BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047048
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359477612|ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
Length = 259
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/251 (65%), Positives = 203/251 (80%), Gaps = 16/251 (6%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +CLKL+IP+ ++PIF+K TWF SHF LSITDGL+AWLCNASE++V++RAA WDQPV++
Sbjct: 6 RHSCLKLQIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSD 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
YI LAER+LGFQQPG VYGF+DA DG +RLSWTFEKEGTKLEWRWKCG +P+S+ AG+
Sbjct: 66 YIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGV 125
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLM+ANIRLS AEKCLAQSE+F NEK EFESAIYAKFLGVLNS
Sbjct: 126 LDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNS 185
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KK+KLREL+D++SK+ G L QEE+ESTD+T SFD+ +D++ EEE +K++T TS V
Sbjct: 186 KKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVS 245
Query: 228 ASRARGRKRIS 238
SR RGRKR++
Sbjct: 246 TSRPRGRKRVA 256
>gi|297737175|emb|CBI26376.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 165/251 (65%), Positives = 203/251 (80%), Gaps = 16/251 (6%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +CLKL+IP+ ++PIF+K TWF SHF LSITDGL+AWLCNASE++V++RAA WDQPV++
Sbjct: 6 RHSCLKLQIPNQSEPIFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQPVSD 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
YI LAER+LGFQQPG VYGF+DA DG +RLSWTFEKEGTKLEWRWKCG +P+S+ AG+
Sbjct: 66 YIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRSTTAGV 125
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLM+ANIRLS AEKCLAQSE+F NEK EFESAIYAKFLGVLNS
Sbjct: 126 LDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLGVLNS 185
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KK+KLREL+D++SK+ G L QEE+ESTD+T SFD+ +D++ EEE +K++T TS V
Sbjct: 186 KKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTSKHVS 245
Query: 228 ASRARGRKRIS 238
SR RGRKR++
Sbjct: 246 TSRPRGRKRVA 256
>gi|255551927|ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4, putative [Ricinus communis]
Length = 265
Score = 343 bits (881), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 175/255 (68%), Positives = 198/255 (77%), Gaps = 21/255 (8%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R TCLKLEI T+PIFVKGTWF SHF LSITDGLNAW+CNA+E QVK+RAA WDQPV+E
Sbjct: 14 RHTCLKLEI---TEPIFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAAQWDQPVSE 70
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
YI LAE YLGFQQPG +Y F DA D KRLSWTFEKEGTKLEWRWKC P+P++K AGI
Sbjct: 71 YINLAEHYLGFQQPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSPDNKMTTAGI 130
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLMDANIRLS A+KCL QSERF EK EFES+IYAKFL VLNS
Sbjct: 131 LDFLMDANIRLSEEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIYAKFLAVLNS 190
Query: 168 KKSKLRELQDKLSKQAVMGDL-QQEEEESTDETESFDE-GTDDDKSEEEPAKDITSTSIG 225
KK KLR+L+D+LSK+ G L Q+EEEESTD+TESF+E +D DKSEEEP + +T TS
Sbjct: 191 KKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPPEKVTGTSED 250
Query: 226 VPASRARGRKRISRK 240
P+SR RGRKRI+RK
Sbjct: 251 KPSSRGRGRKRITRK 265
>gi|112982631|dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
Length = 255
Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 159/253 (62%), Positives = 194/253 (76%), Gaps = 20/253 (7%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R TCLKLEIP +PIF+KGTWF HF+LSITDGLN+W CNA+EE+V+ RAA WDQPV+
Sbjct: 7 RHTCLKLEIP---EPIFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRGRAAQWDQPVST 63
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
YI+LAE++LGFQ PG VY FTDA +G KRLSWTFEKEGTKLEWRWKC P+P++KK I
Sbjct: 64 YIQLAEKHLGFQIPGSVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLI 123
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLMDANIRLS AEKCLAQSE+F ++K+EFE+A+YAKFLGVLNS
Sbjct: 124 LDFLMDANIRLSEEVVRKTQSFERLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNS 183
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KK KLREL+D+LSK+ + G+ QE E+S D+TESFD G+DD+KS E+P + + TS P
Sbjct: 184 KKRKLRELRDQLSKKEISGESAQEGEDS-DKTESFDRGSDDEKSVEKPREKLAGTSKDPP 242
Query: 228 ASRARGRKRISRK 240
R RK+I+ K
Sbjct: 243 PRRGYVRKKITHK 255
>gi|224111038|ref|XP_002315726.1| predicted protein [Populus trichocarpa]
gi|222864766|gb|EEF01897.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 312 bits (799), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 153/228 (67%), Positives = 184/228 (80%), Gaps = 20/228 (8%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R TCLKLEIP +PIF+KGTWF HF+LSITDGLN+W CNA+EE+V+DRAA WDQPV+
Sbjct: 7 RHTCLKLEIP---EPIFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRDRAAQWDQPVST 63
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
YI+LAE++LGFQ PG VY FTDA +G KRLSWTFEKEGTKLEWRWKC P+P++KK I
Sbjct: 64 YIQLAEKHLGFQIPGSVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTTLI 123
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLMDANIRLS AEKCLAQSE+F ++K+EFE+A+YAKFLGVLNS
Sbjct: 124 LDFLMDANIRLSEEVVRKTQSFEQLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVLNS 183
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEP 215
KK KLREL+D+LSK+ + G+ QEEE+S D+TESFD G+DD+KS E+P
Sbjct: 184 KKRKLRELRDQLSKKEISGESAQEEEDS-DKTESFDRGSDDEKSVEKP 230
>gi|22331270|ref|NP_188951.2| DNA repair protein XRCC4 [Arabidopsis thaliana]
gi|238479872|ref|NP_001154639.1| DNA repair protein XRCC4 [Arabidopsis thaliana]
gi|85701292|sp|Q682V0.2|XRCC4_ARATH RecName: Full=DNA repair protein XRCC4
gi|9800643|gb|AAF91285.2|AF233528_1 putative double strand break repair protein [Arabidopsis thaliana]
gi|9294200|dbj|BAB02102.1| unnamed protein product [Arabidopsis thaliana]
gi|332643196|gb|AEE76717.1| DNA repair protein XRCC4 [Arabidopsis thaliana]
gi|332643197|gb|AEE76718.1| DNA repair protein XRCC4 [Arabidopsis thaliana]
Length = 264
Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/254 (60%), Positives = 187/254 (73%), Gaps = 30/254 (11%)
Query: 3 TRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVT 62
T+ TCL+LEI A DPIFVKGTW S FD+S+TDG ++W+CNA+EE+V +RAA WDQPV+
Sbjct: 23 TKHTCLRLEISGA-DPIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWDQPVS 81
Query: 63 EYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAG 122
EY+KLAE+YLGFQQP VY F+DA +G KRLSWTFEKEGTKLEWRWKC P+ +SKK+ G
Sbjct: 82 EYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKITVG 141
Query: 123 ILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLN 166
ILDFLM+ANIRLS AE+CLAQ E+ +EK EFESA YAKFL VLN
Sbjct: 142 ILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVLN 201
Query: 167 SKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEG-TDDDKSEEEPAKDITSTSIG 225
+KK+KLR L+DK V+ EEEESTD+ ESF+ G +DD+KSEEE +K TS
Sbjct: 202 AKKAKLRALRDKEDSVRVV-----EEEESTDKAESFESGRSDDEKSEEEASKKATS---- 252
Query: 226 VPASRARGRKRISR 239
S+ARG KR +R
Sbjct: 253 ---SKARGGKRAAR 263
>gi|51968676|dbj|BAD43030.1| putative double strand break repair protein (XRCC4) [Arabidopsis
thaliana]
gi|56461768|gb|AAV91340.1| At1g61410 [Arabidopsis thaliana]
gi|61656135|gb|AAX49370.1| At1g61410 [Arabidopsis thaliana]
Length = 248
Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 154/254 (60%), Positives = 187/254 (73%), Gaps = 30/254 (11%)
Query: 3 TRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVT 62
T+ TCL+LEI A DPIFVKGTW S FD+S+TDG ++W+CNA+EE+V +RAA WDQPV+
Sbjct: 7 TKHTCLRLEISGA-DPIFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWDQPVS 65
Query: 63 EYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAG 122
EY+KLAE+YLGFQQP VY F+DA +G KRLSWTFEKEGTKLEWRWKC P+ +SKK+ G
Sbjct: 66 EYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKITVG 125
Query: 123 ILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLN 166
ILDFLM+ANIRLS AE+CLAQ E+ +EK EFESA YAKFL VLN
Sbjct: 126 ILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFLSVLN 185
Query: 167 SKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEG-TDDDKSEEEPAKDITSTSIG 225
+KK+KLR L+DK V+ EEEESTD+ ESF+ G +DD+KSEEE +K TS
Sbjct: 186 AKKAKLRALRDKEDSVRVV-----EEEESTDKAESFESGRSDDEKSEEEASKKATS---- 236
Query: 226 VPASRARGRKRISR 239
S+ARG KR +R
Sbjct: 237 ---SKARGGKRAAR 247
>gi|357441033|ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
gi|355479842|gb|AES61045.1| DNA repair protein XRCC4 [Medicago truncatula]
Length = 256
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 154/252 (61%), Positives = 182/252 (72%), Gaps = 19/252 (7%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R TCLKL++ + IFVKGTWF +HF+LSITDG +W CNASE++VK RAA WDQPV E
Sbjct: 6 RHTCLKLQLTEE-ESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAAQWDQPVEE 64
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
Y++L+ERYLGFQQP VY F DA D KRLSWTFEK G L WRWKC +P+ KK A I
Sbjct: 65 YVELSERYLGFQQPESVYAFADAGDAHKRLSWTFEKGGMTLHWRWKCMKSPDCKKTTAEI 124
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLMDANIRLS AEKCLAQSER NE++EFES IY KFLGVLNS
Sbjct: 125 LDFLMDANIRLSEEVVIKTELFEKTKVEAEKCLAQSERIANERVEFESQIYTKFLGVLNS 184
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KK+KLREL+D+LSKQ GD +EEE ++TESFDE +DD KS+E+P K ITS+S
Sbjct: 185 KKAKLRELRDQLSKQG-NGDKSPQEEEDPEKTESFDEESDDGKSDEDPQKCITSSSKDAG 243
Query: 228 ASRARGRKRISR 239
A++ R R R +R
Sbjct: 244 ATK-RSRPRRTR 254
>gi|297831034|ref|XP_002883399.1| hypothetical protein ARALYDRAFT_479818 [Arabidopsis lyrata subsp.
lyrata]
gi|297329239|gb|EFH59658.1| hypothetical protein ARALYDRAFT_479818 [Arabidopsis lyrata subsp.
lyrata]
Length = 248
Score = 283 bits (723), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 151/254 (59%), Positives = 184/254 (72%), Gaps = 30/254 (11%)
Query: 3 TRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVT 62
T+ TCL+LEI A DPIFVKGTW SHFD+S+TDG ++W+CNA+EE+V +RAA WDQPV+
Sbjct: 7 TKHTCLRLEISGA-DPIFVKGTWHNSHFDISVTDGSSSWICNATEEEVAERAAQWDQPVS 65
Query: 63 EYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAG 122
EY++LAERYLGFQQP VYGF+DA +G KRLSWTFEKEGTKLEWRWKC P+ +SKK+ G
Sbjct: 66 EYLELAERYLGFQQPNSVYGFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSHDSKKITVG 125
Query: 123 ILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLN 166
ILDFL++ANIRLS AE+CLAQ E+ EK EFE+A YAKFL VLN
Sbjct: 126 ILDFLLEANIRLSEEVVNKTRSFEKMKCEAERCLAQGEKLCEEKTEFENATYAKFLSVLN 185
Query: 167 SKKSKLRELQDKL-SKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KK+KLR L+DK S +AV EEEESTD+TESFD G D++ + S
Sbjct: 186 AKKAKLRALRDKGDSVRAV------EEEESTDKTESFDSGRSDNE------QSEEEASKK 233
Query: 226 VPASRARGRKRISR 239
+S+ARGRKR R
Sbjct: 234 ASSSKARGRKRAVR 247
>gi|356576495|ref|XP_003556366.1| PREDICTED: DNA repair protein XRCC4-like [Glycine max]
Length = 256
Score = 282 bits (722), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/253 (59%), Positives = 175/253 (69%), Gaps = 19/253 (7%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +C KL IP +PIFVK TWF +HF L++TDG+ AW C+ S E+VK RAA WD PV+E
Sbjct: 7 RFSCSKLLIPKG-EPIFVKATWFPTHFHLAVTDGITAWHCHPSAEEVKQRAAQWDLPVSE 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
Y+ L+ERYLG QQPG VY F DA D KRLSWTFEKEG L WRWKC +P+SKK I
Sbjct: 66 YLNLSERYLGLQQPGSVYAFDDAGDSHKRLSWTFEKEGMTLLWRWKCLLSPDSKKSNVEI 125
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLM +NI LS AEKCL QSER NE+LEFES IYAKFLGVLNS
Sbjct: 126 LDFLMGSNINLSDKVVTENELFEKMKVEAEKCLTQSERIANERLEFESEIYAKFLGVLNS 185
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KKSKLR L+DKLSKQ + EEE TD+TESFDE D ++S+E+P KDITS+S V
Sbjct: 186 KKSKLRVLRDKLSKQE--NSEKSPEEEDTDKTESFDEENDFERSDEDPQKDITSSSKEVM 243
Query: 228 ASRARGRKRISRK 240
A++ KRI K
Sbjct: 244 ANKPSHPKRIRHK 256
>gi|356535394|ref|XP_003536230.1| PREDICTED: DNA repair protein XRCC4-like [Glycine max]
Length = 256
Score = 282 bits (722), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 149/253 (58%), Positives = 177/253 (69%), Gaps = 19/253 (7%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +C KL +P +PIFVK TWF +HF L++TDG+ AW C+ SEE+VK RAA WD PV+E
Sbjct: 7 RFSCSKLLVPKG-EPIFVKATWFPTHFHLAVTDGITAWHCHPSEEEVKQRAAQWDLPVSE 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
Y+ L+ERYLG QQPG VY DA DG KRLSWTFEKEG L WRWKC +P+SKK I
Sbjct: 66 YLNLSERYLGLQQPGSVYALDDAGDGHKRLSWTFEKEGMTLLWRWKCLLSPDSKKSNVEI 125
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLM +NI LS AEKCL QSER NE+LEFES IYAKFLGVLNS
Sbjct: 126 LDFLMGSNINLSDKVVRENELFEKMKVEAEKCLTQSERIANERLEFESEIYAKFLGVLNS 185
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KKSKLREL+DKL+K + EEE TD+TESFDE +D D+S+E+P KDI+S+S V
Sbjct: 186 KKSKLRELRDKLAKPE--NTEKSPEEEDTDKTESFDEESDFDRSDEDPQKDISSSSKDVM 243
Query: 228 ASRARGRKRISRK 240
A++ KR RK
Sbjct: 244 ANKPSCPKRTRRK 256
>gi|255646933|gb|ACU23936.1| unknown [Glycine max]
Length = 256
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/253 (58%), Positives = 177/253 (69%), Gaps = 19/253 (7%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +C KL +P +PIFVK TWF +HF L++TDG+ AW C+ SEE+VK RAA WD PV+E
Sbjct: 7 RFSCSKLLVPKG-EPIFVKATWFPTHFHLAVTDGITAWHCHPSEEEVKQRAAQWDLPVSE 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
Y+ L+ERYLG QQPG VY DA DG KRLSWTFEKEG L WRWKC +P+SKK I
Sbjct: 66 YLNLSERYLGLQQPGSVYALDDAGDGHKRLSWTFEKEGMTLFWRWKCLLSPDSKKSNVEI 125
Query: 124 LDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
