 5567779999
Q ss_pred HHhhhcHH
Q 047046 87 AAEYLRMK 94 (589)
Q Consensus 87 AA~~LqM~ 94 (589)
=|+|..++
T Consensus 84 EA~fYlL~ 91 (230)
T KOG2716|consen 84 EAEFYLLD 91 (230)
T ss_pred HHHHhhHH
Confidence 99999887
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.98 E-value=0.12 Score=45.87 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=60.0
Q ss_pred cCEEEEeehhhhccccHHHHHHhhccccc-ccccceEEecCCCCCHHHHHHHHHHH-----hCC------ccccChhhHH
Q 047046 15 GEWSFHLHKFPLLSRSGVLENLIAEFSGE-AEKKCVLQFHDIPGGAKAFLLVAKFC-----YGV------KIDLTAANVV 82 (589)
Q Consensus 15 ~~~~F~lHK~vLas~S~yfr~lf~~~~~e-~~~~~~i~L~~~pgga~~felvl~Fc-----Y~~------~i~it~~NV~ 82 (589)
+|.+|-+-|. .|.-||-+|+|+.+.... .....+|.+.+|| +..++.+..|. |++ +++|.++=+-
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7899998776 778899999999864322 1345689999997 68999998875 443 3678999999
Q ss_pred HHHHHHhhhc
Q 047046 83 SLRCAAEYLR 92 (589)
Q Consensus 83 ~L~~AA~~Lq 92 (589)
.|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999997
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.88 E-value=0.15 Score=41.22 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=43.7
Q ss_pred EEEEE-cCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHh
Q 047046 10 VIIEV-GEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCY 70 (589)
Q Consensus 10 V~i~V-~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY 70 (589)
|+|.- +|+.|.+.+.+ |-.|+.++.|+.....++ ..|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~---~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDED---EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCG---TEEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhcccc---cccccCccC--HHHHHHHHHHHH
Confidence 55655 89999999984 558999999998754431 279999995 599999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=92.39 E-value=0.061 Score=55.69 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCeeEEEEEcCEEEEeehhhhccccHHHHHHhhcccccc-cccceEEecCCCCCHHHHHHHHHHHhCCccc---cChhhH
Q 047046 6 LPSDVIIEVGEWSFHLHKFPLLSRSGVLENLIAEFSGEA-EKKCVLQFHDIPGGAKAFLLVAKFCYGVKID---LTAANV 81 (589)
Q Consensus 6 ~~cDV~i~V~~~~F~lHK~vLas~S~yfr~lf~~~~~e~-~~~~~i~L~~~pgga~~felvl~FcY~~~i~---it~~NV 81 (589)
...||-|......|++||..|+++|++|+-+.....+.+ .....+..-+|. -++|+..+.+.|+|..- +.-.|+
T Consensus 129 ~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fqn~ 206 (401)
T KOG2838|consen 129 VCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQNS 206 (401)
T ss_pred eeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCchH
Confidence 445888888999999999999999999998876543321 123456666774 58999999999998764 444677
Q ss_pred HHHHHHHhhhcHH
Q 047046 82 VSLRCAAEYLRMK 94 (589)
Q Consensus 82 ~~L~~AA~~LqM~ 94 (589)
..|-...+-++-.
T Consensus 207 diL~QL~edFG~~ 219 (401)
T KOG2838|consen 207 DILEQLCEDFGCF 219 (401)
T ss_pred HHHHHHHHhhCCc
Confidence 7776666655543
No 21
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.44 E-value=0.33 Score=50.50 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=40.2
Q ss_pred EEEeehhhhccccHHHHHHhhcccc---cc-----cccceEEecC--CCCCHHHHHH-HHHHHhCCccccCh
Q 047046 18 SFHLHKFPLLSRSGVLENLIAEFSG---EA-----EKKCVLQFHD--IPGGAKAFLL-VAKFCYGVKIDLTA 78 (589)
Q Consensus 18 ~F~lHK~vLas~S~yfr~lf~~~~~---e~-----~~~~~i~L~~--~pgga~~fel-vl~FcY~~~i~it~ 78 (589)
++.+||.+.+++|++||.|+...-. |+ ....+|.+.. || .+|.. ++.|+||..++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchhh
Confidence 5789999999999999999754221 11 1234677654 44 67765 46788998887643
No 22
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=90.12 E-value=0.16 Score=43.78 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=47.1
Q ss_pred cccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhhcCccccCCcCCCCCCCCccccCCCCCHHHHHHHHHHHHHhc
Q 047046 183 EDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRHLPLLGRQSSFQNGSRVEPVSIISAPSEEFQRTLLEELVELI 262 (589)
Q Consensus 183 EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~qr~LLEtIv~LL 262 (589)
+++..||++.+..+++.......++..|.++++.|+++..+. | ......|++.|..
