Query 047048
Match_columns 240
No_of_seqs 108 out of 121
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ik9_A DNA repair protein XRCC 100.0 7E-51 2.4E-55 355.6 20.2 183 5-190 3-210 (213)
2 3w03_C DNA repair protein XRCC 100.0 2.2E-31 7.5E-36 227.3 20.0 146 5-153 23-178 (184)
3 3q4f_C DNA repair protein XRCC 100.0 5.4E-29 1.9E-33 210.5 16.9 141 5-148 32-182 (186)
4 3mud_A DNA repair protein XRCC 100.0 8.1E-28 2.8E-32 203.3 18.2 147 5-154 6-166 (175)
5 1z56_A Ligase interacting fact 99.9 4.1E-25 1.4E-29 193.9 1.4 147 31-181 52-232 (246)
6 2qm4_A Non-homologous END-join 97.3 0.0094 3.2E-07 52.3 15.8 102 9-114 17-129 (235)
7 2kw3_C Regulatory factor X-ass 73.5 2.2 7.7E-05 29.7 2.6 22 161-182 17-48 (62)
8 1zxa_A CGMP-dependent protein 54.9 20 0.0007 25.4 4.7 27 160-186 28-55 (67)
9 1zxa_A CGMP-dependent protein 39.3 17 0.00059 25.8 2.3 27 157-183 12-38 (67)
10 3q0x_A Centriole protein; cent 38.6 1.9E+02 0.0065 24.9 13.0 96 29-127 64-172 (228)
11 2pih_A Protein YMCA; regulate 32.5 1.2E+02 0.004 24.0 6.6 47 138-185 41-88 (151)
12 3azd_A Short alpha-tropomyosin 31.2 18 0.00061 22.6 1.2 20 167-186 8-27 (37)
13 2l5g_B Putative uncharacterize 28.4 75 0.0026 20.5 3.8 19 170-188 23-41 (42)
14 3lcn_C MRNA transport factor G 27.8 43 0.0015 19.8 2.3 15 169-183 12-26 (29)
15 3nmd_A CGMP dependent protein 23.2 2.1E+02 0.0071 20.4 6.4 22 163-184 47-68 (72)
16 1d7m_A Cortexillin I; coiled-c 22.1 2.1E+02 0.0072 21.4 5.8 37 144-181 21-57 (101)
17 3tso_C RAB11 family-interactin 20.8 1.1E+02 0.0039 22.0 3.9 21 162-182 27-47 (75)
No 1
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=100.00 E-value=7e-51 Score=355.56 Aligned_cols=183 Identities=22% Similarity=0.346 Sum_probs=161.9
Q ss_pred ceeEEeecCCCCCc-EEEEEEEeC---CeeEEEEecCCcceEEeecHHHHHHHhhccCCCHHHHHHHHHHHhcCC-CCCc
Q 047048 5 QTCLKLEIPHATDP-IFVKGTWFQ---SHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYLGFQ-QPGC 79 (240)
Q Consensus 5 ~t~~Ri~~~~~~~~-~~lkv~w~~---s~f~L~~TDG~~~w~g~vs~~~i~~rA~~~~~s~eey~~~l~~aL~~~-~p~~ 79 (240)
++|+||+++++|+. |||+|+|.+ ++|.|++|||++||+|+|++++|..+|++|+|++++|+++|++||+++ +|++
T Consensus 3 ~~v~ri~~s~~~~~~~~l~~~w~~~~~~~f~l~~TdG~~~w~g~v~~~~i~~rAk~~~~~~eey~~~l~~aL~~~~~p~~ 82 (213)
T 1ik9_A 3 RKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPAD 82 (213)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHCC----CC
T ss_pred ceeEEeeecCCCCCeEEEEEEEcCCCCCceEEEEecCCCceEEEecHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCc
Confidence 68999999998755 999999965 689999999999999999999999999999999999999999999888 9999
Q ss_pred eeeEEecCCCCceEEEEEEeeceeEEEEE---eeecCCCCcchHHHHHHHHhhH-------hhhhhH---------HHHH
Q 047048 80 VYGFTDAADGCKRLSWTFEKEGTKLEWRW---KCGPAPNSKKVPAGILDFLMDA-------NIRLSA---------EKCL 140 (240)
Q Consensus 80 ~y~~~~~~~~~~~l~~t~eK~~~~I~~rl---~l~~~~d~~e~~~eL~d~l~~~-------n~~L~~---------E~l~ 140 (240)
.|.|+..++ .++|||+|.+++|+||| +|.+++||.+++++|||||+.+ |.+|+. ++++
T Consensus 83 ~~~~~~~~~---~l~~t~rK~~~~I~~rLGsi~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~ 159 (213)
