BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047051
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 112 bits (280), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N PK PQ ISS++ +EG+GG GTIKK +F E + F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGLP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I R++KA I D +PK PQ ISS++ +EG+GG GTIKK NF E F+Y
Sbjct: 8 EATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG C K+ +Y + G+
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N +PK PQ ISS++ +EG+GG GTIKK +F E F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N PK PQ ISS++ +EG+GG GTIKK +F E F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N PK PQ ISS++ +EG+GG GTIKK +F E F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKELGETLLRAVESYLLAH 154
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N PK PQ ISS++ + G+GG GTIKK +F E + F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPEGLP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D N PK PQ ISS++ +EG+GG GTIKK +F E F+Y
Sbjct: 8 EATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ +G K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E ++ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQIKASKEMGETLLRAVESYLLAH 154
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S I RL+KA I D P+ PQ ISS++ + G+GG GTIKK +F E + F+Y
Sbjct: 8 ETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPEGLP-FKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VKDRV+ +D+ N + YS++EGG +G + ++ ++ DG K+ +Y + GD
Sbjct: 67 VKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKYHTKGDH 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
+ E V+ K+ T+++A E +LLA+
Sbjct: 127 EVKAEQVKASKEMGETLLRAVESYLLAH 154
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E+ S I RL+KA + DA N +PK PQ I ++LEGDGG GTIKK F E ++ Y
Sbjct: 8 EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEG-SQYGY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VK +++ +D EN+ + Y+++EG LG + + +S G K Y + G+
Sbjct: 67 VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNV 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
+ EE V+ K+ + K E +L +P
Sbjct: 127 EIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E+ S I +L+KA + DA N +PK PQ + ++LEGDGG GTIKK F E + Y
Sbjct: 9 EFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFGEG-SHYGY 67
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VK ++ +D NH + YS++EG L + + S+ G K +Y + GD
Sbjct: 68 VKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSKYHTKGDV 127
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
+ EE V+ K+ + K E +L +P
Sbjct: 128 EIKEEHVKAGKEKAAHLFKLIEGYLKDHP 156
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 96.7 bits (239), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 1/151 (0%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E+ S I RL+KA + DA N +PK PQ I ++L GDGG GTIKK F E ++ Y
Sbjct: 8 EFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGEG-SQYGY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
VK +++ +D EN+ + Y+++EG LG + + +S G K Y + G+
Sbjct: 67 VKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNV 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQC 159
+ EE V+ K+ + K E +L +P
Sbjct: 127 EIKEEHVKAGKEKASNLFKLIETYLKGHPDA 157
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E SP+A L+KAL+ DA N +PKAL S++ +EG+GG GTIKK F E E ++
Sbjct: 8 EINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLED-GETKF 65
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V ++E +D N + YS+V G L D + +G KL ++YE+ GD+
Sbjct: 66 VLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDA 125
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
++++++ K + KA E +LLA+P
Sbjct: 126 EPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
EY S IA +L+KAL+ DA +PKA+ + I S++++EG+GG GTIKK F E E +Y
Sbjct: 9 EYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEG-GESKY 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V ++E +D N + YSIV G L + + ++G K+ I+ E+ GD+
Sbjct: 67 VLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
+EE+ + K KA E +L A+P
Sbjct: 127 QPNEEEGKAAKARGDAFFKAIESYLSAHP 155
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 1 MVLGSIVGEYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFT 60
M +IV E +SPIA RL+KAL+ + H + KA P V S +++EGDGGVGT+ K F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61 EAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKI 120
+ Y+ + + +D N +Y++ EG +L + V +V + G K+ +
Sbjct: 67 DG-HPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGGGSK-GKITV 124