T Consensus 35 ~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~--r--------------------~~~~~~Ll~~iR~-- 90 (103)
T PF07707_consen 35 DEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPEN--R--------------------EEHLKELLSCIRF-- 90 (103)
T ss_dssp HHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHH--H--------------------TTTHHHHHCCCHH--
T ss_pred hhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHH--H--------------------HHHHHHHHHhCCc--
Confidence 588999999999999998887788999999999999765432 1 1234567777775
Q ss_pred CCCCCCCCHHHHHHH
Q 047046 263 PDKKGVAPTKFLLRL 277 (589)
Q Consensus 263 P~~k~~vs~~fLf~L 277 (589)
..+|.++|...
T Consensus 91 ----~~l~~~~L~~~ 101 (103)
T PF07707_consen 91 ----PLLSPEELQNV 101 (103)
T ss_dssp ----HCT-HHHHHHC
T ss_pred ----ccCCHHHHHHH
Confidence 34677776653
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=1.1 Score=43.35 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=56.9
Q ss_pred cCEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCcc--------------------
Q 047046 15 GEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKI-------------------- 74 (589)
Q Consensus 15 ~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i-------------------- 74 (589)
+|+.|.+-.. .|..|.-++.++.+..-. .....|-|+++. +.+|.+|++|||-.+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~-~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCA-DENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCC-ccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 7999999887 567789999888764322 111368888885 5999999999996331
Q ss_pred -----ccChhhHHHHHHHHhhhcHH
Q 047046 75 -----DLTAANVVSLRCAAEYLRMK 94 (589)
Q Consensus 75 -----~it~~NV~~L~~AA~~LqM~ 94 (589)
.+...++..|.-||.||+|.
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~ 113 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIK 113 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccH
Confidence 23455788899999999988
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=81.09 E-value=2.6 Score=45.88 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=57.4
Q ss_pred EEEEeehhhhccccHHHHHHhhcccccccccc---eEEecCCCCCHHHHHHHHHHHhCCccccChhhHHHHHHHHhhhcH
Q 047046 17 WSFHLHKFPLLSRSGVLENLIAEFSGEAEKKC---VLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRCAAEYLRM 93 (589)
Q Consensus 17 ~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~---~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~~L~~AA~~LqM 93 (589)
..+|+|..++ ++..||+.||++.-.|++... ...++.+ .....|.+++|.|+.+-+|-.+-...++--|+.|-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999976 567999999998765522122 2344444 357899999999999999999988888888888866
Q ss_pred H
Q 047046 94 K 94 (589)
Q Consensus 94 ~ 94 (589)
.
T Consensus 378 ~ 378 (516)
T KOG0511|consen 378 A 378 (516)
T ss_pred h
Confidence 6
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=79.35 E-value=6.7 Score=43.39 Aligned_cols=87 Identities=13% Similarity=0.141 Sum_probs=63.7
Q ss_pred EEEEEcCEEEEeehhhhcccc--HHHHHHhhcccccccc-cceEEecCCCCCHHHHHHHHHHHhCCccccChhhHHHHHH
Q 047046 10 VIIEVGEWSFHLHKFPLLSRS--GVLENLIAEFSGEAEK-KCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSLRC 86 (589)
Q Consensus 10 V~i~V~~~~F~lHK~vLas~S--~yfr~lf~~~~~e~~~-~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~~L~~ 86 (589)
|.+.|||+.|.--+--|+... .+|-+|+++....... ..-|-|.- .|+.|..+++|.-|+.+.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDR---DPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDR---DPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecC---CchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 568999999999999888765 7999999754332111 12244432 57999999999999999995544444444
Q ss_pred -HHhhhcHHHHHHH
Q 047046 87 -AAEYLRMKNFLNE 99 (589)
Q Consensus 87 -AA~~LqM~~FL~~ 99 (589)
=|.|.+++.+|.+
T Consensus 90 dEA~fYGl~~llrr 103 (465)
T KOG2714|consen 90 DEAMFYGLTPLLRR 103 (465)
T ss_pred hhhhhcCcHHHHHH
Confidence 8999999977765
No 26
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=76.44 E-value=3.5 Score=34.79 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=34.8
Q ss_pred cccccCChHHHHHHHHHhcccCCChhhHHHHHHHHHHhh
Q 047046 183 EDVSFLRLPLYKRLILAVGMSSIKQESIAGSIIHYAKRH 221 (589)
Q Consensus 183 EDl~~L~idlf~rvI~am~~~g~~~e~I~~aL~~Yakk~ 221 (589)
+++..|+.+.+..+|.+......+++.+.++++.|++..