T 1ik9_A 83 VYTFNFSKE---SAYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQ 159 (213)
T ss_dssp CEEEEEETT---TTEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecCc---eeEEEEEEecCceEEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987664 38999999999999995 5667899999889999998665 555542 3789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHHHhhhcccch
Q 047048 141 AQSERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQ-DKLSKQAVMGDLQQ 190 (240)
Q Consensus 141 ~qlEe~v~~K~e~E~~Ly~KFv~vLNEKK~KIRelq-~~L~~~~~~~~~~~ 190 (240)
+|||+||++|++||.+||+||++||||||+|||+|| ++|+.++++++..+
T Consensus 160 ~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~~ 210 (213)
T 1ik9_A 160 GRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999 88888888877654
No 2
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=99.98 E-value=2.2e-31 Score=227.33 Aligned_cols=146 Identities=20% Similarity=0.321 Sum_probs=130.2
Q ss_pred ceeEEeecCCCCCc-EEEEEEE---eCCeeEEEEecCCcceEEeecHHHHHHHhhccCCCHHHHHHHHHHHh-cCCCCCc
Q 047048 5 QTCLKLEIPHATDP-IFVKGTW---FQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYL-GFQQPGC 79 (240)
Q Consensus 5 ~t~~Ri~~~~~~~~-~~lkv~w---~~s~f~L~~TDG~~~w~g~vs~~~i~~rA~~~~~s~eey~~~l~~aL-~~~~p~~ 79 (240)
++|.||+++++|+. |||+|+| +|++|.|++|||.++|+|+|++++|.++|++|+|+.++|+++|++|| ++++|++
T Consensus 23 ~~~~~i~~~s~p~~~yflk~~W~~~l~sgF~L~LTDG~sAW~G~vSe~~I~~~A~~~~m~~e~Yv~eL~kAl~~~~~~~~ 102 (184)
T 3w03_C 23 RKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPAD 102 (184)
T ss_dssp EEEEEECBTTCTTSCEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHSSCCCSSC
T ss_pred cceEEEEecCCCCceEEEEEEeccCCCCceEEEEECCCceeeEEcCHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCc
Confidence 58999999999998 9999999 67899999999999999999999999999999999999999999999 5888999
Q ss_pred eeeEEecCCCCceEEEEEEeeceeEEEEE---eeecCCCCcchHHHHHHHHhhHhhhhhH--HHHHHHHHHHHHHHHHH
Q 047048 80 VYGFTDAADGCKRLSWTFEKEGTKLEWRW---KCGPAPNSKKVPAGILDFLMDANIRLSA--EKCLAQSERFKNEKLEF 153 (240)
Q Consensus 80 ~y~~~~~~~~~~~l~~t~eK~~~~I~~rl---~l~~~~d~~e~~~eL~d~l~~~n~~L~~--E~l~~qlEe~v~~K~e~ 153 (240)
.|.|+++++. ++|+|+|.+.+|.|+| +|.+++||.+++++||+||++.+.+|+. +.++++.|++-.+-+..
T Consensus 103 ~Y~f~~s~e~---~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 103 VYTFNFSKES---CYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp CEEEEECTTT---CEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCccc---eEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988764 8899999999999995 6778999999999999999998888874 35667776666555443
No 3
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=210.52 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=124.2
Q ss_pred ceeEEeecCCCCCc-EEEEEEEe---CCeeEEEEecCCcceEEeecHHHHHHHhhccCCCHHHHHHHHHHHh-cCCCCCc
Q 047048 5 QTCLKLEIPHATDP-IFVKGTWF---QSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYL-GFQQPGC 79 (240)
Q Consensus 5 ~t~~Ri~~~~~~~~-~~lkv~w~---~s~f~L~~TDG~~~w~g~vs~~~i~~rA~~~~~s~eey~~~l~~aL-~~~~p~~ 79 (240)
++|.||+++++|+. |||+|+|. |+||.|++|||+++|+|+|++++|.+.|++++|..+.|+++|++|| ++..|+.
