Your job contains 1 sequence.
>047048
METRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQP
VTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVP
AGILDFLMDANIRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKLS
KQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVPASRARGRKRISRK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047048
(240 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094593 - symbol:XRCC4 "homolog of X-ray repai... 670 7.4e-66 1
TAIR|locus:2197679 - symbol:AT1G61410 species:3702 "Arabi... 151 7.4e-11 1
UNIPROTKB|Q13426 - symbol:XRCC4 "DNA repair protein XRCC4... 81 0.00016 2
UNIPROTKB|F1REZ3 - symbol:XRCC4 "Uncharacterized protein"... 82 0.00046 2
>TAIR|locus:2094593 [details] [associations]
symbol:XRCC4 "homolog of X-ray repair cross complementing
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] InterPro:IPR005479 InterPro:IPR009089
InterPro:IPR010585 InterPro:IPR014751 Pfam:PF06632 PROSITE:PS00867
GO:GO:0005524 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0006310 GO:GO:0006302 EMBL:AB026655
Gene3D:1.20.5.370 Gene3D:2.170.210.10 EMBL:AF233528 EMBL:AK175267
EMBL:BT020394 EMBL:BT021921 IPI:IPI00530149 RefSeq:NP_001154639.1
RefSeq:NP_188951.2 UniGene:At.36458 UniGene:At.6127
ProteinModelPortal:Q682V0 SMR:Q682V0 IntAct:Q682V0 STRING:Q682V0
PaxDb:Q682V0 PRIDE:Q682V0 ProMEX:Q682V0 EnsemblPlants:AT3G23100.1
EnsemblPlants:AT3G23100.2 GeneID:821885 KEGG:ath:AT3G23100
TAIR:At3g23100 eggNOG:NOG272983 HOGENOM:HOG000240401
InParanoid:Q682V0 KO:K10886 OMA:RYLAFQQ PhylomeDB:Q682V0
ProtClustDB:CLSN2690562 Genevestigator:Q682V0 GermOnline:AT3G23100
Uniprot:Q682V0
Length = 264
Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
Identities = 141/254 (55%), Positives = 173/254 (68%)
Query: 2 ETRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPV 61
+T+ TCL+LEI A DPIFVKGTW S FD+S+TDG ++W+CNA+EE+V +RAA WDQPV
Sbjct: 22 KTKHTCLRLEISGA-DPIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWDQPV 80
Query: 62 TEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPA 121
+EY+KLAE+YLGFQQP VY F+DA +G KRLSWTFEKEGTKLEWRWKC P+ +SKK+
Sbjct: 81 SEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKITV 140
Query: 122 GILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVL 165
GILDFLM+ANIRLS AE+CLAQ E+ +EK EFESA YAKFL VL
Sbjct: 141 GILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVL 200
Query: 166 NSKKSKLRELQDKLSKQAVMGDLQQXXXXXXXXXXXXXXXXXXXKSEEEPAKDITSTSIG 225
N+KK+KLR L+DK V+ + + KSEEE +K TS
Sbjct: 201 NAKKAKLRALRDKEDSVRVVEEEESTDKAESFESGRSDDE----KSEEEASKKATS---- 252
Query: 226 VPASRARGRKRISR 239
S+ARG KR +R
Sbjct: 253 ---SKARGGKRAAR 263
>TAIR|locus:2197679 [details] [associations]
symbol:AT1G61410 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR010585 InterPro:IPR014751 Pfam:PF06632 EMBL:CP002684
GO:GO:0005634 GO:GO:0003677 GO:GO:0006310 GO:GO:0006302
Gene3D:1.20.5.370 UniGene:At.36458 EMBL:BT029253 IPI:IPI00525492
RefSeq:NP_564776.1 ProteinModelPortal:Q058G5 SMR:Q058G5
STRING:Q058G5 EnsemblPlants:AT1G61410.1 GeneID:842435
KEGG:ath:AT1G61410 TAIR:At1g61410 InParanoid:Q058G5
PhylomeDB:Q058G5 Genevestigator:Q058G5 Uniprot:Q058G5
Length = 118
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 43/109 (39%), Positives = 60/109 (55%)
Query: 132 IRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKL-SKQAVMGDLQQ 190
++ AE+CLAQ E+ +EK EFE+A YAKFL VLN+KK+KLR ++DK S +AV +