LDFLM +NI LS AEKCL QSER NE+LEFES IYAKFLGVLNS
Sbjct: 126 LDFLMGSNINLSDKVVRENELFEKMKVEAEKCLTQSERIANERLEFESEIYAKFLGVLNS 185
Query: 168 KKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
KKSKLREL+DKL+K + EEE TD+TESFDE +D D+S+E+P KDI+S+S V
Sbjct: 186 KKSKLRELRDKLAKPE--NTEKSPEEEDTDKTESFDEESDFDRSDEDPQKDISSSSKDVM 243
Query: 228 ASRARGRKRISRK 240
A++ KR RK
Sbjct: 244 ANKPSCPKRTRRK 256
>gi|449438209|ref|XP_004136882.1| PREDICTED: DNA repair protein XRCC4-like [Cucumis sativus]
gi|449478860|ref|XP_004155437.1| PREDICTED: DNA repair protein XRCC4-like [Cucumis sativus]
Length = 233
Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 169/229 (73%), Gaps = 21/229 (9%)
Query: 4 RQTCLKLEIPHATDP-----IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWD 58
R TCLKLE+P P IFVKGTW FDLSITDG +AW C+A+E++V+ RAA WD
Sbjct: 5 RHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRAAQWD 64
Query: 59 QPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKK 118
Q ++Y+ LAERYLGFQQPG +Y F DA +G KRLSWTF+KEG KLEWRWKC PA ++K
Sbjct: 65 QEPSDYVALAERYLGFQQPGSIYDFADAGNGYKRLSWTFDKEGMKLEWRWKCQPASDNKT 124
Query: 119 VPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFL 162
AGIL+FLMDANIRLS +EKCLAQSE+ +EK+EFE+AIYAKFL
Sbjct: 125 TTAGILNFLMDANIRLSEEVVRKNQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFL 184
Query: 163 GVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKS 211
VLN+KK+KLRE +D+LS+Q + G ++EE S+D+TESFD+ +D +K+
Sbjct: 185 NVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233
>gi|294461661|gb|ADE76390.1| unknown [Picea sitchensis]
Length = 334
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/214 (56%), Positives = 149/214 (69%), Gaps = 22/214 (10%)
Query: 6 TCLKLEIPHAT-DPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEY 64
TC+++E A D I+VK TWF +HF LSITDGL+AW+C+ SE+ V DRA+ WDQ V+EY
Sbjct: 7 TCVRIEANGANRDVIYVKSTWFPTHFSLSITDGLHAWICDGSEKNVADRASQWDQSVSEY 66
Query: 65 IKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGIL 124
++ A+RYL +QQPG Y DA +G RLSWT EK+GTKLEWRWKC APN +KV + IL
Sbjct: 67 LEDAQRYLSYQQPGSAYTIKDAGNGSIRLSWTLEKQGTKLEWRWKCDKAPNEQKVISDIL 126
Query: 125 DFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNSK 168
DFLMDAN RLS AEKCLAQSE+FKNEK EFE+ I+AKF+ VLNSK
Sbjct: 127 DFLMDANTRLSEEVVRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETTIFAKFVAVLNSK 186
Query: 169 KSKLRELQDKL-----SKQAVMGDLQQEEEESTD 197
K+KLREL++K +K+ V D EE TD
Sbjct: 187 KAKLRELREKCLHSEPAKKNVREDASDFSEEETD 220
>gi|242038179|ref|XP_002466484.1| hypothetical protein SORBIDRAFT_01g008590 [Sorghum bicolor]
gi|241920338|gb|EER93482.1| hypothetical protein SORBIDRAFT_01g008590 [Sorghum bicolor]
Length = 283
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/245 (50%), Positives = 162/245 (66%), Gaps = 32/245 (13%)
Query: 4 RQTCLKLEIPHATDP---------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRA 54
R +C KL +P DP +FVK TW S F L++TDG AW+ +AS+ +V+ RA
Sbjct: 11 RHSCAKLSVP-VEDPKAVAAGAGTVFVKATWLPSRFSLAVTDGAGAWVADASDHEVRLRA 69
Query: 55 ALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAP 114
WDQPVT+Y+ LAERYL FQQP Y F DA G +RLSWTFE++GTKLEWRWK P+P
Sbjct: 70 EQWDQPVTDYLALAERYLAFQQPDSTYSFHDAGKGNRRLSWTFERQGTKLEWRWKLQPSP 129
Query: 115 NSKKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIY 158
N+++ + ILDFLMDANIRLS AEKCL QSERF NEK EFE A +
Sbjct: 130 NTQQTISEILDFLMDANIRLSEEVVRKTQSFDKLKQEAEKCLQQSERFNNEKTEFEQATF 189
Query: 159 AKFLGVLNSKKSKLRELQDKLSKQAVMG-----DLQQEEEESTDETESFDEGTDDDKS-E 212
+KF+ VLNSKK+KLR+L+DK+ + G +++Q+EE STD TE F+ +D + S
Sbjct: 190 SKFVAVLNSKKAKLRQLRDKVVELESAGKPPKEEVEQQEENSTDRTELFEGESDKEASIN 249
Query: 213 EEPAK 217
+EP++
Sbjct: 250 DEPSE 254
>gi|357116272|ref|XP_003559906.1| PREDICTED: DNA repair protein XRCC4-like [Brachypodium distachyon]
Length = 276
Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 124/239 (51%), Positives = 157/239 (65%), Gaps = 26/239 (10%)
Query: 4 RQTCLKLEIPHATDP-------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAAL 56
R +C KL + DP IFVK TW + F L++TDG AW+ +ASE +V+ RA
Sbjct: 9 RHSCAKLSV-AVEDPKAAGGGAIFVKATWLPTRFSLAVTDGAGAWVADASEAEVRLRAEQ 67
Query: 57 WDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNS 116
WDQPV++Y+ LAERYL FQQP Y F DA G +RLSWTFE++GTKLEWRWK PAP +
Sbjct: 68 WDQPVSDYLSLAERYLAFQQPSSTYSFHDAGKGNRRLSWTFERQGTKLEWRWKLQPAPQT 127
Query: 117 KKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAK 160
++ A +LDFLMDANIRLS A+KCL QSERF NEK EFE A + K
Sbjct: 128 QQTIAEVLDFLMDANIRLSEEVVRKTQSFDKLKEEADKCLQQSERFNNEKAEFEEATFTK 187
Query: 161 FLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEE-STDETESFDEGTDDDKS-EEEPAK 217
F+ V+NSKK+KLR+L+DK S +E+EE STD TE F+EG+D D S +EP++
Sbjct: 188 FVAVINSKKAKLRQLKDKFSALESSDKAPKEDEENSTDRTEPFEEGSDKDPSINDEPSE 246
>gi|115455239|ref|NP_001051220.1| Os03g0740800 [Oryza sativa Japonica Group]
gi|31126770|gb|AAP44689.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539032|gb|AAR87289.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108710997|gb|ABF98792.1| double strand break repair protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549691|dbj|BAF13134.1| Os03g0740800 [Oryza sativa Japonica Group]
gi|125545669|gb|EAY91808.1| hypothetical protein OsI_13450 [Oryza sativa Indica Group]
gi|215701262|dbj|BAG92686.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 274
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/239 (51%), Positives = 162/239 (67%), Gaps = 26/239 (10%)
Query: 4 RQTCLKLEIPHATDP-------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAAL 56
R +C KL + DP +FVK TW + F L++TDG AW+ AS+ +V+ RA
Sbjct: 9 RHSCAKLSVA-VEDPKAGGGGAVFVKATWHPTRFSLAVTDGGAAWVAQASDAEVRLRAEQ 67
Query: 57 WDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNS 116
WDQPV +Y+ LAERYL FQQP Y F DAA+G +RLSWTFEK+GTKLEWRWK PAPN+
Sbjct: 68 WDQPVADYLALAERYLAFQQPSSTYSFHDAANGNRRLSWTFEKQGTKLEWRWKLQPAPNT 127
Query: 117 KKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAK 160
++ A ILDFLMDANIRLS +EKCL QSERF EK EFE + ++K
Sbjct: 128 QQTIAEILDFLMDANIRLSEEVVRKTQSFDKLKQESEKCLQQSERFNIEKAEFEQSTFSK 187
Query: 161 FLGVLNSKKSKLRELQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKS-EEEPAK 217
F+ VLNSKK+KLR+L+DKL++ ++ ++E+E STD+TE F+E +D D S +EP++
Sbjct: 188 FVAVLNSKKAKLRQLKDKLTEFESADKAPKEEDENSTDKTELFEEASDKDASVNDEPSE 246
>gi|125587866|gb|EAZ28530.1| hypothetical protein OsJ_12511 [Oryza sativa Japonica Group]
Length = 274
Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 123/239 (51%), Positives = 161/239 (67%), Gaps = 26/239 (10%)
Query: 4 RQTCLKLEIPHATDP-------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAAL 56
R +C KL + DP +FVK TW + F L +TDG AW+ AS+ +V+ RA
Sbjct: 9 RHSCAKLSVA-VEDPKAGGGGAVFVKATWHPTRFSLGVTDGGAAWVAQASDAEVRLRAEQ 67
Query: 57 WDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNS 116
WDQPV +Y+ LAERYL FQQP Y F DAA+G +RLSWTFEK+GTKLEWRWK PAPN+
Sbjct: 68 WDQPVADYLALAERYLAFQQPSSTYSFHDAANGNRRLSWTFEKQGTKLEWRWKLQPAPNT 127
Query: 117 KKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAK 160
++ A ILDFLMDANIRLS +EKCL QSERF EK EFE + ++K
Sbjct: 128 QQTIAEILDFLMDANIRLSEEVVRKTQSFDKLKQESEKCLQQSERFNIEKAEFEQSTFSK 187
Query: 161 FLGVLNSKKSKLRELQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKS-EEEPAK 217
F+ VLNSKK+KLR+L+DKL++ ++ ++E+E STD+TE F+E +D D S +EP++
Sbjct: 188 FVAVLNSKKAKLRQLKDKLTEFESADKAPKEEDENSTDKTELFEEASDKDASVNDEPSE 246
>gi|226504508|ref|NP_001142226.1| uncharacterized protein LOC100274394 [Zea mays]
gi|194707700|gb|ACF87934.1| unknown [Zea mays]
gi|195612486|gb|ACG28073.1| double strand break repair protein [Zea mays]
Length = 290
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 130/263 (49%), Positives = 165/263 (62%), Gaps = 42/263 (15%)
Query: 4 RQTCLKLEIPHATDP---------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRA 54
R +C KL +P DP +FVK TW S F L++TDG AW+ +AS+ +V+ RA
Sbjct: 11 RHSCAKLSVP-VEDPKAVTAGGGTVFVKATWLPSRFSLAVTDGAGAWVADASDHEVRLRA 69
Query: 55 ALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAP 114
WDQPV +YI LAERYL FQQPG Y F DA G +RL+WTFE++GTKLEWRWK P+P
Sbjct: 70 EQWDQPVADYIALAERYLAFQQPGSTYSFHDAGKGQRRLAWTFERQGTKLEWRWKLQPSP 129
Query: 115 NSKKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIY 158
N+++ + ILDFLMDANIRLS AEKCL QSERF NEK EFE A +
Sbjct: 130 NTQQTISEILDFLMDANIRLSEEVVRKTQSFDKLKQEAEKCLQQSERFNNEKAEFEQAAF 189
Query: 159 AKFLGVLNSKKSKLRELQDKL---------SKQAVMGDLQQEEEESTDETESFDEGTDDD 209
+KF+ VLNSKK+KLR+L+DK+ K+ + +QE+E STD TE F+ +D +
Sbjct: 190 SKFVAVLNSKKAKLRQLRDKVVELESAVKPPKEEAGQEQEQEQENSTDRTELFEAESDKE 249
Query: 210 KSEEEPAKDITSTSIG---VPAS 229
S AKD S+ G VP S
Sbjct: 250 AS----AKDEHSSETGSGNVPTS 268
>gi|414872702|tpg|DAA51259.1| TPA: double strand break repair protein [Zea mays]
Length = 290
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 166/263 (63%), Gaps = 42/263 (15%)
Query: 4 RQTCLKLEIPHATDP---------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRA 54
R +C KL +P DP +FVK TW S F L++TDG AW+ +AS+ +V+ RA
Sbjct: 11 RHSCAKLSVP-VEDPKAVTAGGGTVFVKATWLPSRFSLAVTDGAGAWVADASDHEVRLRA 69
Query: 55 ALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAP 114
WDQPV +YI LAERYL FQQPG Y F DA G +RL+WTFE++GTKLEWRWK P+P
Sbjct: 70 EQWDQPVADYIALAERYLAFQQPGSTYSFHDAGKGQRRLAWTFERQGTKLEWRWKLQPSP 129
Query: 115 NSKKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIY 158
N+++ + ILDFLMDANIRLS AEKCL QSERF NEK EFE A +
Sbjct: 130 NTQQTISEILDFLMDANIRLSEEVVRKTQSFDKLKQEAEKCLQQSERFNNEKAEFEQAAF 189
Query: 159 AKFLGVLNSKKSKLRELQDKL---------SKQAVMGDLQQEEEESTDETESFDEGTDDD 209
+KF+ VLNSKK+KLR+L+DK+ K+ + ++EEE STD TE F EG +D
Sbjct: 190 SKFVAVLNSKKAKLRQLRDKVVELEPAVKPPKEEAGQEQEEEEENSTDRTELF-EGEND- 247
Query: 210 KSEEEPAKDITSTSIG---VPAS 229
+E AKD S G VP+S
Sbjct: 248 --KEASAKDEHSGETGSGNVPSS 268
>gi|326515332|dbj|BAK03579.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532976|dbj|BAJ89333.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 280
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/235 (50%), Positives = 151/235 (64%), Gaps = 29/235 (12%)
Query: 4 RQTCLKLEIPHATDP-------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAAL 56
R +C KL + DP IFVK TW + F L++TDG AW+ +AS+ +V+ RA
Sbjct: 9 RHSCAKLSVA-VEDPKAPGGGGIFVKATWLPTRFSLAVTDGAGAWVADASDAEVRLRAEQ 67
Query: 57 WDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNS 116
WDQPV+EY+ LAERYL F QP Y F +A G +RLSWTFEK+GTKLEWRWK PAP+
Sbjct: 68 WDQPVSEYLALAERYLAFHQPSSTYSFHEAGAG-RRLSWTFEKQGTKLEWRWKLQPAPHP 126
Query: 117 KKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAK 160
++ A +LDFLMDANIRLS AE CL QS+RF NEK EFE A + K
Sbjct: 127 QQTIAEVLDFLMDANIRLSEEVVRKTQSFEKLKQEAENCLQQSDRFNNEKAEFEQASFTK 186
Query: 161 FLGVLNSKKSKLRELQDKL----SKQAVMGDLQQEEEESTDETESFDEGTDDDKS 211
F+ VLNSKK+KLR+L+DK+ S + ++EE STD TE +EG+D D+S
Sbjct: 187 FVAVLNSKKAKLRQLKDKIAALESADKAPKEEEEEEGNSTDRTEPIEEGSDKDQS 241
>gi|3056589|gb|AAC13900.1|AAC13900 T1F9.10 [Arabidopsis thaliana]
Length = 222
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 160/255 (62%), Gaps = 58/255 (22%)
Query: 3 TRQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVT 62
T+ TCL LEI A DPIFVKGTW+ S FD+S+TDG W CNA+EE+
Sbjct: 7 TKHTCLHLEISGA-DPIFVKGTWYHSRFDISVTDGSFTWTCNATEEE------------- 52
Query: 63 EYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAG 122
QP VYGF+DA +G KRLSWTFEKEGTKLEWRWKC P+ +SKK+
Sbjct: 53 -------------QPNSVYGFSDAIEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKKITVR 99
Query: 123 ILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLN 166
ILDFLM+ANIRLS AE+CLAQ E+ +EK EFE+A YAKFL VLN
Sbjct: 100 ILDFLMEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLN 159
Query: 167 SKKSKLRELQDKL-SKQAVMGDLQQEEEESTDETESFDEG-TDDDKSEEEPAKDITSTSI 224
+KK+KLR ++DK S +AV EEEEST + ESF+ G +DD++S EE ++ TS
Sbjct: 160 AKKAKLRAVRDKEDSVRAV------EEEESTYKAESFESGRSDDEQSGEEASEKATS--- 210
Query: 225 GVPASRARGRKRISR 239
S+ARG KR +R
Sbjct: 211 ----SKARGGKRAAR 221
>gi|339518935|gb|AEJ83861.1| X-ray repair cross-complementing 4 [Triticum aestivum]
Length = 279
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/245 (48%), Positives = 153/245 (62%), Gaps = 33/245 (13%)
Query: 4 RQTCLKLEIPHATDP-------IFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAAL 56
R +C KL + DP IFVK TW + F L++TDG AW+ +AS+ +V+ RA
Sbjct: 6 RHSCAKLSVA-VEDPKAPGGGGIFVKATWLPTRFSLAVTDGAGAWVADASDAEVRLRAEQ 64
Query: 57 WDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNS 116
WDQPV+EY+ LAERYL F QP Y F +A G +RLSWTFEK+GTKLEWRWK PAP+
Sbjct: 65 WDQPVSEYLALAERYLAFHQPSSTYSFHEAGAG-RRLSWTFEKQGTKLEWRWKLQPAPHP 123
Query: 117 KKVPAGILDFLMDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAK 160
++ A +LDFLMDANIRLS AE CL QSERF EK EFE A + K
Sbjct: 124 QQTIAEVLDFLMDANIRLSEEVVRKTQSFEKVKQEAENCLQQSERFNTEKAEFEQASFTK 183
Query: 161 FLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEE-------ESTDETESFDEGTDDDKS-E 212
F+ VLNSKK+KLR+L+D+++ +EEE STD TE +EG+D D S
Sbjct: 184 FVAVLNSKKAKLRQLKDRIAALESADKATKEEEEEEEEAGHSTDRTEPIEEGSDKDHSVN 243
Query: 213 EEPAK 217
+EP++
Sbjct: 244 DEPSE 248
>gi|225460384|ref|XP_002264931.1| PREDICTED: DNA repair protein XRCC4-like [Vitis vinifera]
Length = 166
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 96/109 (88%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R +CLKL+IP+ ++PIF+K TWF SHF LSITD L+ WLCNASE++V++RAA WDQPV++
Sbjct: 6 RHSCLKLQIPNQSEPIFIKATWFPSHFHLSITDSLHTWLCNASEDEVRERAAQWDQPVSD 65
