Query 047050
Match_columns 186
No_of_seqs 134 out of 1248
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 12:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9E-28 3.1E-32 200.1 16.0 108 1-108 444-555 (768)
2 1ogq_A PGIP-2, polygalacturona 99.9 3.6E-27 1.2E-31 177.7 13.6 185 1-186 78-286 (313)
3 3rgz_A Protein brassinosteroid 99.9 6.3E-27 2.1E-31 195.0 15.9 180 1-186 468-722 (768)
4 4fcg_A Uncharacterized protein 99.9 9.6E-27 3.3E-31 176.5 13.7 177 1-186 106-295 (328)
5 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-26 8.4E-31 173.2 14.5 178 1-185 52-261 (313)
6 4fcg_A Uncharacterized protein 99.9 6.4E-24 2.2E-28 161.0 16.8 173 1-181 129-314 (328)
7 1ozn_A Reticulon 4 receptor; N 99.9 6.4E-24 2.2E-28 157.8 12.5 175 1-181 34-214 (285)
8 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-24 2.5E-28 157.4 12.8 178 1-184 58-241 (285)
9 2o6q_A Variable lymphocyte rec 99.9 6.8E-23 2.3E-27 151.3 14.3 177 1-183 39-220 (270)
10 3m19_A Variable lymphocyte rec 99.9 8.9E-23 3E-27 149.1 14.5 172 3-183 18-194 (251)
11 3v47_A TOLL-like receptor 5B a 99.9 2.3E-23 8E-28 163.8 11.9 179 1-185 156-412 (455)
12 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.7E-27 149.8 15.0 175 1-185 43-222 (272)
13 4eco_A Uncharacterized protein 99.9 1.1E-23 3.6E-28 172.4 8.4 176 1-185 208-419 (636)
14 4eco_A Uncharacterized protein 99.9 6.9E-24 2.4E-28 173.4 7.3 176 2-185 84-347 (636)
15 1p9a_G Platelet glycoprotein I 99.9 1.7E-22 6E-27 150.6 13.3 175 1-182 33-209 (290)
16 2z66_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 153.3 10.7 181 1-182 54-262 (306)
17 3zyi_A Leucine-rich repeat-con 99.9 3.3E-22 1.1E-26 157.5 14.3 176 1-183 77-281 (452)
18 3zyj_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 156.8 14.1 175 2-183 67-270 (440)
19 2z66_A Variable lymphocyte rec 99.9 2.4E-22 8.3E-27 150.6 12.0 184 1-185 30-240 (306)
20 1xku_A Decorin; proteoglycan, 99.9 6E-22 2.1E-26 150.0 14.1 180 2-182 55-277 (330)
21 2z62_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 147.1 12.3 179 1-185 30-241 (276)
22 3v47_A TOLL-like receptor 5B a 99.9 5.5E-22 1.9E-26 156.0 13.3 94 84-183 292-386 (455)
23 3rfs_A Internalin B, repeat mo 99.9 2E-22 6.8E-27 148.9 10.0 171 1-186 65-240 (272)
24 2id5_A Lingo-1, leucine rich r 99.9 3.2E-22 1.1E-26 158.4 11.9 179 1-185 34-217 (477)
25 4ecn_A Leucine-rich repeat pro 99.9 9.7E-23 3.3E-27 170.9 8.9 172 2-181 326-586 (876)
26 4ecn_A Leucine-rich repeat pro 99.9 2.2E-22 7.5E-27 168.8 10.3 175 1-185 450-661 (876)
27 1wwl_A Monocyte differentiatio 99.9 1.7E-22 5.8E-27 152.1 8.0 175 1-181 97-287 (312)
28 3zyi_A Leucine-rich repeat-con 99.9 9.6E-22 3.3E-26 154.8 12.1 174 7-185 62-259 (452)
29 3vq2_A TLR4, TOLL-like recepto 99.9 6.2E-22 2.1E-26 160.8 11.3 181 1-183 352-560 (606)
30 3vq2_A TLR4, TOLL-like recepto 99.9 5.6E-22 1.9E-26 161.0 11.0 179 1-181 330-534 (606)
31 3t6q_A CD180 antigen; protein- 99.9 1.4E-21 4.7E-26 158.7 13.2 119 63-185 421-540 (606)
32 2o6q_A Variable lymphocyte rec 99.9 2.7E-21 9.3E-26 142.7 13.6 173 2-183 19-196 (270)
33 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5.1E-26 158.6 13.3 180 1-181 77-314 (597)
34 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-21 6.2E-26 147.5 12.6 179 1-182 56-278 (332)
35 1p9a_G Platelet glycoprotein I 99.9 3.3E-21 1.1E-25 143.7 13.4 172 1-185 12-188 (290)
36 2z63_A TOLL-like receptor 4, v 99.9 1.5E-21 5E-26 157.3 12.2 178 1-185 349-535 (570)
37 1wwl_A Monocyte differentiatio 99.9 4.5E-22 1.5E-26 149.8 8.0 179 2-186 66-270 (312)
38 3t6q_A CD180 antigen; protein- 99.9 1.5E-21 5.1E-26 158.5 11.4 178 1-185 378-564 (606)
39 3o6n_A APL1; leucine-rich repe 99.9 4.1E-21 1.4E-25 148.5 13.1 180 1-181 71-308 (390)
40 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.5E-26 140.1 11.0 175 1-185 33-221 (239)
41 3zyj_A Leucine-rich repeat-con 99.9 4.6E-21 1.6E-25 150.5 12.9 174 6-184 50-247 (440)
42 2z80_A TOLL-like receptor 2, v 99.9 1.2E-21 4.2E-26 149.6 8.8 183 2-185 79-318 (353)
43 2v70_A SLIT-2, SLIT homolog 2 99.9 5.1E-21 1.7E-25 137.3 11.4 153 3-184 15-169 (220)
44 2v9t_B SLIT homolog 2 protein 99.9 9.6E-21 3.3E-25 135.9 12.6 150 4-182 16-166 (220)
45 2ft3_A Biglycan; proteoglycan, 99.9 8E-21 2.7E-25 143.9 12.4 177 2-185 36-257 (332)
46 2o6s_A Variable lymphocyte rec 99.9 4.4E-21 1.5E-25 136.3 10.3 164 6-185 14-182 (208)
47 3m19_A Variable lymphocyte rec 99.8 1.6E-20 5.4E-25 137.2 13.4 157 23-185 14-172 (251)
48 2z7x_B TOLL-like receptor 1, v 99.8 2.4E-20 8.1E-25 149.0 14.7 92 88-185 321-416 (520)
49 2id5_A Lingo-1, leucine rich r 99.8 1.3E-20 4.4E-25 149.1 13.0 177 1-183 130-335 (477)
50 1ziw_A TOLL-like receptor 3; i 99.8 1.3E-20 4.5E-25 154.9 13.5 184 1-184 383-600 (680)
51 1ziw_A TOLL-like receptor 3; i 99.8 3.3E-20 1.1E-24 152.5 15.8 161 1-167 27-194 (680)
52 2z7x_B TOLL-like receptor 1, v 99.8 9.9E-21 3.4E-25 151.2 11.8 179 1-183 249-483 (520)
53 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-20 3.7E-25 159.0 12.1 179 1-185 26-221 (844)
54 2z80_A TOLL-like receptor 2, v 99.8 1.3E-21 4.6E-26 149.4 5.7 174 1-183 54-237 (353)
55 1xku_A Decorin; proteoglycan, 99.8 3.2E-20 1.1E-24 140.5 13.2 179 2-185 34-256 (330)
56 3oja_A Leucine-rich immune mol 99.8 3.5E-21 1.2E-25 153.0 8.1 170 1-181 60-250 (487)
57 4ezg_A Putative uncharacterize 99.8 3.4E-20 1.1E-24 130.8 12.2 113 60-182 81-195 (197)
58 3oja_B Anopheles plasmodium-re 99.8 3.2E-20 1.1E-24 150.8 13.5 176 1-182 53-292 (597)
59 3e6j_A Variable lymphocyte rec 99.8 6.8E-20 2.3E-24 132.2 13.3 151 4-184 24-175 (229)
60 3o53_A Protein LRIM1, AGAP0063 99.8 5.4E-21 1.9E-25 144.1 7.7 170 1-181 60-250 (317)
61 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 128.9 14.1 154 26-185 10-165 (208)
62 3o6n_A APL1; leucine-rich repe 99.8 6.1E-20 2.1E-24 141.9 13.4 174 1-182 47-286 (390)
63 1h6u_A Internalin H; cell adhe 99.8 1.3E-19 4.4E-24 136.2 14.0 169 2-182 44-231 (308)
64 2z81_A CD282 antigen, TOLL-lik 99.8 4E-21 1.4E-25 154.3 6.0 175 1-182 28-210 (549)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-20 4.4E-25 152.1 8.8 137 46-184 355-513 (562)
66 2z63_A TOLL-like receptor 4, v 99.8 6.9E-20 2.4E-24 147.6 12.7 175 2-185 328-511 (570)
67 4glp_A Monocyte differentiatio 99.8 5.6E-20 1.9E-24 138.1 11.1 177 1-182 93-286 (310)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-19 4.8E-24 146.0 14.2 91 88-184 350-444 (562)
69 1h6u_A Internalin H; cell adhe 99.8 1.9E-19 6.4E-24 135.3 13.9 147 19-180 37-185 (308)
70 2z81_A CD282 antigen, TOLL-lik 99.8 5.3E-20 1.8E-24 147.8 11.3 181 1-185 312-514 (549)
71 1h6t_A Internalin B; cell adhe 99.8 2.8E-19 9.7E-24 133.3 13.6 166 1-182 48-214 (291)
72 3oja_A Leucine-rich immune mol 99.8 7.3E-20 2.5E-24 145.5 10.5 174 1-182 36-228 (487)
73 4fmz_A Internalin; leucine ric 99.8 5.7E-19 2E-23 134.3 14.7 167 1-181 157-346 (347)
74 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-19 5.5E-24 146.7 12.2 152 24-181 53-214 (635)
75 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.8E-24 139.3 10.1 170 3-181 22-202 (361)
76 2z62_A TOLL-like receptor 4, v 99.8 2E-19 6.7E-24 133.0 11.1 160 14-181 21-190 (276)
77 4fmz_A Internalin; leucine ric 99.8 4.9E-19 1.7E-23 134.7 13.3 178 1-185 134-328 (347)
78 4glp_A Monocyte differentiatio 99.8 1.1E-19 3.9E-24 136.5 9.6 173 1-182 119-308 (310)
79 2xwt_C Thyrotropin receptor; s 99.8 4.5E-19 1.5E-23 128.4 11.0 169 1-179 57-237 (239)
80 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-18 8.1E-23 144.8 15.7 63 119-181 313-375 (844)
81 1m9s_A Internalin B; cell inva 99.8 1.4E-18 4.9E-23 141.1 13.8 167 1-183 45-212 (605)
82 3o53_A Protein LRIM1, AGAP0063 99.8 4.7E-19 1.6E-23 133.5 10.1 176 1-185 36-230 (317)
83 1xeu_A Internalin C; cellular 99.8 1.7E-18 5.8E-23 127.3 12.2 163 4-183 24-187 (263)
84 1o6v_A Internalin A; bacterial 99.8 3.8E-18 1.3E-22 134.8 14.8 59 119-181 330-388 (466)
85 1w8a_A SLIT protein; signaling 99.8 9.5E-19 3.2E-23 122.9 10.0 130 26-184 11-142 (192)
86 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-18 7.3E-23 123.6 12.1 133 2-160 35-169 (220)
87 2xot_A Amphoterin-induced prot 99.8 2.2E-18 7.4E-23 132.1 12.6 150 25-182 20-177 (361)
88 2ell_A Acidic leucine-rich nuc 99.8 2.2E-18 7.7E-23 118.3 11.0 134 21-181 22-160 (168)
89 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.5E-23 123.5 11.4 132 1-158 34-166 (220)
90 3e6j_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 123.2 12.1 133 1-160 42-175 (229)
91 1o6v_A Internalin A; bacterial 99.8 5.5E-18 1.9E-22 133.9 14.1 168 1-185 201-370 (466)
92 3cvr_A Invasion plasmid antige 99.8 1.5E-18 5.1E-23 139.9 10.4 103 65-185 138-247 (571)
93 2ca6_A RAN GTPase-activating p 99.8 1.6E-19 5.4E-24 139.4 4.1 66 119-184 243-319 (386)
94 3bz5_A Internalin-J, INLJ; leu 99.8 4E-18 1.4E-22 134.4 12.0 146 1-159 87-248 (457)
95 4g8a_A TOLL-like receptor 4; l 99.8 3.1E-18 1E-22 139.2 11.5 125 52-182 454-581 (635)
96 3goz_A Leucine-rich repeat-con 99.8 7.7E-19 2.6E-23 134.6 7.1 180 2-182 25-239 (362)
97 1dce_A Protein (RAB geranylger 99.8 6.8E-20 2.3E-24 147.9 1.2 172 2-185 352-550 (567)
98 2ca6_A RAN GTPase-activating p 99.8 3.4E-19 1.2E-23 137.6 4.8 111 67-182 159-288 (386)
99 4ezg_A Putative uncharacterize 99.8 1.8E-17 6E-22 116.8 13.0 132 19-182 40-173 (197)
100 1jl5_A Outer protein YOPM; leu 99.8 9.8E-18 3.4E-22 132.1 12.6 138 1-157 133-270 (454)
101 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-17 6E-22 130.8 13.9 170 1-185 44-228 (457)
102 3goz_A Leucine-rich repeat-con 99.8 1.5E-18 5.3E-23 132.9 7.5 179 3-182 2-210 (362)
103 2ast_B S-phase kinase-associat 99.7 7.3E-19 2.5E-23 133.1 5.0 98 3-101 74-178 (336)
104 4b8c_D Glucose-repressible alc 99.7 4.8E-19 1.6E-23 146.7 4.2 118 15-140 216-336 (727)
105 2ell_A Acidic leucine-rich nuc 99.7 7.2E-18 2.5E-22 115.8 9.3 111 66-183 23-135 (168)
106 4ay9_X Follicle-stimulating ho 99.7 7.1E-18 2.4E-22 128.7 10.2 177 1-185 32-218 (350)
107 1jl5_A Outer protein YOPM; leu 99.7 8.4E-18 2.9E-22 132.5 10.6 167 1-186 217-416 (454)
108 1w8a_A SLIT protein; signaling 99.7 1.2E-17 4.3E-22 117.2 10.2 131 3-161 12-143 (192)
109 2wfh_A SLIT homolog 2 protein 99.7 2.9E-17 9.9E-22 115.4 12.0 127 26-182 13-140 (193)
110 1ds9_A Outer arm dynein; leuci 99.7 1.3E-19 4.5E-24 127.8 0.0 148 2-181 21-185 (198)
111 2ast_B S-phase kinase-associat 99.7 1.8E-18 6E-23 131.0 5.7 173 1-178 95-282 (336)
112 2o6r_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 113.4 11.1 132 25-185 9-141 (177)
113 2je0_A Acidic leucine-rich nuc 99.7 1.3E-17 4.6E-22 112.2 8.7 130 21-177 15-149 (149)
114 3cvr_A Invasion plasmid antige 99.7 2.4E-17 8.3E-22 132.9 11.5 156 1-185 61-223 (571)
115 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.6E-22 121.3 10.1 154 13-183 11-165 (263)
116 1h6t_A Internalin B; cell adhe 99.7 5.2E-17 1.8E-21 121.0 11.5 149 19-182 42-192 (291)
117 2je0_A Acidic leucine-rich nuc 99.7 1.9E-17 6.5E-22 111.5 8.0 113 66-185 16-130 (149)
118 3g06_A SSPH2 (leucine-rich rep 99.7 5.4E-17 1.8E-21 132.2 11.9 62 119-185 240-301 (622)
119 2wfh_A SLIT homolog 2 protein 99.7 1E-16 3.4E-21 112.7 10.7 126 3-158 14-140 (193)
120 1z7x_W Ribonuclease inhibitor; 99.7 5.5E-18 1.9E-22 133.3 2.7 180 2-182 202-412 (461)
121 1m9s_A Internalin B; cell inva 99.7 8E-17 2.7E-21 130.9 8.4 160 6-182 28-189 (605)
122 4b8c_D Glucose-repressible alc 99.7 5.6E-17 1.9E-21 134.4 7.3 118 58-185 215-333 (727)
123 1z7x_W Ribonuclease inhibitor; 99.7 7.7E-18 2.6E-22 132.5 2.1 105 1-105 87-213 (461)
124 1a9n_A U2A', U2A'; complex (nu 99.7 8.6E-17 2.9E-21 111.3 7.0 133 18-181 14-153 (176)
125 3g06_A SSPH2 (leucine-rich rep 99.7 1.4E-15 4.9E-20 123.8 13.8 57 120-185 221-277 (622)
126 2o6r_A Variable lymphocyte rec 99.7 9.8E-16 3.4E-20 105.9 11.1 130 3-161 11-141 (177)
127 1dce_A Protein (RAB geranylger 99.7 1.7E-17 5.8E-22 134.0 2.1 156 11-175 397-567 (567)
128 1a9n_A U2A', U2A'; complex (nu 99.6 2.2E-15 7.5E-20 104.1 9.2 128 1-157 21-153 (176)
129 1ds9_A Outer arm dynein; leuci 99.6 1E-17 3.5E-22 118.1 -3.3 142 19-185 14-157 (198)
130 3g39_A Variable lymphocyte rec 99.6 7.2E-15 2.5E-19 101.1 9.4 103 70-181 12-115 (170)
131 2r9u_A Variable lymphocyte rec 99.6 2.9E-14 1E-18 98.4 9.7 93 57-157 25-118 (174)
132 4ay9_X Follicle-stimulating ho 99.5 3.8E-14 1.3E-18 108.1 11.1 155 1-162 56-219 (350)
133 3g39_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 96.5 9.7 107 24-159 10-117 (170)
134 2r9u_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 96.4 9.0 102 26-134 15-119 (174)
135 3un9_A NLR family member X1; l 99.5 6.4E-15 2.2E-19 113.3 0.8 37 1-37 74-115 (372)
136 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.3E-17 99.3 9.2 92 58-157 23-116 (347)
137 3ogk_B Coronatine-insensitive 99.4 2.3E-13 7.9E-18 110.0 3.5 182 1-183 295-528 (592)
138 2ifg_A High affinity nerve gro 99.4 2.9E-12 9.8E-17 97.4 9.1 102 5-134 14-117 (347)
139 3ogk_B Coronatine-insensitive 99.3 2.1E-12 7E-17 104.5 5.3 129 21-152 110-251 (592)
140 3sb4_A Hypothetical leucine ri 99.2 3.6E-11 1.2E-15 90.8 9.2 101 66-174 225-327 (329)
141 2p1m_B Transport inhibitor res 99.2 4.2E-12 1.4E-16 102.6 3.3 180 1-181 291-519 (594)
142 3un9_A NLR family member X1; l 99.2 4.2E-12 1.4E-16 97.6 1.9 164 1-181 103-283 (372)
143 3sb4_A Hypothetical leucine ri 99.2 5.1E-11 1.7E-15 90.0 7.6 84 90-181 225-310 (329)
144 2p1m_B Transport inhibitor res 99.1 1.4E-10 4.7E-15 93.8 7.8 84 19-102 101-195 (594)
145 2ra8_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 83.5 10.3 165 16-182 132-321 (362)
146 1io0_A Tropomodulin; LRR prote 98.8 3.4E-09 1.1E-13 73.6 5.1 71 18-104 31-106 (185)
147 4fdw_A Leucine rich hypothetic 98.8 3.6E-08 1.2E-12 76.5 10.9 169 10-181 167-358 (401)
148 1io0_A Tropomodulin; LRR prote 98.8 2.1E-09 7.1E-14 74.7 3.4 120 60-181 29-164 (185)
149 4fdw_A Leucine rich hypothetic 98.8 6.4E-08 2.2E-12 75.0 10.9 163 11-178 146-333 (401)
150 2ra8_A Uncharacterized protein 98.6 7.5E-08 2.6E-12 73.6 7.5 162 14-179 163-341 (362)
151 3rw6_A Nuclear RNA export fact 98.5 2.6E-07 9E-12 67.6 6.6 82 88-174 167-257 (267)
152 3rw6_A Nuclear RNA export fact 98.5 3.5E-07 1.2E-11 66.9 6.5 67 117-185 167-237 (267)
153 3e4g_A ATP synthase subunit S, 98.1 3.7E-06 1.3E-10 57.5 5.3 92 59-155 53-150 (176)
154 3e4g_A ATP synthase subunit S, 98.0 6.4E-06 2.2E-10 56.3 4.0 96 14-134 52-154 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.8 2E-05 6.7E-10 54.9 4.1 117 63-180 37-169 (197)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 9E-05 3.1E-09 51.6 6.7 121 19-157 37-170 (197)
157 4gt6_A Cell surface protein; l 97.7 0.00026 8.8E-09 54.5 9.5 111 59-180 280-390 (394)
158 4h09_A Hypothetical leucine ri 97.6 0.00076 2.6E-08 51.4 10.6 108 61-176 234-341 (379)
159 4fs7_A Uncharacterized protein 97.5 0.001 3.5E-08 51.1 10.4 107 60-177 269-375 (394)
160 4gt6_A Cell surface protein; l 97.2 0.0033 1.1E-07 48.2 10.1 110 61-179 259-368 (394)
161 4fs7_A Uncharacterized protein 97.1 0.0039 1.3E-07 47.8 9.2 59 118-178 295-353 (394)
162 3rfe_A Platelet glycoprotein I 97.0 0.0015 5.3E-08 42.2 5.8 56 70-133 11-68 (130)
163 3rfe_A Platelet glycoprotein I 97.0 0.0011 3.7E-08 42.9 4.9 57 94-157 11-68 (130)
164 4h09_A Hypothetical leucine ri 96.9 0.0067 2.3E-07 46.1 9.1 142 17-168 211-356 (379)
165 2lz0_A Uncharacterized protein 48.2 16 0.00056 21.8 2.9 36 118-154 18-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=9e-28 Score=200.06 Aligned_cols=108 Identities=27% Similarity=0.382 Sum_probs=75.0
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.++++.|.+.+.+|..++.+++|+.|++++|.+.+.+|.++..++.+ .+ .|.+.+.+|..+..+++|++|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 4566777777777777777777777777777777777777766655444 33 5666666777777777777777777
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP 108 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 108 (186)
|++.+.+|..++.+++|++|++++|.+.+.+|
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 77776677777777777777777777665554
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=3.6e-27 Score=177.70 Aligned_cols=185 Identities=23% Similarity=0.375 Sum_probs=145.5
Q ss_pred Ceeeeeec-CCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQL-QPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~-~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
|+.+++++ |.+.+.+|+.|+++++|+.|++++|.+.+.+|+.+..++.+ .+ +|.+.+.+|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 56788884 88888888888889999999999998888888877765554 44 666776788888888888888888
Q ss_pred CCccCCcCchhhhhcC-CCCEEEecCcccccCCCC-CCc-----------------cchhhhcCcccEEeccCCccCchh
Q 047050 76 GNCLERPIPTSLIDYV-NMNFLNVGNNKLSGPIPK-CKN-----------------IQTERILTTSATIDLSSNRFQEKI 136 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~-~~~-----------------~~~~~~~~~L~~l~l~~n~l~~~~ 136 (186)
+|.+++.+|..++.++ +|+.|++++|.+.+..|. +.. ...+..+++|+.|++++|.+++..
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 8888866888888887 788888888887765552 111 012334678888888888887655
Q ss_pred hHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCCC
Q 047050 137 LEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 137 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~ 186 (186)
+. +..+++|+.|++++|.+++.+|..++.+++|+.|++++|+++|.+|+
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 54 67788899999999999888899999999999999999999988884
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=6.3e-27 Score=195.00 Aligned_cols=180 Identities=29% Similarity=0.459 Sum_probs=131.4
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.++++.|.+.+.+|..++.+++|+.|++++|.+.+.+|+++..+..+ .+ +|.+.+.+|..+.++++|++|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 4567777777777777777777777777777777777777776665444 33 6666677777777777777777777
Q ss_pred CccCCcCchhhh--------------------------------------------------------------------
Q 047050 77 NCLERPIPTSLI-------------------------------------------------------------------- 88 (186)
Q Consensus 77 n~l~~~~~~~~~-------------------------------------------------------------------- 88 (186)
|.+.+.+|..+.
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 777655554432
Q ss_pred --hcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccccc
Q 047050 89 --DYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLR 165 (186)
Q Consensus 89 --~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 165 (186)
.+++|+.|++++|++++.+| .+.. ++.|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..++
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGS------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGG------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred hhccccccEEECcCCcccccCCHHHhc------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 23456777777777777666 3333 67778888888888877888888888888888888888878888888
Q ss_pred CCCCCceeeccCccccccCCC
Q 047050 166 NLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 166 ~l~~L~~L~l~~n~l~~~ip~ 186 (186)
+++.|++||+++|+++|.||+
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCEEECcCCcccccCCC
Confidence 888888888888888888874
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.6e-27 Score=176.48 Aligned_cols=177 Identities=21% Similarity=0.278 Sum_probs=142.1
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCccccc---------CC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQ---------GC 67 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~---------l~ 67 (186)
|+.++++.|.+. .+|..++.+++|+.|++++|.+. .+|..+..+..| .+ +|+..+.+|..+.. ++
T Consensus 106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~ 183 (328)
T 4fcg_A 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183 (328)
T ss_dssp CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence 467778888887 78888888888888888888877 667666655444 44 44666777766554 88
Q ss_pred CCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCC
Q 047050 68 NLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLK 147 (186)
Q Consensus 68 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~ 147 (186)
+|++|++++|.++. +|..++.+++|+.|++++|.+.+..+.+.. +++|++|++++|.+.+.+|.+++.+++|+
T Consensus 184 ~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHH------LPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp TCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGG------CTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhcc------CCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 88888888888884 788888888888888888888864444444 78899999999998888888888999999
Q ss_pred EEEcCCCccccCccccccCCCCCceeeccCccccccCCC
Q 047050 148 NSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 148 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~ 186 (186)
.|++++|.+.+.+|..++++++|+.|++++|++.+.+|+
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 999999988888998999999999999999999888884
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2.5e-26 Score=173.15 Aligned_cols=178 Identities=21% Similarity=0.258 Sum_probs=131.6
Q ss_pred CeeeeeecCCccc--cCchhhhcccCccEEEeee-cccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEE
Q 047050 1 MVINWIQLQPLDC--EFPDVLKTQHQLQLLIISR-NQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLR 73 (186)
Q Consensus 1 l~~~~l~~~~l~~--~~p~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~ 73 (186)
++.+++++|.+.+ .+|+.++++++|+.|++++ |.+.+.+|..+..++.| .+ +|.+.+.+|..+.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3578999999999 9999999999999999995 99999999888776655 44 7777789999999999999999
Q ss_pred ccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcC-cccEEeccCCccCc-----------------
Q 047050 74 LNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILT-TSATIDLSSNRFQE----------------- 134 (186)
Q Consensus 74 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~-~L~~l~l~~n~l~~----------------- 134 (186)
+++|.+++.+|..++.+++|++|++++|.+++..| .+.. +. +|+++++++|.+++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls 205 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS------FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS 205 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC------CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh------hhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence 99999998799999999999999999999987666 3332 33 45555555555544
Q ss_pred ------hhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 135 ------KILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 135 ------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
..+..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC
Confidence 4444444455555555555555433332 4445555555555555555554
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.4e-24 Score=160.96 Aligned_cols=173 Identities=11% Similarity=0.079 Sum_probs=154.4
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhH------------hhcceeeeeceeeeecCcccccCCC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWM------------WDMGVRTFTNNFHGRIPQTYVQGCN 68 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~------------~~l~~l~~~~~~~~~~~~~~~~l~~ 68 (186)
|+.|+++.|.+. .+|+.++.+++|+.|++++|.+.+.+|..+ ..++.+.+.++-...+|..+.++++
T Consensus 129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 207 (328)
T 4fcg_A 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN 207 (328)
T ss_dssp CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTT
T ss_pred CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCC
Confidence 578999999999 899999999999999999998888888764 4566667754444589999999999
Q ss_pred CCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCC
Q 047050 69 LDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLK 147 (186)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~ 147 (186)
|++|++++|.+++ +|..++.+++|+.|++++|.+.+..| .+.. +++|++|++++|.+.+.+|.++..+++|+
T Consensus 208 L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 208 LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC------CCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 9999999999997 78889999999999999999988877 4445 89999999999999999999999999999
Q ss_pred EEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 148 NSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 148 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.|++++|.+.+.+|..++++++++.+++..+.+.