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC
Confidence 689999999999999998887778899999999999653
No 27
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=69.39 E-value=6.1 Score=26.29 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047046 512 AVDNMRERVSDLEKECMSM 530 (589)
Q Consensus 512 ~l~~m~~rv~eLEke~~~m 530 (589)
||++.|.|+.+||++...-
T Consensus 2 E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSEC 20 (23)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4999999999999987644
No 28
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=69.25 E-value=0.99 Score=48.97 Aligned_cols=82 Identities=18% Similarity=0.009 Sum_probs=52.4
Q ss_pred CeeEEEEE-cCEEEEeehhhhccccHHHHHHhhcccccccccceE-EecCCCCCHHHHHHHHHHHhCCccccChhhHHHH
Q 047046 7 PSDVIIEV-GEWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVL-QFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSL 84 (589)
Q Consensus 7 ~cDV~i~V-~~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i-~L~~~pgga~~felvl~FcY~~~i~it~~NV~~L 84 (589)
-.|++..+ .|..|-+||+.|+++|.||..-+..-.. ...+| .+.-+ +.+|+..++|.|-..-.+-+.--.+|
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~---~~heI~~~~v~---~~~f~~flk~lyl~~na~~~~qynal 222 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV---QGHEIEAHRVI---LSAFSPFLKQLYLNTNAEWKDQYNAL 222 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc---ccCchhhhhhh---HhhhhHHHHHHHHhhhhhhhhHHHHH
Confidence 34888777 7899999999999998877543332211 11334 33444 58999999999954322333333556
Q ss_pred HHHHhhhcHH
Q 047046 85 RCAAEYLRMK 94 (589)
Q Consensus 85 ~~AA~~LqM~ 94 (589)
+....-++..
T Consensus 223 lsi~~kF~~e 232 (516)
T KOG0511|consen 223 LSIEVKFSKE 232 (516)
T ss_pred HhhhhhccHH
Confidence 6655555555
No 29
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.22 E-value=18 Score=38.63 Aligned_cols=91 Identities=18% Similarity=0.279 Sum_probs=65.6
Q ss_pred CCCCCCeeEEEEEcCEEEEeehhhhccccH-HHHHHhhcccc--cccccceEEec-CCCCCHHHHHHHHHHHhCCccccC
Q 047046 2 CSSGLPSDVIIEVGEWSFHLHKFPLLSRSG-VLENLIAEFSG--EAEKKCVLQFH-DIPGGAKAFLLVAKFCYGVKIDLT 77 (589)
Q Consensus 2 ~~~g~~cDV~i~V~~~~F~lHK~vLas~S~-yfr~lf~~~~~--e~~~~~~i~L~-~~pgga~~felvl~FcY~~~i~it 77 (589)
|..|..--++..|++..|-.-+++|-+.-. -+-.||..+.. .-.+..+.++. |+ +...|..+++|--+|.|.-.