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGP 112
YI LAER+LGFQQPG VYGF+DA DG +RL WTFEKEGTKLEWRWKCGP
Sbjct: 66 YIALAERFLGFQQPGSVYGFSDAGDGHRRLPWTFEKEGTKLEWRWKCGP 114
>gi|217073568|gb|ACJ85144.1| unknown [Medicago truncatula]
Length = 135
Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 93/123 (75%), Gaps = 1/123 (0%)
Query: 4 RQTCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTE 63
R TCLKL++ + IFVKGTWF +HF+LSITDG +W CNASE++VK RAA WDQPV E
Sbjct: 6 RHTCLKLQLT-EEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAAQWDQPVEE 64
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGI 123
Y++L+ERYLGFQQP VY F DA D KRLSWTFEK G L WRWKC +P+ KK A I
Sbjct: 65 YVELSERYLGFQQPESVYAFADAGDAHKRLSWTFEKGGMTLHWRWKCMKSPDCKKTTAEI 124
Query: 124 LDF 126
LDF
Sbjct: 125 LDF 127
>gi|374351666|gb|AEZ36034.1| X-ray cross complementing protein 4, partial [Nicotiana
benthamiana]
Length = 139
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 66/97 (68%), Gaps = 16/97 (16%)
Query: 82 GFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGILDFLMDANIRLS------ 135
GF DA G KRLSWTFEKEGTKLEWRWKC +PNSKK A ILDFLMDANIRLS
Sbjct: 1 GFDDAGSGHKRLSWTFEKEGTKLEWRWKCQLSPNSKKTTADILDFLMDANIRLSDEVVSK 60
Query: 136 ----------AEKCLAQSERFKNEKLEFESAIYAKFL 162
AEKCL QSE+ EK EFESAIYAK +
Sbjct: 61 TQSFERLREEAEKCLTQSEKLSKEKEEFESAIYAKVM 97
>gi|147774128|emb|CAN62863.1| hypothetical protein VITISV_030334 [Vitis vinifera]
Length = 1442
Score = 86.7 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 64 YIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR 107
YI LAER+LGFQQPG VYGF+DA DG +RL WTFEKEGTKLEWR
Sbjct: 1399 YIALAERFLGFQQPGSVYGFSDAGDGHRRLPWTFEKEGTKLEWR 1442
>gi|18407165|ref|NP_564776.1| DNA double-strand break repair and VJ recombination XRCC4 protein
[Arabidopsis thaliana]
gi|116325968|gb|ABJ98585.1| At1g61410 [Arabidopsis thaliana]
gi|332195712|gb|AEE33833.1| DNA double-strand break repair and VJ recombination XRCC4 protein
[Arabidopsis thaliana]
Length = 118
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 81/130 (62%), Gaps = 31/130 (23%)
Query: 128 MDANIRLS----------------AEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSK 171
M+ANIRLS AE+CLAQ E+ +EK EFE+A YAKFL VLN+KK+K
Sbjct: 1 MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60
Query: 172 LRELQDKL-SKQAVMGDLQQEEEESTDETESFDEG-TDDDKSEEEPAKDITSTSIGVPAS 229
LR ++DK S +AV EEEEST + ESF+ G +DD++S EE ++ TS S
Sbjct: 61 LRAVRDKEDSVRAV------EEEESTYKAESFESGRSDDEQSGEEASEKATS-------S 107
Query: 230 RARGRKRISR 239
+ARG KR +R
Sbjct: 108 KARGGKRAAR 117
>gi|168021056|ref|XP_001763058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685870|gb|EDQ72263.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 720
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 5 QTCLKLE------IPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWD 58
QTC++L H T + VKG W+ HF L++TDGLNAW + +E V RA
Sbjct: 7 QTCVQLHNVVKTGFAHHTSFLLVKGAWYPLHFTLAVTDGLNAWKIDGTEAFVIQRANDMK 66
Query: 59 QPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKK 118
+Y+ A +LG +Y +L T ++G L + K
Sbjct: 67 VTAGQYVDKAHLHLGHDDKSSLYSLHCLGSNGAQLLCT-PRDGRDLNMEFTINLP--MKA 123
Query: 119 VPAGILDFLMDANIRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLR 173
VP L F M + + + L +S+R K+ E A + + VL S+K++L+
Sbjct: 124 VPVLDLTFDMVQFLMQAYQDLLEKSDR-KSRTYERAKATIEQCVEVLQSQKAQLQ 177
>gi|168012196|ref|XP_001758788.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689925|gb|EDQ76294.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 374
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 43 CNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGT 102
C SE VK+RA WD+ ++ + YL QPG Y FT D ++LS+ + + +
Sbjct: 98 CEGSESFVKERAEAWDKKPRWVMEKIQFYLSVAQPGVNYRFTKIRDLHRKLSFDVQDKES 157
Query: 103 KLEWRWKCG--PAPNSKKVPAGILDFLMDANIRLS----------------AEKCLAQSE 144
L A + +++ +L+FL D+N RL+ +E + Q++
Sbjct: 158 DLYLTANLSMLSASDPERITCDLLEFLHDSNCRLTESFLKKCRDYDRLRSESEVLVEQNK 217
Query: 145 RFKNEKLEFESAIYAKFLGVLNSKK 169
RFK+ K + + +Y KF+ VLNSKK
Sbjct: 218 RFKDLKSQTQEVMYKKFVAVLNSKK 242
>gi|47228552|emb|CAG05372.1| unnamed protein product [Tetraodon nigroviridis]
Length = 326
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 38/254 (14%)
Query: 4 RQTCLK-LEIPHATDPIFV-------KGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAA 55
RQT ++ L +P D + +G F F+L +TDG NAW + SE V A
Sbjct: 2 RQTSVRSLHVPSEPDSSYFLRVDSGERGLGFG--FELLLTDGQNAWRGDVSEAAVCGEAE 59
Query: 56 LWDQPVTEYIKLAERYLGFQQPGCVYGFT---DAADGCKRLSWTFEKEGTKLEWRWKCGP 112
+ P YI+ ++ L + Y F+ D ++ +EK + +R
Sbjct: 60 ELEMPTERYIQDLQQVLTGAENSTNYSFSLTPSPPDSSSAVTLAYEKVQRDISFRLGSV- 118
Query: 113 APNSKKVPAGILDFLM------------------DANIRLSAE--KCLAQSERFKNEKLE 152
N+ PA + L+ + N RLS E + A+ + + ++K
Sbjct: 119 LLNAVPEPAEAVRQLLVHGLRRGNALERHNHKLEEENQRLSQEHQRITAELKHYADDKEA 178
Query: 153 FESAIYAKFLGVLNSKKSKLRELQDKL-SKQAVMGDLQQEEEES--TDETESFDEGTDDD 209
E+ +Y++F+ VLN KK+K+R LQ ++ S Q +Q+ ++S +D +E ++
Sbjct: 179 LETELYSRFVLVLNEKKAKIRSLQQRITSLQEARSSEKQKHQDSAKSDHSEGQEQDEYGG 238
Query: 210 KSEEEPAKDITSTS 223
++EEP D+ T+
Sbjct: 239 STDEEPG-DVQETA 251
>gi|168039451|ref|XP_001772211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676542|gb|EDQ63024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 437
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 13/139 (9%)
Query: 6 TCLKLEIPHATD------PIFVKGTW-----FQSHFDLSITDGLNAWLCNASEEQVKDRA 54
TC++LE+ D +FVK W + F L+I+DG AW SE VK RA
Sbjct: 178 TCIRLEVLEELDMSTVKRTLFVKSVWEPTRLSPTSFSLAISDGHRAWTFEGSETFVKKRA 237
Query: 55 ALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEW--RWKCGP 112
+WD+ V+ + + L QPG Y T D ++ S+ + T L +
Sbjct: 238 EVWDKNVSWVMDKLKLLLTVVQPGIAYHLTGMLDNHRKFSFEIQDMETNLSLTANFSLVD 297
Query: 113 APNSKKVPAGILDFLMDAN 131
A + + V +L FL+ N
Sbjct: 298 ASDPEIVTRDLLGFLLHGN 316
>gi|348503940|ref|XP_003439520.1| PREDICTED: DNA repair protein XRCC4-like [Oreochromis niloticus]
Length = 336
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 25/215 (11%)
Query: 22 KGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVY 81
+G F + F L ++DG +AW V + A + P+ YI+ E+ ++ Y
Sbjct: 23 EGCNFSTGFQLLLSDGQDAWRGEVKGAVVCNEAEELEMPLERYIEDIEQAFTGKENSNTY 82
Query: 82 GFT---DAADGCKRLSWTFEKEGTKLEWRWKCG-----PAPNSKKVPAGILDFLMDANIR 133
F+ + L+ T+EK + +R C P P I N++
Sbjct: 83 NFSLTPNPPGHSSTLTLTYEKMQKDISFRLGCVLLKAVPEPAEAVRNLLIYSLQRGNNLQ 142
Query: 134 LSAEKCLAQSERFKNE--------------KLEFESAIYAKFLGVLNSKKSKLRELQDKL 179
++ ++ER + E K E+ +Y++F+ VLN KK+K+R LQ ++
Sbjct: 143 HHNQRLQEENERLRGEQQHITAELKHYVGGKEALEAELYSRFVLVLNEKKAKIRILQQEV 202
Query: 180 SKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEE 214
+ + +++ ++ D +S G DD EE+
Sbjct: 203 TN---LEEMRSNDQRKRDSVKSGQTGGQDDGVEED 234
>gi|395511343|ref|XP_003759919.1| PREDICTED: DNA repair protein XRCC4 [Sarcophilus harrisii]
Length = 335
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 110/249 (44%), Gaps = 39/249 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQ- 75
F++ +W S FD+++TDG +AW + ++ A +Y+ + L +
Sbjct: 21 FLQVSWEKDLGSGFDITLTDGQSAWNGTVTASEISREADDMAMERDKYVDELRKALVLRT 80
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGT-------KLEWRWKCGPAPNSKKVPAGILDFLM 128
+P VY F + + C +++EK L + PA +++ + LD +
Sbjct: 81 EPANVYKFDFSKENCH---FSYEKSLKDVSFILGSLNLQKVSSPAEVIRELMSYCLDCMA 137
Query: 129 DA---NIRLSAEKCLAQS---------ERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
D N L E + Q E K E+ +Y +F+ VLN KK K+R L
Sbjct: 138 DQLAKNRHLQRENEMLQRDWSDVQKRLEECVTAKENLEADLYKRFVLVLNEKKGKIRSLH 197
Query: 177 DKLSKQAVMGDLQQEEEESTDETESFDEGTDD-------DKSEEEPAKDITSTSIGVPAS 229
KL KQA QQ E+++ DE ES D+ D+S +E ++++ S VPA+
Sbjct: 198 -KLLKQA-----QQPEKDTQDERESVDDIQSQKKREAAYDESTDEESENLPVPSKAVPAN 251
Query: 230 RARGRKRIS 238
++ IS
Sbjct: 252 FSQNDSIIS 260
>gi|402872026|ref|XP_003899944.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Papio anubis]
Length = 334
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|402872028|ref|XP_003899945.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Papio anubis]
Length = 336
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|311705761|gb|ADQ01146.1| XRCC4 [Papio anubis]
Length = 334
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|168051134|ref|XP_001778011.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670659|gb|EDQ57224.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1201
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 6 TCLKLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI 65
TC +L + IFV+ WF+S F ++ D ++W C+ +++ V++RA W+ EY+
Sbjct: 12 TCTRLTLDDGRR-IFVRTKWFKSSFHVTALDLPHSWSCSVNKQDVEERATRWEMSGEEYL 70
Query: 66 KLAERYLGFQQPGCVYGFTDAADGCKRLSWT 96
+ +L G +Y G RLSW
Sbjct: 71 IQSRLHLEEDVSGSMYSLNPLRSGAMRLSWN 101
>gi|327263042|ref|XP_003216330.1| PREDICTED: DNA repair protein XRCC4-like [Anolis carolinensis]
Length = 331
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 25/182 (13%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIK-LAERYLGFQ 75
F++ W + FD+ +TDG +AW +E++ AA + +Y++ L + +L
Sbjct: 19 FLQIVWEKDLGTGFDVILTDGQSAWSGRVPKEEISREAADMEMEQKKYVEELRKVFLTEG 78
Query: 76 QPGCVYGFTDAADGCKR--LSWTFEKEGTKLEWRW---KCGPAPNSKKVPAGILDFLMDA 130
P +Y F + +G L +++EK+ L +R K P+ +V + ++ +D
Sbjct: 79 IPSNIYNFDISKEGTNGDCLHFSYEKKLRDLSFRLGSLKLQRIPSPTEVISKLISCCLDF 138
Query: 131 NIRLSA--EKCLAQSERFKNE--------------KLEFESAIYAKFLGVLNSKKSKLRE 174
+ L A E ++E N+ K E E+ +Y KF+ VLN KK+K+R
Sbjct: 139 IVGLHAKNEHLQRENEILLNDLNEVQDQLQKCVEAKEELETELYKKFILVLNEKKAKIRN 198
Query: 175 LQ 176
LQ
Sbjct: 199 LQ 200
>gi|355750047|gb|EHH54385.1| X-ray repair cross-complementing protein 4 [Macaca fascicularis]
Length = 336
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEENENQPDPSGLASAAVS 252
>gi|417399124|gb|JAA46592.1| Putative dna repair protein xrcc4 [Desmodus rotundus]
Length = 334
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 31/245 (12%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ TW S F +++TDG +AW SE + A +Y+ +L + L
Sbjct: 19 FLQVTWEKTLGSGFVITLTDGQSAWTGAVSESAISQEAGDMAMEKEKYVDELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDFLM 128
P Y F + + C ++FEK + +R PA +++ LD +
Sbjct: 79 GPATAYKFNFSKESCH---FSFEKSLKDVSFRLGSFNLEKVASPAEVIRELICDCLDTI- 134
Query: 129 DANIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKFLGVLNSKKSKLRE 174
A R E ++ER + K E+ +Y +F+ VLN KK+K+R
Sbjct: 135 -AENRARNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKAKIRS 193
Query: 175 LQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVPASRARG 233
L LS+ Q + + E E +T D T D+S +E + + S+ PA+ R
Sbjct: 194 LHKLLSEAQEREKNNEHERETATCSEMIADRATVYDESTDEEGESLPDPSVSAPATLRRD 253
Query: 234 RKRIS 238
IS
Sbjct: 254 GSIIS 258
>gi|109077844|ref|XP_001111862.1| PREDICTED: DNA repair protein XRCC4-like isoform 5 [Macaca mulatta]
gi|109077846|ref|XP_001111900.1| PREDICTED: DNA repair protein XRCC4-like isoform 6 [Macaca mulatta]
gi|67969665|dbj|BAE01181.1| unnamed protein product [Macaca fascicularis]
gi|67972024|dbj|BAE02354.1| unnamed protein product [Macaca fascicularis]
Length = 334
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ +E +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-NENQP 241
>gi|311705759|gb|ADQ01145.1| XRCC4 [Pongo pygmaeus]
Length = 334
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNMKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
AE Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAENEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKLSKQA--VMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL A D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAEEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAVS 252
>gi|324072949|ref|NP_001126122.2| DNA repair protein XRCC4 [Pongo abelii]
gi|311705757|gb|ADQ01144.1| XRCC4 [Pongo abelii]
Length = 334
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNMKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
AE Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAENEHLQRENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKLSKQA--VMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL A D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAEEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAVS 252
>gi|311705765|gb|ADQ01148.1| XRCC4 [Cercopithecus wolfi]
Length = 334
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 106/245 (43%), Gaps = 54/245 (22%)
Query: 9 KLEIPHATDPIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI 65
+L I H F++ +W +S F +++TDG +AW SE ++ A +Y+
Sbjct: 13 ELNIAH-----FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYV 67
Query: 66 -KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSK 117
+L + + P VY F + + C + FEK + +R PA +
Sbjct: 68 DELRKALVSGAGPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPADVIR 124
Query: 118 KVPAGILD----------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIY 158
++ LD L N RL EKC++ E E+ +Y
Sbjct: 125 ELICYCLDTIAENEAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEAL-------ETDLY 177
Query: 159 AKFLGVLNSKKSKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDK 210
+F+ VLN KK+K+R L +KL + Q D++QE E + D +DE TD++
Sbjct: 178 KRFILVLNEKKTKIRSLHNKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE- 236
Query: 211 SEEEP 215
SE++P
Sbjct: 237 SEKQP 241
>gi|148231548|ref|NP_001085360.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Xenopus laevis]
