Query 047050
Match_columns 186
No_of_seqs 134 out of 1248
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.2E-23 4.7E-28 178.7 12.4 185 1-185 142-349 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.8E-23 4E-28 179.1 12.0 186 1-186 166-374 (968)
3 KOG0617 Ras suppressor protein 99.7 6.9E-20 1.5E-24 123.8 -3.7 153 21-182 31-187 (264)
4 KOG4194 Membrane glycoprotein 99.7 1.8E-18 3.8E-23 135.7 1.3 182 1-182 127-331 (873)
5 KOG0472 Leucine-rich repeat pr 99.7 6.6E-19 1.4E-23 132.6 -4.6 168 5-184 120-291 (565)
6 KOG4194 Membrane glycoprotein 99.7 5.1E-18 1.1E-22 133.1 -0.4 178 2-185 200-408 (873)
7 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.3E-22 112.5 -2.7 129 45-181 34-163 (264)
8 KOG0444 Cytoskeletal regulator 99.6 1.7E-17 3.7E-22 131.6 -3.8 171 1-180 152-328 (1255)
9 KOG0472 Leucine-rich repeat pr 99.6 1.5E-16 3.3E-21 120.1 1.0 169 3-181 366-541 (565)
10 KOG4237 Extracellular matrix p 99.6 9.5E-17 2.1E-21 120.7 -0.4 181 2-182 70-336 (498)
11 KOG0444 Cytoskeletal regulator 99.6 2.2E-16 4.7E-21 125.4 -0.1 149 6-157 85-258 (1255)
12 PRK15387 E3 ubiquitin-protein 99.6 6E-15 1.3E-19 122.1 7.4 144 23-185 302-462 (788)
13 cd00116 LRR_RI Leucine-rich re 99.5 2.6E-14 5.7E-19 108.5 5.2 179 2-181 84-291 (319)
14 PRK15370 E3 ubiquitin-protein 99.5 7.9E-14 1.7E-18 115.8 8.2 169 1-185 201-383 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.7E-18 114.6 8.3 162 3-185 182-362 (754)
16 PLN03210 Resistant to P. syrin 99.4 7E-13 1.5E-17 115.7 10.6 59 121-180 779-837 (1153)
17 KOG0532 Leucine-rich repeat (L 99.4 3.4E-15 7.4E-20 117.0 -3.5 167 3-182 79-248 (722)
18 PLN03210 Resistant to P. syrin 99.4 1E-12 2.2E-17 114.7 11.3 178 1-179 659-904 (1153)
19 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-13 3.6E-18 104.1 4.4 178 2-181 54-263 (319)
20 KOG0618 Serine/threonine phosp 99.4 7.5E-14 1.6E-18 114.7 1.0 170 1-181 243-465 (1081)
21 PRK15387 E3 ubiquitin-protein 99.4 3.4E-12 7.4E-17 106.0 9.4 45 2-51 225-269 (788)
22 PLN03150 hypothetical protein; 99.4 3E-12 6.5E-17 105.3 8.7 111 69-185 420-532 (623)
23 KOG0618 Serine/threonine phosp 99.3 1.4E-13 3.1E-18 113.1 0.1 149 1-178 361-510 (1081)
24 PLN03150 hypothetical protein; 99.3 1.5E-11 3.3E-16 101.2 8.0 71 64-140 439-510 (623)
25 KOG1259 Nischarin, modulator o 99.2 1E-12 2.3E-17 96.5 -0.6 138 15-183 276-414 (490)
26 PF14580 LRR_9: Leucine-rich r 99.2 4E-11 8.7E-16 83.0 7.1 125 21-175 17-147 (175)
27 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 97.3 4.4 136 46-185 142-294 (394)
28 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.9E-17 98.7 -0.8 175 1-181 93-359 (498)
29 PF14580 LRR_9: Leucine-rich r 99.2 7.6E-11 1.6E-15 81.6 6.4 111 63-182 15-127 (175)
30 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.5E-15 67.0 3.3 61 120-180 1-61 (61)
31 KOG1259 Nischarin, modulator o 99.1 1.9E-11 4.1E-16 90.0 -0.3 130 1-162 286-416 (490)
32 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.7E-16 97.3 -2.6 163 4-178 103-270 (722)
33 COG4886 Leucine-rich repeat (L 99.0 5.7E-10 1.2E-14 87.4 4.9 127 46-181 118-268 (394)
34 PF13855 LRR_8: Leucine rich r 98.9 2.6E-09 5.7E-14 61.3 3.8 58 68-131 2-60 (61)
35 KOG3207 Beta-tubulin folding c 98.6 5.9E-09 1.3E-13 80.1 -0.5 84 18-101 141-232 (505)
36 KOG1909 Ran GTPase-activating 98.6 4.5E-08 9.8E-13 73.4 3.2 114 67-181 157-283 (382)
37 KOG3207 Beta-tubulin folding c 98.5 2.8E-08 6.1E-13 76.5 1.5 157 19-182 168-340 (505)
38 KOG1909 Ran GTPase-activating 98.5 4.2E-08 9E-13 73.5 2.4 178 1-180 94-310 (382)
39 KOG0531 Protein phosphatase 1, 98.4 3.3E-08 7.2E-13 78.0 -0.5 86 63-157 114-199 (414)
40 KOG4579 Leucine-rich repeat (L 98.4 3E-08 6.6E-13 65.2 -1.4 82 92-180 54-135 (177)
41 KOG0531 Protein phosphatase 1, 98.3 8.2E-08 1.8E-12 75.8 -0.4 128 43-181 71-199 (414)
42 PF12799 LRR_4: Leucine Rich r 98.3 5.2E-07 1.1E-11 47.9 2.6 36 121-157 2-37 (44)
43 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.3E-11 46.7 3.2 38 67-105 1-38 (44)
44 KOG4658 Apoptotic ATPase [Sign 98.2 6.6E-07 1.4E-11 76.4 3.0 101 2-102 548-653 (889)
45 KOG4579 Leucine-rich repeat (L 98.2 7.6E-08 1.6E-12 63.4 -2.2 101 4-133 32-136 (177)
46 KOG1859 Leucine-rich repeat pr 98.2 2.4E-08 5.3E-13 81.4 -5.9 113 58-180 178-291 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.2 2.8E-06 6E-11 62.3 4.8 39 119-157 213-255 (388)
48 KOG1859 Leucine-rich repeat pr 98.1 6.4E-08 1.4E-12 79.1 -4.6 153 16-182 102-268 (1096)
49 KOG2120 SCF ubiquitin ligase, 98.1 7.5E-07 1.6E-11 66.0 0.3 157 18-178 205-373 (419)
50 KOG2120 SCF ubiquitin ligase, 98.0 2.5E-07 5.5E-12 68.4 -3.5 155 23-180 185-350 (419)
51 KOG4658 Apoptotic ATPase [Sign 97.9 1.8E-05 3.9E-10 67.8 5.3 149 20-175 520-675 (889)
52 KOG1644 U2-associated snRNP A' 97.9 2.8E-05 6.1E-10 54.6 4.8 104 67-177 42-149 (233)
53 PRK15386 type III secretion pr 97.8 0.00013 2.9E-09 57.1 8.6 74 19-102 48-123 (426)
54 COG5238 RNA1 Ran GTPase-activa 97.8 5.2E-05 1.1E-09 55.8 5.0 148 17-181 86-255 (388)
55 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.3E-10 66.6 2.4 117 59-182 139-264 (699)
56 KOG2982 Uncharacterized conser 97.6 3.7E-05 8E-10 57.2 2.4 64 119-182 198-263 (418)
57 KOG1644 U2-associated snRNP A' 97.3 0.00047 1E-08 48.6 5.0 104 69-181 21-126 (233)
58 KOG2739 Leucine-rich acidic nu 97.3 0.00021 4.6E-09 52.0 3.1 85 63-151 61-150 (260)
59 KOG3665 ZYG-1-like serine/thre 97.2 0.00025 5.4E-09 59.5 2.4 108 67-180 122-232 (699)
60 KOG2739 Leucine-rich acidic nu 96.9 0.00068 1.5E-08 49.4 2.6 92 59-157 35-129 (260)
61 PF13306 LRR_5: Leucine rich r 96.9 0.009 2E-07 39.0 7.5 123 17-170 6-128 (129)
62 PRK15386 type III secretion pr 96.8 0.0059 1.3E-07 48.1 7.1 127 2-154 55-187 (426)
63 KOG2123 Uncharacterized conser 96.3 0.00013 2.9E-09 53.9 -4.4 35 68-104 20-54 (388)
64 PF00560 LRR_1: Leucine Rich R 96.2 0.0027 5.9E-08 28.1 1.0 18 146-164 2-19 (22)
65 PF00560 LRR_1: Leucine Rich R 96.1 0.0021 4.5E-08 28.5 0.6 19 24-43 1-19 (22)
66 KOG2982 Uncharacterized conser 96.1 0.0039 8.3E-08 46.8 2.0 37 68-104 72-110 (418)
67 KOG2123 Uncharacterized conser 96.0 0.00057 1.2E-08 50.7 -2.5 17 20-36 38-54 (388)
68 PF13306 LRR_5: Leucine rich r 95.5 0.072 1.6E-06 34.6 6.4 107 61-177 6-112 (129)
69 PF13504 LRR_7: Leucine rich r 94.8 0.023 5E-07 23.3 1.4 14 68-81 2-15 (17)
70 KOG4308 LRR-containing protein 94.4 0.00028 6.1E-09 56.7 -9.0 178 2-181 90-303 (478)
71 PF13516 LRR_6: Leucine Rich r 93.7 0.022 4.8E-07 25.6 0.2 22 22-43 1-22 (24)
72 smart00370 LRR Leucine-rich re 92.0 0.17 3.6E-06 23.0 2.0 20 66-86 1-20 (26)
73 smart00369 LRR_TYP Leucine-ric 92.0 0.17 3.6E-06 23.0 2.0 20 66-86 1-20 (26)
74 KOG0473 Leucine-rich repeat pr 90.2 0.008 1.7E-07 43.6 -5.2 65 18-104 37-101 (326)
75 KOG1947 Leucine rich repeat pr 90.1 0.22 4.8E-06 39.9 2.3 113 66-179 187-306 (482)
76 KOG0473 Leucine-rich repeat pr 89.7 0.011 2.4E-07 43.0 -4.8 87 63-157 38-124 (326)
77 KOG3864 Uncharacterized conser 88.5 0.12 2.7E-06 36.7 -0.2 85 67-154 101-186 (221)
78 smart00365 LRR_SD22 Leucine-ri 83.3 1.1 2.5E-05 20.5 1.7 13 68-80 3-15 (26)
79 smart00364 LRR_BAC Leucine-ric 81.7 1.1 2.4E-05 20.6 1.3 12 170-181 4-15 (26)
80 smart00368 LRR_RI Leucine rich 80.7 0.91 2E-05 21.1 0.9 16 23-38 2-17 (28)
81 KOG3864 Uncharacterized conser 78.3 0.31 6.6E-06 34.8 -1.7 15 24-38 102-116 (221)
82 KOG1947 Leucine rich repeat pr 78.2 1.4 3E-05 35.3 1.8 64 65-132 241-307 (482)
83 KOG3763 mRNA export factor TAP 63.5 5.2 0.00011 33.0 1.9 63 119-181 217-283 (585)
84 smart00367 LRR_CC Leucine-rich 55.7 5.8 0.00013 17.8 0.6 13 22-34 1-13 (26)
85 TIGR00864 PCC polycystin catio 38.4 25 0.00054 35.1 2.3 32 97-133 1-32 (2740)
86 KOG3763 mRNA export factor TAP 35.1 20 0.00043 29.8 1.1 14 23-36 218-231 (585)
87 KOG4341 F-box protein containi 34.2 26 0.00057 28.2 1.6 36 143-178 400-436 (483)
88 TIGR00864 PCC polycystin catio 27.8 47 0.001 33.4 2.3 30 74-103 2-31 (2740)
89 smart00446 LRRcap occurring C- 22.7 42 0.0009 15.4 0.6 15 18-32 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.2e-23 Score=178.67 Aligned_cols=185 Identities=29% Similarity=0.411 Sum_probs=117.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.|+++.|.+.+.+|..++++++|+.|++++|.+.+..|.++.+++.| .+ .|.+.+.+|..+.++++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 4556666777777777777777777777777777777777766655444 33 5555566666666666677777666
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCcc------------------chhhhcCcccEEeccCCccCchhh
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNI------------------QTERILTTSATIDLSSNRFQEKIL 137 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~------------------~~~~~~~~L~~l~l~~n~l~~~~~ 137 (186)
|.+.+.+|..++.+++|++|++++|.+.+..| .+..+ .....+++|+.|++++|.+.+.+|
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 66666566666666666666666666655444 22110 011224566666666666666666
Q ss_pred HHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 138 EVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
.++..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+++.+|
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 666666666666666666666666666666667777777776666655
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.8e-23 Score=179.11 Aligned_cols=186 Identities=30% Similarity=0.389 Sum_probs=127.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.|++++|.+.+.+|+.++++++|+.|++++|.+.+.+|+.+..++.| .+ .|.+.+.+|..+.++++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 4556666666666666666666666666666666666666655554443 22 4444445555555555555555555
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCc---c---------------chhhhcCcccEEeccCCccCchhh
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKN---I---------------QTERILTTSATIDLSSNRFQEKIL 137 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~---~---------------~~~~~~~~L~~l~l~~n~l~~~~~ 137 (186)
|.+.+.+|..++.+++|+.|++++|.+.+..| .+.. + .....+++|+++++++|.+.+..|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 55554455555555555555555555544333 1100 0 012337899999999999999899
Q ss_pred HHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCCC
Q 047050 138 EVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~ 186 (186)
.++..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|.
