BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047047
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 99/228 (43%), Gaps = 50/228 (21%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNR--FMGF--LKNPEAFLRVLQTVLHTTTYRFV 262
G W LP+ S EL+AFL DA ++GF L P +RV + R V
Sbjct: 216 GAWILPDERPLSP----ELAAFL-DAGPPPVYLGFGSLGAPADAVRVAIDAIRAHGRR-V 269
Query: 263 LFTAGYEPLDTAIRVMAPGTSSVLTQRVITQYGISIFNGKLFCFS-GMVPYKYLFPRCLA 321
+ + G+ L V+ G CF+ G V ++ LF R A
Sbjct: 270 ILSRGWADL------------------VLPDDGAD-------CFAIGEVNHQVLFGRVAA 304
Query: 322 AIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPLKRNHLVPDNADETS 381
IHHGG+G+T A AG PQIL P M DQ Y+A R+ LGV + + +P
Sbjct: 305 VIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVG---VAHDGPIPTF----- 356
Query: 382 IKEAAEALSQAIQYALSPRVKECAKEIAERISVEDGVSEAVKNLKEEM 429
++LS A+ AL+P A +A I DG + A + L + +
Sbjct: 357 -----DSLSAALATALTPETHARATAVAGTIRT-DGAAVAARLLLDAV 398
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 93/227 (40%), Gaps = 48/227 (21%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNR-FMGFLKNP---EAFLRVLQTVLHTTTYRFV 262
G W LP+ S EL FL + ++GF P EA ++ V R V
Sbjct: 199 GAWILPDQRPLSA----ELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAV--RAQGRRV 252
Query: 263 LFTAGYEPLDTAIRVMAPGTSSVLTQRVITQYGISIFNGKLFCFSGMVPYKYLFPRCLAA 322
+ ++G+ L I G G V ++ LF R A
Sbjct: 253 VLSSGWAGLG------------------------RIDEGDDCLVVGEVNHQVLFGRVAAV 288
Query: 323 IHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPLKRNHLVPDNADETSI 382
+HHGG+G+T A AG PQ++ P DQ Y+A R+ LGV + D T
Sbjct: 289 VHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVG--------VAHDGPTPT-- 338
Query: 383 KEAAEALSQAIQYALSPRVKECAKEIAERISVEDGVSEAVKNLKEEM 429
E+LS A+ AL+P ++ A +A I DG + A K L E +
Sbjct: 339 ---VESLSAALATALTPGIRARAAAVAGTIRT-DGTTVAAKLLLEAI 381
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNRFMGFLKNPEAFLRVLQTVLHTTTYRFVLFTA 266
G W LP+ S EL AFL +T +V F +
Sbjct: 199 GAWILPDERPLSA----ELEAFLA------------------------AGSTPVYVGFGS 230
Query: 267 GYEPLDTAIRVMAPGTSSVLTQRVITQYG---ISIFNGKLFCFS-GMVPYKYLFPRCLAA 322
P MA +R++ G + + + CF G V + LF R AA
Sbjct: 231 SSRPATADAAKMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAA 290
Query: 323 IHHGGSGSTAAALHAGIPQI----LCPFMLDQFYWAERMFWLGVAPEPLKRNHLVPDNAD 378
IHH +G+T A+ AGIPQI + +++Q Y A+R+ LGV + + VP
Sbjct: 291 IHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVG---VAVDGPVP---- 343
Query: 379 ETSIKEAAEALSQAIQYALSPRVKECAKEIAERISVEDGVSEAVKNLKEEMGL 431
++LS A+ AL+P ++ A +A+ I DG + A + L + + L
Sbjct: 344 ------TIDSLSAALDTALAPEIRARATTVADTIRA-DGTTVAAQLLFDAVSL 389
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 288 QRVITQYG---ISIFNGKLFCFS-GMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQIL 343
+RVI G + + + + CF+ V ++ LF R A IHHG +G+ A AG+PQ++
Sbjct: 268 RRVILSRGWTELVLPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLV 327
Query: 344 CPFMLDQFYWAERMFWLGVAPEPLKRNHLVPDNADETSIKEAAEALSQAIQYALSPRVKE 403
P DQ Y+A R+ LG+ + D T E+LS A+ L+P +
Sbjct: 328 IPRNTDQPYFAGRVAALGIG--------VAHDGPTPTF-----ESLSAALTTVLAPETRA 374
Query: 404 CAKEIA 409
A+ +A
Sbjct: 375 RAEAVA 380
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPLKR 369
VP L P +HHGGSG+T AL AG+PQ+ P+ D F A+ +
Sbjct: 300 VPQAALLPHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA------GAG 353
Query: 370 NHLVPDNADETSIKEAAEAL 389
+HL+PDN S+ AA+ L
Sbjct: 354 DHLLPDNISPDSVSGAAKRL 373