gi|49257218|gb|AAH71127.1| MGC81443 protein [Xenopus laevis]
Length = 362
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 30 FDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIK-LAERYLGFQQPGCVYGFTDAAD 88
F +++TDG +AW S+E V A + + Y++ L + + P Y F D
Sbjct: 32 FTVALTDGHSAWTGEVSQEDVSQEAKDMEMERSNYVEELRKALIMTALPANKYNFDLLED 91
Query: 89 GCKRLSWTFEKEGTKLEWRWKCGPAP-NSKKVPAGILDFLMDANIRLSAE---------- 137
+ F E T E +K G S + PA ++ L+ + +AE
Sbjct: 92 RENPEIYHFTYEKTLKEVAFKLGSTKLKSVQNPAHVIKELISYCLGCTAELYSRNEHLQK 151
Query: 138 -----KC-----LAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKLSKQAVMGD 187
+C AQ E+F + K E E +Y +F VLN KK+K+R L++KLS+
Sbjct: 152 ENERLQCDWNDMHAQLEKFVDGKEELEQTLYTQFTCVLNEKKAKIRNLKEKLSE--AQER 209
Query: 188 LQQEEEES 195
L+Q+ E+S
Sbjct: 210 LKQKSEDS 217
>gi|311705769|gb|ADQ01150.1| XRCC4 [Lophocebus albigena]
Length = 334
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++Q+ E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEQEKDIKQKGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|397503360|ref|XP_003822293.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Pan paniscus]
gi|397503362|ref|XP_003822294.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Pan paniscus]
Length = 334
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAVS 252
>gi|311705783|gb|ADQ01157.1| XRCC4 [Miopithecus talapoin]
Length = 334
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDISFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRTLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|332821079|ref|XP_001148110.2| PREDICTED: DNA repair protein XRCC4 isoform 2 [Pan troglodytes]
gi|410039182|ref|XP_003950563.1| PREDICTED: DNA repair protein XRCC4 [Pan troglodytes]
gi|410225124|gb|JAA09781.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Pan troglodytes]
gi|410255142|gb|JAA15538.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Pan troglodytes]
gi|410292630|gb|JAA24915.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Pan troglodytes]
gi|410342553|gb|JAA40223.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Pan troglodytes]
Length = 334
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAVS 252
>gi|311705771|gb|ADQ01151.1| XRCC4 [Gorilla gorilla]
Length = 334
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P VY F + + C + FEK + +R PA +++ LD
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEAL-------ETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITS 221
+K+R L +KL + Q D++QE E + D +DE TD++ + + S
Sbjct: 189 TKIRSLHNKLLNAAQEQEKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLAS 248
Query: 222 TSIG 225
++
Sbjct: 249 AAVS 252
>gi|13528936|gb|AAH05259.1| XRCC4 protein [Homo sapiens]
gi|30583271|gb|AAP35880.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Homo sapiens]
gi|60656493|gb|AAX32810.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [synthetic construct]
gi|60656495|gb|AAX32811.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [synthetic construct]
gi|119616303|gb|EAW95897.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_a [Homo sapiens]
gi|119616305|gb|EAW95899.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_a [Homo sapiens]
Length = 310
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P VY F + + C + FEK + +R PA +++ LD
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------ALETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITS 221
+K+R L +KL + Q D++QE E + D +DE TD++ + + S
Sbjct: 189 TKIRSLHNKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
Query: 222 TSIG 225
++
Sbjct: 249 AAVS 252
>gi|426349384|ref|XP_004042286.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Gorilla gorilla
gorilla]
gi|426349386|ref|XP_004042287.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Gorilla gorilla
gorilla]
Length = 298
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P VY F + + C + FEK + +R PA +++ LD
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------ALETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITS 221
+K+R L +KL + Q D++QE E + D +DE TD++ + + S
Sbjct: 189 TKIRSLHNKLLNAAQEQEKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLAS 248
Query: 222 TSIG 225
++
Sbjct: 249 AAVS 252
>gi|4507945|ref|NP_003392.1| DNA repair protein XRCC4 isoform 1 [Homo sapiens]
gi|12408649|ref|NP_072044.1| DNA repair protein XRCC4 isoform 1 [Homo sapiens]
gi|1151115|gb|AAC50339.1| XRCC4 [Homo sapiens]
gi|5706611|gb|AAD47297.1| DNA repair protein XRCC4 [Homo sapiens]
gi|60115830|gb|AAX14046.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Homo sapiens]
gi|119616307|gb|EAW95901.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_c [Homo sapiens]
gi|119616308|gb|EAW95902.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_c [Homo sapiens]
gi|1586944|prf||2205251A XRCC4 gene
Length = 334
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P VY F + + C + FEK + +R PA +++ LD
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEAL-------ETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITS 221
+K+R L +KL + Q D++QE E + D +DE TD++ + + S
Sbjct: 189 TKIRSLHNKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
Query: 222 TSIG 225
++
Sbjct: 249 AAVS 252
>gi|30584793|gb|AAP36649.1| Homo sapiens X-ray repair complementing defective repair in Chinese
hamster cells 4 [synthetic construct]
gi|60653447|gb|AAX29418.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [synthetic construct]
Length = 311
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 102/244 (41%), Gaps = 48/244 (19%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P VY F + + C + FEK + +R PA +++ LD
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------ALETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITS 221
+K+R L +KL + Q D++QE E + D +DE TD++ + + S
Sbjct: 189 TKIRSLHNKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLAS 248
Query: 222 TSIG 225
++
Sbjct: 249 AAVS 252
>gi|332224891|ref|XP_003261603.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Nomascus leucogenys]
gi|332224895|ref|XP_003261605.1| PREDICTED: DNA repair protein XRCC4 isoform 3 [Nomascus leucogenys]
gi|311705773|gb|ADQ01152.1| XRCC4 [Nomascus leucogenys]
gi|311705781|gb|ADQ01156.1| XRCC4 [Hylobates agilis]
Length = 334
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 42/241 (17%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQISWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKV--PAGILDFLMDANIR 133
P VY F + + C + FEK + +R + N +KV PA ++ L+ +
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLG---SSNLEKVENPAEVIRELICYCLD 132
Query: 134 LSAEKCLAQSERFK--NEKL-------------------EFESAIYAKFLGVLNSKKSKL 172
AE A++E + NE+L E+ +Y +F+ VLN KK+K+
Sbjct: 133 TIAEN-QAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKI 191
Query: 173 RELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSI 224
R L +KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 192 RSLHNKLLNAAQEQEKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAV 251
Query: 225 G 225
Sbjct: 252 S 252
>gi|12408647|ref|NP_071801.1| DNA repair protein XRCC4 isoform 2 [Homo sapiens]
gi|44888352|sp|Q13426.2|XRCC4_HUMAN RecName: Full=DNA repair protein XRCC4; AltName: Full=X-ray repair
cross-complementing protein 4
gi|5706612|gb|AAD47298.1| DNA repair protein XRCC4 [Homo sapiens]
gi|12081905|dbj|BAB20668.1| XRCC4 [Homo sapiens]
gi|16740907|gb|AAH16314.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Homo sapiens]
gi|119616304|gb|EAW95898.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_b [Homo sapiens]
gi|119616306|gb|EAW95900.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_b [Homo sapiens]
gi|158254914|dbj|BAF83428.1| unnamed protein product [Homo sapiens]
gi|190690541|gb|ACE87045.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 protein [synthetic construct]
Length = 336
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDLSGLASAAVS 252
>gi|311705779|gb|ADQ01155.1| XRCC4 [Macaca fascicularis]
Length = 334
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F + +TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVIILTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ +E +P
Sbjct: 196 NKLLNTAQEQEKDIKQEGETTICSEMTADRDPVYDESTDEE-NENQP 241
>gi|311705785|gb|ADQ01158.1| XRCC4 [Colobus guereza]
Length = 334
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F ++ TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITFTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDISFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEREKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|311705789|gb|ADQ01160.1| XRCC4 [Symphalangus syndactylus]
Length = 334
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 42/225 (18%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQISWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKV--PAGILDFLMDANIR 133
P VY F + + C + FEK + +R + N +KV PA ++ L+ +
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLG---SSNLEKVENPAEVIRELICYCLD 132
Query: 134 LSAEKCLAQSERFK--NEKL-------------------EFESAIYAKFLGVLNSKKSKL 172
AE A++E + NE+L E+ +Y +F+ VLN KK+K+
Sbjct: 133 TIAEN-QAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKI 191
Query: 173 RELQDKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDD 209
R L +KL + Q D++QE E + D +DE TD++
Sbjct: 192 RSLHNKLLNAAQEQEKDIKQEGETAICSEMTADRDPVYDESTDEE 236
>gi|380790549|gb|AFE67150.1| DNA repair protein XRCC4 isoform 1 [Macaca mulatta]
gi|383412317|gb|AFH29372.1| DNA repair protein XRCC4 isoform 1 [Macaca mulatta]
Length = 334
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q +++QE E + D +DE TD++ +E +P
Sbjct: 196 NKLLNTAQEQEKNIKQEGETTICSEMTADRDPVYDESTDEE-NENQP 241
>gi|410923409|ref|XP_003975174.1| PREDICTED: DNA repair protein XRCC4-like [Takifugu rubripes]
Length = 294
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 36/215 (16%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYL-G 73
P F++ W F L++TDG +AW+ SEE++ A EY+ R L G
Sbjct: 17 PYFLRLDWAVDLAGGFTLALTDGSSAWIGEVSEEELTREADDMGVTTEEYVDDVLRALAG 76
Query: 74 FQQPG--------CVYGFTDAADGCKRLSWTFEKEGTKLEW-RWKCGPAPNSKKVPAGIL 124
G Y D C RLS+ + + PA + + ++
Sbjct: 77 DGAQGHRRDDGEEAAYSLQLTPDHC-RLSYQKISNNVLVNLGSVELQPALDPVDLNRDMI 135
Query: 125 DFLMDANIRLSAEKC--LAQSERFKNE--------------KLEFESAIYAKFLGVLNSK 168
+ + L +E C L +++R K E K E +Y++F+ VLN K
Sbjct: 136 GQSLKRSTDLESENCRLLEENDRLKQEHRRILHELEQQVVDKEAMERELYSRFVVVLNEK 195
Query: 169 KSKLRELQDKLSKQAVMGDLQQEEEESTDETESFD 203
K+K+R LQD L + LQQ EEE FD
Sbjct: 196 KAKIRSLQDTLHQ------LQQAEEEREHAAGVFD 224
>gi|355691451|gb|EHH26636.1| X-ray repair cross-complementing protein 4 [Macaca mulatta]
Length = 336
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENEAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q +++QE E + D +DE TD++ +E +P
Sbjct: 196 NKLLNTAQEQEKNIKQEGETTICSEMTADRDPVYDESTDEE-NENQP 241
>gi|311705787|gb|ADQ01159.1| XRCC4 [Trachypithecus francoisi]
Length = 334
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F ++ TDG +AW SE + A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLESGFVITFTDGHSAWTGTVSESDISQEADDMAMEKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLKKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNKHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEP 215
+KL + Q D++QE E + D +DE TD++ SE +P
Sbjct: 196 NKLLNTAQEREKDIKQEGETTICSEMTADRDPVYDESTDEE-SENQP 241
>gi|343958494|dbj|BAK63102.1| DNA-repair protein XRCC4 [Pan troglodytes]
Length = 334
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F + +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FPQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRDLICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL + Q D++QE E + D +DE TD++ + + S ++
Sbjct: 196 NKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEESENQTDPSGLASAAVS 252
>gi|311705775|gb|ADQ01153.1| XRCC4 [Alouatta sara]
Length = 334
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
+++ +W +S F L +TDG +AW SE ++ + A +Y+ +L + +
Sbjct: 19 YLQVSWEKTLESGFVLILTDGHSAWTGTVSESEISEEADDMAMDKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYKFDFSKETCH---FFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ N K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVNAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKLSKQA--------VMGDLQQEEEESTDETESFDEGTDDDKSEEEP 215
+KL A G+ E + D +DE TD++ SE +P
Sbjct: 196 NKLLNGAQEQEKDIKYEGEATVHSEMTADRDPVYDESTDEE-SENQP 241
>gi|444729586|gb|ELW69997.1| DNA repair protein XRCC4 [Tupaia chinensis]
Length = 360
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 3 TRQTCLKLE--IPHATDPIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALW 57
R+ CL E I H F++ +W S F +++TDG +AW+ SE ++ A
Sbjct: 5 VRRICLASEPNIIH-----FLQVSWEKTLGSGFVITLTDGQSAWIGTVSESEISQEADDM 59
Query: 58 DQPVTEYI-KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK------- 109
+Y+ +L + + P Y F + + C ++FEK + +R
Sbjct: 60 AMEKEKYVDELRKALVSETGPADAYNFNFSKESCH---FSFEKNLKDVSFRLGSFNLEKV 116
Query: 110 CGPAPNSKKVPAGILD----------FLMDANIRL---------SAEKCLAQSERFKNEK 150
PA +++ LD L N RL EKC++ E
Sbjct: 117 ASPAEVIRELICYCLDTITENQAKNEHLQKENERLLRDWNDIEGRFEKCVSAKEAL---- 172
Query: 151 LEFESAIYAKFLGVLNSKKSKLRELQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDD 209
E +Y +F+ VLN KK+K+R LQ L++ Q + + + E E +T + D D
Sbjct: 173 ---EMDLYERFILVLNEKKTKIRTLQKSLNEIQELQKNTECERETATCSEMTVDRDAIYD 229