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 9999999999999999999999999999999999999999999988773
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=6.9e-20 Score=123.78 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=113.3
Q ss_pred cccCccEEEeeecccccccch--hHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEe
Q 047050 21 TQHQLQLLIISRNQIHGRISN--WMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNV 98 (186)
Q Consensus 21 ~l~~L~~L~l~~n~i~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 98 (186)
++.+++.|.+++|.++...|. .+.+++.+.+.|+..+.+|..+..+++|+.|.+..|++.. .|..|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhc
Confidence 445555555555555432221 1223333444555555888888899999999999998886 7888999999999999
Q ss_pred cCccccc-CCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeecc
Q 047050 99 GNNKLSG-PIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 99 ~~n~~~~-~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 176 (186)
+.|++.. ..| .+.. ++.|+.++++.|.+.- +|+.++.+++|+.|.++.|.+- .+|.+++.+..|++|.+.
T Consensus 110 tynnl~e~~lpgnff~------m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFY------MTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred cccccccccCCcchhH------HHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence 9888763 233 5555 7788888999998854 7788888999999999998887 788899999889999998
Q ss_pred Cccccc
Q 047050 177 LNKFVE 182 (186)
Q Consensus 177 ~n~l~~ 182 (186)
+|.++-
T Consensus 182 gnrl~v 187 (264)
T KOG0617|consen 182 GNRLTV 187 (264)
T ss_pred cceeee
Confidence 888763
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.8e-18 Score=135.68 Aligned_cols=182 Identities=17% Similarity=0.097 Sum_probs=138.4
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHh---hcceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMW---DMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.|.+.+|.|+..-.++++.++.|+.||++-|.|+..-...+. +++.|.+ .|.++..-...|..+.+|.+|.++.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 46788889999877788889999999999999988754434443 3566666 6666666667788888888888888
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccc------------------hhhhcCcccEEeccCCccCchhh
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQ------------------TERILTTSATIDLSSNRFQEKIL 137 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~------------------~~~~~~~L~~l~l~~n~l~~~~~ 137 (186)
|+++...+..|..+++|+.|++..|++.-.-- .+.++. ++-.+..+++++|..|++.....
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 88887666677778888888888888752200 221111 12236778888888888888778
Q ss_pred HHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 138 EVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.|+.++++|+.|+++.|.|.+..++.|...++|+.||+++|.+++
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 888888888889998888888888888888888889988888864
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=6.6e-19 Score=132.63 Aligned_cols=168 Identities=24% Similarity=0.302 Sum_probs=103.4
Q ss_pred eeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccCCccC
Q 047050 5 WIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 5 ~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
+.++|++. ++|++++++..++.++-.+|.++ ..|+++..+.++ .+ +|++. .+|+..-++++|+++|...|.++
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh
Confidence 33444444 44444444444444444444443 334444433332 22 44444 34444444777777777777777
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCc
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGI 160 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 160 (186)
. +|+.++.+.+|..|++..|++. ..|++.+ +..|.+++++.|++.-..+.-.+.+.++..||+++|.++ +.
T Consensus 197 t-lP~~lg~l~~L~~LyL~~Nki~-~lPef~g------cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 197 T-LPPELGGLESLELLYLRRNKIR-FLPEFPG------CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred c-CChhhcchhhhHHHHhhhcccc-cCCCCCc------cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 5 7777777777777777777776 4455555 566777777777775533334446777888888888877 77
Q ss_pred cccccCCCCCceeeccCccccccC
Q 047050 161 PSSLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 161 ~~~~~~l~~L~~L~l~~n~l~~~i 184 (186)
|.++..+++|..||+++|.+++-.
T Consensus 268 Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred chHHHHhhhhhhhcccCCccccCC
Confidence 888888888888888888777543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.67 E-value=5.1e-18 Score=133.13 Aligned_cols=178 Identities=18% Similarity=0.160 Sum_probs=88.3
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccc---hhHhhcceeee-eceeeeecCcccc-------------
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS---NWMWDMGVRTF-TNNFHGRIPQTYV------------- 64 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~l~~-~~~~~~~~~~~~~------------- 64 (186)
+.+-++-|+++..-+..|+++++|+.|++..|+|.-.-- ..+..++.+.+ .|.+...-...|.
T Consensus 200 ~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N 279 (873)
T KOG4194|consen 200 LTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN 279 (873)
T ss_pred eeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc
Confidence 445566666663444556667777777777666531101 11112222222 3333322233334
Q ss_pred -----------cCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccC
Q 047050 65 -----------QGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 65 -----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 133 (186)
++++|+.|+++.|.+....+..+...++|+.|+++.|++....++ .+..+..|++|.|++|+++
T Consensus 280 ~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~-----sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 280 RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG-----SFRVLSQLEELNLSHNSID 354 (873)
T ss_pred hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh-----HHHHHHHhhhhcccccchH
Confidence 444444444444444443344444444444444444444433321 1122455566666666665
Q ss_pred chhhHHhhccCCCCEEEcCCCccccCccc---cccCCCCCceeeccCccccccCC
Q 047050 134 EKILEVVGKLNSLKNSNISHNNLIGGIPS---SLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 134 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
..-...|..+.+|+.|||+.|.+++.+-+ .|..+++|+.|++.+|++. .||
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~ 408 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIP 408 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecc
Confidence 54445566666666666666666643332 3556667777777777664 443
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-17 Score=112.52 Aligned_cols=129 Identities=22% Similarity=0.328 Sum_probs=112.9
Q ss_pred hcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccE
Q 047050 45 DMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSAT 124 (186)
Q Consensus 45 ~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~ 124 (186)
....+.+..+-....|+.+..+.+|+.|.+.+|+++. +|.+++.+++|+.|+++-|++......++. ++.|+.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~~lprgfgs------~p~lev 106 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLNILPRGFGS------FPALEV 106 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhhcCccccCC------Cchhhh
Confidence 3455666555556788899999999999999999997 899999999999999999998855446666 899999
Q ss_pred EeccCCccC-chhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 125 IDLSSNRFQ-EKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 125 l~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+++++|.+. ..+|..|..++.|+.|++++|.|. .+|..++++++|+.|.+.+|.+-
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 999999996 457889999999999999999998 89999999999999999999864
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=1.7e-17 Score=131.60 Aligned_cols=171 Identities=25% Similarity=0.296 Sum_probs=123.7
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccch---hHhhcceeee--eceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISN---WMWDMGVRTF--TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~l~~--~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
|.+|+++.|.+. .+|+.+.++.+|+.|.+++|.+.-.--. ++..++.|.+ .++-...+|.++..+.+|..+|++
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 346777777777 7777788888888888888765422112 2233333333 334445688899999999999999
Q ss_pred CCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 76 GNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
.|.+.. +|..+..+++|+.|++++|+++..--.... ..+++.|++++|+++. +|..++.+++|+.|.+.+|.
T Consensus 231 ~N~Lp~-vPecly~l~~LrrLNLS~N~iteL~~~~~~------W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 231 ENNLPI-VPECLYKLRNLRRLNLSGNKITELNMTEGE------WENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ccCCCc-chHHHhhhhhhheeccCcCceeeeeccHHH------Hhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCc
Confidence 999987 899999999999999999998743221112 4577888888888866 78888888888888888886
Q ss_pred cc-cCccccccCCCCCceeeccCccc
Q 047050 156 LI-GGIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 156 ~~-~~~~~~~~~l~~L~~L~l~~n~l 180 (186)
+. ..+|+.++++..|+.+..++|.+
T Consensus 303 L~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 303 LTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred ccccCCccchhhhhhhHHHHhhcccc
Confidence 64 24777777777777777777665
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=1.5e-16 Score=120.05 Aligned_cols=169 Identities=24% Similarity=0.321 Sum_probs=137.2
Q ss_pred eeeeecCCccccCchhhhccc---CccEEEeeecccccccchhHhhccee----eeeceeeeecCcccccCCCCCEEEcc
Q 047050 3 INWIQLQPLDCEFPDVLKTQH---QLQLLIISRNQIHGRISNWMWDMGVR----TFTNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~---~L~~L~l~~n~i~~~~~~~~~~l~~l----~~~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
.+..+.-.++ .+|.....-- -+..++++.|++. .+|+.+..++.+ .+.++..+..|..++.++++..|+++
T Consensus 366 iL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 3455555566 6675544333 3778899999986 677777666544 55899999999999999999999999
Q ss_pred CCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 76 GNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
+|-+.. +|..++.+..|+.++++.|++. ..|.|... +..++.+-.+.|++....++.+..+.+|..||+..|.
T Consensus 444 NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~-----lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 444 NNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYE-----LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred cchhhh-cchhhhhhhhhheecccccccc-cchHHHhh-----HHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 999987 8999999999999999999887 45544331 3445566667799988888889999999999999999
Q ss_pred cccCccccccCCCCCceeeccCcccc
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+. .+|..++++.++++|++.+|++.
T Consensus 517 lq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhccccceeEEEecCCccC
Confidence 98 89999999999999999999996
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=9.5e-17 Score=120.71 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=134.0
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee----eee-ceeeeecCcccccCCCCCEEEccC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR----TFT-NNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l----~~~-~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|.++|+.|.|+..-|++|+++++|+.+|+++|.|+.+.|++|..+..+ .++ |++.+.....|.++.+++-|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 678999999996667899999999999999999999999999888665 224 566554445566676677777766
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CC------------------------------------Cc-------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KC------------------------------------KN------- 112 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~------------------------------------~~------- 112 (186)
|++.-.....|..++++..|.+..|.+..... ++ ++
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 66665444556666666555555554321100 00 00
Q ss_pred -------------------------------------cchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 113 -------------------------------------IQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 113 -------------------------------------~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
-..++.+++|+.+++++|.++++-+.+|.....++.|.+..|.
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~ 309 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK 309 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch
Confidence 0124568899999999999999888999999999999999999
Q ss_pred cccCccccccCCCCCceeeccCccccc
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
+.-.--..|.++..|+.|++.+|+|+.