Query: 121 EYESLGDSLLSEEDVRNIKQGILTMVKAAERFLLANPQCLC 161
Y ++EE+V+ ++ K E +L ANP+
Sbjct: 125 TYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S IA RL+KAL+ DA +PKA+ + I SI+ +EG+GG GTIKK E E +Y
Sbjct: 8 ESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIEG-GETKY 65
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V ++E +D N + YSIV G L + + ++G K+ I+ E+ GD+
Sbjct: 66 VLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDA 125
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
+EE+ + K KA E +L A+P+
Sbjct: 126 QPNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 5/151 (3%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
EY S ++ E+L++ ++ D + PKALP+ I + LEGDGG GTIKK F V +F
Sbjct: 14 EYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTF---VGDFGS 70
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFK-VNSYVADVTFTSSSDGDCFAKLKIEYESLGD 127
K ++++D EN + YS+ EG L + + V + + + C K +Y + GD
Sbjct: 71 TKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGD 130
Query: 128 SL-LSEEDVRNIKQGILTMVKAAERFLLANP 157
+ LS++ + + KA E FLLANP
Sbjct: 131 DIELSKDYLEAGIERFEGFTKAVESFLLANP 161
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E+ S +A +L+KAL D+ + +PK + Q I S++++EG+GG GT+KK + Y
Sbjct: 8 EHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASHG-GHTSY 65
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V +++ +D + + YSIV G L + + S DG K+K+++ + GD
Sbjct: 66 VLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGD- 124
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANPQ 158
+LS+ K + KA E ++LANP
Sbjct: 125 VLSDAVREEAKARGTGLFKAVEGYVLANPN 154
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 14 IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRV 73
+ +E LW A D +PK LP ++ + ++EGDGGVGT FNF + Y ++ +
Sbjct: 13 VGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVI 72
Query: 74 EIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEE 133
D +H +VEGG L ++ Y F++ S+ +KI Y+ +S L EE
Sbjct: 73 TEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNVKISYDH--ESELIEE 130
Query: 134 DVRNIK--QGILTMVKAAERFLL 154
V+ K + L + E+FLL
Sbjct: 131 KVKPTKTSESTLFYLGQLEKFLL 153
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 14 IAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRV 73
+ +E LW L D +PK LP ++ + L+EGDGGVGTI FNF V Y ++ +
Sbjct: 13 VRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEI 71
Query: 74 EIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEE 133
D +H ++EGG L ++ Y + + +KI Y+ D EE
Sbjct: 72 TEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSD---IEE 128
Query: 134 DVRNIK--QGILTMVKAAERFL 153
V K Q L ++ ER+L
Sbjct: 129 KVTPTKTSQSTLMYLRRLERYL 150
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S ++ E++++ + D +PKA P S+++ +GDGG GT+K +
Sbjct: 9 ELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDG-GPITT 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
+ R++ ++ E F YS+++G IL + S V ++DG K + + GD+
Sbjct: 67 MTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDA 126
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLAN 156
++ EE+++ + + KA E +L+AN
Sbjct: 127 VVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 6/151 (3%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S +A +L+KAL D+ K + I SI+L+EG+GGVGTIKK E K +
Sbjct: 8 ETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANEGDKT-SF 65
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V +V+ +D N + YSIV G L + + + S G +K+ +++ + GD+
Sbjct: 66 VLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDA 125
Query: 129 LLSEEDVRN--IKQGILTMVKAAERFLLANP 157
LS+ VR+ + +G KA E ++LANP
Sbjct: 126 PLSDA-VRDDALAKG-AGFFKAIEGYVLANP 154
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S +A +L+KAL D+ +PK + + I S++++EG+GG GTIKK +
Sbjct: 8 EQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHD-GHTSF 65
Query: 69 VKDRVEIMDNENHVFRYSIVEGGILGFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGDS 128
V +++ +D N + YSI+ G L + + DG K+ +++ + GD
Sbjct: 66 VLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD- 124
Query: 129 LLSEEDVRNIKQGILTMVKAAERFLLANP 157
+LSE K L + KA E ++LA+P
Sbjct: 125 VLSETVRDQAKFKGLGLFKAIEGYVLAHP 153
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 9 EYKSPIAVERLWKALICDAHNFMPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRY 68
E S ++ E+++ ++ D +PKA S+++ +GDGG GT++ E
Sbjct: 9 EITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLPEG-SPITT 66
Query: 69 VKDRVEIMDNENHVFRYSIVEGGIL-GFKVNSYVADVTFTSSSDGDCFAKLKIEYESLGD 127
+ R + ++ E + ++++G IL GF + S + ++DG K + + GD
Sbjct: 67 MTVRTDAVNKEALSYDSTVIDGDILLGF-IESIETHMVVVPTADGGSITKTTAIFHTKGD 125