T Consensus 32 ~~v~~i~~~sep~~~yfLqvsW~~~lgsGF~i~LTDGqSaW~G~VS~~~Is~eAd~m~Me~e~YV~eL~KALv~~~~~~~ 111 (186)
T 3q4f_C 32 RKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPAD 111 (186)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHSSCCCSSC
T ss_pred hhhhheeecCCCCccEEEEEEeccCCCcceEEEEeCCcceeeeEECHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 47999999999888 99999994 5789999999999999999999999999999999999999999999 6778999
Q ss_pred eeeEEecCCCCceEEEEEEeeceeEEEEEe---eecCCCCcchHHHHHHHHhhHhhhhhH--HHHHHHHHHHHH
Q 047048 80 VYGFTDAADGCKRLSWTFEKEGTKLEWRWK---CGPAPNSKKVPAGILDFLMDANIRLSA--EKCLAQSERFKN 148 (240)
Q Consensus 80 ~y~~~~~~~~~~~l~~t~eK~~~~I~~rl~---l~~~~d~~e~~~eL~d~l~~~n~~L~~--E~l~~qlEe~v~ 148 (240)
.|.|+.++++ ++|+|+|.+++|+|+|| |.+++||.+++++||+||.+.-..|.+ +.|+++.+++.+
T Consensus 112 ~y~F~~S~e~---~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 112 VYTFNFSKES---CYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp CEEEEECTTT---CEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeccce---eEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999885 78889999999999985 668999999999999998776555553 255666665544
No 4
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=99.96 E-value=8.1e-28 Score=203.31 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=127.0
Q ss_pred ceeEEeecCCCCCc-EEEEEEEe---CCeeEEEEecCCcceEEeecHHHHHHHhhccCCCHHHHHHHHHHHh-cCCCCCc
Q 047048 5 QTCLKLEIPHATDP-IFVKGTWF---QSHFDLSITDGLNAWLCNASEEQVKDRAALWDQPVTEYIKLAERYL-GFQQPGC 79 (240)
Q Consensus 5 ~t~~Ri~~~~~~~~-~~lkv~w~---~s~f~L~~TDG~~~w~g~vs~~~i~~rA~~~~~s~eey~~~l~~aL-~~~~p~~ 79 (240)
++|.||+++++|+. |||+|+|. |+||.|++|||+++|+|+|++++|.+.|++++|..+.|+++|++|| ++..|+.
T Consensus 6 ~~~~~i~~~s~p~~~yfL~v~w~~~l~~gf~i~ltDG~saW~g~Vs~~~i~~eA~~~~me~e~Yv~el~kAl~~~~~~~~ 85 (175)
T 3mud_A 6 RKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPAD 85 (175)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESSCGGGEEEEEEECSSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCTTC
T ss_pred hhhhheeecCCCCceEEEEEeccccCCcceEEEEeCCcceeeeeeCHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 57999999999888 99999994 5789999999999999999999999999999999999999999999 6778999
Q ss_pred eeeEEecCCCCceEEEEEEeeceeEEEEEe---eecCCCCcchHHHHHHHHhhHhhhhh------HHHHHHHHHHHHHHH
Q 047048 80 VYGFTDAADGCKRLSWTFEKEGTKLEWRWK---CGPAPNSKKVPAGILDFLMDANIRLS------AEKCLAQSERFKNEK 150 (240)
Q Consensus 80 ~y~~~~~~~~~~~l~~t~eK~~~~I~~rl~---l~~~~d~~e~~~eL~d~l~~~n~~L~------~E~l~~qlEe~v~~K 150 (240)
.|.|++++++ .+++|+|.+.+++|+|| |.++++|.+++++||+++.+.-..|. .+++...-+++...-
T Consensus 86 ~~~f~~s~e~---~~~syek~lk~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~ 162 (175)
T 3mud_A 86 VYTFNFSKES---CYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMH 162 (175)
T ss_dssp CEEEEECTTT---CEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecChhH---HHHHHHHHHHHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999885 77888999999999984 66899999999999999877666664 234555555555555
Q ss_pred HHHH
Q 047048 151 LEFE 154 (240)
Q Consensus 151 ~e~E 154 (240)
.+++
T Consensus 163 ~eLD 166 (175)
T 3mud_A 163 QMLD 166 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 5