T Consensus 310 l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 310 LEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred HHHHHHHhhhccccceeeeecCCeeEE
Confidence 874455568888999999999998863
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=2.2e-16 Score=125.44 Aligned_cols=149 Identities=24% Similarity=0.341 Sum_probs=74.7
Q ss_pred eecCCc-cccCchhhhcccCccEEEeeecccccccchhHhh---cceeeeeceeeeecCcc-cccCCCCCEEEccCCccC
Q 047050 6 IQLQPL-DCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTFTNNFHGRIPQT-YVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 6 l~~~~l-~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 80 (186)
+..|.+ ..-+|..+..+..|..+|+++|++. ..|..+.. +-.|++.++-++.+|.. +-+++-|-+||+++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 334444 3355666666666666666666664 44444333 23334444444455543 334555666666666666
Q ss_pred CcCchhhhhcCCCCEEEecCcccc----cCCCCCCcc----------------chhhhcCcccEEeccCCccCchhhHHh
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLS----GPIPKCKNI----------------QTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~----------------~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
. +|+.+..+..|++|.+++|.+. ...|+...+ +....+.+|..++++.|.+.. .|+.+
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecl 241 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECL 241 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHH
Confidence 4 5555556666666666666542 112211110 012224455555555555533 45555
Q ss_pred hccCCCCEEEcCCCccc
Q 047050 141 GKLNSLKNSNISHNNLI 157 (186)
Q Consensus 141 ~~l~~L~~L~l~~n~~~ 157 (186)
..+++|+.|++++|.|+
T Consensus 242 y~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhhheeccCcCcee
Confidence 55555555555555554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=6e-15 Score=122.11 Aligned_cols=144 Identities=23% Similarity=0.264 Sum_probs=84.4
Q ss_pred cCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhh-------------
Q 047050 23 HQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLID------------- 89 (186)
Q Consensus 23 ~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------- 89 (186)
++|+.|++++|.+.+ +|.....++.+.+.++....+|.. ..+|++|++++|+++. +|.....
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS 376 (788)
T ss_pred cccceeECCCCcccc-CCCCcccccccccccCcccccccc---ccccceEecCCCccCC-CCCCCcccceehhhcccccc
Confidence 455555666655543 233233344444433222233321 1357777777777775 4432111
Q ss_pred ----cCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccccc
Q 047050 90 ----YVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLR 165 (186)
Q Consensus 90 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 165 (186)
..+|+.|++++|.+.+ +|. ...+|+.|++++|.+++ +|... ..|+.|++++|.++ .+|..++
T Consensus 377 LP~l~~~L~~LdLs~N~Lt~-LP~--------l~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 377 LPALPSGLKELIVSGNRLTS-LPV--------LPSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred CcccccccceEEecCCcccC-CCC--------cccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHh
Confidence 0123444444444432 111 13467777888887765 45432 35678888999888 7899999
Q ss_pred CCCCCceeeccCccccccCC
Q 047050 166 NLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 166 ~l~~L~~L~l~~n~l~~~ip 185 (186)
++++++.+++++|+++|.+|
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred hccCCCeEECCCCCCCchHH
Confidence 99999999999999998765
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=2.6e-14 Score=108.51 Aligned_cols=179 Identities=20% Similarity=0.212 Sum_probs=82.7
Q ss_pred eeeeeecCCccccCchhhhcccC---ccEEEeeecccccc----cchhHh----hcceeee-eceeee----ecCccccc
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQ---LQLLIISRNQIHGR----ISNWMW----DMGVRTF-TNNFHG----RIPQTYVQ 65 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~---L~~L~l~~n~i~~~----~~~~~~----~l~~l~~-~~~~~~----~~~~~~~~ 65 (186)
+.++++.|.+.+..+..+..+.. |+.|++++|.+.+. +...+. .++.+.+ +|.+.+ .++..+..
T Consensus 84 ~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 163 (319)
T cd00116 84 QELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163 (319)
T ss_pred eEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh
Confidence 34455555555444444444433 55555555555421 111221 2233333 233221 12233344
Q ss_pred CCCCCEEEccCCccCCc----CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 66 GCNLDFLRLNGNCLERP----IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 66 l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+...... ......+++|++|++++|.+++.....+.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-AETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-HHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 44555555555555421 12223333455555555555432111000 00112245677777777766643222222
Q ss_pred c-----cCCCCEEEcCCCcccc----CccccccCCCCCceeeccCcccc
Q 047050 142 K-----LNSLKNSNISHNNLIG----GIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 142 ~-----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
. .+.|+.+++.+|.++. .+...+..++.|+.+++++|.++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1 2567777777776652 23344555567777777777765
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=7.9e-14 Score=115.78 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=104.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhH-hhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWM-WDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
++.++++.|.+. .+|..+. .+|+.|++++|.++. +|..+ ..++.+.+.++-...+|..+. .+|+.|++++|++
T Consensus 201 L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 201 ITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 456788888888 6777654 588888888888874 45443 346666664444446666554 3678888888887
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCc-----------cch--hhhcCcccEEeccCCccCchhhHHhhccCCC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKN-----------IQT--ERILTTSATIDLSSNRFQEKILEVVGKLNSL 146 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------~~~--~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L 146 (186)
+. +|..+. .+|+.|++++|++.+....+.. +.. ....++|+.|++++|.+++ +|..+ .++|
T Consensus 275 ~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL 348 (754)
T PRK15370 275 SC-LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL--PPEL 348 (754)
T ss_pred Cc-cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh--cCcc
Confidence 75 565543 4678888888877643221100 000 0113456777777777665 44443 2567
Q ss_pred CEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 147 KNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 147 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+.|++++|.++ .+|..+. +.|+.|++++|.++ .+|
T Consensus 349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLP 383 (754)
T ss_pred cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCC
Confidence 77777777776 4555442 46777777777765 344
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.3e-13 Score=114.60 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=111.7
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
.++++.+.++ .+|..+. ++|+.|++++|.++........+++.|.+.++....+|..+. .+|+.|++++|.+..
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~- 255 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE- 255 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCc-
Confidence 5677777777 6777653 589999999999985443444578888875555556777654 379999999999996
Q ss_pred CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhh-------------------cc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG-------------------KL 143 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~-------------------~l 143 (186)
+|..+. .+|+.|++++|++.. +|... ..+|+.|++++|.+++ +|..+. ..
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~-LP~~l-------~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISC-LPENL-------PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred CChhHh--CCCCEEECcCCccCc-ccccc-------CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCcccc
Confidence 787764 579999999999984 44211 2456777777776654 222111 12
Q ss_pred CCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 144 NSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 144 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|+.|+++.|.++ .+|..+. ++|+.|++++|+++ .+|
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP 362 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLP 362 (754)
T ss_pred ccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCC
Confidence 45677777777776 4565443 57888888888876 344
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=7e-13 Score=115.74 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=32.2
Q ss_pred cccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccc
Q 047050 121 TSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 121 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 180 (186)
+|+.|++++|.....+|..++.+++|+.|++++|.....+|..+ .+++|+.|++++|..
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 45555555555444455556666666666666554333455443 455666666665543
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=3.4e-15 Score=116.98 Aligned_cols=167 Identities=19% Similarity=0.269 Sum_probs=138.0
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeee---eceeeeecCcccccCCCCCEEEccCCcc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTF---TNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
+.+++.|.+. ++|..++.+..|+.+.+.+|.+ ..+|..+..+..+.+ .-+-...+|..++.++ |+.|.+++|++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 4577888888 8888888888898888888888 478888887766644 4445567888888886 99999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
+. +|..++....|..++++.|.+....+...+ +.+|+.+.+..|.+.. +|.++. .-.|..||++.|++. .
T Consensus 156 ~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~------l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 156 TS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGY------LTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-Y 225 (722)
T ss_pred cc-CCcccccchhHHHhhhhhhhhhhchHHhhh------HHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-e
Confidence 97 888889888999999999998866656666 7888889999998866 677776 445888999999998 8
Q ss_pred ccccccCCCCCceeeccCccccc
Q 047050 160 IPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
+|-.|.+++.|++|-|.+|++..
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCC
Confidence 89999999999999999999864
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=1e-12 Score=114.71 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=104.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhH--hhccee---------------------eeeceeee
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWM--WDMGVR---------------------TFTNNFHG 57 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~l---------------------~~~~~~~~ 57 (186)
|+.|+++.|....++|..++++++|+.|++++|...+.+|..+ ..++.+ .+.++-..
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 4667888777667888888888888888888764333444322 222222 22112122
Q ss_pred ecCccc------------------------------ccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCC
Q 047050 58 RIPQTY------------------------------VQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPI 107 (186)
Q Consensus 58 ~~~~~~------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 107 (186)
.+|..+ ...++|+.|++++|.....+|..++.+++|+.|++++|...+.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 233211 11246777788777655558888888999999999887544344
Q ss_pred CCCCc--------------cc-hhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCce
Q 047050 108 PKCKN--------------IQ-TERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFES 172 (186)
Q Consensus 108 ~~~~~--------------~~-~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 172 (186)
|.... +. ......+++.|++++|.++. +|.++..+++|+.|++.+|.-...+|..+..+++|+.
T Consensus 819 P~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~ 897 (1153)
T PLN03210 819 PTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLET 897 (1153)
T ss_pred CCCCCccccCEEECCCCCccccccccccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCe
Confidence 42211 00 00112456666666666654 5666666777777777664333356666666666777
Q ss_pred eeccCcc
Q 047050 173 LDLSLNK 179 (186)
Q Consensus 173 L~l~~n~ 179 (186)
+++++|.
T Consensus 898 L~l~~C~ 904 (1153)
T PLN03210 898 VDFSDCG 904 (1153)
T ss_pred eecCCCc
Confidence 7766664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=1.7e-13 Score=104.10 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=108.2
Q ss_pred eeeeeecCCcc------ccCchhhhcccCccEEEeeecccccccchhHhh------cceeee-eceeee----ecCcccc
Q 047050 2 VINWIQLQPLD------CEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD------MGVRTF-TNNFHG----RIPQTYV 64 (186)
Q Consensus 2 ~~~~l~~~~l~------~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~------l~~l~~-~~~~~~----~~~~~~~ 64 (186)
+.++++.+.+. ..++..+..+++|+.|++++|.+.+..+..+.. ++.+.+ .|.+.+ .+...+.
T Consensus 54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~ 133 (319)
T cd00116 54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133 (319)
T ss_pred eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH
Confidence 44556666554 234456677778888888888776544444433 444555 333331 2333455
Q ss_pred cC-CCCCEEEccCCccCCc----CchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCch---
Q 047050 65 QG-CNLDFLRLNGNCLERP----IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEK--- 135 (186)
Q Consensus 65 ~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~--- 135 (186)
.+ ++|++|++++|.+++. ++..+..+++|++|++++|.+++... .+. ......++|+.+++++|.+++.