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 308 GMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAER----MFWLGVA 363
G P L C A +HHGG G+ A+ AGIPQ+L P DQF R +G+
Sbjct: 289 GWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLV 348
Query: 364 PEPLKRN-----HLVPDNADETSIKEAAEALSQAIQYALSPRVKECAKEIAERIS 413
K + L+ D + T+ +E E + AL P E + I ERIS
Sbjct: 349 STSDKVDADLLRRLIGDESLRTAAREVREEM-----VAL-PTPAETVRRIVERIS 397
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 308 GMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAER----MFWLGVA 363
G P L C A +HHGG G+ A+ AGIPQ+L P DQF R +G+
Sbjct: 289 GWTPLHTLLRTCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLV 348
Query: 364 PEPLKRN-----HLVPDNADETSIKEAAEALSQAIQYALSPRVKECAKEIAERIS 413
K + L+ D + T+ +E E + P E + I ERIS
Sbjct: 349 STSDKVDADLLRRLIGDESLRTAAREVRE------EXVALPTPAETVRRIVERIS 397
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 308 GMVPYKYLFPRCLAAIHHGGSGS-TAAALHAGIPQILCPFMLDQFYWAERM--FWLGVAP 364
G VP L P C A +HHGG GS AA+H G+PQ++ P D A+R F G+A
Sbjct: 325 GFVPMHALLPTCAATVHHGGPGSWHTAAIH-GVPQVILPDGWDTGVRAQRTQEFGAGIA- 382
Query: 365 EPLKRNHLVPDNADET 380
L L PD E+
Sbjct: 383 --LPVPELTPDQLRES 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVA 363
+P L C A IHHGGSG+ AL AG+PQ + P Q + + LG+
Sbjct: 296 IPLGALLETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIG 349
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVA 363
+P L C A IHHGGSG+ AL AG+PQ + P Q + + LG+
Sbjct: 296 IPLGALLETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIG 349
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCP-FMLDQFYWAERMFWLGVAPEPLK 368
+P+ + A + HG +G+ A AG+P +L P F + AER+ LG+
Sbjct: 289 IPFHSVLAHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG----- 343
Query: 369 RNHLVPDNADETSIKEAAEALS 390
+ L PD + SI+EA E L+
Sbjct: 344 -SVLRPDQLEPASIREAVERLA 364
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 307 SGMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPE 365
+G P + P C +HHGG G+T L G+PQ+ P + + + A + G E
Sbjct: 289 AGQFPLSAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVE 347
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 307 SGMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPE 365
+G P + P C +HHGG G+T L G+PQ+ P + + + A + G E
Sbjct: 288 AGQFPLSAIXPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVE 346
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPLKR 369
VP + + A I H G GST AL +P + P + +Q AER+ LG+
Sbjct: 313 VPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG------ 366
Query: 370 NHLVPDNADETSIKEAAEALSQAIQYALSPRVKECAKEI 408
H+ D ++EA L+ A ++ R+ +EI
Sbjct: 367 RHIPRDQVTAEKLREA--VLAVASDPGVAERLAAVRQEI 403
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 308 GMVPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPL 367
G P + P C +HH G ST L AG+PQ+L P A R+ G A
Sbjct: 269 GWTPLDVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAA---- 324
Query: 368 KRNHLVPDNADETSIKEAAEALSQAIQYALSPRVKECAKEIA 409
L+P +I ++ + L YA R ++ ++EI+
Sbjct: 325 --IALLPGEDSTEAIADSCQELQAKDTYAR--RAQDLSREIS 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 323 IHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVAPEPLKRNHLVPDNADETSI 382
+ H G+G + L P I P +DQF A+ + LGVA L + A +
Sbjct: 304 VTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA------RKLATEEATADLL 357
Query: 383 KEAAEALSQAIQYALSPRVKECAKEIAERISVEDGVSEAVKNLKEEM 429
+E A AL P V + I ++ E G A ++ E+