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 445556668899999999999998887633 33456654221 00123566664 66 68999999999888888753
Q ss_pred -hhhHHHHHHHHhhhcHH
Q 047046 78 -AANVVSLRCAAEYLRMK 94 (589)
Q Consensus 78 -~~NV~~L~~AA~~LqM~ 94 (589)
.-.|-.|+.|.+||-++
T Consensus 168 ~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVP 185 (438)
T ss_pred CCCchHHHHhhcceEEee
Confidence 35788899999999987
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=58.50 E-value=35 Score=35.09 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=61.9
Q ss_pred eeEEEEEcCEEEEeehhhhccc--cHHHHHHhhccc--ccccccceEEecCCCCCHHHHHHHHHHHhCCcc-ccChhhHH
Q 047046 8 SDVIIEVGEWSFHLHKFPLLSR--SGVLENLIAEFS--GEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKI-DLTAANVV 82 (589)
Q Consensus 8 cDV~i~V~~~~F~lHK~vLas~--S~yfr~lf~~~~--~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i-~it~~NV~ 82 (589)
+=|.+.+||+.|.--..-|.-+ =.-+-+||.+.. .+...+.-+-|.- +|.-||-++.|.-.|.| ..+.-|+.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHH
Confidence 3467889999999888877777 346788998632 1112233455443 45899999999997765 46778999
Q ss_pred HHHHHHhhhcHH
Q 047046 83 SLRCAAEYLRMK 94 (589)
Q Consensus 83 ~L~~AA~~LqM~ 94 (589)
.++.+|.|+|+-
T Consensus 86 gvLeeArff~i~ 97 (302)
T KOG1665|consen 86 GVLEEARFFQIL 97 (302)
T ss_pred HHHHHhhHHhhH
Confidence 999999999987
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=55.81 E-value=7.1 Score=34.47 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=32.7
Q ss_pred CCCCCCCCcchhhHHHHHHHHhCCCCCHHHHhhhccccccCCC
Q 047046 396 IPDYARPLDDGIYRAIDIFLKAHPWLTDSEREQICRLMDCQKL 438 (589)
Q Consensus 396 lP~~aR~~~DgLYrAIDiYLkaHp~ls~~Er~~lC~~~dc~KL 438 (589)
+|++.......+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4455556788999999999999987775 78888887776653
No 32
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.74 E-value=21 Score=30.72 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 047046 510 IVAVDNMRERVSDLEKECMSMKQEIEK 536 (589)
Q Consensus 510 ~~~l~~m~~rv~eLEke~~~mk~~~~~ 536 (589)
..||+.||..|.+||..+..||+..+.
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999998864
No 33
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.87 E-value=22 Score=38.24 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhh
Q 047046 511 VAVDNMRERVSDLEKECMSMKQEIEKLVK 539 (589)
Q Consensus 511 ~~l~~m~~rv~eLEke~~~mk~~~~~~~k 539 (589)
.||+.+..||.|||++...++++++.+.+
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44999999999999999999999998765
No 34
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=46.28 E-value=11 Score=29.08 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 047046 513 VDNMRERVSDLEKECMSMKQ 532 (589)
Q Consensus 513 l~~m~~rv~eLEke~~~mk~ 532 (589)
-+.+|.||+|||.|...+|+
T Consensus 13 ~e~l~vrv~eLEeEV~~LrK 32 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLRK 32 (48)
T ss_pred cchheeeHHHHHHHHHHHHH
Confidence 46789999999999887765
No 35
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=37.07 E-value=54 Score=32.34 Aligned_cols=83 Identities=17% Similarity=0.042 Sum_probs=58.7
Q ss_pred eEEEEEcCEEEEeehhhhcccc-HHHHHHhhccccc--ccc-cceEEecCCCCCHHHHHHHHHHHhCCccccChhhHHHH
Q 047046 9 DVIIEVGEWSFHLHKFPLLSRS-GVLENLIAEFSGE--AEK-KCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVVSL 84 (589)
Q Consensus 9 DV~i~V~~~~F~lHK~vLas~S-~yfr~lf~~~~~e--~~~-~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~~L 84 (589)
=|-+.|||..|.--|.-|.--+ .++.++....+.- +.. ..-.-|. -.|.-|.-|++|.-.|++.++.---..+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID---RDP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID---RDPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec---cCcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 3566899999999999999888 4455555443221 011 1122222 2468999999999999999998666668
Q ss_pred HHHHhhhcHH
Q 047046 85 RCAAEYLRMK 94 (589)
Q Consensus 85 ~~AA~~LqM~ 94 (589)
+.-|+|...+
T Consensus 99 L~EAefyn~~ 108 (210)
T KOG2715|consen 99 LEEAEFYNDP 108 (210)
T ss_pred chhhhccCCh
Confidence 8888888877
No 36
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=36.04 E-value=19 Score=36.39 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=27.5
Q ss_pred HhCC--CCCCCCcchhhHHHHHHHHhCCCCCHHHHhh
Q 047046 394 SAIP--DYARPLDDGIYRAIDIFLKAHPWLTDSEREQ 428 (589)
Q Consensus 394 e~lP--~~aR~~~DgLYrAIDiYLkaHp~ls~~Er~~ 428 (589)
+-+| +..+..-+|=|+||.-|||.||+=-|.++.+
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~~ 220 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTSR 220 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccccchhh
Confidence 4456 6666679999999999999999766666543
No 37
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.26 E-value=35 Score=35.31 Aligned_cols=76 Identities=14% Similarity=0.044 Sum_probs=52.4
Q ss_pred CEEEEeehhhhccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHhCCccccChhhHH---HHHHHHhhhc
Q 047046 16 EWSFHLHKFPLLSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCYGVKIDLTAANVV---SLRCAAEYLR 92 (589)
Q Consensus 16 ~~~F~lHK~vLas~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY~~~i~it~~NV~---~L~~AA~~Lq 92 (589)
+..+..|+.+++++|+-|+.|+.....+ .....+.+.+. +++.|+.+..|.|...-.-+..++. .++++|.-.+
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~-~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK-ESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch-hcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhccccc
Confidence 4559999999999999999998764432 22334456565 4688999999999865554555554 6666665554
Q ss_pred HH
Q 047046 93 MK 94 (589)
Q Consensus 93 M~ 94 (589)
-.