T Consensus 134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA--EGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH--HHHHhCCCCCEEeccCCccChHHHH
Confidence 55 7788888888887732 23345556778888888887763110 000 0112245888888888887643
Q ss_pred -hhHHhhccCCCCEEEcCCCccccCcccccc-----CCCCCceeeccCcccc
Q 047050 136 -ILEVVGKLNSLKNSNISHNNLIGGIPSSLR-----NLTEFESLDLSLNKFV 181 (186)
Q Consensus 136 -~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~l~ 181 (186)
+...+..+++|+.|++++|.+++.....+. ..+.|++|++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 334555677888888888887753222222 2367888888888875
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=7.5e-14 Score=114.68 Aligned_cols=170 Identities=22% Similarity=0.332 Sum_probs=92.0
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---eeeceeeeecCcccccCCCCCEEEccCC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TFTNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
|++++++.|++. .+|+.++.+.+|+.++..+|.+. ..|..+...+.+ ....+-...+|+...++++|++|++..|
T Consensus 243 l~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 456677777777 66777777777777777777774 344443333332 2233333456666666666666666666
Q ss_pred ccCCcCchh--------------------------------------------------hhhcCCCCEEEecCcccccCC
Q 047050 78 CLERPIPTS--------------------------------------------------LIDYVNMNFLNVGNNKLSGPI 107 (186)
Q Consensus 78 ~l~~~~~~~--------------------------------------------------~~~l~~L~~L~l~~n~~~~~~ 107 (186)
++.. .|.. +..+..|+.|++++|++.. +
T Consensus 321 ~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-f 398 (1081)
T KOG0618|consen 321 NLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-F 398 (1081)
T ss_pred cccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc-C
Confidence 6654 3332 2223333333333333331 1
Q ss_pred CCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 108 PKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 108 ~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
|+ .....+..|++|++|+|+++. +|+.+..|..|+.|...+|.+. ..| ++.+++.|+.+|++.|.++
T Consensus 399 pa----s~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 399 PA----SKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CH----HHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 10 001113444555555555543 4455555555555555555554 455 6667777888888887765
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.36 E-value=3.4e-12 Score=106.01 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=26.4
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeee
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTF 51 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~ 51 (186)
+.|.+..|+++ .+|.. .++|+.|++++|.++. +|.....++.|.+
T Consensus 225 ~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~L 269 (788)
T PRK15387 225 TTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVLPPGLLELSI 269 (788)
T ss_pred CEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCcccccceeec
Confidence 45666667766 46642 4677777777777763 3444444444444
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.36 E-value=3e-12 Score=105.30 Aligned_cols=111 Identities=30% Similarity=0.443 Sum_probs=97.2
Q ss_pred CCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCC
Q 047050 69 LDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLK 147 (186)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~ 147 (186)
++.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+| .+.. +++|+.|++++|.+.+.+|..++.+++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS------ITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC------CCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 6789999999999899999999999999999999998887 4445 88999999999999999999999999999
Q ss_pred EEEcCCCccccCccccccCC-CCCceeeccCccccccCC
Q 047050 148 NSNISHNNLIGGIPSSLRNL-TEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 148 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~ip 185 (186)
.|++++|.+++.+|..++.. .++..+++.+|...+.+|
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999988764 467788999887554444
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-13 Score=113.07 Aligned_cols=149 Identities=23% Similarity=0.295 Sum_probs=114.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCc-ccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQ-TYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l 79 (186)
|+.|++-.|.+++..-+.+-+.++|+.|++++|++. .+|+ .+.++..|++|++++|++
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------------------~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------------------SFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeecccccc---------------------cCCHHHHhchHHhHHHhcccchh
Confidence 356778889999888899999999999999999996 3332 356788899999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
+. +|..+..++.|++|...+|.+. .+|++.. +++|+.+|++.|.++...-..-..+++|++||+++|.-...
T Consensus 420 ~~-Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~------l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 420 TT-LPDTVANLGRLHTLRAHSNQLL-SFPELAQ------LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred hh-hhHHHHhhhhhHHHhhcCCcee-echhhhh------cCcceEEecccchhhhhhhhhhCCCcccceeeccCCccccc
Confidence 87 8888889999999988888887 3455555 78899999999988765444444458899999999874334
Q ss_pred ccccccCCCCCceeeccCc
Q 047050 160 IPSSLRNLTEFESLDLSLN 178 (186)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n 178 (186)
--+.+..++++...++.-+
T Consensus 492 d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 492 DHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhHHhhhhhheecccC
Confidence 4455666777776666655
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.27 E-value=1.5e-11 Score=101.20 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=30.2
Q ss_pred ccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHh
Q 047050 64 VQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 64 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+| .+.. +++|+.|++++|.+++.+|..+
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~------L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ------LTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc------CCCCCEEECcCCcccccCChHH
Confidence 334444444444444444344444444444444444444444333 1122 3444444444444444444443
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=1e-12 Score=96.49 Aligned_cols=138 Identities=24% Similarity=0.238 Sum_probs=105.4
Q ss_pred CchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCC
Q 047050 15 FPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMN 94 (186)
Q Consensus 15 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 94 (186)
.-..+...+.|+.+|+++|.|+ .+..++.-.|.++.|++++|.+.. + ..+..+.+|+
T Consensus 276 ~~~~~dTWq~LtelDLS~N~I~---------------------~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~ 332 (490)
T KOG1259|consen 276 ALVSADTWQELTELDLSGNLIT---------------------QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQ 332 (490)
T ss_pred eEEecchHhhhhhccccccchh---------------------hhhhhhhhccceeEEeccccceee-e-hhhhhcccce
Confidence 3344556778889999999887 455555667889999999999885 3 4488899999
Q ss_pred EEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC-ccccccCCCCCcee
Q 047050 95 FLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG-IPSSLRNLTEFESL 173 (186)
Q Consensus 95 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 173 (186)
.||+++|.++.... +...+.++..|.++.|.+.. -..++.+.+|..||+++|+|... --..+++++.|+++
T Consensus 333 ~LDLS~N~Ls~~~G------wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 333 LLDLSGNLLAECVG------WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred EeecccchhHhhhh------hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 99999998874322 11227788999999998854 35667788999999999998621 23358999999999
Q ss_pred eccCcccccc
Q 047050 174 DLSLNKFVEH 183 (186)
Q Consensus 174 ~l~~n~l~~~ 183 (186)
.+.+|++++.
T Consensus 405 ~L~~NPl~~~ 414 (490)
T KOG1259|consen 405 RLTGNPLAGS 414 (490)
T ss_pred hhcCCCcccc
Confidence 9999998753
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=4e-11 Score=83.03 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=37.6
Q ss_pred cccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccc-cCCCCCEEEccCCccCCcCchhhhhcCCCCEEEec
Q 047050 21 TQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYV-QGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVG 99 (186)
Q Consensus 21 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 99 (186)
+..+++.|++.+|.|+. + +.+. .+.+|+.|++++|.++. + +.+..++.|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~---------------------I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST---------------------I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLS 72 (175)
T ss_dssp -----------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--
T ss_pred ccccccccccccccccc---------------------c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccC
Confidence 44467788888888762 1 1222 34566777777777665 2 345566677777777
Q ss_pred CcccccCCCCCCccchhhhcCcccEEeccCCccCch-hhHHhhccCCCCEEEcCCCccccCccc----cccCCCCCceee
Q 047050 100 NNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNSLKNSNISHNNLIGGIPS----SLRNLTEFESLD 174 (186)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~ 174 (186)
+|+++...+. ....+++|+.|++++|++... .-..+..+++|+.|++.+|.+... +. .+..+++|+.||
T Consensus 73 ~N~I~~i~~~-----l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 73 NNRISSISEG-----LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp SS---S-CHH-----HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred CCCCCccccc-----hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 7776632111 111256677777777776532 123445567777777777776522 22 245566666666
Q ss_pred c
Q 047050 175 L 175 (186)
Q Consensus 175 l 175 (186)
-
T Consensus 147 ~ 147 (175)
T PF14580_consen 147 G 147 (175)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1e-11 Score=97.25 Aligned_cols=136 Identities=28% Similarity=0.410 Sum_probs=78.6
Q ss_pred cceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCc-------------
Q 047050 46 MGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKN------------- 112 (186)
Q Consensus 46 l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------------- 112 (186)
++.+.+..+-...+|..+..+++|+.|++++|++.. ++...+..+.|+.+++++|++....+....
T Consensus 142 L~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred cccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 333333333333444444455555555555555554 444433444555555555554422221000
Q ss_pred ----cchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 113 ----IQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 113 ----~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
......+..+..+.+.+|++.. .+..++.+.+++.++++.|.++ .++. ++.+..++.+++++|.+...+|
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 0112225666677777777654 3667777888999999999988 4444 8888899999999988875554
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=1.3e-12 Score=98.69 Aligned_cols=175 Identities=18% Similarity=0.185 Sum_probs=123.4
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEE-eeecccccccchhHhhccee---------------------------eee
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLI-ISRNQIHGRISNWMWDMGVR---------------------------TFT 52 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~-l~~n~i~~~~~~~~~~l~~l---------------------------~~~ 52 (186)
|+-++++.|.|+..-|++|+.++.+..|- .++|+|+..-.+.|.++..+ .++
T Consensus 93 LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 93 LRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLY 172 (498)
T ss_pred hceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhccc
Confidence 56789999999999999999999988864 45589885544555555332 112
Q ss_pred ceeeeecCc-ccccCCCCCEEEccCCc-----------------------------------------------------
Q 047050 53 NNFHGRIPQ-TYVQGCNLDFLRLNGNC----------------------------------------------------- 78 (186)
Q Consensus 53 ~~~~~~~~~-~~~~l~~L~~L~l~~n~----------------------------------------------------- 78 (186)
.+....++. .|..+..++.+.+..|.
T Consensus 173 Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~ 252 (498)
T KOG4237|consen 173 DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLP 252 (498)
T ss_pred chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHH
Confidence 222222222 23333333333322221
Q ss_pred --------cCCcCc-hhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCE
Q 047050 79 --------LERPIP-TSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKN 148 (186)
Q Consensus 79 --------l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 148 (186)
.....| ..|..+++|+++++++|++++.-+ .+.+ ...+++|+|..|++..+-...|.++..|+.
T Consensus 253 s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~------~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 253 SRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG------AAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred HhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc------hhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 111111 236778999999999999986555 4444 788999999999998877788889999999
Q ss_pred EEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 149 SNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 149 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
|++.+|+|+...|.+|..+.+|.++.+-.|++.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999999888889999999999999888763
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=7.6e-11 Score=81.65 Aligned_cols=111 Identities=25% Similarity=0.311 Sum_probs=42.7
Q ss_pred cccCCCCCEEEccCCccCCcCchhhh-hcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 63 YVQGCNLDFLRLNGNCLERPIPTSLI-DYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
+.+..++++|++++|.++. + +.++ .+.+|+.|++++|.+.. +..+.. ++.|++|++++|.++...+....
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~~l~~------L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LEGLPG------LPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---TT----------TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-ccCccC------hhhhhhcccCCCCCCccccchHH
Confidence 3455578999999999986 3 3455 57899999999999984 333334 88999999999999874333234
Q ss_pred ccCCCCEEEcCCCccccC-ccccccCCCCCceeeccCccccc
Q 047050 142 KLNSLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 142 ~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+++|+.|++++|.|... .-..++.+++|+.|++.+|+++.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 689999999999999742 22457889999999999999874
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=1.1e-10 Score=67.00 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=50.7
Q ss_pred CcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccc
Q 047050 120 TTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 120 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 180 (186)
++|+++++++|+++...+.+|..+++|+++++++|.++...+..|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577888888888876667888889999999999988866677888999999999998875
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=1.9e-11 Score=89.96 Aligned_cols=130 Identities=24% Similarity=0.295 Sum_probs=101.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
|..+++++|.++ ++.++++=.++++.|++++|++. .+. .+..+++|+.||+++|.++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~---------------------~v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR---------------------TVQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee---------------------eeh-hhhhcccceEeecccchhH
Confidence 356789999999 99999999999999999999996 222 3677889999999999987
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch-hhHHhhccCCCCEEEcCCCccccC
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
.. ..-=..+.+.++|.+++|.+.... ..+.+.+|..|++++|+|... -...++.++.|+++.+.+|.+. .
T Consensus 343 ~~-~Gwh~KLGNIKtL~La~N~iE~LS-------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~ 413 (490)
T KOG1259|consen 343 EC-VGWHLKLGNIKTLKLAQNKIETLS-------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-G 413 (490)
T ss_pred hh-hhhHhhhcCEeeeehhhhhHhhhh-------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-c
Confidence 52 222245778899999999886321 122377899999999999643 2467788999999999999987 4
Q ss_pred ccc
Q 047050 160 IPS 162 (186)
Q Consensus 160 ~~~ 162 (186)
+++
T Consensus 414 ~vd 416 (490)
T KOG1259|consen 414 SVD 416 (490)
T ss_pred cch
Confidence 443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.3e-11 Score=97.32 Aligned_cols=163 Identities=19% Similarity=0.226 Sum_probs=132.6
Q ss_pred eeeecCCccccCchhhhcccCccEEEeeecccccccchhHhh--cceeeeeceeeeecCcccccCCCCCEEEccCCccCC
Q 047050 4 NWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD--MGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLER 81 (186)
Q Consensus 4 ~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 81 (186)
+-+..|++- .+|+.++++..|..++++-|+++ ..|..++. ++.+.+.|+-...+|..++....|..||.+.|.+..