Query: 210 KSEEEPAKDITSTSI 224
+S +E +++++ S+
Sbjct: 230 ESTDEESENLSGLSV 244
>gi|410903996|ref|XP_003965479.1| PREDICTED: DNA repair protein XRCC4-like [Takifugu rubripes]
Length = 375
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 23 GTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYG 82
G S F+L +TDG NAW + SE V A + YI+ ++ L + Y
Sbjct: 58 GRGLGSGFELLLTDGQNAWRGDVSEAAVCREAEELEMQPERYIQDLQQALTGTEKSTNYS 117
Query: 83 FT---DAADGCKRLSWTFEKEGTKLEWRW-----KCGPAP---------------NSKKV 119
F + ++ +EK + +R K P P N+ +
Sbjct: 118 FVLTPSPPNSSSAVTLAYEKVQRDISFRMGSVLLKAVPEPTEAVRELLVHSLQRGNALER 177
Query: 120 PAGILDFLMDANIRLSAE--KCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQD 177
G L+ + N RL E + A+ + + +K E+ +Y++F+ VLN KK+K+R LQ
Sbjct: 178 HNGKLE---EENQRLIEEHQRITAELKHYAGDKEALEAELYSRFVLVLNEKKAKIRSLQQ 234
Query: 178 KLSK-QAVMGDLQQEEEE-STDETESFDEGTDDDKSEEEP--AKDITSTSIGVPASRARG 233
+++ Q D QQ+++ D++ ++ ++EEP A++ +++ P + A G
Sbjct: 235 NITRLQEASADKQQKKDSVKCDQSAGQEQDEYGGSTDEEPGDARETAASASLPPEASAEG 294
>gi|149726519|ref|XP_001504688.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Equus caballus]
Length = 335
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 39/249 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W S F +++TDG +AW E ++ A +Y+ +L + +
Sbjct: 19 FLQIAWEKTLGSGFVITLTDGQSAWTGTVCESEISQEADDMAMEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDFLM 128
P Y F + + C ++FEK + +R PA +++ LD +
Sbjct: 79 GPTDAYKFNFSKESCH---FSFEKNLKDVSFRLGTFNLEKVASPAEVIRELICDCLDTIA 135
Query: 129 -----DANIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+ ++R E+ L + E+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLRKENERLLRDWNDVQGRFEKCVSAKEAVEADLYKRFILVLNEKKAKIRSLH 195
Query: 177 DKLSK-QAVMGDLQQEEEEST------DETESFDEGTDDDKSEEEPAKDITSTSIGVPAS 229
L++ Q + +++ E+E +T D ++DE TD+D ++++ S PA+
Sbjct: 196 KLLNEVQELEKNMEHEKETTTCSEMTADRDAAYDESTDED------SENVPDPSGSAPAT 249
Query: 230 RARGRKRIS 238
R IS
Sbjct: 250 LRRDDSIIS 258
>gi|149726517|ref|XP_001504687.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Equus caballus]
Length = 333
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 39/249 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W S F +++TDG +AW E ++ A +Y+ +L + +
Sbjct: 19 FLQIAWEKTLGSGFVITLTDGQSAWTGTVCESEISQEADDMAMEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDFLM 128
P Y F + + C ++FEK + +R PA +++ LD +
Sbjct: 79 GPTDAYKFNFSKESCH---FSFEKNLKDVSFRLGTFNLEKVASPAEVIRELICDCLDTIA 135
Query: 129 -----DANIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+ ++R E+ L + E+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLRKENERLLRDWNDVQGRFEKCVSAKEAVEADLYKRFILVLNEKKAKIRSLH 195
Query: 177 DKLSK-QAVMGDLQQEEEEST------DETESFDEGTDDDKSEEEPAKDITSTSIGVPAS 229
L++ Q + +++ E+E +T D ++DE TD+D ++++ S PA+
Sbjct: 196 KLLNEVQELEKNMEHEKETTTCSEMTADRDAAYDESTDED------SENVPDPSGSAPAT 249
Query: 230 RARGRKRIS 238
R IS
Sbjct: 250 LRRDDSIIS 258
>gi|167997855|ref|XP_001751634.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697615|gb|EDQ83951.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 858
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 14 HATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLG 73
H +FVKGTW S F +S+ DG AW A ++ + + A +EY+ + Y
Sbjct: 171 HNAPHLFVKGTWLPSAFSISVHDGSLAWTGKADKDFILNHAGKLGMTESEYVDTMQCYFS 230
Query: 74 FQQPGCVY 81
QQP Y
Sbjct: 231 EQQPDATY 238
>gi|260820431|ref|XP_002605538.1| hypothetical protein BRAFLDRAFT_130664 [Branchiostoma floridae]
gi|229290872|gb|EEN61548.1| hypothetical protein BRAFLDRAFT_130664 [Branchiostoma floridae]
Length = 326
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 24/185 (12%)
Query: 30 FDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCV-----YGFT 84
F L++ DGL+AW E +K+ A ++ + R L + G +
Sbjct: 28 FQLTLCDGLSAWAGQVDGEDMKEMADESGMEFETFVAESVRALTRENMGDITFHYSVEIQ 87
Query: 85 DAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDA----------- 130
+ C++ SW K+ ++ K A + + I D +
Sbjct: 88 EEDVTCRQFSWKKYIPSEKVRFQLGSMKLREAASPGEAMQQIFDHALGKVEELRHTISDV 147
Query: 131 ---NIRLSAE--KCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKLSKQAVM 185
RLS E K L + E++ +K E E +YAKF+ V+N KK+K+R+L+D+L++ M
Sbjct: 148 QKEKDRLSGERTKALERLEKYVAQKEEMEGDLYAKFVVVVNDKKAKIRQLKDELAQAREM 207
Query: 186 GDLQQ 190
QQ
Sbjct: 208 AATQQ 212
>gi|255918059|pdb|3II6|A Chain A, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
gi|255918060|pdb|3II6|B Chain B, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
gi|255918061|pdb|3II6|C Chain C, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv.
gi|255918062|pdb|3II6|D Chain D, Structure Of Human Xrcc4 In Complex With The Tandem Brct
Domains Of Dna Ligaseiv
Length = 203
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A + +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMEMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYTFNFSKESC---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKLSKQA 183
+KL A
Sbjct: 196 NKLLNAA 202
>gi|311705763|gb|ADQ01147.1| XRCC4 [Callicebus cupreus]
Length = 334
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 100/237 (42%), Gaps = 34/237 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
+++ +W +S F +TDG +AW SE ++ + A +Y+ +L + +
Sbjct: 19 YLQVSWEKTLESGFVFILTDGHSAWTGTVSESEISEEADDMAMDKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P VY F + + C + FEK + +R + N +V ++ + +D
Sbjct: 79 GPADVYKFDFSKETCH---FFFEKTLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIT 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKLSKQA--------VMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
+KL A G+ E + D +DE TD++ ++ A + S ++
Sbjct: 196 NKLLNGAQEQEKDIKYEGEATIRSETTADRGPVYDESTDEESEDQPDASGLASAAVS 252
>gi|403256329|ref|XP_003920835.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 336
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 12 IPHATDP---IFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI 65
I A++P +++ +W +S F L +TDG +AW SE ++ + A +Y+
Sbjct: 8 IHLASEPNISYYLQVSWEKTLESGFVLILTDGHSAWTGTVSESEISEEADDMAMDKGKYV 67
Query: 66 -KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPA 121
+L + + P VY + + + C + FEK + +R + N +V
Sbjct: 68 GELRKALVSGAGPADVYKYDFSKETCH---FFFEKNLKDVSFRLGSFNLEKVENPAEVIR 124
Query: 122 GILDFLMD--ANIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKFLGVL 165
++ + +D A + E ++ER + K E+ +Y +F+ VL
Sbjct: 125 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVL 184
Query: 166 NSKKSKLRELQDKLSKQA--------VMGDLQQEEEESTDETESFDEGTDDDKSEEEPAK 217
N KK+K+R L +KL A G+ + E + D +DE TD++ + +
Sbjct: 185 NEKKTKIRSLHNKLLNGAQEQEKDIKYEGEAKIHSEMTADRDPVYDESTDEENENQPDSS 244
Query: 218 DITSTSIG 225
+ S ++
Sbjct: 245 GLASAAVS 252
>gi|403256327|ref|XP_003920834.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Saimiri boliviensis
boliviensis]
gi|311705777|gb|ADQ01154.1| XRCC4 [Saimiri sciureus]
Length = 334
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 12 IPHATDP---IFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI 65
I A++P +++ +W +S F L +TDG +AW SE ++ + A +Y+
Sbjct: 8 IHLASEPNISYYLQVSWEKTLESGFVLILTDGHSAWTGTVSESEISEEADDMAMDKGKYV 67
Query: 66 -KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPA 121
+L + + P VY + + + C + FEK + +R + N +V
Sbjct: 68 GELRKALVSGAGPADVYKYDFSKETCH---FFFEKNLKDVSFRLGSFNLEKVENPAEVIR 124
Query: 122 GILDFLMD--ANIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKFLGVL 165
++ + +D A + E ++ER + K E+ +Y +F+ VL
Sbjct: 125 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVL 184
Query: 166 NSKKSKLRELQDKLSKQA--------VMGDLQQEEEESTDETESFDEGTDDDKSEEEPAK 217
N KK+K+R L +KL A G+ + E + D +DE TD++ + +
Sbjct: 185 NEKKTKIRSLHNKLLNGAQEQEKDIKYEGEAKIHSEMTADRDPVYDESTDEENENQPDSS 244
Query: 218 DITSTSIG 225
+ S ++
Sbjct: 245 GLASAAVS 252
>gi|348537274|ref|XP_003456120.1| PREDICTED: hypothetical protein LOC100705798 [Oreochromis
niloticus]
Length = 609
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 42/252 (16%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIK-----LAE 69
P F++ W + F L++T+G +AW+ SE+ + A P Y++ L +
Sbjct: 42 PYFLRVDWAIDLGAGFTLALTNGSSAWIGEVSEDDMTREANDIGVPRERYVEDLLQALTK 101
Query: 70 RYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRW---KCGPAPNSKKVPAGIL-- 124
G + +Y F +AD R +EK + + P+P+ ++ ++
Sbjct: 102 SGGGKSEDKEMYTFGLSAD---RRCLLYEKTCNDISVHLGSVELQPSPDPLELTRDMIAQ 158
Query: 125 ------------DFLMDANIRL--SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKS 170
L++ N +L ++ L Q E+ +K E +Y++F+ VLN KK+
Sbjct: 159 SLKRSTDLETENSRLLEQNCKLKQDHQRILGQLEQQVQKKEALEKELYSRFVMVLNKKKA 218
Query: 171 KLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEE---------EPAKDITS 221
K+R LQ+ ++K D +EE + + + D+ EE EP IT
Sbjct: 219 KIRGLQEAVNKLRNSDDHPSDEEGVQSDNLTTQGESSPDRGEETSQSIQPSLEPTILITG 278
Query: 222 TSI---GVPASR 230
++ G+P R
Sbjct: 279 RNLVWEGIPVDR 290
>gi|311249801|ref|XP_003123809.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Sus scrofa]
Length = 300
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWIGTVSESEISQEADDMALEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDA-- 130
P Y F + D C+ ++FEK + +R + N +V ++ + +D
Sbjct: 79 GPTDTYKFNFSKDSCQ---FSFEKNLKDVSFRLGSFNLEKVANPAEVIRELICYCLDTIS 135
Query: 131 -------NIRLSAEKCLAQ----SERFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+++ E+ L ERF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 EKQAKNEHLQKENERLLRDWNDVQERFEKCVSAKEAVETDLYKRFILVLNEKKAKIRSLY 195
Query: 177 DKLSK-QAVMGDLQQEE------EESTDETESFDEGTDDD 209
L++ Q + +++ + E +TD +DE TD++
Sbjct: 196 KLLNEVQELEKNIEHKREIPTCSEMTTDRDSIYDESTDEE 235
>gi|355729439|gb|AES09869.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Mustela putorius furo]
Length = 332
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 47/227 (20%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W S F +++TDG +AW SE ++ A +Y+ +L + +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWTGTVSESEISQEADDMALEKEKYVDELRKALVSGG 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILD--- 125
+P Y F + + C ++FEK + +R PA +K+ LD
Sbjct: 79 RPTDAYKFDFSRESCH---FSFEKNLKDVSFRLGSFSLEKVASPAEVIRKLICDCLDTIT 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------ALETDLYKRFILVLNEKK 188
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETES-------FDEGTDDD 209
+K+R L LS+ + + E E+T +E +DE TD++
Sbjct: 189 AKIRNLHKLLSEVQELEKNIEHERETTTHSEMTAGRDAIYDESTDEE 235
>gi|311249799|ref|XP_003123808.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Sus scrofa]
Length = 333
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ W S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWIGTVSESEISQEADDMALEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDA-- 130
P Y F + D C+ ++FEK + +R + N +V ++ + +D
Sbjct: 79 GPTDTYKFNFSKDSCQ---FSFEKNLKDVSFRLGSFNLEKVANPAEVIRELICYCLDTIS 135
Query: 131 -------NIRLSAEKCLAQ----SERFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+++ E+ L ERF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 EKQAKNEHLQKENERLLRDWNDVQERFEKCVSAKEAVETDLYKRFILVLNEKKAKIRSLY 195
Query: 177 DKLSK-QAVMGDLQQEE------EESTDETESFDEGTDDD 209
L++ Q + +++ + E +TD +DE TD++
Sbjct: 196 KLLNEVQELEKNIEHKREIPTCSEMTTDRDSIYDESTDEE 235
>gi|57084883|ref|XP_546040.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Canis lupus
familiaris]
Length = 332
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 45/243 (18%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVK---DRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW SE ++ D AL + + ++ A +
Sbjct: 19 FLQVAWEKTLASGFVITLTDGQSAWTGTVSESEISQEADDMALEKEKYVDEVRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILD- 125
P Y F + + C ++FEK ++ +R P +K+ LD
Sbjct: 77 GGGPAGSYKFDFSRESCH---FSFEKNLKEVSFRLGSFNLEKVANPGEVIRKLICDCLDT 133
Query: 126 ---------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
L N RL EKC++ E E+ +Y +F+ VLN
Sbjct: 134 ITENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------AMETDLYQRFILVLNE 186
Query: 168 KKSKLRELQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGV 226
KK+K+R L L++ Q + +++ E E + + D D+S +E + + + S+
Sbjct: 187 KKAKIRSLHKLLNEVQELEKNIEHERETTACSEMTADRDAIYDESTDEEKEKLPNPSVSA 246
Query: 227 PAS 229
PA+
Sbjct: 247 PAT 249
>gi|334325776|ref|XP_001369113.2| PREDICTED: DNA repair protein XRCC4-like [Monodelphis domestica]
Length = 335
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF-Q 75
F++ +W S FD+ +TDG +AW + ++ A +Y+ ++ L
Sbjct: 19 FLQVSWEKDLGSGFDIILTDGQSAWSGTVTTSEISREADDMAMERDKYVDELKKALVLGT 78
Query: 76 QPGCVYGFTDAADGC--------KRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGILDFL 127
+P VY F + + C K +S+ G+ L + PA +++ + L+ +
Sbjct: 79 EPANVYKFDFSKENCNFSYSRNLKNVSFIL---GS-LILQKVSSPAEVIRELMSYCLNCM 134
Query: 128 MDA---NIRLSAEKCLAQS---------ERFKNEKLEFESAIYAKFLGVLNSKKSKLREL 175
D N L E + Q E+ +K E+ ++ +F+ VLN KK+K+R L
Sbjct: 135 ADQLAKNEHLQRENEMLQRDWNDVQKRLEKCVTDKENLEADLHKRFVLVLNEKKAKIRSL 194
Query: 176 QDKLSKQAVMGDLQQEEEESTDETESFD--EGTDDDKSEEEPAK---DITSTSIGV 226
L + +Q+E ES D +S + E D+ S+EE I TS G+
Sbjct: 195 HKSLIQAKKSEKEKQDERESVDNAQSLNKRESVHDESSDEESENLTVPIEVTSAGI 250
>gi|73952142|ref|XP_849518.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Canis lupus
familiaris]
Length = 335
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 102/243 (41%), Gaps = 45/243 (18%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVK---DRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW SE ++ D AL + + ++ A +