Sbjct: 358 RETALALVD------DPEVARRLRRIQAEMAQEGGTRRAADLIEAEL 398
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLG 361
VP C I GGSG+ A GIPQ++ P DQF +A + G
Sbjct: 278 VPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAG 329
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLG 361
VP C I GGSG+ A GIPQ++ P DQF +A + G
Sbjct: 278 VPLNLFLRTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAG 329
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 317 PRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQ 350
P+ A I HGG+ A++ GIP + P DQ
Sbjct: 85 PKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|1UD3|A Chain A, Crystal Structure Of Amyk38 N289h Mutant
Length = 480
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 148 ENWGSWRSEELNLCACPFTDPVTGLPTWYDRASSPKLLYGFSKEIVECPDYWPSSVRVCG 207
++WGSW ++EL+L D + +P WY +++ +YW V
Sbjct: 213 KDWGSWFTDELDLDGYRL-DAIKHIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALE 271
Query: 208 FWFLPNSWQYSC 219
F+ +W+ S
Sbjct: 272 FYLDEMNWEMSL 283
>pdb|1UD2|A Chain A, Crystal Structure Of Calcium-Free Alpha-Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38)
pdb|1UD4|A Chain A, Crystal Structure Of Calcium Free Alpha Amylase From
Bacillus Sp. Strain Ksm-K38 (Amyk38, In Calcium
Containing Solution)
pdb|1UD5|A Chain A, Crystal Structure Of Amyk38 With Rubidium Ion
pdb|1UD6|A Chain A, Crystal Structure Of Amyk38 With Potassium Ion
pdb|1UD8|A Chain A, Crystal Structure Of Amyk38 With Lithium Ion
Length = 480
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 148 ENWGSWRSEELNLCACPFTDPVTGLPTWYDRASSPKLLYGFSKEIVECPDYWPSSVRVCG 207
++WGSW ++EL+L D + +P WY +++ +YW V
Sbjct: 213 KDWGSWFTDELDLDGYRL-DAIKHIPFWYTSDWVRHQRNEADQDLFVVGEYWKDDVGALE 271
Query: 208 FWFLPNSWQYSC 219
F+ +W+ S
Sbjct: 272 FYLDEMNWEMSL 283
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVA 363
VP+ + + + HGG G+ AL+ G P ++ P D A R+ LG+
Sbjct: 305 VPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 310 VPYKYLFPRCLAAIHHGGSGSTAAALHAGIPQILCPFMLDQFYWAERMFWLGVA 363
VP+ + + + HGG G+ AL+ G P ++ P D A R+ LG+
Sbjct: 305 VPHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLG 358
>pdb|2XGK|A Chain A, Virus Like Particle Of L172w Mutant Of Minute Virus Of
Mice - The Immunosuppressive Strain
Length = 587
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNRFMGFLKNPEAFLRVLQTV 253
G W P+ WQY C +L+ LD E F VL+TV
Sbjct: 120 GVWLQPSDWQYICNTMSQLNLVSLDQ-----------EIFNVVLKTV 155
>pdb|1MVM|A Chain A, Mvm(Strain I), Complex(Viral CoatDNA), VP2, PH7.5, T4
Degrees C
pdb|1Z1C|A Chain A, Structural Determinants Of Tissue Tropism And In Vivo
Pathogenicity For The Parvovirus Minute Virus Of Mice
Length = 587
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNRFMGFLKNPEAFLRVLQTV 253
G W P+ WQY C +L+ LD E F VL+TV
Sbjct: 120 GVWLQPSDWQYICNTMSQLNLVSLDQ-----------EIFNVVLKTV 155
>pdb|1Z14|A Chain A, Structural Determinants Of Tissue Tropism And In Vivo
Pathogenicity For The Parvovirus Minute Virus Of Mice
Length = 549
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 207 GFWFLPNSWQYSCKQCGELSAFLLDANNRFMGFLKNPEAFLRVLQTV 253
G W P+ WQY C +L+ LD E F VL+TV
Sbjct: 82 GVWLQPSDWQYICNTMSQLNLVSLDQ-----------EIFNVVLKTV 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,009,225
Number of Sequences: 62578
Number of extensions: 532446
Number of successful extensions: 1387
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 26
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)