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhh
Confidence 346677887 89999999999999999999996 67777665 466777888888899999988999999999999987
Q ss_pred cCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcc
Q 047050 82 PIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIP 161 (186)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 161 (186)
+|..++.+.+|+.+.+..|++....++... -.|..||++.|++.. +|-.|..+..|++|.|.+|.++ .-|
T Consensus 181 -lpsql~~l~slr~l~vrRn~l~~lp~El~~-------LpLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPP 250 (722)
T KOG0532|consen 181 -LPSQLGYLTSLRDLNVRRNHLEDLPEELCS-------LPLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPP 250 (722)
T ss_pred -chHHhhhHHHHHHHHHhhhhhhhCCHHHhC-------CceeeeecccCceee-cchhhhhhhhheeeeeccCCCC-CCh
Confidence 899999999999999999999866555433 468899999999976 8999999999999999999998 444
Q ss_pred cccc---CCCCCceeeccCc
Q 047050 162 SSLR---NLTEFESLDLSLN 178 (186)
Q Consensus 162 ~~~~---~l~~L~~L~l~~n 178 (186)
..++ +..-.+.|+...+
T Consensus 251 AqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 251 AQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred HHHHhccceeeeeeecchhc
Confidence 4332 2223455665555
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=5.7e-10 Score=87.41 Aligned_cols=127 Identities=30% Similarity=0.392 Sum_probs=84.4
Q ss_pred cceeeeeceeeeecCcccccCC-CCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccE
Q 047050 46 MGVRTFTNNFHGRIPQTYVQGC-NLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSAT 124 (186)
Q Consensus 46 l~~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~ 124 (186)
+..+.+.++-...++.....++ +|+.|++++|++.. ++..+..+++|+.|+++.|.+....+.... .+.|+.
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~------~~~L~~ 190 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLSN------LSNLNN 190 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhhh------hhhhhh
Confidence 3444444444457787777775 99999999999997 777889999999999999999855442212 566667
Q ss_pred EeccCCccCchhhHHhhccCCCCEEEcCCC-----------------------ccccCccccccCCCCCceeeccCcccc
Q 047050 125 IDLSSNRFQEKILEVVGKLNSLKNSNISHN-----------------------NLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 125 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-----------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+++++|++.. +|........|+.+.++.| .+. .++..++.+..++.+++++|.++
T Consensus 191 L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 7777777654 3443333344555555555 333 22455566666777777777665
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=2.6e-09 Score=61.27 Aligned_cols=58 Identities=34% Similarity=0.455 Sum_probs=32.4
Q ss_pred CCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCc
Q 047050 68 NLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNR 131 (186)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~ 131 (186)
+|++|++++|+++...+..|..+++|+++++++|++....+ .+.+ +++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~------l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN------LPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTT------STTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC------CCCCCEEeCcCCc
Confidence 56666666666665433456666666666666666654333 2222 5555555555554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.9e-09 Score=80.13 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=36.8
Q ss_pred hhhcccCccEEEeeeccccc-----ccchhHhhcceeee-eceeeeecCccc-ccCCCCCEEEccCCccCCc-Cchhhhh
Q 047050 18 VLKTQHQLQLLIISRNQIHG-----RISNWMWDMGVRTF-TNNFHGRIPQTY-VQGCNLDFLRLNGNCLERP-IPTSLID 89 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~n~i~~-----~~~~~~~~l~~l~~-~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~~~ 89 (186)
....+++++.||++.|-+.. .+.+.+..++.|.+ .|.+.-...... ..++.++.|.++.|-+++. +......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45566666666666665542 22333444444444 222211111110 1233455555555555431 1122334
Q ss_pred cCCCCEEEecCc
Q 047050 90 YVNMNFLNVGNN 101 (186)
Q Consensus 90 l~~L~~L~l~~n 101 (186)
+++|..|++..|
T Consensus 221 fPsl~~L~L~~N 232 (505)
T KOG3207|consen 221 FPSLEVLYLEAN 232 (505)
T ss_pred CCcHHHhhhhcc
Confidence 455555555555
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=4.5e-08 Score=73.36 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCCCEEEccCCccCCcC----chhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCc----hhhH
Q 047050 67 CNLDFLRLNGNCLERPI----PTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQE----KILE 138 (186)
Q Consensus 67 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~----~~~~ 138 (186)
+.|+++....|++.... ...|...+.|+.+.+..|.+...--.. -.+.+..+++|+.|++..|.++. .+..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a-l~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA-LAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHH-HHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 45666666666654311 123444556666666666553110000 01122336677777777777652 2345
Q ss_pred HhhccCCCCEEEcCCCccccCcccc----c-cCCCCCceeeccCcccc
Q 047050 139 VVGKLNSLKNSNISHNNLIGGIPSS----L-RNLTEFESLDLSLNKFV 181 (186)
Q Consensus 139 ~~~~l~~L~~L~l~~n~~~~~~~~~----~-~~l~~L~~L~l~~n~l~ 181 (186)
.++.|+.|+.++++.|.+...-..+ + ...++|+.+++.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 6666777777777777765332222 2 22567777777777765
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.8e-08 Score=76.51 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=80.2
Q ss_pred hhcccCccEEEeeeccccc----ccchhHhhcceeee-eceeeee-cCcccccCCCCCEEEccCCccCCcCchhhhhcCC
Q 047050 19 LKTQHQLQLLIISRNQIHG----RISNWMWDMGVRTF-TNNFHGR-IPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVN 92 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~l~~-~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 92 (186)
...+++|+.|+++.|++.- .....+..++.|.+ .|.+.-. +...+..+|+++.|++..|..-..-..+..-+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 3456677777777776542 22234455555555 3333311 2223345566677777666311111222333456
Q ss_pred CCEEEecCcccccCC--CCCCccchhhhcCcccEEeccCCccCch-hhHH-----hhccCCCCEEEcCCCccccCccc--
Q 047050 93 MNFLNVGNNKLSGPI--PKCKNIQTERILTTSATIDLSSNRFQEK-ILEV-----VGKLNSLKNSNISHNNLIGGIPS-- 162 (186)
Q Consensus 93 L~~L~l~~n~~~~~~--~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~~~~~~~~-- 162 (186)
|+.|++++|.+-... +.... ++.|..+.++.+.+.+. .|+. ....++|+.|++..|.+. ..+.
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~------l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~ 320 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGT------LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLN 320 (505)
T ss_pred HhhccccCCccccccccccccc------ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccc
Confidence 666777766654322 12222 56666666666666532 1221 234566777777777765 2222
Q ss_pred cccCCCCCceeeccCccccc
Q 047050 163 SLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+..+++++++.+..|+++.
T Consensus 321 ~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 321 HLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccchhhhhhcccccccc
Confidence 24445566666666666653
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=4.2e-08 Score=73.55 Aligned_cols=178 Identities=11% Similarity=0.146 Sum_probs=108.6
Q ss_pred CeeeeeecCCccccCchh----hhcccCccEEEeeecccccc----cchhHhhcce------------eeeeceeee---
Q 047050 1 MVINWIQLQPLDCEFPDV----LKTQHQLQLLIISRNQIHGR----ISNWMWDMGV------------RTFTNNFHG--- 57 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~----~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~------------l~~~~~~~~--- 57 (186)
|+.++|++|-+.-..++. ++.+..|++|.|.+|.+... +..++.++.. +..+++..+
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 466777777765555544 34567777777777766421 1112222211 111222222
Q ss_pred --ecCcccccCCCCCEEEccCCccCCc----CchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCC
Q 047050 58 --RIPQTYVQGCNLDFLRLNGNCLERP----IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSN 130 (186)
Q Consensus 58 --~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n 130 (186)
.+...|...+.|+++.+..|.+... +...+..++.|+.||+..|.++.... .+ ......+++|+.+++++|
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L--akaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL--AKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH--HHHhcccchheeeccccc
Confidence 2334566677899999988887531 23456778889999999988763211 00 012233678899999998
Q ss_pred ccCchhh----HHhh-ccCCCCEEEcCCCccccC----ccccccCCCCCceeeccCccc
Q 047050 131 RFQEKIL----EVVG-KLNSLKNSNISHNNLIGG----IPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 131 ~l~~~~~----~~~~-~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l 180 (186)
.+...-. +.+. ..++|+.+.+.+|.|+.. +..++..-+.|..|++++|.+
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8864322 2222 257889999999988743 333456677888999999887
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3.3e-08 Score=78.04 Aligned_cols=86 Identities=24% Similarity=0.268 Sum_probs=46.2
Q ss_pred cccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhc
Q 047050 63 YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGK 142 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 142 (186)
+..+++|++|++++|+++.. ..+..++.|+.|++.+|.++. +..+.. +..|+.+++++|.+...-+.....
T Consensus 114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~-~~~~~~------l~~L~~l~l~~n~i~~ie~~~~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD-ISGLES------LKSLKLLDLSYNRIVDIENDELSE 184 (414)
T ss_pred hhhhhcchheeccccccccc--cchhhccchhhheeccCcchh-ccCCcc------chhhhcccCCcchhhhhhhhhhhh
Confidence 45566666666666666653 334445556666666666652 122222 556666666666665432200344
Q ss_pred cCCCCEEEcCCCccc
Q 047050 143 LNSLKNSNISHNNLI 157 (186)
Q Consensus 143 l~~L~~L~l~~n~~~ 157 (186)
+.+++.+.+..|.+.
T Consensus 185 ~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 185 LISLEELDLGGNSIR 199 (414)
T ss_pred ccchHHHhccCCchh
Confidence 555666666666554
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=3e-08 Score=65.20 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCc
Q 047050 92 NMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFE 171 (186)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 171 (186)
.|+..++++|.+....+.+... ++.++.+++.+|.+.. +|.++..++.|+.++++.|.+. ..|..+..+.++.
T Consensus 54 el~~i~ls~N~fk~fp~kft~k-----f~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIK-----FPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred eEEEEecccchhhhCCHHHhhc-----cchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 3444455555554333322211 3345555555555543 4555555555555555555555 4455555555555
Q ss_pred eeeccCccc
Q 047050 172 SLDLSLNKF 180 (186)
Q Consensus 172 ~L~l~~n~l 180 (186)
.||..+|.+
T Consensus 127 ~Lds~~na~ 135 (177)
T KOG4579|consen 127 MLDSPENAR 135 (177)
T ss_pred HhcCCCCcc
Confidence 555555544
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=8.2e-08 Score=75.83 Aligned_cols=128 Identities=26% Similarity=0.309 Sum_probs=94.1
Q ss_pred HhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcc
Q 047050 43 MWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTS 122 (186)
Q Consensus 43 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L 122 (186)
+..++.+.+..+.....-..+..+++++.+++.+|++.. +...+..+++|++|++++|.|+...+ +.. ++.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~------l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG-LST------LTLL 142 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc-hhh------ccch
Confidence 334444444333333444557788999999999999987 55547889999999999999985433 223 6679
Q ss_pred cEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccc-ccCCCCCceeeccCcccc
Q 047050 123 ATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSS-LRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 123 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~ 181 (186)
+.|++++|.++.. ..+..++.|+.++++.|.+.. +... ...+..++.+++.+|.+.