Sbjct: 19 FLQVAWEKTLASGFVITLTDGQSAWTGTVSESEISQEADDMALEKEKYVDEVRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILD- 125
P Y F + + C ++FEK ++ +R P +K+ LD
Sbjct: 77 GGGPAGSYKFDFSRESCH---FSFEKNLKEVSFRLGSFNLEKVANPGEVIRKLICDCLDT 133
Query: 126 ---------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
L N RL EKC++ E E+ +Y +F+ VLN
Sbjct: 134 ITENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKE-------AMETDLYQRFILVLNE 186
Query: 168 KKSKLRELQDKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGV 226
KK+K+R L L++ Q + +++ E E + + D D+S +E + + + S+
Sbjct: 187 KKAKIRSLHKLLNEVQELEKNIEHERETTACSEMTADRDAIYDESTDEEKEKLPNPSVSA 246
Query: 227 PAS 229
PA+
Sbjct: 247 PAT 249
>gi|163915129|ref|NP_001106551.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Xenopus (Silurana) tropicalis]
gi|159155754|gb|AAI54930.1| LOC100127743 protein [Xenopus (Silurana) tropicalis]
Length = 337
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 25/185 (13%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W + F +++TDG +AW E V A + + Y+ +L + +
Sbjct: 19 FLQISWKKDLGNGFAVALTDGKSAWTGEVFPEDVTQEAKDMEMERSNYVDELRKALIMTT 78
Query: 76 QPGCVYGFTDAAD--GCKRLSWTFEKEGTKLEWRW---KCGPAPNSKKVPAGILDFLMDA 130
P Y F D + +T+EK+ ++ ++ K N V ++++ +D
Sbjct: 79 LPANKYNFDLLEDEENPEIYHFTYEKKLKEVAFKLGSTKLKNVQNPAHVIRELINYCLDC 138
Query: 131 --------------NIRLSAE--KCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRE 174
N RL + AQ E+F N K E E +Y +F VLN KK+K+R
Sbjct: 139 TSELYSRNEHLQKENERLQCDWNDMHAQLEKFVNGKEELERDLYTRFTCVLNEKKAKIRS 198
Query: 175 LQDKL 179
L++KL
Sbjct: 199 LKEKL 203
>gi|432874418|ref|XP_004072487.1| PREDICTED: DNA repair protein XRCC4-like [Oryzias latipes]
Length = 298
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEE----QVKDRAALWDQPVTEYIKLAERYL 72
F++ W + F L++TDG +AW+ SE+ + DR + ++ V + ++
Sbjct: 19 FLRVDWAVDLGAGFTLALTDGSSAWIGEVSEDDLTREASDRGIVRERYVRDLLQ------ 72
Query: 73 GFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCG------------PAPNSKKVP 120
+ G G D K S+ + L ++ C PAP+ ++
Sbjct: 73 ALTKTGMEQGKRRGEDK-KAFSFDISPDHRYLSYQKICNNNTIHLGSVELQPAPDPVELT 131
Query: 121 AGILDFLMDANIRLSAEK--CLAQSERFKNEKL--------------EFESAIYAKFLGV 164
G++ + + L AE LA++ R E L + E +Y +F+ V
Sbjct: 132 RGMIAQSLQRSTDLEAENSMLLAENHRLSEEHLRTVKELKQQVQDKEKLEMELYRRFVMV 191
Query: 165 LNSKKSKLRELQDKLSK 181
+N KK+K+R LQD + +
Sbjct: 192 MNEKKAKIRSLQDAVHQ 208
>gi|17943123|pdb|1IK9|A Chain A, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
gi|17943124|pdb|1IK9|B Chain B, Crystal Structure Of A Xrcc4-Dna Ligase Iv Complex
Length = 213
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILDFLM 128
P VY F + + + FEK + +R PA +++ A LD +
Sbjct: 79 GPADVYTFNFSKESA---YFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELIAYALDTIA 135
Query: 129 -----DANIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+ +++ E+ L + E+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195
Query: 177 DKL--SKQAVMGDLQQE 191
+KL + Q D++QE
Sbjct: 196 NKLLNAAQEREKDIKQE 212
>gi|12084561|pdb|1FU1|A Chain A, Crystal Structure Of Human Xrcc4
gi|12084562|pdb|1FU1|B Chain B, Crystal Structure Of Human Xrcc4
Length = 203
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW SE ++ A +Y+ +L + L
Sbjct: 19 FLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCGPAPNSKKV--PAGILDFLMDANIR 133
P VY F + + + FEK + +R + N +KV PA ++ L+ +
Sbjct: 79 GPADVYTFNFSKESX---YFFFEKNLKDVSFRL---GSFNLEKVENPAEVIRELIXYXLD 132
Query: 134 LSAEKCLAQSERFK--NEKL-------------------EFESAIYAKFLGVLNSKKSKL 172
+AE A++E + NE+L E+ +Y +F+ VLN KK+K+
Sbjct: 133 TTAENQ-AKNEHLQKENERLLRDWNDVQGRFEKXVSAKEALETDLYKRFILVLNEKKTKI 191
Query: 173 RELQDKLSKQA 183
R L +KL A
Sbjct: 192 RSLHNKLLNAA 202
>gi|168051695|ref|XP_001778289.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670386|gb|EDQ56956.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 206
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 19 IFVKGTWFQSHFDLSITDGLNAWLCNAS 46
I+VKGTW+ +HF +S+ DG + W+CN +
Sbjct: 47 IYVKGTWYPTHFLMSVMDGYDTWVCNGT 74
>gi|351697272|gb|EHB00191.1| DNA repair protein XRCC4, partial [Heterocephalus glaber]
Length = 294
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 104/245 (42%), Gaps = 43/245 (17%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQVSWDKMLGSGFVITLTDGQSAWIGTVSESEIGQEADDMAMEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKCG---------PAPNSKKVPAGILDF 126
P Y F + + C F E T + ++ G PA ++ LD
Sbjct: 79 DPVDAYQFDFSEEDC-----CFSCEKTLKDVSFRLGSFNLEKVANPAEAIREFICYCLDS 133
Query: 127 LM-----DANIRLSAEKCL----AQSERFK---NEKLEFESAIYAKFLGVLNSKKSKLRE 174
+ + +++ E+ L A ERF+ N K E +Y +F+ VLN KKSK+R
Sbjct: 134 IAENKAKNEHLQKENERLLRDWNAVQERFEKCVNAKEGLEIDLYKRFVLVLNEKKSKIRS 193
Query: 175 LQDKLSKQAVMGDLQQEEEESTDETE-------SFDEGTDDDKSEEEPAKDITSTSIGVP 227
L L++ + E E+T E +DE TD E + D + S+ P
Sbjct: 194 LHKLLNEVQELEKNMPHEREATASCEIPAAQDPIYDESTD------EESGDRSEASVSAP 247
Query: 228 ASRAR 232
A+ ++
Sbjct: 248 ATLSK 252
>gi|291394974|ref|XP_002713997.1| PREDICTED: X-ray repair cross complementing protein 4 isoform 1
[Oryctolagus cuniculus]
Length = 330
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 34/240 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQ 76
F++ +W S F + +TDG +AW SE ++ A +Y+ +R L +
Sbjct: 19 FLQISWEKTVGSGFVILLTDGQSAWTGTVSETEITQEADDMAMEKEKYVDELKRALVSEA 78
Query: 77 -PGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P Y F + + C ++FEK+ + +R +K + ++ ++ + +DA
Sbjct: 79 GPADAYKFNFSQESCH---FSFEKKLKDVSFRLGSFKLEKVASPAEIIRELICYCLDAIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ETQAKHEHLQKENARLLRDWNDIQGRFEKCVSAKEALEADLYRRFILVLNEKKAKIRSLH 195
Query: 177 DKLSKQAVMGDLQQEEE--ESTDETESFDEGTDDDKSEEEPAKDITSTSIGVPASRARGR 234
LS ++Q+ E+ E ET + E T D + + + D ++ P+ A G+
Sbjct: 196 KLLS------EIQELEKNTEHVRETTACSEPTADRDAVYDASTDEEGENLAGPSVAAAGK 249
>gi|291394976|ref|XP_002713998.1| PREDICTED: X-ray repair cross complementing protein 4 isoform 2
[Oryctolagus cuniculus]
Length = 332
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 34/240 (14%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQ 76
F++ +W S F + +TDG +AW SE ++ A +Y+ +R L +
Sbjct: 19 FLQISWEKTVGSGFVILLTDGQSAWTGTVSETEITQEADDMAMEKEKYVDELKRALVSEA 78
Query: 77 -PGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMDANI 132
P Y F + + C ++FEK+ + +R +K + ++ ++ + +DA
Sbjct: 79 GPADAYKFNFSQESCH---FSFEKKLKDVSFRLGSFKLEKVASPAEIIRELICYCLDAIA 135
Query: 133 RLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
A+ Q E RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ETQAKHEHLQKENARLLRDWNDIQGRFEKCVSAKEALEADLYRRFILVLNEKKAKIRSLH 195
Query: 177 DKLSKQAVMGDLQQEEE--ESTDETESFDEGTDDDKSEEEPAKDITSTSIGVPASRARGR 234
LS ++Q+ E+ E ET + E T D + + + D ++ P+ A G+
Sbjct: 196 KLLS------EIQELEKNTEHVRETTACSEPTADRDAVYDASTDEEGENLAGPSVAAAGK 249
>gi|431907883|gb|ELK11490.1| DNA repair protein XRCC4 [Pteropus alecto]
Length = 297
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 104/237 (43%), Gaps = 27/237 (11%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ TW S F +++TD +AW E + A +Y+ +L + +
Sbjct: 19 FLQVTWEKTLGSGFVITLTDCQSAWTGTVCESMILQEADDMAMEKEKYVDELRKALVTRA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRW-------KCGPAPNSKKVPAGILDFLM 128
P Y F + + C ++FEK + +R PA +++ LD +
Sbjct: 79 GPADAYKFNFSKESC---HFSFEKNLKDVSFRLGSFNLEKVASPAEVIRELICDCLDTIT 135
Query: 129 -----DANIRLSAEKCLAQ----SERFK---NEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
+ +++ E+ L +RF+ + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWNDVQKRFEKCVDAKEAVETDLYKRFILVLNEKKAKIRSLH 195
Query: 177 DKLSK-QAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVPASRAR 232
LS+ Q + +++ E E +T + D ++S +E ++I S+ P + R
Sbjct: 196 KLLSEVQELEKNIEHERETATCSEMTTDRDAVYNESTDEEGENIPDPSVLAPDTLRR 252
>gi|348587542|ref|XP_003479526.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Cavia
porcellus]
Length = 335
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 37/242 (15%)
Query: 5 QTCLKLEIPHATDPIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPV 61
+ CL + P+ T F++ +W +S F +++TDG +AW+ SE ++ A
Sbjct: 7 RICL-VSKPNVTH--FLQVSWEKSLESGFVITLTDGQSAWIGTVSESEIGQEADDMAMEK 63
Query: 62 TEYI-KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSK 117
+Y+ +L + + G Y F + C ++ EK + +R + N
Sbjct: 64 EKYVGELRKALVSGAGTGDAYKFDFSEGDC---CFSCEKNLKDVSFRLGSFNLEKVANPA 120
Query: 118 KVPAGILDFLMD--ANIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKF 161
+V +L + +D A + E ++ER + K + E+ +Y +F
Sbjct: 121 EVIRELLCYCLDNIAENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEDLETDLYKRF 180
Query: 162 LGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETES-------FDEGTDDDK-SEE 213
+ VLN KKSK+R L L++ + + E E+T +E+ +D TD+ SE
Sbjct: 181 ILVLNEKKSKIRSLHKLLNEVQELEKNIEREREATASSETPAARDPLYDASTDEGSGSES 240
Query: 214 EP 215
EP
Sbjct: 241 EP 242
>gi|348587544|ref|XP_003479527.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Cavia
porcellus]
Length = 333
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 37/242 (15%)
Query: 5 QTCLKLEIPHATDPIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPV 61
+ CL + P+ T F++ +W +S F +++TDG +AW+ SE ++ A
Sbjct: 7 RICL-VSKPNVTH--FLQVSWEKSLESGFVITLTDGQSAWIGTVSESEIGQEADDMAMEK 63
Query: 62 TEYI-KLAERYLGFQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSK 117
+Y+ +L + + G Y F + C ++ EK + +R + N
Sbjct: 64 EKYVGELRKALVSGAGTGDAYKFDFSEGDC---CFSCEKNLKDVSFRLGSFNLEKVANPA 120
Query: 118 KVPAGILDFLMD--ANIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKF 161
+V +L + +D A + E ++ER + K + E+ +Y +F
Sbjct: 121 EVIRELLCYCLDNIAENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEDLETDLYKRF 180
Query: 162 LGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETES-------FDEGTDDDK-SEE 213
+ VLN KKSK+R L L++ + + E E+T +E+ +D TD+ SE
Sbjct: 181 ILVLNEKKSKIRSLHKLLNEVQELEKNIEREREATASSETPAARDPLYDASTDEGSGSES 240
Query: 214 EP 215
EP
Sbjct: 241 EP 242
>gi|41387194|ref|NP_957080.1| DNA repair protein XRCC4 [Danio rerio]
gi|37589745|gb|AAH59635.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Danio rerio]
Length = 357
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 30/191 (15%)
Query: 19 IFVKGTWFQ---SHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQ 75
F+K W + S F + + DG +AW SEE V A + Y+ + L
Sbjct: 21 FFLKLEWAEDLGSGFVIFLCDGESAWSGEVSEEDVSREAREMEMERDRYVCDLQLALTGA 80
Query: 76 QPGC--------VYGFTDAADGCKRLSWTFEKEGTKLEWRWKC---GPAPNSKKVPAGIL 124
G + T G +L ++EK + +R P P +V ++
Sbjct: 81 PSGSGASDEGEFTFQLTPERPGRPQLQLSYEKVQKDISFRLGVVDLQPVPEPTEVIRELI 140
Query: 125 DFLMDANIRLSA----------------EKCLAQSERFKNEKLEFESAIYAKFLGVLNSK 168
++ + RL A + + ER+ K E +Y++F+ VLN K
Sbjct: 141 THGLEQSSRLQASNQHLLEENQKLRREQQHITEEMERYVKGKEALERDLYSRFVLVLNEK 200
Query: 169 KSKLRELQDKL 179
K+KLR LQ ++
Sbjct: 201 KAKLRALQQRV 211
>gi|426230090|ref|XP_004009114.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Ovis aries]
Length = 332
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 44/251 (17%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAW---LCNASEEQVKDRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW +C + Q D A+ + + ++ A +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWTGTVCESDISQEADDMAMEKEKYVDELRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDF 126
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 77 GAGPTDTYKFNFSKESHH---FSFEKNLKDVSFRLGSFNLEKIASPAEVIRELICHCLDT 133
Query: 127 LMDA-----NIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRE 174
+ ++ +++ E+ L + E+ + K E+ +Y +F+ VLN KK+K+R
Sbjct: 134 IAESQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEAVETDLYKRFILVLNEKKAKIRS 193
Query: 175 LQDKLSK-QAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
L L++ Q + +++ + E +TD +DE TD+D +I S + P
Sbjct: 194 LHKLLNEVQELEKNIEHKMETPTCSEMTTDRDAVYDESTDED-------SEILSNPVLTP 246
Query: 228 ASRARGRKRIS 238
A+ R IS
Sbjct: 247 ATVRRDDSIIS 257
>gi|426230092|ref|XP_004009115.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Ovis aries]
Length = 334
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 44/251 (17%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAW---LCNASEEQVKDRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW +C + Q D A+ + + ++ A +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWTGTVCESDISQEADDMAMEKEKYVDELRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDF 126
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 77 GAGPTDTYKFNFSKESHH---FSFEKNLKDVSFRLGSFNLEKIASPAEVIRELICHCLDT 133
Query: 127 LMDA-----NIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRE 174
+ ++ +++ E+ L + E+ + K E+ +Y +F+ VLN KK+K+R
Sbjct: 134 IAESQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEAVETDLYKRFILVLNEKKAKIRS 193
Query: 175 LQDKLSK-QAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDITSTSIGVP 227
L L++ Q + +++ + E +TD +DE TD+D +I S + P
Sbjct: 194 LHKLLNEVQELEKNIEHKMETPTCSEMTTDRDAVYDESTDED-------SEILSNPVLTP 246
Query: 228 ASRARGRKRIS 238
A+ R IS
Sbjct: 247 ATVRRDDSIIS 257
>gi|156395836|ref|XP_001637316.1| predicted protein [Nematostella vectensis]
gi|156224427|gb|EDO45253.1| predicted protein [Nematostella vectensis]
Length = 957
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 45/205 (21%)
Query: 30 FDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADG 89
+++I +G N W S E++ A D + Y QQ V FT