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-25 Score=193.85 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=46.1
Q ss_pred EEEEecCCcceEEeecHHHHH-HHhhcc-----CCCHHHHHHHHHHHhcCCCC------CceeeEEec-CCCCceEEEEE
Q 047048 31 DLSITDGLNAWLCNASEEQVK-DRAALW-----DQPVTEYIKLAERYLGFQQP------GCVYGFTDA-ADGCKRLSWTF 97 (240)
Q Consensus 31 ~L~~TDG~~~w~g~vs~~~i~-~rA~~~-----~~s~eey~~~l~~aL~~~~p------~~~y~~~~~-~~~~~~l~~t~ 97 (240)
.|++|+|++||+|+ +..|. .|++++ .++.++|.++|+.+|++..+ ...|.=+.. ...+..+++|+
T Consensus 52 ~LvaTEGe~py~~s--~~~i~~LR~k~~~n~~~~~~~~eW~~iL~~l~~~k~~~~~l~~~~~~~~w~~~iev~~~~~itm 129 (246)
T 1z56_A 52 KMLVSEGTGIFSKS--SFGINDLRIFTGENIDEESKKYVWYELLKMLTGHKVYIASLDEKVVFTKWTCRMQDDEVWKVVM 129 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCCcCccccc--ccchhheeeecccccccccchHHHHHHHHHHhcCCccccchhccccccccccCceeCCEEEEEE
Confidence 38999999999999 55566 799999 99999999999998876532 222321111 12345689999
Q ss_pred EeeceeEEEEEe-eecCCCCcchHHHHHHHHhhHhhhhh------------HHHHHHHHHHHHHHHHHHHHHHH------
Q 047048 98 EKEGTKLEWRWK-CGPAPNSKKVPAGILDFLMDANIRLS------------AEKCLAQSERFKNEKLEFESAIY------ 158 (240)
Q Consensus 98 eK~~~~I~~rl~-l~~~~d~~e~~~eL~d~l~~~n~~L~------------~E~l~~qlEe~v~~K~e~E~~Ly------ 158 (240)
|+++..|++||+ +.+.+++.+. ++||+|.....+.++ -..++.||++||.+|++|| +|+
T Consensus 130 rkri~~Itqrlg~ltL~~~~~~e-IdLFewA~~L~q~i~~ln~k~~~~E~si~~L~~qLeElv~~k~~~d-qLi~~RD~~ 207 (246)
T 1z56_A 130 ELESSAIIRKIAELTLHPVKKGE-IDLFEMADKLYKDICCVNDSYRNIKESDSSNRNRVEQLARERELLD-KLLETRDER 207 (246)
T ss_dssp ------------------------------CTTSGGGTTHHHHHHHHTTTTTTHHHHHHHHTTTTHHHHH-HHHHHTTTH
T ss_pred eehhhHHHhhheeEEeecCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcch
Confidence 999999999997 6677777664 699999554444443 1378999999999999999 999
Q ss_pred --HHHHHHHhchhHHHHHHHHHHHH
Q 047048 159 --AKFLGVLNSKKSKLRELQDKLSK 181 (240)
Q Consensus 159 --~KFv~vLNEKK~KIRelq~~L~~ 181 (240)
++|++||||||+|||+||++|..
T Consensus 208 tR~~fv~LLNEKK~KIR~qqrlL~s 232 (246)
T 1z56_A 208 TRAMMVTLLNEKKKKIRELHEILRQ 232 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTTTT
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999865
No 6
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=97.32 E-value=0.0094 Score=52.35 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=69.2
Q ss_pred EeecCCCCCcEEEEEEEeCCeeEEEEecCCcceEEeecHHHHHHHhhccCC----CHH----HHHHHHHHHh-cCCCCCc
Q 047048 9 KLEIPHATDPIFVKGTWFQSHFDLSITDGLNAWLCNASEEQVKDRAALWDQ----PVT----EYIKLAERYL-GFQQPGC 79 (240)
Q Consensus 9 Ri~~~~~~~~~~lkv~w~~s~f~L~~TDG~~~w~g~vs~~~i~~rA~~~~~----s~e----ey~~~l~~aL-~~~~p~~ 79 (240)
+|+.++. .||++.....+++.|.+||-.+.|+=+++...|-.||+.... +++ .|-..+..+| .+..|+
T Consensus 17 ~l~l~~~--~llvk~~ft~~sY~l~lTDL~~vW~E~l~~~~I~~Rak~lN~rl~i~~s~~~~~l~~ll~~aL~~~~~~~- 93 (235)
T 2qm4_A 17 WLQLAEN--SLLAKVFITKQGYALLVSDLQQVWHEQVDTSVVSQRAKELNKRLTAPPAAFLCHLDNLLRPLLKDAAHPS- 93 (235)
T ss_dssp EEECSSS--EEEEEEEEETTEEEEEEECSSCEEEEEECHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHCSCSCC-
T ss_pred EEeeCCC--CeEEEEEecCCcEEEEEEccchhceeecCHHHHHHHHHHhCcCCCCChhHhHHHHHHHHHHHHhcCCCCc-
Confidence 4555543 399999999999999999999999999999999999877665 554 4555566788 444444