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh
Confidence 9999999999753 445558899999999999984 3332 467778888889888764
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=5.2e-07 Score=47.91 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=20.4
Q ss_pred cccEEeccCCccCchhhHHhhccCCCCEEEcCCCccc
Q 047050 121 TSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 121 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
+|++|++++|+++. +|..++.+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45666666666654 4445566666666666666655
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1e-06 Score=46.75 Aligned_cols=38 Identities=34% Similarity=0.503 Sum_probs=30.7
Q ss_pred CCCCEEEccCCccCCcCchhhhhcCCCCEEEecCccccc
Q 047050 67 CNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSG 105 (186)
Q Consensus 67 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 105 (186)
++|++|++++|+++. +|..++.+++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 478899999999997 77778899999999999998873
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=6.6e-07 Score=76.35 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=69.0
Q ss_pred eeeeeecCC--ccccCchhhhcccCccEEEeeecccccccchhHhhccee---eeeceeeeecCcccccCCCCCEEEccC
Q 047050 2 VINWIQLQP--LDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TFTNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 2 ~~~~l~~~~--l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
+.|-+..|. +....++.|..++.|+.||+++|.-.+..|+.++++-.| .+...-...+|..+.++..|.+|++..
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 344555554 443444568889999999999988777777777765444 334444557788888888888888877
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNK 102 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~ 102 (186)
+.....++.....+.+|++|.+....
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccchhhhcccccEEEeeccc
Confidence 65544355556667888888776654
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=7.6e-08 Score=63.37 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=56.0
Q ss_pred eeeecCCccccCchhhhc---ccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccc-cCCCCCEEEccCCcc
Q 047050 4 NWIQLQPLDCEFPDVLKT---QHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYV-QGCNLDFLRLNGNCL 79 (186)
Q Consensus 4 ~~l~~~~l~~~~p~~~~~---l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l 79 (186)
+++++|.+. .+++.... ..+|+..++++|.+. ..|+.|. +++.++.+.+++|.+
T Consensus 32 ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk---------------------~fp~kft~kf~t~t~lNl~~nei 89 (177)
T KOG4579|consen 32 LDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK---------------------KFPKKFTIKFPTATTLNLANNEI 89 (177)
T ss_pred cccccchhh-HHHHHHHHHhCCceEEEEecccchhh---------------------hCCHHHhhccchhhhhhcchhhh
Confidence 455555554 45544433 345555567777665 2333332 334567777777777
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 133 (186)
.. +|.++..|+.|+.+++..|.+.-.+.-+.. +.++..|+...|.+.
T Consensus 90 sd-vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~------L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 90 SD-VPEELAAMPALRSLNLRFNPLNAEPRVIAP------LIKLDMLDSPENARA 136 (177)
T ss_pred hh-chHHHhhhHHhhhcccccCccccchHHHHH------HHhHHHhcCCCCccc
Confidence 76 677777777777777777766533222111 444555555555543
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=2.4e-08 Score=81.44 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=80.5
Q ss_pred ecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhh
Q 047050 58 RIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKIL 137 (186)
Q Consensus 58 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 137 (186)
.+..++.-++-++.|++++|+++. + ..+..++.|++||++.|.+. .+|.+.-. -..|+.|.+++|.++. -
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~-----gc~L~~L~lrnN~l~t--L 247 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMV-----GCKLQLLNLRNNALTT--L 247 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchh-----hhhheeeeecccHHHh--h
Confidence 456666677788999999999986 3 37788899999999999887 34422110 1238888888888764 2
Q ss_pred HHhhccCCCCEEEcCCCccccC-ccccccCCCCCceeeccCccc
Q 047050 138 EVVGKLNSLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l 180 (186)
..+.++.+|+.||++.|.+.+. --..++.+..|+.|++.+|++
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 3456788888999998887632 112355667788888888876
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.19 E-value=2.8e-06 Score=62.31 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=18.8
Q ss_pred cCcccEEeccCCccCc----hhhHHhhccCCCCEEEcCCCccc
Q 047050 119 LTTSATIDLSSNRFQE----KILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
+.+|..|++..|.++- .+...++.|+.|+.|.++.|.++
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 3445555555555541 12344444555555555555444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.15 E-value=6.4e-08 Score=79.07 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=105.4
Q ss_pred chhhhcccCccEEEeeecccccccchhHhh----cceeeeece----------eeeecCcccccCCCCCEEEccCCccCC
Q 047050 16 PDVLKTQHQLQLLIISRNQIHGRISNWMWD----MGVRTFTNN----------FHGRIPQTYVQGCNLDFLRLNGNCLER 81 (186)
Q Consensus 16 p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----l~~l~~~~~----------~~~~~~~~~~~l~~L~~L~l~~n~l~~ 81 (186)
|-.+...+.|++|.+.+|.+.. ...+.. ++.+.=++. -.+.+..++... .|.+.++++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn-~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWN-KLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhh-hHhhhhcchhhHHh
Confidence 4566778899999999998753 111111 111100111 112233333332 47888999999986
Q ss_pred cCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcc
Q 047050 82 PIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIP 161 (186)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 161 (186)
.-.++.-++.++.|+++.|++.... ....++.|.+||+++|.+.. +|..-..-..|+.|.+++|.++ .+
T Consensus 179 -mD~SLqll~ale~LnLshNk~~~v~-------~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~-tL- 247 (1096)
T KOG1859|consen 179 -MDESLQLLPALESLNLSHNKFTKVD-------NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALT-TL- 247 (1096)
T ss_pred -HHHHHHHHHHhhhhccchhhhhhhH-------HHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHH-hh-
Confidence 7788888999999999999987432 33448999999999999865 3432222345999999999987 33
Q ss_pred ccccCCCCCceeeccCccccc
Q 047050 162 SSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 162 ~~~~~l~~L~~L~l~~n~l~~ 182 (186)
..+.++++|+.||+++|-+++
T Consensus 248 ~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhc
Confidence 357899999999999998764
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=7.5e-07 Score=66.00 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=83.3
Q ss_pred hhhcccCccEEEeeecccccccchhHhhccee---ee--eceeeee-cCcccccCCCCCEEEccCCccCCcCchhhhh--
Q 047050 18 VLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF--TNNFHGR-IPQTYVQGCNLDFLRLNGNCLERPIPTSLID-- 89 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~--~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-- 89 (186)
-++.+++|+.+.+.++++...+...+.+-..| ++ .+.++.. ..--+..++.|++|.+++|.+.......+..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 34566777777777777665443333322111 11 1111111 1112345666677777776654322222111
Q ss_pred cCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCc-cCchhhHHhhccCCCCEEEcCCCccccCcccc---cc
Q 047050 90 YVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNR-FQEKILEVVGKLNSLKNSNISHNNLIGGIPSS---LR 165 (186)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~ 165 (186)
-.+|+.|++++++-.-.... -....+.++++.+||++.|- ++......|...+.|+++.++.|.- .+|+. +.
T Consensus 285 se~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~ 360 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELN 360 (419)
T ss_pred chhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeec
Confidence 13466666666542100000 01122347888889988864 3444556777788888888888752 45654 45
Q ss_pred CCCCCceeeccCc
Q 047050 166 NLTEFESLDLSLN 178 (186)
Q Consensus 166 ~l~~L~~L~l~~n 178 (186)
..++|.+||+.++
T Consensus 361 s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 361 SKPSLVYLDVFGC 373 (419)
T ss_pred cCcceEEEEeccc
Confidence 5667888888765
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.5e-07 Score=68.43 Aligned_cols=155 Identities=18% Similarity=0.112 Sum_probs=107.3
Q ss_pred cCccEEEeeeccccc----ccchhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCc-cCC-cCchhhhhcCCCCE
Q 047050 23 HQLQLLIISRNQIHG----RISNWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNC-LER-PIPTSLIDYVNMNF 95 (186)
Q Consensus 23 ~~L~~L~l~~n~i~~----~~~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~ 95 (186)
..|+.+|++...|+. .+-+....++.+.+ ++.+.+.+-..+.+-.+|+.++++.+. ++. ...-.+.++..|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358899999988874 22334445566655 666677777778888889999998875 332 12234678889999
Q ss_pred EEecCcccccCCCCCCccchhhhcCcccEEeccCCcc---CchhhHHhhccCCCCEEEcCCCc-cccCccccccCCCCCc
Q 047050 96 LNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRF---QEKILEVVGKLNSLKNSNISHNN-LIGGIPSSLRNLTEFE 171 (186)
Q Consensus 96 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~ 171 (186)
|+++||.+.....+. ...+.-.+++.|+++++.- ...+..-...++.|.+||+++|. ++.....+|.+++.|+
T Consensus 265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 999999876432211 1122246788888888642 23344455668999999999974 4555666788999999
Q ss_pred eeeccCccc
Q 047050 172 SLDLSLNKF 180 (186)
Q Consensus 172 ~L~l~~n~l 180 (186)
++.++.|+.
T Consensus 342 ~lSlsRCY~ 350 (419)
T KOG2120|consen 342 HLSLSRCYD 350 (419)
T ss_pred eeehhhhcC
Confidence 999999873
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.91 E-value=1.8e-05 Score=67.83 Aligned_cols=149 Identities=20% Similarity=0.248 Sum_probs=99.6
Q ss_pred hcccCccEEEeeecccccccchh--Hhhcceeee-ece-eeeecCcc-cccCCCCCEEEccCCccCCcCchhhhhcCCCC
Q 047050 20 KTQHQLQLLIISRNQIHGRISNW--MWDMGVRTF-TNN-FHGRIPQT-YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMN 94 (186)
Q Consensus 20 ~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~l~~-~~~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 94 (186)
.+....+.+.+-+|.+.. ++.. -.++..+.+ .|. ....++.. |..++.|.+||+++|.-.+.+|.+++.+-+|+
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 344667777777776642 2211 124555555 333 13344444 66689999999998876666999999999999
Q ss_pred EEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccc--cCccccccCCCCCce
Q 047050 95 FLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLI--GGIPSSLRNLTEFES 172 (186)
Q Consensus 95 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~ 172 (186)
+|++++..++..+..+.. +..|.+|++..+.....++.....+.+|++|.+...... ...-..+.++.+|+.
T Consensus 599 yL~L~~t~I~~LP~~l~~------Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGN------LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred cccccCCCccccchHHHH------HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 999999988854445555 788899999888765556777777899999988766422 223334455555555
Q ss_pred eec
Q 047050 173 LDL 175 (186)
Q Consensus 173 L~l 175 (186)
+..
T Consensus 673 ls~ 675 (889)
T KOG4658|consen 673 LSI 675 (889)
T ss_pred hee
Confidence 544
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=2.8e-05 Score=54.60 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=74.8
Q ss_pred CCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch-hhHHhhccCC
Q 047050 67 CNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNS 145 (186)
Q Consensus 67 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~ 145 (186)
.+...+|+++|.+.. -..|..++.|++|.+.+|+|....|.+... ++++..|.+++|++... .-+-+..+++
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~-----~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTF-----LPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhh-----ccccceEEecCcchhhhhhcchhccCCc
Confidence 457788999998875 245677888999999999998776643321 67788999999988532 1234556889
Q ss_pred CCEEEcCCCccccC--cc-ccccCCCCCceeeccC
Q 047050 146 LKNSNISHNNLIGG--IP-SSLRNLTEFESLDLSL 177 (186)
Q Consensus 146 L~~L~l~~n~~~~~--~~-~~~~~l~~L~~L~l~~ 177 (186)
|+.|.+-+|.+... .. -.+.++++|+.||+..