T Consensus 186 ~~ 187 (297)
T KOG1987|consen 186 NR 187 (297)
T ss_pred cH
Confidence 44
No 38
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=31.34 E-value=64 Score=27.15 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=15.7
Q ss_pred ccChhhHHHHHHHHhhhcHH
Q 047046 75 DLTAANVVSLRCAAEYLRMK 94 (589)
Q Consensus 75 ~it~~NV~~L~~AA~~LqM~ 94 (589)
.++...+..|+.||.||+|.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~ 29 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIK 29 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-H
T ss_pred HcCHHHHHHHHHHHHHHcch
Confidence 44778999999999999999
No 39
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=31.26 E-value=26 Score=42.14 Aligned_cols=76 Identities=32% Similarity=0.555 Sum_probs=51.7
Q ss_pred cccCCCCCCCccchHHHHHHHHHHHHhccCCCCCCCCccccccccCCCCCChhHHHHHHhHhhhhhhhcCCCCCChhHHH
Q 047046 311 LIPNMGYSVETLYDIDCVQRILDHFMLINHDTIDSNCITDEGQLIGGSHSLTPMTMVANLVDGYLSEVAPDVNLKLPKFQ 390 (589)
Q Consensus 311 LIPs~~~~~~tlyDvd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~~kF~ 390 (589)
+||...|+ +.+.++-+++||-..-. +|.|=.+..+|..+.+..|.
T Consensus 252 iLP~Lt~G-----~~e~m~~Lv~~F~p~l~------------------------------f~~~D~~~~~~~~~~Le~F~ 296 (802)
T PF13764_consen 252 ILPFLTYG-----NEEKMDALVEHFKPYLD------------------------------FDKFDEEHSPDEQFKLECFC 296 (802)
T ss_pred HhhHHhcC-----CHHHHHHHHHHHHHhcC------------------------------hhhcccccCchHHHHHHHHH
Confidence 56877776 77888999999943111 33333345566678899999
Q ss_pred HHHHhCCCCC--C-----CCcchhhH-HHHHHHHhCCCC
Q 047046 391 SLASAIPDYA--R-----PLDDGIYR-AIDIFLKAHPWL 421 (589)
Q Consensus 391 ~Lae~lP~~a--R-----~~~DgLYr-AIDiYLkaHp~l 421 (589)
.+++++|.++ . ..+=|++. |++--++.+|..
T Consensus 297 ~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 297 EIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred HHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 9999999887 2 23446666 888444456664
No 40
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=30.20 E-value=70 Score=26.09 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.3
Q ss_pred cccchhhhhccCCcchHHHHHHHHHHHHHHHHHHhhhHHH
Q 047046 494 LTRNDGHAQARNSQDSIVAVDNMRERVSDLEKECMSMKQE 533 (589)
Q Consensus 494 ~~re~~~lk~~~~~~~~~~l~~m~~rv~eLEke~~~mk~~ 533 (589)
.+.|-+.||-. +..+..|+.+||.|+.-+|+.