Q ss_pred eeeEEecCCCCceEEEEEEeeceeEEEEE--eeecCC
Q 047048 80 VYGFTDAADGCKRLSWTFEKEGTKLEWRW--KCGPAP 114 (240)
Q Consensus 80 ~y~~~~~~~~~~~l~~t~eK~~~~I~~rl--~l~~~~ 114 (240)
..+|.....+ ..|+++++-.+.++.|+| .|.+.+
T Consensus 94 ~~sls~~~~~-~~L~L~~~~~L~~lPlkW~fhL~~~~ 129 (235)
T 2qm4_A 94 EATFSCDCVA-DALILRVRSELSGLPFYWNFHCMLAS 129 (235)
T ss_dssp CCEEEEEEET-TEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred ceEEEecCCC-CcEEEEEEEECCCCCEEEEEEEeeCC
Confidence 3344322111 236666655555566665 455554
No 7
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=73.46 E-value=2.2 Score=29.70 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=17.1
Q ss_pred HHHHHhchhHH----------HHHHHHHHHHH
Q 047048 161 FLGVLNSKKSK----------LRELQDKLSKQ 182 (240)
Q Consensus 161 Fv~vLNEKK~K----------IRelq~~L~~~ 182 (240)
|-+|||+||.- ++.+|+.|...
T Consensus 17 ~eqVLNqKk~SLLRsPEVI~Fl~~qq~~l~~q 48 (62)
T 2kw3_C 17 LEQVLNQKRLSLLRSPEVVQFLQKQQQLLNQQ 48 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 77999999985 47777777653
No 8
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=54.94 E-value=20 Score=25.39 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHH-HHHhchhHHHHHHHHHHHHHhhhc
Q 047048 160 KFL-GVLNSKKSKLRELQDKLSKQAVMG 186 (240)
Q Consensus 160 KFv-~vLNEKK~KIRelq~~L~~~~~~~ 186 (240)
+.+ .-||+|.+-|++|+.+|.+++..=
T Consensus 28 ~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 28 KELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444 568899999999999988877543
No 9
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.31 E-value=17 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=19.2
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHh
Q 047048 157 IYAKFLGVLNSKKSKLRELQDKLSKQA 183 (240)
Q Consensus 157 Ly~KFv~vLNEKK~KIRelq~~L~~~~ 183 (240)
+-..|..+||.|..+|++|+..|....
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd 38 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKE 38 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 344788899999999999988876554
No 10
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=38.65 E-value=1.9e+02 Score=24.86 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=55.8
Q ss_pred eeEEEEecCCcc---eEEeecHHHHH--HHhhccCCCHHHHHHHHHHHhc--CCCC---Cceee--EEecCCCCceEEEE
Q 047048 29 HFDLSITDGLNA---WLCNASEEQVK--DRAALWDQPVTEYIKLAERYLG--FQQP---GCVYG--FTDAADGCKRLSWT 96 (240)
Q Consensus 29 ~f~L~~TDG~~~---w~g~vs~~~i~--~rA~~~~~s~eey~~~l~~aL~--~~~p---~~~y~--~~~~~~~~~~l~~t 96 (240)
.+.|-+||-..| |.++++++.-. ..--.+-++++.|...+-..|. ...+ ...|. +.. +++...|.|
T Consensus 64 ~lrIeLTdd~D~FFLY~~~i~e~dF~~LK~eQ~L~VDF~~FP~~lI~LL~~Ci~~~~~~~~~f~avL~~-~~g~a~L~f- 141 (228)
T 3q0x_A 64 ILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTI-RGGESVFKI- 141 (228)
T ss_dssp EEEEEEECSSCTTCEEEEEEETTTHHHHHHTTTCCSCTTTHHHHHHHHHHHHHHCCTTCSSEEEEEEEE-CSSCEEEEE-
T ss_pred EEEEEECcCCCCceeEEEEeCHHHHHHHHHHcCeeeeHHHHHHHHHHHHHHHhcccccCCCcEEEEEEe-cCCceEEEE-
Confidence 388999998888 57888887744 2456678899999999888882 1111 12343 322 344455555
Q ss_pred EEee-ceeEEEEEeeecCCCCcchHHHHHHHH
Q 047048 97 FEKE-GTKLEWRWKCGPAPNSKKVPAGILDFL 127 (240)
Q Consensus 97 ~eK~-~~~I~~rl~l~~~~d~~e~~~eL~d~l 127 (240)
+++. -+.|+ .|.|...+-+++.+...+.+.