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999988887622 11 1367788999998864
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=0.00013 Score=57.07 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=43.3
Q ss_pred hhcccCccEEEeeecccccccchhHhhcceeeeec-eeeeecCcccccCCCCCEEEccCC-ccCCcCchhhhhcCCCCEE
Q 047050 19 LKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTN-NFHGRIPQTYVQGCNLDFLRLNGN-CLERPIPTSLIDYVNMNFL 96 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 96 (186)
+..+++++.|++++|.+.. +|.-...++.|.+.+ .-...+|..+. ++|+.|++++| .+.. +|. .|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s-LP~------sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPVLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG-LPE------SVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCCCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc-ccc------ccceE
Confidence 4558999999999998763 343333455565532 22234454332 36778888777 4443 443 35556
Q ss_pred EecCcc
Q 047050 97 NVGNNK 102 (186)
Q Consensus 97 ~l~~n~ 102 (186)
++..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665544
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.77 E-value=5.2e-05 Score=55.80 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=100.4
Q ss_pred hhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCC----cCchhh-----
Q 047050 17 DVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLER----PIPTSL----- 87 (186)
Q Consensus 17 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~----- 87 (186)
+++..||+++.+++++|-+....|+.+.++ +.+-+.+++|.+++|-++. .+..++
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~----------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~ 149 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDL----------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY 149 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHH----------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHH
Confidence 345678999999999999988888877663 3566678888888887642 233222
Q ss_pred ----hhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch-----hhHHhhccCCCCEEEcCCCcccc
Q 047050 88 ----IDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-----ILEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 88 ----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
.+-+.|+.+.+..|++......... ....+...|..+.+..|.|.-. ....+..+.+|+.||+..|-++-
T Consensus 150 nKKaa~kp~Le~vicgrNRlengs~~~~a-~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 150 NKKAADKPKLEVVICGRNRLENGSKELSA-ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HhhhccCCCceEEEeccchhccCcHHHHH-HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence 3457788999998887532111000 0112235788888888887532 23455567899999999998862
Q ss_pred ----CccccccCCCCCceeeccCcccc
Q 047050 159 ----GIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 159 ----~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.+..+++.++.|+.|.+.+|-++
T Consensus 229 ~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 229 EGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hhHHHHHHHhcccchhhhccccchhhc
Confidence 24445666777888888888664
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=1.5e-05 Score=66.61 Aligned_cols=117 Identities=18% Similarity=0.165 Sum_probs=67.7
Q ss_pred cCccccc-CCCCCEEEccCCccCCc-CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCc-h
Q 047050 59 IPQTYVQ-GCNLDFLRLNGNCLERP-IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQE-K 135 (186)
Q Consensus 59 ~~~~~~~-l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~-~ 135 (186)
+|..++. +|+|+.|.+.+-.+... ......++++|..||+++.+++.. ...+.+.+|+.|.+.+=.+.. .
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhccccHHHHhccCCCCCchh
Confidence 3333333 67888888877666431 223345677888888888776532 122236666666666555542 2
Q ss_pred hhHHhhccCCCCEEEcCCCccccC--cc----ccccCCCCCceeeccCccccc
Q 047050 136 ILEVVGKLNSLKNSNISHNNLIGG--IP----SSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 136 ~~~~~~~l~~L~~L~l~~n~~~~~--~~----~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.-..+..+++|++||++....... +. +.-..++.|+.||.++..+.+
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 233455678888888877655421 11 122346778888887765543
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=3.7e-05 Score=57.24 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=32.5
Q ss_pred cCcccEEeccCCccCchh-hHHhhccCCCCEEEcCCCccccC-ccccccCCCCCceeeccCccccc
Q 047050 119 LTTSATIDLSSNRFQEKI-LEVVGKLNSLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
++++..+-+..|.+...- -..+...+.+..|+++.++|-.. --+++.++++|+.+.++++++..
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 455555555555443321 12222345555666666666422 22345666666666666666543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.35 E-value=0.00047 Score=48.61 Aligned_cols=104 Identities=20% Similarity=0.148 Sum_probs=74.0
Q ss_pred CCEEEccCCccCCcCchhhhhc-CCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCC
Q 047050 69 LDFLRLNGNCLERPIPTSLIDY-VNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLK 147 (186)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~ 147 (186)
-.++++.+.++.. + ..++.+ .+...+++++|.+.. .+.+.. +..|.+|.++.|+|+...|.--.-+++|.
T Consensus 21 e~e~~LR~lkip~-i-enlg~~~d~~d~iDLtdNdl~~-l~~lp~------l~rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPV-I-ENLGATLDQFDAIDLTDNDLRK-LDNLPH------LPRLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccc-h-hhccccccccceecccccchhh-cccCCC------ccccceEEecCCcceeeccchhhhccccc
Confidence 4566777666543 2 223333 357788999998762 223333 78899999999999986666555578899
Q ss_pred EEEcCCCccccC-ccccccCCCCCceeeccCcccc
Q 047050 148 NSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 148 ~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.|.+.+|++... --.-+..++.|+.|.+-+|+++
T Consensus 92 ~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred eEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 999999999732 1223678889999999998765
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.32 E-value=0.00021 Score=52.04 Aligned_cols=85 Identities=20% Similarity=0.180 Sum_probs=48.1
Q ss_pred cccCCCCCEEEccCC--ccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch---hh
Q 047050 63 YVQGCNLDFLRLNGN--CLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK---IL 137 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~---~~ 137 (186)
+..+++|++|.+++| ++.+.+.--...+++|+++++++|+++. +. .+.....+.+|..|++..|..+.. -.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-ls---tl~pl~~l~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LS---TLRPLKELENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-cc---ccchhhhhcchhhhhcccCCccccccHHH
Confidence 456677888888888 4444333334455788888888887763 11 111222256666777776665431 12
Q ss_pred HHhhccCCCCEEEc
Q 047050 138 EVVGKLNSLKNSNI 151 (186)
Q Consensus 138 ~~~~~l~~L~~L~l 151 (186)
..|.-+++|.+++-
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 34444566665543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.15 E-value=0.00025 Score=59.52 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=77.8
Q ss_pred CCCCEEEccCCcc-CCcCchhhhh-cCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 67 CNLDFLRLNGNCL-ERPIPTSLID-YVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 67 ~~L~~L~l~~n~l-~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
.+|++|++++... ...++..++. +|.|+.|.+++-.+...- + .+...++++|..||+|+..++.. ..++.+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F--~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--F--SQLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--H--HHHhhccCccceeecCCCCccCc--HHHhccc
Confidence 3789999988643 3335666654 689999999886653211 1 11233489999999999998763 6788899
Q ss_pred CCCEEEcCCCcccc-CccccccCCCCCceeeccCccc
Q 047050 145 SLKNSNISHNNLIG-GIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 145 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l 180 (186)
+|+.|.+.+=.+.. ..-..+.++++|++||+|....
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 99999888766652 2333578899999999998654
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00068 Score=49.44 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=55.2
Q ss_pred cCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCc--ccccCCCCCCccchhhhcCcccEEeccCCccCch-
Q 047050 59 IPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNN--KLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK- 135 (186)
Q Consensus 59 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~- 135 (186)
+......+..++.+.+.+..++. -..+..+++|++|.++.| ++.+.++- ....+++|+++++++|++...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-----l~e~~P~l~~l~ls~Nki~~ls 107 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEV-----LAEKAPNLKVLNLSGNKIKDLS 107 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCccccccccee-----hhhhCCceeEEeecCCcccccc
Confidence 44444455567777766666653 245667788888888888 44333321 111257888888888887531
Q ss_pred hhHHhhccCCCCEEEcCCCccc
Q 047050 136 ILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 136 ~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
.-.....+.+|..|++..|..+
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ccchhhhhcchhhhhcccCCcc
Confidence 1122334566777777777655
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.87 E-value=0.009 Score=38.98 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=51.7
Q ss_pred hhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEE
Q 047050 17 DVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFL 96 (186)
Q Consensus 17 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 96 (186)
..|.++.+|+.+.+.. .+.. .-...|..+++++.+.+..+ +.......|..+.+++.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~--------------------I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i 63 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKK--------------------IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESI 63 (129)
T ss_dssp TTTTT-TT--EEEETS-T--E--------------------E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEE
T ss_pred HHHhCCCCCCEEEECC-CeeE--------------------eChhhccccccccccccccc-ccccceeeeecccccccc
Confidence 3466677777777664 3321 22334566667888887764 544333456667678888
Q ss_pred EecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCC
Q 047050 97 NVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEF 170 (186)
Q Consensus 97 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 170 (186)
.+..+ +..... ..+....+++.+.+..+ +.......+..+ .++.+.+..+ +...-...|.++..|
T Consensus 64 ~~~~~-~~~i~~-----~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 64 TFPNN-LKSIGD-----NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-ITKIEENAFKNCTKL 128 (129)
T ss_dssp EETST-T-EE-T-----TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TTB--SS----GGG-----
T ss_pred ccccc-cccccc-----ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECCC-ccEECCccccccccC
Confidence 77542 211111 11222566777777654 444344555555 7777776652 332333345554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.82 E-value=0.0059 Score=48.10 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=66.7
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhH-hhcceeeeece-eeeecCcccccCCCCCEEEccCCcc
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWM-WDMGVRTFTNN-FHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
..|+++.|.+. .+|. --.+|+.|.+++|.--...|+.+ ..++.|.+.+. ....+|. +|+.|++..+..
T Consensus 55 ~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 55 GRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIKGSAT 124 (426)
T ss_pred CEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeCCCCC
Confidence 46788888776 6662 23469999998865434555443 35666766332 3334443 466777766553
Q ss_pred CC--cCchhhhhcCCCCEEEecCcccc-c-CCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCC
Q 047050 80 ER--PIPTSLIDYVNMNFLNVGNNKLS-G-PIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHN 154 (186)
Q Consensus 80 ~~--~~~~~~~~l~~L~~L~l~~n~~~-~-~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 154 (186)
.. .+|.. |+.|.+..++.. . ..+. . -..+|++|.+++|.... .|+.+ ..+|+.|+++.+
T Consensus 125 ~~L~~LPss------Lk~L~I~~~n~~~~~~lp~--~-----LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n 187 (426)
T PRK15386 125 DSIKNVPNG------LTSLSINSYNPENQARIDN--L-----ISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIE 187 (426)
T ss_pred cccccCcch------Hhheecccccccccccccc--c-----cCCcccEEEecCCCccc-Ccccc--cccCcEEEeccc
Confidence 21 24443 445554332210 0 0010 0 03567777777766532 33322 246777776654
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00013 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=16.0
Q ss_pred CCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccc
Q 047050 68 NLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLS 104 (186)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 104 (186)
+.+.|++.+|.+.. -.....|+.|+.|.++-|+++
T Consensus 20 ~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HhhhhcccCCCccH--HHHHHhcccceeEEeeccccc
Confidence 34444444444443 122334555555555555554
No 64
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.0027 Score=28.08 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=8.6
Q ss_pred CCEEEcCCCccccCccccc
Q 047050 146 LKNSNISHNNLIGGIPSSL 164 (186)
Q Consensus 146 L~~L~l~~n~~~~~~~~~~ 164 (186)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444443
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.13 E-value=0.0021 Score=28.47 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=11.7
Q ss_pred CccEEEeeecccccccchhH
Q 047050 24 QLQLLIISRNQIHGRISNWM 43 (186)
Q Consensus 24 ~L~~L~l~~n~i~~~~~~~~ 43 (186)
+|+.|++++|.++ .+|.++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 4677777777776 444433
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.0039 Score=46.85 Aligned_cols=37 Identities=30% Similarity=0.367 Sum_probs=16.6
Q ss_pred CCCEEEccCCccCC--cCchhhhhcCCCCEEEecCcccc
Q 047050 68 NLDFLRLNGNCLER--PIPTSLIDYVNMNFLNVGNNKLS 104 (186)
Q Consensus 68 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~ 104 (186)
.++++|+.+|.++. .+...+..++.|++|+++.|.+.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 34455555555442 12222334455555555555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00057 Score=50.67 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=10.6
Q ss_pred hcccCccEEEeeecccc
Q 047050 20 KTQHQLQLLIISRNQIH 36 (186)
Q Consensus 20 ~~l~~L~~L~l~~n~i~ 36 (186)
..|+.|+.|.++-|+|+
T Consensus 38 ~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKIS 54 (388)
T ss_pred HhcccceeEEeeccccc
Confidence 45666666666666665
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.54 E-value=0.072 Score=34.63 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=58.7
Q ss_pred cccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHh
Q 047050 61 QTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 61 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
..|.+.++++.+.+.. .+.......|..+.+++.+.+..+ +..... ..+....+++.+.+.. .+.......|
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~-----~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD-----NAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T-----TTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce-----eeeecccccccccccc-cccccccccc
Confidence 3566777899999875 455534566888889999999775 332111 1222366788999865 4444445677
Q ss_pred hccCCCCEEEcCCCccccCccccccCCCCCceeeccC
Q 047050 141 GKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSL 177 (186)
Q Consensus 141 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 177 (186)
..++.++.+.+..+ +...-...+.+. .++.+.+..