T Consensus 281 ~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999987654
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6.4e-24 Score=157.79 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=95.1
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeeee-ce-eeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTFT-NN-FHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~~-~~-~~~~~~~~~~~l~~L~~L~l~ 75 (186)
++.++++.|.+.+..++.|+.+++|+.|++++|.+.+..+..+..+ +.+.+. |. +....+..+..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 3556677777765555667777777777777777766555555443 333443 32 333335566666667777777
Q ss_pred CCccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCC
Q 047050 76 GNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHN 154 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 154 (186)
+|.++...+..+..+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------CCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 7666664455566666666676666666544332 222 444444444444444433333444444444444444
Q ss_pred ccccCccccccCCCCCceeeccCcccc
Q 047050 155 NLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.+++..|..++++++|+.|++++|.++
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccCHhHccCcccccEeeCCCCcCC
Confidence 444333444444444444444444443
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=7.4e-24 Score=157.44 Aligned_cols=178 Identities=19% Similarity=0.181 Sum_probs=152.1
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecc-cccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQ-IHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
|+.++++.|.+.+..|..|+.+++|+.|++++|. +....+..+..+ +.+.+ +|.+.+..+..+.++++|++|+++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 5788999999998889999999999999999997 776667776655 44455 666666667888999999999999
Q ss_pred CCccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCC
Q 047050 76 GNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHN 154 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 154 (186)
+|.++...+..++.+++|+.|++++|.+.+..+. +.. +++|+++++++|.+++..+..+..+++|+.|++++|
T Consensus 138 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC------ccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 9999985556689999999999999999865553 444 889999999999999988999999999999999999
Q ss_pred ccccCccccccCCCCCceeeccCccccccC
Q 047050 155 NLIGGIPSSLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i 184 (186)
.+++..+..+..+++|+.+++++|++.++.
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 999766677999999999999999987653
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.8e-23 Score=151.26 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=142.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHh---hcceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMW---DMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+.+..+..|+++++|+.|++++|.+++..+..+. .++.+.+ +|.+.+..+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 46788899999866667899999999999999999865555544 4555566 4555554455678889999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
|.++...+..|+.+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 999986667788999999999999998865543 344 7899999999999988777778889999999999999
Q ss_pred cccCccccccCCCCCceeeccCcccccc
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+++..+..+..+++|+.|++++|++...
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 9865566688899999999999988654
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=8.9e-23 Score=149.12 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=137.7
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcc---eeee-eceeeeecCcccccCCCCCEEEccCCc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMG---VRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNC 78 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~---~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~ 78 (186)
.++.+.+.+. .+|..+. +.++.|++++|.+.+..+..+..+. .+.+ +|.+.+..+..+.++++|++|++++|.
T Consensus 18 ~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 3455666666 6666554 5778888888888776666655443 3444 555555666678899999999999999
Q ss_pred cCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccc
Q 047050 79 LERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 79 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
++...+..|..+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 9986667789999999999999999866553 344 889999999999999877778899999999999999999
Q ss_pred cCccccccCCCCCceeeccCcccccc
Q 047050 158 GGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 158 ~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+..+..+..+++|+.+++++|++++.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777899999999999999999876
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.3e-23 Score=163.80 Aligned_cols=179 Identities=16% Similarity=0.159 Sum_probs=145.6
Q ss_pred CeeeeeecCCccccCchhhhcc----------------------------------cCccEEEeeecccccccchhHhh-
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQ----------------------------------HQLQLLIISRNQIHGRISNWMWD- 45 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l----------------------------------~~L~~L~l~~n~i~~~~~~~~~~- 45 (186)
|+.++++.|.+.+..|..+..+ ++|+.|++++|.+.+..|..+..
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 4567777777776666655544 67888889888887766665533
Q ss_pred -----------------------------------------cceeee-eceeeeecCcccccCCCCCEEEccCCccCCcC
Q 047050 46 -----------------------------------------MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI 83 (186)
Q Consensus 46 -----------------------------------------l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 83 (186)
++.+.+ .|.+.+..|..+..+++|++|++++|.+++..
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 333333 56666777888899999999999999999877
Q ss_pred chhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccc
Q 047050 84 PTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPS 162 (186)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 162 (186)
+..|+.+++|+.|++++|.+.+..+ .+.. +++|++|++++|.+++..|.++..+++|+.|++++|.+++..+.
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcC------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 7889999999999999999876555 3333 88999999999999988889999999999999999999966666
Q ss_pred cccCCCCCceeeccCccccccCC
Q 047050 163 SLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
.++.+++|+.|++++|++++.+|
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhccCCcccEEEccCCCcccCCC
Confidence 78999999999999999999887
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.4e-22 Score=149.77 Aligned_cols=175 Identities=19% Similarity=0.185 Sum_probs=143.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhh---cceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+. .++ .++.+++|+.|++++|.+.+. ..+.. ++.+.+ +|.+.+..+..+.++++|++|++++
T Consensus 43 L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 43 IDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp CCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 456778888776 343 588999999999999999863 24444 455555 5666655566678999999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
|.+++..+..++.+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 999986666689999999999999999866553 344 8899999999999998777778899999999999999
Q ss_pred cccCccccccCCCCCceeeccCccccccCC
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+++..+..++.+++|+.|++++|++.+..|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 997777778999999999999999988776
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.1e-23 Score=172.37 Aligned_cols=176 Identities=17% Similarity=0.242 Sum_probs=138.1
Q ss_pred CeeeeeecCCcccc-----------------Cchhhh--cccCccEEEeeecccccccchhHhhccee---ee-ece-ee
Q 047050 1 MVINWIQLQPLDCE-----------------FPDVLK--TQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNN-FH 56 (186)
Q Consensus 1 l~~~~l~~~~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~-~~ 56 (186)
|+.|+++.|.+.+. +|+.++ ++++|+.|++++|.+.+.+|+.+.+++.| .+ .|. +.
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 57889999999986 999988 99999999999999999999888766555 44 554 77
Q ss_pred e-ecCcccccC------CCCCEEEccCCccCCcCch--hhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEec
Q 047050 57 G-RIPQTYVQG------CNLDFLRLNGNCLERPIPT--SLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDL 127 (186)
Q Consensus 57 ~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l 127 (186)
+ .+|..+.++ ++|++|++++|.++. +|. .++.+++|+.|++++|.+.+.+|.+.. +++|++|++
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~------l~~L~~L~L 360 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLPAFGS------EIKLASLNL 360 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECCCCEE------EEEESEEEC
T ss_pred cccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchhhhCC------CCCCCEEEC
Confidence 6 788888776 899999999999984 888 899999999999999999877775544 677777777
Q ss_pred cCCccCchhhHHhhccCC-CCEEEcCCCccccCccccccCCC--CCceeeccCccccccCC
Q 047050 128 SSNRFQEKILEVVGKLNS-LKNSNISHNNLIGGIPSSLRNLT--EFESLDLSLNKFVEHIP 185 (186)
Q Consensus 128 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~ip 185 (186)
++|.++ .+|.++..+++ |+.|++++|.++ .+|..++... +|+.|++++|.+++.+|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 777776 46666777777 777777777777 6676666544 67777777777766555
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=6.9e-24 Score=173.44 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=138.1
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeeccc------cc------ccc---------------------hhHhh---
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQI------HG------RIS---------------------NWMWD--- 45 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i------~~------~~~---------------------~~~~~--- 45 (186)
+.++++.+.+.|.+|++++++++|+.|++++|.+ .+ .+| ..+..
T Consensus 84 ~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~ 163 (636)
T 4eco_A 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163 (636)
T ss_dssp EEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHH
Confidence 5678899999999999999999999999999965 11 111 11110
Q ss_pred -------------------ccee---eeeceeeeecCcccccCCCCCEEEccCCccCCc-----------------Cchh
Q 047050 46 -------------------MGVR---TFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP-----------------IPTS 86 (186)
Q Consensus 46 -------------------l~~l---~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~ 86 (186)
++.+ .+.|.+.+ +|..+.++++|++|++++|.+++. +|..
T Consensus 164 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 0000 01456777 888889999999999999998875 7888
Q ss_pred hh--hcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCc-cCc-hhhHHhhcc------CCCCEEEcCCCc
Q 047050 87 LI--DYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNR-FQE-KILEVVGKL------NSLKNSNISHNN 155 (186)
Q Consensus 87 ~~--~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~ 155 (186)
++ .+++|++|++++|.+.+.+| .+.. +++|++|++++|. +++ .+|..++.+ ++|+.|++++|.
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKA------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTT------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhc------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 77 88999999999998888777 4444 7888889999987 887 788888776 888889998888
Q ss_pred cccCccc--cccCCCCCceeeccCccccccCC
Q 047050 156 LIGGIPS--SLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 156 ~~~~~~~--~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++ .+|. .++++++|+.|++++|.++|.+|
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 88 7888 78888888888888888888877
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.7e-22 Score=150.62 Aligned_cols=175 Identities=17% Similarity=0.083 Sum_probs=134.0
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
++.++++.|.+.+..|..|+.+++|+.|++++|.+++..+ ..+..++.+.+.++-...+|..+..+++|++|++++|++
T Consensus 33 l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l 112 (290)
T 1p9a_G 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112 (290)
T ss_dssp CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC
T ss_pred CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcC
Confidence 4567888888887777888888888888888888875433 334456666665555557777788888888888888888
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCcccc
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
+...+..|..+++|++|++++|.+.+..+. +.. +++|+.|++++|++++..+..+..+++|+.|++++|.++
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTP------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred cccCHHHHcCCCCCCEEECCCCCCCccChhhccc------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 875556788888888888888888765443 233 778888888888888766666777888888888888888
Q ss_pred CccccccCCCCCceeeccCccccc
Q 047050 159 GIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 159 ~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+|..+.....|+.+++++|++..
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCeEEeCCCCccC
Confidence 778888788888888888887753
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=7.7e-23 Score=153.31 Aligned_cols=181 Identities=16% Similarity=0.150 Sum_probs=86.7
Q ss_pred CeeeeeecCCcc--ccCchhhhcccCccEEEeeecccccccchhHh---hcceeee-eceeeeecC-cccccCCCCCEEE
Q 047050 1 MVINWIQLQPLD--CEFPDVLKTQHQLQLLIISRNQIHGRISNWMW---DMGVRTF-TNNFHGRIP-QTYVQGCNLDFLR 73 (186)
Q Consensus 1 l~~~~l~~~~l~--~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~l~~-~~~~~~~~~-~~~~~l~~L~~L~ 73 (186)
|+.++++.|.+. +..|..+..+++|+.|++++|.+.+ +|..+. .++.+.+ +|.+.+..+ ..+..+++|++|+
T Consensus 54 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 54 LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp CSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence 345666666655 2235555556666666666665543 232222 2333333 233332222 3455555555555
Q ss_pred ccCCccCCcCchhhhhcCCCCEEEecCccccc-CCC-CCCc------------------cchhhhcCcccEEeccCCccC
Q 047050 74 LNGNCLERPIPTSLIDYVNMNFLNVGNNKLSG-PIP-KCKN------------------IQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 74 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~-~~~~------------------~~~~~~~~~L~~l~l~~n~l~ 133 (186)
+++|.+....+..+..+++|+.|++++|.+.+ ..| .+.. ...+..+++|++|++++|.++
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 55555554444445555555555555555543 122 2222 000111445555555555555
Q ss_pred chhhHHhhccCCCCEEEcCCCccccCccccccCCC-CCceeeccCccccc
Q 047050 134 EKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLT-EFESLDLSLNKFVE 182 (186)
Q Consensus 134 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 182 (186)
+..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|++++
T Consensus 213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 44444444555555555555555544555555542 55555555555543
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.3e-22 Score=157.49 Aligned_cols=176 Identities=16% Similarity=0.140 Sum_probs=121.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcc---eeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMG---VRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~---~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+.+..|..|+++++|+.|++++|.+.+..++.+..+. .+.+ +|.+....+..+..+++|++|++++
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 45678888888877777888888888888888888776666665443 3444 4444444444566777777777777
Q ss_pred CccCCcCchhhhhcCCCCEEEec-------------------------CcccccCCCCCCccchhhhcCcccEEeccCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVG-------------------------NNKLSGPIPKCKNIQTERILTTSATIDLSSNR 131 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~-------------------------~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~ 131 (186)
|.++...+..|..+++|+.|+++ +|.+.+ +|.+. .+++|++|++++|.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~------~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLT------PLVGLEELEMSGNH 229 (452)
T ss_dssp CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCT------TCTTCCEEECTTSC
T ss_pred CCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccccc------ccccccEEECcCCc
Confidence 77765333344445555555554 444442 22222 26778888888888
Q ss_pred cCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 132 FQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 132 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 281 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence 8887788888888888888888888877777788888888888888888643
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=156.81 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=108.0
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
+.++++.|.+....+..|+++++|+.|++++|.+.+..+..+..+.. |.+ +|.+.+..+..+..+++|++|++++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 45666777776666666677777777777777666555555544333 333 33333333334556666666666666
Q ss_pred ccCCcCchhhhhcCCCCEEEe-------------------------cCcccccCCCCCCccchhhhcCcccEEeccCCcc
Q 047050 78 CLERPIPTSLIDYVNMNFLNV-------------------------GNNKLSGPIPKCKNIQTERILTTSATIDLSSNRF 132 (186)
Q Consensus 78 ~l~~~~~~~~~~l~~L~~L~l-------------------------~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l 132 (186)
.++...+..|..+++|+.|++ ++|.+. .+|.+. .+++|++|++++|.+
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~------~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT------PLIKLDELDLSGNHL 219 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCT------TCSSCCEEECTTSCC
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccC------CCcccCEEECCCCcc
Confidence 655433334444444444444 444443 122222 266777888888887
Q ss_pred CchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 133 QEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 133 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
++..+..+..+++|+.|++++|.+++..+..|.++++|+.|++++|++++.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 776677777777888888888877766677777777888888888777643
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.4e-22 Score=150.60 Aligned_cols=184 Identities=18% Similarity=0.201 Sum_probs=138.9
Q ss_pred CeeeeeecCCccccCch-hhhcccCccEEEeeecccccc--cchhHhh---cceeeeeceeeeecCcccccCCCCCEEEc
Q 047050 1 MVINWIQLQPLDCEFPD-VLKTQHQLQLLIISRNQIHGR--ISNWMWD---MGVRTFTNNFHGRIPQTYVQGCNLDFLRL 74 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~-~~~~l~~L~~L~l~~n~i~~~--~~~~~~~---l~~l~~~~~~~~~~~~~~~~l~~L~~L~l 74 (186)
++.++++.|.+. .+|+ .|+++++|+.|++++|.+... .+..+.. ++.+.+.++-...+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 467899999999 5554 579999999999999998743 3555544 45556655545568888999999999999
Q ss_pred cCCccCCcCc-hhhhhcCCCCEEEecCcccccCCCC-CCc-------------c------chhhhcCcccEEeccCCccC
Q 047050 75 NGNCLERPIP-TSLIDYVNMNFLNVGNNKLSGPIPK-CKN-------------I------QTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 75 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~-------------~------~~~~~~~~L~~l~l~~n~l~ 133 (186)
++|.++...+ ..+..+++|++|++++|.+.+..+. +.. . .....+++|++|++++|.++
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 9999987433 5788999999999999998866552 211 0 12334567788888888877
Q ss_pred chhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 134 EKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 134 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++.+|
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 7667777777888888888888876555567778888888888888876654
No 20
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=6e-22 Score=149.97 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=104.2
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eeee----------------------ceee
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTFT----------------------NNFH 56 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~~----------------------~~~~ 56 (186)
+.++++.|.+.+..+..|+++++|+.|++++|.+.+..|+.+..+.. +.+. |.+.
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEIT 134 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccc
Confidence 45566666666544455666666666666666666555555544332 2332 2222
Q ss_pred eecCcccccCCCCCEEEccCCccCC--cCchhhhhcCCCCEEEecCcccccCCCCCC----c------------cchhhh
Q 047050 57 GRIPQTYVQGCNLDFLRLNGNCLER--PIPTSLIDYVNMNFLNVGNNKLSGPIPKCK----N------------IQTERI 118 (186)
Q Consensus 57 ~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~------------~~~~~~ 118 (186)
+..+..+.++++|++|++++|.++. ..+..+..+++|+.|++++|.+........ . ...+..
T Consensus 135 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 214 (330)
T 1xku_A 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 214 (330)
T ss_dssp BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTT
T ss_pred ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcC
Confidence 2222334555566666666665532 344455566666666666665543211110 0 012334
Q ss_pred cCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 119 LTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 567777777777777666666777777777777777777 677777777777777777777763
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=4.6e-22 Score=147.13 Aligned_cols=179 Identities=20% Similarity=0.129 Sum_probs=110.3
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+.+..+..|+++++|+.|++++|.+.+..+..+..+ +.+.+ +|.+.+..+..+.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 3566777777775555577777777777777777766555555443 33344 4445555555666666677777766
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccC-CC-CCCccchhhhcCcccEEeccCCccCchhhHHhh-------------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGP-IP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVG------------- 141 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~------------- 141 (186)
|.+....+..++.+++|++|++++|.+.+. +| .+.. +++|++|++++|.+++..+..+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhcc------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 666654333566666666666666666542 23 2222 44555555555555443332222
Q ss_pred --------------ccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 142 --------------KLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 142 --------------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
...+|+.|++++|.+++..+..++++++|+.+++++|++.+..|
T Consensus 184 ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 23367778888888875555557888888888888888887655
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5.5e-22 Score=155.96 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=66.6
Q ss_pred chhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccc
Q 047050 84 PTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPS 162 (186)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 162 (186)
+..++.+++|+.|++++|.+.+..+ .+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|.
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFW------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTT------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhc------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 3334444555555555555544333 222 367888888888888777778888888888888888888876788
Q ss_pred cccCCCCCceeeccCcccccc
Q 047050 163 SLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~ 183 (186)
.++.+++|++|++++|++++.
T Consensus 366 ~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TTTTCTTCCEEECCSSCCSCC
T ss_pred hccccccccEEECCCCccccC
Confidence 888888888888888888753
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2e-22 Score=148.92 Aligned_cols=171 Identities=18% Similarity=0.139 Sum_probs=143.0
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhh---cceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.++++.|.+.+ + +.++.+++|+.|++++|.+++..+..+.. ++.+.+ .|.+.+..+..+..+++|++|++++
T Consensus 65 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 65 VRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp CCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC
Confidence 5788999999985 4 47899999999999999999877766555 455555 6666665666688999999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
|.+++..+..++.+++|+.|++++|++++..+. +.. +++|++|++++|.+++..+..+..+++|+.+++++|.
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC------CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 999986666688999999999999999866553 344 8899999999999999888888999999999999998
Q ss_pred cccCccccccCCCCCceeeccCccccccCCC
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip~ 186 (186)
+.+. ++.++.+++..|.++|.+|.
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccC
Confidence 8744 45688888999999998874
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=158.36 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=144.2
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+.+..|..|+++++|+.|++++|.+.+..|..+.++.. +.+ .|.+.+..+..+.++++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 467899999999888889999999999999999998887877766544 455 4455544445678899999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
|++....+..|..+++|+.|++++|.+.+..+ .+.. +++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccC------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 99998778889999999999999999886655 4444 7889999999999988777788888999999999988
Q ss_pred cccCccccccCCCCCceeeccCccccccCC
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+.+..+..+..+++|+.|++++|...+.+|
T Consensus 188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp CCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CcEeChhhcccCcccceeeCCCCccccccC
Confidence 886666677888888888877766555443
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=9.7e-23 Score=170.95 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=97.1
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEe-eecccccccchhHhh-----------------------------------
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLII-SRNQIHGRISNWMWD----------------------------------- 45 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l-~~n~i~~~~~~~~~~----------------------------------- 45 (186)
+.++++.+.+.|.+|++++++++|+.|++ ++|.+.|..+-....
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 45788888999999999999999999999 777665541110000
Q ss_pred -------------------cceee---eeceeeeecCcccccCCCCCEEEccCCccCC-----------------cCchh
Q 047050 46 -------------------MGVRT---FTNNFHGRIPQTYVQGCNLDFLRLNGNCLER-----------------PIPTS 86 (186)
Q Consensus 46 -------------------l~~l~---~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~ 86 (186)
++.+. ..|.+.+ +|..+.++++|++|++++|.+++ .+|..
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 00000 0244444 55566666666666666666655 25555
Q ss_pred hh--hcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCc-cCc-hhhHHhhccC-------CCCEEEcCCC
Q 047050 87 LI--DYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNR-FQE-KILEVVGKLN-------SLKNSNISHN 154 (186)
Q Consensus 87 ~~--~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n 154 (186)
++ .+++|++|++++|.+.+.+| .+.. +++|+.|++++|+ +++ .+|..++.++ +|+.|++++|
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYD------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGG------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhC------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 44 56666666666665555555 2222 4555555555554 544 4554444443 5555555555
Q ss_pred ccccCccc--cccCCCCCceeeccCcccc
Q 047050 155 NLIGGIPS--SLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 155 ~~~~~~~~--~~~~l~~L~~L~l~~n~l~ 181 (186)
.++ .+|. .++++++|+.|++++|.++
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 555 4554 4555555555555555554
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=2.2e-22 Score=168.83 Aligned_cols=175 Identities=18% Similarity=0.270 Sum_probs=147.9
Q ss_pred CeeeeeecCCcccc-----------------Cchhhh--cccCccEEEeeecccccccchhHhhccee---ee-ece-ee
Q 047050 1 MVINWIQLQPLDCE-----------------FPDVLK--TQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNN-FH 56 (186)
Q Consensus 1 l~~~~l~~~~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~-~~ 56 (186)
|+.|+++.|.+.++ +|+.++ ++++|+.|++++|.+.+.+|..+..++.| .+ .|. +.
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 57889999999983 999987 99999999999999999999888877655 44 554 77
Q ss_pred e-ecCcccccCC-------CCCEEEccCCccCCcCch--hhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEe
Q 047050 57 G-RIPQTYVQGC-------NLDFLRLNGNCLERPIPT--SLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATID 126 (186)
Q Consensus 57 ~-~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~ 126 (186)
+ .+|..+.+++ +|++|++++|.++ .+|. .++.+++|+.|++++|.+. .+|.+.. +++|+.|+
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~------L~~L~~L~ 601 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGT------NVKLTDLK 601 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCT------TSEESEEE
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcC------CCcceEEE
Confidence 6 7887766655 9999999999999 4888 8999999999999999998 6665555 88999999
Q ss_pred ccCCccCchhhHHhhccCC-CCEEEcCCCccccCccccccCCCC--CceeeccCccccccCC
Q 047050 127 LSSNRFQEKILEVVGKLNS-LKNSNISHNNLIGGIPSSLRNLTE--FESLDLSLNKFVEHIP 185 (186)
Q Consensus 127 l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~ip 185 (186)
+++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|.+.|.+|
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence 9999998 57888888988 999999999998 78888777654 8899999998887765
No 27
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.7e-22 Score=152.07 Aligned_cols=175 Identities=18% Similarity=0.180 Sum_probs=93.1
Q ss_pred CeeeeeecCCccccCchhh--hcccCccEEEeeecccccccchhHhh--------cceeee-eceeeeecCcccccCCCC
Q 047050 1 MVINWIQLQPLDCEFPDVL--KTQHQLQLLIISRNQIHGRISNWMWD--------MGVRTF-TNNFHGRIPQTYVQGCNL 69 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~--------l~~l~~-~~~~~~~~~~~~~~l~~L 69 (186)
|+.++++.|.+.+.+|..+ +.+++|+.|++++|.+++. |..+.. ++.+.+ +|.+.+..|..+.++++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4566777777777777665 6777777777777777665 544433 344444 444444444666666777
Q ss_pred CEEEccCCccCCc--Cchhh--hhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhh-HHhhccC
Q 047050 70 DFLRLNGNCLERP--IPTSL--IDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKIL-EVVGKLN 144 (186)
Q Consensus 70 ~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~l~ 144 (186)
++|++++|++.+. .+..+ +.+++|++|++++|++++... .. ......+++|++|++++|.+++..| ..+..++
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG-VC-SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HH-HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH-HH-HHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 7777777765432 12233 556666666666666542100 00 0011123455555555555544332 2233345
Q ss_pred CCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 145 SLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 145 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+|+.|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 254 ~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 254 QLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp TCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred CCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 5555555555554 4444443 44555555555554
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=9.6e-22 Score=154.83 Aligned_cols=174 Identities=14% Similarity=0.074 Sum_probs=136.0
Q ss_pred ecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 7 QLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 7 ~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
....+. .+|..+. ++++.|++++|.+++..++.+..+..| .+ +|.+.+..+..+.++++|++|++++|.++..
T Consensus 62 ~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 62 TRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC
T ss_pred CCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc
Confidence 344555 6776553 689999999999998888877665554 55 6777777778899999999999999999986
Q ss_pred CchhhhhcCCCCEEEecCcccccCCC-CCCc-------------------cchhhhcCcccEEeccCCccCchhhHHhhc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKN-------------------IQTERILTTSATIDLSSNRFQEKILEVVGK 142 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~-------------------~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 142 (186)
.+..|..+++|++|++++|.+....+ .+.. ...+..+++|++|++++|.+++. | .+..