Query: 128 SLLSEEDVRNIKQGILTMVKAAERFLLAN 156
+++ EE+++ + KA E +L+AN
Sbjct: 126 AVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 31 MPKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
+P LP ++++ GDGGVGTI F Y K++ ++DNE+ + + +EG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEY-KEKFILVDNEHRLKKVQXIEG 114
Query: 91 GILGFKVNSYVADVTFTSSSDGDCFAKLKIEYE 123
G L V Y + + C K EY
Sbjct: 115 GYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYH 147
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 29 NFMPKALPQVISSIDLLEGDGG-VGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSI 87
+ + KA P I DL EGD G VG+I +N+ E + K+R+E ++ + ++ + +
Sbjct: 41 HHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHD-GEAKVAKERIEAVEPDKNLITFRV 99
Query: 88 VEGGILGFKVNSYVADVTFTSSSDGD-CFAKLKIEYESLGDSLLSEEDVRNIKQGILTMV 146
+EG ++ + S++ + T G +EYE + + + E + Q + +
Sbjct: 100 IEGDLMK-EYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPE---TLLQFCVEVS 155
Query: 147 KAAERFLLAN 156
K + LLA
Sbjct: 156 KEIDEHLLAE 165
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 32 PKALPQVISSIDLLEGDG-GVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
PK I +++GDG VG +++ + +R+EI+D E HV +S+V G
Sbjct: 103 PKVYKNFIRQCRIVQGDGLHVGDLREVMVVSGLPAVSST-ERLEILDEERHVISFSVVGG 161
Query: 91 GILGFKVNSYVADVTFTSSSD 111
++ +Y + T +S D
Sbjct: 162 ---DHRLKNYRSVTTLHASDD 179
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + F +R+E +D+++ V + +V G
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLP-FSTSTERLEFVDDDHRVLSFRVVGG 106
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 47 GDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVF------------RYS-------- 86
GD +G++++ N + +R+E++D+E H+ YS
Sbjct: 91 GDPEIGSLREVNVKSGLPATTST-ERLELLDDEEHILGIKIIGGDHRLKNYSSILTVHPE 149
Query: 87 IVEGGILGFKVNSYVADVTFTSSSDGDCF---AKLKIEYESLGD 127
I+EG + S+V DV ++ D C+ A ++ +SL D
Sbjct: 150 IIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLAD 193
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide
Dismutase Mutant Gly85arg
Length = 154
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 38 VISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGILGFKV 97
++ ++ +L+GD GV + KF E E EI N + R GF +
Sbjct: 1 MVQAVAVLKGDAGVSGVVKF---EQASESEPTTVSYEIAGNSPNAER---------GFHI 48
Query: 98 NSYVADVTFTSSSDGDCFAKLKIEYESLGDSLLSEEDVRNIK 139
+ + D T S G F K + + D + D+RN+K
Sbjct: 49 HEF-GDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMRNVK 89
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + IV G
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTST-ERLEFVDDDHRVLSFRIVGG 120
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 53 TIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEGGI-LGFK---------VNSYVA 102
T+K + +AVK+ R KD + I+DN F I+ + LG +N +
Sbjct: 96 TLKVIDIEDAVKQARKQKDILVIVDN---TFASPILTNPLDLGVDIVVHSATKYINGHTD 152
Query: 103 DVTFTSSSDGDCFAKLKIE-YESLGDSLLSEEDVRNIKQGILTM 145
V S D AK+K + + + +++S D I +G LT+
Sbjct: 153 VVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL 196
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + +V G
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPA-STSTERLEFVDDDHRVLSFRVVGG 106
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + +V G
Sbjct: 48 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTST-ERLEFVDDDHRVLSFRVVGG 105
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + +V G
Sbjct: 63 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTST-ERLEFVDDDHRVLSFRVVGG 120
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + +V G
Sbjct: 49 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTST-ERLEFVDDDHRVLSFRVVGG 106
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 32 PKALPQVISSIDLLEGDGGVGTIKKFNFTEAVKEFRYVKDRVEIMDNENHVFRYSIVEG 90
P+ + L+ GDG VG++++ + +R+E +D+++ V + +V G
Sbjct: 60 PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTST-ERLEFVDDDHRVLSFRVVGG 117
>pdb|1VIO|A Chain A, Crystal Structure Of Pseudouridylate Synthase
pdb|1VIO|B Chain B, Crystal Structure Of Pseudouridylate Synthase
Length = 243
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 126 GDSLLSEEDVRNIKQGILTMVKAAERFLLANPQ-CLCT 162
G +S+ED + +LT ++ + F+L PQ C+C+
Sbjct: 39 GSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQGCVCS 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,704,974
Number of Sequences: 62578
Number of extensions: 185060
Number of successful extensions: 475
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 419
Number of HSP's gapped (non-prelim): 39
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)