T Consensus 142 VE~~eFK~l~-hLSL~f~~asde~Ik~yLa~R 172 (228)
T 3q0x_A 142 VEINDEKQLP-HITLAFRPGNDSVVKQFLAFR 172 (228)
T ss_dssp EEEETTEEEE-EEEEEEEECCHHHHHHHHHHH
T ss_pred EEccCcceEE-EEEEEeecCCHHHHHHHHHHH
Confidence 2321 11222 234444444555666666663
No 11
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=32.54 E-value=1.2e+02 Score=24.05 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhchhHHHHHHHHHHHHHhhh
Q 047048 138 KCLAQSERFKNEKLEFES-AIYAKFLGVLNSKKSKLRELQDKLSKQAVM 185 (240)
Q Consensus 138 ~l~~qlEe~v~~K~e~E~-~Ly~KFv~vLNEKK~KIRelq~~L~~~~~~ 185 (240)
.+.+.+.+|...+.+++. +.|+++. ...+-..+|+++++.|..-...
T Consensus 41 eaq~li~eF~~~Q~~~~~~q~~Gk~~-~~~e~~~el~~l~~~l~~np~V 88 (151)
T 2pih_A 41 KVSTIVNQIKALQKQAVNLKHYEKHE-ALKQVEAKIDALQEELEEIPVI 88 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcc-chHHHHHHHHHHHHHHHcCHHH
Confidence 678889999998888865 6677777 7888888999999888654443
No 12
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.19 E-value=18 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=15.4
Q ss_pred chhHHHHHHHHHHHHHhhhc
Q 047048 167 SKKSKLRELQDKLSKQAVMG 186 (240)
Q Consensus 167 EKK~KIRelq~~L~~~~~~~ 186 (240)
.=|.||+.|+..++++++..
T Consensus 8 avKkKiq~lq~q~d~aee~~ 27 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEV 27 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34789999999888777543
No 13
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.43 E-value=75 Score=20.51 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 047048 170 SKLRELQDKLSKQAVMGDL 188 (240)
Q Consensus 170 ~KIRelq~~L~~~~~~~~~ 188 (240)
.||-+||..|.+++++...
T Consensus 23 ~kI~~lqkKlkeLee~a~k 41 (42)
T 2l5g_B 23 QQISKLKKKQQQLEEEAAK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 5677777777777765443
No 14
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=27.84 E-value=43 Score=19.83 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHh
Q 047048 169 KSKLRELQDKLSKQA 183 (240)
Q Consensus 169 K~KIRelq~~L~~~~ 183 (240)
|.||.+|++.|++..
T Consensus 12 KKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 12 KKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 678999988887643
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=23.25 E-value=2.1e+02 Score=20.42 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHhchhHHHHHHHHHHHHHhh
Q 047048 163 GVLNSKKSKLRELQDKLSKQAV 184 (240)
Q Consensus 163 ~vLNEKK~KIRelq~~L~~~~~ 184 (240)
..|.+|-.-|++|+..|.+++.
T Consensus 47 k~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 47 LELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4567777889999999988864
No 16
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.14 E-value=2.1e+02 Score=21.43 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 047048 144 ERFKNEKLEFESAIYAKFLGVLNSKKSKLRELQDKLSK 181 (240)
Q Consensus 144 Ee~v~~K~e~E~~Ly~KFv~vLNEKK~KIRelq~~L~~ 181 (240)
|++++.|.++|..| .....-=-+.-.+||++|..|+.
T Consensus 21 eeL~kQk~eL~~~l-~~l~~e~~~R~~~i~el~akidd 57 (101)
T 1d7m_A 21 EQLIKQKDQLNSLL-ASLESEGAEREKRLRELEAKLDE 57 (101)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777543 22333333455677888777654
No 17
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.83 E-value=1.1e+02 Score=22.02 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.2
Q ss_pred HHHHhchhHHHHHHHHHHHHH
Q 047048 162 LGVLNSKKSKLRELQDKLSKQ 182 (240)
Q Consensus 162 v~vLNEKK~KIRelq~~L~~~ 182 (240)
-..|+.|+.+||+|++=++++
T Consensus 27 ~~~l~~k~~~v~eLEdYID~L 47 (75)
T 3tso_C 27 KELLRRKDTHIRELEDYIDNL 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999888765
Done!