T Consensus 139 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~ 216 (452)
T 3zyi_A 139 PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP 216 (452)
T ss_dssp CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT
T ss_pred ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc
Confidence 56668899999999999999875443 1211 01234577888888888888763 3 4667
Q ss_pred cCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 143 LNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 143 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+++|+.|++++|.+++..|..|.++++|+.|++++|.+++..|
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 8889999999999987778889999999999999998876544
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=6.2e-22 Score=160.79 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=91.4
Q ss_pred CeeeeeecCCcccc--CchhhhcccCccEEEeeecccccccchhHhh---cceeee-eceeeeecC-cccccCCCCCEEE
Q 047050 1 MVINWIQLQPLDCE--FPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTF-TNNFHGRIP-QTYVQGCNLDFLR 73 (186)
Q Consensus 1 l~~~~l~~~~l~~~--~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~-~~~~~~~~~-~~~~~l~~L~~L~ 73 (186)
|+.++++.|.+.+. +|..+..+++|+.|++++|.+.+ +|..+.. ++.+.+ +|.+.+..| ..+..+++|++|+
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 430 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD 430 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEE
Confidence 34566666666544 35666666666666666666543 2233332 233333 334443333 3455555555555
Q ss_pred ccCCccCCcCchhhhhcCCCCEEEecCcccccC-CC-CCCc------------------cchhhhcCcccEEeccCCccC
Q 047050 74 LNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGP-IP-KCKN------------------IQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 74 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~-~~~~------------------~~~~~~~~~L~~l~l~~n~l~ 133 (186)
+++|.+.+..|..++.+++|++|++++|.+.+. .| .+.. ...+..+++|++|++++|.++
T Consensus 431 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC
Confidence 555555554455555555555555555555441 22 2222 000111455555555555555
Q ss_pred chhhHHhhccCCCCEEEcCCCccccCccccccCCC-CCceeeccCcccccc
Q 047050 134 EKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLT-EFESLDLSLNKFVEH 183 (186)
Q Consensus 134 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 183 (186)
+..|..+..+++|+.|++++|.++ .+|..+..++ +|+.+++++|++.+.
T Consensus 511 ~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 511 FLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 555555555555555555555555 4454455554 355555555555443
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.6e-22 Score=161.02 Aligned_cols=179 Identities=18% Similarity=0.145 Sum_probs=136.3
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccc--cchhHhhcce---eeeeceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGR--ISNWMWDMGV---RTFTNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~---l~~~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
|+.++++.|...+.+ .+..+++|+.|++++|.+.+. .+..+..+.. +.+.++....+|..+..+++|++|+++
T Consensus 330 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 567889999766555 567999999999999999876 3677666544 455444445577889999999999999
Q ss_pred CCccCCcCc-hhhhhcCCCCEEEecCcccccCCCC-CCc-------------c------chhhhcCcccEEeccCCccCc
Q 047050 76 GNCLERPIP-TSLIDYVNMNFLNVGNNKLSGPIPK-CKN-------------I------QTERILTTSATIDLSSNRFQE 134 (186)
Q Consensus 76 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~-~~~-------------~------~~~~~~~~L~~l~l~~n~l~~ 134 (186)
+|++.+..+ ..+..+++|+.|++++|.+.+..|. +.. . ..+..+++|++|++++|.+++
T Consensus 408 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp TSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 999998666 5789999999999999999876662 222 0 113445677777777777777
Q ss_pred hhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 135 KILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 135 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
..|.++..+++|+.|++++|.+++..|..++++++|+.|++++|+++
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 66777777777777777777777666777777777888888877776
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.4e-21 Score=158.73 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=66.2
Q ss_pred cccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccC-CCCCCccchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 63 YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGP-IPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
+..+++|++|++++|.+....+..++.+++|+.|++++|.+.+. ++. ......+++|++|++++|.+++..|..+.
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 497 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK---TNSLQTLGRLEILVLSFCDLSSIDQHAFT 497 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS---SCGGGGCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc---chhhccCCCccEEECCCCccCccChhhhc
Confidence 44444555555555554443444444455555555555554431 110 01122356666666666666665566666
Q ss_pred ccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 142 KLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 142 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
.+++|+.|++++|.+++..|..+++++.| .|++++|++++.+|
T Consensus 498 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred cccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 66667777777776666666666666666 66666666665443
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.7e-21 Score=142.66 Aligned_cols=173 Identities=21% Similarity=0.197 Sum_probs=140.7
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
+.++++.+.+. .+|..+. ++++.|++++|.+.+..+..+..+ +.+.+ +|.+....+..+.++++|++|++++|
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 35677778888 6887654 689999999999987766666554 55555 45555434445688999999999999
Q ss_pred ccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCcc
Q 047050 78 CLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNL 156 (186)
Q Consensus 78 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 156 (186)
.++...+..|..+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 99985566788999999999999999876653 344 89999999999999987777788999999999999999
Q ss_pred ccCccccccCCCCCceeeccCcccccc
Q 047050 157 IGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 157 ~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
++..+..+.++++|+.|++++|.+++.
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcC
Confidence 976666799999999999999999753
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-21 Score=158.61 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=118.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcc---eeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMG---VRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~---~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
|+.+++++|.+.+..|..|+.+++|+.|++++|.+.+..|..+..+. .|.+ +|.+.+..+..+.++++|++|++++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 46778888888877777888888888888888888877776655544 4455 4444433334457888888888888
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC----CCC-----------------------------------------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP----KCK----------------------------------------- 111 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~----------------------------------------- 111 (186)
|.+++..|..|+.+++|++|++++|.+.+... .+.
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~ 236 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 236 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCE
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCE
Confidence 88887666678888888888888887764321 000
Q ss_pred ---------ccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 112 ---------NIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 112 ---------~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.......+++|+.|++++|.+++..|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++
T Consensus 237 L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 237 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC
Confidence 0011233456666666666666655666666666666666666665 34555555566666666666654
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.8e-21 Score=147.52 Aligned_cols=179 Identities=18% Similarity=0.194 Sum_probs=117.2
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeeeeceeeeecCcccccCCCCCEEEccCC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTFTNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
++.++++.|.+.+..|..|+++++|+.|++++|.+++..|+.+..+ +.+.+.++....+|..+. ++|++|++++|
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n 133 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN 133 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCC
Confidence 4567777777776666677888888888888888777666666544 334443333334555443 56667777777
Q ss_pred ccCCcCchhhhhcCCCCEEEecCccccc--CCC-CCCc--------------------------------------cchh
Q 047050 78 CLERPIPTSLIDYVNMNFLNVGNNKLSG--PIP-KCKN--------------------------------------IQTE 116 (186)
Q Consensus 78 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~-~~~~--------------------------------------~~~~ 116 (186)
.++...+..+..+++|+.|++++|.+.. ..+ .+.. ...+
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSS
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHh
Confidence 6665444456666666666666666532 111 0000 0123
Q ss_pred hhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 117 RILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 117 ~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
..+++|++|++++|.+++..+.++..+++|+.|++++|.++ .+|..++.+++|+.|++++|++++
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 34667778888888887766667777888888888888887 677778888888888888888764
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=3.3e-21 Score=143.71 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=142.2
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.+.+. .+|..+. ++++.|++++|.+++..+..+..+..+ .+ .|.+. .++.. ..+++|++|++++
T Consensus 12 l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC-SCCTTCCEEECCS
T ss_pred ccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC-CCCCcCCEEECCC
Confidence 356788888888 7887664 799999999999998877777665544 55 44444 34433 7889999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
|.++. +|..+..+++|++|++++|++++..+ .+.. +++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 87 N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 87 NQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp SCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcC------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99996 78888999999999999999987665 3444 8999999999999998777888899999999999999
Q ss_pred cccCccccccCCCCCceeeccCccccccCC
Q 047050 156 LIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 156 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++...+..+..+++|+.|++++|+++ .+|
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 99555556788999999999999997 555
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=157.33 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=132.9
Q ss_pred CeeeeeecCCccccC--chhhhcccCccEEEeeecccccccchhHh---hcceeee-eceeeeecC-cccccCCCCCEEE
Q 047050 1 MVINWIQLQPLDCEF--PDVLKTQHQLQLLIISRNQIHGRISNWMW---DMGVRTF-TNNFHGRIP-QTYVQGCNLDFLR 73 (186)
Q Consensus 1 l~~~~l~~~~l~~~~--p~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~l~~-~~~~~~~~~-~~~~~l~~L~~L~ 73 (186)
|+.++++.|.+.+.. |..+..+++|+.|++++|.+.+..+. +. .++.+.+ +|.+.+..+ ..+..+++|++|+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 345666666665443 56667777777777777776654333 33 3344444 445554444 4567778888888
Q ss_pred ccCCccCCcCchhhhhcCCCCEEEecCcccc-cCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEc
Q 047050 74 LNGNCLERPIPTSLIDYVNMNFLNVGNNKLS-GPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNI 151 (186)
Q Consensus 74 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 151 (186)
+++|.+....+..+..+++|+.|++++|.+. +..| .+.. +++|++|++++|.+++..|.++..+++|+.|++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc------ccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 8888887767777788888888888888876 3444 3334 789999999999999887889999999999999
Q ss_pred CCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 152 SHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 152 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|.+++..+..+.++++|+.+++++|++++.+|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999997777789999999999999999999877
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=4.5e-22 Score=149.76 Aligned_cols=179 Identities=14% Similarity=0.141 Sum_probs=136.3
Q ss_pred eeeeeecCCc-cccCchhhh-------cccCccEEEeeecccccccchhH--h---hcceeee-eceeeeecCcccccC-
Q 047050 2 VINWIQLQPL-DCEFPDVLK-------TQHQLQLLIISRNQIHGRISNWM--W---DMGVRTF-TNNFHGRIPQTYVQG- 66 (186)
Q Consensus 2 ~~~~l~~~~l-~~~~p~~~~-------~l~~L~~L~l~~n~i~~~~~~~~--~---~l~~l~~-~~~~~~~~~~~~~~l- 66 (186)
+.++++.|.+ .+.+|..+. ++++|+.|++++|.+.+.+|..+ . .++.+.+ +|.+.+. |..+..+
T Consensus 66 ~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~ 144 (312)
T 1wwl_A 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ 144 (312)
T ss_dssp HHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH
T ss_pred hhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH
Confidence 4567778887 567887776 78999999999999988777654 3 4455566 4445444 7777766
Q ss_pred ----CCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCC--C-CCCccchhhhcCcccEEeccCCccCch--h-
Q 047050 67 ----CNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPI--P-KCKNIQTERILTTSATIDLSSNRFQEK--I- 136 (186)
Q Consensus 67 ----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~~~~~~~L~~l~l~~n~l~~~--~- 136 (186)
++|++|++++|++++..+..++.+++|++|++++|++.+.. + .. ....+++|++|++++|.+++. .
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL----CPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS----CTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH----HhccCCCCCEEECCCCcCcchHHHH
Confidence 88999999999998866688899999999999999875431 1 11 012278999999999999842 2
Q ss_pred hHHhhccCCCCEEEcCCCccccCcc-ccccCCCCCceeeccCccccccCCC
Q 047050 137 LEVVGKLNSLKNSNISHNNLIGGIP-SSLRNLTEFESLDLSLNKFVEHIPT 186 (186)
Q Consensus 137 ~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ip~ 186 (186)
...+..+++|+.|++++|.+++..| ..+..+++|+.|++++|.++ .+|.
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 2445577999999999999997664 45667889999999999997 7763
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.5e-21 Score=158.52 Aligned_cols=178 Identities=19% Similarity=0.171 Sum_probs=146.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchh-Hhh---cceeee-eceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNW-MWD---MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~---l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
|+.++++.|.+.+..|..++.+++|+.|++++|.+.+..+.. +.. ++.+.+ +|.+.+..|..+..+++|++|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 456777888887777788888888888888888887655432 443 444555 566666678888999999999999
Q ss_pred CCccCCc---CchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEc
Q 047050 76 GNCLERP---IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNI 151 (186)
Q Consensus 76 ~n~l~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 151 (186)
+|.+.+. .+..+..+++|+.|++++|.+.+..| .+.. +++|++|++++|++++..|..+..++.| .+++
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc------ccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 9998752 33568899999999999999997766 4444 8999999999999999999999999999 9999
Q ss_pred CCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 152 SHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 152 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|.+++..|..++.+++|+.+++++|++.++.+
T Consensus 531 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999998888889999999999999999987543
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=4.1e-21 Score=148.46 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=107.3
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeeeeceeeeecCcc-cccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTFTNNFHGRIPQT-YVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~ 76 (186)
|+.++++.|.+.+..|..|+.+++|+.|++++|.+.+..|+.+..+ +.+.+.++-...+|.. +.++++|++|++++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC
Confidence 4567777777776666677777777777777777776666655444 3444433333344444 46777777888877
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC----CCC-----------------------------------------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP----KCK----------------------------------------- 111 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~----------------------------------------- 111 (186)
|.++...+..++.+++|+.|++++|.+.+... ...
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 230 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI 230 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCE
T ss_pred CccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccE
Confidence 77776555667777777777777777653211 000
Q ss_pred ---------ccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 112 ---------NIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 112 ---------~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.......+++|++|++++|.+++..|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 231 L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~ 308 (390)
T 3o6n_A 231 LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308 (390)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce
Confidence 0011223455566666666665555555555666666666666555 34444455555666666666554
No 40
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.8e-21 Score=140.11 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=140.7
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecc-cccccchhHh---hcceeeee--ceeeeecCcccccCCCCCEEEc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQ-IHGRISNWMW---DMGVRTFT--NNFHGRIPQTYVQGCNLDFLRL 74 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~-i~~~~~~~~~---~l~~l~~~--~~~~~~~~~~~~~l~~L~~L~l 74 (186)
++.++++.|.+.+..+..|+.+++|+.|++++|. +++..+..+. .++.+.+. |.+.+..+..+.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 4678999999996666789999999999999997 8766555554 45556664 6676666678899999999999
Q ss_pred cCCccCCcCchhhhhcCCCC---EEEecCc-ccccCCC-CCCccchhhhcCccc-EEeccCCccCchhhHHhhccCCCCE
Q 047050 75 NGNCLERPIPTSLIDYVNMN---FLNVGNN-KLSGPIP-KCKNIQTERILTTSA-TIDLSSNRFQEKILEVVGKLNSLKN 148 (186)
Q Consensus 75 ~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~-~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~l~~L~~ 148 (186)
++|.+++ +|. +..+++|+ +|++++| .+.+..+ .+.. +++|+ ++++++|.++...+..+.. ++|+.
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------TBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------hhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 9999998 666 88888888 9999999 8876554 2444 88999 9999999998644444444 88999
Q ss_pred EEcCCCc-cccCccccccCC-CCCceeeccCccccccCC
Q 047050 149 SNISHNN-LIGGIPSSLRNL-TEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 149 L~l~~n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~ip 185 (186)
+++++|. ++...+..|..+ ++|+.|++++|+++ .+|
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~ 221 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP 221 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCC
Confidence 9999995 885556778999 99999999999997 444
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=150.45 Aligned_cols=174 Identities=19% Similarity=0.138 Sum_probs=132.0
Q ss_pred eecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccCCccCC
Q 047050 6 IQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLER 81 (186)
Q Consensus 6 l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 81 (186)
...+.+. ++|..+. ++++.|++++|.+.+..++.+..+..| .+ +|.+.+..+..|.++++|++|++++|+++.
T Consensus 50 c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 50 CVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp CCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS
T ss_pred eCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe
Confidence 3444555 7777654 789999999999998877777766554 45 666776677889999999999999999998
Q ss_pred cCchhhhhcCCCCEEEecCcccccCCC-CCCc-------------------cchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 82 PIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKN-------------------IQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~-------------------~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
..+..|..+++|+.|++++|.+....+ .+.. ...+..+++|++|++++|.++. +| .+.
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~ 204 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLT 204 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCT
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccC
Confidence 555679999999999999999875443 2211 0123456778888888888765 33 366
Q ss_pred ccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccC
Q 047050 142 KLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 142 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i 184 (186)
.+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 7788888888888888767778888888888888888887543
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=149.59 Aligned_cols=183 Identities=15% Similarity=0.227 Sum_probs=106.8
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhh---cceeeeeceeeeecCc--ccccCCCCCEEEccC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTFTNNFHGRIPQ--TYVQGCNLDFLRLNG 76 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~ 76 (186)
+.++++.|.+.+..|..|+++++|+.|++++|.+++..++.+.. ++.+.+.++-...+|. .+.++++|++|++++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~ 158 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCC
Confidence 44555555555544555555566666666666555433333333 2333333222223333 455566666666666
Q ss_pred C-ccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCcc------------------chhhhcCcccEEeccCCccCc--
Q 047050 77 N-CLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNI------------------QTERILTTSATIDLSSNRFQE-- 134 (186)
Q Consensus 77 n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~------------------~~~~~~~~L~~l~l~~n~l~~-- 134 (186)
| .++...+..++.+++|+.|++++|.+.+..| .+... .....+++|+++++++|.+++
T Consensus 159 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred CccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 5 3444334455566666666666666554433 12110 011235667777777777764
Q ss_pred -----------------------------hhhHHhhccCCCCEEEcCCCccccCcccc-ccCCCCCceeeccCccccccC
Q 047050 135 -----------------------------KILEVVGKLNSLKNSNISHNNLIGGIPSS-LRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 135 -----------------------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~i 184 (186)
.+|.++..+++|+.|++++|.++ .+|.. ++++++|+.|++++|++.++.
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 24566777888888999888888 56665 578888999999999888765
Q ss_pred C
Q 047050 185 P 185 (186)
Q Consensus 185 p 185 (186)
|
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 4
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=137.29 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=118.7
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecC-cccccCCCCCEEEccCCccCC
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIP-QTYVQGCNLDFLRLNGNCLER 81 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~ 81 (186)
.++++.|.+. .+|..+. +.++.|++++|.+++ ..+ ..+..+++|++|++++|+++.
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~--------------------~~~~~~~~~l~~L~~L~L~~N~i~~ 71 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTV--------------------LEATGIFKKLPQLRKINFSNNKITD 71 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCE--------------------ECCCCCGGGCTTCCEEECCSSCCCE
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCc--------------------cCchhhhccCCCCCEEECCCCcCCE
Confidence 3556666666 5665442 345677777777763 222 346788899999999999988
Q ss_pred cCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCc
Q 047050 82 PIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGI 160 (186)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 160 (186)
..+..|..+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..|..+..+++|+.|++++|.+++..
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKG------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred ECHHHhCCCCCCCEEECCCCccCccCHhHhcC------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 6566788899999999999998765552 334 788999999999998877888888899999999999998777
Q ss_pred cccccCCCCCceeeccCccccccC
Q 047050 161 PSSLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 161 ~~~~~~l~~L~~L~l~~n~l~~~i 184 (186)
|..|..+++|+.|++++|++.++.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCC
Confidence 888899999999999999887653
No 44
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=9.6e-21 Score=135.85 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=121.4
Q ss_pred eeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcC
Q 047050 4 NWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI 83 (186)
Q Consensus 4 ~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 83 (186)
++.+.+.+. ++|..+. ++++.|++++|.+.+ ..+..+..+++|++|++++|+++...
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~--------------------i~~~~~~~l~~L~~L~Ls~N~i~~~~ 72 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKV--------------------IPPGAFSPYKKLRRIDLSNNQISELA 72 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCE--------------------ECTTSSTTCTTCCEEECCSSCCCEEC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCC--------------------cCHhHhhCCCCCCEEECCCCcCCCcC
Confidence 445556666 6676553 678888888888863 33446778889999999999998867
Q ss_pred chhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccc
Q 047050 84 PTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPS 162 (186)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 162 (186)
|..|..+++|++|++++|.++...+. +.+ +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEG------LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccC------CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 88899999999999999998855443 334 78999999999999988888898999999999999999976677
Q ss_pred cccCCCCCceeeccCccccc
Q 047050 163 SLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+..+++|+.+++++|++..
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred HHhCCCCCCEEEeCCCCcCC
Confidence 78889999999999998754
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8e-21 Score=143.94 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=126.7
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
+.++++.+.+. .+|..+ .++++.|++++|.+.+..++.+..+.. +.+ +|.+.+..|..+.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 45677778887 788766 379999999999998877777766544 455 67777777889999999999999999
Q ss_pred ccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCcc---c-----------------hhhhc-----------------
Q 047050 78 CLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNI---Q-----------------TERIL----------------- 119 (186)
Q Consensus 78 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~---~-----------------~~~~~----------------- 119 (186)
.++. +|..+. ++|++|++++|.+.+..+. +... + ....+
T Consensus 113 ~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 113 HLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCS
T ss_pred cCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCc
Confidence 9996 676654 7999999999999865442 2220 0 00000
Q ss_pred ---CcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 120 ---TTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 120 ---~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..++.+++|+.|++++|.++ .+|
T Consensus 190 ~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 190 DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 24555555555555555566667777777777777777655666777777888888877776 555
No 46
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.4e-21 Score=136.31 Aligned_cols=164 Identities=16% Similarity=0.112 Sum_probs=83.5
Q ss_pred eecCCccccCchhhhcccCccEEEeeecccccccchhHhh---cceeee-eceeeeecCcccccCCCCCEEEccCCccCC
Q 047050 6 IQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWD---MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLER 81 (186)
Q Consensus 6 l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 81 (186)
.+.+.+. .+|..+ .++|+.|++++|.+++..++.+.. ++.+.+ +|.+.+..+..+..+++|++|++++|.++.
T Consensus 14 c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 3444444 555443 357777888887776433332222 222222 222222222334555566666666666555
Q ss_pred cCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCc
Q 047050 82 PIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGI 160 (186)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 160 (186)
..+..+..+++|++|++++|.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.+++++|.+.+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDK------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhcc------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 3333455556666666666655543332 222 4556666666666555444445555566666666655442
Q ss_pred cccccCCCCCceeeccCccccccCC
Q 047050 161 PSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 161 ~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
.++.++.|+++.|.++|.+|
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBB
T ss_pred -----CCCCHHHHHHHHHhCCceee
Confidence 23345555555555555555
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.6e-20 Score=137.15 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=131.6
Q ss_pred cCccEEEeeecccccccchhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCc
Q 047050 23 HQLQLLIISRNQIHGRISNWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNN 101 (186)
Q Consensus 23 ~~L~~L~l~~n~i~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 101 (186)
...+.++.+++.++.........++.+.+ +|.+.+..+..+.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 46788999999887543333456788888 66666666778999999999999999999877777899999999999999
Q ss_pred ccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccc
Q 047050 102 KLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 102 ~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 180 (186)
.+.+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..++.+++|++|++++|.+
T Consensus 94 ~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 94 QLASLPLGVFDH------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CCCCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cccccChhHhcc------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99866553 334 89999999999999987777788999999999999999966666899999999999999999
Q ss_pred cccCC
Q 047050 181 VEHIP 185 (186)
Q Consensus 181 ~~~ip 185 (186)
++..|
T Consensus 168 ~~~~~ 172 (251)
T 3m19_A 168 QSVPH 172 (251)
T ss_dssp SCCCT
T ss_pred CccCH
Confidence 85543
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=149.04 Aligned_cols=92 Identities=26% Similarity=0.309 Sum_probs=61.7
Q ss_pred hhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCc--hhhHHhhccCCCCEEEcCCCccccCcccc-
Q 047050 88 IDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQE--KILEVVGKLNSLKNSNISHNNLIGGIPSS- 163 (186)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 163 (186)
..+++|++|++++|++.+..| .+.. +++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+|..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGH------LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCC------CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhhhcc------CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 345666677777776665444 3333 6777888888887775 45567777788888888888777545553
Q ss_pred ccCCCCCceeeccCccccccCC
Q 047050 164 LRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 164 ~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+..+++|+.|++++|.+++.+|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG
T ss_pred hccCccCCEEECcCCCCCcchh
Confidence 6666777777777777765543
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=149.14 Aligned_cols=177 Identities=16% Similarity=0.084 Sum_probs=125.1
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCC---------
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGC--------- 67 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~--------- 67 (186)
|+.++++.|.+.+..|..|+.+++|+.|++++|.+++..+..+..+.. +.+ .|.+.+..+..+..++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 466778888887777777888888888888888877655555554433 333 3333333333344444
Q ss_pred ---------------CCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCc
Q 047050 68 ---------------NLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNR 131 (186)
Q Consensus 68 ---------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~ 131 (186)
+|++|++++|.++...+..+..+++|+.|++++|.+.+..+ .+.. +++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~ 283 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------LLRLQEIQLVGGQ 283 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT------CTTCCEEECCSSC
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc------cccCCEEECCCCc
Confidence 56666666666665333567777888888888887775544 2333 7888889999998
Q ss_pred cCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 132 FQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 132 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++.++
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8887788888888999999999988866666778888899999998887654
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.3e-20 Score=154.86 Aligned_cols=184 Identities=21% Similarity=0.182 Sum_probs=120.1
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcc---eeee-eceeee------------------
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMG---VRTF-TNNFHG------------------ 57 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~---~l~~-~~~~~~------------------ 57 (186)
|+.++++.|.+.+..|..++.+++|+.|++++|.+.+.++ ..+..+. .+.+ +|.+.+
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 3566777777877777777788888888888887766554 3444333 3333 333332
Q ss_pred --------ecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCC-C--ccchhhhcCcccEEe
Q 047050 58 --------RIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKC-K--NIQTERILTTSATID 126 (186)
Q Consensus 58 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~~~~~~~~L~~l~ 126 (186)
..|..+.++++|++|++++|+++...+..+..+++|+.|++++|.+.+..+.. . ....+..+++|++++
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 34555666677777777777777644455677777777777777766432110 0 001133467788888
Q ss_pred ccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccC
Q 047050 127 LSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 127 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~i 184 (186)
+++|.++...+..|..+++|+.+++++|.+++..+..|..+++|+.|++++|.+++..
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 8888887654556777888888888888888555555777888888888888877544
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=3.3e-20 Score=152.49 Aligned_cols=161 Identities=19% Similarity=0.156 Sum_probs=131.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhccee---ee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+.+..+..|+++++|+.|++++|.+.+..|+.+..+..| .+ +|.+.+..+..+.++++|++|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 4678999999997777789999999999999999998888888766554 55 4555543444689999999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhh--ccCCCCEEEcCC
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVG--KLNSLKNSNISH 153 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~--~l~~L~~L~l~~ 153 (186)
|.++...+..|+.+++|++|++++|.+.+..+ .+.. +++|++|++++|.+++..+..+. .+++|+.|++++
T Consensus 107 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ------LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSC------CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CccCccChhHccccCCCCEEECCCCcccccCchhhcc------cccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99998666789999999999999999987666 3444 88999999999999887777665 347899999999
Q ss_pred CccccCccccccCC
Q 047050 154 NNLIGGIPSSLRNL 167 (186)
Q Consensus 154 n~~~~~~~~~~~~l 167 (186)
|.+++..|..++.+
T Consensus 181 n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 181 NQIKEFSPGCFHAI 194 (680)
T ss_dssp CCCCCBCTTGGGGS
T ss_pred CcccccChhhhhhh
Confidence 99987777666554
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=151.21 Aligned_cols=179 Identities=19% Similarity=0.184 Sum_probs=114.5
Q ss_pred CeeeeeecCCccccCchhh-----hcccCccEEEeeecccccccc-----------------------------hhHhhc
Q 047050 1 MVINWIQLQPLDCEFPDVL-----KTQHQLQLLIISRNQIHGRIS-----------------------------NWMWDM 46 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~-----~~l~~L~~L~l~~n~i~~~~~-----------------------------~~~~~l 46 (186)
|+.++++.|.+.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 4567777788877788777 6666666666666665 233 222333
Q ss_pred ceeee-eceeeeecCcccccCCCCCEEEccCCccCC--cCchhhhhcCCCCEEEecCcccccCCC-C-CCcc--------
Q 047050 47 GVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLER--PIPTSLIDYVNMNFLNVGNNKLSGPIP-K-CKNI-------- 113 (186)
Q Consensus 47 ~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~-~~~~-------- 113 (186)
+.+.+ +|.+.+..|..+.++++|++|++++|++++ .+|..++.+++|++|++++|.+.+.+| . +...