T Consensus 12 VrEEVevLK~~--------I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQ--------IAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 45667777776 777788888888888777665
No 41
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.60 E-value=3.2e+02 Score=32.09 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=54.6
Q ss_pred ChhHHHHHHhHhhhhhhhcCCCCCChhHHHHHHHhCCCCCCCCc--chhhHHHHHHHHhCCCCCHHHHh
Q 047046 361 LTPMTMVANLVDGYLSEVAPDVNLKLPKFQSLASAIPDYARPLD--DGIYRAIDIFLKAHPWLTDSERE 427 (589)
Q Consensus 361 ~~~l~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~--DgLYrAIDiYLkaHp~ls~~Er~ 427 (589)
+....|+|.-++.-|. -||..|++++=+.+-...+-+....| |.|=-|+..|+.-.|.|..-||+
T Consensus 301 P~~V~KiAasf~A~ly--~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~ 367 (652)
T COG2433 301 PETVKKIAASFNAVLY--TPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERK 367 (652)
T ss_pred hHHHHHHHHHcCCccc--CCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899998888885 69999999998888888888888887 88999999999877777766664
No 42
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=28.42 E-value=41 Score=27.28 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHhCCCCCH
Q 047046 405 DGIYRAIDIFLKAHPWLTD 423 (589)
Q Consensus 405 DgLYrAIDiYLkaHp~ls~ 423 (589)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3599999999999998654
No 43
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=25.75 E-value=75 Score=32.96 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHh
Q 047046 513 VDNMRERVSDLEKECMSMKQEIEKL 537 (589)
Q Consensus 513 l~~m~~rv~eLEke~~~mk~~~~~~ 537 (589)
=||.|.|+.|||+|....++++..+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999987776666655
No 44
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.66 E-value=73 Score=31.37 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhH
Q 047046 509 SIVAVDNMRERVSDLEKECMSMK 531 (589)
Q Consensus 509 ~~~~l~~m~~rv~eLEke~~~mk 531 (589)
|+.|||.|..++..||.-...+-
T Consensus 123 hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 123 HRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888876655543
No 45
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.13 E-value=57 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHhCCC
Q 047046 405 DGIYRAIDIFLKAHPW 420 (589)
Q Consensus 405 DgLYrAIDiYLkaHp~ 420 (589)
=.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999973
No 46
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=20.70 E-value=29 Score=39.45 Aligned_cols=99 Identities=24% Similarity=0.478 Sum_probs=65.0
Q ss_pred ccccHHHHHHhhcccccccccceEEecCCCCCHHHHHHHHHHHh-CCccccChhhHHHHHHHH-hhhcHH---HHHHH-h
Q 047046 27 LSRSGVLENLIAEFSGEAEKKCVLQFHDIPGGAKAFLLVAKFCY-GVKIDLTAANVVSLRCAA-EYLRMK---NFLNE-V 100 (589)
Q Consensus 27 as~S~yfr~lf~~~~~e~~~~~~i~L~~~pgga~~felvl~FcY-~~~i~it~~NV~~L~~AA-~~LqM~---~FL~~-v 100 (589)
+++|++|..+..--.+ ....-+|+.+| +||--+++|.| |..|+| ++|- ..+.++ +-++. +
T Consensus 119 v~R~DFF~sf~~mL~~---~~eVteL~~V~---dAfVPiikfKf~GI~IDl--------lfArL~l~~VP~dldl~ddsl 184 (562)
T KOG2245|consen 119 VSRSDFFTSFYDMLKE---RPEVTELHAVE---DAFVPIIKFKFDGIEIDL--------LFARLALPVVPEDLDLSDDSL 184 (562)
T ss_pred ccHHHHHHHHHHHHhc---Ccccccccccc---ccccceEEEEecCeeeee--------eehhcccccCCCcccccchHh
Confidence 5788998776543221 22356788886 79999999999 556654 2222 223333 44444 5
Q ss_pred hcchhh-HHHHHhhhh------hHHHHHHhhchhhHHHHHHHHHHc
Q 047046 101 FGNWTD-SIRALETCE------EVLPHAEELHIVSRCINSLAMKAC 139 (589)
Q Consensus 101 ~~sw~~-si~~L~sC~------~L~~~Ae~~~iv~rcidsLa~kac 139 (589)
+.+..+ ++..|..|. .|.|--+.+.+.=|||.-=|.+=+
T Consensus 185 LknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrg 230 (562)
T KOG2245|consen 185 LKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRG 230 (562)
T ss_pred hhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcc
Confidence 555454 677777775 566788888999999998888743
No 47
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=20.45 E-value=53 Score=36.80 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=26.0
Q ss_pred CCCCCCcchhhHHHHHHHHhCCCCCHHH
Q 047046 398 DYARPLDDGIYRAIDIFLKAHPWLTDSE 425 (589)
Q Consensus 398 ~~aR~~~DgLYrAIDiYLkaHp~ls~~E 425 (589)
.+.+|..|-||-|.++|-+.|||+.+.+
T Consensus 211 tyPkPL~e~L~~af~~y~~~hPWv~~~~ 238 (461)
T PF12029_consen 211 TYPKPLAELLEAAFETYRRGHPWVGDFE 238 (461)
T ss_pred CCCCchHHHHHHHHHHHHhcCCcccCCC
Confidence 4789999999999999999999998877
Done!