Sbjct: 32 LEMTICNGENIWRGKVSPEEISSMAEAIDTELESYT---------QQ--MVKAFTGKRTD 80
Query: 90 CKRLSWTFEKEGTKLEWRWKCGPAPNSKKVPAGILDF-----------LMD---ANIRLS 135
+ + E +L++ WK A + K G +DF ++D + I
Sbjct: 81 TENFVYQTTIENNELKFYWKKQLA-DGVKFQLGCVDFSTVDTPRPMNMILDFAVSEITTL 139
Query: 136 AEKCLAQSE---RFKNE--------------KLEFESAIYAKFLGVLNSKKSKLRELQDK 178
+ + ++E R NE K+E ES +Y KF VLN KK+K+R+L+ +
Sbjct: 140 KREIVQKTEDNGRLANERRKAVKLLDECVKSKVELESDLYQKFAIVLNEKKAKIRQLKSQ 199
Query: 179 L--SKQAVMGDLQQEEEESTDETES 201
+ S V G +QE+ E T +S
Sbjct: 200 VEDSSSGVTGHDRQEQAEETGSNKS 224
>gi|340717972|ref|XP_003397447.1| PREDICTED: DNA repair protein XRCC4-like [Bombus terrestris]
Length = 304
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 150 KLEFESAIYAKFLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDD 209
K+ E +Y KF+ VLNSKK K++ELQD + K+ E+ E+ FD TD++
Sbjct: 156 KITMEQDLYKKFIVVLNSKKKKIKELQDAIKKK-----------ENVKES-VFDACTDEE 203
Query: 210 -KSEEEPAKDITSTSIGVPASRA 231
+ E+E KDI ST I V ++
Sbjct: 204 SEKEDETVKDI-STIIKVSKRKS 225
>gi|391852801|ref|NP_001254694.1| DNA repair protein XRCC4 [Callithrix jacchus]
gi|311705767|gb|ADQ01149.1| XRCC4 [Callithrix jacchus]
Length = 334
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 35/227 (15%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
+++ +W S F L +TDG +AW SE ++ + A +Y+ +L + +
Sbjct: 19 YLQVSWKKTLASGFVLILTDGHSAWTGTVSESEISEEADDMAMDKGKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFLMD--A 130
P VY F D + + + F+K + +R + N +V ++ + +D A
Sbjct: 79 GPADVYKF-DFSKETRH--FFFDKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIA 135
Query: 131 NIRLSAEKCLAQSERFKNE--------------KLEFESAIYAKFLGVLNSKKSKLRELQ 176
+ E ++ER + K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ENQAKNEHLQKENERLLRDWTDVQGRFEKCVSAKEALETDLYKRFILVLNEKKTKIRRLH 195
Query: 177 DKLSKQA--------VMGDLQQEEEESTDETESFDEGTDDDKSEEEP 215
+KL A G+ E + D +DE TD++ SE +P
Sbjct: 196 NKLLNGAQEPEKDIKFEGEAAIHSEMTADRDPVYDESTDEE-SENQP 241
>gi|350400387|ref|XP_003485817.1| PREDICTED: DNA repair protein XRCC4-like [Bombus impatiens]
Length = 304
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 14/78 (17%)
Query: 150 KLEFESAIYAKFLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDD 209
K+ E +Y KF+ VLNSKK K++ELQD + K+ E+ E+ FD TD++
Sbjct: 156 KITMEQDLYKKFIVVLNSKKKKIKELQDAIKKK-----------ENVKES-VFDACTDEE 203
Query: 210 -KSEEEPAKDITSTSIGV 226
+ E+E KDI ST I V
Sbjct: 204 SEKEDETVKDI-STIIKV 220
>gi|26343581|dbj|BAC35447.1| unnamed protein product [Mus musculus]
Length = 314
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERTIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKES---RHFSLEKELKDVSFRLGSFNLDKVSNSAEVIRDLICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|21312636|ref|NP_082288.1| DNA repair protein XRCC4 [Mus musculus]
gi|12845063|dbj|BAB26604.1| unnamed protein product [Mus musculus]
Length = 326
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERTIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKES---RHFSLEKELKDVSFRLGSFNLDKVSNSAEVIRDLICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|395825584|ref|XP_003786007.1| PREDICTED: DNA repair protein XRCC4 isoform 2 [Otolemur garnettii]
Length = 335
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 39/243 (16%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQISWEKTLESGFLITLTDGHSAWIGTVSELEISQEADDMAMEKEKYVDELRKALVSPA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDFLM 128
P Y F + + ++ EK + +R PA +++ LD +
Sbjct: 79 GPADEYKFNFSKESSH---FSLEKNLKDVSFRLVSFNLEKVASPAEVIRELICYCLDTIA 135
Query: 129 DA-----NIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
++ +++ E+ L + E++ K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ESQAKNEHLQKENERLLRDWNDVQGRFEKYVGAKEALETDLYERFILVLNEKKAKIRSLH 195
Query: 177 DKLSK-QAVMGDLQQEEEEST------DETESFDEGTDDDKSEEEPAKDITSTSIGVPAS 229
L++ Q + + E +T D ++DE TD++ +E +P S+ PA+
Sbjct: 196 KLLNEVQELEKNTGHARESATCSEMTADRDAAYDESTDEE-NENQP-----EPSVSAPAT 249
Query: 230 RAR 232
++
Sbjct: 250 ASK 252
>gi|395825582|ref|XP_003786006.1| PREDICTED: DNA repair protein XRCC4 isoform 1 [Otolemur garnettii]
Length = 333
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 109/243 (44%), Gaps = 39/243 (16%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W +S F +++TDG +AW+ SE ++ A +Y+ +L + +
Sbjct: 19 FLQISWEKTLESGFLITLTDGHSAWIGTVSELEISQEADDMAMEKEKYVDELRKALVSPA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDFLM 128
P Y F + + ++ EK + +R PA +++ LD +
Sbjct: 79 GPADEYKFNFSKESSH---FSLEKNLKDVSFRLVSFNLEKVASPAEVIRELICYCLDTIA 135
Query: 129 DA-----NIRLSAEKCL-------AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
++ +++ E+ L + E++ K E+ +Y +F+ VLN KK+K+R L
Sbjct: 136 ESQAKNEHLQKENERLLRDWNDVQGRFEKYVGAKEALETDLYERFILVLNEKKAKIRSLH 195
Query: 177 DKLSK-QAVMGDLQQEEEEST------DETESFDEGTDDDKSEEEPAKDITSTSIGVPAS 229
L++ Q + + E +T D ++DE TD++ +E +P S+ PA+
Sbjct: 196 KLLNEVQELEKNTGHARESATCSEMTADRDAAYDESTDEE-NENQP-----EPSVSAPAT 249
Query: 230 RAR 232
++
Sbjct: 250 ASK 252
>gi|148668660|gb|EDL00979.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_b [Mus musculus]
Length = 292
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERTIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKES---RHFSLEKELKDVSFRLGSFNLDKVSNSAEVIRELICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|407262061|ref|XP_003945985.1| PREDICTED: DNA repair protein XRCC4 [Mus musculus]
Length = 314
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERTIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKES---RHFSLEKELKDVSFRLGSFNLDKVSNSAEVIRELICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|44888525|sp|Q924T3.1|XRCC4_MOUSE RecName: Full=DNA repair protein XRCC4; AltName: Full=X-ray repair
cross-complementing protein 4
gi|15054474|dbj|BAB62316.1| XRCC4 [Mus musculus]
gi|19343718|gb|AAH25538.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Mus musculus]
Length = 326
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERAIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKALV- 75
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 76 --PGSGAAGTYKFLFSKESQH---FSLEKELKDVSFRLGSFNLDKVSNSAEVIRELICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|148668659|gb|EDL00978.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_a [Mus musculus]
Length = 326
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERTIGSGFVITLTDGHSAWTATVSELEISQEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKES---RHFSLEKELKDVSFRLGSFNLDKVSNSAEVIRELICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|449514777|ref|XP_002190026.2| PREDICTED: DNA repair protein XRCC4 [Taeniopygia guttata]
Length = 217
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 26/192 (13%)
Query: 13 PHATDPIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLA 68
P AT F++ +W + F L ++D W SE + AA + +Y+ +L
Sbjct: 14 PEAT--YFLQVSWEKDLGTGFGLLLSDCQCVWTGTVSESDISTEAADIEMDREKYVGELR 71
Query: 69 ERYLGFQQPGCVYGFTDAADGCKRL-SWTFE---KEGTKLEWRWKCGPAPNSKKVPAGIL 124
+ + ++ Y F + D ++ +++E K+G+ K PN +V ++
Sbjct: 72 KALIAGEESAGKYNFVISRDEQNKVCHFSYERNLKDGSFRLGSLKLQEVPNPAEVMKELI 131
Query: 125 DFLMDANIRLSA--EKCLAQSER-FKN-------------EKLEFESAIYAKFLGVLNSK 168
+ +D+ +L A E ++ER F N K + E+ +Y++F+ VLN K
Sbjct: 132 GYCLDSLGKLQAKTEDLQRENERLFSNWSDVEKRLEKCVEAKEDLEADLYSRFVLVLNEK 191
Query: 169 KSKLRELQDKLS 180
K+K+R LQ LS
Sbjct: 192 KAKIRNLQKLLS 203
>gi|26353252|dbj|BAC40256.1| unnamed protein product [Mus musculus]
Length = 326
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 38/210 (18%)
Query: 18 PIFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGF 74
P F++ +W S F +++TDG +AW SE ++ A +YI + L
Sbjct: 17 PYFLQVSWERAIGSGFVITLTDGHSAWTATVSELEISPEADDMAMEKGKYIDELRKAL-- 74
Query: 75 QQPGC----VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPAGILDFL 127
PG Y F + + ++ EKE + +R + NS +V ++ +
Sbjct: 75 -VPGSGAAGTYKFLFSKESQH---FSLEKELKDVSFRLGSFNLDKVSNSAEVIRELICYC 130
Query: 128 MDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVLNSKKSK 171
+D A+ Q E RF+ + K E+ +Y +F+ VLN KK+K
Sbjct: 131 LDTITEKQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALEADLYQRFILVLNEKKTK 190
Query: 172 LRELQDKLSKQAVMGDLQQEEEESTDETES 201
+R L ++ ++QQ EE + E E+
Sbjct: 191 IRSL------HKLLNEVQQLEESTKPEREN 214
>gi|440899212|gb|ELR50548.1| DNA repair protein XRCC4 [Bos grunniens mutus]
Length = 333
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 57/258 (22%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAW---LCNASEEQVKDRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW +C + Q D A+ + + ++ A +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWTGTVCESDISQEADDMAMEKEKYVDELRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDF 126
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 77 GAGPTDTYKFNFSKESH---YFSFEKNLKDVSFRLGSFKLEKIASPAEVIRELICHCLDT 133
Query: 127 LMDA-------------------NIRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
+ ++ +I+ EKC++ E E+ +Y +F+ VLN
Sbjct: 134 IAESQAKNEHLQKENERLLRDWNDIQGRFEKCVSAKE-------AVETDLYKRFILVLNE 186
Query: 168 KKSKLRELQDKLSK-QAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDIT 220
KK+K+R L L++ Q + +++ + E +TD +DE TD+D E P +
Sbjct: 187 KKAKIRSLHKLLNEVQELEKNIEHKMETPTCSEMTTDRDAIYDESTDEDS--EIP----S 240
Query: 221 STSIGVPASRARGRKRIS 238
+ S+ PA+ R IS
Sbjct: 241 NPSVLTPATVRRDDSIIS 258
>gi|169642604|gb|AAI60439.1| LOC100127743 protein [Xenopus (Silurana) tropicalis]
Length = 262
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 141 AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKL 179
AQ E+F N K E E +Y +F VLN KK+K+R L++KL
Sbjct: 90 AQLEKFVNGKEELERDLYTRFTCVLNEKKAKIRSLKEKL 128
>gi|125991932|ref|NP_001075084.1| DNA repair protein XRCC4 [Bos taurus]
gi|124829011|gb|AAI33434.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Bos taurus]
gi|296485062|tpg|DAA27177.1| TPA: X-ray repair cross complementing protein 4 [Bos taurus]
Length = 333
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 109/258 (42%), Gaps = 57/258 (22%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAW---LCNASEEQVKDRAALWDQPVTEYIKLAERYLG 73
F++ W S F +++TDG +AW +C + Q D A+ + + ++ A +
Sbjct: 19 FLQVAWEKTLGSGFVITLTDGQSAWTGTVCESDISQEADDMAMEKEKYVDELRKA--LVS 76
Query: 74 FQQPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWK-------CGPAPNSKKVPAGILDF 126
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 77 GAGPTDTYKFNFSKESH---YFSFEKNLKDVSFRLGSFKLEKIASPAEVIRELICHCLDT 133
Query: 127 LMDA-------------------NIRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNS 167
+ ++ +I+ EKC++ E E+ +Y +F+ VLN
Sbjct: 134 IAESQAKNEHLQKENERLLRDWNDIQGRFEKCVSAKE-------AVETDLYKRFILVLNE 186
Query: 168 KKSKLRELQDKLSK-QAVMGDLQQE------EEESTDETESFDEGTDDDKSEEEPAKDIT 220
KK+K+R L L++ Q + +++ + E +TD +DE TD+D E P +
Sbjct: 187 KKAKIRSLHKLLNEVQELEKNIEHKMETPTCSEMTTDRDAIYDESTDEDS--EIP----S 240
Query: 221 STSIGVPASRARGRKRIS 238
+ S+ PA+ R IS
Sbjct: 241 NPSVLTPATVRRDDSIIS 258
>gi|385261713|ref|ZP_10039830.1| ABC-2 family transporter protein [Streptococcus sp. SK643]
gi|385192435|gb|EIF39840.1| ABC-2 family transporter protein [Streptococcus sp. SK643]
Length = 399
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
SKL ELQ +L++ A +L QE+E+ ++T +F E D+ K ++ + I +T++G
Sbjct: 123 SKLNELQAQLNRSA--ANLSQEQEKRLEQTVNFTEKIDESKENKKMIQTIAATAVG 176
>gi|307215086|gb|EFN89893.1| hypothetical protein EAI_04039 [Harpegnathos saltator]
Length = 151
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 153 FESAIYAKFLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSE 212
E +Y KFL +LNSKK K+RELQ L+K + + +E+TDE+E D++KS+
Sbjct: 5 MEKNLYKKFLLLLNSKKQKIRELQKALNK----AERKPIYDETTDESE-----LDENKSD 55
Query: 213 EEPAKDITSTSIGVPASRAR 232
E K + T+I R R
Sbjct: 56 TEDNK-VQETNIKSNNIRKR 74
>gi|307191359|gb|EFN74960.1| hypothetical protein EAG_01275 [Camponotus floridanus]
Length = 140
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 126 FLMDANIRLSAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKL 179
+L ++NI+L+ + E+ N K + E +YAKFL +LN+KK+K+RELQ L
Sbjct: 92 YLNESNIKLTTD-----IEQMINIKDKMEKDLYAKFLLLLNAKKNKIRELQKAL 140
>gi|345304720|ref|XP_001511773.2| PREDICTED: DNA repair protein XRCC4-like [Ornithorhynchus anatinus]
Length = 303
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 5/110 (4%)
Query: 127 LMDANIRLSAE--KCLAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKLSK-QA 183
L N RL ++ K Q E++ N K E+ +Y +F+ VLN KK+K+R LQ +++ QA
Sbjct: 114 LQKENERLLSDWNKIQEQLEKYVNAKEVLEADLYNRFVLVLNEKKAKIRSLQKLINEGQA 173
Query: 184 VMGDLQQEEEESTDETESFD-EGTDDDKSEEEPAKDITSTSIGVPASRAR 232
D Q E + + S + +G D+ ++EE +++G PA+ +R
Sbjct: 174 PEKDTQSERDMAPKVQNSPERDGVYDETTDEESENKSEPSAVG-PATSSR 222
>gi|405965114|gb|EKC30529.1| DNA repair protein XRCC4 [Crassostrea gigas]
Length = 541
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 75/196 (38%), Gaps = 44/196 (22%)
Query: 30 FDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADG 89
F LSI+DG W E+ +++ +K + L C Y
Sbjct: 30 FLLSISDGSKVWKGKFDEDDIENMRKTLKLDYESLLKKTKDALT-----CEYS------- 77
Query: 90 CKRLSWTFEKEGTKLEWRWK-------------CG--PAPNSKKVPAGILDFLMDANI-- 132
LS+ ++ + E++W C PA + K ILD +D N
Sbjct: 78 -SGLSYEYKLNSQRTEFQWHYAPDEDITYMLGSCAVEPARDPSKSMCEILDHCIDRNQEM 136
Query: 133 ------------RLSAEKC--LAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDK 178
R+S E+ L + E+ K E E +Y+KF+ VLNSKK K+R+L+
Sbjct: 137 KERLSAVQTDYDRISQERANALKRLEKCVVAKEELEKELYSKFVDVLNSKKEKIRQLKSN 196