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 44444 555666677777888888888888888875 344667788888888888888876333 1 2220
Q ss_pred -------chhhhc-CcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccc-ccCCCCCceeeccCcccccc
Q 047050 114 -------QTERIL-TTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSS-LRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 114 -------~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 183 (186)
.....+ ++|+.|++++|.++. +|.++..+++|+.|++++|.++ .+|.. +..+++|+.+++++|+++++
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCCCCcchhhhhcccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 000111 466667777776663 5555556777777777777776 45554 66677777777777777654
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=158.98 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=144.3
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeeccccccc-chhHhhccee---ee-eceeeeecCcccccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRI-SNWMWDMGVR---TF-TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~l---~~-~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
++.|++++|.+.+..|..|+++++|+.|++++|...+.+ |+.+.++..| .+ +|.+.+..|..+.++++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 467899999999888899999999999999999655555 6666655444 44 677777778889999999999999
Q ss_pred CCccCCcCchh--hhhcCCCCEEEecCcccccCCC--CCCccchhhhcCcccEEeccCCccCchhhHHhhcc--CCCCEE
Q 047050 76 GNCLERPIPTS--LIDYVNMNFLNVGNNKLSGPIP--KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKL--NSLKNS 149 (186)
Q Consensus 76 ~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l--~~L~~L 149 (186)
+|.+.+..+.. ++.+++|++|++++|.+.+..+ .+.. +++|++|++++|.+++..+..+..+ ++|+.+
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~------L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK------LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT------CSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh------CCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 99988755655 8889999999999998876543 2333 8899999999999988777777777 889999
Q ss_pred EcCCCccccCccccccCCCC------CceeeccCccccccCC
Q 047050 150 NISHNNLIGGIPSSLRNLTE------FESLDLSLNKFVEHIP 185 (186)
Q Consensus 150 ~l~~n~~~~~~~~~~~~l~~------L~~L~l~~n~l~~~ip 185 (186)
+++.|.+.+..|..++.+.. |+.|++++|.+++.+|
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 99999998877777776655 8999999998877665
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=149.39 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=119.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeeecCcc-cccCCCCCEEEcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQT-YVQGCNLDFLRLN 75 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~-~~~l~~L~~L~l~ 75 (186)
++.++++.|.+.+..+..++++++|+.|++++|.+++..++.+..+ +.+.+ +|.+. .++.. +.++++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECC
Confidence 4567778888775555577888888888888888876666655544 44444 34444 34443 6777778888888
Q ss_pred CCccCCcCch--hhhhcCCCCEEEecCcc-cccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEc
Q 047050 76 GNCLERPIPT--SLIDYVNMNFLNVGNNK-LSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNI 151 (186)
Q Consensus 76 ~n~l~~~~~~--~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l 151 (186)
+|.++. ++. .+..+++|++|++++|. +....+ .+.+ +++|+++++++|.+++..|..+..+++|+.|++
T Consensus 133 ~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 205 (353)
T 2z80_A 133 GNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205 (353)
T ss_dssp TCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccC------CCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence 887776 444 56777788888887773 443333 3333 677888888888887777777888888888888
Q ss_pred CCCccccCcccc-ccCCCCCceeeccCcccccc
Q 047050 152 SHNNLIGGIPSS-LRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 152 ~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 183 (186)
++|.+. .+|.. +..+++|+.|++++|.+++.
T Consensus 206 ~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 206 HMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ECSCST-THHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred CCCccc-cchhhhhhhcccccEEECCCCccccc
Confidence 888876 44443 44577888888888887653
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.2e-20 Score=140.47 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=125.7
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcc---eeee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMG---VRTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~---~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
+.++++.+.+. .+|..+. ++++.|++++|.+++..+..+..+. .+.+ +|.+.+..|..+.++++|++|++++|
T Consensus 34 ~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 34 RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45666777776 6776553 7899999999999987776666554 4455 56676666888999999999999988
Q ss_pred ccCCcCch----------------------hhhhcCCCCEEEecCccccc--CCC-CCCc---cc------------hhh
Q 047050 78 CLERPIPT----------------------SLIDYVNMNFLNVGNNKLSG--PIP-KCKN---IQ------------TER 117 (186)
Q Consensus 78 ~l~~~~~~----------------------~~~~l~~L~~L~l~~n~~~~--~~~-~~~~---~~------------~~~ 117 (186)
.++. +|. .+..+++|+.|++++|.+.. ..+ .+.. ++ ...
T Consensus 111 ~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 111 QLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp CCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred cCCc-cChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 8764 333 34556666666666666542 111 1111 00 001
Q ss_pred hcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 118 ILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 118 ~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
..++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..++.+++|+.|++++|.++ .+|
T Consensus 190 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 1256777778888887766778888888899999888888666667888888999999988886 555
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.5e-21 Score=153.02 Aligned_cols=170 Identities=17% Similarity=0.097 Sum_probs=127.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeeccccccc-------------------chhHhhcceeee-eceeeeecC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRI-------------------SNWMWDMGVRTF-TNNFHGRIP 60 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~-------------------~~~~~~l~~l~~-~~~~~~~~~ 60 (186)
|+.|++++|.+.+..| ++.+++|+.|++++|.+++.. +..+..++.+.+ .|.+.+..|
T Consensus 60 L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 137 (487)
T 3oja_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD 137 (487)
T ss_dssp CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGG
T ss_pred CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCc
Confidence 5678888888886665 788888888888888776433 222333444444 455555556
Q ss_pred cccccCCCCCEEEccCCccCCcCchhhh-hcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHH
Q 047050 61 QTYVQGCNLDFLRLNGNCLERPIPTSLI-DYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEV 139 (186)
Q Consensus 61 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 139 (186)
..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+ ... +++|+.|++++|.+++. |+.
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~------l~~L~~L~Ls~N~l~~~-~~~ 209 (487)
T 3oja_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVV------FAKLKTLDLSSNKLAFM-GPE 209 (487)
T ss_dssp BCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCC------CTTCCEEECCSSCCCEE-CGG
T ss_pred hhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-ccc------CCCCCEEECCCCCCCCC-CHh
Confidence 6777788888888888888776666665 67888888888888775432 223 78899999999999884 445
Q ss_pred hhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 140 VGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 140 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+..+++|+.|++++|.++ .+|..++.+++|+.+++++|++.
T Consensus 210 ~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 888999999999999998 57888888999999999999886
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=3.4e-20 Score=130.77 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=91.3
Q ss_pred CcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCc-cCchhh
Q 047050 60 PQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNR-FQEKIL 137 (186)
Q Consensus 60 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~ 137 (186)
++.+..+++|++|++++|.++...+..++.+++|++|++++|.+.+..+ .+.. +++|++|++++|. ++. ++
T Consensus 81 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~------l~~L~~L~L~~n~~i~~-~~ 153 (197)
T 4ezg_A 81 YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT------LPKVNSIDLSYNGAITD-IM 153 (197)
T ss_dssp CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT------CSSCCEEECCSCTBCCC-CG
T ss_pred chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh------CCCCCEEEccCCCCccc-cH
Confidence 3467889999999999999987677888999999999999999886444 2333 8899999999998 655 44
Q ss_pred HHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 138 EVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 154 -~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 -PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred -hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 68889999999999999984 44 78889999999999999864
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.2e-20 Score=150.80 Aligned_cols=176 Identities=19% Similarity=0.105 Sum_probs=133.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.|.+...-+..+..+++|+.|++++|.+.+..+..+..+.. |.+ +|.+.+..|..+.++++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 356788888888555566789999999999999999887777766544 455 6777776777789999999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchh-------------------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKI------------------- 136 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~------------------- 136 (186)
|.++...+..|+.+++|++|++++|.+.+..| .+.. +++|++|++++|.+++..
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA------TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT------CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc------CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccc
Confidence 99998444557899999999999999987766 3333 334444444444333211
Q ss_pred ----------------------------------------hHHhhccCCCCEEEcCCCccccCccccccCCCCCceeecc
Q 047050 137 ----------------------------------------LEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 137 ----------------------------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 176 (186)
+.++..+++|+.|++++|.+.+..|..++.+++|+.|+++
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 2456777888888888888887778888888899999999
Q ss_pred Cccccc
Q 047050 177 LNKFVE 182 (186)
Q Consensus 177 ~n~l~~ 182 (186)
+|.+++
T Consensus 287 ~N~l~~ 292 (597)
T 3oja_B 287 NNRLVA 292 (597)
T ss_dssp TSCCCE
T ss_pred CCCCCC
Confidence 988865
No 59
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=6.8e-20 Score=132.16 Aligned_cols=151 Identities=18% Similarity=0.161 Sum_probs=116.9
Q ss_pred eeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcC
Q 047050 4 NWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI 83 (186)
Q Consensus 4 ~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 83 (186)
++.+.+.+. .+|..+. ++|+.|++++|.+.+ ..|..+.++++|++|++++|.++...
T Consensus 24 v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~--------------------~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 24 VDCRSKRHA-SVPAGIP--TNAQILYLHDNQITK--------------------LEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSSCCCC--------------------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred eEccCCCcC-ccCCCCC--CCCCEEEcCCCccCc--------------------cCHHHhhCccCCcEEECCCCCCCCcC
Confidence 344455555 6776553 788888998888874 34556678888999999999988744
Q ss_pred chhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccc
Q 047050 84 PTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPS 162 (186)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 162 (186)
+..|..+++|+.|++++|.+++..+. +.. +++|++|++++|.++. +|..+..+++|+.|++++|.+++..+.
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~------l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDR------LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCc------chhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHH
Confidence 45678889999999999988865553 334 7889999999999874 677788889999999999998865556
Q ss_pred cccCCCCCceeeccCccccccC
Q 047050 163 SLRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~i 184 (186)
.+..+++|+.+++++|++.+..
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTB
T ss_pred HHhCCCCCCEEEeeCCCccCCc
Confidence 7888889999999999887653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=5.4e-21 Score=144.13 Aligned_cols=170 Identities=17% Similarity=0.109 Sum_probs=123.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeeccccccc-------------------chhHhhcceeee-eceeeeecC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRI-------------------SNWMWDMGVRTF-TNNFHGRIP 60 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~-------------------~~~~~~l~~l~~-~~~~~~~~~ 60 (186)
|+.++++.|.+.+..| ++.+++|+.|++++|.+++.. +..+..++.+.+ .|.+.+..+
T Consensus 60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGG
T ss_pred CCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccc
Confidence 5678888888876554 788888888888888776432 222223333444 444444445
Q ss_pred cccccCCCCCEEEccCCccCCcCchhh-hhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHH
Q 047050 61 QTYVQGCNLDFLRLNGNCLERPIPTSL-IDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEV 139 (186)
Q Consensus 61 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 139 (186)
..+..+++|++|++++|.++...+..+ ..+++|++|++++|.+.+. +.... +++|++|++++|.+++ ++..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~------l~~L~~L~Ls~N~l~~-l~~~ 209 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVV------FAKLKTLDLSSNKLAF-MGPE 209 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCC------CTTCCEEECCSSCCCE-ECGG
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccc------cccCCEEECCCCcCCc-chhh
Confidence 566677778888888887776545555 3567788888888877654 22222 7889999999999987 4555
Q ss_pred hhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 140 VGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 140 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+..+++|+.|++++|.++ .+|..+..+++|+.+++++|++.
T Consensus 210 ~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 888999999999999998 68888999999999999999987
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.2e-19 Score=128.88 Aligned_cols=154 Identities=19% Similarity=0.150 Sum_probs=125.6
Q ss_pred cEEEeeecccccccchhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccc
Q 047050 26 QLLIISRNQIHGRISNWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLS 104 (186)
Q Consensus 26 ~~L~l~~n~i~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 104 (186)
+.++.+++.+..........++.+.+ +|.+.+..+..+..+++|++|++++|+++...+..|..+++|++|++++|.++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC
Confidence 56777777776443334456788877 55555444556789999999999999999855556789999999999999998
Q ss_pred cCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 105 GPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.
T Consensus 90 ~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 90 SLPNGVFDK------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred ccCHhHhcC------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 65553 344 89999999999999987777788999999999999999966666689999999999999999988
Q ss_pred CC
Q 047050 184 IP 185 (186)
Q Consensus 184 ip 185 (186)
.|
T Consensus 164 ~~ 165 (208)
T 2o6s_A 164 CP 165 (208)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=6.1e-20 Score=141.91 Aligned_cols=174 Identities=17% Similarity=0.104 Sum_probs=129.4
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.++++.+.+...-+..++.+++|+.|++++|.+.+..+..+..+ +.+.+ +|.+.+..|..+.++++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 4578888888884333457899999999999999987777666655 44455 6666666677789999999999999
Q ss_pred CccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEE------------------------------
Q 047050 77 NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATI------------------------------ 125 (186)
Q Consensus 77 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l------------------------------ 125 (186)
|.++...+..|+.+++|++|++++|.+.+..+. +.. +++|++|
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA------TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS------CTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSE
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC------CCCCCEEECCCCcCCccccccccccceeecccccccc
Confidence 999974334468999999999999999876552 333 3333333
Q ss_pred -------------------------------eccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceee
Q 047050 126 -------------------------------DLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLD 174 (186)
Q Consensus 126 -------------------------------~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 174 (186)
++++|.+++. .++..+++|+.|++++|.+++..|..++.+++|+.|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 3333333331 3566678888888888888877788888888888888
Q ss_pred ccCccccc
Q 047050 175 LSLNKFVE 182 (186)
Q Consensus 175 l~~n~l~~ 182 (186)
+++|.+++
T Consensus 279 L~~n~l~~ 286 (390)
T 3o6n_A 279 ISNNRLVA 286 (390)
T ss_dssp CCSSCCCE
T ss_pred CCCCcCcc
Confidence 88888764
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.3e-19 Score=136.16 Aligned_cols=169 Identities=13% Similarity=0.127 Sum_probs=82.2
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhc---ceeeeeceeeeecCcccccCCCCCEEEccCCc
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNC 78 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 78 (186)
+.+++++|.+. .+| .+..+++|+.|++++|.+.+..+ +..+ +.+.+.++-...++ .+..+++|++|++++|.
T Consensus 44 ~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 44 TTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC
T ss_pred CEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC
Confidence 44555555554 233 35555555555555555544332 3222 22333222222222 34445555555555555
Q ss_pred cCCcCchhhhhcCCCCEEEecCcccccCCCCCCc----------------cchhhhcCcccEEeccCCccCchhhHHhhc
Q 047050 79 LERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKN----------------IQTERILTTSATIDLSSNRFQEKILEVVGK 142 (186)
Q Consensus 79 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~ 142 (186)
++. ++. +..+++|+.|++++|.+.+..+ +.. ......+++|+.|++++|.+++..+ +..
T Consensus 119 l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~ 193 (308)
T 1h6u_A 119 ITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193 (308)
T ss_dssp CCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred CCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh--hcC
Confidence 544 222 4444555555555554443211 111 0011225666666666666655332 556
Q ss_pred cCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 143 LNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 143 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
+++|+.|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 194 l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 666666666666666332 25666667777777666653
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=4e-21 Score=154.29 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=115.3
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNG 76 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~ 76 (186)
++.+++++|.+.+..|..|+++++|+.|++++|.+.+..|+.+..+.. +.+ +|.+.+..|..+.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 456777777777777777778888888888888777666666555433 344 4445544444577777777777777
Q ss_pred CccCC-cCchhhhhcCCCCEEEecCcccccCCC--CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCC
Q 047050 77 NCLER-PIPTSLIDYVNMNFLNVGNNKLSGPIP--KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISH 153 (186)
Q Consensus 77 n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 153 (186)
|.++. ..+..++.+++|++|++++|...+.++ .+.+ +++|++|++++|.+++..|..++.+++|+.++++.
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG------LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhc------ccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 77764 245566777777777777776333332 3333 67777777777777776677776666677777766
Q ss_pred CccccCcccc-ccCCCCCceeeccCccccc
Q 047050 154 NNLIGGIPSS-LRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 154 n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~ 182 (186)
|.+. .+|.. +..+++|+.|++++|.+++
T Consensus 182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 182 SESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp SBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred Cccc-ccchhhHhhcccccEEEccCCcccc
Confidence 6655 34443 3456777777777777765
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=152.06 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=77.6
Q ss_pred cceeee-eceeeeecCcccccCCCCCEEEccCCccCCc--CchhhhhcCCCCEEEecCcccccCCC-C-CCcc-------
Q 047050 46 MGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERP--IPTSLIDYVNMNFLNVGNNKLSGPIP-K-CKNI------- 113 (186)
Q Consensus 46 l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~-~-~~~~------- 113 (186)
++.+.+ +|.+.+..|..+.++++|++|++++|++++. +|..++.+++|+.|++++|.+.+.+| . +...
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 333444 3444444555555566666666666665541 12335555666666666666554233 1 1110
Q ss_pred --------chhhhc-CcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccc-ccCCCCCceeeccCcccccc
Q 047050 114 --------QTERIL-TTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSS-LRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 114 --------~~~~~~-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~ 183 (186)
.....+ ++|++|++++|.++. +|..+..+++|+.|++++|.++ .+|.. +..+++|+.+++++|++.++
T Consensus 435 l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCSSCCCGGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCcchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 000112 467777777777764 5555557777777777777777 45554 77777777777777777664
Q ss_pred C
Q 047050 184 I 184 (186)
Q Consensus 184 i 184 (186)
.
T Consensus 513 c 513 (562)
T 3a79_B 513 C 513 (562)
T ss_dssp H
T ss_pred c
Confidence 3
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=147.58 Aligned_cols=175 Identities=14% Similarity=0.194 Sum_probs=133.9
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeeccccccc--chhHhhcce---eee-eceeeeecCcccccCCCCCEEEcc
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRI--SNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
+.++++.|.+.+.++. ..+++|+.|++++|.+.+.. +..+..+.. +.+ +|.+. .++..+..+++|++|+++
T Consensus 328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECT
T ss_pred CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEcc
Confidence 3445555555544443 56788888888888877543 555555444 444 44444 444458888999999999
Q ss_pred CCccCCcCc-hhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccC-chhhHHhhccCCCCEEEcC
Q 047050 76 GNCLERPIP-TSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQ-EKILEVVGKLNSLKNSNIS 152 (186)
Q Consensus 76 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 152 (186)
+|.+.+..+ ..+..+++|++|++++|.+.+..+ .+.+ +++|++|++++|.+. +.+|..+..+++|+.|+++
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------CCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 998887444 467888999999999998887666 3334 889999999999997 5678889999999999999
Q ss_pred CCccccCccccccCCCCCceeeccCccccccCC
Q 047050 153 HNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 153 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+|.+++..|..++++++|+.|++++|.+++.+|
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 999997779999999999999999999987655
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=5.6e-20 Score=138.12 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=131.7
Q ss_pred CeeeeeecCCccccCchhh--hcccCccEEEeeecccccccch----h---Hhhcceeee-eceeeeecCcccccCCCCC
Q 047050 1 MVINWIQLQPLDCEFPDVL--KTQHQLQLLIISRNQIHGRISN----W---MWDMGVRTF-TNNFHGRIPQTYVQGCNLD 70 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~--~~l~~L~~L~l~~n~i~~~~~~----~---~~~l~~l~~-~~~~~~~~~~~~~~l~~L~ 70 (186)
|+.++++.|.+.+..|..+ +.+++|+.|++++|.+.+..+. . +..++.+.+ +|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 5678999999999999888 8899999999999999875441 1 334555666 5566556667788888899
Q ss_pred EEEccCCccCCc--C--chhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhcc---
Q 047050 71 FLRLNGNCLERP--I--PTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKL--- 143 (186)
Q Consensus 71 ~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l--- 143 (186)
+|++++|++.+. + +..++.+++|++|++++|.++...+.. ......+++|++|++++|.+++..|..+..+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC--AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH--HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH--HHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 999998887541 1 122356788889999888875211100 0012346889999999999988767666666
Q ss_pred CCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 144 NSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 144 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
++|+.|++++|.++ .+|..+. ++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 68999999999998 6777764 789999999999886
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=145.98 Aligned_cols=91 Identities=21% Similarity=0.261 Sum_probs=50.3
Q ss_pred hhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCc--hhhHHhhccCCCCEEEcCCCccccCccc-c
Q 047050 88 IDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQE--KILEVVGKLNSLKNSNISHNNLIGGIPS-S 163 (186)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~ 163 (186)
..+++|++|++++|.+.+..| .+.. +++|++|++++|.+++ ..|..+..+++|+.|++++|.+++.+|. .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCST------LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCS------CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhhhcc------cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 344556666666666655443 2333 5666666666666654 2344555666666666666666643443 2
Q ss_pred ccCCCCCceeeccCccccccC
Q 047050 164 LRNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 164 ~~~l~~L~~L~l~~n~l~~~i 184 (186)
+..+++|+.|++++|.+++.+
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGG
T ss_pred hcCcccCCEEECCCCCCCcch
Confidence 455555555555555555443
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.9e-19 Score=135.27 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=93.2
Q ss_pred hhcccCccEEEeeecccccccc--hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEE
Q 047050 19 LKTQHQLQLLIISRNQIHGRIS--NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFL 96 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 96 (186)
.+++++|+.|++++|.+... + ..+..++.+.+.++-...++. +..+++|++|++++|.++. ++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 46789999999999998753 3 223445666664444444555 8999999999999999987 44 68899999999
Q ss_pred EecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeecc
Q 047050 97 NVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 97 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 176 (186)
++++|.+.+.. .+.. +++|++|++++|.+++..+ +..+++|+.|++++|.+++ ++. +..+++|+.|+++
T Consensus 113 ~l~~n~l~~~~-~l~~------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 113 DLTSTQITDVT-PLAG------LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp ECTTSCCCCCG-GGTT------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred ECCCCCCCCch-hhcC------CCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 99999987542 2322 4455555555555544222 4444445555555554442 222 4444444444444
Q ss_pred Cccc
Q 047050 177 LNKF 180 (186)
Q Consensus 177 ~n~l 180 (186)
+|.+
T Consensus 182 ~n~l 185 (308)
T 1h6u_A 182 DNKI 185 (308)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 4444
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=5.3e-20 Score=147.79 Aligned_cols=181 Identities=16% Similarity=0.127 Sum_probs=127.5
Q ss_pred CeeeeeecCCccccCchhh-hcccCccEEEeeecccccccchh------Hhhcceeee-eceeeeec--CcccccCCCCC
Q 047050 1 MVINWIQLQPLDCEFPDVL-KTQHQLQLLIISRNQIHGRISNW------MWDMGVRTF-TNNFHGRI--PQTYVQGCNLD 70 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~-~~l~~L~~L~l~~n~i~~~~~~~------~~~l~~l~~-~~~~~~~~--~~~~~~l~~L~ 70 (186)
|+.++++.|.+. .+|..+ +.+++|+.|++++|.+.+.+|.. +..++.+.+ +|.+.+.. +..+..+++|+
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 456778888876 777666 56888888888888887655432 234555555 34333221 13467777888
Q ss_pred EEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCC----CCcc--------chhhhcCcccEEeccCCccCchhhH
Q 047050 71 FLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK----CKNI--------QTERILTTSATIDLSSNRFQEKILE 138 (186)
Q Consensus 71 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~--------~~~~~~~~L~~l~l~~n~l~~~~~~ 138 (186)
+|++++|+++. +|..+..+++|++|++++|.+...... ...+ .....+++|++|++++|+++. +|.
T Consensus 391 ~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~-ip~ 468 (549)
T 2z81_A 391 SLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT-LPD 468 (549)
T ss_dssp EEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CCC
T ss_pred EEECCCCCCcc-CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCc-CCC
Confidence 88888888875 677777777778888877776532211 1000 011247889999999999975 555
Q ss_pred HhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 139 VVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 139 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
...+++|+.|++++|.+++..|..++.+++|+.+++++|++.+..|
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3568999999999999998778889999999999999999987754
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.8e-19 Score=133.28 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=131.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.++++.|.+. .+| .++.+++|+.|++++|.+.+..+ ..+..++.+.+.++-...++ .+..+++|++|++++|.+
T Consensus 48 L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i 124 (291)
T 1h6t_A 48 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGI 124 (291)
T ss_dssp CCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCC
T ss_pred ccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcC
Confidence 467888889887 444 48999999999999999987554 22233455555443333444 488899999999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
+. + ..+..+++|+.|++++|.+.+. +.+.. +++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 125 ~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 125 SD-I-NGLVHLPQLESLYLGNNKITDI-TVLSR------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp CC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGG------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CC-C-hhhcCCCCCCEEEccCCcCCcc-hhhcc------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 87 4 5688999999999999998754 33333 8999999999999988555 8889999999999999984
Q ss_pred ccccccCCCCCceeeccCccccc
Q 047050 160 IPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
++ .+..+++|+.|++++|+++.
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred Ch-hhccCCCCCEEECcCCcccC
Confidence 55 48999999999999998864
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=7.3e-20 Score=145.45 Aligned_cols=174 Identities=15% Similarity=0.063 Sum_probs=123.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeee-eceeeeecCcc----------------
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFHGRIPQT---------------- 62 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~~~~~~~---------------- 62 (186)
|+.|++++|.+.+..|..|+.+++|+.|++++|.+++..| ..+..++.|.+ +|.+.+ +|..
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~~~~~L~~L~L~~N~l~~~ 114 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRV 114 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCCCE
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-CCCCCCcCEEECcCCcCCCC
Confidence 5788999999998888899999999999999999987665 22334555555 343332 2211
Q ss_pred -cccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 63 -YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 63 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
...+++|++|++++|.+++..|..++.+++|++|++++|.+++..|... ...+++|++|++++|.+++. +. ..
T Consensus 115 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~l~~L~~L~Ls~N~l~~~-~~-~~ 188 (487)
T 3oja_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQYNFIYDV-KG-QV 188 (487)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred CccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----hhhCCcccEEecCCCccccc-cc-cc
Confidence 1234567777777777777556667777788888888887776544211 11267888888888888764 22 23
Q ss_pred ccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 142 KLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 142 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc
Confidence 47888888888888884 55568888889999999998875
No 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=5.7e-19 Score=134.29 Aligned_cols=167 Identities=20% Similarity=0.250 Sum_probs=86.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeee-eceee---------------------e
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFH---------------------G 57 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~---------------------~ 57 (186)
|+.++++.|.+.+.. + ++.+++|+.|++++|.+.+..+ ..+..++.+.+ .|.+. .