Sbjct: 21 MKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAKLRAVRDKEDSVRAV-----E 75
Query: 191 XXXXXXXXXXXXXXXXXXXKSEEEPAKDITSTSIGVPASRARGRKRISR 239
+S EE ++ TS S+ARG KR +R
Sbjct: 76 EEESTYKAESFESGRSDDEQSGEEASEKATS-------SKARGGKRAAR 117
>UNIPROTKB|Q13426 [details] [associations]
symbol:XRCC4 "DNA repair protein XRCC4" species:9606 "Homo
sapiens" [GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0002328 "pro-B cell differentiation" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IEA] [GO:0010332
"response to gamma radiation" evidence=IEA] [GO:0033077 "T cell
differentiation in thymus" evidence=IEA] [GO:0033152
"immunoglobulin V(D)J recombination" evidence=IEA] [GO:0043524
"negative regulation of neuron apoptotic process" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0048146 "positive
regulation of fibroblast proliferation" evidence=IEA] [GO:0050769
"positive regulation of neurogenesis" evidence=IEA] [GO:0071285
"cellular response to lithium ion" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IDA;IMP;NAS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IDA;TAS] [GO:0016874 "ligase
activity" evidence=IDA] [GO:0032807 "DNA ligase IV complex"
evidence=IDA] [GO:0010165 "response to X-ray" evidence=IDA]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0051351
"positive regulation of ligase activity" evidence=IDA] [GO:0051103
"DNA ligation involved in DNA repair" evidence=IDA] [GO:0070419
"nonhomologous end joining complex" evidence=IDA] [GO:0005958
"DNA-dependent protein kinase-DNA ligase 4 complex" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
Reactome:REACT_216 InterPro:IPR009089 InterPro:IPR010585
InterPro:IPR014751 Pfam:PF06632 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0016032 GO:GO:0001701 GO:GO:0007417
GO:GO:0043524 GO:GO:0010332 GO:GO:0050769 EMBL:CH471084
GO:GO:0033077 GO:GO:0045190 GO:GO:0048146 GO:GO:0010165
GO:GO:0005958 GO:GO:0006303 GO:GO:0071285 GO:GO:0051103
GO:GO:0032807 PDB:1IK9 PDB:3II6 PDBsum:1IK9 PDBsum:3II6
GO:GO:0033152 GO:GO:0002328 GO:GO:0051351 Gene3D:1.20.5.370
Gene3D:2.170.210.10 PDB:3Q4F PDB:3RWR PDB:3SR2 PDB:3W03 PDBsum:3Q4F
PDBsum:3RWR PDBsum:3SR2 PDBsum:3W03 PDB:3MUD PDBsum:3MUD KO:K10886
EMBL:U40622 EMBL:AF055285 EMBL:AF055279 EMBL:AF055280 EMBL:AF055281
EMBL:AF055282 EMBL:AF055283 EMBL:AF055284 EMBL:AB017445
EMBL:BT007216 EMBL:AK290739 EMBL:AY940097 EMBL:BC005259
EMBL:BC016314 IPI:IPI00007672 IPI:IPI00019678 IPI:IPI00401064
RefSeq:NP_003392.1 RefSeq:NP_071801.1 RefSeq:NP_072044.1
UniGene:Hs.567359 PDB:1FU1 PDBsum:1FU1 DisProt:DP00152
ProteinModelPortal:Q13426 SMR:Q13426 DIP:DIP-37957N IntAct:Q13426
MINT:MINT-1205583 STRING:Q13426 PhosphoSite:Q13426 DMDM:44888352
PaxDb:Q13426 PRIDE:Q13426 DNASU:7518 Ensembl:ENST00000282268
Ensembl:ENST00000338635 Ensembl:ENST00000396027
Ensembl:ENST00000511817 GeneID:7518 KEGG:hsa:7518 UCSC:uc003kia.1
UCSC:uc003kib.3 UCSC:uc003kic.3 CTD:7518 GeneCards:GC05P082409
HGNC:HGNC:12831 HPA:HPA006801 MIM:194363 neXtProt:NX_Q13426
PharmGKB:PA37423 eggNOG:NOG69713 HOGENOM:HOG000013067
HOVERGEN:HBG059517 InParanoid:Q13426 OMA:LETDLYK OrthoDB:EOG48WC3N
PhylomeDB:Q13426 EvolutionaryTrace:Q13426 GenomeRNAi:7518
NextBio:29423 PMAP-CutDB:Q13426 ArrayExpress:Q13426 Bgee:Q13426
CleanEx:HS_XRCC4 Genevestigator:Q13426 GermOnline:ENSG00000152422
SUPFAM:SSF50809 Uniprot:Q13426
Length = 336