Query: 179 LSKQAVMGDLQQEEEE 194
+ + E+E
Sbjct: 197 YANGDSLAGTSHTEQE 212
>gi|195997741|ref|XP_002108739.1| hypothetical protein TRIADDRAFT_52000 [Trichoplax adhaerens]
gi|190589515|gb|EDV29537.1| hypothetical protein TRIADDRAFT_52000 [Trichoplax adhaerens]
Length = 337
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 1 METRQTCLKLEIPHATDPIFVKGTWFQSHFD----LSITDGLNAWLCNASEEQVKDRAAL 56
ME + C I A ++ +W D L +TDG +AW ++ A
Sbjct: 1 MEEKYLC---RIEAAGQKYYLMTSWENDDVDQLCKLFLTDGQSAWHTVVTDGVANRLARS 57
Query: 57 WDQPVTEYIKLAERYLGFQQPGCV---YGFTDAAD-GCKRLSWT--FEKEGTKLEW-RWK 109
+ EY+K ++ +G + D +W E K + + K
Sbjct: 58 VQMDLHEYLKQTKKAFTANSSANSNFHFGVSLLPDHNTVEFAWKKYLRSEDMKFQLGKLK 117
Query: 110 CGPAPNSKKVPAGILDF--------------LMDANIRLSAEKC--LAQSERFKNEKLEF 153
+ K + + + DF L N RLS+E+ L E F K
Sbjct: 118 MAAVTDPKAIISELFDFSLSQISNLKMNIASLNSTNERLSSERAESLKNLEEFVVTKENL 177
Query: 154 ESAIYAKFLGVLNSKKSKLRELQDKL 179
E +Y KF+ VLNSKK+K+R L +++
Sbjct: 178 EVDMYGKFIRVLNSKKNKIRTLTNQV 203
>gi|418977506|ref|ZP_13525323.1| putative membrane protein [Streptococcus mitis SK575]
gi|383349842|gb|EID27761.1| putative membrane protein [Streptococcus mitis SK575]
Length = 399
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGV 226
SKL ELQD+L++ A +L QE+E+ ++T +F E D+ K ++ + + +G+
Sbjct: 123 SKLNELQDQLNRSA--ANLSQEQEKRLEQTVNFTEKIDESKENKKMIQTFAAAGLGL 177
>gi|419766248|ref|ZP_14292456.1| ABC-2 family transporter protein [Streptococcus mitis SK579]
gi|383354310|gb|EID31882.1| ABC-2 family transporter protein [Streptococcus mitis SK579]
Length = 399
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGV 226
SKL ELQD+L++ A +L QE+E+ ++T +F E D+ K ++ + + +G+
Sbjct: 123 SKLNELQDQLNRSA--ANLSQEQEKRLEQTVNFTEKIDESKENKKMIQTFAAAGLGL 177
>gi|289168630|ref|YP_003446899.1| ABC transporter permease, Na+ export [Streptococcus mitis B6]
gi|288908197|emb|CBJ23039.1| ABC transporter permease, Na+ export [Streptococcus mitis B6]
Length = 399
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIGV 226
SKL ELQD+L++ A +L QE+E+ ++T +F E D+ K ++ + + +G+
Sbjct: 123 SKLNELQDQLNRSA--ANLSQEQEKRLEQTVNFTEKIDESKENKKMIQTFAAAGLGL 177
>gi|410476736|ref|YP_006743495.1| replication initiator protein A N-terminus [Streptococcus
pneumoniae gamPNI0373]
gi|444386992|ref|ZP_21185018.1| replication initiator protein A [Streptococcus pneumoniae
PCS125219]
gi|444389552|ref|ZP_21187467.1| replication initiator protein A [Streptococcus pneumoniae PCS70012]
gi|444392432|ref|ZP_21190159.1| replication initiator protein A [Streptococcus pneumoniae PCS81218]
gi|444394485|ref|ZP_21192036.1| replication initiator protein A [Streptococcus pneumoniae PNI0002]
gi|444397792|ref|ZP_21195275.1| replication initiator protein A [Streptococcus pneumoniae PNI0006]
gi|444400421|ref|ZP_21197823.1| replication initiator protein A [Streptococcus pneumoniae PNI0007]
gi|444402867|ref|ZP_21200015.1| replication initiator protein A [Streptococcus pneumoniae PNI0008]
gi|444405897|ref|ZP_21202738.1| replication initiator protein A [Streptococcus pneumoniae PNI0009]
gi|444407406|ref|ZP_21204073.1| replication initiator protein A [Streptococcus pneumoniae PNI0010]
gi|444417869|ref|ZP_21213871.1| replication initiator protein A [Streptococcus pneumoniae PNI0360]
gi|444419601|ref|ZP_21215451.1| replication initiator protein A [Streptococcus pneumoniae PNI0427]
gi|406369681|gb|AFS43371.1| replication initiator protein A N-terminus [Streptococcus
pneumoniae gamPNI0373]
gi|444254202|gb|ELU60648.1| replication initiator protein A [Streptococcus pneumoniae
PCS125219]
gi|444256015|gb|ELU62353.1| replication initiator protein A [Streptococcus pneumoniae PCS70012]
gi|444259727|gb|ELU66036.1| replication initiator protein A [Streptococcus pneumoniae PNI0002]
gi|444260449|gb|ELU66757.1| replication initiator protein A [Streptococcus pneumoniae PNI0006]
gi|444263396|gb|ELU69572.1| replication initiator protein A [Streptococcus pneumoniae PCS81218]
gi|444265715|gb|ELU71707.1| replication initiator protein A [Streptococcus pneumoniae PNI0008]
gi|444266398|gb|ELU72353.1| replication initiator protein A [Streptococcus pneumoniae PNI0007]
gi|444271002|gb|ELU76753.1| replication initiator protein A [Streptococcus pneumoniae PNI0010]
gi|444271803|gb|ELU77548.1| replication initiator protein A [Streptococcus pneumoniae PNI0009]
gi|444282444|gb|ELU87706.1| replication initiator protein A [Streptococcus pneumoniae PNI0360]
gi|444286504|gb|ELU91482.1| replication initiator protein A [Streptococcus pneumoniae PNI0427]
Length = 176
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 138 KCLAQSERFKNEKLEFESAIY-----AKFLGVLNSKKSKLRELQDKLSKQAVMGDLQQEE 192
K L +SER+KN KLE + AIY + + +L KSKL ++ L + ++ ++QQ
Sbjct: 20 KLLFESERYKNMKLEVDGAIYLIYSNSNLMALLGCSKSKLLSIKKTLREYGLIDEVQQSS 79
Query: 193 EE 194
E
Sbjct: 80 SE 81
>gi|47226731|emb|CAG07890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 101
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 22/99 (22%)
Query: 112 PAPNSKKVPAGILDFLMDANIRLSAEKC--LAQSERFKNE--------------KLEFES 155
PAP+ ++ ++ + L +E C L +++R K E K E
Sbjct: 8 PAPDPVELNRDMIGQSLKRTADLKSENCKLLKENDRLKQEHRRILQELEQQVLDKEAMER 67
Query: 156 AIYAKFLGVLNSKKSKLRELQDKLSKQAVMGDLQQEEEE 194
+Y++F+ VLN KK+K+R LQD L + LQQ EEE
Sbjct: 68 ELYSRFVMVLNEKKAKIRGLQDTLHQ------LQQAEEE 100
>gi|307708143|ref|ZP_07644610.1| ABC transporter membrane-spanning permease - Na+ export
[Streptococcus mitis NCTC 12261]
gi|307615589|gb|EFN94795.1| ABC transporter membrane-spanning permease - Na+ export
[Streptococcus mitis NCTC 12261]
Length = 399
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 170 SKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITSTSIG 225
SKL ELQD+L++ A +L QE+E+ +T +F E D+ K ++ + + +G
Sbjct: 123 SKLNELQDQLNRSA--ANLSQEQEKRLGQTVNFTEKIDESKENKKMIQTFAAAGLG 176
>gi|344272698|ref|XP_003408168.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Loxodonta
africana]
Length = 335
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W S FD+ +TDG + W S ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLGSGFDVILTDGQSVWTGTVSASEISREADDMAMEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 79 GPADAYKFNFSKESSH---FSFEKNLKNVSFRLGSFNLEKVSSPAEVIRELICDCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNQHLQKENERLLRDWNDVQRRFEKCVSAKETL-------EADLYKRFILVLNEKK 188
Query: 170 SKLRELQDKLS 180
+K+R L+ LS
Sbjct: 189 AKIRSLRKLLS 199
>gi|344272700|ref|XP_003408169.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Loxodonta
africana]
Length = 333
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 20 FVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI-KLAERYLGFQ 75
F++ +W S FD+ +TDG + W S ++ A +Y+ +L + +
Sbjct: 19 FLQVSWEKTLGSGFDVILTDGQSVWTGTVSASEISREADDMAMEKEKYVDELRKALVSGA 78
Query: 76 QPGCVYGFTDAADGCKRLSWTFEKEGTKLEWRWKC-------GPAPNSKKVPAGILD--- 125
P Y F + + ++FEK + +R PA +++ LD
Sbjct: 79 GPADAYKFNFSKESSH---FSFEKNLKNVSFRLGSFNLEKVSSPAEVIRELICDCLDTIA 135
Query: 126 -------FLMDANIRL---------SAEKCLAQSERFKNEKLEFESAIYAKFLGVLNSKK 169
L N RL EKC++ E E+ +Y +F+ VLN KK
Sbjct: 136 ENQAKNQHLQKENERLLRDWNDVQRRFEKCVSAKETL-------EADLYKRFILVLNEKK 188
Query: 170 SKLRELQDKLS 180
+K+R L+ LS
Sbjct: 189 AKIRSLRKLLS 199
>gi|291241228|ref|XP_002740516.1| PREDICTED: X-ray repair complementing defective repair in Chinese
hamster cells 4-like [Saccoglossus kowalevskii]
Length = 346
Score = 37.0 bits (84), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)
Query: 30 FDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADG 89
F L +T+G +AW + + V+ A + +YI + +Q FT G
Sbjct: 36 FRLRLTNGKDAWQVDIDLDTVEGLAKTCGMELEDYI------VEIKQ-----AFTRENLG 84
Query: 90 CKRLSWTFEK-EGTKLEWRWKCGPAPNSKKVPAG--ILDFLMDA---------------- 130
+ + +K +G +E+ WK + K G +LD + D
Sbjct: 85 VTKFEYHVKKYKGQSIEFSWKKVMEADKIKYQLGSVVLDAIKDPVKTTTSVYDNAIETMK 144
Query: 131 ------------NIRLSAEKC--LAQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ 176
N RLS E+ L + E+ +K E+ +Y KF +N KK+K+R L
Sbjct: 145 ELKNSISTLQTNNDRLSKERASALKRLEKCVEQKEAMENDLYGKFQVTINDKKAKIRHLT 204
Query: 177 DKLSKQAVMGDLQQEEEESTDETESFDEGTDDDK 210
+L K + + ST +D+DK
Sbjct: 205 SELDKVKRLAVTSSSQRASTSHDMEVGADSDNDK 238
>gi|55741859|ref|NP_001007000.1| DNA repair protein XRCC4 [Rattus norvegicus]
gi|54035491|gb|AAH83848.1| X-ray repair complementing defective repair in Chinese hamster
cells 4 [Rattus norvegicus]
gi|149058986|gb|EDM09993.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_a [Rattus norvegicus]
gi|149058987|gb|EDM09994.1| X-ray repair complementing defective repair in Chinese hamster
cells 4, isoform CRA_a [Rattus norvegicus]
Length = 323
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 38/216 (17%)
Query: 12 IPHATDP---IFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYI 65
I A++P F++ +W S F +++TDG +AW SE ++ A +Y+
Sbjct: 8 ISLASEPNVTYFLQVSWEGTIGSGFVITLTDGHSAWTAKVSESEIAQEADDMAMEQEKYM 67
Query: 66 KLAERYLGFQQPGC-VYGFTDAADGCKRLSWTFEKEGTKLEWR---WKCGPAPNSKKVPA 121
R L + Y F + D ++ EKE + +R + N +V
Sbjct: 68 DELRRALVPESGAAGAYKFIFSKDTQH---FSLEKELKDVSFRLGSFNLDKVTNPTEVIR 124
Query: 122 GILDFLMDANIRLSAEKCLAQSE-------------RFK---NEKLEFESAIYAKFLGVL 165
++ + +D A+ Q E RF+ ++K E+ +Y +F+ VL
Sbjct: 125 ELICYCLDTIAEKQAKNEHLQKENERLLRDWTDVQGRFEKCVSDKEALEADLYQRFILVL 184
Query: 166 NSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETES 201
N KK+K+R L + ++QQ E+ + E E+
Sbjct: 185 NEKKTKIRSL---------LSEVQQLEKSTKPERET 211
>gi|417915984|ref|ZP_12559577.1| putative membrane protein [Streptococcus mitis bv. 2 str. SK95]
gi|342831607|gb|EGU65921.1| putative membrane protein [Streptococcus mitis bv. 2 str. SK95]
Length = 399
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 163 GVLNSKKSKLRELQDKLSKQAVMGDLQQEEEESTDETESFDEGTDDDKSEEEPAKDITST 222
G+ + +KL ELQ +L++ A +L QE+E+ +T F E TD+ K ++ + I +
Sbjct: 116 GIKLAVTNKLNELQYQLNRSA--ANLSQEQEKRLSQTVDFTEKTDESKENKKIIQTIAAA 173
Query: 223 SIG 225
+G
Sbjct: 174 GLG 176
>gi|339275544|dbj|BAK48643.1| envelop protein [Human immunodeficiency virus]
Length = 855
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 32 LSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCK 91
+++T+ N W N E+ +D +LWDQ + +KL P CV + K
Sbjct: 86 VNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLT--------PLCVTLNCTDVNATK 137
Query: 92 RLSWTFEK 99
SWT EK
Sbjct: 138 NNSWTMEK 145
>gi|334305528|gb|AEG76888.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305526|gb|AEG76887.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305522|gb|AEG76885.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305524|gb|AEG76886.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305516|gb|AEG76882.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305514|gb|AEG76881.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305512|gb|AEG76880.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305508|gb|AEG76878.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305490|gb|AEG76869.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305492|gb|AEG76870.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305494|gb|AEG76871.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305496|gb|AEG76872.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305498|gb|AEG76873.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305500|gb|AEG76874.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305510|gb|AEG76879.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305520|gb|AEG76884.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305518|gb|AEG76883.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305506|gb|AEG76877.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|334305502|gb|AEG76875.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305504|gb|AEG76876.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
>gi|339275542|dbj|BAK48642.1| envelop protein [Human immunodeficiency virus]
Length = 850
Score = 36.6 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 32 LSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCK 91
+++T+ N W N E+ +D +LWDQ + +KL P CV + K
Sbjct: 86 VNVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLT--------PLCVTLNCTDVNATK 137
Query: 92 RLSWTFEK 99
SWT EK
Sbjct: 138 NNSWTMEK 145
>gi|334305530|gb|AEG76889.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305532|gb|AEG76890.1| envelope glycoprotein [Human immunodeficiency virus 1]
gi|334305534|gb|AEG76891.1| envelope glycoprotein [Human immunodeficiency virus 1]
Length = 853
Score = 36.6 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 33 SITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQQPGCVYGFTDAADGCKR 92
++T+ N W + E+ +D +LWDQ + +KL + F V G T+ R
Sbjct: 87 NVTEDFNVWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVTFNCTNVVNGTTNTT----R 142
Query: 93 LSWTFEKEG 101
SW KEG
Sbjct: 143 DSWQMMKEG 151
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.314 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,835,681,332
Number of Sequences: 23463169
Number of extensions: 159614857
Number of successful extensions: 847769
Number of sequences better than 100.0: 636
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 467
Number of HSP's that attempted gapping in prelim test: 843960
Number of HSP's gapped (non-prelim): 2808
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 75 (33.5 bits)