T Consensus 157 L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 157 LNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CcEEEecCCCcCCch-h-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence 345566666655332 2 5666666666666666654322 11122222222 22222 1
Q ss_pred ecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhh
Q 047050 58 RIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKIL 137 (186)
Q Consensus 58 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~ 137 (186)
.++. +..+++|++|++++|.++. + ..+..+++|+.|++++|.+.+. + ....+++|++|++++|.+++..+
T Consensus 235 ~~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 235 DLSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-S------VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-G------GGGGCTTCSEEECCSSCCCGGGH
T ss_pred CCcc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-h------hhcCCCCCCEEECcCCcCCCcCh
Confidence 2222 4444445555555544443 2 2344445555555555544432 1 22236667777777777766666
Q ss_pred HHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 138 EVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 138 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
..+..+++|+.+++++|.+++..| ++.+++|+.+++++|.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 667777777777777777764444 666777777777777664
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.6e-19 Score=146.70 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=97.3
Q ss_pred CccEEEeeecccccccchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEec
Q 047050 24 QLQLLIISRNQIHGRISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVG 99 (186)
Q Consensus 24 ~L~~L~l~~n~i~~~~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 99 (186)
.++.|++++|.|++..+.++.++.. |.+ +|.+.+..+.+|.++++|++|++++|+++...+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 5566666666665444444443322 233 333434445567777788888888888777555567778888888888
Q ss_pred CcccccCCC-CCCccchhhhcCcccEEeccCCccCch-hhHHhhccCCCCEEEcCCCccccCccccccCCCCC----cee
Q 047050 100 NNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEF----ESL 173 (186)
Q Consensus 100 ~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L 173 (186)
+|++++..+ .+.. +++|++|++++|.+++. .|..++.+++|+.|++++|.+++..+..+..+..+ ..+
T Consensus 133 ~N~l~~l~~~~~~~------L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 133 ETNLASLENFPIGH------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp TSCCCCSTTCCCTT------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CCcCCCCChhhhhc------CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 887775544 3344 67788888888877653 46667777788888888887776666666554433 356
Q ss_pred eccCcccc
Q 047050 174 DLSLNKFV 181 (186)
Q Consensus 174 ~l~~n~l~ 181 (186)
+++.|.+.
T Consensus 207 ~ls~n~l~ 214 (635)
T 4g8a_A 207 DLSLNPMN 214 (635)
T ss_dssp ECTTCCCC
T ss_pred hcccCccc
Confidence 66666654
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=139.32 Aligned_cols=170 Identities=22% Similarity=0.206 Sum_probs=118.0
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhH----hhcceeee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWM----WDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
.++.+.+.+. .+|..+. +.++.|++++|.+++..++.+ ..++.|.+ +|.+.+..+..|.++++|++|++++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3556667776 5776553 468888999988876555543 33445555 45555555566788888888888888
Q ss_pred ccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHh---hccCCCCEEEcCC
Q 047050 78 CLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVV---GKLNSLKNSNISH 153 (186)
Q Consensus 78 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~---~~l~~L~~L~l~~ 153 (186)
+++...+..|..+++|+.|++++|.+.+..+ .+.. +++|++|++++|.+++..+..+ ..+++|+.|++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 8887555567888888888888888876554 3334 7788888888888877444444 4578888888888
Q ss_pred CccccCccccccCCCC--CceeeccCcccc
Q 047050 154 NNLIGGIPSSLRNLTE--FESLDLSLNKFV 181 (186)
Q Consensus 154 n~~~~~~~~~~~~l~~--L~~L~l~~n~l~ 181 (186)
|.++...+..+..++. ++.|++++|++.
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888544456676665 477888888765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=2e-19 Score=132.95 Aligned_cols=160 Identities=22% Similarity=0.217 Sum_probs=126.2
Q ss_pred cCchhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhh
Q 047050 14 EFPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLID 89 (186)
Q Consensus 14 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 89 (186)
++|..+. ++|+.|++++|.+++..+..+..+ +.+.+ +|.+.+..+..+.++++|++|++++|.++...+..+..
T Consensus 21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (276)
T 2z62_A 21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (276)
T ss_dssp SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC
Confidence 5666553 579999999999987776666554 55555 56666666678899999999999999999866788999
Q ss_pred cCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCch-hhHHhhccCCCCEEEcCCCccccCccccccCC
Q 047050 90 YVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNSLKNSNISHNNLIGGIPSSLRNL 167 (186)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 167 (186)
+++|++|++++|.+.+..+ .+.. +++|++|++++|.+++. +|..+..+++|+.|++++|.+++..+..+..+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGH------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTT------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred CccccEEECCCCCccccCchhccc------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 9999999999999986555 4444 88999999999999874 58899999999999999999986555566555
Q ss_pred CCCc----eeeccCcccc
Q 047050 168 TEFE----SLDLSLNKFV 181 (186)
Q Consensus 168 ~~L~----~L~l~~n~l~ 181 (186)
..++ .+++++|.++
T Consensus 173 ~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp HTCTTCCEEEECCSSCCC
T ss_pred hhccccceeeecCCCccc
Confidence 5444 5566666554
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=4.9e-19 Score=134.68 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=121.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.+++++|.....++. +..+++|+.|++++|.+.+..+ ..+..++.+.+.++-...++. +..+++|+++++++|.+
T Consensus 134 L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred eeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCC
Confidence 56789999977655554 8999999999999999976554 233445666664333333443 55566666666666666
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCc----------------cchhhhcCcccEEeccCCccCchhhHHhhcc
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKN----------------IQTERILTTSATIDLSSNRFQEKILEVVGKL 143 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l 143 (186)
... +. +..+++|+.|++++|.+.+..+ +.. ......+++|+++++++|.+++. +.+..+
T Consensus 212 ~~~-~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 212 TDI-TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp CCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred CCC-ch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 542 22 5555566666666655543222 100 12234478888999999988774 457788
Q ss_pred CCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 144 NSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 144 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|+.|++++|.+++..+..++.+++|+.|++++|++++..|
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 899999999999887788888999999999999999876543
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=136.47 Aligned_cols=173 Identities=14% Similarity=0.092 Sum_probs=133.7
Q ss_pred CeeeeeecCCccccCc----hhhhcccCccEEEeeecccccccchhHhhc---ceeee-eceeeee--c--CcccccCCC
Q 047050 1 MVINWIQLQPLDCEFP----DVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TNNFHGR--I--PQTYVQGCN 68 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~--~--~~~~~~l~~ 68 (186)
|+.++++.|.+.+..| ..+..+++|+.|++++|.+.+..+..+..+ +.+.+ +|.+.+. + +..+..+++
T Consensus 119 L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 119 LSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp CSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred CCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 5678999999987666 445679999999999999988777765554 55555 4444432 2 233468899
Q ss_pred CCEEEccCCccCCcCch----hhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhcc
Q 047050 69 LDFLRLNGNCLERPIPT----SLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKL 143 (186)
Q Consensus 69 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l 143 (186)
|++|++++|+++. ++. .++.+++|++|++++|.+.+..| .+.. ...+++|++|++++|.++. +|..+.
T Consensus 199 L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~~-lp~~~~-- 271 (310)
T 4glp_A 199 IQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR---CMWSSALNSLNLSFAGLEQ-VPKGLP-- 271 (310)
T ss_dssp CCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS---CCCCTTCCCEECCSSCCCS-CCSCCC--
T ss_pred CCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh---ccCcCcCCEEECCCCCCCc-hhhhhc--
Confidence 9999999999975 444 25788999999999999998755 3333 1113799999999999985 666653
Q ss_pred CCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 144 NSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 144 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
++|+.|+++.|.+++ +|. +..+++|+.|++++|+++.
T Consensus 272 ~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 799999999999994 444 6788999999999999974
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=4.5e-19 Score=128.45 Aligned_cols=169 Identities=12% Similarity=0.099 Sum_probs=134.4
Q ss_pred CeeeeeecCC-ccccCchhhhcccCccEEEeee-cccccccchhHhh---cceeeeeceeeeecCcccccCCCCC---EE
Q 047050 1 MVINWIQLQP-LDCEFPDVLKTQHQLQLLIISR-NQIHGRISNWMWD---MGVRTFTNNFHGRIPQTYVQGCNLD---FL 72 (186)
Q Consensus 1 l~~~~l~~~~-l~~~~p~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~---l~~l~~~~~~~~~~~~~~~~l~~L~---~L 72 (186)
|+.++++.|. +....+..|+.+++|+.|++++ |.+++..+..+.. ++.+.+.++-...+|. +..+++|+ +|
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L 135 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFIL 135 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEE
Confidence 5788999997 7755556899999999999999 9998766666544 5566664444445776 88888888 99
Q ss_pred EccCC-ccCCcCchhhhhcCCCC-EEEecCcccccCCCCCCccchhhhcCcccEEeccCCc-cCchhhHHhhcc-CCCCE
Q 047050 73 RLNGN-CLERPIPTSLIDYVNMN-FLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNR-FQEKILEVVGKL-NSLKN 148 (186)
Q Consensus 73 ~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~l-~~L~~ 148 (186)
++++| .++...+..|..+++|+ .+++++|.+....+.... .++|+++++++|+ +++..+..+..+ ++|+.
T Consensus 136 ~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~ 209 (239)
T 2xwt_C 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209 (239)
T ss_dssp EEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred ECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC------CCCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence 99999 99885556789999999 999999999843333323 3689999999995 988667888888 99999
Q ss_pred EEcCCCccccCccccccCCCCCceeeccCcc
Q 047050 149 SNISHNNLIGGIPSSLRNLTEFESLDLSLNK 179 (186)
Q Consensus 149 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 179 (186)
+++++|.++ .+|.. .+++|+.|+++++.
T Consensus 210 L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 210 LDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred EECCCCccc-cCChh--HhccCceeeccCcc
Confidence 999999998 55654 67788999998764
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=2.4e-18 Score=144.78 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=36.1
Q ss_pred cCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 119 LTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus 313 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 455555666666555544555555556666666666555444445555666666666666554
No 81
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.4e-18 Score=141.10 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=134.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.|.++.|.+. .+| .++.+++|+.|++++|.+.+..+ ..+..++.|.+.++-...++ .+..+++|++|++++|.+
T Consensus 45 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 45 IDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp CCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCC
T ss_pred CCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCC
Confidence 466788888887 455 58999999999999999987655 22334555566444333444 788999999999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
.. + ..+..+++|+.|++++|.+++. +.+.. +++|+.|++++|.+.+..| +..+++|+.|++++|.+++
T Consensus 122 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 122 SD-I-NGLVHLPQLESLYLGNNKITDI-TVLSR------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGS------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CC-C-ccccCCCccCEEECCCCccCCc-hhhcc------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 97 4 5688999999999999998864 33333 8999999999999988666 8889999999999999985
Q ss_pred ccccccCCCCCceeeccCcccccc
Q 047050 160 IPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 160 ~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+ ..+..+++|+.|++++|++.+.
T Consensus 190 l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C-GGGTTCTTCSEEECCSEEEECC
T ss_pred C-hHHccCCCCCEEEccCCcCcCC
Confidence 4 4689999999999999998754
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=4.7e-19 Score=133.53 Aligned_cols=176 Identities=15% Similarity=0.072 Sum_probs=122.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeee-eceeeeecCcc----------------
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFHGRIPQT---------------- 62 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~~~~~~~---------------- 62 (186)
|+.++++.|.+.+..|..|+.+++|+.|++++|.+.+..+ ..+..++.+.+ +|.+.+ ++..
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRV 114 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEE
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCc
Confidence 5678999999998888899999999999999999986554 22334455555 333332 2110
Q ss_pred -cccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhh
Q 047050 63 -YVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG 141 (186)
Q Consensus 63 -~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~ 141 (186)
...+++|++|++++|+++...+..++.+++|++|++++|.+.+..+.. ....+++|++|++++|.+++. +.. .
T Consensus 115 ~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~-~~~-~ 188 (317)
T 3o53_A 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KGQ-V 188 (317)
T ss_dssp EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-ECC-C
T ss_pred CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccc-ccc-c
Confidence 122456677777777777644556777777777777777776543311 112267888888888888764 322 2
Q ss_pred ccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 142 KLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 142 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|
T Consensus 189 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~ 230 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIE 230 (317)
T ss_dssp CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EEC
T ss_pred ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chh
Confidence 4788899999999888 56666888899999999999887 344
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=1.7e-18 Score=127.31 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=119.6
Q ss_pred eeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 4 NWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 4 ~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
++++.+.+. .++ .++.+++|+.|++++|.+..... ..+..++.+.+.++-...++. +.++++|++|++++|+++.
T Consensus 24 l~l~~~~i~-~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~- 99 (263)
T 1xeu_A 24 QNLGKQSVT-DLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN- 99 (263)
T ss_dssp HHHTCSCTT-SEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-
T ss_pred HHhcCCCcc-ccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-
Confidence 345556666 344 56778888888888887764221 122344555553333334554 8889999999999999987
Q ss_pred CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPS 162 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 162 (186)
++.. .. ++|+.|++++|.+++. +.+.. +++|++|++++|++++. + .+..+++|+.|++++|.+++. .
T Consensus 100 l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 100 LNGI-PS-ACLSRLFLDNNELRDT-DSLIH------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp CTTC-CC-SSCCEEECCSSCCSBS-GGGTT------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred cCcc-cc-CcccEEEccCCccCCC-hhhcC------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 4443 23 8899999999998853 33334 88999999999999874 3 688899999999999999854 6
Q ss_pred cccCCCCCceeeccCcccccc
Q 047050 163 SLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 163 ~~~~l~~L~~L~l~~n~l~~~ 183 (186)
.++.+++|+.|++++|++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 788999999999999988754
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=3.8e-18 Score=134.76 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=26.2
Q ss_pred cCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 119 LTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+++|+++++++|.+++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|.++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 34444444444444332 233444444444444444443333 444444555555555444
No 85
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=9.5e-19 Score=122.89 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=96.4
Q ss_pred cEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCch-hhhhcCCCCEEEecCcccc
Q 047050 26 QLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPT-SLIDYVNMNFLNVGNNKLS 104 (186)
Q Consensus 26 ~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~ 104 (186)
+.+++++|.++ .+|..+.. ++++|++++|.++...+. .++.+++|++|++++|.++
T Consensus 11 ~~l~~s~~~l~---------------------~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (192)
T 1w8a_A 11 TTVDCTGRGLK---------------------EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67 (192)
T ss_dssp TEEECTTSCCS---------------------SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCcC---------------------cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC
Confidence 67888888885 45544433 678888888888764333 3777888888888888887
Q ss_pred cCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 105 GPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+..| .+.+ +++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+.
T Consensus 68 ~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 68 GIEPNAFEG------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CBCTTTTTT------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCHhHcCC------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6655 3444 77788888888888776677777788888888888888877777788888888888888887765
Q ss_pred C
Q 047050 184 I 184 (186)
Q Consensus 184 i 184 (186)
.
T Consensus 142 c 142 (192)
T 1w8a_A 142 C 142 (192)
T ss_dssp G
T ss_pred C
Confidence 4
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=123.58 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=112.4
Q ss_pred eeeeeecCCccccCc-hhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 2 VINWIQLQPLDCEFP-DVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
+.++++.|.+.+..| ..|+.+++|+.|++++|.+++ ..+..+.++++|++|++++|.++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--------------------i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--------------------IEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--------------------ECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--------------------ECHHHhCCCCCCCEEECCCCccC
Confidence 578999999997755 458999999999999999973 33446788889999999999999
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
+..+..|..+++|++|++++|++.+..| .+.. +++|++|++++|.+++..|..+..+++|+.+++++|.+...
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG------LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT------CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC------CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8666778899999999999999987766 4444 78999999999999987788999999999999999998754
Q ss_pred c
Q 047050 160 I 160 (186)
Q Consensus 160 ~ 160 (186)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.2e-18 Score=132.13 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=123.0
Q ss_pred ccEEEeeecccccccchhH-hhcceeee-eceeeeecCcccc-cCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCc
Q 047050 25 LQLLIISRNQIHGRISNWM-WDMGVRTF-TNNFHGRIPQTYV-QGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNN 101 (186)
Q Consensus 25 L~~L~l~~n~i~~~~~~~~-~~l~~l~~-~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 101 (186)
-+.++.+++.++. +|..+ ..++.|.+ +|.+.+..+..+. ++++|++|++++|+++...+..|..+++|++|++++|
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCc-cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3689999999875 45443 45677877 5666655566676 8999999999999999866678999999999999999
Q ss_pred ccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccc-c---cCCCCCceeecc
Q 047050 102 KLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSS-L---RNLTEFESLDLS 176 (186)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~---~~l~~L~~L~l~ 176 (186)
++.+..+ .+.. +++|++|++++|.+++..+..|..+++|+.|++++|.++. +|.. + ..+++|+.|+++
T Consensus 99 ~l~~~~~~~~~~------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 99 HLHTLDEFLFSD------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCCEECTTTTTT------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECC
T ss_pred cCCcCCHHHhCC------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECC
Confidence 9986655 3444 8999999999999998888999999999999999999994 5544 4 578999999999
Q ss_pred Cccccc
Q 047050 177 LNKFVE 182 (186)
Q Consensus 177 ~n~l~~ 182 (186)
+|.+++
T Consensus 172 ~N~l~~ 177 (361)
T 2xot_A 172 SNKLKK 177 (361)
T ss_dssp SSCCCC
T ss_pred CCCCCc
Confidence 999974
No 88
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=2.2e-18 Score=118.31 Aligned_cols=134 Identities=21% Similarity=0.258 Sum_probs=99.6
Q ss_pred cccCccEEEeeecccc-cccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEec
Q 047050 21 TQHQLQLLIISRNQIH-GRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVG 99 (186)
Q Consensus 21 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 99 (186)
..++|+.|++++|.+. + .+|..+..+++|++|++++|.++. + ..++.+++|++|+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~--------------------~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDG--------------------KIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELS 79 (168)
T ss_dssp CTTSCSEEECCSCBCBTT--------------------BCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEE
T ss_pred CcccCCEEECCCCCCChh--------------------hHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECc
Confidence 3477888888888875 2 355556677788888888888876 3 667778888888888
Q ss_pred CcccccCCCCCCccchhhhcCcccEEeccCCccCchh-hHHhhccCCCCEEEcCCCccccCcc---ccccCCCCCceeec
Q 047050 100 NNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKI-LEVVGKLNSLKNSNISHNNLIGGIP---SSLRNLTEFESLDL 175 (186)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l 175 (186)
+|.+.+.+|. ....+++|++|++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++
T Consensus 80 ~N~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 80 ENRIFGGLDM-----LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp SCCCCSCCCH-----HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred CCcCchHHHH-----HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 8888765442 1222678888888888887642 2677788888899998888884433 36888888999999
Q ss_pred cCcccc
Q 047050 176 SLNKFV 181 (186)
Q Consensus 176 ~~n~l~ 181 (186)
++|.+.
T Consensus 155 ~~n~~~ 160 (168)
T 2ell_A 155 YDREDQ 160 (168)
T ss_dssp EETTSC
T ss_pred CCCChh
Confidence 888875
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.2e-18 Score=123.53 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=108.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
++.++++.|.+.+..+..|..+++|+.|++++|.+.+ ..|..|.++++|++|++++|.++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------------------~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------------------LAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------ECTTTTTTCSSCCEEECCSSCCC
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------cCHHHhhCCcCCCEEECCCCcCC
Confidence 4678999999997777789999999999999999974 34566778888999999999988
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCcccc
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
...+..|..+++|+.|++++|++.+..+ .+.. +++|++|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD------LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC------CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7444557888899999999998887655 3444 7888999999999888777778888889999999988763
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.5e-18 Score=123.16 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=107.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecC-cccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIP-QTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l 79 (186)
|+.+++++|.+.+..|..|..+++|+.|++++|.+.+ +| ..+..+++|++|++++|++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA---------------------LPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC---------------------CCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC---------------------cChhhcccCCCcCEEECCCCcC
Confidence 5789999999998889999999999999999999963 33 3456788899999999988
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
+...+..|..+++|+.|++++|++......+.. +++|++|++++|.+++..+..+..+++|+.+++++|.+...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIER------LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGG------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccChhHhCcchhhCeEeccCCcccccCccccc------CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 875555678888899999999888843334434 78888999999988876667788888899999999888754
Q ss_pred c
Q 047050 160 I 160 (186)
Q Consensus 160 ~ 160 (186)
.
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 4
No 91
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=5.5e-18 Score=133.85 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=134.7
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNC 78 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~ 78 (186)
|+.++++.|.+.+..| ++.+++|+.|++++|.+.+... ..+..++.+.+ .|.+.+ .+. +..+++|++|++++|.
T Consensus 201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQ 276 (466)
T ss_dssp CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSC
T ss_pred CCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCc
Confidence 5678999999986655 7889999999999999876411 22334555666 444444 333 7889999999999999
Q ss_pred cCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCcccc
Q 047050 79 LERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 79 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
+++ ++. +..+++|+.|++++|++.+..+ +.. +++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 277 l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 277 ISN-ISP-LAGLTALTNLELNENQLEDISP-ISN------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCC-CGG-GTTCTTCSEEECCSSCCSCCGG-GGG------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred cCc-ccc-ccCCCccCeEEcCCCcccCchh-hcC------CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 998 444 8889999999999999886443 333 8999999999999988655 6789999999999999985
Q ss_pred CccccccCCCCCceeeccCccccccCC
Q 047050 159 GIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 159 ~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
. ..++++++|+.|++++|++++.+|
T Consensus 346 ~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 346 V--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred c--hhhccCCCCCEEeCCCCccCccch
Confidence 4 478999999999999999987654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.5e-18 Score=139.90 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=67.3
Q ss_pred cCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 65 QGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 65 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
.+++|++|++++|.+++ +|. .+++|+.|++++|.+++ +|.+ .++|+.|++++|.++. +|. +..
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~l--------~~~L~~L~Ls~N~L~~-lp~-~~~-- 200 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPEL--------PESLEALDVSTNLLES-LPA-VPV-- 200 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCC--------CTTCCEEECCSSCCSS-CCC-CC---
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cchh--------hCCCCEEECcCCCCCc-hhh-HHH--
Confidence 34455555555555554 333 34455555555555554 2221 2678888888888874 444 433
Q ss_pred CC-------CEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 145 SL-------KNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 145 ~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 66 88899999888 688888889999999999999987765
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.6e-19 Score=139.44 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=40.0
Q ss_pred cCcccEEeccCCccCch----hhHHhhc--cCCCCEEEcCCCcccc----Cccccc-cCCCCCceeeccCccccccC
Q 047050 119 LTTSATIDLSSNRFQEK----ILEVVGK--LNSLKNSNISHNNLIG----GIPSSL-RNLTEFESLDLSLNKFVEHI 184 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~----~~~~~~~--l~~L~~L~l~~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~~~i 184 (186)
+++|++|++++|.+++. ++..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55666666666666543 3444433 5666677777666664 255555 44666777777777666543
No 94
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.76 E-value=4e-18 Score=134.44 Aligned_cols=146 Identities=16% Similarity=0.050 Sum_probs=70.9
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.++++.|.+.+ +| ++.+++|+.|++++|.+++..-..+..++.+.+ +|.+.+ ++ +.++++|++|++++|..
T Consensus 87 L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 87 LTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSC
T ss_pred CCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCc
Confidence 4566777777764 33 667777777777777776532223333444444 333332 22 44444555555555532
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCcc---------------chhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNI---------------QTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---------------~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
.+.+ .++.+++|+.|++++|.+++. | +... .....+++|++|++++|++++ +| +..++
T Consensus 161 ~~~~--~~~~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 161 ITKL--DVTPQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp CCCC--CCTTCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred cccc--ccccCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 2212 234444444555444444431 1 1110 001114555566666665555 33 44555
Q ss_pred CCCEEEcCCCccccC
Q 047050 145 SLKNSNISHNNLIGG 159 (186)
Q Consensus 145 ~L~~L~l~~n~~~~~ 159 (186)
+|+.|++++|.+++.
T Consensus 234 ~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 234 QLTYFDCSVNPLTEL 248 (457)
T ss_dssp TCSEEECCSSCCSCC
T ss_pred CCCEEEeeCCcCCCc
Confidence 566666666555543
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.1e-18 Score=139.19 Aligned_cols=125 Identities=21% Similarity=0.311 Sum_probs=93.6
Q ss_pred eceeeeecCcccccCCCCCEEEccCCcc-CCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccC
Q 047050 52 TNNFHGRIPQTYVQGCNLDFLRLNGNCL-ERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSS 129 (186)
Q Consensus 52 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~ 129 (186)
.|.+....+..+..++++++|++++|.. ....|..|..+++|+.|++++|++++..| .+.+ +++|++|++++
T Consensus 454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~------l~~L~~L~Ls~ 527 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------LSSLQVLNMSH 527 (635)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT------CTTCCEEECTT
T ss_pred ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC------CCCCCEEECCC
Confidence 4455555666667777888888887764 33456667778888888888888877665 3444 77888888888
Q ss_pred CccCchhhHHhhccCCCCEEEcCCCccccCccccccCC-CCCceeeccCccccc
Q 047050 130 NRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNL-TEFESLDLSLNKFVE 182 (186)
Q Consensus 130 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 182 (186)
|++++..+..+..+++|+.|++++|.+++..|+.+..+ ++|+.|++++|++..
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88888777778888888888888888887777778777 578888888887764
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=7.7e-19 Score=134.61 Aligned_cols=180 Identities=16% Similarity=0.118 Sum_probs=89.2
Q ss_pred eeeeeecCCccccCc----hhhhccc-CccEEEeeecccccccchhHhh--------cceeee-eceeeeecCcc----c
Q 047050 2 VINWIQLQPLDCEFP----DVLKTQH-QLQLLIISRNQIHGRISNWMWD--------MGVRTF-TNNFHGRIPQT----Y 63 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~--------l~~l~~-~~~~~~~~~~~----~ 63 (186)
+.+++++|.+.+..+ +.++.++ +|+.|++++|.+++..+..+.. ++.+.+ +|.+.+..+.. +
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 445555555554444 4444555 5555555555555444433322 233333 23332222222 2
Q ss_pred ccC-CCCCEEEccCCccCCcCchhhhhc-----CCCCEEEecCcccccCCCCCCccchhhhc-CcccEEeccCCccCchh
Q 047050 64 VQG-CNLDFLRLNGNCLERPIPTSLIDY-----VNMNFLNVGNNKLSGPIPKCKNIQTERIL-TTSATIDLSSNRFQEKI 136 (186)
Q Consensus 64 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~l~l~~n~l~~~~ 136 (186)
..+ ++|++|++++|.++...+..++.. ++|++|++++|.+.+...... ....... .+|++|++++|.+++..
T Consensus 105 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL-IQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH-HHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH-HHHHhcCCccccEeeecCCCCchhh
Confidence 222 455555555555554333333221 355555555555542211000 0011112 37777777777776655
Q ss_pred hHHhhc----c-CCCCEEEcCCCccccC----ccccccCC-CCCceeeccCccccc
Q 047050 137 LEVVGK----L-NSLKNSNISHNNLIGG----IPSSLRNL-TEFESLDLSLNKFVE 182 (186)
Q Consensus 137 ~~~~~~----l-~~L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~l~~n~l~~ 182 (186)
+..+.. . ++|+.|++++|.+++. ++..+... ++|++|++++|.+++
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 544333 3 4778888888877742 44455553 477888888887764
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6.8e-20 Score=147.89 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=131.0
Q ss_pred eeeeeecCCccccCchhhhcccCccEEEeeecc-------------cccccchhHhhccee---e-eeceeeeecCc---
Q 047050 2 VINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQ-------------IHGRISNWMWDMGVR---T-FTNNFHGRIPQ--- 61 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~l~~l---~-~~~~~~~~~~~--- 61 (186)
+.|+++.|.+. .+|+.++++++|+.|++++|. ..+..|+.+..+..| . +..+....++.