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 77899999999776 442334456666 788887765
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.79 E-value=0.023 Score=23.34 Aligned_cols=14 Identities=43% Similarity=0.468 Sum_probs=6.3
Q ss_pred CCCEEEccCCccCC
Q 047050 68 NLDFLRLNGNCLER 81 (186)
Q Consensus 68 ~L~~L~l~~n~l~~ 81 (186)
+|++|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45566666665543
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.39 E-value=0.00028 Score=56.72 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=110.1
Q ss_pred eeeeeecCCccccCc----hhhhcccCccEEEeeecccccccchhHhhc--------ceeee-eceee----eecCcccc
Q 047050 2 VINWIQLQPLDCEFP----DVLKTQHQLQLLIISRNQIHGRISNWMWDM--------GVRTF-TNNFH----GRIPQTYV 64 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l--------~~l~~-~~~~~----~~~~~~~~ 64 (186)
+.+|+..|.+...-. ..+.....|+.|++++|.+.+.....+.+. +.+.+ .+.+. ..+...+.
T Consensus 90 ~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~ 169 (478)
T KOG4308|consen 90 LHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLE 169 (478)
T ss_pred HHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHh
Confidence 456788887765444 446778999999999999874333322221 11111 33333 23556666
Q ss_pred cCCCCCEEEccCCccCC----cCchhhh----hcCCCCEEEecCcccccCCCCCCcc-chhhhcCc-ccEEeccCCccCc
Q 047050 65 QGCNLDFLRLNGNCLER----PIPTSLI----DYVNMNFLNVGNNKLSGPIPKCKNI-QTERILTT-SATIDLSSNRFQE 134 (186)
Q Consensus 65 ~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~-L~~l~l~~n~l~~ 134 (186)
....+++++++.|.+.. .++..+. ...++++|.+.+|.++.. .+..+ ......+. +..+++..|.+.+
T Consensus 170 ~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~--~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 170 KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSS--SCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChH--HHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 67778888888887631 1223333 467788888888887622 11111 01112333 6668888888864
Q ss_pred h----hhHHhhcc-CCCCEEEcCCCccccC----ccccccCCCCCceeeccCcccc
Q 047050 135 K----ILEVVGKL-NSLKNSNISHNNLIGG----IPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 135 ~----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
. ..+.+... ..++++++..|.|+.. +++.+..++.++.+.++.|++.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 23444445 6778999999988743 4455666778888999888764
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.67 E-value=0.022 Score=25.56 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=14.4
Q ss_pred ccCccEEEeeecccccccchhH
Q 047050 22 QHQLQLLIISRNQIHGRISNWM 43 (186)
Q Consensus 22 l~~L~~L~l~~n~i~~~~~~~~ 43 (186)
+++|+.|++++|.+++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4689999999999876555444
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.99 E-value=0.17 Score=23.03 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=13.3
Q ss_pred CCCCCEEEccCCccCCcCchh
Q 047050 66 GCNLDFLRLNGNCLERPIPTS 86 (186)
Q Consensus 66 l~~L~~L~l~~n~l~~~~~~~ 86 (186)
+++|++|++++|+++. +|..
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHH
Confidence 3567777887777776 4443
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.99 E-value=0.17 Score=23.03 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=13.3
Q ss_pred CCCCCEEEccCCccCCcCchh
Q 047050 66 GCNLDFLRLNGNCLERPIPTS 86 (186)
Q Consensus 66 l~~L~~L~l~~n~l~~~~~~~ 86 (186)
+++|++|++++|+++. +|..
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHH
Confidence 3567777887777776 4443
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.15 E-value=0.008 Score=43.64 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=31.6
Q ss_pred hhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEE
Q 047050 18 VLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLN 97 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 97 (186)
.++.....+.||++.|++- .+..-|..++.+..++++.|.+.- .|..++....+..++
T Consensus 37 ei~~~kr~tvld~~s~r~v---------------------n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~ 94 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV---------------------NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAA 94 (326)
T ss_pred hhhccceeeeehhhhhHHH---------------------hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHH
Confidence 3445556666666666553 222233334444455555555443 455555444444444
Q ss_pred ecCcccc
Q 047050 98 VGNNKLS 104 (186)
Q Consensus 98 l~~n~~~ 104 (186)
...|..+
T Consensus 95 ~~~n~~~ 101 (326)
T KOG0473|consen 95 SHKNNHS 101 (326)
T ss_pred hhccchh
Confidence 4444443
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.12 E-value=0.22 Score=39.89 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCCCCEEEccCCccCCc--CchhhhhcCCCCEEEecCc-ccccCCCCCCccchhhhcCcccEEeccCCc-cCchhhHHhh
Q 047050 66 GCNLDFLRLNGNCLERP--IPTSLIDYVNMNFLNVGNN-KLSGPIPKCKNIQTERILTTSATIDLSSNR-FQEKILEVVG 141 (186)
Q Consensus 66 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~ 141 (186)
.+.++.+.+..+.-... .-......+.|+.|+++++ ......+. ..........+++.+++++.. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45566665555532211 1223344566666666652 11111110 000112224555566666555 3332222222
Q ss_pred c-cCCCCEEEcCCCc-cccC-ccccccCCCCCceeeccCcc
Q 047050 142 K-LNSLKNSNISHNN-LIGG-IPSSLRNLTEFESLDLSLNK 179 (186)
Q Consensus 142 ~-l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~l~~n~ 179 (186)
. +++|+.|.+..+. ++.. +-.....++.|++|+++.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 4566666655444 3322 12223345556666666543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.66 E-value=0.011 Score=42.96 Aligned_cols=87 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred cccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhc
Q 047050 63 YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGK 142 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 142 (186)
+..+.+.+.||++.|++.. +...|+-++.+..++++.|.+.-...++.. ...+..+++..|..+. .|..++.
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~~~~~d~~q------~~e~~~~~~~~n~~~~-~p~s~~k 109 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIKFLPKDAKQ------QRETVNAASHKNNHSQ-QPKSQKK 109 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHhhChhhHHH------HHHHHHHHhhccchhh-CCccccc
Confidence 4445566666666666654 455555566666666666655422223222 2333444444444432 4555555
Q ss_pred cCCCCEEEcCCCccc
Q 047050 143 LNSLKNSNISHNNLI 157 (186)
Q Consensus 143 l~~L~~L~l~~n~~~ 157 (186)
.+.+++++...+.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 666666666555554
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.53 E-value=0.12 Score=36.69 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=55.5
Q ss_pred CCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCC-ccCchhhHHhhccCC
Q 047050 67 CNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSN-RFQEKILEVVGKLNS 145 (186)
Q Consensus 67 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n-~l~~~~~~~~~~l~~ 145 (186)
..++.+|-+++.+...--+.+..++.++.+.+.+|.--+. +.-.......++|+.|++++| +|+..--.++..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD---~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD---WCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh---HHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 3588899999888765556677778888887777653211 100001113678999999976 566555667777788
Q ss_pred CCEEEcCCC
Q 047050 146 LKNSNISHN 154 (186)
Q Consensus 146 L~~L~l~~n 154 (186)
|+.|.+.+=
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 887776553
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.32 E-value=1.1 Score=20.55 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=6.8
Q ss_pred CCCEEEccCCccC
Q 047050 68 NLDFLRLNGNCLE 80 (186)
Q Consensus 68 ~L~~L~l~~n~l~ 80 (186)
+|++|+++.|+++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4555555555553
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=81.65 E-value=1.1 Score=20.62 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=5.7
Q ss_pred CceeeccCcccc
Q 047050 170 FESLDLSLNKFV 181 (186)
Q Consensus 170 L~~L~l~~n~l~ 181 (186)
|+.|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444445555443
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.69 E-value=0.91 Score=21.11 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.9
Q ss_pred cCccEEEeeecccccc
Q 047050 23 HQLQLLIISRNQIHGR 38 (186)
Q Consensus 23 ~~L~~L~l~~n~i~~~ 38 (186)
++|+.|++++|.+...
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 5789999999998643
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.28 E-value=0.31 Score=34.77 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=8.4
Q ss_pred CccEEEeeecccccc
Q 047050 24 QLQLLIISRNQIHGR 38 (186)
Q Consensus 24 ~L~~L~l~~n~i~~~ 38 (186)
.++.+|=+++.|...
T Consensus 102 ~IeaVDAsds~I~~e 116 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE 116 (221)
T ss_pred eEEEEecCCchHHHH
Confidence 455566666666543
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.25 E-value=1.4 Score=35.32 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=33.5
Q ss_pred cCCCCCEEEccCCc-cCCcCchhhhh-cCCCCEEEecCcc-cccCCCCCCccchhhhcCcccEEeccCCcc
Q 047050 65 QGCNLDFLRLNGNC-LERPIPTSLID-YVNMNFLNVGNNK-LSGPIPKCKNIQTERILTTSATIDLSSNRF 132 (186)
Q Consensus 65 ~l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l 132 (186)
.+.+++.++++.+. ++...-..++. +++|+.|.+.+|. ++.. +-......+++|++++++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~----gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDE----GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchh----HHHHHHHhcCcccEEeeecCcc
Confidence 34567777777766 44322333333 5667777755554 2210 0011223356677777776654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.50 E-value=5.2 Score=33.02 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=33.0
Q ss_pred cCcccEEeccCCccCch--hhHHhhccCCCCEEEcCCCccccCccccccCCC--CCceeeccCcccc
Q 047050 119 LTTSATIDLSSNRFQEK--ILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLT--EFESLDLSLNKFV 181 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~ 181 (186)
.+.+..+.|++|++... +-......++|..|+|++|........++.+++ .|++|-+.+|++.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45556666777766431 222233356677777777722222233344433 4566777777654
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.71 E-value=5.8 Score=17.80 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=10.9
Q ss_pred ccCccEEEeeecc
Q 047050 22 QHQLQLLIISRNQ 34 (186)
Q Consensus 22 l~~L~~L~l~~n~ 34 (186)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4789999999985
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.35 E-value=25 Score=35.10 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=21.9
Q ss_pred EecCcccccCCCCCCccchhhhcCcccEEeccCCccC
Q 047050 97 NVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 97 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 133 (186)
|+++|+|+...+. .+..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g-----~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEG-----ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChH-----HhccCCCceEEEeeCCccc
Confidence 4678888744331 2223788999999999886
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.14 E-value=20 Score=29.83 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=6.8
Q ss_pred cCccEEEeeecccc
Q 047050 23 HQLQLLIISRNQIH 36 (186)
Q Consensus 23 ~~L~~L~l~~n~i~ 36 (186)
+.+..+.+++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 44445555555543
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=34.21 E-value=26 Score=28.22 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=18.8
Q ss_pred cCCCCEEEcCCCccc-cCccccccCCCCCceeeccCc
Q 047050 143 LNSLKNSNISHNNLI-GGIPSSLRNLTEFESLDLSLN 178 (186)
Q Consensus 143 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n 178 (186)
+..+..+.+.++... ...-+.+..++.|+.+++-++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 344556666555432 223334555666666666554
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.80 E-value=47 Score=33.40 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=13.8
Q ss_pred ccCCccCCcCchhhhhcCCCCEEEecCccc
Q 047050 74 LNGNCLERPIPTSLIDYVNMNFLNVGNNKL 103 (186)
Q Consensus 74 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 103 (186)
|++|+|+...+..|..+++|+.|++.+|.+
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 444555443333344444555555555443
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=22.73 E-value=42 Score=15.39 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=11.1
Q ss_pred hhhcccCccEEEeee
Q 047050 18 VLKTQHQLQLLIISR 32 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~ 32 (186)
.|..+++|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 356788999888654
Done!