Score = 81 (33.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 38/140 (27%), Positives = 66/140 (47%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKV--PAGILDFLMDANIR 133
P VY F + + C + FEK + +R G N +KV PA ++ L+ +
Sbjct: 79 GPADVYTFNFSKESCY---FFFEKNLKDVSFR--LGSF-NLEKVENPAEVIRELICYCLD 132
Query: 134 LSAEKCLAQSERFK--NEKL 151
AE A++E + NE+L
Sbjct: 133 TIAEN-QAKNEHLQKENERL 151
Score = 75 (31.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 144 ERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKL--SKQAVMGDLQQXXXXXXXXXXX 201
E+ + K E+ +Y +F+ VLN KK+K+R L +KL + Q D++Q
Sbjct: 163 EKCVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIKQEGETAICSEMT 222
Query: 202 XXXXXXXXKSEEEPAKDITSTS 223
+S +E +++ T S
Sbjct: 223 ADRDPVYDESTDEESENQTDLS 244
>UNIPROTKB|F1REZ3 [details] [associations]
symbol:XRCC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051351 "positive regulation of ligase activity"
evidence=IEA] [GO:0051103 "DNA ligation involved in DNA repair"
evidence=IEA] [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] [GO:0048146 "positive regulation of fibroblast
proliferation" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0033152 "immunoglobulin V(D)J
recombination" evidence=IEA] [GO:0033077 "T cell differentiation in
thymus" evidence=IEA] [GO:0032807 "DNA ligase IV complex"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007417
"central nervous system development" evidence=IEA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IEA] [GO:0005958 "DNA-dependent protein kinase-DNA ligase
4 complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0002328 "pro-B cell differentiation" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR009089 InterPro:IPR010585
InterPro:IPR014751 Pfam:PF06632 GO:GO:0005829 GO:GO:0003677
GO:GO:0001701 GO:GO:0007417 GO:GO:0043524 GO:GO:0010332
GO:GO:0050769 GO:GO:0033077 GO:GO:0045190 GO:GO:0048146
GO:GO:0010165 GO:GO:0005958 GO:GO:0006303 GO:GO:0051103
GO:GO:0032807 GO:GO:0033152 GO:GO:0002328 GO:GO:0051351
Gene3D:1.20.5.370 Gene3D:2.170.210.10 OMA:LETDLYK SUPFAM:SSF50809
GeneTree:ENSGT00390000017079 EMBL:AEMK01178311 EMBL:CU462925
EMBL:CU856406 Ensembl:ENSSSCT00000015439 Uniprot:F1REZ3
Length = 246
Score = 82 (33.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 37/140 (26%), Positives = 68/140 (48%)
Query: 20 FVKGTWFQ---SHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W + S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWIGTVSESEISQEADDMALEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKV--PAGILDFLMDANIR 133
P Y F + D C+ ++FEK + +R G N +KV PA ++ L+ +
Sbjct: 79 GPTDTYKFNFSKDSCQ---FSFEKNLKDVSFR--LGSF-NLEKVANPAEVIRELICYCLD 132
Query: 134 LSAEKCLAQSERFK--NEKL 151
+EK A++E + NE+L
Sbjct: 133 TISEK-QAKNEHLQKENERL 151
Score = 65 (27.9 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 144 ERFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQDKLSK 181
ERF+ + K E+ +Y +F+ VLN KK+K+R L L++
Sbjct: 160 ERFEKCVSAKEAVETDLYKRFILVLNEKKAKIRSLYKLLNE 200
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 221 0.00095 112 3 11 22 0.40 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 4
No. of states in DFA: 618 (66 KB)
Total size of DFA: 192 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 18.43u 0.13s 18.56t Elapsed: 00:00:01
Total cpu time: 18.43u 0.13s 18.56t Elapsed: 00:00:02
Start: Fri May 10 14:03:46 2013 End: Fri May 10 14:03:48 2013