T Consensus 352 ~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l 430 (567)
T 1dce_A 352 FRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 430 (567)
T ss_dssp SSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred eeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhh
Confidence 35677788887 889999999999999987764 445566665555443 2 11110000110
Q ss_pred ---cccc--CCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCch
Q 047050 62 ---TYVQ--GCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEK 135 (186)
Q Consensus 62 ---~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~ 135 (186)
.+.. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+| .+.. +++|+.|++++|.+++
T Consensus 431 ~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~------l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 431 LENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA------LRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG------CTTCCEEECCSSCCCC-
T ss_pred hcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc------CCCCCEEECCCCCCCC-
Confidence 0111 1258899999999998 676 999999999999999998 445 4444 8999999999999988
Q ss_pred hhHHhhccCCCCEEEcCCCccccCc-cccccCCCCCceeeccCccccccCC
Q 047050 136 ILEVVGKLNSLKNSNISHNNLIGGI-PSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 136 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|++++.+|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 56 8889999999999999999665 9999999999999999999987755
No 98
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=3.4e-19 Score=137.60 Aligned_cols=111 Identities=13% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCCEEEccCCccC-CcCc---hhhhhcCCCCEEEecCccccc-----CCCCCCccchhhhcCcccEEeccCCccC----
Q 047050 67 CNLDFLRLNGNCLE-RPIP---TSLIDYVNMNFLNVGNNKLSG-----PIPKCKNIQTERILTTSATIDLSSNRFQ---- 133 (186)
Q Consensus 67 ~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~~~~~~L~~l~l~~n~l~---- 133 (186)
++|++|++++|.++ ..++ ..+..+++|++|++++|.+.. ..+ .....+++|++|++++|.++
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~-----~~l~~~~~L~~L~Ls~n~l~~~g~ 233 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-----EGLAYCQELKVLDLQDNTFTHLGS 233 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH-----TTGGGCTTCCEEECCSSCCHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH-----HHhhcCCCccEEECcCCCCCcHHH
Confidence 45555555555544 1122 234445555555555554431 011 01223667778888888775
Q ss_pred chhhHHhhccCCCCEEEcCCCccccC----cccccc--CCCCCceeeccCccccc
Q 047050 134 EKILEVVGKLNSLKNSNISHNNLIGG----IPSSLR--NLTEFESLDLSLNKFVE 182 (186)
Q Consensus 134 ~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~--~l~~L~~L~l~~n~l~~ 182 (186)
..++..+..+++|+.|++++|.+++. ++..+. .+++|+.|++++|.+++
T Consensus 234 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 44667777777788888888877644 455553 37778888888887765
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-17 Score=116.77 Aligned_cols=132 Identities=16% Similarity=0.259 Sum_probs=113.1
Q ss_pred hhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEe
Q 047050 19 LKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNV 98 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 98 (186)
.+.+++|+.|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~---------------------~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l 95 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT---------------------DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRI 95 (197)
T ss_dssp HHHHHTCCEEEEESSCCS---------------------CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEE
T ss_pred hhhcCCccEEeccCCCcc---------------------ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEe
Confidence 366788888888888886 455 57888999999999997765 357889999999999
Q ss_pred cCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCc-cccCccccccCCCCCceeecc
Q 047050 99 GNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNN-LIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 99 ~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~ 176 (186)
++|.+.+..+ .+.. +++|++|++++|.+++..+..+..+++|+.|++++|. ++ .++ .++.+++|+.|+++
T Consensus 96 ~~n~l~~~~~~~l~~------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSG------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp ECTTCBGGGSCCCTT------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECT
T ss_pred ECCccCcccChhhcC------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECC
Confidence 9999987444 4445 8999999999999998889999999999999999998 65 566 68999999999999
Q ss_pred Cccccc
Q 047050 177 LNKFVE 182 (186)
Q Consensus 177 ~n~l~~ 182 (186)
+|.+++
T Consensus 168 ~n~i~~ 173 (197)
T 4ezg_A 168 FDGVHD 173 (197)
T ss_dssp TBCCCC
T ss_pred CCCCcC
Confidence 999874
No 100
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=9.8e-18 Score=132.13 Aligned_cols=138 Identities=20% Similarity=0.263 Sum_probs=90.0
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
|+.++++.|.+.+ +| .++++++|+.|++++|.+++ +|.....++.+.+.++....+| .+.++++|++|++++|.++
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC
Confidence 4677888888884 77 58888899999999988875 6666677788877444434466 5778888888888888877
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccc
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
+ +|.. ..+|+.|++++|.+. .+|++.. +++|+++++++|.+++ +|.. .++|+.|++++|.++
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp~~~~------l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELPELQN------LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCCCCTT------CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred c-CCCC---cCcccEEECcCCcCC-cccccCC------CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 6 4432 246777777777766 3444433 5566666666666554 2221 244555555555544
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.7e-17 Score=130.81 Aligned_cols=170 Identities=19% Similarity=0.162 Sum_probs=123.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.++++.|.+.+ +| .++.+++|+.|++++|.+++..-..+..++.+.+ +|.+.+ ++ +.++++|++|++++|++
T Consensus 44 L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 44 LTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCC
T ss_pred CCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcC
Confidence 5678899999885 45 6889999999999999998753344455566666 444443 43 77888899999999988
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCC-CCCcc-------------chhhhcCcccEEeccCCccCchhhHHhhccCC
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNI-------------QTERILTTSATIDLSSNRFQEKILEVVGKLNS 145 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~-------------~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~ 145 (186)
++ ++ ++.+++|++|++++|.+++..- .+..+ .....+++|++|++++|.+++ ++ +..+++
T Consensus 119 ~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~ 192 (457)
T 3bz5_A 119 TK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKL 192 (457)
T ss_dssp SC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTT
T ss_pred Ce-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCC
Confidence 87 44 7788888888888888875311 11000 012346778888888888877 34 667788
Q ss_pred CCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 146 LKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 146 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
|+.+++++|.+++. .++.+++|+.|++++|++++ +|
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 88888888888743 37788889999999998876 54
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.5e-18 Score=132.95 Aligned_cols=179 Identities=19% Similarity=0.209 Sum_probs=105.2
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccc----hhHh----hcceeee-eceeeeecCcccccC-----CC
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS----NWMW----DMGVRTF-TNNFHGRIPQTYVQG-----CN 68 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~----~~~~----~l~~l~~-~~~~~~~~~~~~~~l-----~~ 68 (186)
++.++.|.+++.+|..++..++|+.|++++|.+++..+ +.+. .++.+.+ +|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45667777777777766666667777777777766555 4444 3444555 444444444444443 67
Q ss_pred CCEEEccCCccCCcCchhhhhc-----CCCCEEEecCcccccCCCCCCccchhhh-cCcccEEeccCCccCc----hhhH
Q 047050 69 LDFLRLNGNCLERPIPTSLIDY-----VNMNFLNVGNNKLSGPIPKCKNIQTERI-LTTSATIDLSSNRFQE----KILE 138 (186)
Q Consensus 69 L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~~L~~l~l~~n~l~~----~~~~ 138 (186)
|++|++++|.++...+..++.. ++|++|++++|.+++..+.... ..... ..+|++|++++|.+++ .++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK-QAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH-HHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH-HHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 7777777777766555544443 6777777777776643321000 01111 2467777777777763 2334
Q ss_pred HhhccC-CCCEEEcCCCccccCccccc----cCC-CCCceeeccCccccc
Q 047050 139 VVGKLN-SLKNSNISHNNLIGGIPSSL----RNL-TEFESLDLSLNKFVE 182 (186)
Q Consensus 139 ~~~~l~-~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~l~~ 182 (186)
.+...+ +|+.|++++|.+++..+..+ ..+ ++|++||+++|.+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 444444 77777777777765544433 333 477777777777654
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=7.3e-19 Score=133.10 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=44.1
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccc-cchhHhhcce---eee-eceeeeecCcccccCCCCCEEEccCC
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGR-ISNWMWDMGV---RTF-TNNFHGRIPQTYVQGCNLDFLRLNGN 77 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~---l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n 77 (186)
.+++..|.+.+..++ +..+++|+.|++++|.+.+. ++..+..+.. +.+ +|.+.+..+..+.++++|++|++++|
T Consensus 74 ~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 74 AFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp EEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred EEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 344555555444333 33455555555555554433 3333333222 222 33333344444445555555555555
Q ss_pred -ccCC-cCchhhhhcCCCCEEEecCc
Q 047050 78 -CLER-PIPTSLIDYVNMNFLNVGNN 101 (186)
Q Consensus 78 -~l~~-~~~~~~~~l~~L~~L~l~~n 101 (186)
.++. .++..+..+++|++|++++|
T Consensus 153 ~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 153 SGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 3432 13333445555555555555
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.8e-19 Score=146.74 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=49.1
Q ss_pred CchhhhcccCccEEEeeecccccccchhHhhcce---eeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcC
Q 047050 15 FPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYV 91 (186)
Q Consensus 15 ~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 91 (186)
.|+.+..++.|+.|++++|.+. .+|..++.+.. |.+.++-...+|..+.++++|++|++++|.++. +|..|+.++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCC
Confidence 3556666777777777777765 33333322222 222211112444444444444444444444442 344444444
Q ss_pred CCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHh
Q 047050 92 NMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
+|++|++++|.++.....+.. +++|++|++++|.+++.+|..+
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~------l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGN------LCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTS------CTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCCCCCCccChhhhc------CCCccEEeCCCCccCCCChHHH
Confidence 444444444444321112222 4444444444444444444443
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=7.2e-18 Score=115.77 Aligned_cols=111 Identities=24% Similarity=0.236 Sum_probs=81.9
Q ss_pred CCCCCEEEccCCccC-CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 66 GCNLDFLRLNGNCLE-RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 66 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
.+++++|++++|.++ +.+|..+..+++|+.|++++|.+.+. +.+.. +++|++|++++|.+++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPK------LPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCC------CSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhcc------CCCCCEEECcCCcCchHHHHHHhhCC
Confidence 356888888888877 44677777788888888888887754 43434 77888888888888776777777788
Q ss_pred CCCEEEcCCCccccC-ccccccCCCCCceeeccCcccccc
Q 047050 145 SLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 145 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+|+.|++++|.+++. .+..++.+++|+.|++++|.+++.
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 888888888888742 126677788888888888887654
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=7.1e-18 Score=128.73 Aligned_cols=177 Identities=18% Similarity=0.151 Sum_probs=119.6
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccch-hHhhccee----ee-eceeeeecCcccccCCCCCEEEc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISN-WMWDMGVR----TF-TNNFHGRIPQTYVQGCNLDFLRL 74 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~l----~~-~~~~~~~~~~~~~~l~~L~~L~l 74 (186)
++.|+++.|.|...-+.+|+++++|+.|++++|.+.+.++. .+.++..+ .. .|.+....|..+..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 46789999999843345789999999999999998776654 44555433 22 56677667788889999999999
Q ss_pred cCCccCCcCchhhhhcCCCCEEEecC-cccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcC
Q 047050 75 NGNCLERPIPTSLIDYVNMNFLNVGN-NKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNIS 152 (186)
Q Consensus 75 ~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~ 152 (186)
++|.+....+..+....++..+++.+ +.+....+ .+... ...++.+++++|.++.. +.......+++.+++.
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~-----~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL-----SFESVILWLNKNGIQEI-HNSAFNGTQLDELNLS 185 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS-----BSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECT
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccchhhc-----chhhhhhccccccccCC-ChhhccccchhHHhhc
Confidence 99998875555566666777787765 34443222 22220 23567788888887763 3333345567777776
Q ss_pred C-CccccCcc-ccccCCCCCceeeccCccccccCC
Q 047050 153 H-NNLIGGIP-SSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 153 ~-n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+ |.++ .+| +.|+.+++|+.||+++|+++ .+|
T Consensus 186 ~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp 218 (350)
T 4ay9_X 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLP 218 (350)
T ss_dssp TCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCC
T ss_pred cCCccc-CCCHHHhccCcccchhhcCCCCcC-ccC
Confidence 5 4555 454 35677778888888888776 444
No 107
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.74 E-value=8.4e-18 Score=132.51 Aligned_cols=167 Identities=24% Similarity=0.349 Sum_probs=95.8
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
|+.++++.|.+. .+|. ++.+++|+.|++++|.+.+ +|+....++.+.+.++....+|.. .++|++|++++|+++
T Consensus 217 L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 217 LESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp CCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred ccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccC
Confidence 456777888777 7774 7888888999998888875 455556677777744333345543 256777777777776
Q ss_pred C--cCchhhh-------------hc-CCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 81 R--PIPTSLI-------------DY-VNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 81 ~--~~~~~~~-------------~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
+ ..|..+. .+ ++|+.|++++|++.+ +|. .+++|+++++++|.+++ +|. .++
T Consensus 291 ~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~--------~~~~L~~L~L~~N~l~~-lp~---~l~ 357 (454)
T 1jl5_A 291 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA--------LPPRLERLIASFNHLAE-VPE---LPQ 357 (454)
T ss_dssp EESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC--------CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred cccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc--------cCCcCCEEECCCCcccc-ccc---hhh
Confidence 5 1111110 11 244444554444443 221 15678888888888875 444 367
Q ss_pred CCCEEEcCCCcccc--CccccccCC-------------CCCceeeccCccccc--cCCC
Q 047050 145 SLKNSNISHNNLIG--GIPSSLRNL-------------TEFESLDLSLNKFVE--HIPT 186 (186)
Q Consensus 145 ~L~~L~l~~n~~~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~ip~ 186 (186)
+|+.|++++|.+++ .+|..++++ ++|+.|++++|++++ .||+
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 88999999998887 677787777 778999999998887 7763
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.2e-17 Score=117.16 Aligned_cols=131 Identities=21% Similarity=0.176 Sum_probs=101.7
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
.++++.+.+. ++|..+.. +++.|++++|.+.+..+. ..+..+++|++|++++|.+++.
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~-------------------~~~~~l~~L~~L~Ls~N~l~~~ 69 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSD-------------------GLFGRLPHLVKLELKRNQLTGI 69 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCS-------------------CSGGGCTTCCEEECCSSCCCCB
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCc-------------------cccccCCCCCEEECCCCCCCCc
Confidence 5678888886 88876643 999999999999742211 1367788888888888888886
Q ss_pred CchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIP 161 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 161 (186)
.|..|..+++|++|++++|++++..+. +.. +++|++|++++|.+++..|..+..+++|+.+++++|.+.+..+
T Consensus 70 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 70 EPNAFEGASHIQELQLGENKIKEISNKMFLG------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CTTTTTTCTTCCEEECCSCCCCEECSSSSTT------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CHhHcCCcccCCEEECCCCcCCccCHHHhcC------CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 677888888888888888888876653 444 7888888888888888778888888888888888888875433
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=115.41 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=99.9
Q ss_pred cEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCccccc
Q 047050 26 QLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSG 105 (186)
Q Consensus 26 ~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 105 (186)
+.++.++|.++ .+|..+. +++++|++++|.++. +|..|..+++|+.|++++|.+++
T Consensus 13 ~~l~~~~~~l~---------------------~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 13 TVVRCSNKGLK---------------------VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TEEECTTSCCS---------------------SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCCCC---------------------cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCE
Confidence 56788888776 4554443 478888898888885 77888888889999998888886
Q ss_pred CCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccc
Q 047050 106 PIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 106 ~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
..+ .+.+ +++|++|++++|.+++..+..|..+++|+.|++++|.++...+..|..+++|+.+++++|++..
T Consensus 69 i~~~~f~~------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 69 LSNQSFSN------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCTTTTTT------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred eCHhHccC------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 555 3444 7888889999998888777788888889999999998885555568888888999998888754
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.74 E-value=1.3e-19 Score=127.82 Aligned_cols=148 Identities=19% Similarity=0.180 Sum_probs=117.8
Q ss_pred eeeeeecCCccccCch------hhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEcc
Q 047050 2 VINWIQLQPLDCEFPD------VLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLN 75 (186)
Q Consensus 2 ~~~~l~~~~l~~~~p~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 75 (186)
+.+.++.+.+.+.+|+ .++.+++|+.|++++|.+. .+| .+.++++|++|+++
T Consensus 21 ~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---------------------~l~-~~~~l~~L~~L~l~ 78 (198)
T 1ds9_A 21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---------------------KIS-SLSGMENLRILSLG 78 (198)
T ss_dssp CCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---------------------CCC-CHHHHTTCCEEEEE
T ss_pred cCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---------------------ccc-ccccCCCCCEEECC
Confidence 3455666777777776 8889999999999999886 355 67788899999999
Q ss_pred CCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhh-HHhhccCCCCEEEcCCC
Q 047050 76 GNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKIL-EVVGKLNSLKNSNISHN 154 (186)
Q Consensus 76 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 154 (186)
+|.++. +|..+..+++|++|++++|.+++. |. ...+++|++|++++|.+++..+ ..+..+++|+.+++++|
T Consensus 79 ~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l-~~------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 79 RNLIKK-IENLDAVADTLEELWISYNQIASL-SG------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEEECS-CSSHHHHHHHCSEEEEEEEECCCH-HH------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCccc-ccchhhcCCcCCEEECcCCcCCcC-Cc------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 999986 788888889999999999998752 22 3337889999999999987433 57888999999999999
Q ss_pred ccccCccc----------cccCCCCCceeeccCcccc
Q 047050 155 NLIGGIPS----------SLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 155 ~~~~~~~~----------~~~~l~~L~~L~l~~n~l~ 181 (186)
.+.+.+|. .+..+++|+.|| ++.++
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99866554 278889999887 66664
No 111
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.8e-18 Score=130.99 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred CeeeeeecCCcccc-CchhhhcccCccEEEeeecccccccchhHhhc---ceeee-ec-eeee-ecCcccccCCCCCEEE
Q 047050 1 MVINWIQLQPLDCE-FPDVLKTQHQLQLLIISRNQIHGRISNWMWDM---GVRTF-TN-NFHG-RIPQTYVQGCNLDFLR 73 (186)
Q Consensus 1 l~~~~l~~~~l~~~-~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l---~~l~~-~~-~~~~-~~~~~~~~l~~L~~L~ 73 (186)
|+.++++.|.+.+. +|..+..+++|+.|++++|.+++..+..+..+ +.+.+ +| .+.+ .++..+..+++|++|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 56788888888866 88888999999999999999887777776554 44455 34 3444 3666678889999999
Q ss_pred ccCC-ccCCc-CchhhhhcC-CCCEEEecCcc--cc-cCCCCCCccchhhhcCcccEEeccCCc-cCchhhHHhhccCCC
Q 047050 74 LNGN-CLERP-IPTSLIDYV-NMNFLNVGNNK--LS-GPIPKCKNIQTERILTTSATIDLSSNR-FQEKILEVVGKLNSL 146 (186)
Q Consensus 74 l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~l~~L 146 (186)
+++| .++.. ++..+..++ +|++|++++|. ++ +.++ .....+++|++|++++|. +++..+..+..+++|
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-----TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-----HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-----HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 9999 88753 466688888 99999999984 33 1111 122347889999999998 676677788889999
Q ss_pred CEEEcCCCc-cccCccccccCCCCCceeeccCc
Q 047050 147 KNSNISHNN-LIGGIPSSLRNLTEFESLDLSLN 178 (186)
Q Consensus 147 ~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n 178 (186)
+.|++++|. +.......++++++|+.|++++|
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999999984 33222335788899999999988
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=3.2e-17 Score=113.45 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=100.4
Q ss_pred ccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccc
Q 047050 25 LQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLS 104 (186)
Q Consensus 25 L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 104 (186)
.+.++++++.+. .+|..+. +++++|++++|.+++..+..++.+++|++|++++|.++
T Consensus 9 ~~~l~~~~~~l~---------------------~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 9 GTEIRCNSKGLT---------------------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65 (177)
T ss_dssp TTEEECCSSCCS---------------------SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCEEEecCCCCc---------------------cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce
Confidence 467788887776 3444333 57888999988888755556788888999999988887
Q ss_pred cCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCcccccc
Q 047050 105 GPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 105 ~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
+..+. +.. +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.+.
T Consensus 66 ~~~~~~~~~------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 66 SLPDGVFDK------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EeChhHccC------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55443 334 78888999999988886667778888899999999988855555567888899999999888776
Q ss_pred CC
Q 047050 184 IP 185 (186)
Q Consensus 184 ip 185 (186)
.|
T Consensus 140 ~~ 141 (177)
T 2o6r_A 140 CP 141 (177)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.73 E-value=1.3e-17 Score=112.21 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=103.9
Q ss_pred cccCccEEEeeecccc-cccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEec
Q 047050 21 TQHQLQLLIISRNQIH-GRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVG 99 (186)
Q Consensus 21 ~l~~L~~L~l~~n~i~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 99 (186)
..++++.|++++|.+. + .+|..+..+++|++|++++|.++.. ..++.+++|++|+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~--------------------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEG--------------------KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72 (149)
T ss_dssp CGGGCSEEECTTCBCBTT--------------------BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECC
T ss_pred CCccCeEEEccCCcCChh--------------------HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECC
Confidence 3478899999999886 3 4566667888999999999998873 778888999999999
Q ss_pred CcccccCCCCCCccchhhhcCcccEEeccCCccCch-hhHHhhccCCCCEEEcCCCccccCcc---ccccCCCCCceeec
Q 047050 100 NNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-ILEVVGKLNSLKNSNISHNNLIGGIP---SSLRNLTEFESLDL 175 (186)
Q Consensus 100 ~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l 175 (186)
+|.+++.+|. ....+++|+++++++|.+++. .+..+..+++|+.+++++|.+++..+ ..++.+++|+.||+
T Consensus 73 ~n~i~~~~~~-----~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 73 DNRVSGGLEV-----LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp SSCCCSCTHH-----HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcccchHHH-----HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 9998865442 222378899999999999874 34788889999999999999985544 47888999999998
Q ss_pred cC
Q 047050 176 SL 177 (186)
Q Consensus 176 ~~ 177 (186)
++
T Consensus 148 ~d 149 (149)
T 2je0_A 148 YD 149 (149)
T ss_dssp BC
T ss_pred CC
Confidence 64
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.4e-17 Score=132.88 Aligned_cols=156 Identities=21% Similarity=0.302 Sum_probs=122.5
Q ss_pred CeeeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccC
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLE 80 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 80 (186)
++.++++.|.+.+ +|..+ .++|+.|++++|.++ .+|..+..++.+.+.++-...+|. +.+ +|++|++++|.++
T Consensus 61 L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~ 133 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLT 133 (571)
T ss_dssp CSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCS
T ss_pred ccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCC
Confidence 4578899999885 88766 388999999999998 556556677888774443344777 655 8999999999999
Q ss_pred CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCc
Q 047050 81 RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGI 160 (186)
Q Consensus 81 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 160 (186)
+ +|. .+++|+.|++++|.+++ +|. . +++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 134 ~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 134 M-LPE---LPALLEYINADNNQLTM-LPE--L------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSC-CCC--C------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred C-CCC---cCccccEEeCCCCccCc-CCC--c------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 8 666 67899999999999886 443 2 6889999999999988 565 54 89999999999998 77
Q ss_pred cccccCCCCC-------ceeeccCccccccCC
Q 047050 161 PSSLRNLTEF-------ESLDLSLNKFVEHIP 185 (186)
Q Consensus 161 ~~~~~~l~~L-------~~L~l~~n~l~~~ip 185 (186)
|. +.. +| +.|++++|.++ .||
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp 223 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIP 223 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCC
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecC
Confidence 77 554 67 99999999997 566
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-17 Score=121.33 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=122.6
Q ss_pred ccCchhhhcccCccEEEeeeccccccc-chhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcC
Q 047050 13 CEFPDVLKTQHQLQLLIISRNQIHGRI-SNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYV 91 (186)
Q Consensus 13 ~~~p~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 91 (186)
..+|. ..+.++..++++++.+++.. -..+..++.+.+.++-...++ .+..+++|++|++++|.+++ ++. +..++
T Consensus 11 ~~~pd--~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~ 85 (263)
T 1xeu_A 11 QVFPD--PGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLT 85 (263)
T ss_dssp HHCCS--HHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCS
T ss_pred HhCCC--HHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCC
Confidence 34444 25677888889999987654 245566777777555445566 78899999999999999998 555 89999
Q ss_pred CCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCc
Q 047050 92 NMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFE 171 (186)
Q Consensus 92 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 171 (186)
+|++|++++|++++. +... .++|++|++++|.+++. +.+..+++|+.|++++|.+++ ++ .++.+++|+
T Consensus 86 ~L~~L~L~~N~l~~l-~~~~-------~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~ 153 (263)
T 1xeu_A 86 KLEELSVNRNRLKNL-NGIP-------SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE 153 (263)
T ss_dssp SCCEEECCSSCCSCC-TTCC-------CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC
T ss_pred CCCEEECCCCccCCc-Cccc-------cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCC
Confidence 999999999999863 3221 27899999999999874 358889999999999999985 44 689999999
Q ss_pred eeeccCcccccc
Q 047050 172 SLDLSLNKFVEH 183 (186)
Q Consensus 172 ~L~l~~n~l~~~ 183 (186)
.|++++|.+++.
T Consensus 154 ~L~L~~N~i~~~ 165 (263)
T 1xeu_A 154 VLDLHGNEITNT 165 (263)
T ss_dssp EEECTTSCCCBC
T ss_pred EEECCCCcCcch
Confidence 999999999753
No 116
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.2e-17 Score=121.01 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=119.9
Q ss_pred hhcccCccEEEeeecccccccc-hhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEE
Q 047050 19 LKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFL 96 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 96 (186)
++.+++|+.|++++|.+..... ..+..++.+.+ +|.+. .++. +.++++|++|++++|.++. ++ .+..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 4678999999999999875421 22345566666 44444 4554 8899999999999999987 44 48899999999
Q ss_pred EecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeecc
Q 047050 97 NVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 97 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 176 (186)
++++|.+.+. +.+.. +++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ ++.+++|+.|+++
T Consensus 118 ~L~~n~i~~~-~~l~~------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 118 SLEHNGISDI-NGLVH------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp ECTTSCCCCC-GGGGG------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred ECCCCcCCCC-hhhcC------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 9999998853 33333 89999999999999875 678889999999999999985444 8999999999999
Q ss_pred Cccccc
Q 047050 177 LNKFVE 182 (186)
Q Consensus 177 ~n~l~~ 182 (186)
+|.+++
T Consensus 187 ~N~i~~ 192 (291)
T 1h6t_A 187 KNHISD 192 (291)
T ss_dssp SSCCCB
T ss_pred CCcCCC
Confidence 999874
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.9e-17 Score=111.46 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=98.1
Q ss_pred CCCCCEEEccCCccC-CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC
Q 047050 66 GCNLDFLRLNGNCLE-RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN 144 (186)
Q Consensus 66 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~ 144 (186)
.+++++|++++|.++ +.+|..+..+++|+.|++++|.+.+. +.+.. +++|++|++++|.+++.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~------l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK------LNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCC------CTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhc------CCCCCEEECCCCcccchHHHHhhhCC
Confidence 467999999999998 55888889999999999999999865 44444 89999999999999987888888899
Q ss_pred CCCEEEcCCCccccC-ccccccCCCCCceeeccCccccccCC
Q 047050 145 SLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 145 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+|+.|++++|.+++. .+..++.+++|++|++++|.+++..+
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999999999853 34789999999999999999986543
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=5.4e-17 Score=132.17 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=49.1
Q ss_pred cCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 119 LTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 119 ~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
+++|+.|++++|.++. +|. .+++|+.|++++|.++ .+|..++++++|+.|++++|++++.+|
T Consensus 240 l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 4667777777777765 343 4678888999999888 778889999999999999999887654
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=112.65 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=100.6
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
.++.+.+.+. ++|..+. ++|+.|++++|.++ .+|..+.++++|++|++++|.++..
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~---------------------~ip~~~~~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT---------------------LVPKELSNYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC---------------------SCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc---------------------hhHHHhhcccCCCEEECCCCcCCEe
Confidence 4567777877 7887653 68999999999987 4566777888888999998888886
Q ss_pred CchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCcccc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
.+..|..+++|+.|++++|.+++..+ .+.+ +++|++|++++|.++...+..+..+++|+.+++++|.+..
T Consensus 70 ~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDG------LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CHhHccCCCCCCEEECCCCccCEeCHHHhCC------CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66778888889999999888887665 3444 7888889999998887666678888888899998888763
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=5.5e-18 Score=133.30 Aligned_cols=180 Identities=12% Similarity=0.065 Sum_probs=99.7
Q ss_pred eeeeeecCCcccc----CchhhhcccCccEEEeeecccccccchh--------Hhhcceeee-eceeeee----cCcccc
Q 047050 2 VINWIQLQPLDCE----FPDVLKTQHQLQLLIISRNQIHGRISNW--------MWDMGVRTF-TNNFHGR----IPQTYV 64 (186)
Q Consensus 2 ~~~~l~~~~l~~~----~p~~~~~l~~L~~L~l~~n~i~~~~~~~--------~~~l~~l~~-~~~~~~~----~~~~~~ 64 (186)
+.++++.|.+.+. ++..+..+++|+.|++++|.+.+..... ...++.+.+ +|.+.+. ++..+.
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 3445555555442 3455555555555555555554322111 112333333 2322221 344444
Q ss_pred cCCCCCEEEccCCccCCcCchhhhhc-----CCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHH
Q 047050 65 QGCNLDFLRLNGNCLERPIPTSLIDY-----VNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEV 139 (186)
Q Consensus 65 ~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 139 (186)
++++|++|++++|.++...+..+... ++|+.|++++|.+++..... -......+++|++|++++|.+++..+..
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-FSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-HHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH-HHHHHhhCCCccEEEccCCccccccHHH
Confidence 55556666665555543223333322 45566666655554321000 0012233578888899888887655554
Q ss_pred hhc-----cCCCCEEEcCCCcccc----CccccccCCCCCceeeccCccccc
Q 047050 140 VGK-----LNSLKNSNISHNNLIG----GIPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 140 ~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
+.. .++|+.|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 443 5688899999998875 677778888899999999988764
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=8e-17 Score=130.86 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=125.1
Q ss_pred eecCCccccCchhhhcccCccEEEeeecccccccc-hhHhhcceeee-eceeeeecCcccccCCCCCEEEccCCccCCcC
Q 047050 6 IQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRIS-NWMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI 83 (186)
Q Consensus 6 l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 83 (186)
+..+.+....+ +..+++|+.|++++|.+..... ..+..++.|.+ .|.+.+ +++ +..+++|+.|++++|.+.. +
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l 102 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-L 102 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-C
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-C
Confidence 34444554433 5788999999999999875421 22344556666 444444 444 8899999999999999987 4
Q ss_pred chhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcccc
Q 047050 84 PTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSS 163 (186)
Q Consensus 84 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 163 (186)
+ .+..+++|+.|++++|.+.+. +.+.. +++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNGISDI-NGLVH------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp T-TSTTCTTCCEEECTTSCCCCC-GGGGG------CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred h-hhccCCCCCEEEecCCCCCCC-ccccC------CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 4 788999999999999998853 33334 89999999999999885 678889999999999999996555
Q ss_pred ccCCCCCceeeccCccccc
Q 047050 164 LRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 164 ~~~l~~L~~L~l~~n~l~~ 182 (186)
+..+++|+.|++++|.+++
T Consensus 171 l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB
T ss_pred hccCCCCCEEECcCCCCCC
Confidence 8999999999999999874
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=5.6e-17 Score=134.43 Aligned_cols=118 Identities=21% Similarity=0.254 Sum_probs=83.1
Q ss_pred ecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchh
Q 047050 58 RIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKI 136 (186)
Q Consensus 58 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 136 (186)
..+..+..++.|+.|++++|.+.. +|..+..+++|++|++++|.++ .+| .+.. +++|++|+|++|.++ .+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------l~~L~~L~Ls~N~l~-~l 285 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKN------LSNLRVLDLSHNRLT-SL 285 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG------GTTCCEEECTTSCCS-SC
T ss_pred cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhC------CCCCCEEeCcCCcCC-cc
Confidence 445667777778888888888775 6766677778888888888777 444 3333 777888888888877 46
Q ss_pred hHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 137 LEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 137 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
|..++.+++|+.|++++|.++ .+|..|+.+++|+.|++++|.++|.+|
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 777777888888888888776 677777788888888888888776654
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=7.7e-18 Score=132.48 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=64.5
Q ss_pred CeeeeeecCCccc----cCchhhhcccCccEEEeeecccccccchhHhh--------cceeee-eceeeee----cCccc
Q 047050 1 MVINWIQLQPLDC----EFPDVLKTQHQLQLLIISRNQIHGRISNWMWD--------MGVRTF-TNNFHGR----IPQTY 63 (186)
Q Consensus 1 l~~~~l~~~~l~~----~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~--------l~~l~~-~~~~~~~----~~~~~ 63 (186)
|+.++++.|.+.. .+|..++.+++|+.|++++|.+.+..+..+.. ++.+.+ +|.+.+. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4567788888773 56777888888888888888876554444332 555555 4444332 34455
Q ss_pred ccCCCCCEEEccCCccCCcCchhhhh-----cCCCCEEEecCccccc
Q 047050 64 VQGCNLDFLRLNGNCLERPIPTSLID-----YVNMNFLNVGNNKLSG 105 (186)
Q Consensus 64 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~ 105 (186)
..+++|++|++++|.++...+..+.. .++|+.|++++|.+++
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 55677777777777765433333322 3466667766666553
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=8.6e-17 Score=111.29 Aligned_cols=133 Identities=16% Similarity=0.145 Sum_probs=105.0
Q ss_pred hhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccC-CCCCEEEccCCccCCcCchhhhhcCCCCEE
Q 047050 18 VLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQG-CNLDFLRLNGNCLERPIPTSLIDYVNMNFL 96 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 96 (186)
.+.++.+|+.|++++|.+.. ++. +..+ ++|++|++++|.+++ + ..++.+++|++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~---------------------i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L 69 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV---------------------IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTL 69 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS---------------------CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEE
T ss_pred hcCCcCCceEEEeeCCCCch---------------------hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEE
Confidence 45678999999999999872 332 3444 489999999999987 3 678888999999
Q ss_pred EecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhH--HhhccCCCCEEEcCCCccccCcccc----ccCCCCC
Q 047050 97 NVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILE--VVGKLNSLKNSNISHNNLIGGIPSS----LRNLTEF 170 (186)
Q Consensus 97 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L 170 (186)
++++|.+++..+.+ +..+++|++|++++|.+.. +|. .+..+++|+.+++++|.+. .+|.. ++.+++|
T Consensus 70 ~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 70 LVNNNRICRIGEGL-----DQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp ECCSSCCCEECSCH-----HHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred ECCCCcccccCcch-----hhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 99999988654432 2237899999999999965 454 7888899999999999998 56664 8889999
Q ss_pred ceeeccCcccc
Q 047050 171 ESLDLSLNKFV 181 (186)
Q Consensus 171 ~~L~l~~n~l~ 181 (186)
+.+|++.|...
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 99999988653
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=1.4e-15 Score=123.83 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=36.1
Q ss_pred CcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccccccCC
Q 047050 120 TTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFVEHIP 185 (186)
Q Consensus 120 ~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ip 185 (186)
++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .||
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence 556666666666655 33 34566777777777766 4554 4566777777777776 555
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=9.8e-16 Score=105.95 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=103.2
Q ss_pred eeeeecCCccccCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 3 INWIQLQPLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 3 ~~~l~~~~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
.++++.+.+. .+|..+ .++|+.|++++|.+++ ..+..+..+++|++|++++|.++..
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~--------------------~~~~~~~~l~~L~~L~l~~n~l~~~ 67 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQS--------------------LPHGVFDKLTQLTKLSLSQNQIQSL 67 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCC--------------------CCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccE--------------------eCHHHhcCcccccEEECCCCcceEe
Confidence 4567777777 677554 3799999999999873 2233457788999999999999885
Q ss_pred CchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIP 161 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 161 (186)
.+..++.+++|+.|++++|.+++..+. +.. +++|+++++++|.+++..+..+..+++|+.+++++|.+.+..+
T Consensus 68 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 68 PDGVFDKLTKLTILYLHENKLQSLPNGVFDK------LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ChhHccCCCccCEEECCCCCccccCHHHhhC------CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 556678899999999999999866553 334 7899999999999988666667889999999999999886554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.7e-17 Score=133.96 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=121.5
Q ss_pred ccccCchhhhcccCccEEE-eeecccccccc--------h--hHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 11 LDCEFPDVLKTQHQLQLLI-ISRNQIHGRIS--------N--WMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 11 l~~~~p~~~~~l~~L~~L~-l~~n~i~~~~~--------~--~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
..+..|+.++.+++|+.|+ ++.|.+..... . ....++.+.+.++-...+|. +..+++|++|++++|.+
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC
T ss_pred cccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccc
Confidence 5667788888899998888 66664431110 0 01135566674444445776 99999999999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchh-hHHhhccCCCCEEEcCCCcccc
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKI-LEVVGKLNSLKNSNISHNNLIG 158 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~ 158 (186)
+. +|..++.+++|+.|++++|.+++ +|.+.. +++|+.|++++|.+++.. |..++.+++|+.|++++|.+++
T Consensus 476 ~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 476 RA-LPPALAALRCLEVLQASDNALEN-VDGVAN------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CC-CCGGGGGCTTCCEEECCSSCCCC-CGGGTT------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred cc-cchhhhcCCCCCEEECCCCCCCC-CcccCC------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 95 89999999999999999999986 455555 899999999999999876 9999999999999999999996
Q ss_pred Cccc---cccCCCCCceeec
Q 047050 159 GIPS---SLRNLTEFESLDL 175 (186)
Q Consensus 159 ~~~~---~~~~l~~L~~L~l 175 (186)
..|. .+..+++|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 5442 2344788888864
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=2.2e-15 Score=104.15 Aligned_cols=128 Identities=15% Similarity=0.048 Sum_probs=102.3
Q ss_pred CeeeeeecCCccccCchhhhcc-cCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCcc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQ-HQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCL 79 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 79 (186)
|+.+++++|.+. .+|. +..+ ++|+.|++++|.+++ + ..+..+++|++|++++|.+
T Consensus 21 L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~---------------------~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 21 DRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK---------------------L-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp CEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE---------------------E-CCCCCCSSCCEEECCSSCC
T ss_pred ceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc---------------------c-cccccCCCCCEEECCCCcc
Confidence 578899999998 5665 4555 499999999999973 2 4677899999999999999
Q ss_pred CCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhH----HhhccCCCCEEEcCCCc
Q 047050 80 ERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILE----VVGKLNSLKNSNISHNN 155 (186)
Q Consensus 80 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~ 155 (186)
+...+..+..+++|++|++++|.+....+ ......+++|+++++++|.+.. .|. .+..+++|+.++++.|.
T Consensus 77 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 77 CRIGEGLDQALPDLTELILTNNSLVELGD----LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEECSCHHHHCTTCCEEECCSCCCCCGGG----GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred cccCcchhhcCCCCCEEECCCCcCCcchh----hHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 98444556899999999999999864322 1123338899999999999976 444 48889999999999998
Q ss_pred cc
Q 047050 156 LI 157 (186)
Q Consensus 156 ~~ 157 (186)
..
T Consensus 152 ~~ 153 (176)
T 1a9n_A 152 LK 153 (176)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1e-17 Score=118.08 Aligned_cols=142 Identities=21% Similarity=0.269 Sum_probs=114.1
Q ss_pred hhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEe
Q 047050 19 LKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNV 98 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 98 (186)
+.....++.++++.+.+.+..|. ...+|..+..+++|++|++++|.++. +| .+..+++|++|++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~--------------l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l 77 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP--------------IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSL 77 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT--------------CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEE
T ss_pred HHhcccccCcchheeEeccccCc--------------HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEEC
Confidence 55667777788888887764442 11445578889999999999999998 77 8999999999999
Q ss_pred cCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCcc--ccccCCCCCceeecc
Q 047050 99 GNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIP--SSLRNLTEFESLDLS 176 (186)
Q Consensus 99 ~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~ 176 (186)
++|.+.. +|. ....+++|++|++++|.+++ +| .+..+++|+.|++++|.+++ ++ ..+..+++|++++++
T Consensus 78 ~~n~l~~-l~~-----~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 78 GRNLIKK-IEN-----LDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EEEEECS-CSS-----HHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEEC
T ss_pred CCCCccc-ccc-----hhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEec
Confidence 9999984 342 22226899999999999988 45 68889999999999999984 33 478999999999999
Q ss_pred CccccccCC
Q 047050 177 LNKFVEHIP 185 (186)
Q Consensus 177 ~n~l~~~ip 185 (186)
+|++.+.+|
T Consensus 149 ~N~l~~~~~ 157 (198)
T 1ds9_A 149 GNPLYNDYK 157 (198)
T ss_dssp SCHHHHHHH
T ss_pred CCccccccc
Confidence 999876543
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=7.2e-15 Score=101.09 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=45.4
Q ss_pred CEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCE
Q 047050 70 DFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKN 148 (186)
Q Consensus 70 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~ 148 (186)
+++++++|.++. +|..+ .++++.|++++|.+++..+ .+.+ +++|++|++++|++++..+..|..+++|+.
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDR------LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTT------CTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcC------cccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 344444444443 33332 1344444444444443333 1222 444444444444444433334444444455
Q ss_pred EEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 149 SNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 149 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555544444333333444444455555544443
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.9e-14 Score=98.41 Aligned_cols=93 Identities=23% Similarity=0.250 Sum_probs=53.3
Q ss_pred eecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCch
Q 047050 57 GRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEK 135 (186)
Q Consensus 57 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~ 135 (186)
+.+|..+. +++++|++++|.+++..|..|+.+++|++|++++|++++..+. +.. +++|++|++++|.+++.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~------l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK------LTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------CTTCCEEECCSSCCCCC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC------cchhhEEECCCCcccee
Confidence 44554443 4566666666666664455566666666666666666544332 223 55666666666666554
Q ss_pred hhHHhhccCCCCEEEcCCCccc
Q 047050 136 ILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 136 ~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
.+..+..+++|+.|++++|.+.
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBC
T ss_pred CHHHhccccCCCEEEeCCCCcc
Confidence 4444555666666666666655
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3.8e-14 Score=108.07 Aligned_cols=155 Identities=14% Similarity=0.050 Sum_probs=98.1
Q ss_pred CeeeeeecCCccccCc-hhhhcccCccE-EEeeecccccccchhHhhc---ceeee-eceeeeecCcccccCCCCCEEEc
Q 047050 1 MVINWIQLQPLDCEFP-DVLKTQHQLQL-LIISRNQIHGRISNWMWDM---GVRTF-TNNFHGRIPQTYVQGCNLDFLRL 74 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p-~~~~~l~~L~~-L~l~~n~i~~~~~~~~~~l---~~l~~-~~~~~~~~~~~~~~l~~L~~L~l 74 (186)
|+.+++++|.+.+.+| .+|.++++++. +.+..|.+....|+.+..+ +.+.+ .|.+....+..+....++..+++
T Consensus 56 L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 5678888888876666 45678887775 4566678876666665544 44444 34444333444555666777777
Q ss_pred cC-CccCCcCchhhhhcC-CCCEEEecCcccccCCCCCCccchhhhcCcccEEeccC-CccCchhhHHhhccCCCCEEEc
Q 047050 75 NG-NCLERPIPTSLIDYV-NMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSS-NRFQEKILEVVGKLNSLKNSNI 151 (186)
Q Consensus 75 ~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~l~~L~~L~l 151 (186)
.+ +.+....+..|..+. .++.|++++|+++...+.... ..+++++++++ |.++...++.|..+++|+.|++
T Consensus 136 ~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred ccccccccccccchhhcchhhhhhccccccccCCChhhcc------ccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 55 456653334455553 577788888887754444333 45677777764 5555544456677778888888
Q ss_pred CCCccccCccc
Q 047050 152 SHNNLIGGIPS 162 (186)
Q Consensus 152 ~~n~~~~~~~~ 162 (186)
++|.++ .+|.
T Consensus 210 s~N~l~-~lp~ 219 (350)
T 4ay9_X 210 SRTRIH-SLPS 219 (350)
T ss_dssp TTSCCC-CCCS
T ss_pred CCCCcC-ccCh
Confidence 888777 4443
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=5.8e-14 Score=96.54 Aligned_cols=107 Identities=17% Similarity=0.155 Sum_probs=85.0
Q ss_pred CccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCccc
Q 047050 24 QLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKL 103 (186)
Q Consensus 24 ~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 103 (186)
..+.+++++|.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|++
T Consensus 10 ~~~~l~~s~n~l~---------------------~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 10 SGTTVDCSGKSLA---------------------SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66 (170)
T ss_dssp ETTEEECTTSCCS---------------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred CCCEEEeCCCCcC---------------------ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc
Confidence 3578888888886 4555443 5788999999999886677788899999999999998
Q ss_pred ccCCCC-CCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccC
Q 047050 104 SGPIPK-CKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGG 159 (186)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 159 (186)
++..+. +.. +++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 67 ~~l~~~~f~~------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 67 TVLPAGVFDK------LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCTTTTTT------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccChhhccC------CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 866553 334 78899999999999886667788889999999999988744
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=7.3e-14 Score=96.41 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=62.6
Q ss_pred cEEEeeecccccccch-hHhhcceeee-eceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCccc
Q 047050 26 QLLIISRNQIHGRISN-WMWDMGVRTF-TNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKL 103 (186)
Q Consensus 26 ~~L~l~~n~i~~~~~~-~~~~l~~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 103 (186)
+.+++++|.+.. +|. ....++.+.+ +|.+.+..|..+.++++|++|++++|+++...+..|..+++|++|++++|++
T Consensus 15 ~~l~~~~n~l~~-iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSS-CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCc-cCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 566777776643 333 2345566666 4444444456667777777777777777763333456677777777777777
Q ss_pred ccCCCC-CCccchhhhcCcccEEeccCCccCc
Q 047050 104 SGPIPK-CKNIQTERILTTSATIDLSSNRFQE 134 (186)
Q Consensus 104 ~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~ 134 (186)
.+..+. +.. +++|+++++++|.+..
T Consensus 94 ~~l~~~~~~~------l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 94 KSIPRGAFDN------LKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCTTTTTT------CTTCSEEECCSSCBCT
T ss_pred ceeCHHHhcc------ccCCCEEEeCCCCccc
Confidence 654442 333 6677777777777654
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=6.4e-15 Score=113.29 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=24.8
Q ss_pred CeeeeeecCCccccCchhhhcc-----cCccEEEeeeccccc
Q 047050 1 MVINWIQLQPLDCEFPDVLKTQ-----HQLQLLIISRNQIHG 37 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~~l-----~~L~~L~l~~n~i~~ 37 (186)
|+.++++.|.++..-...++.. ++|+.|++++|.++.
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~ 115 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP 115 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH
Confidence 3567777777776555555444 678888888887754
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.39 E-value=1.3e-12 Score=99.34 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=50.8
Q ss_pred ecCcccccCCCCCEEEccC-CccCCcCchhhhhcCCCCEEEecCcccccCCCC-CCccchhhhcCcccEEeccCCccCch
Q 047050 58 RIPQTYVQGCNLDFLRLNG-NCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPK-CKNIQTERILTTSATIDLSSNRFQEK 135 (186)
Q Consensus 58 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~~ 135 (186)
.+|. +..+++|++|++++ |.++...+..|+.+++|+.|++++|++++..|. +.. +++|++|+|++|++++.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF------TPRLSRLNLSFNALESL 95 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGS------CSCCCEEECCSSCCSCC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcC------CcCCCEEeCCCCcccee
Confidence 3555 55566666666664 666654445566666666666666666554442 223 55666666666666554
Q ss_pred hhHHhhccCCCCEEEcCCCccc
Q 047050 136 ILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 136 ~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
.+..+..+. |+.|++.+|.+.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSCCC
T ss_pred CHHHcccCC-ceEEEeeCCCcc
Confidence 333333333 666666666555
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=2.3e-13 Score=110.05 Aligned_cols=182 Identities=9% Similarity=0.022 Sum_probs=104.7
Q ss_pred CeeeeeecCCccccCc-hhhhcccCccEEEeeeccccc-ccchh---Hhhcceeeeec------------eeeee-cCcc
Q 047050 1 MVINWIQLQPLDCEFP-DVLKTQHQLQLLIISRNQIHG-RISNW---MWDMGVRTFTN------------NFHGR-IPQT 62 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p-~~~~~l~~L~~L~l~~n~i~~-~~~~~---~~~l~~l~~~~------------~~~~~-~~~~ 62 (186)
|+.+++++|.+.+... ..++.+++|+.|+++ +.+.. .++.. +..++.+.+.+ .+.+. ++..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 4567777777655444 335677777777777 33322 22222 23344455442 22221 1111
Q ss_pred cccCCCCCEEEccCCccCCcCchhhhh-cCCCCEEEec----CcccccC------------CCCCCcc------------
Q 047050 63 YVQGCNLDFLRLNGNCLERPIPTSLID-YVNMNFLNVG----NNKLSGP------------IPKCKNI------------ 113 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~~~~~------------~~~~~~~------------ 113 (186)
...+++|++|++..+.+++..+..++. +++|+.|+++ .|.+++. .+....+
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 233556666666555555444444443 5556666664 3333321 0000000
Q ss_pred ---chhhhcCcccEEeccCCccCc-hhhHHhhccCCCCEEEcCCCccccC-ccccccCCCCCceeeccCcccccc
Q 047050 114 ---QTERILTTSATIDLSSNRFQE-KILEVVGKLNSLKNSNISHNNLIGG-IPSSLRNLTEFESLDLSLNKFVEH 183 (186)
Q Consensus 114 ---~~~~~~~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 183 (186)
.....+++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|++++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 011236789999999999876 3456667889999999999998744 444456788999999999988753
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.9e-12 Score=97.38 Aligned_cols=102 Identities=18% Similarity=0.074 Sum_probs=83.4
Q ss_pred eeecC-CccccCchhhhcccCccEEEeee-cccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc
Q 047050 5 WIQLQ-PLDCEFPDVLKTQHQLQLLIISR-NQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP 82 (186)
Q Consensus 5 ~l~~~-~l~~~~p~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 82 (186)
+.+.+ .+. .+|+ +..+++|+.|++++ |.+.+ ..+..|.++++|++|++++|++++.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~--------------------~~~~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQH--------------------LELRDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCE--------------------ECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCC--------------------cChhHhccccCCCEEECCCCcccee
Confidence 45555 677 6898 99999999999996 99873 3345678899999999999999997
Q ss_pred CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCc
Q 047050 83 IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQE 134 (186)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~ 134 (186)
.|..|..+++|+.|++++|++++..+.... ...|+.|++.+|.+..
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQ------GLSLQELVLSGNPLHC 117 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTC------SCCCCEEECCSSCCCC
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcc------cCCceEEEeeCCCccC
Confidence 777899999999999999999876654333 2349999999999874
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.29 E-value=2.1e-12 Score=104.48 Aligned_cols=129 Identities=9% Similarity=0.051 Sum_probs=78.3
Q ss_pred cccCccEEEeeecccccccchhHh----h-cceeeeecee--ee-ecCcccccCCCCCEEEccCCccCCc----Cchhhh
Q 047050 21 TQHQLQLLIISRNQIHGRISNWMW----D-MGVRTFTNNF--HG-RIPQTYVQGCNLDFLRLNGNCLERP----IPTSLI 88 (186)
Q Consensus 21 ~l~~L~~L~l~~n~i~~~~~~~~~----~-l~~l~~~~~~--~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~ 88 (186)
.+++|+.|++++|.+++..+.++. . ++.|.+.+.- .. .++....++++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 678888888888887765555443 2 5666663221 11 1223334677888888888877653 233455
Q ss_pred hcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcC
Q 047050 89 DYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNIS 152 (186)
Q Consensus 89 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~ 152 (186)
.+++|+.|++++|.+++... .+ ......+++|+.|++++|.+.+ ++..+..+++|+.++++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l--~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDL--ETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHH--HHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHH--HHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 67788888888777652111 00 0122336777777777777655 55666666666666665
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.6e-11 Score=90.81 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=66.2
Q ss_pred CCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCccc-EEeccCCccCchhhHHhhcc
Q 047050 66 GCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSA-TIDLSSNRFQEKILEVVGKL 143 (186)
Q Consensus 66 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~l 143 (186)
+++|+++++++|.++......|..+.+|+.+++..| +....+ .+.+ +.+|+ .+.+.. .++...+..|..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~------~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSN------CGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT------CTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhC------ChhccEEEEEcc-cceEEchhhhhCC
Confidence 567777777777777644455777777777777776 432222 2333 66777 777776 5655556677777
Q ss_pred CCCCEEEcCCCccccCccccccCCCCCceee
Q 047050 144 NSLKNSNISHNNLIGGIPSSLRNLTEFESLD 174 (186)
Q Consensus 144 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 174 (186)
++|+.+++..|.++..-+.+|.++++|+.+.
T Consensus 297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777777777777644455677777777664
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=4.2e-12 Score=102.64 Aligned_cols=180 Identities=10% Similarity=-0.011 Sum_probs=94.9
Q ss_pred CeeeeeecCCccccCch-hhhcccCccEEEeeecccccc-cch---hHhhcceeeeec----------eeeeecCccc-c
Q 047050 1 MVINWIQLQPLDCEFPD-VLKTQHQLQLLIISRNQIHGR-ISN---WMWDMGVRTFTN----------NFHGRIPQTY-V 64 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~-~~~~l~~L~~L~l~~n~i~~~-~~~---~~~~l~~l~~~~----------~~~~~~~~~~-~ 64 (186)
|+.+++++|.+.+.... .+..+++|+.|++++| +... ++. .+..++.+.+.. .+.+.....+ .
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 45667777776544332 3456777777777776 3221 111 122344443311 1211111111 1
Q ss_pred cCCCCCEEEccCCccCCcCchhhh-hcCCCCEEEec--C----cccccCC------------CCCCc-----------cc
Q 047050 65 QGCNLDFLRLNGNCLERPIPTSLI-DYVNMNFLNVG--N----NKLSGPI------------PKCKN-----------IQ 114 (186)
Q Consensus 65 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~------------~~~~~-----------~~ 114 (186)
.+++|++|.+..+.++......+. .+++|+.|+++ + +.++... +.... ..
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~ 449 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE 449 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence 255566665555555543333333 35666666666 2 2222100 00000 00
Q ss_pred -hhhhcCcccEEeccCCccCchhhHHh-hccCCCCEEEcCCCccccCccc-cccCCCCCceeeccCcccc
Q 047050 115 -TERILTTSATIDLSSNRFQEKILEVV-GKLNSLKNSNISHNNLIGGIPS-SLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 115 -~~~~~~~L~~l~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~ 181 (186)
....+++|++|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 11126678888888888766544444 5678888888888887643333 3455788888888888764
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=4.2e-12 Score=97.62 Aligned_cols=164 Identities=14% Similarity=0.050 Sum_probs=108.4
Q ss_pred CeeeeeecCCccccCchhhh-cccCccEEEeeecccccccchhHhhcceeeeeceeeeecCccc-ccCCCCCEEEccCCc
Q 047050 1 MVINWIQLQPLDCEFPDVLK-TQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTY-VQGCNLDFLRLNGNC 78 (186)
Q Consensus 1 l~~~~l~~~~l~~~~p~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~ 78 (186)
|+.++++.|.+..+-...+. .+++|+.|++++|.++......+.. .+ ...++|++|++++|.
T Consensus 103 L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~----------------~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 103 LDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD----------------LLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp EEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH----------------HHHSTTCCCCEEECCSSC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH----------------HHHhcCCccceeeCCCCC
Confidence 46789999999766555543 4689999999999997544443322 22 235689999999999
Q ss_pred cCCc----CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch----hhHHhhccCCCCEEE
Q 047050 79 LERP----IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK----ILEVVGKLNSLKNSN 150 (186)
Q Consensus 79 l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~ 150 (186)
++.. ++..+..+++|++|++++|.+.+...... .......++|++|++++|.+++. ++..+...++|+.|+
T Consensus 167 l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L-~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 167 LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL-AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH-HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH-HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 8652 33445678899999999999864211000 01223367899999999999753 445555678999999
Q ss_pred cCCCccccCccccccCCC-----CCceee--ccCcccc
Q 047050 151 ISHNNLIGGIPSSLRNLT-----EFESLD--LSLNKFV 181 (186)
Q Consensus 151 l~~n~~~~~~~~~~~~l~-----~L~~L~--l~~n~l~ 181 (186)
+++|.++..-...+.... .++.+. +..+.++
T Consensus 246 Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 246 LYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred ccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 999999855444443332 155665 5555443
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=5.1e-11 Score=89.96 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=65.3
Q ss_pred cCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCC-EEEcCCCccccCccccccCC
Q 047050 90 YVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLK-NSNISHNNLIGGIPSSLRNL 167 (186)
Q Consensus 90 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l 167 (186)
+++|+.+++++|.+..... .+.+ +.+|+.+++..| ++...+..|..+.+|+ .+++.. .++..-+.+|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~------~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQ------KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhC------CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence 6788888888887764333 3334 788999999887 7776677888899998 999888 5664556789999
Q ss_pred CCCceeeccCcccc
Q 047050 168 TEFESLDLSLNKFV 181 (186)
Q Consensus 168 ~~L~~L~l~~n~l~ 181 (186)
++|+.++++.|.++
T Consensus 297 ~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 297 DNLRYVLATGDKIT 310 (329)
T ss_dssp TTEEEEEECSSCCC
T ss_pred ccCCEEEeCCCccC
Confidence 99999999888765
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=1.4e-10 Score=93.79 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred hhcccCccEEEeeecccccccchhH----hhcceeeee-c-eeeee-cCcccccCCCCCEEEccCCccCCcCchhhh---
Q 047050 19 LKTQHQLQLLIISRNQIHGRISNWM----WDMGVRTFT-N-NFHGR-IPQTYVQGCNLDFLRLNGNCLERPIPTSLI--- 88 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n~i~~~~~~~~----~~l~~l~~~-~-~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--- 88 (186)
...+++|+.|++++|.+++..+..+ ..++.+.+. + .+.+. ++....++++|++|++++|.++...+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 3456777777777777665444433 344555553 2 22221 333344667777777777776543333333
Q ss_pred -hcCCCCEEEecCcc
Q 047050 89 -DYVNMNFLNVGNNK 102 (186)
Q Consensus 89 -~l~~L~~L~l~~n~ 102 (186)
.+++|+.|++++|.
T Consensus 181 ~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA 195 (594)
T ss_dssp TTCCCCCEEECTTCC
T ss_pred hcCCcCcEEEecccC
Confidence 44567777777665
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.2e-09 Score=83.55 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=96.8
Q ss_pred chhhhcccCccEEEeeecccc---------cccchh---HhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcC
Q 047050 16 PDVLKTQHQLQLLIISRNQIH---------GRISNW---MWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI 83 (186)
Q Consensus 16 p~~~~~l~~L~~L~l~~n~i~---------~~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 83 (186)
.+++..+++|+.|.+...... +.+... +..++.|.+.......++. + .+++|+.|++..|.+....
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHH
Confidence 344556777777777554221 112222 2345555553332112333 3 3778999999888776533
Q ss_pred chhhh--hcCCCCEEEecC--cccccC--CCCCCccchhhhcCcccEEeccCCccCchhhHHhh---ccCCCCEEEcCCC
Q 047050 84 PTSLI--DYVNMNFLNVGN--NKLSGP--IPKCKNIQTERILTTSATIDLSSNRFQEKILEVVG---KLNSLKNSNISHN 154 (186)
Q Consensus 84 ~~~~~--~l~~L~~L~l~~--n~~~~~--~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n 154 (186)
...+. .+++|+.|+++. +...+. +..+...-....+++|++|++.+|.+....+..+. .++.|+.|+++.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 34444 578899998853 221111 00110000012368899999999888654443333 4678999999998
Q ss_pred ccccC----ccccccCCCCCceeeccCccccc
Q 047050 155 NLIGG----IPSSLRNLTEFESLDLSLNKFVE 182 (186)
Q Consensus 155 ~~~~~----~~~~~~~l~~L~~L~l~~n~l~~ 182 (186)
.+.+. ++..+..+++|+.|+++.|.++.
T Consensus 290 ~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 88753 34445667889999999988753
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=3.4e-09 Score=73.60 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred hhhcccCccEEEeeec-ccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCcC----chhhhhcCC
Q 047050 18 VLKTQHQLQLLIISRN-QIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPI----PTSLIDYVN 92 (186)
Q Consensus 18 ~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~ 92 (186)
.+...+.|+.|++++| .+....... +...+...++|++|++++|.++... ...+...++
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~----------------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~ 94 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKA----------------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNT 94 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHH----------------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHH----------------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCC
Confidence 3455666666666666 654322221 2223344556666666666665321 223333455
Q ss_pred CCEEEecCcccc
Q 047050 93 MNFLNVGNNKLS 104 (186)
Q Consensus 93 L~~L~l~~n~~~ 104 (186)
|++|++++|.+.
T Consensus 95 L~~L~L~~N~i~ 106 (185)
T 1io0_A 95 LKSLNVESNFIS 106 (185)
T ss_dssp CCEEECCSSCCC
T ss_pred cCEEECcCCcCC
Confidence 666666666554
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.82 E-value=3.6e-08 Score=76.46 Aligned_cols=169 Identities=8% Similarity=0.006 Sum_probs=94.8
Q ss_pred CccccCchhhhcccCccEEEeeecccccccchhHh--hcceeeeeceeeeecCcccccCCCCCEEEccCC----------
Q 047050 10 PLDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMW--DMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGN---------- 77 (186)
Q Consensus 10 ~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~--~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n---------- 77 (186)
.+...-+.+|.++++|+.+++.+|.+.......+. .++.+.+.+.+...-..+|.++++|+.+++..+
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~ 246 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFR 246 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCCccCccccccc
Confidence 34434446788888888888888777643333332 222233333333333344555555555555432
Q ss_pred -----------ccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCC
Q 047050 78 -----------CLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSL 146 (186)
Q Consensus 78 -----------~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L 146 (186)
.++......|..+++|+.+.+.++.+............+..+.+|+.+.+. +.++..-...|..+.+|
T Consensus 247 ~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 247 ESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV 325 (401)
T ss_dssp TCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC
T ss_pred cCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc
Confidence 233222345666777777777666543100000011123336777777777 34665556677777888
Q ss_pred CEEEcCCCccccCccccccCCCCCceeeccCcccc
Q 047050 147 KNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 147 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
+.+.+..+ ++..-..+|.++ +|+.+++.+|.+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 88888555 443445567777 8888888877653
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=2.1e-09 Score=74.67 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=89.0
Q ss_pred CcccccCCCCCEEEccCC-ccCCc----CchhhhhcCCCCEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccC
Q 047050 60 PQTYVQGCNLDFLRLNGN-CLERP----IPTSLIDYVNMNFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 60 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~ 133 (186)
...+...++|++|++++| .++.. +...+...++|++|++++|.+..... .+ .......++|++|++++|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l--~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL--AEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH--HHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH--HHHHHhCCCcCEEECcCCcCC
Confidence 344567889999999999 88742 23345556889999999999864211 00 012233578999999999998
Q ss_pred ch----hhHHhhccCCCCEEEc--CCCccccC----ccccccCCCCCceeeccCcccc
Q 047050 134 EK----ILEVVGKLNSLKNSNI--SHNNLIGG----IPSSLRNLTEFESLDLSLNKFV 181 (186)
Q Consensus 134 ~~----~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 181 (186)
.. +...+...+.|+.|++ ++|.+... +.+.+...++|++|++++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 54 4566777789999999 88999754 4556677789999999999874
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=6.4e-08 Score=75.04 Aligned_cols=163 Identities=9% Similarity=0.009 Sum_probs=103.2
Q ss_pred ccccCchhhhcccCccEEEeeecccccccchhHhhcce---eeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhh
Q 047050 11 LDCEFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGV---RTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSL 87 (186)
Q Consensus 11 l~~~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~---l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 87 (186)
+...-..+|.++ +|+.+.+.. .+.......+.++.. +.+.++-...++.......+|+.+.+..+ ++......|
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF 222 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAF 222 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHh
Confidence 443444567774 799999986 565555666666544 45543333345544444689999999855 655455678
Q ss_pred hhcCCCCEEEecCcccccCCC-CCCc----------------cchhhhcCcccEEeccCCccC-----chhhHHhhccCC
Q 047050 88 IDYVNMNFLNVGNNKLSGPIP-KCKN----------------IQTERILTTSATIDLSSNRFQ-----EKILEVVGKLNS 145 (186)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~-~~~~----------------~~~~~~~~~L~~l~l~~n~l~-----~~~~~~~~~l~~ 145 (186)
..+.+|+.+++..+- ..... .+.+ ..++..+.+|+.+.+.+|.+. ......|..+.+
T Consensus 223 ~~~~~L~~l~l~~~l-~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 223 LKTSQLKTIEIPENV-STIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp TTCTTCCCEECCTTC-CEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred hCCCCCCEEecCCCc-cCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 889999999987652 21111 1110 123445677888887776654 344567777888
Q ss_pred CCEEEcCCCccccCccccccCCCCCceeeccCc
Q 047050 146 LKNSNISHNNLIGGIPSSLRNLTEFESLDLSLN 178 (186)
Q Consensus 146 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 178 (186)
|+.+.+.. .++..-..+|.++.+|+.+.+..+
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 88888874 355344556788888888888654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=7.5e-08 Score=73.64 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=100.8
Q ss_pred cCchhhhcccCccEEEeeecccccccchhHhhcceeee-eceeeeecCcccc--cCCCCCEEEccC--CccCCc-----C
Q 047050 14 EFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTF-TNNFHGRIPQTYV--QGCNLDFLRLNG--NCLERP-----I 83 (186)
Q Consensus 14 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~--~l~~L~~L~l~~--n~l~~~-----~ 83 (186)
.++..+..+++|+.|.+++|.-....+-...+++.|.+ .+.+.......+. .+++|++|+++. +...+. +
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 46677788999999999988311111212456777776 3333322222333 689999999853 222111 1
Q ss_pred chhh--hhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch----hhHHhhccCCCCEEEcCCCccc
Q 047050 84 PTSL--IDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK----ILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 84 ~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
...+ ..+++|++|++.+|.+.+..+. .+.....+++|++|+++.|.+.+. ++..+..+++|+.|+++.|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~--~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVE--MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHH--HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHH--HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1222 2478999999999987643210 000011378999999999999764 3344456799999999999887
Q ss_pred cCccccccC-CCCCceeeccCcc
Q 047050 158 GGIPSSLRN-LTEFESLDLSLNK 179 (186)
Q Consensus 158 ~~~~~~~~~-l~~L~~L~l~~n~ 179 (186)
......+.. + -..++++.++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 544444443 2 3557887765
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=2.6e-07 Score=67.56 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=52.1
Q ss_pred hhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccC--CCCEEEcCCCccccCcc----
Q 047050 88 IDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLN--SLKNSNISHNNLIGGIP---- 161 (186)
Q Consensus 88 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~---- 161 (186)
..+++|+.|++++|++++..+ +. .....+++|+.|+|++|.+++. ..+..+. +|+.|++.+|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~-l~--~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD-MS--SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG-GT--THHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCcc-ch--hHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 456778888888888775221 00 1222367788888888888764 2233344 78888888888775544
Q ss_pred ---ccccCCCCCceee
Q 047050 162 ---SSLRNLTEFESLD 174 (186)
Q Consensus 162 ---~~~~~l~~L~~L~ 174 (186)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 2356677777766
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=3.5e-07 Score=66.93 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=56.0
Q ss_pred hhcCcccEEeccCCccCc--hhhHHhhccCCCCEEEcCCCccccCccccccCCC--CCceeeccCccccccCC
Q 047050 117 RILTTSATIDLSSNRFQE--KILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLT--EFESLDLSLNKFVEHIP 185 (186)
Q Consensus 117 ~~~~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~ip 185 (186)
..+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..++ .|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 347899999999999988 4567788899999999999999854 3445555 89999999999988665
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=3.7e-06 Score=57.55 Aligned_cols=92 Identities=8% Similarity=0.083 Sum_probs=62.8
Q ss_pred cCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcc-cccCCCCCCccchhhh----cCcccEEeccCCc-c
Q 047050 59 IPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNK-LSGPIPKCKNIQTERI----LTTSATIDLSSNR-F 132 (186)
Q Consensus 59 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~----~~~L~~l~l~~n~-l 132 (186)
+|.....--.|++||+++|.++...-..+..+++|+.|++++|. +++. ++..... .++|++|++++|. +
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG-----CLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH-----HHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH-----HHHHHHhcccccCCCCEEEcCCCCcC
Confidence 44433223368999999999876555667888999999999885 4321 1111111 2468899998874 7
Q ss_pred CchhhHHhhccCCCCEEEcCCCc
Q 047050 133 QEKILEVVGKLNSLKNSNISHNN 155 (186)
Q Consensus 133 ~~~~~~~~~~l~~L~~L~l~~n~ 155 (186)
+..--..+..+++|+.|+++++.
T Consensus 128 TD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 128 TDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CHHHHHHGGGCTTCCEEEEESCT
T ss_pred CHHHHHHHhcCCCCCEEECCCCC
Confidence 76555566778889999988874
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=6.4e-06 Score=56.35 Aligned_cols=96 Identities=13% Similarity=0.003 Sum_probs=63.7
Q ss_pred cCchhhhcccCccEEEeeecccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCc-cCCcCchhhhhc--
Q 047050 14 EFPDVLKTQHQLQLLIISRNQIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNC-LERPIPTSLIDY-- 90 (186)
Q Consensus 14 ~~p~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l-- 90 (186)
.+|.....--+|+.||+++|.++... -..+..+++|++|++++|. ++...-..++.+
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~G--------------------L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~ 111 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIG--------------------FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN 111 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGG--------------------GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHH--------------------HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc
Confidence 34433333357999999999876321 1234678899999999995 665334455553
Q ss_pred --CCCCEEEecCcc-cccCCCCCCccchhhhcCcccEEeccCCc-cCc
Q 047050 91 --VNMNFLNVGNNK-LSGPIPKCKNIQTERILTTSATIDLSSNR-FQE 134 (186)
Q Consensus 91 --~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-l~~ 134 (186)
++|+.|++++|. +++. +......+++|++|+++++. ++.
T Consensus 112 ~~~~L~~L~Ls~C~~ITD~-----Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 112 LQKSMLEMEIISCGNVTDK-----GIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHCCEEEEESCTTCCHH-----HHHHGGGCTTCCEEEEESCTTCCC
T ss_pred ccCCCCEEEcCCCCcCCHH-----HHHHHhcCCCCCEEECCCCCCCCc
Confidence 479999999985 5421 22233348899999999985 443
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.79 E-value=2e-05 Score=54.92 Aligned_cols=117 Identities=9% Similarity=0.117 Sum_probs=81.1
Q ss_pred cccCCCCCEEEccCC-ccCCc----CchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCch--
Q 047050 63 YVQGCNLDFLRLNGN-CLERP----IPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEK-- 135 (186)
Q Consensus 63 ~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~-- 135 (186)
+.+-+.|++|+++++ .+... +.+.+...+.|+.|++++|.+........ .++...-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~al-A~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL-IELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTH-HHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHH-HHHHhcCCccCeEecCCCcCCHHHH
Confidence 345678999999985 77632 33455667889999999999874321100 12233357899999999999753
Q ss_pred --hhHHhhccCCCCEEEcCCC---cccc----CccccccCCCCCceeeccCccc
Q 047050 136 --ILEVVGKLNSLKNSNISHN---NLIG----GIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 136 --~~~~~~~l~~L~~L~l~~n---~~~~----~~~~~~~~l~~L~~L~l~~n~l 180 (186)
+...+..-+.|+.|++++| .+.. .+.+.+...+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3455556678999999865 3332 2555677788999999987754
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=9e-05 Score=51.59 Aligned_cols=121 Identities=10% Similarity=0.146 Sum_probs=81.8
Q ss_pred hhcccCccEEEeeec-ccccccchhHhhcceeeeeceeeeecCcccccCCCCCEEEccCCccCCc----CchhhhhcCCC
Q 047050 19 LKTQHQLQLLIISRN-QIHGRISNWMWDMGVRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERP----IPTSLIDYVNM 93 (186)
Q Consensus 19 ~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L 93 (186)
+.+-+.|+.|++++| .|....... +...+..-+.|+.|++++|.++.. +...+..-+.|
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~----------------la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRS----------------LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHH----------------HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHH----------------HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 455678999999885 775332222 333556677899999999999743 33445567889
Q ss_pred CEEEecCcccccCCC-CCCccchhhhcCcccEEeccCC---ccCc----hhhHHhhccCCCCEEEcCCCccc
Q 047050 94 NFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSN---RFQE----KILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 94 ~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
++|++++|.+...-. .+ .+....-..|++|++++| .+.. .+...+..-+.|+.++++.|.+.
T Consensus 101 ~~L~L~~N~Ig~~Ga~al--a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARL--LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CEEECCSSBCCHHHHHHH--HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CeEecCCCcCCHHHHHHH--HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 999999999874211 00 012222467999999865 4443 24566777789999999887654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.70 E-value=0.00026 Score=54.46 Aligned_cols=111 Identities=6% Similarity=0.069 Sum_probs=63.3
Q ss_pred cCcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhH
Q 047050 59 IPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILE 138 (186)
Q Consensus 59 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~ 138 (186)
-..+|.++++|+.+.+.. .++......|.++.+|+.+.+..+ +..... .++..+.+|+.+.+..+ ++..-..
T Consensus 280 ~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-----~aF~~C~~L~~i~ip~s-v~~I~~~ 351 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD-----DAFAGCEQLERIAIPSS-VTKIPES 351 (394)
T ss_dssp CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH-----hHhhCCCCCCEEEECcc-cCEEhHh
Confidence 344566777788887753 344323456777888888887654 221111 12333778888888543 5554567
Q ss_pred HhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCccc
Q 047050 139 VVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNKF 180 (186)
Q Consensus 139 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 180 (186)
.|..+.+|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 352 aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 352 AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 7888888888888877543 24566677788777766654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.58 E-value=0.00076 Score=51.42 Aligned_cols=108 Identities=9% Similarity=-0.007 Sum_probs=50.8
Q ss_pred cccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHh
Q 047050 61 QTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 61 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
..+..+..|+.+.+..+ ++......|..+.+|+.+.+..+--. ... ..+..+.+|+.+.+..+.++..-...|
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~-i~~-----~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKT-VPY-----LLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSE-ECT-----TTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccccee-ccc-----cccccccccccccccccccceehhhhh
Confidence 34445555555555443 22222334455555555555432111 000 111225556666665555554444555
Q ss_pred hccCCCCEEEcCCCccccCccccccCCCCCceeecc
Q 047050 141 GKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLS 176 (186)
Q Consensus 141 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 176 (186)
..+.+|+.+.+..+ ++..-..+|.++.+|+.+.+.
T Consensus 307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 56666666666543 332223345555555555553
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.50 E-value=0.001 Score=51.12 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=51.8
Q ss_pred CcccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHH
Q 047050 60 PQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEV 139 (186)
Q Consensus 60 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~ 139 (186)
...+.....++.+......+.. ..|..+.+|+.+.+..+ +..... .++..+.+|+.+.+..+ ++..-...
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~-i~~I~~-----~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS-VKFIGE-----EAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEECT---TTTTTCTTCCEEEECTT-CCEECT-----TTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ccccccccccceeccCceeecc---ccccccccccccccccc-cceech-----hhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 3344455555555554433221 33455556666655443 111101 11222555666666432 44433455
Q ss_pred hhccCCCCEEEcCCCccccCccccccCCCCCceeeccC
Q 047050 140 VGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSL 177 (186)
Q Consensus 140 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 177 (186)
|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++..
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 666666666666555 3323344566666666666644
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.19 E-value=0.0033 Score=48.20 Aligned_cols=110 Identities=9% Similarity=0.152 Sum_probs=76.4
Q ss_pred cccccCCCCCEEEccCCccCCcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccCchhhHHh
Q 047050 61 QTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVV 140 (186)
Q Consensus 61 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~ 140 (186)
.+|..+..|+.+.+.++...- ....|..+..|+.+.+..+ +.. ++ ..++..+.+|+.+.+..+ ++..-...|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I-~~~aF~~c~~L~~i~l~~~-i~~-I~----~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSI-GTGAFMNCPALQDIEFSSR-ITE-LP----ESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEE-CTTTTTTCTTCCEEECCTT-CCE-EC----TTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred ceeeecccccEEeccccccee-cCcccccccccccccCCCc-ccc-cC----ceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 356667778888886654432 3456777888888887543 221 11 112333788999999764 555556788
Q ss_pred hccCCCCEEEcCCCccccCccccccCCCCCceeeccCcc
Q 047050 141 GKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLNK 179 (186)
Q Consensus 141 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 179 (186)
..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.++.
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 89999999999765 553445679999999999998764
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.05 E-value=0.0039 Score=47.81 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=44.5
Q ss_pred hcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCCCCceeeccCc
Q 047050 118 ILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLTEFESLDLSLN 178 (186)
Q Consensus 118 ~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 178 (186)
...+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++..-..+|.++.+|+.+++..+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3678888888654 55545677888999999999755 55344567999999999998765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.0015 Score=42.21 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=39.4
Q ss_pred CEEEccCCccC--CcCchhhhhcCCCCEEEecCcccccCCCCCCccchhhhcCcccEEeccCCccC
Q 047050 70 DFLRLNGNCLE--RPIPTSLIDYVNMNFLNVGNNKLSGPIPKCKNIQTERILTTSATIDLSSNRFQ 133 (186)
Q Consensus 70 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 133 (186)
..++.+++.++ . +|..+ -.+|++|++++|+++...+.. +..+++|+.++|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~-vP~~l--p~~l~~L~Ls~N~l~~l~~~~-----f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPTAF--PVDTTELVLTGNNLTALPPGL-----LDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTT-SCSCC--CTTCSEEECTTSCCSSCCTTT-----GGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCcccc-CCCCC--CcCCCEEECCCCcCCccChhh-----hhhccccCEEEecCCCee
Confidence 47788888887 5 66543 236889999999888554422 222778888999998875
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.0011 Score=42.94 Aligned_cols=57 Identities=14% Similarity=0.292 Sum_probs=43.0
Q ss_pred CEEEecCcccc-cCCCCCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccc
Q 047050 94 NFLNVGNNKLS-GPIPKCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLI 157 (186)
Q Consensus 94 ~~L~l~~n~~~-~~~~~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 157 (186)
..++.+++.++ ..+|.-. ..++++|+|++|.|+...+..|..+++|+.++|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777775 2344211 457899999999998877778888899999999999875
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.88 E-value=0.0067 Score=46.12 Aligned_cols=142 Identities=8% Similarity=0.024 Sum_probs=83.5
Q ss_pred hhhhcccCccEEEeeecccccccchhHhhcc---eeeeeceeeeecCcccccCCCCCEEEccCCccCCcCchhhhhcCCC
Q 047050 17 DVLKTQHQLQLLIISRNQIHGRISNWMWDMG---VRTFTNNFHGRIPQTYVQGCNLDFLRLNGNCLERPIPTSLIDYVNM 93 (186)
Q Consensus 17 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~---~l~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 93 (186)
..+.....++.+.+..+ +.......+.++. .+.+...+...-...+.++.+++.+.+..+ +.......|..+.+|
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 44556667777766544 2222233333332 333333344344456677778888888654 443234567788888
Q ss_pred CEEEecCcccccCCC-CCCccchhhhcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCCccccCccccccCCC
Q 047050 94 NFLNVGNNKLSGPIP-KCKNIQTERILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHNNLIGGIPSSLRNLT 168 (186)
Q Consensus 94 ~~L~l~~n~~~~~~~-~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 168 (186)
+.+.+.++.+..... .+.+ +.+|+.+.+..+ ++..-...|..+.+|+.+.+..+ ++..-..+|.++.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMD------CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEEEECCTTCCEECTTTTTT------CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccceehhhhhcC------CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888887776553222 3333 778888888654 55545667888888888888655 3323344565554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.17 E-value=16 Score=21.84 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=20.3
Q ss_pred hcCcccEEeccCCccCchhhHHhhccCCCCEEEcCCC
Q 047050 118 ILTTSATIDLSSNRFQEKILEVVGKLNSLKNSNISHN 154 (186)
Q Consensus 118 ~~~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 154 (186)
++.+|+.+.+-.+ ++..-...|..|.+|+.+.+...
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3566666666543 33333455666777777666543
Done!